Citrus Sinensis ID: 040049

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccccccccccccccEEEEEEEccccEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEcccccHHHHHHcccccccccHHHHHHHHHHccccccccccccccHHHHHccccccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHccccHHccccccccccEEEcEcccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEcccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccccHcccccccccccEEEEEEccc
Coil and Loop (DISEMBL)
VQIFSAKELDKATDHLNVNIVlgqggqgtvhkgmlADERIVAVKKskvvgkgkldeFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEyipngnlsdylheqnEDFVKDVGFIlsrrggiprlkrkkkKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY
Flexible Loop (DISEMBL)
vqifsakeldkatdhLNVNIVLGQGGQGTVHKGMLADERIVAVkkskvvgkgkldefiNKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIlsrrggiprlkrkkkknkiwkqqllkglapkrkkfeeekwrhtvlkrkenky
Low Complexity Region (SEG)
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIvavkkskvvgkgkLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPrlkrkkkknkiwkqqllkGLAPKRKKFEEEKWRHTVLKRKENKY
Disordered region (IsUnstruct)
************TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSR*************************************************
Disordered Region (DISOPRED)
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAV***************NKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTV*KR*****
Disordered Region (DISEMBL)
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL********IWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY
Disordered Region (DISPRO)
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q8GXQ3	642	Wall-associated receptor	yes	no	0.628	0.163	0.752	2e-42
Q9LN59	788	Putative wall-associated	no	no	0.688	0.145	0.678	5e-41
Q9LMT9	764	Putative wall-associated	no	no	0.640	0.140	0.700	6e-40
Q8VYA3	769	Wall-associated receptor	no	no	0.640	0.139	0.663	1e-39
Q8RY17	751	Wall-associated receptor	no	no	0.640	0.142	0.682	1e-39
Q9S9M5	730	Wall-associated receptor	no	no	0.640	0.146	0.682	1e-39
Q7X8C5	748	Wall-associated receptor	no	no	0.640	0.143	0.663	2e-39
Q9C9L5	792	Wall-associated receptor	no	no	0.628	0.132	0.695	5e-39
Q9S9M3	730	Wall-associated receptor	no	no	0.646	0.147	0.657	1e-38
Q9S9M2	761	Wall-associated receptor	no	no	0.646	0.141	0.648	3e-38

>sp|Q8GXQ3|WAKLF_ARATH Wall-associated receptor kinase-like 6 OS=Arabidopsis thaliana GN=WAKL6 PE=2 SV=2

 Score =  171 bits (433), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/105 (75%), Positives = 98/105 (93%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+KEL KATD+ ++N VLGQGGQGTV+KGMLA+ RIVAVK+SKVVG+GK++EFIN+V
Sbjct: 418 RIFSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEV 477

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LHE++E
Sbjct: 478 VLLSQINHRNIVKLLGCCLETEVPVLVYEYIPNGDLFKRLHEKSE 522

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: -

>sp|Q9LN59|WAKLK_ARATH Putative wall-associated receptor kinase-like 11 OS=Arabidopsis thaliana GN=WAKL11 PE=3 SV=2

 Score =  166 bits (421), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 78/115 (67%), Positives = 99/115 (86%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS++EL+KATD+ + + +LGQGGQGTV+KGML D R VAVKKSKVV + KL+EFIN+V
Sbjct: 437 RIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEV 496

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           VILSQIN+R+VVKLLGCCLETEVP LVYE+IPNGNL  ++HE+++D+ K  G  L
Sbjct: 497 VILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIHEESDDYTKTWGMRL 551

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9LMT9|WAKLL_ARATH Putative wall-associated receptor kinase-like 13 OS=Arabidopsis thaliana GN=WAKL13 PE=2 SV=1

 Score =  162 bits (411), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 75/107 (70%), Positives = 94/107 (87%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           ++FS++EL+KATD+ N N V+GQGGQGTV+KGML D R VAVKKS VV + KL EFIN+V
Sbjct: 440 KLFSSRELEKATDNFNDNRVIGQGGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEFINEV 499

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +ILSQIN+R+VVKLLGCCLETEVP+LVYE+IPNGNL  +LHE+ +D+
Sbjct: 500 IILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLHEEFDDY 546

Putative serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8VYA3|WAKLJ_ARATH Wall-associated receptor kinase-like 10 OS=Arabidopsis thaliana GN=WAKL10 PE=2 SV=1

 Score =  162 bits (410), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 98/107 (91%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           ++F+++EL+KAT++ ++  +LG+GGQGTV+KGML D RIVAVKKSKVV + KL+EFIN+V
Sbjct: 419 RVFNSRELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEV 478

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VILSQIN+RN+VKLLGCCLET+VP+LVYE+IPNGNL ++LH+ ++D+
Sbjct: 479 VILSQINHRNIVKLLGCCLETDVPILVYEFIPNGNLFEHLHDDSDDY 525

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q8RY17|WAKLI_ARATH Wall-associated receptor kinase-like 22 OS=Arabidopsis thaliana GN=WAKL22 PE=2 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/107 (68%), Positives = 95/107 (88%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+KEL+KATD+ N+N VLGQGGQGTV+KGML D RIVAVK+SKV+ + K++EFIN+V
Sbjct: 407 KIFSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEV 466

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            +LSQIN+RN+VKL+GCCLETEVP+LVYE+IPNG+L   LH  ++D+
Sbjct: 467 GVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDY 513

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Required during plant's response to pathogen infection.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M5|WAKLA_ARATH Wall-associated receptor kinase-like 1 OS=Arabidopsis thaliana GN=WAKL1 PE=1 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/107 (68%), Positives = 96/107 (89%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+KEL KATD+ +++ VLGQGGQGTV+KGML D  IVAVK+SKVV + K++EFIN++
Sbjct: 415 KIFSSKELRKATDNFSIDRVLGQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEFINEI 474

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LH++++D+
Sbjct: 475 VLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDY 521

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q7X8C5|WAKLB_ARATH Wall-associated receptor kinase-like 2 OS=Arabidopsis thaliana GN=WAKL2 PE=2 SV=1

 Score =  161 bits (407), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/107 (66%), Positives = 95/107 (88%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+ EL+KATD+ N N VLGQGGQGTV+KGML D RIVAVK+SK V + +++EFIN+V
Sbjct: 402 RIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEV 461

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           V+L+QIN+RN+VKLLGCCLETEVP+LVYE++PNG+L   LH++++D+
Sbjct: 462 VVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDY 508

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9C9L5|WAKLH_ARATH Wall-associated receptor kinase-like 9 OS=Arabidopsis thaliana GN=WAKL9 PE=2 SV=1

 Score =  159 bits (403), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/105 (69%), Positives = 96/105 (91%)

Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVV 62
           +FS++EL+KAT++ + N +LGQGGQGTV+KGML D RIVAVKKSKVV + KL+EFIN+VV
Sbjct: 434 VFSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVV 493

Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
           ILSQIN+RN+VKLLGCCLET+VP+LVYE+IPNGNL ++LH++ ++
Sbjct: 494 ILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDE 538

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M3|WAKLC_ARATH Wall-associated receptor kinase-like 3 OS=Arabidopsis thaliana GN=WAKL3 PE=2 SV=2

 Score =  159 bits (401), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/108 (65%), Positives = 96/108 (88%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS++EL+KATD+ +++ VLGQGGQGTV+K ML D  IVAVK+SKVV + K++EFIN++
Sbjct: 414 KIFSSRELEKATDNFSIDRVLGQGGQGTVYKRMLVDGSIVAVKRSKVVDEDKMEEFINEI 473

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LH++ +D++
Sbjct: 474 VLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDEYDDYM 521

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

>sp|Q9S9M2|WAKLD_ARATH Wall-associated receptor kinase-like 4 OS=Arabidopsis thaliana GN=WAKL4 PE=2 SV=2

 Score =  157 bits (398), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 70/108 (64%), Positives = 94/108 (87%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+ EL+KATD+ N N VLGQGGQGTV+KGML D RIVAVK+SK + + K++EFIN+V
Sbjct: 410 KIFSSNELEKATDNFNTNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAMDEDKVEEFINEV 469

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           V+L+QIN+RN+VKLLGCCLETEVP+LVYE++PNG+L   L ++ +D++
Sbjct: 470 VVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLRDECDDYI 517

Serine/threonine-protein kinase that may function as a signaling receptor of extracellular matrix component. Plays a role in plant mineral nutrients response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224053058	682	predicted protein [Populus trichocarpa]	0.646	0.158	0.777	4e-44
224143699	635	predicted protein [Populus trichocarpa]	0.646	0.170	0.768	3e-43
224132194	717	predicted protein [Populus trichocarpa]	0.640	0.149	0.757	9e-42
224075820	626	predicted protein [Populus trichocarpa]	0.646	0.172	0.740	1e-41
224143695	552	predicted protein [Populus trichocarpa]	0.646	0.195	0.75	1e-41
224053050	741	predicted protein [Populus trichocarpa]	0.640	0.144	0.747	1e-41
224146843	546	predicted protein [Populus trichocarpa]	0.640	0.195	0.747	2e-41
224053046	337	predicted protein [Populus trichocarpa]	0.652	0.323	0.752	2e-41
15219130	642	wall associated kinase-like 6 [Arabidops	0.628	0.163	0.752	1e-40
224105603	602	predicted protein [Populus trichocarpa]	0.640	0.177	0.738	1e-40

>gi|224053058|ref|XP_002297686.1| predicted protein [Populus trichocarpa] gi|222844944|gb|EEE82491.1| predicted protein [Populus trichocarpa]

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 84/108 (77%), Positives = 99/108 (91%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +I+S+KEL+ ATD  NVN +LGQGGQGTV+KGMLAD RIVAVKKS VV +GKL+EFIN+V
Sbjct: 337 KIYSSKELEVATDRFNVNRILGQGGQGTVYKGMLADGRIVAVKKSMVVDEGKLEEFINEV 396

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           V+LSQIN+RNVVKLLGCCLETEVPLLVYE+IPNGNL  Y+H+QNEDF+
Sbjct: 397 VVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGNLYKYIHDQNEDFL 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143699|ref|XP_002336072.1| predicted protein [Populus trichocarpa] gi|222869913|gb|EEF07044.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 83/108 (76%), Positives = 98/108 (90%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +I+S+KEL+ ATD  NVN +LGQGGQGTV+KGMLAD RIVAVKKS VV +GKL+EFIN+V
Sbjct: 348 KIYSSKELEVATDRFNVNRILGQGGQGTVYKGMLADGRIVAVKKSMVVDEGKLEEFINEV 407

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           V+LSQIN+RNVVKLLGCCLETEVPLLVYE+IPNGNL  Y+H+ NEDF+
Sbjct: 408 VVLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGNLYKYIHDPNEDFL 455

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132194|ref|XP_002328208.1| predicted protein [Populus trichocarpa] gi|222837723|gb|EEE76088.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 81/107 (75%), Positives = 95/107 (88%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+ EL+KATD+ N N +LG GGQGTV+KGMLAD  IVAVKKS +V + KL+EFIN+V
Sbjct: 384 KIFSSNELEKATDYFNENRILGHGGQGTVYKGMLADGSIVAVKKSTIVDEEKLEEFINEV 443

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VILSQIN+RNVV+LLGCCLET+VPLLVYE+IPNG LS YLHEQNEDF
Sbjct: 444 VILSQINHRNVVRLLGCCLETDVPLLVYEFIPNGTLSHYLHEQNEDF 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075820|ref|XP_002335844.1| predicted protein [Populus trichocarpa] gi|222835559|gb|EEE73994.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/108 (74%), Positives = 96/108 (88%)

Query: 1   VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK 60
           +++F +KELDKATDH NVN  LGQGGQGTV+KGMLAD +IVAVKKSKV+ +G L +FIN+
Sbjct: 337 IKMFPSKELDKATDHYNVNRTLGQGGQGTVYKGMLADGKIVAVKKSKVIDEGNLRQFINE 396

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VV+LSQIN+RNVVKLLGCCLETEVPLLVYE+IPNG L  +LH+ NE+F
Sbjct: 397 VVLLSQINHRNVVKLLGCCLETEVPLLVYEFIPNGTLFQFLHDPNEEF 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143695|ref|XP_002336071.1| predicted protein [Populus trichocarpa] gi|222869912|gb|EEF07043.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 81/108 (75%), Positives = 97/108 (89%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +I+S+K L+ ATD  NVN +LGQGGQGTV+KGMLAD RIVAVKKS VV +GKL+EFIN+V
Sbjct: 337 KIYSSKGLEVATDRFNVNRILGQGGQGTVYKGMLADGRIVAVKKSMVVDEGKLEEFINEV 396

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           V+LSQIN+RNVVKLLGCCLETEVPLLVYE+I NGNL  Y+H++NEDF+
Sbjct: 397 VVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGNLYKYIHDRNEDFL 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053050|ref|XP_002297682.1| predicted protein [Populus trichocarpa] gi|222844940|gb|EEE82487.1| predicted protein [Populus trichocarpa]

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/107 (74%), Positives = 97/107 (90%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IF++KEL+KATD  N N +LGQGGQGTV+KGMLAD  IVAVKKSK+V + KL+EFIN+V
Sbjct: 394 KIFTSKELEKATDRFNDNRILGQGGQGTVYKGMLADGMIVAVKKSKIVDEEKLEEFINEV 453

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VILSQ+N+RNVVKLLGCCLETEVPLLVYE+IPNGNL +Y+H+Q E+F
Sbjct: 454 VILSQLNHRNVVKLLGCCLETEVPLLVYEFIPNGNLFEYIHDQKEEF 500

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146843|ref|XP_002336350.1| predicted protein [Populus trichocarpa] gi|222834776|gb|EEE73239.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 80/107 (74%), Positives = 97/107 (90%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IF++KEL+KATD  N N +LGQGGQGTV+KGMLAD  IVAVKKSK+V + KL+EFIN+V
Sbjct: 354 KIFTSKELEKATDRFNDNRILGQGGQGTVYKGMLADGMIVAVKKSKMVDEEKLEEFINEV 413

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VILSQ+N+RNVVKLLGCCLETEVPLLVYE+IPNGNL +Y+H+Q E+F
Sbjct: 414 VILSQLNHRNVVKLLGCCLETEVPLLVYEFIPNGNLFEYIHDQKEEF 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053046|ref|XP_002297680.1| predicted protein [Populus trichocarpa] gi|222844938|gb|EEE82485.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (438), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 82/109 (75%), Positives = 98/109 (89%)

Query: 1   VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK 60
            +I+S+KEL+ ATD  NVN +LGQGGQGTV+KGMLAD RIVAVKKS VV +GKL+EFIN+
Sbjct: 49  TKIYSSKELEVATDRFNVNRILGQGGQGTVYKGMLADGRIVAVKKSMVVDEGKLEEFINE 108

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           VV+LSQIN+RNVVKLLGCCLETEVPLLVYE+I NGNL  Y+H++NEDF+
Sbjct: 109 VVVLSQINHRNVVKLLGCCLETEVPLLVYEFISNGNLYKYIHDRNEDFL 157

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219130|ref|NP_173062.1| wall associated kinase-like 6 [Arabidopsis thaliana] gi|332278116|sp|Q8GXQ3.2|WAKLF_ARATH RecName: Full=Wall-associated receptor kinase-like 6; Flags: Precursor gi|332191289|gb|AEE29410.1| wall associated kinase-like 6 [Arabidopsis thaliana]

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/105 (75%), Positives = 98/105 (93%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IFS+KEL KATD+ ++N VLGQGGQGTV+KGMLA+ RIVAVK+SKVVG+GK++EFIN+V
Sbjct: 418 RIFSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEV 477

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LHE++E
Sbjct: 478 VLLSQINHRNIVKLLGCCLETEVPVLVYEYIPNGDLFKRLHEKSE 522

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105603|ref|XP_002333795.1| predicted protein [Populus trichocarpa] gi|222838516|gb|EEE76881.1| predicted protein [Populus trichocarpa]

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/107 (73%), Positives = 96/107 (89%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
           +IF++KEL+KATD  N N +LGQGGQGTV+KGM AD  IVAVKKSK+V + KL+EFIN+V
Sbjct: 386 KIFTSKELEKATDRFNDNRILGQGGQGTVYKGMQADGMIVAVKKSKMVDEEKLEEFINEV 445

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VILSQ+N+RNVVKLLGCCLETEVPLLVYE+IPNGNL +Y+H+Q E+F
Sbjct: 446 VILSQVNHRNVVKLLGCCLETEVPLLVYEFIPNGNLFEYIHDQKEEF 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2016377	788	AT1G19390 [Arabidopsis thalian	0.688	0.145	0.591	2.1e-31
TAIR|locus:2200527	642	WAKL6 "wall associated kinase-	0.628	0.163	0.647	2.3e-31
TAIR|locus:2030988	764	AT1G17910 [Arabidopsis thalian	0.640	0.140	0.616	6.7e-31
TAIR|locus:2200562	748	WAKL2 "wall associated kinase-	0.640	0.143	0.598	8.1e-31
TAIR|locus:2019893	751	RFO1 "RESISTANCE TO FUSARIUM O	0.640	0.142	0.607	1.3e-30
TAIR|locus:2200552	730	WAKL1 "wall associated kinase-	0.640	0.146	0.598	1.6e-30
TAIR|locus:2019843	769	WAKL10 "WALL ASSOCIATED KINASE	0.640	0.139	0.570	1.8e-30
TAIR|locus:2205040	792	AT1G69730 [Arabidopsis thalian	0.628	0.132	0.6	4.2e-30
TAIR|locus:2032875	720	AT1G16260 [Arabidopsis thalian	0.640	0.148	0.579	5.4e-30
TAIR|locus:2126316	786	AT4G31100 [Arabidopsis thalian	0.634	0.134	0.603	2.2e-28

TAIR|locus:2016377 AT1G19390 [Arabidopsis thaliana (taxid:3702)]

 Score = 354 (129.7 bits), Expect = 2.1e-31, P = 2.1e-31
 Identities = 68/115 (59%), Positives = 88/115 (76%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IFS++EL+KATD+ + + +LGQGGQGTV+KGML D R              L+EFIN+V
Sbjct:   437 RIFSSRELEKATDNFSESRILGQGGQGTVYKGMLVDGRTVAVKKSKVVDEDKLEEFINEV 496

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
             VILSQIN+R+VVKLLGCCLETEVP LVYE+IPNGNL  ++HE+++D+ K  G  L
Sbjct:   497 VILSQINHRHVVKLLGCCLETEVPTLVYEFIPNGNLFQHIHEESDDYTKTWGMRL 551

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200527 WAKL6 "wall associated kinase-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 2.3e-31, P = 2.3e-31
 Identities = 68/105 (64%), Positives = 85/105 (80%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IFS+KEL KATD+ ++N VLGQGGQGTV+KGMLA+ RI             ++EFIN+V
Sbjct:   418 RIFSSKELKKATDNFSMNRVLGQGGQGTVYKGMLAEGRIVAVKRSKVVGEGKMEEFINEV 477

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
             V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LHE++E
Sbjct:   478 VLLSQINHRNIVKLLGCCLETEVPVLVYEYIPNGDLFKRLHEKSE 522

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2030988 AT1G17910 [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 6.7e-31, P = 6.7e-31
 Identities = 66/107 (61%), Positives = 84/107 (78%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             ++FS++EL+KATD+ N N V+GQGGQGTV+KGML D R              L EFIN+V
Sbjct:   440 KLFSSRELEKATDNFNDNRVIGQGGQGTVYKGMLVDGRSVAVKKSNVVDEDKLQEFINEV 499

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             +ILSQIN+R+VVKLLGCCLETEVP+LVYE+IPNGNL  +LHE+ +D+
Sbjct:   500 IILSQINHRHVVKLLGCCLETEVPILVYEFIPNGNLFQHLHEEFDDY 546

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2200562 WAKL2 "wall associated kinase-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 348 (127.6 bits), Expect = 8.1e-31, P = 8.1e-31
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IFS+ EL+KATD+ N N VLGQGGQGTV+KGML D RI             ++EFIN+V
Sbjct:   402 RIFSSHELEKATDNFNKNRVLGQGGQGTVYKGMLVDGRIVAVKRSKAVDEDRVEEFINEV 461

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             V+L+QIN+RN+VKLLGCCLETEVP+LVYE++PNG+L   LH++++D+
Sbjct:   462 VVLAQINHRNIVKLLGCCLETEVPVLVYEFVPNGDLCKRLHDESDDY 508

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;IDA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0046777 "protein autophosphorylation" evidence=IDA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2019893 RFO1 "RESISTANCE TO FUSARIUM OXYSPORUM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 65/107 (60%), Positives = 84/107 (78%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IFS+KEL+KATD+ N+N VLGQGGQGTV+KGML D RI             ++EFIN+V
Sbjct:   407 KIFSSKELEKATDNFNMNRVLGQGGQGTVYKGMLVDGRIVAVKRSKVLDEDKVEEFINEV 466

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
              +LSQIN+RN+VKL+GCCLETEVP+LVYE+IPNG+L   LH  ++D+
Sbjct:   467 GVLSQINHRNIVKLMGCCLETEVPILVYEHIPNGDLFKRLHHDSDDY 513

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2200552 WAKL1 "wall associated kinase-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 1.6e-30, P = 1.6e-30
 Identities = 64/107 (59%), Positives = 85/107 (79%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IFS+KEL KATD+ +++ VLGQGGQGTV+KGML D  I             ++EFIN++
Sbjct:   415 KIFSSKELRKATDNFSIDRVLGQGGQGTVYKGMLVDGSIVAVKRSKVVDEDKMEEFINEI 474

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             V+LSQIN+RN+VKLLGCCLETEVP+LVYEYIPNG+L   LH++++D+
Sbjct:   475 VLLSQINHRNIVKLLGCCLETEVPILVYEYIPNGDLFKRLHDESDDY 521

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005618 "cell wall" evidence=ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2019843 WAKL10 "WALL ASSOCIATED KINASE (WAK)-LIKE 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 61/107 (57%), Positives = 87/107 (81%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             ++F+++EL+KAT++ ++  +LG+GGQGTV+KGML D RI             L+EFIN+V
Sbjct:   419 RVFNSRELEKATENFSLTRILGEGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEV 478

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             VILSQIN+RN+VKLLGCCLET+VP+LVYE+IPNGNL ++LH+ ++D+
Sbjct:   479 VILSQINHRNIVKLLGCCLETDVPILVYEFIPNGNLFEHLHDDSDDY 525

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006182 "cGMP biosynthetic process" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0009620 "response to fungus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009723 "response to ethylene stimulus" evidence=RCA

TAIR|locus:2205040 AT1G69730 [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-30, P = 4.2e-30
 Identities = 63/105 (60%), Positives = 85/105 (80%)

Query:     3 IFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVV 62
             +FS++EL+KAT++ + N +LGQGGQGTV+KGML D RI             L+EFIN+VV
Sbjct:   434 VFSSRELEKATENFSSNRILGQGGQGTVYKGMLVDGRIVAVKKSKVVDEDKLEEFINEVV 493

Query:    63 ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
             ILSQIN+RN+VKLLGCCLET+VP+LVYE+IPNGNL ++LH++ ++
Sbjct:   494 ILSQINHRNIVKLLGCCLETKVPVLVYEFIPNGNLFEHLHDEFDE 538

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2032875 AT1G16260 [Arabidopsis thaliana (taxid:3702)]

 Score = 340 (124.7 bits), Expect = 5.4e-30, P = 5.4e-30
 Identities = 62/107 (57%), Positives = 81/107 (75%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             ++FS+ +L+ ATD  N + +LGQGGQGTV+KGML D  I             L+EFIN++
Sbjct:   376 KVFSSNDLENATDRFNASRILGQGGQGTVYKGMLEDGMIVAVKKSKALKEENLEEFINEI 435

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             ++LSQIN+RNVVK+LGCCLETEVP+LVYE+IPN NL D+LH  +EDF
Sbjct:   436 ILLSQINHRNVVKILGCCLETEVPILVYEFIPNRNLFDHLHNPSEDF 482

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2126316 AT4G31100 [Arabidopsis thaliana (taxid:3702)]

 Score = 326 (119.8 bits), Expect = 2.2e-28, P = 2.2e-28
 Identities = 64/106 (60%), Positives = 80/106 (75%)

Query:     2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKV 61
             +IF++KEL+KAT++ + N VLG GGQGTV+KGML D R              L EFIN+V
Sbjct:   430 RIFTSKELEKATENFSENRVLGHGGQGTVYKGMLVDGRTVAVKKSKVIDEDKLQEFINEV 489

Query:    62 VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
             VILSQIN+R+VVKLLGCCLETEVP+LVYE+I NGNL  ++HE+  D
Sbjct:   490 VILSQINHRHVVKLLGCCLETEVPILVYEFIINGNLFKHIHEEEAD 535

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GXQ3	WAKLF_ARATH	2, ., 7, ., 1, 1, ., -	0.7523	0.6287	0.1635	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam07714	258	pfam07714, Pkinase_Tyr, Protein tyrosine kinase	3e-17
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	3e-17
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	9e-17
cd00192	262	cd00192, PTKc, Catalytic domain of Protein Tyrosin	2e-16
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	3e-15
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	1e-12
cd05049	280	cd05049, PTKc_Trk, Catalytic domain of the Protein	2e-12
cd05051	296	cd05051, PTKc_DDR, Catalytic domain of the Protein	7e-12
cd05041	251	cd05041, PTKc_Fes_like, Catalytic domain of Fes-li	1e-10
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	2e-10
cd05058	262	cd05058, PTKc_Met_Ron, Catalytic domain of the Pro	6e-10
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	7e-10
cd05085	250	cd05085, PTKc_Fer, Catalytic domain of the Protein	9e-10
cd05112	256	cd05112, PTKc_Itk, Catalytic domain of the Protein	2e-09
cd05059	256	cd05059, PTKc_Tec_like, Catalytic domain of Tec-li	2e-09
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	6e-09
cd05048	283	cd05048, PTKc_Ror, Catalytic Domain of the Protein	6e-09
cd05052	263	cd05052, PTKc_Abl, Catalytic domain of the Protein	6e-09
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	2e-08
cd05033	266	cd05033, PTKc_EphR, Catalytic domain of Ephrin Rec	2e-08
cd05044	269	cd05044, PTKc_c-ros, Catalytic domain of the Prote	3e-08
cd05035	273	cd05035, PTKc_Axl_like, Catalytic Domain of Axl-li	4e-08
cd05039	256	cd05039, PTKc_Csk_like, Catalytic domain of C-term	7e-08
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	8e-08
cd05110	303	cd05110, PTKc_HER4, Catalytic domain of the Protei	1e-07
cd05038	284	cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domai	1e-07
cd05045	290	cd05045, PTKc_RET, Catalytic domain of the Protein	2e-07
cd05050	288	cd05050, PTKc_Musk, Catalytic domain of the Protei	2e-07
cd05060	257	cd05060, PTKc_Syk_like, Catalytic domain of Spleen	3e-07
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	3e-07
cd05057	279	cd05057, PTKc_EGFR_like, Catalytic domain of Epide	3e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	3e-07
cd05075	272	cd05075, PTKc_Axl, Catalytic domain of the Protein	5e-07
cd05097	295	cd05097, PTKc_DDR_like, Catalytic domain of Discoi	7e-07
cd05063	268	cd05063, PTKc_EphR_A2, Catalytic domain of the Pro	7e-07
cd05036	277	cd05036, PTKc_ALK_LTK, Catalytic domain of the Pro	7e-07
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	1e-06
cd05056	270	cd05056, PTKc_FAK, Catalytic domain of the Protein	1e-06
cd05108	316	cd05108, PTKc_EGFR, Catalytic domain of the Protei	2e-06
cd05093	288	cd05093, PTKc_TrkB, Catalytic domain of the Protei	3e-06
cd05092	280	cd05092, PTKc_TrkA, Catalytic domain of the Protei	4e-06
cd05046	275	cd05046, PTK_CCK4, Pseudokinase domain of the Prot	5e-06
cd05113	256	cd05113, PTKc_Btk_Bmx, Catalytic domain of the Pro	5e-06
cd05102	338	cd05102, PTKc_VEGFR3, Catalytic domain of the Prot	5e-06
cd05034	261	cd05034, PTKc_Src_like, Catalytic domain of Src ki	6e-06
cd05054	337	cd05054, PTKc_VEGFR, Catalytic domain of the Prote	6e-06
cd05096	304	cd05096, PTKc_DDR1, Catalytic domain of the Protei	7e-06
cd05084	252	cd05084, PTKc_Fes, Catalytic domain of the Protein	8e-06
cd05081	284	cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2)	9e-06
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-05
cd05095	296	cd05095, PTKc_DDR2, Catalytic domain of the Protei	1e-05
cd08529	256	cd08529, STKc_FA2-like, Catalytic domain of the Pr	1e-05
cd06647	293	cd06647, STKc_PAK_I, Catalytic domain of the Prote	2e-05
cd05103	343	cd05103, PTKc_VEGFR2, Catalytic domain of the Prot	3e-05
cd05080	283	cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) doma	3e-05
cd05037	259	cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) dom	4e-05
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-05
cd05114	256	cd05114, PTKc_Tec_Rlk, Catalytic domain of the Pro	5e-05
cd05148	261	cd05148, PTKc_Srm_Brk, Catalytic domain of the Pro	6e-05
cd05078	258	cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat	1e-04
cd05042	269	cd05042, PTKc_Aatyk, Catalytic domain of the Prote	1e-04
cd05082	256	cd05082, PTKc_Csk, Catalytic domain of the Protein	1e-04
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	1e-04
cd05062	277	cd05062, PTKc_IGF-1R, Catalytic domain of the Prot	2e-04
cd08224	267	cd08224, STKc_Nek6_Nek7, Catalytic domain of the P	2e-04
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	2e-04
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	2e-04
cd05094	291	cd05094, PTKc_TrkC, Catalytic domain of the Protei	3e-04
cd06656	297	cd06656, STKc_PAK3, Catalytic domain of the Protei	3e-04
cd06654	296	cd06654, STKc_PAK1, Catalytic domain of the Protei	3e-04
cd05053	293	cd05053, PTKc_FGFR, Catalytic domain of the Protei	3e-04
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	3e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	3e-04
cd05068	261	cd05068, PTKc_Frk_like, Catalytic domain of Fyn-re	3e-04
cd05040	257	cd05040, PTKc_Ack_like, Catalytic domain of the Pr	4e-04
cd05061	288	cd05061, PTKc_InsR, Catalytic domain of the Protei	4e-04
cd06655	296	cd06655, STKc_PAK2, Catalytic domain of the Protei	4e-04
cd05090	283	cd05090, PTKc_Ror1, Catalytic domain of the Protei	4e-04
cd05065	269	cd05065, PTKc_EphR_B, Catalytic domain of the Prot	5e-04
cd05055	302	cd05055, PTKc_PDGFR, Catalytic domain of the Prote	5e-04
cd05116	257	cd05116, PTKc_Syk, Catalytic domain of the Protein	5e-04
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	6e-04
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	6e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	7e-04
cd05088	303	cd05088, PTKc_Tie2, Catalytic domain of the Protei	7e-04
cd05109	279	cd05109, PTKc_HER2, Catalytic domain of the Protei	0.001
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	0.001
cd06648	285	cd06648, STKc_PAK_II, Catalytic domain of the Prot	0.001
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	0.001
cd05111	279	cd05111, PTK_HER3, Pseudokinase domain of the Prot	0.002
cd05064	266	cd05064, PTKc_EphR_A10, Catalytic domain of the Pr	0.002
cd05066	267	cd05066, PTKc_EphR_A, Catalytic domain of the Prot	0.002
cd05074	273	cd05074, PTKc_Tyro3, Catalytic domain of the Prote	0.002
cd05107	401	cd05107, PTKc_PDGFR_beta, Catalytic domain of the	0.002
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.002
cd08220	256	cd08220, STKc_Nek8, Catalytic domain of the Protei	0.002
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.003
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	0.003
cd05105	400	cd05105, PTKc_PDGFR_alpha, Catalytic domain of the	0.004

>gnl|CDD|219530 pfam07714, Pkinase_Tyr, Protein tyrosine kinase

 Score = 75.6 bits (187), Expect = 3e-17
 Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 6/94 (6%)

Query: 21  VLGQGGQGTVHKGML-----ADERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVK 74
            LG+G  G V+KG L       E  VAVK  K    + + +EF+ +  I+ ++++ N+V+
Sbjct: 6   KLGEGAFGEVYKGTLKGDGEGTETKVAVKTLKEGASEEEREEFLEEASIMKKLSHPNIVR 65

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG C + E   +V EY+P G+L D+L +  E  
Sbjct: 66  LLGVCTQGEPLYIVTEYMPGGDLLDFLRKHGEKL 99

Length = 258

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 75.7 bits (187), Expect = 3e-17
 Identities = 36/101 (35%), Positives = 56/101 (55%), Gaps = 6/101 (5%)

Query: 16  LNVNIVLGQGGQGTVHKGMLAD-----ERIVAVKKSKVVGKGK-LDEFINKVVILSQINY 69
           L +   LG+G  G V+KG L       E  VAVK  K     + ++EF+ +  I+ ++++
Sbjct: 1   LTLGKKLGEGAFGEVYKGTLKGKGDGKEVEVAVKTLKEDASEQQIEEFLREARIMRKLDH 60

Query: 70  RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVK 110
            N+VKLLG C E E  ++V EY+P G+L DYL +     + 
Sbjct: 61  PNIVKLLGVCTEEEPLMIVMEYMPGGDLLDYLRKNRPKELS 101

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 74.5 bits (184), Expect = 9e-17
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 6/94 (6%)

Query: 16  LNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGK-LDEFINKVVILSQINY 69
           L +   LG+G  G V+KG L       +  VAVK  K     + ++EF+ +  I+ ++++
Sbjct: 1   LTLGKKLGEGAFGEVYKGKLKGKGGKKKVEVAVKTLKEDASEQQIEEFLREARIMRKLDH 60

Query: 70  RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
            NVVKLLG C E E   +V EY+  G+L  YL +
Sbjct: 61  PNVVKLLGVCTEEEPLYIVMEYMEGGDLLSYLRK 94

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|173624 cd00192, PTKc, Catalytic domain of Protein Tyrosine Kinases

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 35/102 (34%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 21  VLGQGGQGTVHKGML----ADERIVAVKKSK-VVGKGKLDEFINKVVILSQINYRNVVKL 75
            LG+G  G V+KG L         VAVK  K    + +  +F+ +  ++ ++ + NVV+L
Sbjct: 2   KLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRL 61

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILS 117
           LG C E E   LV EY+  G+L DYL +    F       LS
Sbjct: 62  LGVCTEEEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEKSTLS 103

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain, leading to intracellular signaling. Some RTKs are orphan receptors with no known ligands. Non-receptor (or cytoplasmic) tyr kinases are distributed in different intracellular compartments and are usually multi-domain proteins containing a catalytic tyr kinase domain as well as various regulatory domains such as SH3 and SH2. PTKs are usually autoinhibited and require a mechanism for activation. In many PTKs, the phosphorylation of tyr residues in the activation loop is essential for optimal activity. Aberrant expression of PTKs is associated with many development abnormalities and cancers. Length = 262

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 70.0 bits (172), Expect = 3e-15
 Identities = 31/92 (33%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
           LG+GG GTV+        + VA+K   K      L+E + ++ IL ++N+ N+VKL G  
Sbjct: 1   LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVF 60

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDFVKD 111
            +     LV EY   G+L D L E      +D
Sbjct: 61  EDENHLYLVMEYCEGGSLKDLLKENEGKLSED 92

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 63.3 bits (155), Expect = 1e-12
 Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
            LG+G  G V+        ++VA+K   K   K   +  + ++ IL ++ + N+V+L   
Sbjct: 6   KLGEGSFGKVYLARDKKTGKLVAIKVIKKKKIKKDRERILREIKILKKLKHPNIVRLYDV 65

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQ---NEDFVK 110
             + +   LV EY   G+L D L ++   +ED  +
Sbjct: 66  FEDEDKLYLVMEYCEGGDLFDLLKKRGRLSEDEAR 100

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|133180 cd05049, PTKc_Trk, Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 9/97 (9%)

Query: 21  VLGQGGQGTVHKGMLA------DERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNV 72
            LG+G  G V  G         D+ +VAVK  K       + D F  +  +L+   + N+
Sbjct: 12  ELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKD-FEREAELLTNFQHENI 70

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           VK  G C E + P++V+EY+ +G+L+ +L     D  
Sbjct: 71  VKFYGVCTEGDPPIMVFEYMEHGDLNKFLRSHGPDAA 107

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalytic domain. Trk receptors are mainly expressed in the peripheral and central nervous systems. They play important roles in cell fate determination, neuronal survival and differentiation, as well as in the regulation of synaptic plasticity. Altered expression of Trk receptors is associated with many human diseases. Length = 280

>gnl|CDD|173632 cd05051, PTKc_DDR, Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

 Score = 61.6 bits (150), Expect = 7e-12
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 18/112 (16%)

Query: 10  DKATDHLNVNIVLGQGGQGTVH----------------KGMLADE-RIVAVKKSKV-VGK 51
           +     LN    LG+G  G VH                +   AD   +VAVK  +     
Sbjct: 1   EFPRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASD 60

Query: 52  GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
              ++F+ +V ILS+++  N+ +LLG C       ++ EY+ NG+L+ +L +
Sbjct: 61  NAREDFLKEVKILSRLSDPNIARLLGVCTVDPPLCMIMEYMENGDLNQFLQK 112

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 296

>gnl|CDD|173629 cd05041, PTKc_Fes_like, Catalytic domain of Fes-like Protein Tyrosine Kinases

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 1/81 (1%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDE-FINKVVILSQINYRNVVKLLGCCL 80
           +G+G  G V+KG+L     VAVK  +      L   F+ +  IL Q ++ N+VKL+G C+
Sbjct: 3   IGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCV 62

Query: 81  ETEVPLLVYEYIPNGNLSDYL 101
           + +   +V E +P G+L  +L
Sbjct: 63  QKQPIYIVMELVPGGSLLTFL 83

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes and Fer kinases play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Fes and Fer show redundancy in their biological functions. Length = 251

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 57.3 bits (139), Expect = 2e-10
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 3/88 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLG 77
            LG G  GTV+K       +IVAVK  K       K      ++ IL ++++ N+V+L+ 
Sbjct: 6   KLGSGSFGTVYKAKHKGTGKIVAVKILKKRSEKSKKDQTARREIRILRRLSHPNIVRLID 65

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQN 105
              + +   LV EY   G+L DYL    
Sbjct: 66  AFEDKDHLYLVMEYCEGGDLFDYLSRGG 93

Length = 260

>gnl|CDD|133189 cd05058, PTKc_Met_Ron, Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

 Score = 55.9 bits (135), Expect = 6e-10
 Identities = 38/117 (32%), Positives = 67/117 (57%), Gaps = 8/117 (6%)

Query: 21  VLGQGGQGTVHKGMLAD----ERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKL 75
           V+G+G  G V+ G L D    +   AVK  +++    ++++F+ + +I+   ++ NV+ L
Sbjct: 2   VIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSL 61

Query: 76  LGCCLETE-VPLLVYEYIPNGNLSDYLH-EQNEDFVKD-VGFILSRRGGIPRLKRKK 129
           LG CL +E  PL+V  Y+ +G+L +++  E +   VKD +GF L    G+  L  KK
Sbjct: 62  LGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKK 118

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also called the HGF receptor. HGF/Met signaling plays a role in growth, transformation, cell motility, invasion, metastasis, angiogenesis, wound healing, and tissue regeneration. Aberrant expression of Met through mutations or gene amplification is associated with many human cancers including hereditary papillary renal and gastric carcinomas. The ligand for Ron is macrophage stimulating protein (MSP). Ron signaling is important in regulating cell motility, adhesion, proliferation, and apoptosis. Aberrant Ron expression is implicated in tumorigenesis and metastasis. Length = 262

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 55.6 bits (135), Expect = 7e-10
 Identities = 25/87 (28%), Positives = 47/87 (54%), Gaps = 5/87 (5%)

Query: 21  VLGQGGQGTVHKGMLADE-RIVAVKKSKVVGKGK--LDEFINKVVILSQINYRNVVKLLG 77
           +LG+G  G+V+  +  D   ++AVK  ++ G  +  L+    ++ ILS + + N+V+  G
Sbjct: 7   LLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYG 66

Query: 78  CCL-ETEVPLLVY-EYIPNGNLSDYLH 102
               E +  L ++ EY+  G+LS  L 
Sbjct: 67  SERDEEKNTLNIFLEYVSGGSLSSLLK 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|133216 cd05085, PTKc_Fer, Catalytic domain of the Protein Tyrosine Kinase, Fer

 Score = 55.4 bits (133), Expect = 9e-10
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 3/111 (2%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLD-EFINKVVILSQINYRNVVKLLGCC 79
           +LG+G  G V KG L D+  VAVK  K     +L  +F+++  IL Q ++ N+VKL+G C
Sbjct: 2   LLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVC 61

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDFVKD--VGFILSRRGGIPRLKRK 128
            + +   +V E +P G+   +L ++ ++      V F L    G+  L+ K
Sbjct: 62  TQRQPIYIVMELVPGGDFLSFLRKKKDELKTKQLVKFALDAAAGMAYLESK 112

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. Length = 250

>gnl|CDD|133243 cd05112, PTKc_Itk, Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

 Score = 54.2 bits (130), Expect = 2e-09
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 1/98 (1%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
             L +   +G G  G V  G   ++R VA+K  +  G    ++FI +  ++ ++++  +V
Sbjct: 4   SELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIRE-GAMSEEDFIEEAQVMMKLSHPKLV 62

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKD 111
           +L G C E     LV+E++ +G LSDYL  Q   F ++
Sbjct: 63  QLYGVCTERSPICLVFEFMEHGCLSDYLRAQRGKFSQE 100

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Itk contains the Tec homology (TH) domain containing one proline-rich region and a zinc-binding region. Tec kinases are expressed mainly by haematopoietic cells. Itk is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, Itk plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, Itk is crucial for the development of T-helper(Th)2 effector responses. Length = 256

>gnl|CDD|173637 cd05059, PTKc_Tec_like, Catalytic domain of Tec-like Protein Tyrosine Kinases

 Score = 54.0 bits (130), Expect = 2e-09
 Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 1/87 (1%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G VH G    +  VA+K  +  G    D+FI +  ++ ++++ N+V+L G C +
Sbjct: 12  LGSGQFGVVHLGKWRGKIDVAIKMIRE-GAMSEDDFIEEAKVMMKLSHPNLVQLYGVCTK 70

Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDF 108
                +V EY+ NG L +YL E+    
Sbjct: 71  QRPIFIVTEYMANGCLLNYLRERKGKL 97

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases form the second largest subfamily of nRTKs and are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. Mutations in Btk cause the severe B-cell immunodeficiency, X-linked agammaglobulinaemia (XLA). Length = 256

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 2/99 (2%)

Query: 20  IVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
             +G+GG G V+K       + VA+K  K+  K K ++ IN++ IL +  + N+VK  G 
Sbjct: 6   EKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGS 65

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQNEDFV-KDVGFIL 116
            L+ +   +V E+   G+L D L   N+      + ++ 
Sbjct: 66  YLKKDELWIVMEFCSGGSLKDLLKSTNQTLTESQIAYVC 104

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|133179 cd05048, PTKc_Ror, Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

 Score = 53.2 bits (128), Expect = 6e-09
 Identities = 29/95 (30%), Positives = 53/95 (55%), Gaps = 9/95 (9%)

Query: 22  LGQGGQGTVHKG--MLADER----IVAVKKSKVVGKGKL-DEFINKVVILSQINYRNVVK 74
           LG+G  G V+KG     +ER     VA+K  K   + K+  EF  +  ++S + + N+V 
Sbjct: 13  LGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVC 72

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYL--HEQNED 107
           LLG C + +   +++EY+ +G+L ++L  +  + D
Sbjct: 73  LLGVCTKEQPTCMLFEYLAHGDLHEFLVRNSPHSD 107

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. They play important roles in bone and heart formation. Mutations in human Ror2 result in two different bone development genetic disorders, recessive Robinow syndrome and brachydactyly type B. Drosophila Ror is expressed only in the developing nervous system during neurite outgrowth and neuronal differentiation, suggesting a role for Drosophila Ror in neural development. More recently, mouse Ror1 and Ror2 have also been found to play an important role in regulating neurite growth in central neurons. Ror1 and Ror2 are believed to have some overlapping and redundant functions. Length = 283

>gnl|CDD|173633 cd05052, PTKc_Abl, Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

 Score = 52.9 bits (127), Expect = 6e-09
 Identities = 33/93 (35%), Positives = 51/93 (54%), Gaps = 4/93 (4%)

Query: 22  LGQGGQGTVHKGMLAD-ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           LG G  G V++G+       VAVK  K     +++EF+ +  ++ +I + N+V+LLG C 
Sbjct: 14  LGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCT 72

Query: 81  ETEVPL-LVYEYIPNGNLSDYLHEQNEDFVKDV 112
             E P  ++ E++  GNL DYL E N   V  V
Sbjct: 73  R-EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 104

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays a role in cell proliferation and survival. In response to DNA damage or oxidative stress, Abl is transported to the nucleus where it induces apoptosis. In chronic myelogenous leukemia (CML) patients, an aberrant translocation results in the replacement of the first exon of Abl with the BCR (breakpoint cluster region) gene. The resulting BCR-Abl fusion protein is constitutively active and associates into tetramers, resulting in a hyperactive kinase sending a continuous signal. This leads to uncontrolled proliferation, morphological transformation and anti-apoptotic effects. BCR-Abl is the target of selective inhibitors, such as imatinib (Gleevec), used in the treatment of CML. Abl2, also known as ARG (Abelson-related gene), is thought to play a cooperative role with Abl in the proper development of the nervous system. The Tel-ARG fusion protein, resulting from reciprocal translocation between chromosomes 1 and 12, is associated with acute myeloid leukemia (AML). The TEL gene is a frequent fusion partner of other tyr kinase oncogenes, including Tel/Abl, Tel/PDGFRbeta, and Tel/Jak2, found in patients with leukemia and myeloproliferative disorders. Length = 263

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 34/132 (25%), Positives = 59/132 (44%), Gaps = 21/132 (15%)

Query: 22  LGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGKLD---EFINKVVILSQINYRNV 72
           LGQG  G V++G+         E  VA+K   V     +    EF+N+  ++ + N  +V
Sbjct: 14  LGQGSFGMVYEGLAKGVVKGEPETRVAIKT--VNENASMRERIEFLNEASVMKEFNCHHV 71

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKN 132
           V+LLG     +  L+V E +  G+L  YL  +  +   + G       G P L++  +  
Sbjct: 72  VRLLGVVSTGQPTLVVMELMAKGDLKSYLRSRRPEAENNPGL------GPPTLQKFIQ-- 123

Query: 133 KIWKQQLLKGLA 144
                ++  G+A
Sbjct: 124 --MAAEIADGMA 133

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133165 cd05033, PTKc_EphR, Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 29/95 (30%), Positives = 51/95 (53%), Gaps = 7/95 (7%)

Query: 21  VLGQGGQGTVHKGMLA----DERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVK 74
           V+G G  G V +G L      E  VA+K  K+    K +LD F+ +  I+ Q ++ N+++
Sbjct: 11  VIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLD-FLTEASIMGQFDHPNIIR 69

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           L G   ++   +++ EY+ NG+L  +L E +  F 
Sbjct: 70  LEGVVTKSRPVMIITEYMENGSLDKFLRENDGKFT 104

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. This allows ephrin/EphR dimers to form, leading to the activation of the intracellular tyr kinase domain. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). The main effect of ephrin/EphR interaction is cell-cell repulsion or adhesion. Ephrin/EphR signaling is important in neural development and plasticity, cell morphogenesis and proliferation, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173630 cd05044, PTKc_c-ros, Catalytic domain of the Protein Tyrosine Kinase, C-ros

 Score = 51.0 bits (122), Expect = 3e-08
 Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 14/91 (15%)

Query: 22  LGQGGQGTVHKGMLAD-------ERIVAVKKSKVVGKGKLD----EFINKVVILSQINYR 70
           LG G  G V++G   D          VAVK  +   KG  D    EF+ +  ++S  N+ 
Sbjct: 3   LGSGAFGEVYEGTATDILGPGSGPIRVAVKTLR---KGATDQEKKEFLKEAHLMSNFNHP 59

Query: 71  NVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           N+VKLLG CL  E   ++ E +  G+L  YL
Sbjct: 60  NIVKLLGVCLLNEPQYIIMELMEGGDLLSYL 90

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male mice bearing inactive mutations of c-ros lack the initial segment of the epididymis and are infertile. The Drosophila protein, Sevenless, is required for the specification of the R7 photoreceptor cell during eye development. Length = 269

>gnl|CDD|133167 cd05035, PTKc_Axl_like, Catalytic Domain of Axl-like Protein Tyrosine Kinases

 Score = 50.6 bits (121), Expect = 4e-08
 Identities = 25/93 (26%), Positives = 51/93 (54%), Gaps = 12/93 (12%)

Query: 21  VLGQGGQGTVHKGMLADERI----VAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVK 74
           +LG+G  G+V +G L+ +      VAVK  K+      +++EF+++   +   ++ NV+K
Sbjct: 6   ILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMK 65

Query: 75  LLGCCLETE------VPLLVYEYIPNGNLSDYL 101
           L+G C E         P+++  ++ +G+L  +L
Sbjct: 66  LIGVCFEASSLQKIPKPMVILPFMKHGDLHSFL 98

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellular effects including survival, proliferation, migration, and phagocytosis. They are also associated with several types of cancer as well as inflammatory, autoimmune, vascular, and kidney diseases. Mer is named after its original reported expression pattern (monocytes, epithelial, and reproductive tissues). It is required for the ingestion of apoptotic cells by phagocytes such as macrophages, retinal pigment epithelial cells, and dendritic cells. Mer is also important in maintaining immune homeostasis. Length = 273

>gnl|CDD|133171 cd05039, PTKc_Csk_like, Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)

Query: 15  HLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVK 74
            L +   +G+G  G V  G    ++ VAVK  K         F+ +  +++ + + N+V+
Sbjct: 7   ELKLGATIGKGEFGDVMLGDYRGQK-VAVKCLKDDSTAA-QAFLAEASVMTTLRHPNLVQ 64

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYL 101
           LLG  L+     +V EY+  G+L DYL
Sbjct: 65  LLGVVLQGNPLYIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As negative regulators of Src kinases, Csk and Chk play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Length = 256

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 49.6 bits (119), Expect = 8e-08
 Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 15  HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGK--LDEFINKVVILSQINYRN 71
           +  +  ++G+G  G V+KG+ L     VA+K+  +    +  L   + ++ +L  + + N
Sbjct: 1   NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPN 60

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           +VK +G    ++   ++ EY  NG+L   + 
Sbjct: 61  IVKYIGSIETSDSLYIILEYAENGSLRQIIK 91

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|173655 cd05110, PTKc_HER4, Catalytic domain of the Protein Tyrosine Kinase, HER4

 Score = 49.7 bits (118), Expect = 1e-07
 Identities = 33/93 (35%), Positives = 58/93 (62%), Gaps = 7/93 (7%)

Query: 21  VLGQGGQGTVHKGMLADE----RI-VAVK-KSKVVGKGKLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E    +I VA+K  ++  G     EF+++ +I++ +++ ++V+
Sbjct: 14  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 73

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
           LLG CL   +  LV + +P+G L DY+HE  ++
Sbjct: 74  LLGVCLSPTIQ-LVTQLMPHGCLLDYVHEHKDN 105

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands that bind HER4 fall into two groups, the neuregulins (or heregulins) and some EGFR (HER1) ligands including betacellulin, HBEGF, and epiregulin. All four neuregulins (NRG1-4) interact with HER4. Upon ligand binding, HER4 forms homo- or heterodimers with other HER proteins. HER4 is essential in embryonic development. It is implicated in mammary gland, cardiac, and neural development. As a postsynaptic receptor of NRG1, HER4 plays an important role in synaptic plasticity and maturation. The impairment of NRG1/HER4 signaling may contribute to schizophrenia. Length = 303

>gnl|CDD|173628 cd05038, PTKc_Jak_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 49.3 bits (118), Expect = 1e-07
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 8/93 (8%)

Query: 22  LGQGGQGTVHKGMLADER-----IVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKL 75
           LG+G  G V               VAVK     G+ +   +F  ++ IL  +++ N+VK 
Sbjct: 12  LGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKY 71

Query: 76  LGCCLET--EVPLLVYEYIPNGNLSDYLHEQNE 106
            G C +       L+ EY+P+G+L DYL    +
Sbjct: 72  KGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRD 104

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 284

>gnl|CDD|173631 cd05045, PTKc_RET, Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

 Score = 49.2 bits (117), Expect = 2e-07
 Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 7/95 (7%)

Query: 16  LNVNIVLGQGGQGTVHKGM------LADERIVAVKKSKV-VGKGKLDEFINKVVILSQIN 68
           L +   LG+G  G V K         A    VAVK  K      +L + +++  +L Q+N
Sbjct: 2   LVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVN 61

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           + +V+KL G C +    LL+ EY   G+L  +L E
Sbjct: 62  HPHVIKLYGACSQDGPLLLIVEYAKYGSLRSFLRE 96

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leading to autophosphorylation, activation, and intracellular signaling. RET is essential for the development of the sympathetic, parasympathetic and enteric nervous systems, and the kidney. RET disruption by germline mutations causes diseases in humans including congenital aganglionosis of the gastrointestinal tract (Hirschsprung's disease) and three related inherited cancers: multiple endocrine neoplasia type 2A (MEN2A), MEN2B, and familial medullary thyroid carcinoma (FMTC). Length = 290

>gnl|CDD|133181 cd05050, PTKc_Musk, Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 27/87 (31%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 22  LGQGGQGTVHK----GMLADER--IVAVKKSKVVGKGKLD-EFINKVVILSQINYRNVVK 74
           +GQG  G V +    G+L  E   +VAVK  K      +  +F  +  ++++ ++ N+VK
Sbjct: 13  IGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVK 72

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYL 101
           LLG C   +   L++EY+  G+L+++L
Sbjct: 73  LLGVCAVGKPMCLLFEYMAYGDLNEFL 99

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates Musk autophosphorylation and activation, leading to the clustering of acetylcholine receptors (AChRs). To date, there is no evidence to suggest that agrin binds directly to Musk. Mutations in AChR, Musk and other partners are responsible for diseases of the NMJ, such as the autoimmune syndrome myasthenia gravis. Length = 288

>gnl|CDD|133191 cd05060, PTKc_Syk_like, Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 8/97 (8%)

Query: 22  LGQGGQGTVHKGML----ADERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKL 75
           LG G  G+V KG+       E  VAVK  K + +  GK  EF+ +  +++Q+++  +V+L
Sbjct: 3   LGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGK-KEFLREASVMAQLDHPCIVRL 61

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           +G C   E  +LV E  P G L  YL ++ E  V D+
Sbjct: 62  IGVCKG-EPLMLVMELAPLGPLLKYLKKRREIPVSDL 97

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. Syk is important in B-cell receptor (BCR) signaling, while Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Syk also plays a central role in Fc receptor-mediated phagocytosis in the adaptive immune system. Shark is exclusively expressed in ectodermally derived epithelia, and is localized preferentially to the apical surface of the epithelial cells, it may play a role in a signaling pathway for epithelial cell polarity. Length = 257

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 48.3 bits (115), Expect = 3e-07
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQ 66
           E +   D     +VLG+G  G V+    L+ +  +A+K+        +     ++ + S 
Sbjct: 2   EYEYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSY 61

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           + +RN+V+ LG   E     +  E +P G+LS  L
Sbjct: 62  LKHRNIVQYLGSDSENGFFKIFMEQVPGGSLSALL 96

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|173636 cd05057, PTKc_EGFR_like, Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 28/89 (31%), Positives = 49/89 (55%), Gaps = 7/89 (7%)

Query: 21  VLGQGGQGTVHKGMLADE----RI-VAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E    +I VA+K   +        E +++  +++ +++ +VV+
Sbjct: 14  VLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVR 73

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           LLG CL +    L+ + +P G L DY+  
Sbjct: 74  LLGICL-SSQVQLITQLMPLGCLLDYVRN 101

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, resulting in the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Collectively, they can recognize a variety of ligands including EGF, TGFalpha, and neuregulins, among others. All four subfamily members can form homo- or heterodimers. HER3 contains an impaired kinase domain and depends on its heterodimerization partner for activation. EGFR subfamily members are involved in signaling pathways leading to a broad range of cellular responses including cell proliferation, differentiation, migration, growth inhibition, and apoptosis. Gain of function alterations, through their overexpression, deletions, or point mutations in their kinase domains, have been implicated in various cancers. These receptors are targets of many small molecule inhibitors and monoclonal antibodies used in cancer therapy. Length = 279

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 48.0 bits (115), Expect = 3e-07
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 13  TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN 71
            +       +G+G  G V+K    A  + VA+KK ++  K   +  IN+++I+    + N
Sbjct: 18  RELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRL-RKQNKELIINEILIMKDCKHPN 76

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSD 99
           +V      L  +   +V EY+  G+L+D
Sbjct: 77  IVDYYDSYLVGDELWVVMEYMDGGSLTD 104

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173642 cd05075, PTKc_Axl, Catalytic domain of the Protein Tyrosine Kinase, Axl

 Score = 47.7 bits (113), Expect = 5e-07
 Identities = 27/91 (29%), Positives = 56/91 (61%), Gaps = 11/91 (12%)

Query: 22  LGQGGQGTVHKGML-ADERI--VAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLL 76
           LG+G  G+V +G L  D+ I  VAVK  K+    + ++++F+++ V + + ++ NV++L+
Sbjct: 7   LGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLI 66

Query: 77  GCCLETE------VPLLVYEYIPNGNLSDYL 101
           G CL+T        P+++  ++ +G+L  +L
Sbjct: 67  GVCLQTVESEGYPSPVVILPFMKHGDLHSFL 97

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transformed cells. Axl signaling is important in many cellular functions such as survival, anti-apoptosis, proliferation, migration, and adhesion. Axl was originally isolated from patients with chronic myelogenous leukemia and a chronic myeloproliferative disorder. Axl is overexpressed in many human cancers including colon, squamous cell, thyroid, breast, and lung carcinomas. Length = 272

>gnl|CDD|133228 cd05097, PTKc_DDR_like, Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 29/99 (29%), Positives = 53/99 (53%), Gaps = 16/99 (16%)

Query: 22  LGQGGQGTVHK----------GMLADER-----IVAVKKSKV-VGKGKLDEFINKVVILS 65
           LG+G  G VH           G  A E      +VAVK  +  V K   ++F+ ++ I+S
Sbjct: 13  LGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMS 72

Query: 66  QINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ 104
           ++   N+++LLG C+  +   ++ EY+ NG+L+ +L ++
Sbjct: 73  RLKNPNIIRLLGVCVSDDPLCMITEYMENGDLNQFLSQR 111

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including breast, colon, ovarian, brain, and lung. There is no evidence showing that DDRs act as transforming oncogenes. They are more likely to play a role in the regulation of tumor growth and metastasis. Length = 295

>gnl|CDD|133194 cd05063, PTKc_EphR_A2, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

 Score = 47.3 bits (112), Expect = 7e-07
 Identities = 29/100 (29%), Positives = 53/100 (53%), Gaps = 7/100 (7%)

Query: 15  HLNVNIVLGQGGQGTVHKGMLA----DERIVAVK--KSKVVGKGKLDEFINKVVILSQIN 68
           H+    V+G G  G V +G+L      E  VA+K  K     K + D F+++  I+ Q +
Sbjct: 6   HITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQD-FLSEASIMGQFS 64

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           + N+++L G   + +  +++ EY+ NG L  YL + + +F
Sbjct: 65  HHNIIRLEGVVTKFKPAMIITEYMENGALDKYLRDHDGEF 104

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. The EphA2 receptor is overexpressed in tumor cells and tumor blood vessels in a variety of cancers including breast, prostate, lung, and colon. As a result, it is an attractive target for drug design since its inhibition could affect several aspects of tumor progression. Length = 268

>gnl|CDD|133168 cd05036, PTKc_ALK_LTK, Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

 Score = 47.0 bits (112), Expect = 7e-07
 Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 21  VLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGKLDE-FINKVVILSQINYRNVV 73
            LG G  G V++G+       A E  VAVK        + +  F+ + +I+S+ N++N+V
Sbjct: 13  ALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIV 72

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           +L+G   E     ++ E +  G+L  +L E
Sbjct: 73  RLIGVSFERLPRFILLELMAGGDLKSFLRE 102

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well as visceral muscle differentiation in Drosophila. ALK is aberrantly expressed as fusion proteins, due to chromosomal translocations, in about 60% of anaplastic large cell lymphomas (ALCLs). ALK fusion proteins are also found in rare cases of diffuse large B cell lymphomas (DLBCLs). LTK is mainly expressed in B lymphocytes and neuronal tissues. It is important in cell proliferation and survival. Transgenic mice expressing TLK display retarded growth and high mortality rate. In addition, a polymorphism in mouse and human LTK is implicated in the pathogenesis of systemic lupus erythematosus. Length = 277

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 33/130 (25%), Positives = 64/130 (49%), Gaps = 26/130 (20%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKK------SKVVGKGKLDEFINKVVILSQINYRNVVK 74
           VLG+G  GTV+ G+    +++AVK+      + +  + + ++   +V +L  + + N+V+
Sbjct: 7   VLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQ 66

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKI 134
            LG CL+     +  E++P G++S                IL+R G +P     K     
Sbjct: 67  YLGTCLDDNTISIFMEFVPGGSISS---------------ILNRFGPLPEPVFCK----- 106

Query: 135 WKQQLLKGLA 144
           + +Q+L G+A
Sbjct: 107 YTKQILDGVA 116

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|133187 cd05056, PTKc_FAK, Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 9/102 (8%)

Query: 21  VLGQGGQGTVHKGM---LADERI-VAVKKSKVVGKGKLDE-FINKVVILSQINYRNVVKL 75
            +G+G  G V++G+     +E+I VAVK  K      + E F+ +  I+ Q ++ ++VKL
Sbjct: 13  CIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKL 72

Query: 76  LGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           +G    TE P+ +V E  P G L  YL + N+  +     IL
Sbjct: 73  IGVI--TENPVWIVMELAPLGELRSYL-QVNKYSLDLASLIL 111

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions and at growth factor receptors. Through diverse molecular interactions, FAK functions as a biosensor or integrator to control cell motility. It is a key regulator of cell survival, proliferation, migration and invasion, and thus plays an important role in the development and progression of cancer. Src binds to autophosphorylated FAK forming the FAK-Src dual kinase complex, which is activated in a wide variety of tumor cells and generates signals promoting growth and metastasis. FAK is being developed as a target for cancer therapy. Length = 270

>gnl|CDD|173654 cd05108, PTKc_EGFR, Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

 Score = 45.8 bits (108), Expect = 2e-06
 Identities = 30/92 (32%), Positives = 53/92 (57%), Gaps = 7/92 (7%)

Query: 21  VLGQGGQGTVHKGMLADE----RI-VAVKKSKVVGKGKLD-EFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E    +I VA+K+ +     K + E +++  +++ ++  +V +
Sbjct: 14  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 73

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           LLG CL + V  L+ + +P G L DY+ E  +
Sbjct: 74  LLGICLTSTVQ-LITQLMPFGCLLDYVREHKD 104

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. Ligands for EGFR include EGF, heparin binding EGF-like growth factor (HBEGF), epiregulin, amphiregulin, TGFalpha, and betacellulin. Upon ligand binding, EGFR can form homo- or heterodimers with other EGFR subfamily members. The EGFR signaling pathway is one of the most important pathways regulating cell proliferation, differentiation, survival, and growth. Overexpression and mutation in the kinase domain of EGFR have been implicated in the development and progression of a variety of cancers. A number of monoclonal antibodies and small molecule inhibitors have been developed that target EGFR, including the antibodies Cetuximab and Panitumumab, which are used in combination with other therapies for the treatment of colorectal cancer and non-small cell lung carcinoma (NSCLC). The small molecule inhibitors Gefitinib (Iressa) and Erlotinib (Tarceva), already used for NSCLC, are undergoing clinical trials for other types of cancer including gastrointestinal, breast, head and neck, and bladder. Length = 316

>gnl|CDD|173649 cd05093, PTKc_TrkB, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 10/101 (9%)

Query: 19  NIVLGQG-GQGTVHKGMLA---------DERIVAVKKSKVVGKGKLDEFINKVVILSQIN 68
           NIVL +  G+G   K  LA         D+ +VAVK  K        +F  +  +L+ + 
Sbjct: 6   NIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQ 65

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           + ++VK  G C+E +  ++V+EY+ +G+L+ +L     D V
Sbjct: 66  HEHIVKFYGVCVEGDPLIMVFEYMKHGDLNKFLRAHGPDAV 106

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly expressed in the nervous system and in some non-neural tissues. It plays important roles in cell proliferation, differentiation, and survival. BDNF/Trk signaling plays a key role in regulating activity-dependent synaptic plasticity. TrkB also contributes to protection against gp120-induced neuronal cell death. TrkB overexpression is associated with poor prognosis in neuroblastoma (NB) and other human cancers. It acts as a suppressor of anoikis (detachment-induced apoptosis) and contributes to tumor metastasis. Length = 288

>gnl|CDD|173648 cd05092, PTKc_TrkA, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

 Score = 45.0 bits (106), Expect = 4e-06
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 6/92 (6%)

Query: 22  LGQGGQGTVHKGMLA------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKL 75
           LG+G  G V            D+ +VAVK  K   +    +F  +  +L+ + ++++V+ 
Sbjct: 13  LGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRF 72

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
            G C E    L+V+EY+ +G+L+ +L     D
Sbjct: 73  YGVCTEGRPLLMVFEYMRHGDLNRFLRSHGPD 104

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory and sympathetic neurons of the peripheral nervous system, and in basal forebrain cholinergic neurons of the central nervous system. It is critical for neuronal growth, differentiation and survival. Alternative TrkA splicing has been implicated as a pivotal regulator of neuroblastoma (NB) behavior. Normal TrkA expression is associated with better NB prognosis, while the hypoxia-regulated TrkAIII splice variant promotes NB pathogenesis and progression. Aberrant TrkA expression has also been demonstrated in non-neural tumors including prostate, breast, lung, and pancreatic cancers. Length = 280

>gnl|CDD|133178 cd05046, PTK_CCK4, Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

 Score = 44.8 bits (106), Expect = 5e-06
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 15  HLNVNIVLGQGGQGTVHKGML------ADERIVAVKK-SKVVGKGKLDEFINKVVILSQI 67
           +L     LG+G  G V             E +V VK   K   +    EF  ++ +  ++
Sbjct: 6   NLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKL 65

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           +++NVV+LLG C E E   ++ EY   G+L  +L
Sbjct: 66  SHKNVVRLLGLCREAEPHYMILEYTDLGDLKQFL 99

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is still unknown. Other pseudokinases such as HER3 rely on the activity of partner RTKs. Length = 275

>gnl|CDD|173657 cd05113, PTKc_Btk_Bmx, Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 1/87 (1%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V  G    +  VA+K  K  G    DEFI +  ++ ++++  +V+L G C +
Sbjct: 12  LGTGQFGVVKYGKWRGQYDVAIKMIKE-GSMSEDEFIEEAKVMMKLSHEKLVQLYGVCTK 70

Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDF 108
                +V EY+ NG L +YL E  + F
Sbjct: 71  QRPIYIVTEYMSNGCLLNYLREHGKRF 97

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, Btk contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. Bmx is primarily expressed in bone marrow and the arterial endothelium, and plays an important role in ischemia-induced angiogenesis. It facilitates arterial growth, capillary formation, vessel maturation, and bone marrow-derived endothelial progenitor cell mobilization. Length = 256

>gnl|CDD|133233 cd05102, PTKc_VEGFR3, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

 Score = 45.0 bits (106), Expect = 5e-06
 Identities = 36/106 (33%), Positives = 50/106 (47%), Gaps = 13/106 (12%)

Query: 14  DHLNVNIVLGQGGQGTV--------HKGMLADERIVAVKKSKV-VGKGKLDEFINKVVIL 64
           D L +  VLG G  G V         K    +   VAVK  K      +    ++++ IL
Sbjct: 7   DRLRLGKVLGHGAFGKVVEASAFGIDKKSSCN--TVAVKMLKEGATASEHKALMSELKIL 64

Query: 65  SQI-NYRNVVKLLGCCLETEVPLLV-YEYIPNGNLSDYLHEQNEDF 108
             I N+ NVV LLG C +   PL+V  E+   GNLS++L  + E F
Sbjct: 65  IHIGNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFF 110

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. VEGFR3 preferentially binds the ligands VEGFC and VEGFD. VEGFR3 is essential for lymphatic endothelial cell (EC) development and function. It has been shown to regulate adaptive immunity during corneal transplantation. VEGFR3 is upregulated on blood vascular ECs in pathological conditions such as vascular tumors and the periphery of solid tumors. It plays a role in cancer progression and lymph node metastasis. Missense mutations in the VEGFR3 gene are associated with primary human lymphedema. Length = 338

>gnl|CDD|173626 cd05034, PTKc_Src_like, Catalytic domain of Src kinase-like Protein Tyrosine Kinases

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 1/82 (1%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V  G       VAVK  K  G    + F+ +  I+ ++ +  +V+L   C E
Sbjct: 14  LGAGQFGEVWMGTWNGTTKVAVKTLKP-GTMSPEAFLQEAQIMKKLRHDKLVQLYAVCSE 72

Query: 82  TEVPLLVYEYIPNGNLSDYLHE 103
            E   +V EY+  G+L D+L  
Sbjct: 73  EEPIYIVTEYMSKGSLLDFLKS 94

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, and Lyn show a limited expression pattern. Length = 261

>gnl|CDD|173635 cd05054, PTKc_VEGFR, Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

 Score = 44.5 bits (105), Expect = 6e-06
 Identities = 37/105 (35%), Positives = 50/105 (47%), Gaps = 9/105 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHK------GMLADERIVAVKKSKVVGK-GKLDEFINKVVILSQ 66
           D L +   LG+G  G V +         A  R VAVK  K      +    + ++ IL  
Sbjct: 7   DRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIH 66

Query: 67  I-NYRNVVKLLGCCLETEVPLLV-YEYIPNGNLSDYLHEQNEDFV 109
           I ++ NVV LLG C +   PL+V  EY   GNLS+YL  + E F 
Sbjct: 67  IGHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFS 111

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. There are five VEGF ligands in mammals, which bind, in an overlapping pattern to the three VEGFRs, which can form homo or heterodimers. VEGFRs regulate the cardiovascular system. They are critical for vascular development during embryogenesis and blood vessel formation in adults. They induce cellular functions common to other growth factor receptors such as cell migration, survival, and proliferation. VEGFR1 binds VEGFA, VEGFB, and placenta growth factor (PLGF). It regulates monocyte and macrophage migration, vascular permeability, haematopoiesis, and the recruitment of haematopietic progenitor cells from the bone marrow. Length = 337

>gnl|CDD|133227 cd05096, PTKc_DDR1, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

 Score = 44.5 bits (105), Expect = 7e-06
 Identities = 22/70 (31%), Positives = 43/70 (61%), Gaps = 2/70 (2%)

Query: 40  IVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLS 98
           +VAVK  +    K   ++F+ +V ILS++   N+++LLG C++ +   ++ EY+ NG+L+
Sbjct: 48  LVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIRLLGVCVDEDPLCMITEYMENGDLN 107

Query: 99  DYL-HEQNED 107
            +L     +D
Sbjct: 108 QFLSSHHLDD 117

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in keratinocytes, colonic mucosa epithelium, lung epithelium, thyroid follicles, and the islets of Langerhans. During embryonic development, it is found in the developing neuroectoderm. DDR1 is a key regulator of cell morphogenesis, differentiation and proliferation. It is important in the development of the mammary gland, the vasculator and the kidney. DDR1 is also found in human leukocytes, where it facilitates cell adhesion, migration, maturation, and cytokine production. Length = 304

>gnl|CDD|173645 cd05084, PTKc_Fes, Catalytic domain of the Protein Tyrosine Kinase, Fes

 Score = 44.2 bits (104), Expect = 8e-06
 Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 22  LGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKL-DEFINKVVILSQINYRNVVKLLGCC 79
           +G+G  G V  G L AD   VAVK  +      L  +F+ +  IL Q ++ N+V+L+G C
Sbjct: 3   IGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVC 62

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQ 104
            + +   +V E +  G+   +L  +
Sbjct: 63  TQKQPIYIVMELVQGGDFLTFLRTE 87

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells. It plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. A recent study implicates Fes kinase as a tumor suppressor in colorectal cancer. Length = 252

>gnl|CDD|133212 cd05081, PTKc_Jak2_Jak3_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 7/99 (7%)

Query: 15  HLNVNIVLGQGGQGTVHK---GMLADE--RIVAVKKSKVVGKGKLDEFINKVVILSQINY 69
           HL     LG+G  G+V       L D    +VAVKK +      L +F  ++ IL  + +
Sbjct: 5   HLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQH 64

Query: 70  RNVVKLLGCCLETEVP--LLVYEYIPNGNLSDYLHEQNE 106
            N+VK  G C         LV EY+P G+L DYL +  E
Sbjct: 65  DNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRE 103

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 284

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 44.0 bits (102), Expect = 1e-05
 Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 6/87 (6%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVK--KSKVVGKGKLDE-FINKVVILSQINY-RNVVKLL 76
            LG+G  G V+     D ++VA+K    K+  K K  E F+ ++ IL+ +N+  N+VKL 
Sbjct: 7   KLGEGSFGEVYLAR--DRKLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLY 64

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHE 103
               +     LV EY+  G+L D L +
Sbjct: 65  DFFQDEGSLYLVMEYVDGGSLEDLLKK 91

Length = 384

>gnl|CDD|173651 cd05095, PTKc_DDR2, Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 20/109 (18%)

Query: 22  LGQGGQGTVH----KGML--ADER-----------IVAVKKSKV-VGKGKLDEFINKVVI 63
           LG+G  G VH    +GM    D+            +VAVK  +    K   ++F+ ++ I
Sbjct: 13  LGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKI 72

Query: 64  LSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL--HEQNEDFVK 110
           +S++   N+++LL  C+ ++   ++ EY+ NG+L+ +L  HE  E   K
Sbjct: 73  MSRLKDPNIIRLLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEK 121

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues with the highest levels found in skeletal muscle, skin, kidney and lung. It is important in cell proliferation and development. Mice, with a deletion of DDR2, suffer from dwarfism and delayed healing of epidermal wounds. DDR2 also contributes to collagen (type I) regulation by inhibiting fibrillogenesis and altering the morphology of collagen fibers. It is also expressed in immature dendritic cells (DCs), where it plays a role in DC activation and function. Length = 296

>gnl|CDD|173771 cd08529, STKc_FA2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 22/86 (25%), Positives = 45/86 (52%), Gaps = 3/86 (3%)

Query: 22  LGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLD--EFINKVVILSQINYRNVVKLLGC 78
           +G+G  G V K +  AD+R+ A+K+  +    + +  E I++  +L++++   +++    
Sbjct: 8   IGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYES 67

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQ 104
            L+     +V EY  NG+L   L  Q
Sbjct: 68  FLDKGKLNIVMEYAENGDLHKLLKMQ 93

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cycle progression. No cellular function has yet been ascribed to CNK4. Length = 256

>gnl|CDD|132978 cd06647, STKc_PAK_I, Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 24/83 (28%), Positives = 48/83 (57%), Gaps = 1/83 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +GQG  GTV+  + +A  + VA+K+  +  + K +  IN+++++ +  + N+V  L   L
Sbjct: 27  IGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYL 86

Query: 81  ETEVPLLVYEYIPNGNLSDYLHE 103
             +   +V EY+  G+L+D + E
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTE 109

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs, also called conventional PAKs, include PAK1, PAK2, and PAK3. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). They interact with the SH3 domain containing proteins Nck, Grb2 and PIX. Binding of group I PAKs to activated GTPases leads to conformational changes that destabilize the AID, allowing autophosphorylation and full activation of the kinase domain. Known group I PAK substrates include MLCK, Bad, Raf, MEK1, LIMK, Merlin, Vimentin, Myc, Stat5a, and Aurora A, among others. Length = 293

>gnl|CDD|133234 cd05103, PTKc_VEGFR2, Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

 Score = 42.7 bits (100), Expect = 3e-05
 Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 9/105 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHKG------MLADERIVAVKKSKV-VGKGKLDEFINKVVILSQ 66
           D L +   LG+G  G V +         A  R VAVK  K      +    ++++ IL  
Sbjct: 7   DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 66

Query: 67  INYR-NVVKLLGCCLETEVPLLV-YEYIPNGNLSDYLHEQNEDFV 109
           I +  NVV LLG C +   PL+V  E+   GNLS+YL  +  +FV
Sbjct: 67  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFV 111

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosphorylation and activation. VEGFR2 binds the ligands VEGFA, VEGFC, VEGFD and VEGFE. VEGFR2 signaling is implicated in all aspects of normal and pathological vascular endothelial cell biology. It induces a variety of cellular effects including migration, survival, and proliferation. It is critical in regulating embryonic vascular development and angiogenesis. VEGFR2 is the major signal transducer in pathological angiogenesis including cancer and diabetic retinopathy, and is a target for inhibition in cancer therapy. Length = 343

>gnl|CDD|133211 cd05080, PTKc_Tyk2_rpt2, Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%)

Query: 40  IVAVKKSKVVGKGKLDE-FINKVVILSQINYRNVVKLLGCCLET--EVPLLVYEYIPNGN 96
           +VAVK  K     +    +  ++ IL  + + N+VK  GCC E   +   L+ EY+P G+
Sbjct: 35  MVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQLIMEYVPLGS 94

Query: 97  LSDYLHEQN 105
           L DYL +  
Sbjct: 95  LRDYLPKHK 103

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Tyk2 is widely expressed in many tissues. It is involved in signaling via the cytokine receptors IFN-alphabeta, IL-6, IL-10, IL-12, IL-13, and IL-23. It mediates cell surface urokinase receptor (uPAR) signaling and plays a role in modulating vascular smooth muscle cell (VSMC) functional behavior in response to injury. Tyk2 is also important in dendritic cell function and T helper (Th)1 cell differentiation. A homozygous mutation of Tyk2 was found in a patient with hyper-IgE syndrome (HIES), a primary immunodeficiency characterized by recurrent skin abscesses, pneumonia, and elevated serum IgE. This suggests that Tyk2 may play important roles in multiple cytokine signaling involved in innate and adaptive immunity. Length = 283

>gnl|CDD|173627 cd05037, PTK_Jak_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

 Score = 42.1 bits (99), Expect = 4e-05
 Identities = 38/146 (26%), Positives = 63/146 (43%), Gaps = 34/146 (23%)

Query: 22  LGQGGQGTVHKGML---ADERIVAVKKS-----KVVGKGKLD--EFINKVVILSQINYRN 71
           LGQG    ++KG+L   +D  IV   +      KV+G    D   F     ++SQ+++++
Sbjct: 3   LGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRDSLAFFETASLMSQLSHKH 62

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKK 131
           +VKL G C+  E  ++V EY+  G L  +LH +              +  +         
Sbjct: 63  LVKLYGVCVRDEN-IMVEEYVKFGPLDVFLHRE--------------KNNVSLH------ 101

Query: 132 NKIWKQQLLKGLAPKRKKFEEEKWRH 157
              WK  + K LA      E++K  H
Sbjct: 102 ---WKLDVAKQLASALHYLEDKKLVH 124

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jaks are also involved in regulating the surface expression of some cytokine receptors. The Jak-STAT pathway is involved in many biological processes including hematopoiesis, immunoregulation, host defense, fertility, lactation, growth, and embryogenesis. Length = 259

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 41.9 bits (99), Expect = 4e-05
 Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 21 VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
           LG+G  G+V+K +     ++VA+K   V  +  L E I ++ IL Q +   +VK  G  
Sbjct: 10 KLGEGSYGSVYKAIHKETGQVVAIKVVPV--EEDLQEIIKEISILKQCDSPYIVKYYGSY 67

Query: 80 LETEVPLLVYEYIPNGNLSD 99
           +     +V EY   G++SD
Sbjct: 68 FKNTDLWIVMEYCGAGSVSD 87

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173658 cd05114, PTKc_Tec_Rlk, Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

 Score = 41.8 bits (98), Expect = 5e-05
 Identities = 26/93 (27%), Positives = 51/93 (54%), Gaps = 5/93 (5%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKL--DEFINKVVILSQINYRNVVKLLGCC 79
           LG G  G VH G    +  VA+K    + +G +  ++FI +  ++ ++++  +V+L G C
Sbjct: 12  LGSGQFGVVHLGKWRAQIKVAIKA---INEGAMSEEDFIEEAKVMMKLSHPKLVQLYGVC 68

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
            + +   +V E++ NG L +YL ++     KD+
Sbjct: 69  TQQKPLYIVTEFMENGCLLNYLRQRQGKLSKDM 101

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. Instead of PH, Rlk contains an N-terminal cysteine-rich region. In addition to PH, Tec also contains the Tec homology (TH) domain with proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells. Tec is more widely-expressed than other Tec subfamily kinases. It is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Rlk is expressed in T-cells and mast cell lines. Tec and Rlk are both key components of T-cell receptor (TCR) signaling. They are important in TCR-stimulated proliferation, IL-2 production and phopholipase C-gamma1 activation. Length = 256

>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 21/80 (26%), Positives = 39/80 (48%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V +G+  +   VA+K  K     K  +F  +V  L ++ +++++ L   C  
Sbjct: 14  LGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSV 73

Query: 82  TEVPLLVYEYIPNGNLSDYL 101
            E   ++ E +  G+L  +L
Sbjct: 74  GEPVYIITELMEKGSLLAFL 93

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Srm and Brk however, lack the N-terminal myristylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Brk has been found to be overexpressed in a majority of breast tumors. Length = 261

>gnl|CDD|133209 cd05078, PTK_Jak2_Jak3_rpt1, Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 31/144 (21%), Positives = 56/144 (38%), Gaps = 31/144 (21%)

Query: 22  LGQGGQGTVHKGMLAD--------ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
           LGQG    + KG+  +        +  V +K      +   + F     ++SQ++++++V
Sbjct: 3   LGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLV 62

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNK 133
              G C+  +  ++V EY+  G+L  YL                        K K   N 
Sbjct: 63  LNYGVCVCGDESIMVQEYVKFGSLDTYLK-----------------------KNKNLINI 99

Query: 134 IWKQQLLKGLAPKRKKFEEEKWRH 157
            WK ++ K LA      E++   H
Sbjct: 100 SWKLEVAKQLAWALHFLEDKGLTH 123

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers and activators of transcription (STATs). Jak2 is widely expressed in many tissues while Jak3 is expressed only in hematopoietic cells. Jak2 is essential for the signaling of hormone-like cytokines such as growth hormone, erythropoietin, thrombopoietin, and prolactin, as well as some IFNs and cytokines that signal through the IL-3 and gp130 receptors. Jak3 binds the shared receptor subunit common gamma chain and thus, is essential in the signaling of cytokines that use it such as IL-2, IL-4, IL-7, IL-9, IL-15, and IL-21. Disruption of Jak2 in mice results in an embryonic lethal phenotype with multiple defects including erythropoietic and cardiac abnormalities. It is the only Jak gene that results in a lethal phenotype when disrupted in mice. A mutation in the pseudokinase domain of Jak2, V617F, is present in many myeloproliferative diseases, including almost all patients with polycythemia vera, and 50% of patients with essential thrombocytosis and myelofibrosis. Jak3 is important in lymphoid development and myeloid cell differentiation. Inactivating mutations in Jak3 have been reported in humans with severe combined immunodeficiency (SCID). Length = 258

>gnl|CDD|133174 cd05042, PTKc_Aatyk, Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 1/80 (1%)

Query: 27  QGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL 86
            G  H+GM     +V   ++      +   F+ +V    ++N+ NV++ LG C+E+   L
Sbjct: 13  LGEAHRGMSKARVVVKELRASATPDEQ-LLFLQEVQPYRELNHPNVLQCLGQCIESIPYL 71

Query: 87  LVYEYIPNGNLSDYLHEQNE 106
           LV E+ P G+L +YL     
Sbjct: 72  LVLEFCPLGDLKNYLRSNRG 91

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kinases based on overall sequence similarity and the phylogenetic tree. However, analysis of catalytic residues suggests that Aatyk proteins may be multispecific kinases, functioning also as serine/threonine kinases. They are involved in neural differentiation, nerve growth factor (NGF) signaling, apoptosis, and spermatogenesis. Length = 269

>gnl|CDD|133213 cd05082, PTKc_Csk, Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 4/82 (4%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
            +G+G  G V   ML D R   V    +        F+ +  +++Q+ + N+V+LLG  +
Sbjct: 13  TIGKGEFGDV---MLGDYRGNKVAVKCIKNDATAQAFLAEASVMTQLRHSNLVQLLGVIV 69

Query: 81  ETEVPL-LVYEYIPNGNLSDYL 101
           E +  L +V EY+  G+L DYL
Sbjct: 70  EEKGGLYIVTEYMAKGSLVDYL 91

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. Csk is expressed in a wide variety of tissues. As a negative regulator of Src, Csk plays a role in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, Csk also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. Length = 256

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 3/90 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLG 77
            +G+G  G V+     +D ++  +K+  +    + + ++ +N+V IL ++N+ N++K   
Sbjct: 7   QIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYE 66

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
              E     +V EY   G+LS  + +Q ++
Sbjct: 67  SFEEKGKLCIVMEYADGGDLSQKIKKQKKE 96

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|133193 cd05062, PTKc_IGF-1R, Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 7/87 (8%)

Query: 22  LGQGGQGTVH----KGMLADE---RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVK 74
           LGQG  G V+    KG++ DE   R+     ++     +  EF+N+  ++ + N  +VV+
Sbjct: 14  LGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVR 73

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYL 101
           LLG   + +  L++ E +  G+L  YL
Sbjct: 74  LLGVVSQGQPTLVIMELMTRGDLKSYL 100

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, where it is frequently overexpressed, IGF-1R is implicated in proliferation, the suppression of apoptosis, invasion, and metastasis. IGF-1R is being developed as a therapeutic target in cancer treatment. Length = 277

>gnl|CDD|173764 cd08224, STKc_Nek6_Nek7, Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 4/81 (4%)

Query: 22 LGQGGQGTVHKGM-LADERIVAVKKSKV---VGKGKLDEFINKVVILSQINYRNVVKLLG 77
          +G+G    V+K + L D R+VA+KK ++   +      + + ++ +L Q+++ NV+K L 
Sbjct: 10 IGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLA 69

Query: 78 CCLETEVPLLVYEYIPNGNLS 98
            +E     +V E    G+LS
Sbjct: 70 SFIENNELNIVLELADAGDLS 90

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may also be regulators of the p70 ribosomal S6 kinase. Length = 267

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 39.9 bits (94), Expect = 2e-04
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADE-RIVAVKKSKVVGKGKLDEFI-NKVVILSQINYRN 71
             L    VLGQG  G V+K       +I A+KK  V G  +  + +  ++  L       
Sbjct: 1   SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPY 60

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           VVK  G   +     +V EY+  G+L+D L
Sbjct: 61  VVKCYGAFYKEGEISIVLEYMDGGSLADLL 90

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 37/131 (28%), Positives = 52/131 (39%), Gaps = 31/131 (23%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK------SKVVGKGKLDEFINKVVILSQINYRNVV 73
           V+G+G  G V K    A   IVA+KK       + V K  L E    V +L Q+ + N+V
Sbjct: 8   VVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALRE----VKVLRQLRHENIV 63

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNK 133
            L           LV+EY+    L + L                  GG+P    +     
Sbjct: 64  NLKEAFRRKGRLYLVFEYVER-TLLELLEAS--------------PGGLPPDAVRS---Y 105

Query: 134 IWKQQLLKGLA 144
           IW  QLL+ +A
Sbjct: 106 IW--QLLQAIA 114

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|173650 cd05094, PTKc_TrkC, Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 24/91 (26%), Positives = 45/91 (49%), Gaps = 9/91 (9%)

Query: 26  GQGTVHKGMLA---------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           G+G   K  LA         D+ +VAVK  K        +F  +  +L+ + + ++VK  
Sbjct: 14  GEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFY 73

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
           G C + +  ++V+EY+ +G+L+ +L     D
Sbjct: 74  GVCGDGDPLIMVFEYMKHGDLNKFLRAHGPD 104

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some non-neural tissues including the developing heart. NT3/TrkC signaling plays an important role in the innervation of the cardiac conducting system and the development of smooth muscle cells. Mice deficient with NT3 and TrkC have multiple heart defects. NT3/TrkC signaling is also critical for the development and maintenance of enteric neurons that are important for the control of gut peristalsis. Length = 291

>gnl|CDD|132987 cd06656, STKc_PAK3, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +GQG  GTV+  + +A  + VA+K+  +  + K +  IN+++++ +    N+V  L   L
Sbjct: 27  IGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 86

Query: 81  ETEVPLLVYEYIPNGNLSDYLHEQNED 107
             +   +V EY+  G+L+D + E   D
Sbjct: 87  VGDELWVVMEYLAGGSLTDVVTETCMD 113

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK3 is highly expressed in the brain. It is implicated in neuronal plasticity, synapse formation, dendritic spine morphogenesis, cell cycle progression, neuronal migration, and apoptosis. Inactivating mutations in the PAK3 gene cause X-linked non-syndromic mental retardation, the severity of which depends on the site of the mutation. Length = 297

>gnl|CDD|132985 cd06654, STKc_PAK1, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

 Score = 39.7 bits (92), Expect = 3e-04
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +GQG  GTV+  M +A  + VA+++  +  + K +  IN+++++ +    N+V  L   L
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87

Query: 81  ETEVPLLVYEYIPNGNLSDYLHEQNED 107
             +   +V EY+  G+L+D + E   D
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTETCMD 114

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK1 is important in the regulation of many cellular processes including cytoskeletal dynamics, cell motility, growth, and proliferation. Although PAK1 has been regarded mainly as a cytosolic protein, recent reports indicate that PAK1 also exists in significant amounts in the nucleus, where it is involved in transcription modulation and in cell cycle regulatory events. PAK1 is also involved in transformation and tumorigenesis. Its overexpression, hyperactivation and increased nuclear accumulation is correlated to breast cancer invasiveness and progression. Nuclear accumulation is also linked to tamoxifen resistance in breast cancer cells. Length = 296

>gnl|CDD|173634 cd05053, PTKc_FGFR, Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

 Score = 39.7 bits (93), Expect = 3e-04
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 8/96 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
           D L +   LG+G  G V K              VAVK  K     K L + ++++ ++  
Sbjct: 12  DRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKM 71

Query: 67  I-NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           I  ++N++ LLG C +     +V EY  +GNL D+L
Sbjct: 72  IGKHKNIINLLGVCTQEGPLYVVVEYAAHGNLRDFL 107

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation, and intracellular signaling. There are at least 23 FGFs and four types of FGFRs. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to more that one type of receptor. FGF/FGFR signaling is important in the regulation of embryonic development, homeostasis, and regenerative processes. Depending on the cell type and stage, FGFR signaling produces diverse cellular responses including proliferation, growth arrest, differentiation, and apoptosis. Aberrant signaling leads to many human diseases such as skeletal, olfactory, and metabolic disorders, as well as cancer. Length = 293

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 12/91 (13%)

Query: 22  LGQGGQGTV----HKGMLADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVK 74
           LG+G  G V     K      ++ A+K   K K++ + +++  + +  ILS+IN+  +VK
Sbjct: 1   LGKGSFGKVLLVRKK---DTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVK 57

Query: 75  LLGCCLETEVPL-LVYEYIPNGNLSDYLHEQ 104
           L     +TE  L LV EY P G L  +L ++
Sbjct: 58  LH-YAFQTEEKLYLVLEYAPGGELFSHLSKE 87

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 22  LGQGGQGTVHKG-MLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +G G  G V+K   +A   +VA+K  K+      +    ++ +L +  + N+V   G  L
Sbjct: 11  IGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYL 70

Query: 81  ETEVPLLVYEYIPNGNLSDYLHE 103
             +   +V EY   G+L D    
Sbjct: 71  RRDKLWIVMEYCGGGSLQDIYQV 93

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|133199 cd05068, PTKc_Frk_like, Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V +G+  +   VAVK  K  G     +F+ +  I+ ++ +  +++L   C  
Sbjct: 14  LGAGQFGEVWEGLWNNTTPVAVKTLKP-GTMDPKDFLAEAQIMKKLRHPKLIQLYAVCTL 72

Query: 82  TEVPLLVYEYIPNGNLSDYLH 102
            E   +V E +  G+L +YL 
Sbjct: 73  EEPIYIVTELMKYGSLLEYLQ 93

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Frk, also known as Rak, is specifically expressed in liver, lung, kidney, intestine, mammary glands, and the islets of Langerhans. Rodent homologs were previously referred to as GTK (gastrointestinal tyr kinase), BSK (beta-cell Src-like kinase), or IYK (intestinal tyr kinase). Studies in mice reveal that Frk is not essential for viability. It plays a role in the signaling that leads to cytokine-induced beta-cell death in Type I diabetes. It also regulates beta-cell number during embryogenesis and early in life. Length = 261

>gnl|CDD|133172 cd05040, PTKc_Ack_like, Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 8/94 (8%)

Query: 22  LGQGGQGTVHKG---MLADERI-VAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKL 75
           LG G  G V +G       + I VAVK  KS  +    +D+F+ +  I+  +++ N+++L
Sbjct: 3   LGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSD-IMDDFLKEAAIMHSLDHENLIRL 61

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
            G  L T   ++V E  P G+L D L +      
Sbjct: 62  YGVVL-THPLMMVTELAPLGSLLDRLRKDALGHF 94

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with androgen-independent prostate cancer progression. Tnk1 regulates TNFalpha signaling and may play an important role in cell death. Length = 257

>gnl|CDD|133192 cd05061, PTKc_InsR, Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 7/103 (6%)

Query: 12  ATDHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKK-SKVVGKGKLDEFINKVVIL 64
           + + + +   LGQG  G V++G   D      E  VAVK  ++     +  EF+N+  ++
Sbjct: 4   SREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVM 63

Query: 65  SQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
                 +VV+LLG   + +  L+V E + +G+L  YL     +
Sbjct: 64  KGFTCHHVVRLLGVVSKGQPTLVVMELMAHGDLKSYLRSLRPE 106

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein metabolism, ion and amino acid transport, cell cycle and proliferation, cell differentiation, gene transcription, and nitric oxide synthesis. Insulin resistance, caused by abnormalities in InsR signaling, has been described in diabetes, hypertension, cardiovascular disease, metabolic syndrome, heart failure, and female infertility. Length = 288

>gnl|CDD|132986 cd06655, STKc_PAK2, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

 Score = 39.3 bits (91), Expect = 4e-04
 Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 1/87 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +GQG  GTV   + +A  + VA+K+  +  + K +  IN+++++ ++   N+V  L   L
Sbjct: 27  IGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFL 86

Query: 81  ETEVPLLVYEYIPNGNLSDYLHEQNED 107
             +   +V EY+  G+L+D + E   D
Sbjct: 87  VGDELFVVMEYLAGGSLTDVVTETCMD 113

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). PAK2 plays a role in pro-apoptotic signaling. It is cleaved and activated by caspases leading to morphological changes during apoptosis. PAK2 is also activated in response to a variety of stresses including DNA damage, hyperosmolarity, serum starvation, and contact inhibition, and may play a role in coordinating the stress response. PAK2 also contributes to cancer cell invasion through a mechanism distinct from that of PAK1. Length = 296

>gnl|CDD|133221 cd05090, PTKc_Ror1, Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

 Score = 39.2 bits (91), Expect = 4e-04
 Identities = 22/86 (25%), Positives = 48/86 (55%), Gaps = 6/86 (6%)

Query: 22  LGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKL 75
           LG+   G ++KG L        ++VA+K  K +   +   EF  +  +++++++ N+V L
Sbjct: 13  LGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCL 72

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYL 101
           LG   + +   +++EY+  G+L ++L
Sbjct: 73  LGVVTQEQPVCMLFEYLNQGDLHEFL 98

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. Ror kinases are expressed in many tissues during development. Avian Ror1 was found to be involved in late limb development. Studies in mice reveal that Ror1 is important in the regulation of neurite growth in central neurons, as well as in respiratory development. Loss of Ror1 also enhances the heart and skeletal abnormalities found in Ror2-deficient mice. Length = 283

>gnl|CDD|173638 cd05065, PTKc_EphR_B, Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

 Score = 39.1 bits (91), Expect = 5e-04
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 5/93 (5%)

Query: 21  VLGQGGQGTVHKGMLA----DERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKL 75
           V+G G  G V +G L      E  VA+K  K    + +  +F+++  I+ Q ++ N++ L
Sbjct: 11  VIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHL 70

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            G   ++   +++ E++ NG L  +L + +  F
Sbjct: 71  EGVVTKSRPVMIITEFMENGALDSFLRQNDGQF 103

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion. EphBRs play important roles in synapse formation and plasticity, spine morphogenesis, axon guidance, and angiogenesis. In the intestinal epithelium, EphBRs are Wnt signaling target genes that control cell compartmentalization. They function as suppressors of color cancer progression. Length = 269

>gnl|CDD|133186 cd05055, PTKc_PDGFR, Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

 Score = 39.0 bits (91), Expect = 5e-04
 Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 12/106 (11%)

Query: 14  DHLNVNIVLGQGGQGTVHKGM---LADERI---VAVKKSKVVGKGKLDE---FINKVVIL 64
           ++L+    LG G  G V +     L+       VAVK  K        E    ++++ I+
Sbjct: 35  NNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLK--PTAHSSEREALMSELKIM 92

Query: 65  SQI-NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
           S + N+ N+V LLG C      L++ EY   G+L ++L  + E F+
Sbjct: 93  SHLGNHENIVNLLGACTIGGPILVITEYCCYGDLLNFLRRKRESFL 138

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR subfamily receptors are important in the development of a variety of cells. PDGFRs are expressed in a many cells including fibroblasts, neurons, endometrial cells, mammary epithelial cells, and vascular smooth muscle cells. PDGFR signaling is critical in normal embryonic development, angiogenesis, and wound healing. PDGFRs transduce mitogenic signals for connective tissue cells and are important for cell shape and motility. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem cells, the interstitial cells of Cajal, and the pacemaker cells of the GI tract. CSF-1R signaling is critical in the regulation of macrophages and osteoclasts. Mammalian FLT3 plays an important role in the survival, proliferation, and differentiation of stem cells. Length = 302

>gnl|CDD|133247 cd05116, PTKc_Syk, Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

 Score = 38.8 bits (90), Expect = 5e-04
 Identities = 30/96 (31%), Positives = 48/96 (50%), Gaps = 6/96 (6%)

Query: 22  LGQGGQGTVHKG---MLADERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           LG G  GTV KG   M   E+ VAVK  K+        DE + +  ++ Q++   +V+++
Sbjct: 3   LGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMI 62

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           G C E E  +LV E    G L+ +L +      K++
Sbjct: 63  GIC-EAESWMLVMELAELGPLNKFLQKNKHVTEKNI 97

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, migration, and phagocytosis. More recently, Syk expression has been detected in other cell types (including epithelial cells, vascular endothelial cells, neurons, hepatocytes, and melanocytes), suggesting a variety of biological functions in non-immune cells. Syk plays a critical role in maintaining vascular integrity and in wound healing during embryogenesis. It also regulates Vav3, which is important in osteoclast function including bone development. In breast epithelial cells, where Syk acts as a negative regulator for epidermal growth factor receptor (EGFR) signaling, loss of Syk expression is associated with abnormal proliferation during cancer development suggesting a potential role as a tumor suppressor. In mice, Syk has been shown to inhibit malignant transformation of mammary epithelial cells induced with murine mammary tumor virus (MMTV). Length = 257

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 30/95 (31%), Positives = 51/95 (53%), Gaps = 20/95 (21%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDE------FINKVVILSQI---NYRN 71
           +G+G  GTV+K   L   R VA+KK +V     L E       + ++ +L Q+    + N
Sbjct: 7   IGEGAYGTVYKARDLNTGRFVALKKVRV----PLSEEGIPLSTLREIALLKQLESFEHPN 62

Query: 72  VVKLLGCC----LETEVPL-LVYEYIPNGNLSDYL 101
           +V+LL  C     + E+ L LV+E++ + +L+ YL
Sbjct: 63  IVRLLDVCHGPRTDRELKLTLVFEHV-DQDLATYL 96

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 38.7 bits (91), Expect = 6e-04
 Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 28/130 (21%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVI-----LSQINYRNVVKL 75
           LG+G    V+K       RIVA+KK K+  + +  + IN   +     L ++ + N++ L
Sbjct: 8   LGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGL 67

Query: 76  LGCCLETEVPLLVYEYIPNGNLS-DYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKI 134
           L           V+ +  N NL  +++    E  +KD   +L+               K 
Sbjct: 68  LD----------VFGHKSNINLVFEFMETDLEKVIKDKSIVLT-----------PADIKS 106

Query: 135 WKQQLLKGLA 144
           +    L+GL 
Sbjct: 107 YMLMTLRGLE 116

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 32/132 (24%), Positives = 65/132 (49%), Gaps = 33/132 (25%)

Query: 22  LGQGGQGTVHK-GMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVK---- 74
           LG+G  G+V+K   L+D +  A+K+  +  + + + ++ +N++ IL+ +N+ N++     
Sbjct: 8   LGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEA 67

Query: 75  -LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNK 133
            L G  L      +V EY P G+LS  + ++                   + ++   + +
Sbjct: 68  FLDGNKL-----CIVMEYAPFGDLSKAISKRK------------------KKRKLIPEQE 104

Query: 134 IWKQ--QLLKGL 143
           IW+   QLL+GL
Sbjct: 105 IWRIFIQLLRGL 116

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|133219 cd05088, PTKc_Tie2, Catalytic domain of the Protein Tyrosine Kinase, Tie2

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 5/88 (5%)

Query: 21  VLGQGGQGTVHKGMLADERI---VAVKKSK-VVGKGKLDEFINKVVILSQIN-YRNVVKL 75
           V+G+G  G V K  +  + +    A+K+ K    K    +F  ++ +L ++  + N++ L
Sbjct: 14  VIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINL 73

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           LG C       L  EY P+GNL D+L +
Sbjct: 74  LGACEHRGYLYLAIEYAPHGNLLDFLRK 101

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of Ang-1 to Tie2 leads to receptor autophosphorylation and activation, promoting cell migration and survival. In contrast, Ang-2 binding to Tie2 does not result in the same response, suggesting that Ang-2 may function as an antagonist. Tie2 signaling plays key regulatory roles in vascular integrity and quiescence, and in inflammation. Length = 303

>gnl|CDD|133240 cd05109, PTKc_HER2, Catalytic domain of the Protein Tyrosine Kinase, HER2

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 30/92 (32%), Positives = 50/92 (54%), Gaps = 7/92 (7%)

Query: 21  VLGQGGQGTVHKGMLADE----RI-VAVKKSKVVGKGKLD-EFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   +    +I VA+K  +     K + E +++  +++ +    V +
Sbjct: 14  VLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCR 73

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           LLG CL + V  LV + +P G L DY+ E  +
Sbjct: 74  LLGICLTSTVQ-LVTQLMPYGCLLDYVRENKD 104

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER2 does not bind to any known EGFR subfamily ligands, but contributes to the kinase activity of all possible heterodimers. It acts as the preferred partner with other ligand-bound EGFR proteins and functions as a signal amplifier, with the HER2-HER3 heterodimer being the most potent pair in mitogenic signaling. HER2 plays an important role in cell development, proliferation, survival and motility. Overexpression of HER2 results in its activation and downstream signaling, even in the absence of ligand. HER2 overexpression, mainly due to gene amplification, has been shown in a variety of human cancers. Its role in breast cancer is especially well-documented. HER2 is up-regulated in about 25% of breast tumors and is associated with increases in tumor aggressiveness, recurrence and mortality. HER2 is a target for monoclonal antibodies and small molecule inhibitors, which are being developed as treatments for cancer. The first humanized antibody approved for clinical use is Trastuzumab (Herceptin), which is being used in combination with other therapies to improve the survival rates of patients with HER2-overexpressing breast cancer. Length = 279

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 38.2 bits (90), Expect = 0.001
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 10/93 (10%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINK-----VVILSQINYRNVVKL 75
           LG+G  G V+K        IVA+KK ++      +E I       + +L ++ + N+VKL
Sbjct: 7   LGEGTYGVVYKARDKKTGEIVALKKIRL---DNEEEGIPSTALREISLLKELKHPNIVKL 63

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           L          LV+EY    +L  YL ++    
Sbjct: 64  LDVIHTERKLYLVFEYCDM-DLKKYLDKRPGPL 95

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|132979 cd06648, STKc_PAK_II, Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 7/82 (8%)

Query: 22  LGQGGQGTVHKGMLADE----RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
           +G+G  G V    +A +    R VAVKK  +  + + +   N+VVI+    + N+V++  
Sbjct: 27  IGEGSTGIV---CIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYS 83

Query: 78  CCLETEVPLLVYEYIPNGNLSD 99
             L  +   +V E++  G L+D
Sbjct: 84  SYLVGDELWVVMEFLEGGALTD 105

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs found in group I PAKs, such as an AID (autoinhibitory domain) and SH3 binding sites. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. While group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX, no such binding has been demonstrated for group II PAKs. Some known substrates of group II PAKs are also substrates of group I PAKs such as Raf, BAD, LIMK and GEFH1. Unique group II substrates include MARK/Par-1 and PDZ-RhoGEF. Group II PAKs play important roles in filopodia formation, neuron extension, cytoskeletal organization, and cell survival. Length = 285

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 37.7 bits (88), Expect = 0.001
 Identities = 22/90 (24%), Positives = 42/90 (46%), Gaps = 4/90 (4%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVV-GKGKLDEFI-NKVVILSQINYRNVVKLLGC 78
           +G G  G V+  + L    ++AVK+ ++     K  + I +++ +L  + + N+VK  G 
Sbjct: 8   IGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGV 67

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHE-QNED 107
            +  E   +  EY   G L + L   +  D
Sbjct: 68  EVHREKVYIFMEYCSGGTLEELLEHGRILD 97

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173656 cd05111, PTK_HER3, Pseudokinase domain of the Protein Tyrosine Kinase, HER3

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 31/109 (28%), Positives = 52/109 (47%), Gaps = 14/109 (12%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADE----RI-VAVKK-SKVVGKGKLD 55
           +I    EL K         +LG G  GTVHKG+   E    +I VA+K      G+    
Sbjct: 2   RILKETELRKLK-------LLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQ 54

Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ 104
           E  + ++ +  +++  +V+LLG C    +  LV +  P G+L D++ + 
Sbjct: 55  EITDHMLAMGSLDHAYIVRLLGICPGASLQ-LVTQLSPLGSLLDHVRQH 102

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as binding sites for downstream signaling molecules. HER3 binds the neuregulin ligands, NRG1 and NRG2. HER3 contains an impaired tyr kinase domain and relies on its heterodimerization partners for activity following ligand binding. The HER2-HER3 heterodimer constitutes a high affinity co-receptor capable of potent mitogenic signaling. HER3 participates in a signaling pathway involved in the proliferation, survival, adhesion, and motility of tumor cells. Length = 279

>gnl|CDD|133195 cd05064, PTKc_EphR_A10, Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 29/103 (28%), Positives = 48/103 (46%), Gaps = 9/103 (8%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVGKGKLDE-FINKVV 62
           ELD  +  + +  +LG G  G + +G L      E  VA+   +     K    F+ + +
Sbjct: 1   ELDNKS--IKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEAL 58

Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL--HE 103
            L Q ++ N+V+L G        ++V EY+ NG L  +L  HE
Sbjct: 59  TLGQFDHSNIVRLEGVITRGNTMMIVTEYMSNGALDSFLRKHE 101

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). EphA10, which contains an inactive tyr kinase domain, may function to attenuate signals of co-clustered active receptors. EphA10 is mainly expressed in the testis. Ephrin/EphR interaction results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. Length = 266

>gnl|CDD|173639 cd05066, PTKc_EphR_A, Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

 Score = 37.2 bits (86), Expect = 0.002
 Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 7/94 (7%)

Query: 21  VLGQGGQGTVHKGMLA----DERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVK 74
           V+G G  G V  G L      E  VA+K  K     K + D F+++  I+ Q ++ N++ 
Sbjct: 11  VIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRD-FLSEASIMGQFDHPNIIH 69

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           L G   +++  ++V EY+ NG+L  +L + +  F
Sbjct: 70  LEGVVTKSKPVMIVTEYMENGSLDAFLRKHDGQF 103

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored to the plasma membrane. The resulting downstream signals occur bidirectionally in both EphR-expressing cells (forward signaling) and ephrin-expressing cells (reverse signaling). Ephrin/EphR interaction mainly results in cell-cell repulsion or adhesion, making it important in neural development and plasticity, cell morphogenesis, cell-fate determination, embryonic development, tissue patterning, and angiogenesis. EphARs and ephrin-A ligands are expressed in multiple areas of the developing brain, especially in the retina and tectum. They are part of a system controlling retinotectal mapping. Length = 267

>gnl|CDD|133205 cd05074, PTKc_Tyro3, Catalytic domain of the Protein Tyrosine Kinase, Tyro3

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 12/93 (12%)

Query: 21  VLGQGGQGTVHKGMLADE----RIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVK 74
           +LG+G  G+V +  L  E    + VAVK  K+ +     ++EF+ +   + + ++ NV+K
Sbjct: 6   MLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIK 65

Query: 75  LLGCCLETE------VPLLVYEYIPNGNLSDYL 101
           L+G  L +       +P+++  ++ +G+L  +L
Sbjct: 66  LIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFL 98

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic factor. It is also expressed in osteoclasts and has a role in bone resorption. Length = 273

>gnl|CDD|133238 cd05107, PTKc_PDGFR_beta, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 41  VAVKKSKVVGK-GKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPNGNLS 98
           VAVK  K   +  +    ++++ I+S +  + N+V LLG C +     ++ EY   G+L 
Sbjct: 70  VAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACTKGGPIYIITEYCRYGDLV 129

Query: 99  DYLHEQNEDFVK 110
           DYLH     F++
Sbjct: 130 DYLHRNKHTFLQ 141

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-DD induce PDGFR beta homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR beta signaling leads to a variety of cellular effects including the stimulation of cell growth and chemotaxis, as well as the inhibition of apoptosis and GAP junctional communication. It is critical in normal angiogenesis as it is involved in the recruitment of pericytes and smooth muscle cells essential for vessel stability. Aberrant PDGFR beta expression is associated with some human cancers. The continuously-active fusion proteins of PDGFR beta with COL1A1 and TEL are associated with dermatofibrosarcoma protuberans (DFSP) and a subset of chronic myelomonocytic leukemia (CMML), respectively. Length = 401

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 36.9 bits (85), Expect = 0.002
 Identities = 33/120 (27%), Positives = 62/120 (51%), Gaps = 11/120 (9%)

Query: 15  HLNVNIVLGQGGQGTVHKGMLADERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNV 72
            L +  ++G+G  G V +G    ++ VAVK  K  V  +  L+E      ++++++++N+
Sbjct: 7   KLTLGEIIGEGEFGAVLQGEYTGQK-VAVKNIKCDVTAQAFLEE----TAVMTKLHHKNL 61

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV---KDVGFILSRRGGIPRLKRKK 129
           V+LLG  L   +  +V E +  GNL ++L  +    V   + + F L    G+  L+ KK
Sbjct: 62  VRLLGVILHNGL-YIVMELMSKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKK 120

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

>gnl|CDD|173760 cd08220, STKc_Nek8, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 24/87 (27%), Positives = 48/87 (55%), Gaps = 3/87 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEF--INKVVILSQINYRNVVKLLG 77
           V+G+G  G VH     AD+++V +K+  V    K +     N+  +L  +++ N+++   
Sbjct: 7   VVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYE 66

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQ 104
             LE +  ++V EY P G L++Y+ ++
Sbjct: 67  NFLEDKALMIVMEYAPGGTLAEYIQKR 93

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with a rare form of juvenile renal cystic disease, nephronophthisis type 9. It has been suggested that a defect in the ciliary localization of Nek8 contributes to the development of cysts manifested by these diseases. Length = 256

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 25/89 (28%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVV-----GKGKLDEFINKVVILSQINYRNVVKL 75
           LG G  G+V++G+ L D    AVK+  +      G+  + +   ++ +LS++ + N+V+ 
Sbjct: 8   LGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQY 67

Query: 76  LGCCLETEVPLLVY-EYIPNGNLSDYLHE 103
           LG   E +  L ++ E +P G+L+  L +
Sbjct: 68  LGTEREED-NLYIFLELVPGGSLAKLLKK 95

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 10/88 (11%)

Query: 21  VLGQGGQGTVHKGMLADER----IVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVV 73
            LG G  G V   ML   +      A+K   K+K+V   +++  +N+  IL  I +  +V
Sbjct: 8   TLGTGSFGRV---MLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLV 64

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            L G   +     LV EY+P G L  +L
Sbjct: 65  NLYGSFQDDSNLYLVMEYVPGGELFSHL 92

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|173653 cd05105, PTKc_PDGFR_alpha, Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

 Score = 36.5 bits (84), Expect = 0.004
 Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 8/103 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGM---LADER---IVAVKKSKVVGKGKLDE-FINKVVILSQ 66
           D L +  +LG G  G V +G    L+  +    VAVK  K   +    +  ++++ I++ 
Sbjct: 37  DGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTH 96

Query: 67  IN-YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +  + N+V LLG C ++    ++ EY   G+L +YLH+  ++F
Sbjct: 97  LGPHLNIVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNF 139

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-AB, and PDGF-CC induce PDGFR alpha homodimerization. PDGFR signaling plays many roles in normal embryonic development and adult physiology. PDGFR alpha signaling is important in the formation of lung alveoli, intestinal villi, mesenchymal dermis, and hair follicles, as well as in the development of oligodendrocytes, retinal astrocytes, neural crest cells, and testicular cells. Aberrant PDGFR alpha expression is associated with some human cancers. Mutations in PDGFR alpha have been found within a subset of gastrointestinal stromal tumors (GISTs). An active fusion protein FIP1L1-PDGFR alpha, derived from interstitial deletion, is associated with idiopathic hypereosinophilic syndrome (HES) and chronic eosinophilic leukemia (CEL). Length = 400

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.97
KOG0595	429	consensus Serine/threonine-protein kinase involved	99.97
KOG0575	592	consensus Polo-like serine/threonine protein kinas	99.95
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	99.95
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	99.94
KOG0598	357	consensus Ribosomal protein S6 kinase and related	99.94
KOG0605	550	consensus NDR and related serine/threonine kinases	99.93
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	99.93
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	99.93
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	99.93
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	99.93
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	99.93
KOG0192	362	consensus Tyrosine kinase specific for activated (	99.92
KOG0581	364	consensus Mitogen-activated protein kinase kinase	99.92
KOG0611	668	consensus Predicted serine/threonine protein kinas	99.92
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	99.91
KOG0583	370	consensus Serine/threonine protein kinase [Signal	99.91
KOG0661	538	consensus MAPK related serine/threonine protein ki	99.91
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	99.91
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.91
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	99.9
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	99.9
KOG0198	313	consensus MEKK and related serine/threonine protei	99.9
KOG0589	426	consensus Serine/threonine protein kinase [General	99.9
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	99.9
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	99.9
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	99.89
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	99.89
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	99.89
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	99.89
KOG0694	694	consensus Serine/threonine protein kinase [Signal	99.89
KOG0610	459	consensus Putative serine/threonine protein kinase	99.89
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	99.89
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	99.89
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.89
PTZ00263	329	protein kinase A catalytic subunit; Provisional	99.89
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	99.89
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	99.89
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	99.88
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	99.88
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	99.88
KOG0582	516	consensus Ste20-like serine/threonine protein kina	99.88
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	99.88
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	99.88
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.88
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.88
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	99.88
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.88
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	99.88
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.88
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	99.87
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	99.87
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.87
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.87
KOG0578	550	consensus p21-activated serine/threonine protein k	99.87
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	99.87
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	99.87
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.87
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	99.87
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.87
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	99.87
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	99.87
KOG0586	596	consensus Serine/threonine protein kinase [General	99.87
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.87
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.87
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	99.87
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	99.87
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	99.86
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.86
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	99.86
PTZ00267	478	NIMA-related protein kinase; Provisional	99.86
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	99.86
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.86
PHA02988	283	hypothetical protein; Provisional	99.86
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	99.86
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.86
KOG4717	864	consensus Serine/threonine protein kinase [Signal	99.86
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.86
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.86
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.86
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	99.86
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.86
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	99.86
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.86
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	99.86
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.86
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	99.86
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.86
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	99.85
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.85
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	99.85
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.85
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	99.85
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.85
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	99.85
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.85
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	99.85
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	99.85
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	99.85
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	99.85
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	99.85
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.85
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.85
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.85
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	99.85
PLN00034	353	mitogen-activated protein kinase kinase; Provision	99.85
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.85
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.84
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.84
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.84
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	99.84
PHA03212	391	serine/threonine kinase US3; Provisional	99.84
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.84
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.84
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.84
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	99.84
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.84
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.84
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	99.84
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	99.84
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	99.84
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.84
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	99.84
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	99.84
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	99.84
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.84
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.84
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.83
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	99.83
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.83
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.83
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.83
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.83
PTZ00283	496	serine/threonine protein kinase; Provisional	99.83
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.83
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	99.83
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.83
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	99.83
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	99.83
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.83
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.83
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.83
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.83
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.83
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.83
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.83
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.83
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.83
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.83
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.83
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.82
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.82
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.82
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.82
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.82
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.82
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.82
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.82
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.82
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.82
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.82
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	99.82
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.82
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.82
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.82
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.82
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.82
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.82
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.82
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.82
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.82
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.82
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	99.82
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.82
KOG3653	534	consensus Transforming growth factor beta/activin	99.82
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.82
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.82
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.82
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.82
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.82
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.81
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	99.81
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.81
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.81
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.81
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.81
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.81
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.81
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.81
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.81
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.81
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.81
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.81
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.81
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.81
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.81
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.81
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.81
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.81
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.81
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.81
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.81
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.81
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.81
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.81
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.81
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	99.81
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.81
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.81
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.81
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.81
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.81
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.81
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.81
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.81
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.81
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.81
PTZ00036	440	glycogen synthase kinase; Provisional	99.81
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.81
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.81
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.8
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	99.8
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.8
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.8
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	99.8
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.8
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.8
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.8
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.8
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.8
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.8
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.8
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.8
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.8
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.8
KOG0690	516	consensus Serine/threonine protein kinase [Signal	99.8
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.8
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.8
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.8
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.8
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.8
PRK09188	365	serine/threonine protein kinase; Provisional	99.8
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.8
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.8
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.8
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.79
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.79
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.79
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.79
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.79
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.79
PHA03209	357	serine/threonine kinase US3; Provisional	99.79
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.79
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.79
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	99.79
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.79
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.79
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.79
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.79
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.79
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.79
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.79
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.79
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.79
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.79
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.79
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.79
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.79
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.79
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.79
KOG0201	467	consensus Serine/threonine protein kinase [Signal	99.79
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.79
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.79
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.79
PHA03211	461	serine/threonine kinase US3; Provisional	99.78
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.78
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.78
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	99.78
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.78
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.78
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.78
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.78
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.78
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.78
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.78
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.78
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.78
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.78
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.78
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.78
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.78
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.78
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.77
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.77
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.77
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	99.77
PHA03207	392	serine/threonine kinase US3; Provisional	99.77
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.77
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.77
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.77
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.77
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.77
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.77
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.77
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.77
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.77
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.77
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.77
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.77
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.77
PLN00009	294	cyclin-dependent kinase A; Provisional	99.77
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.77
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.76
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.76
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.76
KOG0584	632	consensus Serine/threonine protein kinase [General	99.76
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.76
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.76
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.76
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	99.76
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.76
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.76
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.76
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.76
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	99.76
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.76
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.75
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.75
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.75
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.75
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.75
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.75
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.75
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.75
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.75
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.75
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.75
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.75
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.75
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.74
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.74
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	99.74
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.74
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.74
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.74
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.74
PHA03210	501	serine/threonine kinase US3; Provisional	99.74
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.74
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.74
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.74
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.74
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.74
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.73
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.73
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.73
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.73
PTZ00284	467	protein kinase; Provisional	99.73
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.73
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.73
KOG1152	772	consensus Signal transduction serine/threonine kin	99.72
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.72
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.72
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.72
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.72
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.72
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.71
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.71
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.71
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.71
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.71
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.7
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.7
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.7
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.7
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.7
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.7
PRK10345	210	hypothetical protein; Provisional	99.7
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.7
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.7
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.7
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.7
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.69
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.69
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.69
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.69
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.68
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	99.67
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.66
PHA02882	294	putative serine/threonine kinase; Provisional	99.66
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.65
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.65
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.64
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	99.63
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.63
PRK14879	211	serine/threonine protein kinase; Provisional	99.62
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.61
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.61
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.6
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.59
PRK12274	218	serine/threonine protein kinase; Provisional	99.58
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	99.58
PRK09605	535	bifunctional UGMP family protein/serine/threonine	99.57
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.57
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.57
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	99.56
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.53
smart00090	237	RIO RIO-like kinase.	99.51
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.47
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	99.46
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.44
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.43
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.39
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	99.37
KOG1290	590	consensus Serine/threonine protein kinase [Signal	99.36
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	99.34
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	99.31
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.28
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.26
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	99.24
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	99.21
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	99.2
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	99.17
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	98.95
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.88
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.65
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.64
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	98.61
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	98.56
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	98.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.43
PLN00181	793	protein SPA1-RELATED; Provisional	98.37
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	98.32
KOG3087	229	consensus Serine/threonine protein kinase [General	98.3
KOG1243	690	consensus Protein kinase [General function predict	98.2
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	98.2
COG0661	517	AarF Predicted unusual protein kinase [General fun	98.16
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.12
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	98.12
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	98.12
KOG0590	601	consensus Checkpoint kinase and related serine/thr	98.11
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.78
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	97.77
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.69
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	97.66
COG0478	304	RIO-like serine/threonine protein kinase fused to	97.62
PF10707	199	YrbL-PhoP_reg: PhoP regulatory network protein Yrb	97.5
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.5
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	97.46
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	97.44
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	97.27
KOG0606	1205	consensus Microtubule-associated serine/threonine	97.17
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	97.15
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.06
PRK10593	297	hypothetical protein; Provisional	96.37
PLN02876	822	acyl-CoA dehydrogenase	96.25
PF01636	239	APH: Phosphotransferase enzyme family This family	96.18
PF13095	207	FTA2: Kinetochore Sim4 complex subunit FTA2	96.08
KOG1266	458	consensus Protein kinase [Signal transduction mech	96.07
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	95.97
PRK09902	216	hypothetical protein; Provisional	95.93
PF03109	119	ABC1: ABC1 family; InterPro: IPR004147 This entry	95.61
cd05150	244	APH Aminoglycoside 3'-phosphotransferase (APH). Th	95.45
TIGR02721	256	ycfN_thiK thiamine kinase. Members of this family	95.21
PRK09550	401	mtnK methylthioribose kinase; Reviewed	94.75
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	94.63
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	94.62
PRK05231	319	homoserine kinase; Provisional	94.13
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	92.46
PF03881	288	Fructosamin_kin: Fructosamine kinase; InterPro: IP	91.75
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	91.49
cd05157	235	ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes.	90.56
KOG0606	1205	consensus Microtubule-associated serine/threonine	88.18
KOG0584	632	consensus Serine/threonine protein kinase [General	87.21
KOG2268	465	consensus Serine/threonine protein kinase [Signal	87.1
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	86.48
cd05153	296	HomoserineK_II Homoserine Kinase, type II. Homoser	86.33
KOG0607	463	consensus MAP kinase-interacting kinase and relate	85.07
COG3173	321	Predicted aminoglycoside phosphotransferase [Gener	84.19
PLN02756	418	S-methyl-5-thioribose kinase	83.96
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	83.19
PF04655	253	APH_6_hur: Aminoglycoside/hydroxyurea antibiotic r	83.05
TIGR01767	370	MTRK 5-methylthioribose kinase. This enzyme is inv	81.61
KOG1236	565	consensus Predicted unusual protein kinase [Genera	80.97
PRK12396	409	5-methylribose kinase; Reviewed	80.44
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	80.06

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=1.9e-31  Score=194.49  Aligned_cols=153  Identities=39%  Similarity=0.560  Sum_probs=132.0

Q ss_pred             CccccHHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeee
Q 040049            1 VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL   80 (167)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~   80 (167)
                      ++.|+++++..+|++|.-...||+|+||.||+|...++..+|||.+.........+|.+|+.++.+++|||+++++|||.
T Consensus        62 ~~~fs~~el~~AT~~Fs~~~~ig~Ggfg~VYkG~l~~~~~vAVK~~~~~~~~~~~eF~~Ei~~ls~l~H~Nlv~LlGyC~  141 (361)
T KOG1187|consen   62 LRSFSYDELRKATNNFSESNLIGEGGFGTVYKGVLSDGTVVAVKRLSSNSGQGEREFLNEVEILSRLRHPNLVKLLGYCL  141 (361)
T ss_pred             cceeeHHHHHHHHhCCchhcceecCCCeEEEEEEECCCCEEEEEEecCCCCcchhHHHHHHHHHhcCCCcCcccEEEEEe
Confidence            36799999999999999999999999999999998888999999776543321355999999999999999999999999


Q ss_pred             cCCc-ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHH----HcCchh---------hhhcccchhHHHHhhhccCCcc
Q 040049           81 ETEV-PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSR----RGGIPR---------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        81 ~~~~-~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i----~~~l~~---------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      +.+. .++|+||+++|+|.+.+...... .++|..++.|    |.|++|         +|+|+|+.|||   ++.++.+|
T Consensus       142 e~~~~~~LVYEym~nGsL~d~L~~~~~~-~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNIL---LD~~~~aK  217 (361)
T KOG1187|consen  142 EGGEHRLLVYEYMPNGSLEDHLHGKKGE-PLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNIL---LDEDFNAK  217 (361)
T ss_pred             cCCceEEEEEEccCCCCHHHHhCCCCCC-CCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHee---ECCCCCEE
Confidence            9884 99999999999999999976543 5678766655    555656         57999999999   99999999


Q ss_pred             ccccchhhhhh
Q 040049          147 RKKFEEEKWRH  157 (167)
Q Consensus       147 l~df~~~~~~~  157 (167)
                      ++|||+|++.+
T Consensus       218 lsDFGLa~~~~  228 (361)
T KOG1187|consen  218 LSDFGLAKLGP  228 (361)
T ss_pred             ccCccCcccCC
Confidence            99999998654

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=2.5e-31  Score=189.18  Aligned_cols=145  Identities=21%  Similarity=0.318  Sum_probs=123.6

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ...+|...+.||.|+|++||+|+ ..++..||||.+...  ..+..+.+..|+.+++.++|||||.+++++.+++++|+|
T Consensus         8 ~~~~y~~~~~iG~GsfavVykg~h~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLkel~H~nIV~l~d~~~~~~~i~lV   87 (429)
T KOG0595|consen    8 VVGDYELSREIGSGSFAVVYKGRHKKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKELKHPNIVRLLDCIEDDDFIYLV   87 (429)
T ss_pred             ccccceehhhccCcceEEEEEeEeccCCceEEeeeehhhccCHHHHHHHHHHHHHHHhcCCcceeeEEEEEecCCeEEEE
Confidence            45789999999999999999999 457899999988665  455667789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc---CCccccccchhhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG---LAPKRKKFEEEKWR  156 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~---~~~~l~df~~~~~~  156 (167)
                      ||||.||||.++|+..+. ++........|++.|+++      +|||+||.||++..-...   ...||+|||+||..
T Consensus        88 MEyC~gGDLs~yi~~~~~l~e~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L  165 (429)
T KOG0595|consen   88 MEYCNGGDLSDYIRRRGRLPEATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFL  165 (429)
T ss_pred             EEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhC
Confidence            999999999999998854 555666678888888876      689999999994432122   67799999999954

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5e-28  Score=179.55  Aligned_cols=138  Identities=17%  Similarity=0.225  Sum_probs=124.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..|...+.||+|+|+.+|.++. .+|+.+|+|.+...   ++..++.+.+|+++.+.++||||++++++|++.+++|+|+
T Consensus        18 ~~Y~~g~~LGkGgFA~cYe~~~~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~L~HpnIV~f~~~FEDs~nVYivL   97 (592)
T KOG0575|consen   18 KRYKRGRFLGKGGFARCYEARDLDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRSLKHPNIVQFYHFFEDSNNVYIVL   97 (592)
T ss_pred             ceeeeeeeeccCcceEEEEEEEcCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHhcCCCcEEeeeeEeecCCceEEEE
Confidence            5699999999999999999995 78999999988653   5677889999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|+.++|..+++.+.. .++....+..||+.|+.|      +|||+|.+|+|   +..+..+||+|||+|-
T Consensus        98 ELC~~~sL~el~Krrk~ltEpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlf---L~~~~~VKIgDFGLAt  166 (592)
T KOG0575|consen   98 ELCHRGSLMELLKRRKPLTEPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLF---LNENMNVKIGDFGLAT  166 (592)
T ss_pred             EecCCccHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcCceecccchhhee---ecCcCcEEecccceee
Confidence            99999999999995543 556677778999999988      57999999999   8999999999999987

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=99.95  E-value=5.1e-28  Score=172.70  Aligned_cols=145  Identities=19%  Similarity=0.177  Sum_probs=119.1

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc-------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK-------GKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~-------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ..+.|.+.+.+|+|+||.|-.|. ..+|+.+|+|++.....       .......+|+++|+.++||||+++++++..++
T Consensus       170 ~~d~yii~~~LGsGafg~Vkla~e~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkkL~HP~IV~~~d~f~~~d  249 (475)
T KOG0615|consen  170 FNDYYIISKTLGSGAFGLVKLAYEKKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKKLSHPNIVRIKDFFEVPD  249 (475)
T ss_pred             hcceeEeeeeecCCceeEEEEEEEcccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHhcCCCCEEEEeeeeecCC
Confidence            34677888999999999999998 67899999998755321       12233579999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +.|||+||+.||+|.+.+..... ..........|++.++.|+      |||+||+||++.+=.....+||+|||+|+..
T Consensus       250 s~YmVlE~v~GGeLfd~vv~nk~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~  329 (475)
T KOG0615|consen  250 SSYMVLEYVEGGELFDKVVANKYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVS  329 (475)
T ss_pred             ceEEEEEEecCccHHHHHHhccccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhcc
Confidence            99999999999999999997654 3334456677888888875      7999999999543334588999999999954

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=99.94  E-value=4.8e-28  Score=167.30  Aligned_cols=138  Identities=19%  Similarity=0.150  Sum_probs=117.9

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      +.|+...++|+|++|+|++|+ ..+|+.||+|++..+.  +...+-.++|++++++++|+|++.++++|..+..+++|+|
T Consensus         2 ekYE~LgkvGEGSYGvV~KCrnk~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKqLkH~NLVnLiEVFrrkrklhLVFE   81 (396)
T KOG0593|consen    2 EKYEKLGKVGEGSYGVVMKCRNKDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQLKHENLVNLIEVFRRKRKLHLVFE   81 (396)
T ss_pred             cHHhhhhccccCcceEEEEeccCCcccEEEEEeeccCCccHHHHHHHHHHHHHHHhcccchHHHHHHHHHhcceeEEEee
Confidence            357888899999999999999 5689999999986543  3344568999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+. ++.+-+....  .+......++.|++.++.+      +|||+||+||+   +.++..+|+||||+|+.
T Consensus        82 ~~dh-TvL~eLe~~p~G~~~~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENIL---it~~gvvKLCDFGFAR~  150 (396)
T KOG0593|consen   82 YCDH-TVLHELERYPNGVPSELVKKYLYQLLKAIHFCHKNNCIHRDIKPENIL---ITQNGVVKLCDFGFART  150 (396)
T ss_pred             ecch-HHHHHHHhccCCCCHHHHHHHHHHHHHHhhhhhhcCeecccCChhheE---EecCCcEEeccchhhHh
Confidence            9987 5555555443  3667778889999999887      68999999999   89999999999999993

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=99.94  E-value=2.4e-26  Score=162.04  Aligned_cols=140  Identities=24%  Similarity=0.200  Sum_probs=123.8

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|++++.||+|+||+|+.++ ..+++.+|+|.++..   ..++.+....|..++..++||.|+.++-.|.+.+.+|+
T Consensus        23 ~~~dF~~lkviGkG~fGkV~~Vrk~dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~v~hPFiv~l~ysFQt~~kLyl  102 (357)
T KOG0598|consen   23 GPDDFEILKVIGKGSFGKVFQVRKKDTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSKIKHPFIVKLIYSFQTEEKLYL  102 (357)
T ss_pred             ChhheeeeeeeeccCCceEEEEEEcccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHhCCCCcEeeeEEecccCCeEEE
Confidence            46789999999999999999998 568999999987654   34567788999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+||+.||+|...+++.+. .......++-.|+.||.|+      |||+||+||+   ++.++.++|+|||+++
T Consensus       103 Vld~~~GGeLf~hL~~eg~F~E~~arfYlaEi~lAL~~LH~~gIiyRDlKPENIL---Ld~~GHi~LtDFgL~k  173 (357)
T KOG0598|consen  103 VLDYLNGGELFYHLQREGRFSEDRARFYLAEIVLALGYLHSKGIIYRDLKPENIL---LDEQGHIKLTDFGLCK  173 (357)
T ss_pred             EEeccCCccHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHhCCeeeccCCHHHee---ecCCCcEEEeccccch
Confidence            9999999999999997654 5555667788888888885      5899999999   9999999999999998

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=99.93  E-value=4.8e-26  Score=167.02  Aligned_cols=140  Identities=21%  Similarity=0.233  Sum_probs=118.5

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|+++..||+|+||.||.|. ..+|..+|+|+++.+.   .........|-.+|....+|++|+++-.|.+.+++||
T Consensus       139 ~~~DFe~Lk~IgkGAfGeVrLarKk~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~~ds~~vVKLyYsFQD~~~LYL  218 (550)
T KOG0605|consen  139 SLDDFELLKVIGKGAFGEVRLARKKDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAEVDSPWVVKLYYSFQDKEYLYL  218 (550)
T ss_pred             CcccchhheeeccccceeEEEEEEccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhhcCCCcEEEEEEEecCCCeeEE
Confidence            45799999999999999999998 6689999999987653   3556778888889999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHH------HcCchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSR------RGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i------~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||||+||||+..+|...+- .......++.+.      ++.+.|+|||+||+|+|   ++..+..||+|||++.
T Consensus       219 iMEylPGGD~mTLL~~~~~L~e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlL---iD~~GHiKLSDFGLs~  289 (550)
T KOG0605|consen  219 IMEYLPGGDMMTLLMRKDTLTEDWARFYIAETVLAIESIHQLGYIHRDIKPDNLL---IDAKGHIKLSDFGLST  289 (550)
T ss_pred             EEEecCCccHHHHHHhcCcCchHHHHHHHHHHHHHHHHHHHcCcccccCChhhee---ecCCCCEeeccccccc
Confidence            9999999999999997653 333333344443      44556789999999999   9999999999999986

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=99.93  E-value=2.4e-26  Score=158.27  Aligned_cols=140  Identities=21%  Similarity=0.199  Sum_probs=124.5

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|+..+.+|.|+||.|+.++ ..+|..+|+|.+...   +-+..+...+|.++++.+.||.++.+.+.+.+.+.+|+|
T Consensus        43 l~dfe~~~tlGtGSFGrV~LVr~k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~v~~PFlv~l~~t~~d~~~lymv  122 (355)
T KOG0616|consen   43 LQDFERLKTLGTGSFGRVHLVREKHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKAVSHPFLVKLYGTFKDNSNLYMV  122 (355)
T ss_pred             hhhhhheeeeccCccceEEEEEEccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhhccCceeEEEEEeeccCCeEEEE
Confidence            4688999999999999999998 457889999987543   345667889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||++||.|++++++.+. +.+....+.-+++.++.|+|      ||+||+|++   +++.+-.|++|||+|+.
T Consensus       123 meyv~GGElFS~Lrk~~rF~e~~arFYAAeivlAleylH~~~iiYRDLKPENiL---lD~~G~iKitDFGFAK~  193 (355)
T KOG0616|consen  123 MEYVPGGELFSYLRKSGRFSEPHARFYAAEIVLALEYLHSLDIIYRDLKPENLL---LDQNGHIKITDFGFAKR  193 (355)
T ss_pred             EeccCCccHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHhcCeeeccCChHHee---eccCCcEEEEeccceEE
Confidence            999999999999998764 66677777888999999977      899999999   99999999999999984

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=99.93  E-value=2.5e-26  Score=156.05  Aligned_cols=138  Identities=22%  Similarity=0.317  Sum_probs=120.2

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|...+.+|+|.||.||+|. ..+|+.||+|+++....  +......+|+..++.++|+||+.++++|...+.+.+|+|
T Consensus         2 ~rY~~~~~lGEG~~gvVyka~d~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel~h~nIi~LiD~F~~~~~l~lVfE   81 (318)
T KOG0659|consen    2 DRYEKLEKLGEGTYGVVYKARDTETGKRVAIKKIKLGNAKDGINRTALREIKLLQELKHPNIIELIDVFPHKSNLSLVFE   81 (318)
T ss_pred             chhhhhhhhcCcceEEEEEEEecCCCcEEEEEEeeccccccCccHHHHHHHHHHHHccCcchhhhhhhccCCCceEEEEE
Confidence            468888999999999999999 57899999999876533  334568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++. +|+..|++...  .......+.+++..|++|      +|||+||.|++   +..+...|++|||+|+.
T Consensus        82 fm~t-dLe~vIkd~~i~l~pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLL---is~~g~lKiADFGLAr~  150 (318)
T KOG0659|consen   82 FMPT-DLEVVIKDKNIILSPADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLL---ISSDGQLKIADFGLARF  150 (318)
T ss_pred             eccc-cHHHHhcccccccCHHHHHHHHHHHHHHHHHHHhhhhhcccCCccceE---EcCCCcEEeecccchhc
Confidence            9988 99999998764  334455667888889888      57999999999   89999999999999994

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=2.2e-26  Score=168.55  Aligned_cols=140  Identities=26%  Similarity=0.395  Sum_probs=120.8

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..+.+..++.||+|.||.|+.|.+.....+|+|.++.. ....+.|.+|+.+|+.++|++|++++++|..++.++||+||
T Consensus       204 ~r~~l~l~~~LG~G~FG~V~~g~~~~~~~vavk~ik~~-~m~~~~f~~Ea~iMk~L~H~~lV~l~gV~~~~~piyIVtE~  282 (468)
T KOG0197|consen  204 PREELKLIRELGSGQFGEVWLGKWNGSTKVAVKTIKEG-SMSPEAFLREAQIMKKLRHEKLVKLYGVCTKQEPIYIVTEY  282 (468)
T ss_pred             cHHHHHHHHHhcCCccceEEEEEEcCCCcccceEEecc-ccChhHHHHHHHHHHhCcccCeEEEEEEEecCCceEEEEEe
Confidence            44556777899999999999999876778999988654 33446788999999999999999999999998999999999


Q ss_pred             CCCCCHHHHHhhcC-c--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN-E--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~-~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++.|+|.++++... .  ....-..+..||+.|++|      +||||..-|||   +..+..+||+|||+||.
T Consensus       283 m~~GsLl~yLr~~~~~~l~~~~Ll~~a~qIaeGM~YLes~~~IHRDLAARNiL---V~~~~~vKIsDFGLAr~  352 (468)
T KOG0197|consen  283 MPKGSLLDYLRTREGGLLNLPQLLDFAAQIAEGMAYLESKNYIHRDLAARNIL---VDEDLVVKISDFGLARL  352 (468)
T ss_pred             cccCcHHHHhhhcCCCccchHHHHHHHHHHHHHHHHHHhCCccchhhhhhhee---eccCceEEEcccccccc
Confidence            99999999999732 2  445566778899999887      79999999999   89999999999999993

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=6.3e-28  Score=165.30  Aligned_cols=141  Identities=20%  Similarity=0.257  Sum_probs=120.7

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeee-eeecCCc-ce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLG-CCLETEV-PL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~-~~~~~~~-~~   86 (167)
                      ...+|.+.++||.|+||.||++. ..+|..+|.|.++-.  +....+.+..|+.++++++||||+++++ .+.+++. ++
T Consensus        17 ~l~~y~Il~~IG~GsFg~vykv~~~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQL~HpNIVqYy~~~f~~~~evln   96 (375)
T KOG0591|consen   17 TLADYQILKKIGRGSFGEVYKVQCLLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQLNHPNIVQYYAHSFIEDNEVLN   96 (375)
T ss_pred             cHHHHHHHHHHcCCcchheEEeeeccCcchhhhhhcchhhccHHHHHHHHHHHHHHHhcCCchHHHHHHHhhhccchhhH
Confidence            44579999999999999999998 679999999987633  4556678999999999999999999998 4444444 89


Q ss_pred             EEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh----------hhhcccchhHHHHhhhccCCccccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR----------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~----------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      +|||+|..|||.+.|+...     .+....|....|.+.++..          +|||+||.|||   ++....+|+.|||
T Consensus        97 ivmE~c~~GDLsqmIk~~K~qkr~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIF---l~~~gvvKLGDfG  173 (375)
T KOG0591|consen   97 IVMELCDAGDLSQMIKHFKKQKRLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIF---LTANGVVKLGDFG  173 (375)
T ss_pred             HHHHhhcccCHHHHHHHHHhccccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheE---EcCCCceeeccch
Confidence            9999999999999998532     2677899999999888865          68899999999   8999999999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      +++.
T Consensus       174 L~r~  177 (375)
T KOG0591|consen  174 LGRF  177 (375)
T ss_pred             hHhH
Confidence            9985

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=2.4e-26  Score=167.71  Aligned_cols=140  Identities=24%  Similarity=0.281  Sum_probs=121.7

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~l   87 (167)
                      .+.|+..++||+|.||.||+++ ..+|+.||+|++...  .++......+|+.+|++++||||+++.+...+.  ..+||
T Consensus       116 ~~~feki~kIGeGTyg~VYkAr~~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~l~HpNIikL~eivt~~~~~siYl  195 (560)
T KOG0600|consen  116 ADSFEKIEKIGEGTYGQVYKARDLETGKIVALKKVRFDNEKEGFPITAIREIKILRRLDHPNIIKLEEIVTSKLSGSIYL  195 (560)
T ss_pred             hHHHHHHHHhcCcchhheeEeeecccCcEEEEEEeecccCCCcchHHHHHHHHHHHhcCCCcccceeeEEEecCCceEEE
Confidence            3568888999999999999999 578999999987554  467777889999999999999999999998776  78999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      |+||++. ||.-++.....  .......++.|++.|+.|      +|||+|.+|+|   |+.++..||+|||+|++.
T Consensus       196 VFeYMdh-DL~GLl~~p~vkft~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiL---idn~G~LKiaDFGLAr~y  268 (560)
T KOG0600|consen  196 VFEYMDH-DLSGLLSSPGVKFTEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNIL---IDNNGVLKIADFGLARFY  268 (560)
T ss_pred             EEecccc-hhhhhhcCCCcccChHHHHHHHHHHHHHHHHHhhcCeeeccccccceE---EcCCCCEEeccccceeec
Confidence            9999987 99988887543  445667788899999988      57999999999   999999999999999954

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=99.92  E-value=3.9e-25  Score=160.82  Aligned_cols=141  Identities=27%  Similarity=0.361  Sum_probs=115.9

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-cceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETE-VPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-~~~lv~   89 (167)
                      -.+....+.+|+|+||+||++.+.....+|+|.+.....  ...+.+.+|+.++..++||||++++|++..+. .+.+|+
T Consensus        40 ~~~l~~~~~iG~G~~g~V~~~~~~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~f~G~~~~~~~~~~iVt  119 (362)
T KOG0192|consen   40 PDELPIEEVLGSGSFGTVYKGKWRGTDVVAVKIISDPDFDDESRKAFRREASLLSRLRHPNIVQFYGACTSPPGSLCIVT  119 (362)
T ss_pred             hHHhhhhhhcccCCceeEEEEEeCCceeEEEEEecchhcChHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCceEEEE
Confidence            344556667999999999999985444499998865432  22568999999999999999999999998887 789999


Q ss_pred             ecCCCCCHHHHHhhc---CcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccC-Cccccccchhhhh
Q 040049           90 EYIPNGNLSDYLHEQ---NEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGL-APKRKKFEEEKWR  156 (167)
Q Consensus        90 e~~~~g~L~~~i~~~---~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~-~~~l~df~~~~~~  156 (167)
                      ||+++|+|.+++...   ..........+++++.|+.|       +|+|+|+.|++   ++... .+||+|||++++.
T Consensus       120 Ey~~~GsL~~~l~~~~~~~l~~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiL---v~~~~~~~KI~DFGlsr~~  194 (362)
T KOG0192|consen  120 EYMPGGSLSVLLHKKRKRKLPLKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNIL---VDLKGKTLKIADFGLSREK  194 (362)
T ss_pred             EeCCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEE---EcCCCCEEEECCCccceee
Confidence            999999999999873   22555566677888887766       67899999999   88886 9999999999854

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=99.92  E-value=4.4e-25  Score=155.83  Aligned_cols=137  Identities=20%  Similarity=0.176  Sum_probs=118.5

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-ceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-PLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-~~lv~e~   91 (167)
                      +.+.+..||+|.-|+|+++.+ .+++.+|+|.+... ++....++.+|+++++..+||+||.++|.|..++. ++++|||
T Consensus        80 dle~~~~lG~G~gG~V~kv~Hk~t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~~spyIV~~ygaF~~~~~~isI~mEY  159 (364)
T KOG0581|consen   80 DLERLGVLGSGNGGTVYKVRHKPTGKIYALKVILLNIDPALQKQILRELEILRSCQSPYIVGFYGAFYSNGEEISICMEY  159 (364)
T ss_pred             HhhhhhhcccCCCcEEEEEEEcCCCeEEEEEeecccCCHHHHHHHHHHHHHHhhCCCCCeeeEeEEEEeCCceEEeehhh
Confidence            667788999999999999995 58999999988543 55667889999999999999999999999999885 9999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |.+|+|.+.++..+. ++..--....+++.||.|       +|||+||+|++   +.....+||||||-++
T Consensus       160 MDgGSLd~~~k~~g~i~E~~L~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlL---vNskGeVKicDFGVS~  227 (364)
T KOG0581|consen  160 MDGGSLDDILKRVGRIPEPVLGKIARAVLRGLSYLHEERKIIHRDIKPSNLL---VNSKGEVKICDFGVSG  227 (364)
T ss_pred             cCCCCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhccCeeeccCCHHHee---eccCCCEEeccccccH
Confidence            999999999987543 444555567778888877       57999999999   8889999999999887

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=99.92  E-value=8.2e-26  Score=162.11  Aligned_cols=141  Identities=20%  Similarity=0.270  Sum_probs=123.9

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .-+|++.+.||+|.||+|-++. ...|+.||+|.++..   +..+.-.+.+|+++|..++||||++++++|+.++.+.+|
T Consensus        52 kHRyE~~etLGkGTYGKVk~A~e~~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSsLNHPhII~IyEVFENkdKIviv  131 (668)
T KOG0611|consen   52 KHRYEITETLGKGTYGKVKLAYEHKSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSSLNHPHIIQIYEVFENKDKIVIV  131 (668)
T ss_pred             hhHHHHHHHhcCCcccceeehhhccCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhhcCCCceeehhhhhcCCceEEEE
Confidence            3478999999999999999998 678999999988665   344556678999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      |||..+|.|.+++..++. ..........||+.++.|      +|+|+|.+||+   ++.+...||+|||++.++
T Consensus       132 MEYaS~GeLYDYiSer~~LsErEaRhfFRQIvSAVhYCHknrVvHRDLKLENIL---LD~N~NiKIADFGLSNly  203 (668)
T KOG0611|consen  132 MEYASGGELYDYISERGSLSEREARHFFRQIVSAVHYCHKNRVVHRDLKLENIL---LDQNNNIKIADFGLSNLY  203 (668)
T ss_pred             EEecCCccHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhccceecccchhhee---ecCCCCeeeeccchhhhh
Confidence            999999999999998875 444566678889888888      57999999999   999999999999998754

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=4.7e-25  Score=163.36  Aligned_cols=148  Identities=25%  Similarity=0.382  Sum_probs=122.9

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeC--CC---cEEEEEeccC---CCcccHHHHHHHHHHHhcCCCCceeeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLA--DE---RIVAVKKSKV---VGKGKLDEFINKVVILSQINYRNVVKLLGC   78 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~---~~~avk~~~~---~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~   78 (167)
                      +.+....++..+.++||+|+||.|++|...  ++   ..||+|....   ........+++|+++|++++||||++++|+
T Consensus       150 ~~Wel~H~~v~l~kkLGeGaFGeV~~G~l~~~~~~~~~~VAvK~~k~~~~~~~~~~~e~m~EArvMr~l~H~NVVr~yGV  229 (474)
T KOG0194|consen  150 QKWELSHSDIELGKKLGEGAFGEVFKGKLKLKNGFKVVPVAVKTTKGSSELTKEQIKEFMKEARVMRQLNHPNVVRFYGV  229 (474)
T ss_pred             cccEEeccCccccceeecccccEEEEEEEEecCCceeeeeEEEeecccccccHHHHHHHHHHHHHHHhCCCCCEEEEEEE
Confidence            445555677777899999999999999843  22   2278887664   235566789999999999999999999999


Q ss_pred             eecCCcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccccc
Q 040049           79 CLETEVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        79 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      ...+.++++|||+|+||+|.+++++...  .......++.+.+.|+.|      +|||+..-|+|   +..+..+|++||
T Consensus       230 a~~~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~~~~~~AA~Gl~YLh~k~~IHRDIAARNcL---~~~~~~vKISDF  306 (474)
T KOG0194|consen  230 AVLEEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKLRFCYDAARGLEYLHSKNCIHRDIAARNCL---YSKKGVVKISDF  306 (474)
T ss_pred             EcCCCccEEEEEecCCCcHHHHHHhCCCCCCHHHHHHHHHHHHhHHHHHHHCCCcchhHhHHHhe---ecCCCeEEeCcc
Confidence            9999999999999999999999998764  344555668889999998      57999999999   788788999999


Q ss_pred             chhhhhh
Q 040049          151 EEEKWRH  157 (167)
Q Consensus       151 ~~~~~~~  157 (167)
                      |+++...
T Consensus       307 GLs~~~~  313 (474)
T KOG0194|consen  307 GLSRAGS  313 (474)
T ss_pred             ccccCCc
Confidence            9998653

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=99.91  E-value=2.8e-25  Score=164.60  Aligned_cols=140  Identities=23%  Similarity=0.250  Sum_probs=119.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|+||.||+|+. .+.+.||+|.+.+..  .++...+.+|+++++.++||||+.++++|++...+++|.|
T Consensus         2 e~yhv~e~iG~Gsfg~VYKgrrK~t~~~vAik~i~K~gr~~k~l~~l~~ev~i~r~lkHpniv~m~esfEt~~~~~vVte   81 (808)
T KOG0597|consen    2 EQYHVYEMIGEGSFGRVYKGRRKYTIQVVAIKFIDKSGRNEKELKNLRQEVRILRSLKHPNIVEMLESFETSAHLWVVTE   81 (808)
T ss_pred             cchhHHHHhcCCccceeeecccccceeEEEEEEehhcCCchHHHHHHHHHHHHHHhcCCcchhhHHHhhcccceEEEEeh
Confidence            5788899999999999999994 578999999887653  3456779999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      ||.| +|..++.+... ++........+.+.++.|      +|+|+||.||+   +.++...|+||||+|+.+.
T Consensus        82 ~a~g-~L~~il~~d~~lpEe~v~~~a~~LVsaL~yLhs~rilhrd~kPqniL---l~~~~~~KlcdFg~Ar~m~  151 (808)
T KOG0597|consen   82 YAVG-DLFTILEQDGKLPEEQVRAIAYDLVSALYYLHSNRILHRDMKPQNIL---LEKGGTLKLCDFGLARAMS  151 (808)
T ss_pred             hhhh-hHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhcCcccccCCcceee---ecCCCceeechhhhhhhcc
Confidence            9987 99999998765 444444445566666666      57999999999   9999999999999999764

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=2.6e-24  Score=157.53  Aligned_cols=143  Identities=18%  Similarity=0.190  Sum_probs=121.8

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC----Cc-ccHHHHHHHHHHHhcCC-CCceeeeeeeeecCC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV----GK-GKLDEFINKVVILSQIN-YRNVVKLLGCCLETE   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~----~~-~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~   83 (167)
                      ...+.|.+.+.||+|+||+|+.+. ..++..+|+|.+...    .. ...+.+.+|+.+++.++ ||||+++++++.+..
T Consensus        14 ~~~g~y~~~~~lG~GsfgkV~~a~~~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~~~HpnI~~l~ev~~t~~   93 (370)
T KOG0583|consen   14 LSIGKYELGRTLGSGSFGKVKLAKHRLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRLRSHPNIIRLLEVFATPT   93 (370)
T ss_pred             cccCceeeeeeecCCCCeeEEEeeeccCCCeEEEEEechhcccccccccchhhHHHHHHHHHhccCCCEeEEEEEEecCC
Confidence            346789999999999999999998 567899999976543    11 23455668999999998 999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      .+|+|||||.||+|.+.+.+.+. .+........|++.|+.|+      |||+|++|++   ++.. ..+|++|||++..
T Consensus        94 ~~~ivmEy~~gGdL~~~i~~~g~l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENil---ld~~~~~~Kl~DFG~s~~  170 (370)
T KOG0583|consen   94 KIYIVMEYCSGGDLFDYIVNKGRLKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENIL---LDGNEGNLKLSDFGLSAI  170 (370)
T ss_pred             eEEEEEEecCCccHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEE---ecCCCCCEEEeccccccc
Confidence            99999999999999999999544 4456667788999999884      6899999999   8888 9999999999985


Q ss_pred             h
Q 040049          156 R  156 (167)
Q Consensus       156 ~  156 (167)
                      .
T Consensus       171 ~  171 (370)
T KOG0583|consen  171 S  171 (370)
T ss_pred             c
Confidence            4

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.91  E-value=9.5e-26  Score=163.61  Aligned_cols=139  Identities=21%  Similarity=0.232  Sum_probs=117.1

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHH-HHHHHHHHHhcCC-CCceeeeeeeeecCC-cceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLD-EFINKVVILSQIN-YRNVVKLLGCCLETE-VPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~-~~~~e~~~~~~l~-h~~i~~l~~~~~~~~-~~~l   87 (167)
                      .-++|.++++||.|.||.||++. ..++..||+|.++..-..+.+ .-++|+..++++. ||||+++.+.+.+.+ .+++
T Consensus         8 ~m~RY~~i~klGDGTfGsV~la~~~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln~hpniikL~Evi~d~~~~L~f   87 (538)
T KOG0661|consen    8 FMDRYTVIRKLGDGTFGSVYLAKSKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNPHPNIIKLKEVIRDNDRILYF   87 (538)
T ss_pred             HHHHHHHHHHhcCCcceeEEEeeecCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcCCCCcchhhHHHhhccCceEee
Confidence            45689999999999999999998 568899999987654333322 2479999999998 999999999999888 8999


Q ss_pred             EEecCCCCCHHHHHhhcCcc--hHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNED--FVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~--~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+||++. +|.+++++++..  .......+.||..||+++      |||+||+||+   +.....+||+|||+||
T Consensus        88 VfE~Md~-NLYqLmK~R~r~fse~~irnim~QilqGL~hiHk~GfFHRDlKPENiL---i~~~~~iKiaDFGLAR  158 (538)
T KOG0661|consen   88 VFEFMDC-NLYQLMKDRNRLFSESDIRNIMYQILQGLAHIHKHGFFHRDLKPENIL---ISGNDVIKIADFGLAR  158 (538)
T ss_pred             eHHhhhh-hHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHhcCcccccCChhheE---ecccceeEeccccccc
Confidence            9999965 999999988653  344556688999999986      6999999998   5557788999999999

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=99.91  E-value=9.5e-25  Score=160.60  Aligned_cols=146  Identities=23%  Similarity=0.227  Sum_probs=121.6

Q ss_pred             HhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCc
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEV   84 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~   84 (167)
                      ....++|...+.||+|+|++|++|+ ..+++.+|+|++...   .........+|-.+|..+ .||+|++|+-.|.++..
T Consensus        69 kk~~~DF~Fg~~lGeGSYStV~~A~~~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L~~hPgivkLy~TFQD~~s  148 (604)
T KOG0592|consen   69 KKTPNDFKFGKILGEGSYSTVVLAREKATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQLSGHPGIVKLYFTFQDEES  148 (604)
T ss_pred             cCChhhcchhheeccccceeEEEeeecCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHhhCCCCeEEEEEEeecccc
Confidence            3456789999999999999999999 568999999976542   344456677888899998 79999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      +|+|+||+++|+|.++|++.+. ...-...+.-+|+.++.|      +|||+||+|||   ++++..++|+|||-|+...
T Consensus       149 LYFvLe~A~nGdll~~i~K~Gsfde~caR~YAAeIldAleylH~~GIIHRDlKPENIL---Ld~dmhikITDFGsAK~l~  225 (604)
T KOG0592|consen  149 LYFVLEYAPNGDLLDLIKKYGSFDETCARFYAAEILDALEYLHSNGIIHRDLKPENIL---LDKDGHIKITDFGSAKILS  225 (604)
T ss_pred             eEEEEEecCCCcHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHhcCceeccCChhhee---EcCCCcEEEeeccccccCC
Confidence            9999999999999999998764 333334456667777766      67999999999   9999999999999999654


Q ss_pred             h
Q 040049          158 T  158 (167)
Q Consensus       158 ~  158 (167)
                      +
T Consensus       226 ~  226 (604)
T KOG0592|consen  226 P  226 (604)
T ss_pred             h
Confidence            3

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=3.9e-25  Score=148.25  Aligned_cols=140  Identities=21%  Similarity=0.231  Sum_probs=122.4

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|++.+.||+|.||.||.++ .+++..+|+|.+..+   ......++.+|+++-..++||||++++++|.+....|+
T Consensus        20 ~l~dfeigr~LgkgkFG~vYlarekks~~IvalKVlfKsqi~~~~v~~qlrREiEIqs~L~hpnilrlY~~fhd~~riyL   99 (281)
T KOG0580|consen   20 TLDDFEIGRPLGKGKFGNVYLAREKKSLFIVALKVLFKSQILKTQVEHQLRREIEIQSHLRHPNILRLYGYFHDSKRIYL   99 (281)
T ss_pred             chhhccccccccCCccccEeEeeeccCCcEEEEeeeeHHHHHHhcchhhhhheeEeecccCCccHHhhhhheeccceeEE
Confidence            45789999999999999999998 667889999975432   33444678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||.++|++...++...   .....+|.++.|++.++.|      +|||+||+|++   +......+++|||.+=
T Consensus       100 ilEya~~gel~k~L~~~~~~~f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlL---lg~~~~lkiAdfGwsV  172 (281)
T KOG0580|consen  100 ILEYAPRGELYKDLQEGRMKRFDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLL---LGSAGELKIADFGWSV  172 (281)
T ss_pred             EEEecCCchHHHHHHhcccccccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhc---cCCCCCeeccCCCcee
Confidence            999999999999999543   3667899999999999988      68999999999   8888899999999864

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=99.90  E-value=3e-24  Score=150.21  Aligned_cols=141  Identities=18%  Similarity=0.227  Sum_probs=117.2

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccc
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLET--EVP   85 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~   85 (167)
                      ...++|+.+..|++|+||.||+++ .++++.||+|+++-...  +..=.-++|+.++..++||||+.+..+....  +.+
T Consensus        73 rsv~efe~lnrI~EGtyGiVYRakdk~t~eIVALKr~kmekek~GFPItsLREIniLl~~~H~NIV~vkEVVvG~~~d~i  152 (419)
T KOG0663|consen   73 RSVEEFEKLNRIEEGTYGVVYRAKDKKTDEIVALKRLKMEKEKEGFPITSLREINILLKARHPNIVEVKEVVVGSNMDKI  152 (419)
T ss_pred             ccHHHHHHHhhcccCcceeEEEeccCCcceeEEeeecccccccCCCcchhHHHHHHHHhcCCCCeeeeEEEEecccccee
Confidence            345789999999999999999999 46899999998765433  3333468999999999999999999988654  579


Q ss_pred             eEEEecCCCCCHHHHHhhcCcc--hHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNED--FVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~--~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|||||+. ||.+++.....+  ........+|.+.|+.|      +|||+|++|++   +...+..|++|||+||-
T Consensus       153 y~VMe~~Eh-DLksl~d~m~q~F~~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLL---m~~~G~lKiaDFGLAR~  226 (419)
T KOG0663|consen  153 YIVMEYVEH-DLKSLMETMKQPFLPGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLL---LSHKGILKIADFGLARE  226 (419)
T ss_pred             eeeHHHHHh-hHHHHHHhccCCCchHHHHHHHHHHHHHHHHHhhceeEecccchhhee---eccCCcEEecccchhhh
Confidence            999999988 999998876533  34455667888889888      57999999999   88888999999999994

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=99.90  E-value=1.9e-23  Score=153.99  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=120.0

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ++....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++.+.+++
T Consensus        37 ~~~~~~~~y~~~~~lG~G~fg~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~~~  116 (370)
T cd05621          37 KLQMKAEDYDVVKVIGRGAFGEVQLVRHKSSQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFCAFQDDK  116 (370)
T ss_pred             hcCCCHHHCeEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCC
Confidence            3444567899999999999999999995 56889999987532   2233456778999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++|+||+++|+|.+++.....+.........+++.++.+      +|+|+|++||+   +.+...++|+|||++..
T Consensus       117 ~~~lv~Ey~~gg~L~~~l~~~~~~~~~~~~~~~qil~aL~~LH~~~IvHrDLKp~NIL---l~~~~~~kL~DFG~a~~  191 (370)
T cd05621         117 YLYMVMEYMPGGDLVNLMSNYDVPEKWAKFYTAEVVLALDAIHSMGLIHRDVKPDNML---LDKHGHLKLADFGTCMK  191 (370)
T ss_pred             EEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEE---ECCCCCEEEEeccccee
Confidence            99999999999999999986554444555566778777776      57999999999   78889999999999874

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.90  E-value=1.7e-23  Score=148.70  Aligned_cols=141  Identities=22%  Similarity=0.225  Sum_probs=119.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC--cceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE--VPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~--~~~lv~   89 (167)
                      ..++...+.||+|+||.||.+.. .+|...|+|.+........+.+.+|+.++.+++|||||+++|.....+  .++++|
T Consensus        16 ~~~~~~~~~lG~Gs~G~V~l~~~~~~g~~~AvK~v~~~~~~~~~~l~~Ei~iL~~l~~p~IV~~~G~~~~~~~~~~~i~m   95 (313)
T KOG0198|consen   16 ISNWSKGKLLGRGSFGSVYLATNKKTGELMAVKSVELEDSPTSESLEREIRILSRLNHPNIVQYYGSSSSRENDEYNIFM   95 (313)
T ss_pred             cchhhhhccccCccceEEEEEEecCCCcceeeeeeecccchhHHHHHHHHHHHHhCCCCCEEeeCCccccccCeeeEeee
Confidence            34577889999999999999994 468999999876554333677899999999999999999999865555  588999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc-cCCccccccchhhhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK-GLAPKRKKFEEEKWR  156 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~~  156 (167)
                      ||+++|+|.+++...+  .+.+....+..+++.|+.|+      |+|+|++|+|   ++. +..+||+|||+++..
T Consensus        96 Ey~~~GsL~~~~~~~g~~l~E~~v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiL---l~~~~~~~KlaDFG~a~~~  168 (313)
T KOG0198|consen   96 EYAPGGSLSDLIKRYGGKLPEPLVRRYTRQILEGLAYLHSKGIVHCDIKPANIL---LDPSNGDVKLADFGLAKKL  168 (313)
T ss_pred             eccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCcccceEE---EeCCCCeEEeccCcccccc
Confidence            9999999999999876  36667777888999999885      6899999999   888 689999999998843

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.90  E-value=9e-24  Score=154.16  Aligned_cols=140  Identities=21%  Similarity=0.237  Sum_probs=121.1

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-ceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-PLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-~~lv~   89 (167)
                      ++|..++++|+|+||.++.++. .++..+++|.+....  ....+...+|+.+++++.||||+.+.+.|..++. ++|+|
T Consensus         4 ~~Ye~~~~iG~GafG~a~lvrhk~~~~~~vlK~I~l~~~t~~~r~~A~~E~~lis~~~hP~iv~y~ds~~~~~~~l~Ivm   83 (426)
T KOG0589|consen    4 DNYEVLRQVGRGAFGSALLVRHKSDDKLYVLKKINLEKLTEPERRSAIQEMDLLSKLLHPNIVEYKDSFEEDGQLLCIVM   83 (426)
T ss_pred             chhhhhhhcCccccchhhhhhhccCCceEEEEEEeccccCchhhHHHHHHHHHHHhccCCCeeeeccchhcCCceEEEEE
Confidence            5799999999999999998884 467889999876654  3344568899999999999999999999998887 99999


Q ss_pred             ecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           90 EYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +||+||++.+.|.....   +....+.+.+|++.++.|      +|||+|..|||   +.++..+++.|||+|+..
T Consensus        84 ~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nif---ltk~~~VkLgDfGlaK~l  156 (426)
T KOG0589|consen   84 EYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIF---LTKDKKVKLGDFGLAKIL  156 (426)
T ss_pred             eecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhh---ccccCceeecchhhhhhc
Confidence            99999999999998762   556677788888888887      56999999999   899999999999999954

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.90  E-value=2.7e-23  Score=153.54  Aligned_cols=138  Identities=20%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++. ..+++.+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..|+|+
T Consensus         1 ~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~   80 (377)
T cd05629           1 EDFHTVKVIGKGAFGEVRLVQKKDTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAESDSPWVVSLYYSFQDAQYLYLIM   80 (377)
T ss_pred             CCceEeEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCeeEEEE
Confidence            478999999999999999998 457899999987532   2233456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+|+.||+   +..+..++++|||+++
T Consensus        81 E~~~gg~L~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIl---l~~~~~~kl~DfGla~  149 (377)
T cd05629          81 EFLPGGDLMTMLIKYDTFSEDVTRFYMAECVLAIEAVHKLGFIHRDIKPDNIL---IDRGGHIKLSDFGLST  149 (377)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEE---ECCCCCEEEeeccccc
Confidence            99999999999886543 334444556677777776      57999999999   7788899999999986

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=99.90  E-value=3e-23  Score=152.56  Aligned_cols=139  Identities=18%  Similarity=0.184  Sum_probs=116.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|++.+.||+|+||.||++.. .+++.+|+|.+....   ......+..|+.++..++||+|+++++.+.+.+..++||
T Consensus         1 ~~y~~~~~LG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~~~~~~iv~~~~~~~~~~~~~lv~   80 (363)
T cd05628           1 EDFESLKVIGRGAFGEVRLVQKKDTGHVYAMKILRKADMLEKEQVGHIRAERDILVEADSLWVVKMFYSFQDKLNLYLIM   80 (363)
T ss_pred             CCceEeEEEEeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHhCCCCCcceEEEEEecCCeEEEEE
Confidence            4789999999999999999984 578999999875432   233456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+|++||+   +.....++|+|||+++.
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~givHrDlKp~NIL---i~~~~~vkL~DFGla~~  150 (363)
T cd05628          81 EFLPGGDMMTLLMKKDTLTEEETQFYIAETVLAIDSIHQLGFIHRDIKPDNLL---LDSKGHVKLSDFGLCTG  150 (363)
T ss_pred             cCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeE---ECCCCCEEEeeccCccc
Confidence            99999999999986543 445555667778777776      57999999999   77888999999999863

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=2.6e-23  Score=152.90  Aligned_cols=139  Identities=22%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..++||||+++++++.+++..++|+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (364)
T cd05599           1 DDFESIKVIGRGAFGEVRLVQKKDTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAEADNPWVVKLYYSFQDENYLYLIM   80 (364)
T ss_pred             CCceEEEEEEecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCeEEEEE
Confidence            4789999999999999999994 57899999987643   2234456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+|+.||+   +..+..++++|||.++.
T Consensus        81 E~~~~g~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl---~~~~~~~kl~Dfg~~~~  150 (364)
T cd05599          81 EYLPGGDMMTLLMKKDTFTEEETRFYIAETILAIDSIHKLGYIHRDIKPDNLL---LDAKGHIKLSDFGLCTG  150 (364)
T ss_pred             CCCCCcHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeE---ECCCCCEEEeeccccee
Confidence            99999999999886543 444555667788888877      47999999999   88888999999998863

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=99.89  E-value=5.2e-23  Score=151.95  Aligned_cols=138  Identities=18%  Similarity=0.156  Sum_probs=115.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++.+.+.+.+++||
T Consensus         1 ~~y~~~~~lG~G~~g~V~~a~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~   80 (376)
T cd05598           1 SMFVKIKTIGIGAFGEVCLVRKVDTNALYAMKTLRKADVLMRNQAAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVM   80 (376)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHhCCCCCcceEEEEEEcCCEEEEEE
Confidence            4789999999999999999984 57899999987542   2234456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+|+.|++   +..+..++|+|||++.
T Consensus        81 E~~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nil---l~~~~~ikL~DFG~a~  149 (376)
T cd05598          81 DYIPGGDMMSLLIRLGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNIL---IDRDGHIKLTDFGLCT  149 (376)
T ss_pred             eCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEE---ECCCCCEEEEeCCCCc
Confidence            99999999999987643 344455556788888877      47999999999   7888899999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=99.89  E-value=6e-23  Score=151.89  Aligned_cols=137  Identities=20%  Similarity=0.185  Sum_probs=114.3

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .|..++.||+|+||.||++. ..+++.+|+|.+...   .......+.+|+.++..++||||+++++.+.+.+..++|+|
T Consensus         2 ~f~~~~~LG~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~l~h~~iv~l~~~~~~~~~~~lv~E   81 (381)
T cd05626           2 MFVKIKTLGIGAFGEVCLACKVDTHALYAMKTLRKKDVLNRNQVAHVKAERDILAEADNEWVVKLYYSFQDKDNLYFVMD   81 (381)
T ss_pred             CceEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhcCCCCeeeeEEEEecCCEEEEEEe
Confidence            68889999999999999998 457889999987643   23345668899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++|+|.+++..... ........+.+++.++.+      +|+|+|++|++   +.....++++|||+++
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nil---i~~~~~~kL~DFGl~~  149 (381)
T cd05626          82 YIPGGDMMSLLIRMEVFPEVLARFYIAELTLAIESVHKMGFIHRDIKPDNIL---IDLDGHIKLTDFGLCT  149 (381)
T ss_pred             cCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEE---ECCCCCEEEeeCcCCc
Confidence            9999999999876543 334444556677777766      57999999999   7788899999999875

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=99.89  E-value=5.2e-23  Score=152.24  Aligned_cols=137  Identities=18%  Similarity=0.171  Sum_probs=114.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .|..++.||+|+||.||++.. .+++.+|+|.+....   ......+.+|+.+++.++||||+++++.+.+.+..++|||
T Consensus         2 ~f~~~~~LG~G~~g~Vy~a~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~~~h~~iv~~~~~~~~~~~~~lv~E   81 (382)
T cd05625           2 MFVKIKTLGIGAFGEVCLARKVDTKALYAMKTLRKKDVLLRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFVMD   81 (382)
T ss_pred             CcEEEEEEEeCCCEEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhCCCCcCCeEEEEEEeCCEEEEEEe
Confidence            588899999999999999984 578899999875432   2334568889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++|+|.+.+..... ........+.+++.++.+      +|+|+|++||+   +..+..++++|||++.
T Consensus        82 ~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NIL---l~~~g~~kL~DFGla~  149 (382)
T cd05625          82 YIPGGDMMSLLIRMGIFPEDLARFYIAELTCAVESVHKMGFIHRDIKPDNIL---IDRDGHIKLTDFGLCT  149 (382)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCCEEEeECCCCc
Confidence            9999999999876543 334444556677777766      57999999999   8888999999999874

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.89  E-value=1.3e-23  Score=158.10  Aligned_cols=140  Identities=22%  Similarity=0.248  Sum_probs=122.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|....+||+|+||+|+.+.. .+++.+|||.+++.   ...+.+..+.|.+++..+. ||.+++++.+|.+++.+|
T Consensus       366 ~l~~F~~l~vLGkGsFGkV~lae~k~~~e~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la~~HPFL~~L~~~fQT~~~l~  445 (694)
T KOG0694|consen  366 TLDDFRLLAVLGRGSFGKVLLAELKGTNEYYAIKVLKKGDILQRDEVESLMCEKRIFELANRHPFLVNLFSCFQTKEHLF  445 (694)
T ss_pred             cccceEEEEEeccCcCceEEEEEEcCCCcEEEEEEeeccceeccccHHHHHHHHHHHHHhccCCeEeecccccccCCeEE
Confidence            457899999999999999999994 57889999987654   4567888999999998885 999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||+.|||+..+++...........+.-.++.||.|+|      ||+|.+|++   ++..+.+||+|||+++
T Consensus       446 fvmey~~Ggdm~~~~~~~~F~e~rarfyaAev~l~L~fLH~~~IIYRDlKLdNiL---LD~eGh~kiADFGlcK  516 (694)
T KOG0694|consen  446 FVMEYVAGGDLMHHIHTDVFSEPRARFYAAEVVLGLQFLHENGIIYRDLKLDNLL---LDTEGHVKIADFGLCK  516 (694)
T ss_pred             EEEEecCCCcEEEEEecccccHHHHHHHHHHHHHHHHHHHhcCceeeecchhheE---EcccCcEEeccccccc
Confidence            9999999999766655555566667777888899999876      899999999   9999999999999998

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=99.89  E-value=2.2e-23  Score=149.23  Aligned_cols=141  Identities=21%  Similarity=0.163  Sum_probs=119.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .-+.|.+++.||.|..|.||.++. .++..+|+|.+...   ......+...|-++++.++||.++.|+..++++.+.++
T Consensus        75 ~l~~f~llk~LG~GdiG~VyL~~l~~t~~~fAmKVmdK~~l~~rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet~~~~cl  154 (459)
T KOG0610|consen   75 GLRHFRLLKRLGCGDIGTVYLVELRGTNCLFAMKVMDKESLASRKKLKRAQTEREILSLLDHPFLPTLYASFETDKYSCL  154 (459)
T ss_pred             CHHHHHHHHHcCCCCceeEEEEEecCCCceEEEEEecHHHHhhhhHHHHHHHHHHHHHhcCCCccchhhheeeccceeEE
Confidence            345788899999999999999995 46789999988654   23445567788899999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+||+|+.+.+.+..   .......++-.++.||.|+|      ||+||+||+   +-+++.+.++||.++..
T Consensus       155 ~meyCpGGdL~~LrqkQp~~~fse~~aRFYaAEvl~ALEYLHmlGivYRDLKPENIL---vredGHIMLsDFDLS~~  228 (459)
T KOG0610|consen  155 VMEYCPGGDLHSLRQKQPGKRFSESAARFYAAEVLLALEYLHMLGIVYRDLKPENIL---VREDGHIMLSDFDLSLR  228 (459)
T ss_pred             EEecCCCccHHHHHhhCCCCccchhhHHHHHHHHHHHHHHHHhhceeeccCCcceeE---EecCCcEEeeecccccc
Confidence            9999999999998887653   33445556777888898887      899999999   88889999999998763

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=8.3e-23  Score=148.60  Aligned_cols=139  Identities=21%  Similarity=0.240  Sum_probs=116.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..++||||+++++.+...+..++++
T Consensus         1 ~~y~~~~~ig~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~   80 (333)
T cd05600           1 KDFQILTQVGQGGYGQVFLAKKKDTGEIVALKRMKKSLLFKLNEVRHVLTERDILTTTKSEWLVKLLYAFQDDEYLYLAM   80 (333)
T ss_pred             CCcEEEEEEeecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhCCCCCCccEEEEEEcCCEEEEEE
Confidence            4789999999999999999995 46889999987543   2234456888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+++.||+   +.....++|+|||+++.
T Consensus        81 e~~~g~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~kL~Dfg~a~~  150 (333)
T cd05600          81 EYVPGGDFRTLLNNLGVLSEDHARFYMAEMFEAVDALHELGYIHRDLKPENFL---IDASGHIKLTDFGLSKG  150 (333)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---ECCCCCEEEEeCcCCcc
Confidence            99999999999986543 444555566777777766      57999999999   78888999999999874

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=99.89  E-value=4.9e-23  Score=151.79  Aligned_cols=144  Identities=18%  Similarity=0.187  Sum_probs=118.9

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      .....++|.+.+.||+|+||.||++.. .++..+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+.
T Consensus        38 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~h~~iv~~~~~~~~~~~  117 (370)
T cd05596          38 LRMKAEDFDVIKVIGRGAFGEVQLVRHKSSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAHANSEWIVQLHYAFQDDKY  117 (370)
T ss_pred             CCCCHHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            334567899999999999999999984 57889999987532   22334557789999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++|+||+++|+|.+++.............+.+++.++.+      +|+|+++.|++   +.++..++|+|||.+..
T Consensus       118 ~~lv~Ey~~gg~L~~~l~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIL---l~~~~~~kL~DfG~~~~  191 (370)
T cd05596         118 LYMVMEYMPGGDLVNLMSNYDIPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNML---LDKSGHLKLADFGTCMK  191 (370)
T ss_pred             EEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE---EcCCCCEEEEeccceee
Confidence            9999999999999999876544444444556778888877      47999999999   88889999999998863

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.89  E-value=5.7e-23  Score=151.49  Aligned_cols=147  Identities=18%  Similarity=0.185  Sum_probs=121.2

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      ..++....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++.+..
T Consensus        35 ~~~~~~~~~~y~i~~~lG~G~fg~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~~~hp~iv~~~~~~~~  114 (371)
T cd05622          35 IRDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD  114 (371)
T ss_pred             HhhcCcchhhcEEEEEEeecCCeEEEEEEECCCCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc
Confidence            345566678999999999999999999984 57889999987532   22334557788999999999999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+..++++||+++|+|.+++.....+.........+++.++.+      +|+|+|+.|++   +..+..++|+|||.++.
T Consensus       115 ~~~~~lv~Ey~~gg~L~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIl---l~~~~~ikL~DfG~a~~  191 (371)
T cd05622         115 DRYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNML---LDKSGHLKLADFGTCMK  191 (371)
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEE---ECCCCCEEEEeCCceeE
Confidence            9999999999999999999987654444555566777777776      57999999999   78888999999999863

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=99.89  E-value=7.8e-23  Score=148.58  Aligned_cols=141  Identities=15%  Similarity=0.115  Sum_probs=118.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|+.+++.++||||+++++.+...+..++
T Consensus        16 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~l   95 (329)
T PTZ00263         16 KLSDFEMGETLGTGSFGRVRIAKHKGTGEYYAIKCLKKREILKMKQVQHVAQEKSILMELSHPFIVNMMCSFQDENRVYF   95 (329)
T ss_pred             CchheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCcEEEEEEcCCEEEE
Confidence            357899999999999999999995 57889999987542   22344668899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++|+|.+.+..... +.........+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        96 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIl---l~~~~~~kl~Dfg~~~~  167 (329)
T PTZ00263         96 LLEFVVGGELFTHLRKAGRFPNDVAKFYHAELVLAFEYLHSKDIIYRDLKPENLL---LDNKGHVKVTDFGFAKK  167 (329)
T ss_pred             EEcCCCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEE---ECCCCCEEEeeccCceE
Confidence            9999999999999987643 444455556777777777      57999999999   88888999999998873

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.9e-23  Score=155.35  Aligned_cols=143  Identities=21%  Similarity=0.262  Sum_probs=123.8

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+-|.+.+.||.|+-|.|..|+ ..+|+.+|||.+...   .........+|+-+|+.+.|||++++++.|+++..+|+
T Consensus        10 tiGpwkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkLi~HpnVl~LydVwe~~~~lyl   89 (786)
T KOG0588|consen   10 TIGPWKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKLIEHPNVLRLYDVWENKQHLYL   89 (786)
T ss_pred             cccceeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHHhcCCCeeeeeeeeccCceEEE
Confidence            44678899999999999999998 579999999988654   23345668899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      |.||++||.|++++-.++. .......+..||+.|+.|      +|||+|++|+|   ++.....||+|||.|-++.
T Consensus        90 vlEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlL---Ld~~~nIKIADFGMAsLe~  163 (786)
T KOG0588|consen   90 VLEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLL---LDVKNNIKIADFGMASLEV  163 (786)
T ss_pred             EEEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhh---hhcccCEeeeccceeeccc
Confidence            9999999999999998875 556677778888877766      67999999999   8888889999999988764

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=99.89  E-value=4.9e-23  Score=147.22  Aligned_cols=139  Identities=20%  Similarity=0.203  Sum_probs=116.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+....   ....+.+.+|+.+++.++||||+++++.+.+.+..++++
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   80 (291)
T cd05612           1 DDLERIKTVGTGTFGRVHLVRDRISEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKEVSHPFIIRLFWTEHDQRFLYMLM   80 (291)
T ss_pred             CCceeeeeeecCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHhCCCCcHhhhHhhhccCCeEEEEE
Confidence            4688999999999999999985 478999999875432   233456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++..... ........+.+++.++.+      +|+|+++.||+   +.....++++|||.++.
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIl---i~~~~~~kl~Dfg~~~~  150 (291)
T cd05612          81 EYVPGGELFSYLRNSGRFSNSTGLFYASEIVCALEYLHSKEIVYRDLKPENIL---LDKEGHIKLTDFGFAKK  150 (291)
T ss_pred             eCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeE---ECCCCCEEEEecCcchh
Confidence            99999999999987643 445555667788888877      47899999999   77888999999999873

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=99.88  E-value=2.6e-22  Score=147.46  Aligned_cols=138  Identities=20%  Similarity=0.200  Sum_probs=115.7

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|...+.||+|+||.||++.. .+++.+|+|.+...   .......+..|+.++..++||+++++++.+.+.+..++||
T Consensus         1 ~~f~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~~~~lv~   80 (360)
T cd05627           1 DDFESLKVIGRGAFGEVRLVQKKDTGHIYAMKILRKADMLEKEQVAHIRAERDILVEADGAWVVKMFYSFQDKRNLYLIM   80 (360)
T ss_pred             CCceEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4688999999999999999984 57899999987542   2334456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++.+... ........+.+++.++.+      +|+|+|++||+   +.....++++|||.++
T Consensus        81 E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIl---i~~~~~vkL~DfG~~~  149 (360)
T cd05627          81 EFLPGGDMMTLLMKKDTLSEEATQFYIAETVLAIDAIHQLGFIHRDIKPDNLL---LDAKGHVKLSDFGLCT  149 (360)
T ss_pred             eCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEE---ECCCCCEEEeeccCCc
Confidence            99999999999986543 444555566777777766      57999999999   7888899999999876

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=99.88  E-value=2.1e-22  Score=146.96  Aligned_cols=141  Identities=21%  Similarity=0.177  Sum_probs=116.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CC-CcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-AD-ERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~-~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+ +..+|+|.+...   .....+.+.+|+.++..++||||+++++++.+.+..+
T Consensus        28 ~~~~y~~~~~ig~G~~g~Vy~a~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~  107 (340)
T PTZ00426         28 KYEDFNFIRTLGTGSFGRVILATYKNEDFPPVAIKRFEKSKIIKQKQVDHVFSERKILNYINHPFCVNLYGSFKDESYLY  107 (340)
T ss_pred             ChhhcEEEEEEeecCCeEEEEEEEECCCCeEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhCCCCCCcceEEEEEeCCEEE
Confidence            346799999999999999999974 33 368999977532   2334567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|||+++|+|.+++..... ........+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       108 lv~Ey~~~g~L~~~i~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIL---l~~~~~ikL~DFG~a~~  180 (340)
T PTZ00426        108 LVLEFVIGGEFFTFLRRNKRFPNDVGCFYAAQIVLIFEYLQSLNIVYRDLKPENLL---LDKDGFIKMTDFGFAKV  180 (340)
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEE---ECCCCCEEEecCCCCee
Confidence            99999999999999986543 344455566777777776      57999999999   78888999999999874

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.88  E-value=1.7e-22  Score=148.11  Aligned_cols=146  Identities=19%  Similarity=0.170  Sum_probs=119.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~   86 (167)
                      ....|.+.+.||+|.||.|+.|.. .+|+.+|+|.+.....   .+.+.+.+|+.+|+.+. |||++++.+.+++...++
T Consensus        33 ~~~~Y~l~~~lG~G~Fg~v~~~~~~~tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~~hpniv~l~~~~e~~~~~~  112 (382)
T KOG0032|consen   33 IKEKYELGRELGRGQFGVVYLCREKSTGKEVACKVIPKRKLRGKEDREDVRREVAILQQLSGHPNIVQLKDAFEDPDSVY  112 (382)
T ss_pred             ccccEEehhhhCCCCceEEEEEEecCCCceeEEEEeehhhccccccHHHHHHHHHHHHhccCCCCEEEEEEEEEcCCeEE
Confidence            456789999999999999999994 5699999998866533   34568999999999998 999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhhhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKWRH  157 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~~~  157 (167)
                      +|||+|.||.|.+.+.............+.+++.++.+      +|+|+||+|+++..... ....+++|||+|.+..
T Consensus       113 lvmEL~~GGeLfd~i~~~~~sE~da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~  190 (382)
T KOG0032|consen  113 LVMELCEGGELFDRIVKKHYSERDAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIK  190 (382)
T ss_pred             EEEEecCCchHHHHHHHccCCHHHHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEcc
Confidence            99999999999999998622333444556677777666      57999999999664443 3478999999998654

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1.6e-22  Score=146.12  Aligned_cols=143  Identities=16%  Similarity=0.186  Sum_probs=122.9

Q ss_pred             HhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+.++|.+.+.||.|.-+.||+|+ .+.+..||||++...+ ..+.+.+.+|+..|+.++||||++++..|..+..+|+
T Consensus        22 p~n~~~YeL~e~IG~G~sa~V~~A~c~p~~e~VAIK~inLEkc~~~ld~l~kE~~~msl~~HPNIv~~~~sFvv~~~LWv  101 (516)
T KOG0582|consen   22 PLNAKDYELQEVIGVGASAVVYLARCIPTNEVVAIKIINLEKCNNDLDALRKEVQTMSLIDHPNIVTYHCSFVVDSELWV  101 (516)
T ss_pred             CCCccceeEEEEEeccceeEeeeeeecccCCEEEEEEeehhhhhhhHHHHHHHHHHhhhcCCCCcceEEEEEEecceeEE
Confidence            4466899999999999999999998 6788999999987653 3346889999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||.|+.+|++.+.++..-+   ++........+++.||.|      +|||+|..||+   ++.++.++|+|||.+-+
T Consensus       102 VmpfMa~GS~ldIik~~~~~Gl~E~~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnIL---i~~dG~VkLadFgvsa~  175 (516)
T KOG0582|consen  102 VMPFMAGGSLLDIIKTYYPDGLEEASIATILREVLKALDYLHQNGHIHRDVKAGNIL---IDSDGTVKLADFGVSAS  175 (516)
T ss_pred             eehhhcCCcHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhcCceecccccccEE---EcCCCcEEEcCceeeee
Confidence            9999999999999997532   344444556677888877      57999999999   99999999999997653

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=99.88  E-value=1.3e-22  Score=142.85  Aligned_cols=139  Identities=20%  Similarity=0.232  Sum_probs=117.5

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCc-eeeeeeeeecCC-----
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRN-VVKLLGCCLETE-----   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~-i~~l~~~~~~~~-----   83 (167)
                      ...|..++.+|+|.||+||+|+ ..+|+.||+|++.....  +-.....+|+.+++.++|+| |+.+.+++.+.+     
T Consensus        10 ~~~~~~~eklGeGtyg~Vykar~~~~g~~VALKkirl~~~~EG~P~taiREisllk~L~~~~~iv~L~dv~~~~~~~~~~   89 (323)
T KOG0594|consen   10 MFDYEKVEKLGEGTYGVVYKARSKRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRLSHANHIVRLHDVIHTSNNHRGI   89 (323)
T ss_pred             HHHHHHHHHhCCCCceEEEEEEEecCCCEEEEEEEeccccccCCCchhhHHHHHHHHhCCCcceEEEEeeeeeccccccc
Confidence            3457778889999999999999 56899999998876533  34566789999999999999 999999998877     


Q ss_pred             -cceEEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           84 -VPLLVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        84 -~~~lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                       .+++|+||+.. +|..++....     .+.........|++.|++|      +|||+||.|++   +++....|++|||
T Consensus        90 ~~l~lvfe~~d~-DL~~ymd~~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlL---i~~~G~lKlaDFG  165 (323)
T KOG0594|consen   90 GKLYLVFEFLDR-DLKKYMDSLPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLL---ISSSGVLKLADFG  165 (323)
T ss_pred             ceEEEEEEeecc-cHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEE---ECCCCcEeeeccc
Confidence             78999999977 9999998755     2334566678899999988      57999999999   8889999999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      +|+.
T Consensus       166 lAra  169 (323)
T KOG0594|consen  166 LARA  169 (323)
T ss_pred             hHHH
Confidence            9983

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-22  Score=147.48  Aligned_cols=145  Identities=19%  Similarity=0.207  Sum_probs=119.0

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC--------------cccHHHHHHHHHHHhcCCCCc
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG--------------KGKLDEFINKVVILSQINYRN   71 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~--------------~~~~~~~~~e~~~~~~l~h~~   71 (167)
                      .+-....|+|.+...||+|.||+|-+++ ..+++.+|+|++....              -...+...+|+.+|++++|||
T Consensus        90 ~~~~k~lNqy~l~~eiG~G~yGkVkLar~~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKkl~H~n  169 (576)
T KOG0585|consen   90 DQDRKQLNQYELIKEIGSGQYGKVKLARDEVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKKLHHPN  169 (576)
T ss_pred             cccceehhheehhhhhcCCccceEEEEeecCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHhcCCcC
Confidence            4445677999999999999999999999 4578999999875421              123467889999999999999


Q ss_pred             eeeeeeeeecC--CcceEEEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc
Q 040049           72 VVKLLGCCLET--EVPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        72 i~~l~~~~~~~--~~~~lv~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~  142 (167)
                      +|+|+++..++  +.+|||+|||..|.+...--+.. ..+...+.+...++.||.|+      |||+||+|+|   +...
T Consensus       170 VV~LiEvLDDP~s~~~YlVley~s~G~v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLL---l~~~  246 (576)
T KOG0585|consen  170 VVKLIEVLDDPESDKLYLVLEYCSKGEVKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLL---LSSD  246 (576)
T ss_pred             eeEEEEeecCcccCceEEEEEeccCCccccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheE---EcCC
Confidence            99999999776  56999999999888754433333 24567788888999999884      7999999999   8889


Q ss_pred             CCccccccchhh
Q 040049          143 LAPKRKKFEEEK  154 (167)
Q Consensus       143 ~~~~l~df~~~~  154 (167)
                      ..+||+|||-+.
T Consensus       247 g~VKIsDFGVs~  258 (576)
T KOG0585|consen  247 GTVKISDFGVSN  258 (576)
T ss_pred             CcEEeeccceee
Confidence            999999999765

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.88  E-value=6.8e-22  Score=142.07  Aligned_cols=139  Identities=24%  Similarity=0.415  Sum_probs=112.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC-----------------CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-----------------DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVK   74 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-----------------~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~   74 (167)
                      .++|.+.+.||+|+||.||+|...                 ++..+|+|.+..... .....+.+|+.++..++||||++
T Consensus         4 ~~~~~~~~~lg~G~fg~V~~~~~~~~~~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~   83 (304)
T cd05096           4 RGHLLFKEKLGEGQFGEVHLCEVVNPQDLPTLQFPFNVRKGRPLLVAVKILRPDANKNARNDFLKEVKILSRLKDPNIIR   83 (304)
T ss_pred             hhhCeeeeEecccCCeEEEEEEeccCcccccccccccccCCcceEEEEEEecCCCCHHHHHHHHHHHHHHhhcCCCCeeE
Confidence            467889999999999999999742                 234689998765432 23456889999999999999999


Q ss_pred             eeeeeecCCcceEEEecCCCCCHHHHHhhcCc--------------------chHhhHHHHHHHHcCchh------hhhc
Q 040049           75 LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE--------------------DFVKDVGFILSRRGGIPR------LKRK  128 (167)
Q Consensus        75 l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~--------------------~~~~~~~~~~~i~~~l~~------~h~~  128 (167)
                      +++++.+.+..++++||+++|+|.+++.....                    .....+..+.+++.++.+      +|+|
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~d  163 (304)
T cd05096          84 LLGVCVDEDPLCMITEYMENGDLNQFLSSHHLDDKEENGNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRD  163 (304)
T ss_pred             EEEEEecCCceEEEEecCCCCcHHHHHHhccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccC
Confidence            99999999999999999999999999875421                    112344566777777776      5789


Q ss_pred             ccchhHHHHhhhccCCccccccchhh
Q 040049          129 KKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++.|++   +..+..++++|||.++
T Consensus       164 lkp~Nil---l~~~~~~kl~DfG~~~  186 (304)
T cd05096         164 LATRNCL---VGENLTIKIADFGMSR  186 (304)
T ss_pred             cchhheE---EcCCccEEECCCccce
Confidence            9999999   7888899999999986

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=4.5e-23  Score=158.36  Aligned_cols=139  Identities=23%  Similarity=0.372  Sum_probs=115.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      +.+....+.||+|+||+||+++..      ....||||.++..... ....|.+|++++..++|||||+++|.|...++.
T Consensus       485 r~~i~~~~eLGegaFGkVf~a~~~~l~p~~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~l~H~nIVrLlGVC~~~~P~  564 (774)
T KOG1026|consen  485 RSDIVFKEELGEGAFGKVFLAEAYGLLPGQDEQLVAVKALKDKAENQARQDFRREAELLAELQHPNIVRLLGVCREGDPL  564 (774)
T ss_pred             hhheeehhhhcCchhhhhhhhhccCCCCCccceehhHhhhcccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEccCCee
Confidence            455667788999999999999732      2467999988766554 667899999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-----------chHhhHH----HHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-----------DFVKDVG----FILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-----------~~~~~~~----~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                      ++|+||+..|||.++++-..+           +.++...    ...|||.|+.|      +||||..-|++   +-.+..
T Consensus       565 ~MvFEYm~~GDL~eFLra~sP~a~~~~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCL---Vge~l~  641 (774)
T KOG1026|consen  565 CMVFEYMDHGDLHEFLRARSPKADKLASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCL---VGENLV  641 (774)
T ss_pred             EEEEEecccccHHHHHHhhCCccccccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhce---eccceE
Confidence            999999999999999996542           1123333    35567777766      69999999999   889999


Q ss_pred             ccccccchhh
Q 040049          145 PKRKKFEEEK  154 (167)
Q Consensus       145 ~~l~df~~~~  154 (167)
                      +||+|||++|
T Consensus       642 VKIsDfGLsR  651 (774)
T KOG1026|consen  642 VKISDFGLSR  651 (774)
T ss_pred             EEecccccch
Confidence            9999999998

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=99.88  E-value=5.6e-22  Score=144.20  Aligned_cols=140  Identities=19%  Similarity=0.162  Sum_probs=117.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|++.+.||+|+||.||++.. .++..+|+|.+... .......+.+|+++++.++|||++++++++...+..++++
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (331)
T cd06649           3 KDDDFERISELGAGNGGVVTKVQHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (331)
T ss_pred             CcccceEEEeecCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEEe
Confidence            357899999999999999999984 47888999987643 2334567899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++..... +....+....+++.++.+       +|+|+++.|++   +.....++++|||.++
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~~~  152 (331)
T cd06649          83 EHMDGGSLDQVLKEAKRIPEEILGKVSIAVLRGLAYLREKHQIMHRDVKPSNIL---VNSRGEIKLCDFGVSG  152 (331)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEcCCCChhhEE---EcCCCcEEEccCcccc
Confidence            99999999999986543 444555667777777765       47899999999   7888889999999886

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.1e-22  Score=151.31  Aligned_cols=140  Identities=22%  Similarity=0.364  Sum_probs=119.5

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCccc-HHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~-~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++...++++||+|.||+|+.|....+..||+|.++...... +..|.+|+++|.+++||||+.+.|.|..++++++++|
T Consensus       536 PRs~L~~~ekiGeGqFGEVhLCeveg~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqLkhPNIveLvGVC~~DePicmI~E  615 (807)
T KOG1094|consen  536 PRSRLRFKEKIGEGQFGEVHLCEVEGPLKVAVKILRPDATKNARNDFLKEIKILSRLKHPNIVELLGVCVQDDPLCMITE  615 (807)
T ss_pred             chhheehhhhhcCcccceeEEEEecCceEEEEeecCcccchhHHHHHHHHHHHHhccCCCCeeEEEeeeecCCchHHHHH
Confidence            345667889999999999999997678999999988765444 4789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcch---HhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDF---VKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~---~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++|+|-+++.....+.   ........||+.|++|      +|+|+.+-|++   ++.+.++|++|||.++
T Consensus       616 YmEnGDLnqFl~aheapt~~t~~~vsi~tqiasgmaYLes~nfVHrd~a~rNcL---v~~e~~iKiadfgmsR  685 (807)
T KOG1094|consen  616 YMENGDLNQFLSAHELPTAETAPGVSICTQIASGMAYLESLNFVHRDLATRNCL---VDGEFTIKIADFGMSR  685 (807)
T ss_pred             HHhcCcHHHHHHhccCcccccchhHHHHHHHHHHHHHHHhhchhhcccccccee---ecCcccEEecCccccc
Confidence            999999999999774322   2333456677776665      79999999999   9999999999999988

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=7.4e-23  Score=144.21  Aligned_cols=144  Identities=17%  Similarity=0.176  Sum_probs=120.8

Q ss_pred             HHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccC--CCcccHHHHHHHHHHHhcCCCCceeeeeeeeec----
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVKLLGCCLE----   81 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~--~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----   81 (167)
                      .......|...+.||.|++|.|..+. ..+|..||+|++..  ......++..+|++.++.++|+||+.+.+.+..    
T Consensus        17 ~~~i~~~y~~~~~iG~GAyGvVcsA~~~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~~HeNIi~l~di~~p~~~~   96 (359)
T KOG0660|consen   17 LFEIPRYYVLIEPIGRGAYGVVCSAKDKRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHLRHENIIGLLDIFRPPSRD   96 (359)
T ss_pred             EEeccceecccccccCcceeeEEEEEEcCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHhcCCCcceEEeeccccccc
Confidence            34455677778999999999999998 46899999998763  345566788999999999999999999999865    


Q ss_pred             -CCcceEEEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           82 -TEVPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        82 -~~~~~lv~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                       -+.+|+|+|+++. ||.+.|+... .........+.|++.|+.|      +|||+||+|++   +..++..|++|||+|
T Consensus        97 ~f~DvYiV~elMet-DL~~iik~~~~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll---~n~~c~lKI~DFGLA  172 (359)
T KOG0660|consen   97 KFNDVYLVFELMET-DLHQIIKSQQDLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLL---LNADCDLKICDFGLA  172 (359)
T ss_pred             ccceeEEehhHHhh-HHHHHHHcCccccHHHHHHHHHHHHHhcchhhcccccccccchhhee---eccCCCEEeccccce
Confidence             2468999999955 9999999876 3555666678999999988      57999999999   888899999999999


Q ss_pred             hhh
Q 040049          154 KWR  156 (167)
Q Consensus       154 ~~~  156 (167)
                      +..
T Consensus       173 R~~  175 (359)
T KOG0660|consen  173 RYL  175 (359)
T ss_pred             eec
Confidence            955

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.88  E-value=4.3e-22  Score=144.81  Aligned_cols=138  Identities=17%  Similarity=0.146  Sum_probs=114.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|..++..++||||+++++++.+.+..++|+
T Consensus         1 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (331)
T cd05597           1 DDFEILKVIGRGAFGEVAVVKMKNTGQVYAMKILNKWEMLKRAETACFREERDVLVNGDRRWITNLHYAFQDENNLYLVM   80 (331)
T ss_pred             CCceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHhCCCCCCCceEEEEecCCeEEEEE
Confidence            4789999999999999999984 57889999987532   2334456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++....  .........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---l~~~~~~kl~Dfg~~~  150 (331)
T cd05597          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVL---LDKNGHIRLADFGSCL  150 (331)
T ss_pred             ecCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEE---ECCCCCEEEEECCcee
Confidence            9999999999997643  2344455567788888877      46899999999   7788899999999875

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=99.87  E-value=6.3e-22  Score=144.05  Aligned_cols=141  Identities=18%  Similarity=0.148  Sum_probs=116.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|++.+.||+|+||.||++.. .++..+++|.+... .......+.+|+++++.++||||+++++++.+.+..++++
T Consensus         3 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~   82 (333)
T cd06650           3 KDDDFEKISELGAGNGGVVFKVSHKPSGLIMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   82 (333)
T ss_pred             chhhhheeccccCCCCEEEEEEEECCCCcEEEEEEeecccCHHHHHHHHHHHHHHHHCCCCcccceeEEEEECCEEEEEE
Confidence            457899999999999999999985 46888899877643 2334467889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++..... +.........+++.++.+       +|+|+++.|++   +.....++++|||.+..
T Consensus        83 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nil---i~~~~~~kL~Dfg~~~~  153 (333)
T cd06650          83 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNIL---VNSRGEIKLCDFGVSGQ  153 (333)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCChhhEE---EcCCCCEEEeeCCcchh
Confidence            99999999999986543 344445556677777765       46799999999   77778899999998873

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=99.87  E-value=4.6e-22  Score=144.19  Aligned_cols=133  Identities=19%  Similarity=0.074  Sum_probs=110.2

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++.+.+...+..+++|||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~~~~~   80 (323)
T cd05571           1 KLLGKGTFGKVILVREKATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQNTRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCCCEEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999984 57899999987643   2234456788999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           96 NLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        96 ~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|.+.+..... ..........+++.++.+      +|+|+|+.||+   +..+..++++|||+++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIl---l~~~~~~kl~DfG~a~~  144 (323)
T cd05571          81 ELFFHLSRERVFSEDRARFYGAEIVSALGYLHSCDVVYRDLKLENLM---LDKDGHIKITDFGLCKE  144 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEE---ECCCCCEEEeeCCCCcc
Confidence            99999876543 344445556778877776      57899999999   78888999999999873

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.87  E-value=7.5e-22  Score=143.54  Aligned_cols=138  Identities=19%  Similarity=0.168  Sum_probs=113.6

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+..|..++..++|++|+++++++.+.+..|+||
T Consensus         1 d~y~i~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~l~~~~~~~~~~~lv~   80 (331)
T cd05624           1 DDFEIIKVIGRGAFGEVAVVKMKHTERIYAMKILNKWEMLKRAETACFREERNVLVNGDCQWITTLHYAFQDENYLYLVM   80 (331)
T ss_pred             CCceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCEEEEEE
Confidence            4789999999999999999984 47888999987532   2233445778889999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++.....  ........+.+++.++.+      +|+|+|+.|++   +.....++++|||+++
T Consensus        81 Ey~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nil---l~~~~~~kl~DfG~a~  150 (331)
T cd05624          81 DYYVGGDLLTLLSKFEDRLPEDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVL---LDMNGHIRLADFGSCL  150 (331)
T ss_pred             eCCCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEE---EcCCCCEEEEecccee
Confidence            99999999999986432  334445556677777776      56899999999   7788889999999876

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.87  E-value=3e-22  Score=147.96  Aligned_cols=137  Identities=19%  Similarity=0.116  Sum_probs=112.7

Q ss_pred             cceecccCceeEEEEE-eCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           19 NIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      .+.||+|.||+||-|. .++|+.||+|.+.+..  .+....+.+|+.+++.++||+|+.+.-+|++++.+++|||.+.| 
T Consensus       569 devLGSGQFG~VYgg~hRktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~l~HPGiV~le~M~ET~ervFVVMEKl~G-  647 (888)
T KOG4236|consen  569 DEVLGSGQFGTVYGGKHRKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQNLHHPGIVNLECMFETPERVFVVMEKLHG-  647 (888)
T ss_pred             HhhccCCcceeeecceecccCceeeeeeeecccCCCchHHHHHHHHHHHHhcCCCCeeEEEEeecCCceEEEEehhhcc-
Confidence            3789999999999998 5789999999887652  33446788999999999999999999999999999999999966 


Q ss_pred             CHHHHHhhc-Cc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           96 NLSDYLHEQ-NE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        96 ~L~~~i~~~-~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      |+.+.|-.. ..  +.-.+...+.||+.+|.|+      |.|+||+|+++......+.+|+||||+|+..
T Consensus       648 DMLEMILSsEkgRL~er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiI  717 (888)
T KOG4236|consen  648 DMLEMILSSEKGRLPERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARII  717 (888)
T ss_pred             hHHHHHHHhhcccchHHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeec
Confidence            555555433 22  3334445578898888875      6899999999887777889999999999954

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=7.2e-23  Score=151.24  Aligned_cols=139  Identities=19%  Similarity=0.261  Sum_probs=121.9

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ...|....+||+|+.|.||.+. ..+++.||+|.+........+-+++|+.+|+..+|+||+.+++.|...+.+|+||||
T Consensus       272 ~~~y~~~~kigqgaSG~vy~A~~~~~~~~VaiK~m~l~~Q~~keLilnEi~Vm~~~~H~NiVnfl~Sylv~deLWVVMEy  351 (550)
T KOG0578|consen  272 RSKYTDFKKIGQGATGGVYVARKISTKQEVAIKRMDLRKQPKKELLLNEILVMRDLHHPNIVNFLDSYLVGDELWVVMEY  351 (550)
T ss_pred             hhhhcchhhhccccccceeeeeeccCCceEEEEEEEeccCCchhhhHHHHHHHHhccchHHHHHHHHhcccceeEEEEee
Confidence            3578888999999999999998 568899999998877776778899999999999999999999999989999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+|.+.+......+........+++.||.+      +|+|+|.+||+   +..+..+|++|||+..
T Consensus       352 m~ggsLTDvVt~~~~~E~qIA~Icre~l~aL~fLH~~gIiHrDIKSDnIL---L~~~g~vKltDFGFca  417 (550)
T KOG0578|consen  352 MEGGSLTDVVTKTRMTEGQIAAICREILQGLKFLHARGIIHRDIKSDNIL---LTMDGSVKLTDFGFCA  417 (550)
T ss_pred             cCCCchhhhhhcccccHHHHHHHHHHHHHHHHHHHhcceeeeccccceeE---eccCCcEEEeeeeeee
Confidence            999999999988765555666666667777766      57999999999   8999999999999865

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=99.87  E-value=6.3e-22  Score=143.50  Aligned_cols=132  Identities=19%  Similarity=0.095  Sum_probs=110.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.||+|+||.||++.. .++..+|+|.+...   .......+.+|+.+++.++||||+++++.+...+..++|+||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (323)
T cd05595           1 KLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCFVMEYANGG   80 (323)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHhCCCCCCcceeeEEecCCEEEEEEeCCCCC
Confidence            3689999999999984 57899999987543   2334456778999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           96 NLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        96 ~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|...+..... .....+..+.+++.++.+      +|+|+|+.||+   +.++..++++|||+++
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kL~Dfg~~~  143 (323)
T cd05595          81 ELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLM---LDKDGHIKITDFGLCK  143 (323)
T ss_pred             cHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEE---EcCCCCEEecccHHhc
Confidence            99988876543 455566667788888877      46899999999   7888899999999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=99.87  E-value=4.9e-22  Score=145.32  Aligned_cols=139  Identities=22%  Similarity=0.207  Sum_probs=117.8

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+..|+.++..++|||++++++.+.+.+..++|+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (350)
T cd05573           1 DDFEVIKVIGRGAFGEVWLVRDKDTGQVYAMKVLRKSDMIKRNQIAHVRAERDILADADSPWIVKLYYSFQDEEHLYLVM   80 (350)
T ss_pred             CCceEEEEEEeCCcEEEEEEEECCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhcCCCCccchhhheecCCeEEEEE
Confidence            4789999999999999999995 47899999987543   2244566888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        81 e~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIl---l~~~~~~kL~Dfg~~~~  150 (350)
T cd05573          81 EYMPGGDLMNLLIRKDVFPEETARFYIAELVLALDSVHKLGFIHRDIKPDNIL---IDADGHIKLADFGLCKK  150 (350)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE---ECCCCCEEeecCCCCcc
Confidence            99999999999987632 445555667788888877      47899999999   88889999999999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.87  E-value=3.2e-22  Score=145.72  Aligned_cols=140  Identities=26%  Similarity=0.375  Sum_probs=110.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecC-
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLET-   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~-   82 (167)
                      ..++|.+.+.||+|+||.||++..      .++..+|+|.+.... ......+.+|+.++..+ +||||+++++.+... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (338)
T cd05102           5 PRDRLRLGKVLGHGAFGKVVEASAFGIDKKSSCNTVAVKMLKEGATASEHKALMSELKILIHIGNHLNVVNLLGACTKPN   84 (338)
T ss_pred             chhHceeeeEeccCCcceEEEEEEeccCCcccchhhheeccccccchHHHHHHHHHHHHHHHhccCcceeeEEeEecCCC
Confidence            457899999999999999999963      234679999876432 23446788999999999 899999999988765 


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc--------------------------------------------------------
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE--------------------------------------------------------  106 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~--------------------------------------------------------  106 (167)
                      +.++++|||+++|+|.+++.....                                                        
T Consensus        85 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (338)
T cd05102          85 GPLMVIVEFCKYGNLSNFLRAKREFFSPYREKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETD  164 (338)
T ss_pred             CceEEEEecCCCCcHHHHHHhcchhcccccccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhcc
Confidence            457899999999999999875321                                                        


Q ss_pred             -------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049          107 -------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       107 -------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                             ..........+++.|+.|      +|+|+|+.|++   +..+..++++|||+++
T Consensus       165 ~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDiKp~Nil---~~~~~~~kl~DfG~a~  222 (338)
T cd05102         165 DLWKSPLTMEDLICYSFQVARGMEFLASRKCIHRDLAARNIL---LSENNVVKICDFGLAR  222 (338)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCccceEE---EcCCCcEEEeeccccc
Confidence                   011122345678888877      46899999999   7778889999999987

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=99.87  E-value=1.5e-21  Score=139.36  Aligned_cols=140  Identities=23%  Similarity=0.281  Sum_probs=114.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+.... ......+.+|+.+++.++|||++++++++.+.+..++++
T Consensus         3 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (288)
T cd07871           3 KLETYVKLDKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKNLKHANIVTLHDIIHTERCLTLVF   82 (288)
T ss_pred             ccccceEeeEEecCCCEEEEEEEECCCCCEEEEEEecccccCCcchhHHHHHHHHHhCCCCCEeeEEEEEcCCCeEEEEE
Confidence            346799999999999999999984 578899999876432 233456788999999999999999999999988999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++ +|.+.+.....  +.........+++.|+.+      +|+|++++|++   +.....++++|||.++.
T Consensus        83 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil---~~~~~~~kl~DfG~~~~  152 (288)
T cd07871          83 EYLDS-DLKQYLDNCGNLMSMHNVKIFMFQLLRGLSYCHKRKILHRDLKPQNLL---INEKGELKLADFGLARA  152 (288)
T ss_pred             eCCCc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---ECCCCCEEECcCcceee
Confidence            99976 99998876543  334445556778888877      57899999999   77888999999998863

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.87  E-value=2.8e-23  Score=163.47  Aligned_cols=144  Identities=22%  Similarity=0.242  Sum_probs=123.0

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccC---CCcccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKV---VGKGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~---~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      ..++....++|.+++.||+|+||.|..++ ..+++.+|+|++..   .+..+...|..|-.+|..-+.++|++++-.|.+
T Consensus        67 v~~lrl~~~DfeilKvIGrGaFGEV~lVr~k~t~~VYAMK~lnK~eMlKr~~tA~F~EERDimv~~ns~Wiv~LhyAFQD  146 (1317)
T KOG0612|consen   67 VKELRLKAEDFEILKVIGRGAFGEVALVRHKSTEKVYAMKILNKWEMLKRAETACFREERDIMVFGNSEWIVQLHYAFQD  146 (1317)
T ss_pred             HHHHhCCHHhhHHHHHhcccccceeEEEEeeccccchhHHHhhHHHHhhchhHHHHHHHhHHHHcCCcHHHHHHHHHhcC
Confidence            45677788999999999999999999998 56899999998876   345566778888899999899999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCcchHhhHHH--H------HHHHcCchhhhhcccchhHHHHhhhccCCccccccchh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGF--I------LSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~--~------~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ..++|+||||++||||..++.+.. ..+..|..  +      +.-++.+.|+|||+||+|++   ++..+.++++|||-.
T Consensus       147 ~~~LYlVMdY~pGGDlltLlSk~~-~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvL---ld~~GHikLADFGsC  222 (1317)
T KOG0612|consen  147 ERYLYLVMDYMPGGDLLTLLSKFD-RLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVL---LDKSGHIKLADFGSC  222 (1317)
T ss_pred             ccceEEEEecccCchHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeE---ecccCcEeeccchhH
Confidence            999999999999999999999877 44555542  2      33355677899999999999   999999999999964

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=99.87  E-value=1.6e-21  Score=140.08  Aligned_cols=140  Identities=22%  Similarity=0.271  Sum_probs=115.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ......+.+|+.+++.++||||+++++++.+++..++|+
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~   82 (303)
T cd07869           3 KADSYEKLEKLGEGSYATVYKGKSKVNGKLVALKVIRLQEEEGTPFTAIREASLLKGLKHANIVLLHDIIHTKETLTLVF   82 (303)
T ss_pred             ccccceEeeeEEecCCEEEEEEEECCCCCEEEEEEeccccccccchhHHHHHHHHhhCCCCCcCeEEEEEecCCeEEEEE
Confidence            457899999999999999999995 478899999876432 223346778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||++ ++|.+.+.....  ........+.+++.|+.+      +|+|+|++||+   +.....++++|||.++.
T Consensus        83 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nil---l~~~~~~kl~Dfg~~~~  152 (303)
T cd07869          83 EYVH-TDLCQYMDKHPGGLHPENVKLFLFQLLRGLSYIHQRYILHRDLKPQNLL---ISDTGELKLADFGLARA  152 (303)
T ss_pred             ECCC-cCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEECCCCccee
Confidence            9996 488888876432  344455667788888877      57899999999   77788899999998863

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=99.87  E-value=8.9e-22  Score=143.01  Aligned_cols=139  Identities=22%  Similarity=0.190  Sum_probs=115.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+....   ......+..|+.++..++||||+++++++.+.+..++|+
T Consensus         1 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (330)
T cd05601           1 KDFDVKSLVGRGHFGEVQVVREKATGDIYAMKVMKKSVLLAQETVSFFEEERDILSISNSPWIPQLQYAFQDKDNLYLVM   80 (330)
T ss_pred             CCceEEEEEEeccCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceeeEEecCCeEEEEE
Confidence            4789999999999999999984 578999999876432   223456778899999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +.....++|+|||.+..
T Consensus        81 e~~~~~~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIl---l~~~~~~kL~Dfg~a~~  151 (330)
T cd05601          81 EYQPGGDLLSLLNRYEDQFDEDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVL---IDRTGHIKLADFGSAAR  151 (330)
T ss_pred             CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEcccCchHheE---ECCCCCEEeccCCCCeE
Confidence            99999999999987532  344455556777777776      57899999999   88888999999999863

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.87  E-value=1.1e-21  Score=146.13  Aligned_cols=142  Identities=20%  Similarity=0.233  Sum_probs=121.5

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .....|.+...||+|.|++|..+. ..++..||+|.+...  +...++.+.+|+.+|..+.||||++++++..++..+|+
T Consensus        53 ~~vg~y~i~~tig~g~f~~V~La~~~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~l~HPnIvkl~~v~~t~~~lyl  132 (596)
T KOG0586|consen   53 NSVGLYVIIKTIGKGNFAKVKLARHILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKSLNHPNIVKLFSVIETEATLYL  132 (596)
T ss_pred             ccccceeeeeeeccceeEEEEeeEecCCCceEEEEEehhcccChHHHHHHHHHHHHHHhcCCcceeeeeeeeeecceeEE
Confidence            455788999999999999999998 458999999998765  33445678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+.+|.+++++...+. ..........|++.+++|      +|+|||..|++   ++.+-..+|+|||++..
T Consensus       133 V~eya~~ge~~~yl~~~gr~~e~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNil---L~~~mnikIaDfgfS~~  204 (596)
T KOG0586|consen  133 VMEYASGGELFDYLVKHGRMKEKEARAKFRQIVSAVEYCHSKNIVHRDLKAENIL---LDENMNIKIADFGFSTF  204 (596)
T ss_pred             EEEeccCchhHHHHHhcccchhhhhhhhhHHHHHHHHHHhhcceeccccchhhcc---cccccceeeecccccee
Confidence            9999999999999998764 334555556677777777      57999999999   88888899999999863

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.87  E-value=1.9e-22  Score=151.56  Aligned_cols=148  Identities=23%  Similarity=0.317  Sum_probs=127.0

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ++++...+.+..+..+||-|.||.||.+.|+ ....+|||.++. +....+.|+.|+.+|+.++|||++++.|+|.....
T Consensus       259 ~DkWEmeRtdItMkhKLGGGQYGeVYeGvWKkyslTvAVKtLKE-DtMeveEFLkEAAvMKeikHpNLVqLLGVCT~EpP  337 (1157)
T KOG4278|consen  259 ADKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTHEPP  337 (1157)
T ss_pred             cchhhccchheeeeeccCCCcccceeeeeeeccceeeehhhhhh-cchhHHHHHHHHHHHHhhcCccHHHHhhhhccCCC
Confidence            4677788888899999999999999999864 578899998763 44567899999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||++||+..|+|.++++....   +......+..||..++.|      +|||+..-|++   +-.+..+|++|||++++
T Consensus       338 FYIiTEfM~yGNLLdYLRecnr~ev~avvLlyMAtQIsSaMeYLEkknFIHRDLAARNCL---VgEnhiVKvADFGLsRl  414 (1157)
T KOG4278|consen  338 FYIITEFMCYGNLLDYLRECNRSEVPAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL---VGENHIVKVADFGLSRL  414 (1157)
T ss_pred             eEEEEecccCccHHHHHHHhchhhcchhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhcc---ccccceEEeeccchhhh
Confidence            9999999999999999998764   233444556777777765      79999999999   88889999999999997


Q ss_pred             hh
Q 040049          156 RH  157 (167)
Q Consensus       156 ~~  157 (167)
                      +.
T Consensus       415 Mt  416 (1157)
T KOG4278|consen  415 MT  416 (1157)
T ss_pred             hc
Confidence            64

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.87  E-value=1.6e-22  Score=150.68  Aligned_cols=143  Identities=24%  Similarity=0.373  Sum_probs=118.5

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      .+++....++..+.+.||+|+||+||+|.+..  .||||.+...  .+...+.|.+|+.++++-+|.||+-+.|++..++
T Consensus       384 ~~~WeIp~~ev~l~~rIGsGsFGtV~Rg~whG--dVAVK~Lnv~~pt~~qlqaFKnEVa~lkkTRH~NIlLFMG~~~~p~  461 (678)
T KOG0193|consen  384 LEEWEIPPEEVLLGERIGSGSFGTVYRGRWHG--DVAVKLLNVDDPTPEQLQAFKNEVAVLKKTRHENILLFMGACMNPP  461 (678)
T ss_pred             ccccccCHHHhhccceeccccccceeeccccc--ceEEEEEecCCCCHHHHHHHHHHHHHHhhcchhhheeeehhhcCCc
Confidence            35666667788889999999999999999632  5899987654  4456788999999999999999999999997776


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcch--HhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDF--VKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~--~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      . .||+.||+|.+|...++...-.+  ........|+++|+.|      +|+|+|..|||   +.+++.++|+|||++.
T Consensus       462 ~-AIiTqwCeGsSLY~hlHv~etkfdm~~~idIAqQiaqGM~YLHAK~IIHrDLKSnNIF---l~~~~kVkIgDFGLat  536 (678)
T KOG0193|consen  462 L-AIITQWCEGSSLYTHLHVQETKFDMNTTIDIAQQIAQGMDYLHAKNIIHRDLKSNNIF---LHEDLKVKIGDFGLAT  536 (678)
T ss_pred             e-eeeehhccCchhhhhccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhhhhhccccceE---EccCCcEEEeccccee
Confidence            6 99999999999999999765322  3344456677888877      67999999999   8888999999999975

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=99.87  E-value=1.4e-21  Score=141.94  Aligned_cols=133  Identities=20%  Similarity=0.095  Sum_probs=110.7

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~Ey~~~g   80 (328)
T cd05593           1 KLLGKGTFGKVILVREKASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKNTRHPFLTSLKYSFQTKDRLCFVMEYVNGG   80 (328)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCcceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999984 57899999987543   2334567788999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           96 NLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        96 ~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|.+.+..... ........+.+++.++.++      |+|+|+.||+   +..+..++++|||.++.
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIl---l~~~~~~kL~DfG~~~~  144 (328)
T cd05593          81 ELFFHLSRERVFSEDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLM---LDKDGHIKITDFGLCKE  144 (328)
T ss_pred             CHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeE---ECCCCcEEEecCcCCcc
Confidence            99988876543 4445555677888888774      6899999999   78888999999998873

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=99.87  E-value=1.2e-21  Score=142.07  Aligned_cols=136  Identities=20%  Similarity=0.201  Sum_probs=111.6

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHH---hcCCCCceeeeeeeeecCCcceEE
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVIL---SQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~---~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      |.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|++++   +.++||||+++++++...+..++|
T Consensus         1 y~i~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~~~~~~~lv   80 (324)
T cd05589           1 FRCLAVLGRGHFGKVLLAEYKKTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQTEDHVCFV   80 (324)
T ss_pred             CeEEEEEeecCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEEcCCEEEEE
Confidence            56788999999999999984 57899999987643   223345666776655   466899999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||+++++|...+..........+..+.+++.++.+      +|+|+++.||+   +.++..++++|||.++
T Consensus        81 ~E~~~~~~L~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nil---l~~~~~~kL~Dfg~~~  149 (324)
T cd05589          81 MEYAAGGDLMMHIHTDVFSEPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLL---LDTEGFVKIADFGLCK  149 (324)
T ss_pred             EcCCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeE---ECCCCcEEeCcccCCc
Confidence            999999999988876554556666677788888877      46999999999   8888999999999876

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=99.86  E-value=1.3e-21  Score=141.25  Aligned_cols=131  Identities=21%  Similarity=0.218  Sum_probs=108.9

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..++||||+++++++...+..++++||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g~L   80 (312)
T cd05585           1 IGKGSFGKVMQVRKRDTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQVNCPFIVPLKFSFQSPEKLYLVLAFINGGEL   80 (312)
T ss_pred             CCcCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCcEeceeeEEecCCeEEEEEcCCCCCcH
Confidence            68999999999985 46889999987542   233456678899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+.+..... ........+.+++.++.+      +|+|+++.|++   +..+..++++|||+++.
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nil---i~~~~~~kl~Dfg~~~~  142 (312)
T cd05585          81 FHHLQREGRFDLSRARFYTAELLCALENLHKFNVIYRDLKPENIL---LDYQGHIALCDFGLCKL  142 (312)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeE---ECCCCcEEEEECccccc
Confidence            999976543 444455556778777777      57999999999   78888999999999874

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.86  E-value=8.1e-22  Score=145.60  Aligned_cols=140  Identities=25%  Similarity=0.361  Sum_probs=111.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||+|..      .++..+|+|.++... ....+.+.+|+.++..+ +||||+++++++...+
T Consensus        33 ~~~~~~~~~~LG~G~fG~V~~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l~~HpnIv~l~~~~~~~~  112 (375)
T cd05104          33 PRNRLSFGKTLGAGAFGKVVEATAYGLFKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHINIVNLLGACTVGG  112 (375)
T ss_pred             chHHeehhheecCCccceEEEEEEeccccCccceeEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcceeeeeeeeccCC
Confidence            355799999999999999999862      235689999876432 33456788999999999 7999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc---------------------------------------------------------
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE---------------------------------------------------------  106 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~---------------------------------------------------------  106 (167)
                      ..+++|||+++|+|.+++.....                                                         
T Consensus       113 ~~~lv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (375)
T cd05104         113 PTLVITEYCCYGDLLNFLRRKRDSFICPKHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSG  192 (375)
T ss_pred             cceeeehhccCCcHHHHHHhcccccccccccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccc
Confidence            99999999999999999975321                                                         


Q ss_pred             -------------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049          107 -------------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       107 -------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                                         .....+..+.+++.++.+      +|+|+|+.|++   +..+..++++|||+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil---l~~~~~~kl~DfG~a~  262 (375)
T cd05104         193 SYIDQDVTSEILEEDELALDTEDLLSFSYQVAKGMSFLASKNCIHRDLAARNIL---LTHGRITKICDFGLAR  262 (375)
T ss_pred             eecccccHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCchhhEE---EECCCcEEEecCccce
Confidence                               111223445677777776      57999999999   7778889999999886

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=99.86  E-value=2.8e-21  Score=137.79  Aligned_cols=137  Identities=21%  Similarity=0.158  Sum_probs=111.9

Q ss_pred             CcccceecccCceeEEEEE-eCCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           16 LNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      |...+.||+|+||.||++. ..+++.+|+|.+....   ......+.+|+.++..++|++++++.+.+.+.+..++++||
T Consensus         2 f~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~iv~~~~~~~~~~~~~lv~e~   81 (285)
T cd05631           2 FRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKRILEKVNSRFVVSLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCEEEEEEEEecCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHhcCCCcEEEEEEEEccCCeEEEEEEe
Confidence            6778999999999999998 4678999999875432   22234577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|+|.+.+....   ......+..+.+++.++.+      +|+|+++.|++   +.+...++++|||.+..
T Consensus        82 ~~~g~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil---l~~~~~~kl~Dfg~~~~  151 (285)
T cd05631          82 MNGGDLKFHIYNMGNPGFDEQRAIFYAAELCCGLEDLQRERIVYRDLKPENIL---LDDRGHIRISDLGLAVQ  151 (285)
T ss_pred             cCCCcHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEE---ECCCCCEEEeeCCCcEE
Confidence            99999988876532   2334455556778877776      57899999999   77888899999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.86  E-value=2.1e-21  Score=147.37  Aligned_cols=138  Identities=14%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             CCcccceecccCceeEEEEEe-CC-CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-AD-ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~-~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .|.+.+.+|+|++|.||.+.. .+ +..+++|.+..........+.+|+.+++.++||||+++++++...+..++||||+
T Consensus        68 ~y~~~~~lg~G~~g~vy~a~~~~~~~~~vv~K~~~~~~~~~~~~~~~E~~~l~~l~Hpniv~~~~~~~~~~~~~lv~E~~  147 (478)
T PTZ00267         68 MYVLTTLVGRNPTTAAFVATRGSDPKEKVVAKFVMLNDERQAAYARSELHCLAACDHFGIVKHFDDFKSDDKLLLIMEYG  147 (478)
T ss_pred             eEEEEEEEEeCCCcEEEEEEEcCCCCeEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEECCEEEEEEECC
Confidence            388999999999999999984 34 6778888765555555566788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+.+.+..     ......+..+.+++.++.+      +|+|+|+.||+   +.....++++|||+++.
T Consensus       148 ~gg~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIl---l~~~~~~kL~DFgla~~  218 (478)
T PTZ00267        148 SGGDLNKQIKQRLKEHLPFQEYEVGLLFYQIVLALDEVHSRKMMHRDLKSANIF---LMPTGIIKLGDFGFSKQ  218 (478)
T ss_pred             CCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEE---ECCCCcEEEEeCcCcee
Confidence            9999998886531     1233344456677777776      57999999999   78888999999999874

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=99.86  E-value=2.5e-21  Score=140.37  Aligned_cols=137  Identities=19%  Similarity=0.183  Sum_probs=112.9

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCC-CceeeeeeeeecCCcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINY-RNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h-~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +|.+.+.||+|+||.||+|.. .+++.+|+|.+...   .....+.+..|.+++..+.| ++++.+++++...+..|+||
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (324)
T cd05587           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLYFVM   80 (324)
T ss_pred             CceEEEEEeeccCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhcCCCCceeeeEEEEEcCCEEEEEE
Confidence            578899999999999999984 46789999987542   23345667889999998875 56888999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+.+..... ........+.+++.++.+      +|+|++++||+   +..+..++++|||+++
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nil---l~~~~~~kL~Dfg~~~  149 (324)
T cd05587          81 EYVNGGDLMYHIQQVGKFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVM---LDAEGHIKIADFGMCK  149 (324)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeE---EcCCCCEEEeecCcce
Confidence            99999999999876543 445556667788888877      57899999999   7888899999999876

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.86  E-value=7.1e-22  Score=152.08  Aligned_cols=139  Identities=18%  Similarity=0.246  Sum_probs=110.9

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeee-ec---C---C
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCC-LE---T---E   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~-~~---~---~   83 (167)
                      .-++.+.+.|.+|+|+.||.+... .+..+|+|++-..+....+.+.+|+.+|+.|+ |+|||.+++.. ..   .   -
T Consensus        36 ~~~v~V~~vLAEGGFa~VYla~~~~~~~~~AlKrm~~~de~~L~~v~~EI~~MK~L~gh~nIV~yidss~~~~~~~~~~~  115 (738)
T KOG1989|consen   36 SHRVTVEKVLAEGGFAQVYLAQDVKGGKKYALKRMYVNDEEALNAVKREIDIMKLLSGHKNIVSYIDSSAINRSSNNGVW  115 (738)
T ss_pred             CEEEEEEEEEccCCcEEEEEEEecCCCceeeeeeeecCCHHHHHHHHHHHHHHHHhcCCCceeeEeccccccccCCCcee
Confidence            346678899999999999999954 44999999876667778889999999999996 99999999943 21   1   2


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhccCCccccccch
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      .++|+||||.||.|-+++.++..   ........+.+++.|+++        +|||+|.+|+|   +..+...||||||-
T Consensus       116 EvllLmEyC~gg~Lvd~mn~Rlq~~lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvL---ls~~g~~KLCDFGS  192 (738)
T KOG1989|consen  116 EVLLLMEYCKGGSLVDFMNTRLQTRLTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVL---LSADGNYKLCDFGS  192 (738)
T ss_pred             EEEeehhhccCCcHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheE---EcCCCCEEeCcccc
Confidence            46799999999999999997643   223333444555666554        78999999999   88888999999998


Q ss_pred             hh
Q 040049          153 EK  154 (167)
Q Consensus       153 ~~  154 (167)
                      |-
T Consensus       193 at  194 (738)
T KOG1989|consen  193 AT  194 (738)
T ss_pred             cc
Confidence            76

>PHA02988 hypothetical protein; Provisional

Probab=99.86  E-value=5.3e-21  Score=136.33  Aligned_cols=132  Identities=20%  Similarity=0.327  Sum_probs=108.5

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCccc---HHHHHHHHHHHhcCCCCceeeeeeeeec----CCcceEEEecC
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGK---LDEFINKVVILSQINYRNVVKLLGCCLE----TEVPLLVYEYI   92 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~---~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~~lv~e~~   92 (167)
                      ..+++|+++.||+|.. +|+.+|+|.+.......   .+.+.+|+.++..++||||+++++++.+    ....++++||+
T Consensus        26 ~~i~~g~~~~v~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~  104 (283)
T PHA02988         26 VLIKENDQNSIYKGIF-NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRRIDSNNILKIYGFIIDIVDDLPRLSLILEYC  104 (283)
T ss_pred             eEEeeCCceEEEEEEE-CCEEEEEEeccccccccHHHHHHHHHHHHHHHhcCCCCEEEEeeeEEecccCCCceEEEEEeC
Confidence            5799999999999987 68899999886543332   4667899999999999999999999876    35688999999


Q ss_pred             CCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh-------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL-------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~-------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+++.+... .....+..+.+++.++.++       |+|+++.|++   +.++..++++|||.++.
T Consensus       105 ~~g~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nil---l~~~~~~kl~dfg~~~~  172 (283)
T PHA02988        105 TRGYLREVLDKEKDLSFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFL---VTENYKLKIICHGLEKI  172 (283)
T ss_pred             CCCcHHHHHhhCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEE---ECCCCcEEEcccchHhh
Confidence            99999999986543 4444555667777777664       6889999999   88889999999999873

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=99.86  E-value=1.9e-22  Score=142.36  Aligned_cols=141  Identities=21%  Similarity=0.222  Sum_probs=108.9

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC---C--cceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET---E--VPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~---~--~~~l   87 (167)
                      -.|...+++|+|+||.||++. ..+++.+|+|+....+.    .--+|+.+|+.++||||+++.-+|...   +  +..+
T Consensus        24 i~~~~~~liG~GsFg~Vyq~~~~e~~~~vAIKKv~~d~r----~knrEl~im~~l~HpNIV~L~~~f~~~~~~d~~~lnl   99 (364)
T KOG0658|consen   24 ISYEAVRLIGSGSFGVVYQAKLRETEEEVAIKKVLQDKR----YKNRELQIMRKLDHPNIVRLLYFFSSSTESDEVYLNL   99 (364)
T ss_pred             EEEEeeEEEeecccceEEEEEEcCCCceeEEEEecCCCC----cCcHHHHHHHhcCCcCeeeEEEEEEecCCCchhHHHH
Confidence            357778999999999999999 55789999998754432    223689999999999999998877543   2  3458


Q ss_pred             EEecCCCCCHHHHHhh-----cCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHE-----QNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~-----~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      |+||+|. +|.+.++.     ...+......+..|+..|++|      .|||+||.|++   ++.. +..||||||-|+ 
T Consensus       100 VleymP~-tL~~~~r~~~~~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlL---vD~~tg~LKicDFGSAK-  174 (364)
T KOG0658|consen  100 VLEYMPE-TLYRVIRHYTRANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLL---VDPDTGVLKICDFGSAK-  174 (364)
T ss_pred             HHHhchH-HHHHHHHHHhhcCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEE---EcCCCCeEEeccCCcce-
Confidence            9999988 99999994     233444455567777777777      47999999999   7766 788999999999 


Q ss_pred             hhhhhhhhhc
Q 040049          156 RHTVLKRKEN  165 (167)
Q Consensus       156 ~~~i~hr~~~  165 (167)
                        .++.+-+|
T Consensus       175 --~L~~~epn  182 (364)
T KOG0658|consen  175 --VLVKGEPN  182 (364)
T ss_pred             --eeccCCCc
Confidence              45554444

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.86  E-value=5.1e-21  Score=135.01  Aligned_cols=141  Identities=19%  Similarity=0.206  Sum_probs=117.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+..........+.+|+.+++.++|||++++++.+...+..++++|
T Consensus         7 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~~~~~~~~~~e~~~l~~~~h~~ii~~~~~~~~~~~~~iv~e   86 (267)
T cd06646           7 PQHDYELIQRVGSGTYGDVYKARNLHTGELAAVKIIKLEPGDDFSLIQQEIFMVKECKHCNIVAYFGSYLSREKLWICME   86 (267)
T ss_pred             chhhcchhheeecCCCeEEEEEEECCCCeEEEEEEEecCccchHHHHHHHHHHHHhcCCCCeeeeeEEEEeCCEEEEEEe
Confidence            346799999999999999999984 5788999998865554555678889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++..... +.........+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil---l~~~~~~~l~dfg~~~~  155 (267)
T cd06646          87 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLAYLHSKGKMHRDIKGANIL---LTDNGDVKLADFGVAAK  155 (267)
T ss_pred             CCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---ECCCCCEEECcCcccee
Confidence            9999999998876543 334445556777777766      57899999999   77788899999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.86  E-value=4e-22  Score=147.00  Aligned_cols=141  Identities=18%  Similarity=0.142  Sum_probs=121.1

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +..=|.+.+.||+|.|+.|-.++ .-+|..||||.+...+-  -....+++|++.|+.++||||++++++..++..+|++
T Consensus        16 IAGLYDLekTlG~GHFAVVKLArHVFTGekVAVKviDKTKlD~~st~hlfqEVRCMKLVQHpNiVRLYEViDTQTKlyLi   95 (864)
T KOG4717|consen   16 IAGLYDLEKTLGRGHFAVVKLARHVFTGEKVAVKVIDKTKLDTLSTGHLFQEVRCMKLVQHPNIVRLYEVIDTQTKLYLI   95 (864)
T ss_pred             eeeeehhhhhhcCCceehhhhhhhhcccceeEEEEecccccchhhhhHHHHHHHHHHHhcCcCeeeeeehhcccceEEEE
Confidence            34568889999999999999988 45899999999876643  3456789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.-.+|+|+++|-+...  +..++..+.-||+.++.|      +|+|+||+|+.+  +-+-+.+|++|||++.
T Consensus        96 LELGD~GDl~DyImKHe~Gl~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVF--FEKlGlVKLTDFGFSN  167 (864)
T KOG4717|consen   96 LELGDGGDLFDYIMKHEEGLNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVF--FEKLGLVKLTDFGFSN  167 (864)
T ss_pred             EEecCCchHHHHHHhhhccccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEE--eeecCceEeeeccccc
Confidence            999999999999987643  677888889999888877      679999999972  3456799999999976

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.86  E-value=5.2e-22  Score=151.66  Aligned_cols=140  Identities=24%  Similarity=0.417  Sum_probs=116.4

Q ss_pred             hhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..+...+.+.||.|.||.|++|+++    ....||+|-++.. .++....|+.|+.+|.+++||||++|.|+......+.
T Consensus       627 d~s~i~Ie~VIGaGEFGEVc~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQFdHPNIIrLEGVVTks~PvM  706 (996)
T KOG0196|consen  627 DPSCVKIEKVIGAGEFGEVCSGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIRLEGVVTKSKPVM  706 (996)
T ss_pred             ChhheEEEEEEecccccceecccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhcccCCCCcEEEEEEEEecCceeE
Confidence            3456678899999999999999854    2357899987654 4556778999999999999999999999999899999


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHh--hHHHHHHHHcCch------hhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVK--DVGFILSRRGGIP------RLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~--~~~~~~~i~~~l~------~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+.||+++|+|..++++...++..  ..-+..+|+.|+.      |+||||..-|||   +..++.+|++|||++|
T Consensus       707 IiTEyMENGsLDsFLR~~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNIL---VNsnLvCKVsDFGLSR  779 (996)
T KOG0196|consen  707 IITEYMENGSLDSFLRQNDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNIL---VNSNLVCKVSDFGLSR  779 (996)
T ss_pred             EEhhhhhCCcHHHHHhhcCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhhee---eccceEEEecccccee
Confidence            999999999999999987654322  2334455666654      479999999999   8999999999999998

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.86  E-value=3.5e-21  Score=135.96  Aligned_cols=140  Identities=21%  Similarity=0.353  Sum_probs=115.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++...    .+..+++|.++... ......+.+|+..+..++|||++++++++..++..+
T Consensus         3 ~~~~~~~~~~ig~G~fg~V~~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~   82 (266)
T cd05064           3 DNKSIKIERILGTGRFGELCRGCLKLPSKRELPVAIHTLRAGCSDKQRRGFLAEALTLGQFDHSNIVRLEGVITRGNTMM   82 (266)
T ss_pred             chHHeEEeeeecccCCCeEEEEEEecCCCceeeEEEEecCCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEecCCCcE
Confidence            4567899999999999999999742    35689999876542 233456889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||+++|+|.+++.....  .....+..+.+++.+++++      |+|+++.|++   +..+..++++|||.+.
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~i~~al~~lH~~~iiH~dikp~nil---i~~~~~~~l~dfg~~~  155 (266)
T cd05064          83 IVTEYMSNGALDSFLRKHEGQLVAGQLMGMLPGLASGMKYLSEMGYVHKGLAAHKVL---VNSDLVCKISGFRRLQ  155 (266)
T ss_pred             EEEEeCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeeccccHhhEE---EcCCCcEEECCCcccc
Confidence            99999999999999886432  3444556677788888774      7899999999   7888889999999765

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.86  E-value=6.3e-22  Score=128.49  Aligned_cols=137  Identities=22%  Similarity=0.314  Sum_probs=117.0

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|...++||+|.+|+|++++ +.+++.||+|.++..  +++......+|+-+++.++|.||+++++....+..+-+|+||
T Consensus         3 ~ydkmekigegtygtvfkarn~~t~eivalkrvrlddddegvpssalreicllkelkhknivrl~dvlhsdkkltlvfe~   82 (292)
T KOG0662|consen    3 KYDKMEKIGEGTYGTVFKARNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFEF   82 (292)
T ss_pred             chHHHHhhcCCcceeeEecccCCccceEEEEEEeccCCCCCCcHHHHHHHHHHHHhhhcceeehhhhhccCceeEEeHHH
Confidence            46677899999999999999 678999999986554  445567789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |.. +|..+......  ......+.++|.+.|+.+      +|+|+||.|.+   +..++..|++|||+|+.
T Consensus        83 cdq-dlkkyfdslng~~d~~~~rsfmlqllrgl~fchshnvlhrdlkpqnll---in~ngelkladfglara  150 (292)
T KOG0662|consen   83 CDQ-DLKKYFDSLNGDLDPEIVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLL---INRNGELKLADFGLARA  150 (292)
T ss_pred             hhH-HHHHHHHhcCCcCCHHHHHHHHHHHHhhhhhhhhhhhhhccCCcceEE---eccCCcEEecccchhhh
Confidence            976 88777766543  445566678888888876      68999999999   89999999999999984

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=99.86  E-value=4.1e-21  Score=139.59  Aligned_cols=132  Identities=19%  Similarity=0.151  Sum_probs=109.3

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.++..   .......+..|..++..+ +||||+++++++.+.+..+++|||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~~~hp~Iv~~~~~~~~~~~~~lv~e~~~~   80 (329)
T cd05588           1 RVIGRGSYAKVLLVELKKTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETASNHPFLVGLHSCFQTESRLFFVIEFVSG   80 (329)
T ss_pred             CeEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCCCCceEEEEEcCCEEEEEEeCCCC
Confidence            3689999999999984 57889999987643   223445678889988888 699999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... .....+..+.+++.++.+      +|+|+++.|++   +.....++|+|||+++
T Consensus        81 g~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---i~~~~~~kL~Dfg~~~  144 (329)
T cd05588          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNFLHERGIIYRDLKLDNVL---LDAEGHIKLTDYGMCK  144 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeE---ECCCCCEEECcCcccc
Confidence            999988876543 455566667788888877      57899999999   7888899999999886

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.86  E-value=2.4e-21  Score=143.99  Aligned_cols=96  Identities=28%  Similarity=0.464  Sum_probs=79.7

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-C-----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCC-CCceeeeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-A-----DERIVAVKKSKVVG-KGKLDEFINKVVILSQIN-YRNVVKLLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~-----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~   80 (167)
                      +....++|.+.+.||+|+||.||+|.. .     .+..+|+|.+.... ....+.+.+|+.+++.+. ||||+++++++.
T Consensus        32 ~~~~~~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l~~HpnIv~l~~~~~  111 (400)
T cd05105          32 WEFPRDGLVLGRILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLNIVNLLGACT  111 (400)
T ss_pred             eeccccceehhheecCCCCceEEEEEEcccCCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhcCCCCCeeeEEEEEc
Confidence            344567899999999999999999973 1     23469999886432 334567899999999996 999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhc
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQ  104 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~  104 (167)
                      ..+..++|+|||++|+|.+++...
T Consensus       112 ~~~~~~lv~Ey~~~g~L~~~l~~~  135 (400)
T cd05105         112 KSGPIYIITEYCFYGDLVNYLHKN  135 (400)
T ss_pred             cCCceEEEEEecCCCcHHHHHHHh
Confidence            999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=99.86  E-value=3.8e-21  Score=139.40  Aligned_cols=132  Identities=21%  Similarity=0.167  Sum_probs=108.1

Q ss_pred             ceecccCceeEEEEEe----CCCcEEEEEeccCC----CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGML----ADERIVAVKKSKVV----GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~----~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.||+|+||.||++..    .+++.+|+|.+...    .......+..|+.+++.++||||+++++.+..++..|+++||
T Consensus         2 ~~lg~G~~g~V~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~l~hp~iv~~~~~~~~~~~~~lv~e~   81 (323)
T cd05584           2 KVLGKGGYGKVFQVRKVTGADTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEAVKHPFIVDLIYAFQTGGKLYLILEY   81 (323)
T ss_pred             ceeeecCCeEEEEEEEcccCCCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHhCCCCchhceeeEEecCCeEEEEEeC
Confidence            6799999999999974    25788999987542    223345677899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+.+..... ........+.+++.++.+      +|+|+++.|++   +..+..++|+|||+++
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~~~  148 (323)
T cd05584          82 LSGGELFMHLEREGIFMEDTACFYLSEISLALEHLHQQGIIYRDLKPENIL---LDAQGHVKLTDFGLCK  148 (323)
T ss_pred             CCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---ECCCCCEEEeeCcCCe
Confidence            999999999876553 333444456677777776      57999999999   7888899999999876

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.86  E-value=4.3e-21  Score=139.63  Aligned_cols=138  Identities=16%  Similarity=0.150  Sum_probs=111.8

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+..|+.++..++|++|+++++.+.+.+..++|+
T Consensus         1 ~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (332)
T cd05623           1 EDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDNQWITTLHYAFQDENNLYLVM   80 (332)
T ss_pred             CCceEEEEEEeCCCeEEEEEEECCCCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCEEEEEE
Confidence            4789999999999999999985 46788999987532   2223345778889999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++.+...  +.......+.+++.++.+      +|+|+|+.|++   +..+..++++|||.+.
T Consensus        81 ey~~~g~L~~~l~~~~~~l~~~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nil---i~~~~~~kL~DfG~a~  150 (332)
T cd05623          81 DYYVGGDLLTLLSKFEDRLPEDMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL---MDMNGHIRLADFGSCL  150 (332)
T ss_pred             eccCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEE---ECCCCCEEEeecchhe
Confidence            99999999999986432  333444455666666665      67999999999   7788899999999875

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=99.86  E-value=3.1e-21  Score=139.93  Aligned_cols=132  Identities=20%  Similarity=0.093  Sum_probs=108.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.||+|+||.||++.. .++..+|+|.+...   .......+..|+++++.++||||+++.+.+...+..++||||+++|
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~~   80 (325)
T cd05594           1 KLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCFVMEYANGG   80 (325)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCCCceEEEEEcCCEEEEEEeCCCCC
Confidence            3689999999999984 57899999987643   2233456778999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCc-chHhhHHHHHHHHcCchhh-------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           96 NLSDYLHEQNE-DFVKDVGFILSRRGGIPRL-------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        96 ~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~-------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.+.+..... .....+....+++.++.++       |+|+|+.||+   +..+..++|+|||.++
T Consensus        81 ~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIl---l~~~~~~kL~Dfg~~~  144 (325)
T cd05594          81 ELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLM---LDKDGHIKITDFGLCK  144 (325)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEE---ECCCCCEEEecCCCCe
Confidence            99988876543 4445555667787777665       5789999999   8888899999999876

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.86  E-value=3.4e-21  Score=152.59  Aligned_cols=140  Identities=25%  Similarity=0.438  Sum_probs=116.5

Q ss_pred             hhcCCcccceecccCceeEEEEEeC--CC----cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA--DE----RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~----~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..+.....+.||+|.||.||.|...  .+    ..||+|.+... +..+...|++|+.+|+.++||||++++|++.+...
T Consensus       690 ~~~~v~l~~~lG~G~FG~VY~g~~~~~~~~~~~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~f~HpNiv~liGv~l~~~~  769 (1025)
T KOG1095|consen  690 PRKNVTLLRVLGKGAFGEVYEGTYSDVPGSVSPIQVAVKSLKRLSSEQEVSDFLKEALLMSKFDHPNIVSLIGVCLDSGP  769 (1025)
T ss_pred             ChhheEeeeeeccccccceEEEEEecCCCCccceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCcceeeEEEeecCCCC
Confidence            3456677889999999999999843  23    34888876544 55677889999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc----ch----HhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE----DF----VKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~----~~----~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      .++++||+++|||..+|++.+.    +.    ..-....+++|+|+.|      +|||+..-|+|   +.....+||.||
T Consensus       770 ~~i~leyM~gGDL~sflr~~r~~~~~~~~L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCL---L~~~r~VKIaDF  846 (1025)
T KOG1095|consen  770 PLILLEYMEGGDLLSFLRESRPAPFQPSNLSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCL---LDERRVVKIADF  846 (1025)
T ss_pred             cEEEehhcccCcHHHHHHhcccccCCCCCCCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhhee---ecccCcEEEccc
Confidence            9999999999999999998742    11    1233456778888877      69999999999   888899999999


Q ss_pred             chhh
Q 040049          151 EEEK  154 (167)
Q Consensus       151 ~~~~  154 (167)
                      |+|+
T Consensus       847 GlAr  850 (1025)
T KOG1095|consen  847 GLAR  850 (1025)
T ss_pred             chhH
Confidence            9999

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=99.86  E-value=5.5e-21  Score=138.97  Aligned_cols=138  Identities=15%  Similarity=0.094  Sum_probs=112.6

Q ss_pred             CCcccceecccCceeEEEEEe----CCCcEEEEEeccCC----CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcc
Q 040049           15 HLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVV----GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~----~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~   85 (167)
                      +|.+.+.||+|+||.||++..    .++..+|+|.+...    .....+.+..|+.++..+ +||+|+++++++...+..
T Consensus         1 ~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (332)
T cd05614           1 NFELLKVLGTGAYGKVFLVRKVTGHDTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHVRQSPFLVTLHYAFQTEAKL   80 (332)
T ss_pred             CceEEEEEeecCCEEEEEEEEcccCCCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhccCCCCcccEEEEEecCCEE
Confidence            488899999999999999874    25788999987532    223345677899999999 489999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++|+|.+.+..... ........+.+++.++.+      +|+|+|+.||+   +..+..++|+|||+++.
T Consensus        81 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil---i~~~~~~kl~DfG~~~~  154 (332)
T cd05614          81 HLILDYVSGGEMFTHLYQRDNFSEDEVRFYSGEIILALEHLHKLGIVYRDIKLENIL---LDSEGHVVLTDFGLSKE  154 (332)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeE---ECCCCCEEEeeCcCCcc
Confidence            999999999999999876543 444455556678888777      47999999999   78888999999999873

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.86  E-value=5.8e-21  Score=134.01  Aligned_cols=139  Identities=20%  Similarity=0.297  Sum_probs=114.3

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|+||.||++...++..+++|.+... ......+.+|+.+++.++|||++++++++...+..++++||+
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~a~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~iv~e~~   81 (256)
T cd05114           3 PSELTFMKELGSGQFGVVHLGKWRAQIKVAIKAINEG-AMSEEDFIEEAKVMMKLSHPKLVQLYGVCTQQKPLYIVTEFM   81 (256)
T ss_pred             HHHcEEeeEecCCcCceEEEEEeccCceEEEEecccC-CccHHHHHHHHHHHHHCCCCCceeEEEEEccCCCEEEEEEcC
Confidence            3568888999999999999998767778999987533 233467888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+.+.....  .....+....+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~---i~~~~~~kl~d~g~~~~  149 (256)
T cd05114          82 ENGCLLNYLRQRQGKLSKDMLLSMCQDVCEGMEYLERNSFIHRDLAARNCL---VSSTGVVKVSDFGMTRY  149 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcceEE---EcCCCeEEECCCCCccc
Confidence            99999999875432  334445556677777766      57899999999   77888899999998763

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=99.85  E-value=3.9e-21  Score=136.96  Aligned_cols=139  Identities=22%  Similarity=0.212  Sum_probs=112.6

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .....+.+.+|+.+++.++||||+++++++...+..++|+|
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (287)
T cd07848           1 NKFEVLGVVGEGAYGVVLKCRHKETKEIVAIKKFKDSEENEEVKETTLRELKMLRTLKQENIVELKEAFRRRGKLYLVFE   80 (287)
T ss_pred             CCceEEEEecccCCEEEEEEEECCCCcEEEEEEEecccccccchhhHHHHHHHHHhCCCccccchhhhEecCCEEEEEEe
Confidence            4789999999999999999995 46889999987543  23345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++++++..+..... ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil---l~~~~~~kl~Dfg~~~~  149 (287)
T cd07848          81 YVEKNMLELLEEMPNGVPPEKVRSYIYQLIKAIHWCHKNDIVHRDIKPENLL---ISHNDVLKLCDFGFARN  149 (287)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCcEEEeeccCccc
Confidence            999876655443222 2344455567788888877      46899999999   78888999999999874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.85  E-value=1e-20  Score=135.69  Aligned_cols=141  Identities=22%  Similarity=0.241  Sum_probs=117.8

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ...++|.+.+.||+|++|.||++.. .+++.+++|.+........+.+.+|+.+++.++|||++++++.+...+..++++
T Consensus        16 ~~~~~y~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~   95 (297)
T cd06656          16 DPKKKYTRFEKIGQGASGTVYTAIDIATGQEVAIKQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   95 (297)
T ss_pred             ChhhhceeeeeeccCCCeEEEEEEECCCCCEEEEEEEecCccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCEEEEee
Confidence            3457899999999999999999984 578999999886655555677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++.+...........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        96 e~~~~~~L~~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nil---i~~~~~~~l~Dfg~~~  163 (297)
T cd06656          96 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALDFLHSNQVIHRDIKSDNIL---LGMDGSVKLTDFGFCA  163 (297)
T ss_pred             cccCCCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEECcCccce
Confidence            99999999999876543444444455666666655      57999999999   7788889999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=99.85  E-value=7e-21  Score=138.38  Aligned_cols=133  Identities=21%  Similarity=0.165  Sum_probs=108.5

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+..|+.++..+ +||||+++++++.+.+..++|+||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~E~~~~   80 (329)
T cd05618           1 RVIGRGSYAKVLLVRLKKTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLFFVIEYVNG   80 (329)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhcCCCCcCCceeeEEEeCCEEEEEEeCCCC
Confidence            4689999999999984 57889999987643   233445677888888776 799999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|...+..... +....+..+.+++.++.+      +|+|+|+.|++   +..+..++|+|||+++.
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nil---i~~~~~~kL~DfG~~~~  145 (329)
T cd05618          81 GDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL---LDSEGHIKLTDYGMCKE  145 (329)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEE---ECCCCCEEEeeCCcccc
Confidence            999988876543 444555566778888776      57999999999   88888999999998863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.85  E-value=3.9e-22  Score=150.75  Aligned_cols=135  Identities=24%  Similarity=0.327  Sum_probs=107.8

Q ss_pred             cccceecccCceeEEEEE-eCCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC------cceEE
Q 040049           17 NVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE------VPLLV   88 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~------~~~lv   88 (167)
                      ..-+.||+|+||.||+++ ..+|+.+|+|.++.. ....++.+.+|++++++++|||||++++.-++..      ...++
T Consensus        16 ~~~e~LG~Ga~g~V~rgrnketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLnh~NIVk~f~iee~~~~~~~~~~~vlv   95 (732)
T KOG4250|consen   16 EMDERLGKGAFGNVYRGRNKETGRLVAVKTFNKESSLRPRERWCREIEILKKLNHPNIVKLFDIEETKFLGLVTRLPVLV   95 (732)
T ss_pred             eehhhhcCCccceeeeecccccccchhHHhhhhhcccchHHHHHHHHHHHHHcCchhhhhhcccCCccccCcccccceEE
Confidence            445789999999999999 678999999987653 3456788999999999999999999999876654      36799


Q ss_pred             EecCCCCCHHHHHhhcCcchHhhHHH----HHHHHcCchh------hhhcccchhHHHHhhhcc----CCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNEDFVKDVGF----ILSRRGGIPR------LKRKKKKNKIWKQQLLKG----LAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~~~~~~~~~----~~~i~~~l~~------~h~~~~~~~~~~~~~~~~----~~~~l~df~~~~  154 (167)
                      ||||+||||...+.+..+...++...    ...++.|+.+      +|||+||+||+   +..+    ...|++|||.||
T Consensus        96 mEyC~gGsL~~~L~~PEN~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIv---l~~Gedgq~IyKLtDfG~Ar  172 (732)
T KOG4250|consen   96 MEYCSGGSLRKVLNSPENAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIV---LQIGEDGQSIYKLTDFGAAR  172 (732)
T ss_pred             EeecCCCcHHHHhcCcccccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEE---EeecCCCceEEeeecccccc
Confidence            99999999999999765433333333    3445566666      68999999998   5443    345999999998

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=99.85  E-value=6.2e-21  Score=137.98  Aligned_cols=133  Identities=20%  Similarity=0.114  Sum_probs=109.4

Q ss_pred             ceecccCceeEEEEEe----CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           20 IVLGQGGQGTVHKGML----ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      +.||+|+||.||++..    .+++.+|+|.+....  ......+..|+.+++.++||||+++++.+.+.+..|+|+||++
T Consensus         2 ~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e~~~   81 (318)
T cd05582           2 KVLGQGSFGKVFLVRKITGPDAGQLYAMKVLKKATLKVRDRVRTKMERDILAEVNHPFIVKLHYAFQTEGKLYLILDFLR   81 (318)
T ss_pred             ceeeeCCCEEEEEEEEeccCCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhCCCCCcccEEEEEEcCCEEEEEEcCCC
Confidence            5799999999999873    357899999876432  2234557789999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           94 NGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|+|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        82 ~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kL~Dfg~~~~  147 (318)
T cd05582          82 GGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENIL---LDEEGHIKLTDFGLSKE  147 (318)
T ss_pred             CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHeE---ECCCCcEEEeeccCCcc
Confidence            9999999876543 444555667788888877      47899999999   78888999999998873

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.85  E-value=8.9e-21  Score=136.61  Aligned_cols=139  Identities=19%  Similarity=0.157  Sum_probs=114.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|+||.||++.. .++..+++|.+... .......+.+|++++..++||||+++++.+..++..++++||
T Consensus         1 ~~~~~~~~lg~G~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~ey   80 (308)
T cd06615           1 DDFEKLGELGAGNGGVVTKVLHRPSGLIMARKLIHLEIKPAIRNQIIRELKVLHECNSPYIVGFYGAFYSDGEISICMEH   80 (308)
T ss_pred             CCceEEeeccCCCCeEEEEEEEcCCCeEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCEEEEEeec
Confidence            4689999999999999999984 57888898887543 233445688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh-------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL-------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~-------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++..... +.......+.+++.++.|+       |+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~~  149 (308)
T cd06615          81 MDGGSLDQVLKKAGRIPENILGKISIAVLRGLTYLREKHKIMHRDVKPSNIL---VNSRGEIKLCDFGVSGQ  149 (308)
T ss_pred             cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEEECCCChHHEE---EecCCcEEEccCCCccc
Confidence            999999999986543 3344445567777777664       5789999999   77888899999998763

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=99.85  E-value=1.7e-23  Score=141.43  Aligned_cols=142  Identities=18%  Similarity=0.203  Sum_probs=121.0

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .++|++.+.||+|.|+.|+++. ..+|+.+++|.+...  ...+.+.+.+|+++.+.++||||+++.+......+.|+|+
T Consensus        10 ~d~y~l~e~igkG~FSvVrRc~~~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~LqHP~IvrL~~ti~~~~~~ylvF   89 (355)
T KOG0033|consen   10 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLVF   89 (355)
T ss_pred             chhhhHHHHHccCchHHHHHHHhccchHHHHHHHhhhhhhccccHHHHHHHHHHHHhcCCCcEeehhhhhcccceeEEEE
Confidence            4678999999999999999998 568999999976543  3457788999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |++.|++|..-|-.+.. .+......+.||+.++.|      +|||+||.|.+++.-.++..+|++|||.|.
T Consensus        90 e~m~G~dl~~eIV~R~~ySEa~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi  161 (355)
T KOG0033|consen   90 DLVTGGELFEDIVAREFYSEADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAI  161 (355)
T ss_pred             ecccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEE
Confidence            99999999988876632 233444567888889887      689999999997777778899999999875

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.85  E-value=2e-21  Score=140.43  Aligned_cols=136  Identities=20%  Similarity=0.251  Sum_probs=114.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhc--CCCCceeeeeeeeecC----Ccc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQ--INYRNVVKLLGCCLET----EVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~--l~h~~i~~l~~~~~~~----~~~   85 (167)
                      ..++..+.+.||+|.||.||+|.+ .|+.||||.+...++   +.|.+|.++.+.  ++|+||+.+++.-..+    ..+
T Consensus       209 iarqI~L~e~IGkGRyGEVwrG~w-rGe~VAVKiF~srdE---~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQL  284 (513)
T KOG2052|consen  209 IARQIVLQEIIGKGRFGEVWRGRW-RGEDVAVKIFSSRDE---RSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQL  284 (513)
T ss_pred             hhheeEEEEEecCccccceeeccc-cCCceEEEEecccch---hhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEE
Confidence            346788899999999999999998 688999999864433   678889988885  6999999999765433    248


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh--------------hhcccchhHHHHhhhccCCccccccc
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL--------------KRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~--------------h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      |+|++|.+.|||+|++.............++.++.||+++              |||+|+-||+   +-+++.++|+|+|
T Consensus       285 wLvTdYHe~GSL~DyL~r~tv~~~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNIL---VKkn~~C~IADLG  361 (513)
T KOG2052|consen  285 WLVTDYHEHGSLYDYLNRNTVTTEGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL---VKKNGTCCIADLG  361 (513)
T ss_pred             EEeeecccCCcHHHHHhhccCCHHHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEE---EccCCcEEEeece
Confidence            9999999999999999987655566667778888898874              7999999999   7888999999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      +|-
T Consensus       362 LAv  364 (513)
T KOG2052|consen  362 LAV  364 (513)
T ss_pred             eeE
Confidence            975

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=99.85  E-value=6.7e-21  Score=137.74  Aligned_cols=132  Identities=20%  Similarity=0.190  Sum_probs=106.6

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhc-CCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQ-INYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~-l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .....+....|..++.. .+||||+++++++...+..++|+||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~i~~~~~~~~~~~~~~lv~e~~~g   80 (316)
T cd05592           1 KVLGKGSFGKVMLAELKGTNEFFAIKALKKDVVLEDDDVECTMVERRVLALAWEHPFLTHLFCTFQTKEHLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999984 57889999987543   22334455667766665 4799999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... .....+....+++.++.+      +|+|+++.||+   +..+..++++|||+++
T Consensus        81 g~L~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nil---l~~~~~~kL~Dfg~a~  144 (316)
T cd05592          81 GDLMFHIQSSGRFDEARARFYAAEIICGLQFLHKKGIIYRDLKLDNVL---LDKDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeE---ECCCCCEEEccCcCCe
Confidence            999999876543 444555567788888877      46899999999   7888899999999987

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=99.85  E-value=9.3e-21  Score=137.36  Aligned_cols=137  Identities=19%  Similarity=0.184  Sum_probs=111.7

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +|.+.+.||+|+||.||++.. .+++.+|+|.+...   ..........|..++..+ +||+++++++++.+.+..++|+
T Consensus         1 df~~~~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05616           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALSGKPPFLTQLHSCFQTMDRLYFVM   80 (323)
T ss_pred             CceEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCeEeeEEEEEecCCEEEEEE
Confidence            578889999999999999984 46789999987643   223344567777777777 5899999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+.+..... ........+.+++.++.+      +|+|+++.||+   +..+..++++|||.++
T Consensus        81 E~~~~g~L~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nil---l~~~~~~kL~DfG~~~  149 (323)
T cd05616          81 EYVNGGDLMYQIQQVGRFKEPHAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVM---LDSEGHIKIADFGMCK  149 (323)
T ss_pred             cCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEecCCCHHHeE---ECCCCcEEEccCCCce
Confidence            99999999998876543 444555667788888877      46899999999   8888899999999886

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=99.85  E-value=7.4e-21  Score=137.75  Aligned_cols=132  Identities=22%  Similarity=0.220  Sum_probs=108.7

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+..|..++..+ +|||++++++++.+.+.+++||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~~~~~~~~~~~iv~Ey~~~   80 (320)
T cd05590           1 RVLGKGSFGKVMLARLKESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLYCCFQTPDRLFFVMEFVNG   80 (320)
T ss_pred             CeeeeCCCeEEEEEEEcCCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhccCCCchhceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999984 56889999987542   233455677888888776 699999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||+++
T Consensus        81 g~L~~~i~~~~~l~~~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIl---i~~~~~~kL~DfG~~~  144 (320)
T cd05590          81 GDLMFHIQKSRRFDEARARFYAAEITSALMFLHDKGIIYRDLKLDNVL---LDHEGHCKLADFGMCK  144 (320)
T ss_pred             chHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeE---ECCCCcEEEeeCCCCe
Confidence            999998876543 445556667788888877      57999999999   8888899999999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=99.85  E-value=7.8e-21  Score=137.64  Aligned_cols=132  Identities=21%  Similarity=0.197  Sum_probs=107.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||+|.. .+++.+|+|.+...   .....+.+..|.+++..+ +||+|+++++++...+..++||||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~hp~i~~~~~~~~~~~~~~lv~E~~~~   80 (321)
T cd05591           1 KVLGKGSFGKVMLAELKGTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALAAKHPFLTALHCCFQTKDRLFFVMEYVNG   80 (321)
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCeEEEEEeCCCC
Confidence            3689999999999985 46889999987542   233445677888888865 799999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|...+..... ........+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nil---l~~~~~~kL~Dfg~~~  144 (321)
T cd05591          81 GDLMFQIQRSRKFDEPRSRFYAAEVTLALMFLHRHGVIYRDLKLDNIL---LDAEGHCKLADFGMCK  144 (321)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE---ECCCCCEEEeecccce
Confidence            999988876543 444555566778888877      57899999999   7888899999999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=99.85  E-value=1.2e-20  Score=137.27  Aligned_cols=137  Identities=16%  Similarity=0.216  Sum_probs=111.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----cce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----VPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----~~~   86 (167)
                      +|.+.+.||+|+||.||++.. .++..+|+|.+...  .......+.+|+.+++.++||||+++++++...+     ..+
T Consensus         1 ry~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~~   80 (338)
T cd07859           1 RYKIQEVIGKGSYGVVCSAIDTHTGEKVAIKKINDVFEHVSDATRILREIKLLRLLRHPDIVEIKHIMLPPSRREFKDIY   80 (338)
T ss_pred             CeEEEEEEeecCCeEEEEEEECCCCCEEEEEEechhhccchhHHHHHHHHHHHHhCCCCCEeeecceEeccCCCCCceEE
Confidence            488899999999999999984 57899999987643  2233456889999999999999999999885432     479


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+. ++|.+++..... ........+.+++.|+.++      |+|+|+.||+   +..+..++|+|||.++.
T Consensus        81 lv~e~~~-~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl---l~~~~~~kL~Dfg~~~~  152 (338)
T cd07859          81 VVFELME-SDLHQVIKANDDLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNIL---ANADCKLKICDFGLARV  152 (338)
T ss_pred             EEEecCC-CCHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---ECCCCcEEEccCccccc
Confidence            9999995 589998876543 4455556677888888874      7899999999   88888999999999873

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.85  E-value=2.1e-20  Score=133.98  Aligned_cols=141  Identities=22%  Similarity=0.245  Sum_probs=118.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ....+|.+.+.+|+|++|.||++.. .+++.+++|.+........+.+.+|+.+++.++|||++++.+.+......++|+
T Consensus        17 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~v~~~~~~~~~~~~~~lv~   96 (296)
T cd06654          17 DPKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVM   96 (296)
T ss_pred             CcccceeeEEEecCCCCeEEEEEEECCCCcEEEEEEEecCCcchHHHHHHHHHHHHhCCCCCEeeEEEEEEeCCEEEEee
Confidence            3446899999999999999999984 578899999877655555677889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++.+...........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        97 e~~~~~~L~~~~~~~~~~~~~~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nil---l~~~~~~kl~dfg~~~  164 (296)
T cd06654          97 EYLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL---LGMDGSVKLTDFGFCA  164 (296)
T ss_pred             cccCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---EcCCCCEEECccccch
Confidence            99999999999876544444555566677777766      57999999999   7778889999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.85  E-value=2.8e-21  Score=142.68  Aligned_cols=142  Identities=25%  Similarity=0.368  Sum_probs=113.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-C-----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-A-----DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLET   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~-----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~   82 (167)
                      ...++|.+.+.||+|+||.||++.. .     ++..+|+|.+.... ....+.+.+|+.+++.+ +||||+++++.+...
T Consensus        35 ~~~~~~~~~~~LG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~~h~nIv~~~~~~~~~  114 (374)
T cd05106          35 FPRDNLQFGKTLGAGAFGKVVEATAFGLGKEDNVLRVAVKMLKASAHTDEREALMSELKILSHLGQHKNIVNLLGACTHG  114 (374)
T ss_pred             ccHHHceehheecCCCcccEEEEEEecCCcccccceeEEEeccCCCCHHHHHHHHHHHHHHHhhccCCceeeEeeEecCC
Confidence            3456799999999999999999873 2     23579999886543 33345688999999999 899999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc--------------------------------------------------------
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE--------------------------------------------------------  106 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~--------------------------------------------------------  106 (167)
                      +..++++||+++|+|.+++.....                                                        
T Consensus       115 ~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (374)
T cd05106         115 GPVLVITEYCCYGDLLNFLRKKAETFLNFVMALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQS  194 (374)
T ss_pred             CCeEEeHhhccCCcHHHHHHhhhhhhccccccccccccccccccccchhcccccccccccccccccccccCCcccccccc
Confidence            999999999999999999865321                                                        


Q ss_pred             ---------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          107 ---------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       107 ---------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                                     .....+..+.+++.++.+      +|+|+|+.|++   +..+..++++|||+++.
T Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~giiHrDLkp~Nil---~~~~~~~kL~DfGla~~  261 (374)
T cd05106         195 SDSKDEEDTEDSWPLDLDDLLRFSSQVAQGMDFLASKNCIHRDVAARNVL---LTDGRVAKICDFGLARD  261 (374)
T ss_pred             ccccchhccCCCCCcCHHHHHHHHHHHHHHHHHHHHCCEEeccCchheEE---EeCCCeEEEeeceeeee
Confidence                           112234456778888877      47999999999   77888899999999863

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.85  E-value=1.1e-20  Score=148.44  Aligned_cols=140  Identities=19%  Similarity=0.184  Sum_probs=118.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+....   ......+..|+.++..++||||+++++.+...+..++|
T Consensus         3 ~~~y~i~~~LG~G~fg~Vy~a~~~~~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~lV   82 (669)
T cd05610           3 IEEFVIVKPISRGAFGKVYLGRKKNNSKLYAVKVVKKADMINKNMVHQVQAERDALALSKSPFIVHLYYSLQSANNVYLV   82 (669)
T ss_pred             cCCEEEEEEEecCCCeEEEEEEECCCCcEEEEEEEehhhccCHHHHHHHHHHHHHHHhcCCCCcCeEEEEEEECCEEEEE
Confidence            46899999999999999999995 478999999876432   22346688899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||+++++|.+++..... .....+..+.+++.++.|      +|+|+|+.||+   +.....++|+|||+++.
T Consensus        83 mEy~~g~~L~~li~~~~~l~~~~~~~i~~qil~aL~yLH~~gIiHrDLKP~NIL---l~~~g~vkL~DFGls~~  153 (669)
T cd05610          83 MEYLIGGDVKSLLHIYGYFDEEMAVKYISEVALALDYLHRHGIIHRDLKPDNML---ISNEGHIKLTDFGLSKV  153 (669)
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCccHHHEE---EcCCCCEEEEeCCCCcc
Confidence            999999999999976543 445566677788888877      57899999999   77788999999999983

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=99.85  E-value=8.6e-21  Score=137.56  Aligned_cols=138  Identities=19%  Similarity=0.184  Sum_probs=112.4

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +|...+.||+|+||.||++.. .+++.+|+|.+...   .....+.+..|..++..+. |++++++++++.+.+..|+|+
T Consensus         1 ~f~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~   80 (323)
T cd05615           1 DFNFLMVLGKGSFGKVMLAERKGTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQDKPPFLTQLHSCFQTVDRLYFVM   80 (323)
T ss_pred             CceEEEEEEecCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccCCCchhheeeEEecCCEEEEEE
Confidence            467788999999999999984 57899999987542   2233456778888888875 578888999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+.+..... ........+.+++.++.+      +|+|++++|++   +..+..++++|||.++.
T Consensus        81 Ey~~~g~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nil---l~~~~~ikL~Dfg~~~~  150 (323)
T cd05615          81 EYVNGGDLMYHIQQVGKFKEPQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVM---LDSEGHIKIADFGMCKE  150 (323)
T ss_pred             cCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE---ECCCCCEEEeccccccc
Confidence            99999999999876543 455566667788888877      46899999999   88888999999998773

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=99.85  E-value=2.9e-21  Score=141.56  Aligned_cols=137  Identities=20%  Similarity=0.155  Sum_probs=111.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|...+.||+|+||.||++.. .+++.+++|.+.... ......+.+|+.+++.++|+||+++++++...+.+++++|
T Consensus        73 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  152 (353)
T PLN00034         73 LSELERVNRIGSGAGGTVYKVIHRPTGRLYALKVIYGNHEDTVRRQICREIEILRDVNHPNVVKCHDMFDHNGEIQVLLE  152 (353)
T ss_pred             HHHHhhhhhccCCCCeEEEEEEECCCCCEEEEEEEecCCcHHHHHHHHHHHHHHHhCCCCCcceeeeEeccCCeEEEEEe
Confidence            45678889999999999999984 578999999875432 2334678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+...   ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       153 ~~~~~~L~~~~~---~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~~~~kL~DfG~~~~  217 (353)
T PLN00034        153 FMDGGSLEGTHI---ADEQFLADVARQILSGIAYLHRRHIVHRDIKPSNLL---INSAKNVKIADFGVSRI  217 (353)
T ss_pred             cCCCCccccccc---CCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEE---EcCCCCEEEccccccee
Confidence            999999865322   1233444566777777776      57999999999   88889999999999874

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.85  E-value=1.6e-20  Score=131.85  Aligned_cols=139  Identities=24%  Similarity=0.316  Sum_probs=115.7

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|++|.||.+....+..+++|.+... ....+.+.+|+.++..++||||+++++++...+..++++||+
T Consensus         3 ~~~~~~~~~lg~G~~~~vy~~~~~~~~~~aik~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   81 (256)
T cd05113           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMKLSHEKLVQLYGVCTKQRPIYIVTEYM   81 (256)
T ss_pred             hHHeEEeeEecCcccceEEEEEecCCCcEEEEEcCCC-cccHHHHHHHHHHHhcCCCCCeeeEEEEEccCCCcEEEEEcC
Confidence            3568888999999999999998666667999987643 233467889999999999999999999999889999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+++.....  .....+....+++.++.++      |+|+++.|++   +..+..++++|||.++.
T Consensus        82 ~~~~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~nil---i~~~~~~kl~d~g~~~~  149 (256)
T cd05113          82 SNGCLLNYLREHGKRFQPSQLLEMCKDVCEGMAYLESKQFIHRDLAARNCL---VDDQGCVKVSDFGLSRY  149 (256)
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEE---EcCCCCEEECCCcccee
Confidence            99999999876432  4445566777888888775      6899999999   77788899999998773

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=1.2e-20  Score=134.48  Aligned_cols=138  Identities=22%  Similarity=0.167  Sum_probs=112.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .|++.+.||+|+||.||++.. .++..+|+|.+....   ......+.+|+.+++.++||||+++++.+.+++..++++|
T Consensus         1 ~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   80 (285)
T cd05605           1 TFRHYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLT   80 (285)
T ss_pred             CceEEEEEecCCCeEEEEEEEcCCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHhcCCCCEeeeeeeecCCCeEEEEEe
Confidence            478889999999999999984 578899999875432   2223456789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+.+....   .+.......+.+++.++.++      |+|+++.|++   +.+...++++|||.++.
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~~l~Dfg~~~~  151 (285)
T cd05605          81 LMNGGDLKFHIYNMGNPGFDEERAVFYAAEITCGLEDLHRERIVYRDLKPENIL---LDDYGHIRISDLGLAVE  151 (285)
T ss_pred             ccCCCcHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEE---ECCCCCEEEeeCCCcee
Confidence            999999998886542   23444555567788887764      6899999999   77788899999998874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.84  E-value=1.7e-20  Score=131.96  Aligned_cols=140  Identities=20%  Similarity=0.321  Sum_probs=115.8

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|++|.||++...++..+++|.+... ....+.+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~v~iK~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05072           4 PRESIKLVKKLGAGQFGEVWMGYYNNSTKVAVKTLKPG-TMSVQAFLEEANLMKTLQHDKLVRLYAVVTKEEPIYIITEY   82 (261)
T ss_pred             chHHeEEeeecCCcCCceEEEEEecCCceEEEEEccCC-chhHHHHHHHHHHHHhCCCCCeeeEEEEEcCCCCcEEEEec
Confidence            34678999999999999999998767788999987543 23456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +.++..++++|||++..
T Consensus        83 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil---i~~~~~~~l~dfg~~~~  152 (261)
T cd05072          83 MAKGSLLDFLKSDEGGKVLLPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVL---VSESLMCKIADFGLARV  152 (261)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEE---ecCCCcEEECCCcccee
Confidence            999999999876432   233444456677777776      46899999999   78888899999999874

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.84  E-value=9.4e-21  Score=133.66  Aligned_cols=140  Identities=17%  Similarity=0.213  Sum_probs=117.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||.+.. .++..+++|.++.........+.+|+.+++.++|||++++++.+...+..++++|
T Consensus         7 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~~~~l~h~~ii~~~~~~~~~~~~~lv~e   86 (267)
T cd06645           7 PQEDFELIQRIGSGTYGDVYKARNVNTGELAAIKVIKLEPGEDFAVVQQEIIMMKDCKHSNIVAYFGSYLRRDKLWICME   86 (267)
T ss_pred             cHHHHHHHHHhCCCCCeEEEEEEEcCCCcEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCeeeEEEEEEeCCEEEEEEe
Confidence            345788999999999999999984 5788999998876555555667889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++..... +....+....+++.++.+      +|+|+++.|++   +.....++++|||.+.
T Consensus        87 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil---i~~~~~~~l~dfg~~~  154 (267)
T cd06645          87 FCGGGSLQDIYHVTGPLSESQIAYVSRETLQGLYYLHSKGKMHRDIKGANIL---LTDNGHVKLADFGVSA  154 (267)
T ss_pred             ccCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEECcceeee
Confidence            9999999999876543 444555566777777776      47899999999   7777889999999875

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=99.84  E-value=1.2e-20  Score=136.39  Aligned_cols=132  Identities=20%  Similarity=0.174  Sum_probs=107.7

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhc-CCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQ-INYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~-l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.++..   ..........|..++.. ++||||+++++++.+.+..++++||+++
T Consensus         1 ~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~ey~~~   80 (316)
T cd05619           1 KMLGKGSFGKVFLAELKGTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHLYCTFQTKENLFFVMEYLNG   80 (316)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCcCcceEEEEEeCCEEEEEEeCCCC
Confidence            3689999999999995 46889999987643   12334556677777775 4899999999999999999999999999


Q ss_pred             CCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+.... .........+.+++.++.+      +|+|+++.|++   +.++..++++|||+++
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil---~~~~~~~kl~Dfg~~~  144 (316)
T cd05619          81 GDLMFHIQSCHKFDLPRATFYAAEIICGLQFLHSKGIVYRDLKLDNIL---LDTDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEE---ECCCCCEEEccCCcce
Confidence            99999998653 2445556667788888877      57999999999   7888899999999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>PHA03212 serine/threonine kinase US3; Provisional

Probab=99.84  E-value=1.4e-20  Score=139.69  Aligned_cols=133  Identities=15%  Similarity=0.147  Sum_probs=110.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|...      ...+.+|+.+++.++||||+++++++......++++|+
T Consensus        91 ~~~y~~~~~lg~G~~g~V~~~~d~~~~~~vaiK~~~------~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~lv~e~  164 (391)
T PHA03212         91 KAGFSILETFTPGAEGFAFACIDNKTCEHVVIKAGQ------RGGTATEAHILRAINHPSIIQLKGTFTYNKFTCLILPR  164 (391)
T ss_pred             cCCcEEEEEEcCCCCeEEEEEEECCCCCEEEEechh------hhhhHHHHHHHHhCCCCCCCCEeEEEEECCeeEEEEec
Confidence            46799999999999999999984 578899999643      23567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +. ++|..++..... ........+.+++.|+.|      +|+|+|++||+   +.....++|+|||+|+.
T Consensus       165 ~~-~~L~~~l~~~~~l~~~~~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIl---l~~~~~vkL~DFG~a~~  231 (391)
T PHA03212        165 YK-TDLYCYLAAKRNIAICDILAIERSVLRAIQYLHENRIIHRDIKAENIF---INHPGDVCLGDFGAACF  231 (391)
T ss_pred             CC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHhEE---EcCCCCEEEEeCCcccc
Confidence            95 588888876542 444455566778888877      57999999999   77888899999999863

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.84  E-value=9.2e-21  Score=133.42  Aligned_cols=135  Identities=27%  Similarity=0.392  Sum_probs=110.7

Q ss_pred             ccceecccCceeEEEEEeC-----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           18 VNIVLGQGGQGTVHKGMLA-----DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~-----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.+.||.|+||.||+|.+.     .+..|++|.+.... ....+.+.+|++.+..++||||++++|++...+..++|+||
T Consensus         3 ~~~~ig~G~fg~v~~~~~~~~~~~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~g~~~~~~~~~lv~e~   82 (259)
T PF07714_consen    3 LIKQIGEGSFGKVYRAEWKQKDNDKNQPVAVKILKPSSSEEEEEEFLNEIQILRKLRHPNIVKLYGFCIENEPLFLVMEY   82 (259)
T ss_dssp             EEEEEEEESSEEEEEEEEESTTTSSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTHSBTTBE-EEEEEESSSSEEEEEE-
T ss_pred             EeeEEccCCCcEEEEEEEEcccCCCCEEEEEEEeccccccccceeeeecccccccccccccccccccccccccccccccc
Confidence            4578999999999999854     35779999886543 33467899999999999999999999999988889999999


Q ss_pred             CCCCCHHHHHhhc---CcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQ---NEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~---~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|+|.+++...   .......+..+.+++.|+.|+      |+++++.|++   ++.+..+|++|||++..
T Consensus        83 ~~~g~L~~~L~~~~~~~~~~~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nil---l~~~~~~Kl~~f~~~~~  152 (259)
T PF07714_consen   83 CPGGSLDDYLKSKNKEPLSEQQRLSIAIQIAEALSYLHSNNIIHGNLSPSNIL---LDSNGQVKLSDFGLSRP  152 (259)
T ss_dssp             -TTEBHHHHHHHTCTTTSBHHHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEE---EETTTEEEEESTTTGEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence            9999999999987   225556667788999999885      6899999999   88889999999998873

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.84  E-value=2.2e-20  Score=132.87  Aligned_cols=140  Identities=29%  Similarity=0.382  Sum_probs=114.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~   85 (167)
                      .++|.+.+.||+|+||.||.+..     .++..+++|.+........+.+.+|+.+++.++|||++++.+++..  ....
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   82 (284)
T cd05081           3 ERHLKFIQQLGKGNFGSVELCRYDPLQDNTGEVVAVKKLQHSTAEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRNL   82 (284)
T ss_pred             cccceeeeeccCCCCceEEEEEecCCcCCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEccCCCCce
Confidence            45788899999999999999863     2578899999876655556778899999999999999999998754  3568


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++++|.+++.....  .....+..+.+++.++.++      |+|+++.|++   +..+..++++|||+++.
T Consensus        83 ~lv~e~~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nil---i~~~~~~~l~dfg~~~~  157 (284)
T cd05081          83 RLVMEYLPYGSLRDYLQKHRERLDHRKLLLYASQICKGMEYLGSKRYVHRDLATRNIL---VESENRVKIGDFGLTKV  157 (284)
T ss_pred             EEEEEecCCCCHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHhhEE---ECCCCeEEECCCccccc
Confidence            899999999999999976432  4445556677788888774      6899999999   77888899999999873

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.84  E-value=1.6e-20  Score=148.99  Aligned_cols=139  Identities=17%  Similarity=0.146  Sum_probs=113.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||+|.. .+++.+|+|.+....   ....+.+.+|+++++.++|||++++++++...+..+++|
T Consensus         2 grYeIi~~LGkGgfG~VYlA~d~~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~L~HPNIVkl~~v~~d~~~lyLVM   81 (932)
T PRK13184          2 QRYDIIRLIGKGGMGEVYLAYDPVCSRRVALKKIREDLSENPLLKKRFLREAKIAADLIHPGIVPVYSICSDGDPVYYTM   81 (932)
T ss_pred             CCeEEEEEEecCCCEEEEEEEECCCCcEEEEEEECcccccCHHHHHHHHHHHHHHHhCCCcCcCeEEEEEeeCCEEEEEE
Confidence            5799999999999999999985 468999999876432   223457889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           90 EYIPNGNLSDYLHEQNE------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      ||++||+|.+++.....            .....+..+.+++.++.+      +|+|+||+||+   +..+..++++|||
T Consensus        82 EY~eGGSL~~lL~s~~~~~~l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNIL---Ld~dg~vKLiDFG  158 (932)
T PRK13184         82 PYIEGYTLKSLLKSVWQKESLSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNIL---LGLFGEVVILDWG  158 (932)
T ss_pred             EcCCCCCHHHHHHHhhhccccchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEE---EcCCCCEEEEecC
Confidence            99999999999874211            011223345567777766      57999999999   7888889999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      .++.
T Consensus       159 LAk~  162 (932)
T PRK13184        159 AAIF  162 (932)
T ss_pred             ccee
Confidence            9874

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=99.84  E-value=1.4e-20  Score=136.49  Aligned_cols=132  Identities=19%  Similarity=0.157  Sum_probs=105.7

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHH-HHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVV-ILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~-~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+....   ......+..|.. +++.++||||+++++.+...+..++++||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~l~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (323)
T cd05575           1 KVIGKGSFGKVLLAKHKADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTADKLYFVLDYVNG   80 (323)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhhCCCCCCCCeeEEEEeCCEEEEEEcCCCC
Confidence            3689999999999995 578999999875431   222334555544 55778999999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|...+..... ........+.+++.++.+      +|+|+++.||+   +..+..++++|||+++
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~givH~dikp~NIl---l~~~~~~kl~Dfg~~~  144 (323)
T cd05575          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSLNIIYRDLKPENIL---LDSQGHVVLTDFGLCK  144 (323)
T ss_pred             CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeE---ECCCCcEEEeccCCCc
Confidence            999998876543 444555567788888877      47899999999   8888899999999886

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.84  E-value=8.6e-21  Score=133.39  Aligned_cols=141  Identities=19%  Similarity=0.292  Sum_probs=118.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|++|.||++....+..+++|.+..........+..|+.+++.++|||++++++++...+..++++||
T Consensus         4 ~~~~y~~~~~ig~g~~~~vy~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   83 (261)
T cd05148           4 PREEFTLERKLGSGYFGEVWEGLWKNRVRVAIKILKSDDLLKQQDFQKEVQALKRLRHKHLISLFAVCSVGEPVYIITEL   83 (261)
T ss_pred             cHHHHHHhhhhccCCCccEEEeEecCCCcEEEEeccccchhhHHHHHHHHHHHhcCCCcchhheeeeEecCCCeEEEEee
Confidence            34578999999999999999999766889999998766555667888999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.+...   .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nil---v~~~~~~kl~d~g~~~~  153 (261)
T cd05148          84 MEKGSLLAFLRSPEGQVLPVASLIDMACQVAEGMAYLEEQNSIHRDLAARNIL---VGEDLVCKVADFGLARL  153 (261)
T ss_pred             cccCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccCcceEE---EcCCceEEEccccchhh
Confidence            999999999986432   333445556677777776      47899999999   88888999999998864

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.84  E-value=2.1e-20  Score=135.08  Aligned_cols=139  Identities=22%  Similarity=0.361  Sum_probs=112.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|...+.||+|+||.||+|.+ .++.    .+++|.+.... ....+.+.+|+.+++.++||||+++++++... ..+
T Consensus         6 ~~~f~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~g~~~~~-~~~   84 (316)
T cd05108           6 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQ   84 (316)
T ss_pred             hhhceeeeeeecCCCceEEEEEEecCCCccceeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEcCC-Cce
Confidence            45799999999999999999984 3443    38899876443 34456788999999999999999999998764 567


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++|+++|+|.+.+.....  +....+....+++.++.|      +|+|+++.|++   +..+..++++|||.++.
T Consensus        85 ~v~e~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~iiH~dlkp~Nil---l~~~~~~kl~DfG~a~~  158 (316)
T cd05108          85 LITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEERRLVHRDLAARNVL---VKTPQHVKITDFGLAKL  158 (316)
T ss_pred             eeeecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHhcCeeccccchhheE---ecCCCcEEEcccccccc
Confidence            89999999999999987542  344455667788888877      46899999999   77888999999999884

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=99.84  E-value=1.6e-20  Score=136.26  Aligned_cols=133  Identities=18%  Similarity=0.126  Sum_probs=106.0

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHH-HHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVV-ILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~-~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+..|.. +++.++||||+++++.+...+..++++||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~hp~iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05604           1 KVIGKGSFGKVLLAKRKLDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKNVKHPFLVGLHYSFQTTEKLYFVLDFVNG   80 (325)
T ss_pred             CceeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHhCCCCCCccEEEEEecCCEEEEEEcCCCC
Confidence            3689999999999984 57899999987543   2223344555554 46778999999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|...+..... .....+..+.+++.++.+      +|+|+|+.||+   +..+..++++|||+++.
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIl---l~~~~~~kL~DfG~~~~  145 (325)
T cd05604          81 GELFFHLQRERSFPEPRARFYAAEIASALGYLHSINIVYRDLKPENIL---LDSQGHVVLTDFGLCKE  145 (325)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeE---ECCCCCEEEeecCCccc
Confidence            999988876543 444555567788888877      57899999999   88888999999998863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=99.84  E-value=2.6e-20  Score=134.15  Aligned_cols=139  Identities=22%  Similarity=0.286  Sum_probs=113.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|.+.+.||+|+||.||++.. .++..+|+|.+.... ......+.+|+.+++.++|||++++++++..++..++++|
T Consensus         5 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   84 (309)
T cd07872           5 METYIKLEKLGEGTYATVFKGRSKLTENLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIVHTDKSLTLVFE   84 (309)
T ss_pred             CCceEEEEEecccCCEEEEEEEecCCCCeEEEEEeeccccCCcchhHHHHHHHHHhCCCCCcceEEEEEeeCCeEEEEEe
Confidence            46799999999999999999984 478889999876442 2233467789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++ +|.+.+.....  .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.++.
T Consensus        85 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nil---l~~~~~~kl~Dfg~~~~  153 (309)
T cd07872          85 YLDK-DLKQYMDDCGNIMSMHNVKIFLYQILRGLAYCHRRKVLHRDLKPQNLL---INERGELKLADFGLARA  153 (309)
T ss_pred             CCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEECcccccee
Confidence            9976 88888876543  334444556678777776      57999999999   78888999999999874

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=99.84  E-value=2e-20  Score=135.89  Aligned_cols=132  Identities=20%  Similarity=0.163  Sum_probs=109.2

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..+ +||+++++++++.+.+..++|+||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (327)
T cd05617           1 RVIGRGSYAKVLLVRLKKNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQASSNPFLVGLHSCFQTTSRLFLVIEYVNG   80 (327)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhhcCCCCEeeEEEEEEeCCEEEEEEeCCCC
Confidence            4689999999999984 57889999987643   223445678888888887 699999999999999999999999999


Q ss_pred             CCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+.... .........+.+++.++.+      +|+|+++.|++   +..+..++++|||+++
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nil---i~~~~~~kl~Dfg~~~  144 (327)
T cd05617          81 GDLMFHMQRQRKLPEEHARFYAAEICIALNFLHERGIIYRDLKLDNVL---LDADGHIKLTDYGMCK  144 (327)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE---EeCCCCEEEeccccce
Confidence            99998887653 3455566667788888877      47999999999   7888899999999886

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.84  E-value=3.1e-20  Score=130.38  Aligned_cols=138  Identities=22%  Similarity=0.305  Sum_probs=113.8

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      .+|.+.+.||+|++|.||++...++..+++|.+... ......+.+|+.+++.++|||++++++++...+..++++||++
T Consensus         4 ~~~~~~~~lg~G~~~~v~~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~   82 (256)
T cd05059           4 SELTFLKELGSGQFGVVHLGKWRGKIDVAIKMIREG-AMSEDDFIEEAKVMMKLSHPNLVQLYGVCTKQRPIFIVTEYMA   82 (256)
T ss_pred             HHcchhhhhccCCCceEEEeEecCCccEEEEEeccC-CCCHHHHHHHHHHHHhCCCCCEEEEEEEEcCCCceEEEEecCC
Confidence            457888999999999999998766778999987533 2234568889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           94 NGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        83 ~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~---i~~~~~~kl~dfg~~~~  149 (256)
T cd05059          83 NGCLLNYLRERKGKLGTEWLLDMCSDVCEAMEYLESNGFIHRDLAARNCL---VGEDNVVKVSDFGLARY  149 (256)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCcccccccHhhEE---ECCCCcEEECCccccee
Confidence            9999999876432  334445566777777766      57899999999   78888899999998874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=99.84  E-value=1.7e-20  Score=135.84  Aligned_cols=133  Identities=20%  Similarity=0.123  Sum_probs=105.4

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHH-HHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVV-ILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~-~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+..|.. +++.++||||+++++.+.+.+..++++||+++
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (321)
T cd05603           1 KVIGKGSFGKVLLAKRKSDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKNLKHPFLVGLHYSFQTAEKLYFVLDYVNG   80 (321)
T ss_pred             CeeeeCCCEEEEEEEECCCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHhCCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999995 57889999987532   1222334555554 57788999999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|...+..... .....+..+.+++.++.+      +|+|+|+.||+   +..+..++++|||+++.
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIl---l~~~~~~kl~Dfg~~~~  145 (321)
T cd05603          81 GELFFHLQRERCFLEPRARFYAAEVASAIGYLHSLNIIYRDLKPENIL---LDSQGHVVLTDFGLCKE  145 (321)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeE---ECCCCCEEEccCCCCcc
Confidence            999988876543 344455566788888877      47899999999   88888999999998763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=99.84  E-value=1.6e-20  Score=135.75  Aligned_cols=132  Identities=20%  Similarity=0.192  Sum_probs=106.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .++..+|+|.++..   ..........|..++... +||+++++++++.+.+..|+||||+++
T Consensus         1 ~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~i~~~~~~~~~~~~~~lv~E~~~~   80 (316)
T cd05620           1 KVLGKGSFGKVLLAELKGKGEYFAVKALKKDVVLIDDDVECTMVEKRVLALAWENPFLTHLYCTFQTKEHLFFVMEFLNG   80 (316)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHhccCCCCccCeeEEEEeCCEEEEEECCCCC
Confidence            4689999999999995 47889999987643   123445567777777754 899999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... ........+.+++.++.+      +|+|++++||+   +..+..++++|||.++
T Consensus        81 g~L~~~i~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil---~~~~~~~kl~Dfg~~~  144 (316)
T cd05620          81 GDLMFHIQDKGRFDLYRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVM---LDRDGHIKIADFGMCK  144 (316)
T ss_pred             CcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeE---ECCCCCEEeCccCCCe
Confidence            999999876543 344445556778888777      57999999999   7888899999999876

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=99.84  E-value=1.8e-20  Score=135.57  Aligned_cols=132  Identities=20%  Similarity=0.209  Sum_probs=108.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+...   .......+..|..++..+ +||||+++++++.+.+..++++||+++
T Consensus         1 ~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~   80 (318)
T cd05570           1 KVLGKGSFGKVLLAELKGTDELYAVKVLKKDVILQDDDVECTMTEKRVLALAGKHPFLTQLHSCFQTKDRLFFVMEYVNG   80 (318)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhccCCCCccceeeEEEcCCEEEEEEcCCCC
Confidence            3689999999999985 46889999987643   233445677888888877 699999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|...+..... ........+.+++.++.+      +|+|+++.||+   +.++..++++|||+++
T Consensus        81 ~~L~~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil---l~~~~~~kl~Dfg~~~  144 (318)
T cd05570          81 GDLMFHIQRSGRFDEPRARFYAAEIVLGLQFLHERGIIYRDLKLDNVL---LDSEGHIKIADFGMCK  144 (318)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeEccCCCHHHeE---ECCCCcEEecccCCCe
Confidence            999998886643 445555667788888877      57899999999   8888899999999876

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.84  E-value=2.3e-20  Score=133.42  Aligned_cols=141  Identities=18%  Similarity=0.195  Sum_probs=118.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..+.|++.+.||+|+||.||++.. .++..+++|.+........+.+.+|+..++.++|||++++++.+..++..++++|
T Consensus        10 ~~~~y~i~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   89 (292)
T cd06644          10 PNEVWEIIGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYMVEIEILATCNHPYIVKLLGAFYWDGKLWIMIE   89 (292)
T ss_pred             cchhhhhhheecCCCCeEEEEEEECCCCceEEEEEeccCCHHHHHHHHHHHHHHHhCCCCcEeeeEEEEEeCCeEEEEEe
Confidence            346799999999999999999985 5688999998876666666778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|...+.+..  ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        90 ~~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~kl~dfg~~~~  159 (292)
T cd06644          90 FCPGGAVDAIMLELDRGLTEPQIQVICRQMLEALQYLHSMKIIHRDLKAGNVL---LTLDGDIKLADFGVSAK  159 (292)
T ss_pred             cCCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeecCCCcceEE---EcCCCCEEEccCcccee
Confidence            999999988876533  2445556667777777776      57899999999   77788899999998763

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.84  E-value=2.1e-20  Score=132.77  Aligned_cols=139  Identities=19%  Similarity=0.188  Sum_probs=118.4

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|++|.||++.. .++..+++|..........+.+..|+.+++.++|||++++++.+..++..++++||
T Consensus         4 ~~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (280)
T cd06611           4 NDIWEIIGELGDGAFGKVYKAQHKETGLFAAAKIIQIESEEELEDFMVEIDILSECKHPNIVGLYEAYFYENKLWILIEF   83 (280)
T ss_pred             hhHHHHHHHhcCCCCceEEEEEEcCCCcEEEEEEEeeCCHHHHHHHHHHHHHHHhCCCCceeEEEEEEecCCeEEEEeec
Confidence            46799999999999999999985 46889999988766555667788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.+.
T Consensus        84 ~~~~~L~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nil---i~~~~~~~l~d~g~~~  151 (280)
T cd06611          84 CDGGALDSIMLELERGLTEPQIRYVCRQMLEALNFLHSHKVIHRDLKAGNIL---LTLDGDVKLADFGVSA  151 (280)
T ss_pred             cCCCcHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEE---ECCCCCEEEccCccch
Confidence            999999999876432  445555667788888877      46899999999   7788889999999765

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.83  E-value=3e-20  Score=130.76  Aligned_cols=140  Identities=19%  Similarity=0.267  Sum_probs=116.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|++|.||++...++..+++|.+.... ...+.+.+|+.+++.++|||++++++++...+..++++||
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~~~~~~v~iK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   82 (261)
T cd05068           4 DRTSIQLLRKLGAGQFGEVWEGLWNNTTPVAVKTLKPGT-MDPKDFLAEAQIMKKLRHPKLIQLYAVCTLEEPIYIVTEL   82 (261)
T ss_pred             chhheeeEEEecccCCccEEEEEecCCeEEEEEeeCCCc-ccHHHHHHHHHHHHHCCCCCccceeEEEecCCCeeeeeec
Confidence            456789999999999999999986667789999876433 3356788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++....   .........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        83 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~~l~dfg~~~~  152 (261)
T cd05068          83 MKYGSLLEYLQGGAGRALKLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVL---VGENNICKVADFGLARV  152 (261)
T ss_pred             ccCCcHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEE---EcCCCCEEECCcceEEE
Confidence            99999999997654   2344445556667777766      56899999999   78888899999998874

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=99.83  E-value=6.5e-21  Score=143.00  Aligned_cols=140  Identities=22%  Similarity=0.205  Sum_probs=113.1

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC------CCceeeeeeeeecCCcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQIN------YRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~------h~~i~~l~~~~~~~~~~~l   87 (167)
                      +|.+.+.||+|+||.|.+|. ..+++.||+|+++.. .....+...|++++..++      --|+|+++++|..++.++|
T Consensus       187 rY~V~e~LGkGtFGQVvk~~d~~T~e~VAIKIiKN~-k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~fr~Hlci  265 (586)
T KOG0667|consen  187 RYEVLEVLGKGSFGQVVKAYDHKTGEIVAIKIIKNK-KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFYFRNHLCI  265 (586)
T ss_pred             EEEEEEEecccccceeEEEEecCCCcEEEEEeeccC-hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccccccceee
Confidence            78999999999999999999 568999999999743 445567778999888875      3589999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      |+|.+.. +|.++++....   ..........|++.+|..      +|.||||+|||+.+-.+ ..+|++|||.|....
T Consensus       266 VfELL~~-NLYellK~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r-~~vKVIDFGSSc~~~  342 (586)
T KOG0667|consen  266 VFELLST-NLYELLKNNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKR-SRIKVIDFGSSCFES  342 (586)
T ss_pred             eehhhhh-hHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCc-CceeEEecccccccC
Confidence            9999966 99999998754   344445556666666654      79999999999554444 388999999988653

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.83  E-value=7.7e-20  Score=128.88  Aligned_cols=138  Identities=22%  Similarity=0.352  Sum_probs=114.5

Q ss_pred             CCcccceecccCceeEEEEEeCCCcEEEEEeccCCCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +|.+.+.||+|+||.||++...+++.+++|.+.....      .....+.+|+..++.++|+|++++.+++.+.+..+++
T Consensus         1 ~~~~~~~ig~g~~~~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv   80 (265)
T cd06631           1 EWTKGEVLGKGAYGTVYCGLTNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSLKHVNIVQYLGTCLDDNTISIF   80 (265)
T ss_pred             CccccceEeccCCeEEEEEEEcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhcCCCCEeeEeeEeecCCeEEEE
Confidence            4778899999999999999877888999998754321      1234578899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++.+... .....+..+.+++.++.+      +|+++++.|++   +.++..++++|||++..
T Consensus        81 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~~  151 (265)
T cd06631          81 MEFVPGGSISSILNRFGPLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVM---LMPNGIIKLIDFGCARR  151 (265)
T ss_pred             EecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEE---ECCCCeEEeccchhhHh
Confidence            999999999999986543 445555566777777766      57899999999   78888899999998874

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.83  E-value=4.7e-20  Score=132.18  Aligned_cols=140  Identities=21%  Similarity=0.281  Sum_probs=118.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|++.+.||.|++|.||++.. .+++.+++|.+........+.+.+|+..++.++|||++++++.+...+..++++|
T Consensus        17 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   96 (296)
T cd06655          17 PKKKYTRYEKIGQGASGTVFTAIDVATGQEVAIKQINLQKQPKKELIINEILVMKELKNPNIVNFLDSFLVGDELFVVME   96 (296)
T ss_pred             CcceEEEEEEEecCCCeEEEEEEEcCCCcEEEEEEEecccCchHHHHHHHHHHHHhcCCCceeeeeeeEecCceEEEEEE
Confidence            345799999999999999999984 5789999998865555556778899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++.+...........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        97 ~~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~~i~H~dL~p~Nil---i~~~~~~kl~dfg~~~  163 (296)
T cd06655          97 YLAGGSLTDVVTETCMDEAQIAAVCRECLQALEFLHANQVIHRDIKSDNVL---LGMDGSVKLTDFGFCA  163 (296)
T ss_pred             ecCCCcHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEEccCccch
Confidence            9999999998876554555555666677777766      57999999999   7788889999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.83  E-value=4.3e-20  Score=129.26  Aligned_cols=133  Identities=22%  Similarity=0.347  Sum_probs=109.9

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      +.||+|+||.||++.. .++..+++|...... ......+.+|+++++.++||||+++++++...+..++++||+++++|
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (252)
T cd05084           1 ERIGRGNFGEVFSGRLRADNTPVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVMELVQGGDF   80 (252)
T ss_pred             CccCcccCccEEEEEEecCCceEEEEecCccCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEcCCCCeEEEEeeccCCcH
Confidence            3689999999999984 578899999765432 33446788999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil---~~~~~~~kl~dfg~~~~  143 (252)
T cd05084          81 LTFLRTEGPRLKVKELIQMVENAAAGMEYLESKHCIHRDLAARNCL---VTEKNVLKISDFGMSRE  143 (252)
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEE---EcCCCcEEECccccCcc
Confidence            999976442  344556667778877776      56899999999   77788899999998764

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.83  E-value=4.2e-20  Score=131.98  Aligned_cols=139  Identities=21%  Similarity=0.182  Sum_probs=116.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|++|.||++.. .+++.+++|.+...   .......+.+|+.+++.++||||+++++.+...+..++++
T Consensus         1 ~~y~~~~~ig~g~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   80 (290)
T cd05580           1 DDFEFIKTLGTGSFGRVMLVRHKGSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSIRHPFLVNLYGSFQDDSNLYLVM   80 (290)
T ss_pred             CceEEEEEeecCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhCCCCCccceeeEEEcCCeEEEEE
Confidence            4788999999999999999984 46899999987543   2334567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++..... +....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||+++.
T Consensus        81 e~~~~~~L~~~~~~~~~l~~~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nil---i~~~~~~kl~dfg~~~~  150 (290)
T cd05580          81 EYVPGGELFSHLRKSGRFPEPVARFYAAQVVLALEYLHSLDIVYRDLKPENLL---LDSDGYIKITDFGFAKR  150 (290)
T ss_pred             ecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE---ECCCCCEEEeeCCCccc
Confidence            99999999999986643 444555566778888876      46899999999   77788899999998874

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.83  E-value=2.7e-20  Score=141.76  Aligned_cols=145  Identities=19%  Similarity=0.196  Sum_probs=116.1

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-   83 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-   83 (167)
                      +.....++|.+.+.||+|+||.||++. ..+++.+|+|.+...  .......+.+|+..+..++|+|++++++.+...+ 
T Consensus        26 ~~~~~~~rY~i~~~LG~G~fG~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~~~h~~iv~~~~~~~~~~~  105 (496)
T PTZ00283         26 TAKEQAKKYWISRVLGSGATGTVLCAKRVSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLNCDFFSIVKCHEDFAKKDP  105 (496)
T ss_pred             cccccCCCEEEEEEEecCCCEEEEEEEEcCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhcCCCCcEEEeecceecccc
Confidence            445566899999999999999999998 457899999987643  2334556788999999999999999988775432 


Q ss_pred             -------cceEEEecCCCCCHHHHHhhcCc-----chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           84 -------VPLLVYEYIPNGNLSDYLHEQNE-----DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        84 -------~~~lv~e~~~~g~L~~~i~~~~~-----~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                             .+++++||+++|+|.+.+.....     .....+..+.+++.++.+      +|+|+||.||+   +..+..+
T Consensus       106 ~~~~~~~~i~lV~Ey~~~gsL~~~l~~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NIL---l~~~~~v  182 (496)
T PTZ00283        106 RNPENVLMIALVLDYANAGDLRQEIKSRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANIL---LCSNGLV  182 (496)
T ss_pred             cCcccceEEEEEEeCCCCCcHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---EeCCCCE
Confidence                   36799999999999999875421     233445567788888877      57999999999   7888899


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +|+|||+++.
T Consensus       183 kL~DFGls~~  192 (496)
T PTZ00283        183 KLGDFGFSKM  192 (496)
T ss_pred             EEEecccCee
Confidence            9999999874

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.83  E-value=3e-20  Score=132.99  Aligned_cols=140  Identities=21%  Similarity=0.369  Sum_probs=110.7

Q ss_pred             hcCCcccceecccCceeEEEEEeCC---------------CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLAD---------------ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLL   76 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~---------------~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~   76 (167)
                      .++|.+.+.||+|+||.||.+....               ...+++|.+.... ......+.+|+++++.++|||+++++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~   83 (295)
T cd05097           4 RQQLRLKEKLGEGQFGEVHLCEAEGLAEFLGEGAPEFDGQPVLVAVKMLRADVTKTARNDFLKEIKIMSRLKNPNIIRLL   83 (295)
T ss_pred             hHhCeehhccCCCCCceEEecccccchhhccccCcccCCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCcCeEE
Confidence            3578999999999999999986421               2358899876432 23345688999999999999999999


Q ss_pred             eeeecCCcceEEEecCCCCCHHHHHhhcCc-------------chHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           77 GCCLETEVPLLVYEYIPNGNLSDYLHEQNE-------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        77 ~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~-------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      +++...+..++++||+++++|.+++.....             .....+..+.+++.++.+      +|+|+++.|++  
T Consensus        84 ~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil--  161 (295)
T cd05097          84 GVCVSDDPLCMITEYMENGDLNQFLSQREIESTFTHANNIPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCL--  161 (295)
T ss_pred             EEEcCCCccEEEEecCCCCcHHHHHHhccccccccccccCCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEE--
Confidence            999999999999999999999999875421             122233445667777766      57999999999  


Q ss_pred             hhhccCCccccccchhhh
Q 040049          138 QLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~~  155 (167)
                       +..+..++++|||.++.
T Consensus       162 -l~~~~~~kl~dfg~~~~  178 (295)
T cd05097         162 -VGNHYTIKIADFGMSRN  178 (295)
T ss_pred             -EcCCCcEEecccccccc
Confidence             77788899999998863

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=99.83  E-value=3.6e-20  Score=134.38  Aligned_cols=132  Identities=20%  Similarity=0.159  Sum_probs=103.3

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHH-HHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKV-VILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~-~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++.. .+++.+|+|.+....   ......+..|. .+++.++||||+++++.+...+..++++||+++
T Consensus         1 ~~lg~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~~~h~~Iv~~~~~~~~~~~~~lv~e~~~~   80 (325)
T cd05602           1 KVIGKGSFGKVLLARHKAEEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLYFVLDYING   80 (325)
T ss_pred             CeeeeCCCeEEEEEEECCCCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHhCCCCCCCceeEEEEcCCeEEEEEeCCCC
Confidence            3689999999999985 467889999875421   12223344444 356778999999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... ........+.+++.++.+      +|+|+|+.||+   +..+..++++|||+++
T Consensus        81 ~~L~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nil---i~~~~~~kl~DfG~a~  144 (325)
T cd05602          81 GELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENIL---LDSQGHIVLTDFGLCK  144 (325)
T ss_pred             CcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeE---ECCCCCEEEccCCCCc
Confidence            999999886543 333444456677777776      57999999999   7888899999999987

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.83  E-value=2.3e-20  Score=138.83  Aligned_cols=96  Identities=29%  Similarity=0.465  Sum_probs=79.7

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCC-CCceeeeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQIN-YRNVVKLLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~   80 (167)
                      +....++|.+.+.||+|+||.||++.+.      .+..+|+|.+.... ....+.+.+|+.++..+. ||||+++++.+.
T Consensus        32 ~~~~~~~~~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l~~H~niv~~~~~~~  111 (401)
T cd05107          32 WEMPRDNLVLGRTLGSGAFGRVVEATAHGLSHSQSTMKVAVKMLKSTARSSEKQALMSELKIMSHLGPHLNIVNLLGACT  111 (401)
T ss_pred             ceecHHHeehhhhccCCCceeEEEEEEcCCCCCCCceEEEEEecCCCCChhHHHHHHHHHHHHHhcCCCCCeEEEEEEEc
Confidence            3445567888899999999999999842      24679999886542 233457889999999997 999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhc
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQ  104 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~  104 (167)
                      ..+..++|+||+++|+|.++++..
T Consensus       112 ~~~~~~iv~E~~~~g~L~~~l~~~  135 (401)
T cd05107         112 KGGPIYIITEYCRYGDLVDYLHRN  135 (401)
T ss_pred             cCCCcEEEEeccCCCcHHHHHHhc
Confidence            999999999999999999999753

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=99.83  E-value=2.9e-20  Score=137.21  Aligned_cols=137  Identities=18%  Similarity=0.149  Sum_probs=111.5

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----cce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----VPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----~~~   86 (167)
                      +|++.+.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++++...+     ..|
T Consensus         1 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~~   80 (372)
T cd07853           1 DVEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKMLCFFKHDNVLSALDILQPPHIDPFEEIY   80 (372)
T ss_pred             CCcccceeeeCCCEEEEEEEECCCCCEEEEEeccccccchHHHHHHHHHHHHHHhCCCCCcCCHhheecCCCccccceEE
Confidence            478889999999999999984 57899999987543  2233456889999999999999999999998776     789


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+.+ +|.+.+..... ........+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus        81 lv~e~~~~-~l~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil---i~~~~~~kL~Dfg~a~~  152 (372)
T cd07853          81 VVTELMQS-DLHKIIVSPQPLSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLL---VNSNCVLKICDFGLARV  152 (372)
T ss_pred             EEeecccc-CHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEE---ECCCCCEEeccccceee
Confidence            99999964 88888765432 444555567788888877      57999999999   88888999999998874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=99.83  E-value=4.3e-20  Score=131.39  Aligned_cols=130  Identities=18%  Similarity=0.160  Sum_probs=105.3

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|+||.||++.. .+++.+|+|.+.....   ...+.+..|+++++.++|||++++.+++...+..+++|||+++|+|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~g~L   80 (280)
T cd05608           1 LGKGGFGEVSACQMRATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAKVHSRFIVSLAYAFQTKTDLCLVMTIMNGGDL   80 (280)
T ss_pred             CCCCCceeEEEEEEccCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHhCCCCcEeeeeEEEcCCCeEEEEEeCCCCCCH
Confidence            68999999999984 5788999998754321   2234567899999999999999999999999999999999999999


Q ss_pred             HHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           98 SDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        98 ~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .+.+....     ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~~l~dfg~~~  145 (280)
T cd05608          81 RYHIYNVDEENPGFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVL---LDNDGNVRISDLGLAV  145 (280)
T ss_pred             HHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEEeeCccce
Confidence            88875421     2344455566778888777      57899999999   7788889999999886

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.83  E-value=1e-21  Score=132.62  Aligned_cols=144  Identities=19%  Similarity=0.213  Sum_probs=118.2

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC----
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET----   82 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~----   82 (167)
                      ++..+.++|.+.+.+|+|+|+.|+.+. .+++..+|+|++.....++.+..++|++..+.++|||++++++....+    
T Consensus        15 tv~In~~Ryri~~~LgeGGfsfv~LV~~~s~~~~YAlKkI~c~~~~~~e~~~rEid~~rkf~s~~vl~l~dh~l~~~~D~   94 (302)
T KOG2345|consen   15 TVIINNKRYRIQRLLGEGGFSFVDLVKGLSTGHLYALKKILCHSQEDIEEALREIDNHRKFNSPNVLRLVDHQLREEKDG   94 (302)
T ss_pred             cEEEcCceEEEeeeecCCCceeeeeecccCcccchhhheeeccchHHHHHHHHHHHHHHhhCCcchHHHHHHHHHhhccC
Confidence            345577899999999999999999999 788999999998877777888999999999999999999999887543    


Q ss_pred             -CcceEEEecCCCCCHHHHHhhcCc-chHhhHHH----HHHHHcCch--------hhhhcccchhHHHHhhhccCCcccc
Q 040049           83 -EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGF----ILSRRGGIP--------RLKRKKKKNKIWKQQLLKGLAPKRK  148 (167)
Q Consensus        83 -~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~----~~~i~~~l~--------~~h~~~~~~~~~~~~~~~~~~~~l~  148 (167)
                       ...|+++.|...|+|.+.+..... +...+...    .++++.|+.        |.|+|+||+||+   +.....+++.
T Consensus        95 ~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic~gL~~lH~~~~~yAH~DiKP~NIL---ls~~~~~vl~  171 (302)
T KOG2345|consen   95 KHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGICRGLEALHEKEPPYAHRDIKPANIL---LSDSGLPVLM  171 (302)
T ss_pred             ceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHhccCCcccccCCCcceeE---ecCCCceEEE
Confidence             459999999999999999997643 32333333    445555553        578999999998   6667899999


Q ss_pred             ccchhh
Q 040049          149 KFEEEK  154 (167)
Q Consensus       149 df~~~~  154 (167)
                      |||-+.
T Consensus       172 D~GS~~  177 (302)
T KOG2345|consen  172 DLGSAT  177 (302)
T ss_pred             eccCcc
Confidence            999876

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.83  E-value=7.2e-20  Score=131.66  Aligned_cols=138  Identities=14%  Similarity=0.144  Sum_probs=113.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+++|.+....   ......+.+|+.+++.++|||++++++.+..++..++++
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~   80 (305)
T cd05609           1 EDFETIKLISNGAYGAVYLVRHKETRQRFAMKKINKQNLILRNQIQQVFVERDILTFAENPFVVSMFCSFETKRHLCMVM   80 (305)
T ss_pred             CCceEeeEeecCCCeeEEEEEECCCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEecCCEEEEEE
Confidence            4688999999999999999984 568899999876442   233456788999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++..... +.......+.+++.++.+      +|+|+++.||+   +.....++++|||.++
T Consensus        81 e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIl---l~~~~~~~l~dfg~~~  149 (305)
T cd05609          81 EYVEGGDCATLLKNIGALPVDMARMYFAETVLALEYLHNYGIVHRDLKPDNLL---ITSMGHIKLTDFGLSK  149 (305)
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHEE---ECCCCCEEEeeCCCcc
Confidence            99999999999976543 334444455667777766      57899999999   7788889999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.83  E-value=5.3e-20  Score=131.35  Aligned_cols=140  Identities=21%  Similarity=0.346  Sum_probs=114.7

Q ss_pred             hcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..+|.+.+.+|+|+||.||++..      .++..+++|.+..........+.+|+.+++.++|||++++++++...+..+
T Consensus         4 ~~~~~~~~~lg~G~~~~v~~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (288)
T cd05093           4 RHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLI   83 (288)
T ss_pred             hHHeeeccccCCcCCeeEEeeEeccCCCCCcceEEEEEecCCcCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccE
Confidence            45788899999999999999873      134568888876555555667899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC--------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcc
Q 040049           87 LVYEYIPNGNLSDYLHEQN--------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~--------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      +++||+++++|.+++....              .+....+....+++.++.+      +|+|++|.|++   +.....++
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nil---i~~~~~~k  160 (288)
T cd05093          84 MVFEYMKHGDLNKFLRAHGPDAVLMAEGNRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCL---VGENLLVK  160 (288)
T ss_pred             EEEEcCCCCCHHHHHHHcCCccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEE---EccCCcEE
Confidence            9999999999999997543              1333444556677777776      57899999999   77888899


Q ss_pred             ccccchhhh
Q 040049          147 RKKFEEEKW  155 (167)
Q Consensus       147 l~df~~~~~  155 (167)
                      ++|||.++.
T Consensus       161 l~dfg~~~~  169 (288)
T cd05093         161 IGDFGMSRD  169 (288)
T ss_pred             eccCCcccc
Confidence            999999873

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.83  E-value=8.4e-20  Score=128.80  Aligned_cols=140  Identities=24%  Similarity=0.385  Sum_probs=114.3

Q ss_pred             hcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|.+.+.||+|+||.||+|.+.    +...+++|.+.... ......+.+|+..+..++|||++++++.+...+..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~i   82 (266)
T cd05033           3 PSYVTIEKVIGGGEFGEVCRGRLKLPGKKEIDVAIKTLKAGSSDKQRLDFLTEASIMGQFDHPNIIRLEGVVTKSRPVMI   82 (266)
T ss_pred             hHHceeeeEecCCccceEEEEEEccCCCCcceEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCcceEeEEEecCCceEE
Confidence            457889999999999999999853    24578999876443 3344568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~di~p~nil---i~~~~~~~l~dfg~~~~  155 (266)
T cd05033          83 ITEYMENGSLDKFLRENDGKFTVGQLVGMLRGIASGMKYLSEMNYVHRDLAARNIL---VNSNLVCKVSDFGLSRR  155 (266)
T ss_pred             EEEcCCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEE---EcCCCCEEECccchhhc
Confidence            9999999999999876432  344455556677777766      57899999999   78888899999999874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.83  E-value=8e-20  Score=131.18  Aligned_cols=140  Identities=22%  Similarity=0.279  Sum_probs=114.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+.... ......+.+|+..++.++||||+++++++..++..++++
T Consensus         4 ~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~nI~~~~~~~~~~~~~~lv~   83 (301)
T cd07873           4 KLETYIKLDKLGEGTYATVYKGRSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVF   83 (301)
T ss_pred             cccceEEeeEeccCcCEEEEEEEEcCCCcEEEEEEEecccccCchhHHHHHHHHHHhcCCCCcceEEEEEecCCeEEEEE
Confidence            346799999999999999999984 478899999876442 333456778999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++ +|.+.+.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        84 e~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~dfg~~~~  153 (301)
T cd07873          84 EYLDK-DLKQYLDDCGNSINMHNVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLL---INERGELKLADFGLARA  153 (301)
T ss_pred             ecccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEE---ECCCCcEEECcCcchhc
Confidence            99975 89888876432  334445556677777776      57899999999   78888999999998864

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.83  E-value=6.2e-20  Score=129.57  Aligned_cols=140  Identities=24%  Similarity=0.392  Sum_probs=112.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC-C---CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+|.+.+.||+|+||.||++... +   +..+++|.+.... ......+.+|+.++..++|||++++++++..++..++
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   82 (267)
T cd05066           3 ASCIKIEKVIGAGEFGEVCSGRLKLPGKREIPVAIKTLKAGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSKPVMI   82 (267)
T ss_pred             HHHeEeeeeecccCCCceEEEEEecCCCCceEEEEEECCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEecCCccEE
Confidence            356888999999999999999742 2   3368888875432 2334678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        83 v~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~h~dlkp~nil---i~~~~~~~l~dfg~~~~  155 (267)
T cd05066          83 VTEYMENGSLDAFLRKHDGQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNIL---VNSNLVCKVSDFGLSRV  155 (267)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEeehhhchhcEE---ECCCCeEEeCCCCcccc
Confidence            9999999999999986532  333445556677777766      57899999999   77788899999998874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.83  E-value=6.1e-20  Score=130.26  Aligned_cols=141  Identities=23%  Similarity=0.370  Sum_probs=111.4

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ...++|++.+.||+|++|.||.+...      ++..+|+|.+.... ......+.+|+.+++.++|||++++++++...+
T Consensus         3 ~~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~~~iv~~~~~~~~~~   82 (277)
T cd05062           3 VAREKITMSRELGQGSFGMVYEGIAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVVSQGQ   82 (277)
T ss_pred             ccHHHceeeeeeccccCCeEEEEEeccCCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            45678999999999999999998632      24679999875432 233456889999999999999999999999889


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcc-----------hHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNED-----------FVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~-----------~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      ..++++||+++++|.+++.+....           .......+.+++.++.+      +|+|+++.|++   +..+..++
T Consensus        83 ~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil---~~~~~~~~  159 (277)
T cd05062          83 PTLVIMELMTRGDLKSYLRSLRPEMENNPVQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCM---VAEDFTVK  159 (277)
T ss_pred             CeEEEEecCCCCCHHHHHHHcCccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEE---EcCCCCEE
Confidence            999999999999999998764321           11222334566777766      57899999999   77888899


Q ss_pred             ccccchhh
Q 040049          147 RKKFEEEK  154 (167)
Q Consensus       147 l~df~~~~  154 (167)
                      ++|||+++
T Consensus       160 l~dfg~~~  167 (277)
T cd05062         160 IGDFGMTR  167 (277)
T ss_pred             ECCCCCcc
Confidence            99999876

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.83  E-value=1.1e-19  Score=127.86  Aligned_cols=139  Identities=20%  Similarity=0.255  Sum_probs=114.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-----ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-----GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-----~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ++|.+.+.||+|++|.||.+.. .+++.+++|.+.....     .....+.+|+.+++.++||||+++++++..++..++
T Consensus         2 ~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~   81 (263)
T cd06625           2 TNWRRGKLLGQGAFGRVYLCYDVDTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKNLQHERIVQYYGCLRDDETLSI   81 (263)
T ss_pred             CcccccceecCCCceEEEEEEEcCCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHhCCCCCeeeeEEEEccCCeEEE
Confidence            4688999999999999999984 5789999998754321     123467889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+.+..... ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        82 v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil---v~~~~~~~l~dfg~~~~  153 (263)
T cd06625          82 FMEYMPGGSVKDQLKAYGALTETVTRKYTRQILEGVEYLHSNMIVHRDIKGANIL---RDSAGNVKLGDFGASKR  153 (263)
T ss_pred             EEEECCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEeeccccee
Confidence            9999999999999886543 344455556677777766      57899999999   78888899999998863

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.83  E-value=8.9e-20  Score=127.93  Aligned_cols=140  Identities=25%  Similarity=0.401  Sum_probs=117.2

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.+|+|++|.||++.. .++.+++|.+..... ..+.+.+|+.+++.++|+|++++++++.+.+..++++||
T Consensus         4 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~v~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   81 (256)
T cd05039           4 NSKELKLGATIGKGEFGDVMLGDY-RGQKVAVKCLKDDST-AAQAFLAEASVMTTLRHPNLVQLLGVVLQGNPLYIVTEY   81 (256)
T ss_pred             ChhhccceeeeecCCCceEEEEEe-cCcEEEEEEeccchh-HHHHHHHHHHHHHhcCCcceeeeEEEEcCCCCeEEEEEe
Confidence            356789999999999999999985 478899998865433 457789999999999999999999999988899999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +++++|.+++....   ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nil---i~~~~~~~l~d~g~~~~~  152 (256)
T cd05039          82 MAKGSLVDYLRSRGRAVITLAQQLGFALDVCEGMEYLEEKNFVHRDLAARNVL---VSEDLVAKVSDFGLAKEA  152 (256)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCccchhcccceEE---EeCCCCEEEccccccccc
Confidence            99999999998654   2445556666777777766      57899999999   777888999999988753

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.83  E-value=2.6e-20  Score=130.66  Aligned_cols=136  Identities=26%  Similarity=0.300  Sum_probs=114.3

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccH--HHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKL--DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~--~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      |++.+.||+|+||.||++.. .+++.+|+|.+........  ....+|+..+..++||||+++.+++...+..++++|++
T Consensus         1 y~~~~~lg~G~~g~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~v~~~~   80 (260)
T PF00069_consen    1 YRLVKKLGSGGFGTVYKAKNKKNGQKVAVKIIDKSEIEEEEREENIREIKILRRLRHPNIVQILDVFQDDNYLYIVMEYC   80 (260)
T ss_dssp             EEEEEEEEEESSEEEEEEEETTTTEEEEEEEEESTTHHHHHHHHHHHHHHHHHHHTBTTBCHEEEEEEESSEEEEEEEEE
T ss_pred             CEEeEEEEeCCCEEEEEEEECCCCeEEEEEEeccccccccccchhhhhhhcccccccccccccccccccccccccccccc
Confidence            67789999999999999995 4677899999876544322  23456899999999999999999999999999999999


Q ss_pred             CCCCHHHHHhh-cCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHE-QNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~-~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++|.+++.. ........+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+.
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~L~~Lh~~~i~H~dikp~NIl---~~~~~~~~l~Dfg~~~  146 (260)
T PF00069_consen   81 PGGSLQDYLQKNKPLSEEEILKIAYQILEALAYLHSKGIVHRDIKPENIL---LDENGEVKLIDFGSSV  146 (260)
T ss_dssp             TTEBHHHHHHHHSSBBHHHHHHHHHHHHHHHHHHHHTTEEESSBSGGGEE---ESTTSEEEESSGTTTE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccccccccc
Confidence            99999999983 3346666777788888888774      7899999999   8888889999999975

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.83  E-value=5e-20  Score=146.98  Aligned_cols=149  Identities=15%  Similarity=0.176  Sum_probs=114.5

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec--
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE--   81 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--   81 (167)
                      .+.....++|.+.+.||+|+||.||++.. .++..+++|.+...  .......+..|+.++..++||||++++++|..  
T Consensus         6 ~~ge~~l~~YeIl~kLG~GgFGtVYLAkdk~tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~L~HPNIVrl~d~f~de~   85 (1021)
T PTZ00266          6 DDGESRLNEYEVIKKIGNGRFGEVFLVKHKRTQEFFCWKAISYRGLKEREKSQLVIEVNVMRELKHKNIVRYIDRFLNKA   85 (1021)
T ss_pred             cCCccccCCEEEEEEEecCCCeEEEEEEECCCCeEEEEEEEeccccCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEecC
Confidence            33445667999999999999999999994 56788899987543  33345678899999999999999999998854  


Q ss_pred             CCcceEEEecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh-------------hhhcccchhHHHHh-----
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR-------------LKRKKKKNKIWKQQ-----  138 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~-------------~h~~~~~~~~~~~~-----  138 (167)
                      ...+|+||||+++|+|.++|...     ..+....+..+.+++.+|.+             +|+|+||.|||+..     
T Consensus        86 ~~~lyIVMEY~~gGSL~~lL~k~~~~~g~L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~l  165 (1021)
T PTZ00266         86 NQKLYILMEFCDAGDLSRNIQKCYKMFGKIEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHI  165 (1021)
T ss_pred             CCEEEEEEeCCCCCcHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCcccc
Confidence            35689999999999999999753     12445566667777777765             45789999999421     


Q ss_pred             ---------hhccCCccccccchhhh
Q 040049          139 ---------LLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       139 ---------~~~~~~~~l~df~~~~~  155 (167)
                               ......++|+|||+++.
T Consensus       166 g~i~~~~~n~ng~~iVKLsDFGlAr~  191 (1021)
T PTZ00266        166 GKITAQANNLNGRPIAKIGDFGLSKN  191 (1021)
T ss_pred             ccccccccccCCCCceEEccCCcccc
Confidence                     01123479999998874

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=2e-21  Score=141.26  Aligned_cols=144  Identities=22%  Similarity=0.253  Sum_probs=117.4

Q ss_pred             HhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc-------ccHHHHHHHHHHHhcCCCCceeeeeeeee-
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK-------GKLDEFINKVVILSQINYRNVVKLLGCCL-   80 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~-------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~-   80 (167)
                      ....++|.++.+||+|+|+.||++. ....+.+|+|+-...+.       .-.....+|.++.+.++||-|+++++++. 
T Consensus       459 ptLn~RYLlLhLLGrGGFSEVyKAFDl~EqRYvAvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfsl  538 (775)
T KOG1151|consen  459 PTLNDRYLLLHLLGRGGFSEVYKAFDLTEQRYVAVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSL  538 (775)
T ss_pred             cchHHHHHHHHHhccccHHHHHHhcccchhheeeEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeee
Confidence            3455789999999999999999998 44677889987543322       12345788999999999999999999986 


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhcc---CCcccc
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLKG---LAPKRK  148 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~~---~~~~l~  148 (167)
                      +.+.++-|+|||+|.+|.-++++... ......+.+++|+.+|.|        +|-|+||.||+   +..+   +..||+
T Consensus       539 DtdsFCTVLEYceGNDLDFYLKQhklmSEKEARSIiMQiVnAL~YLNEikpPIIHYDLKPgNIL---Lv~GtacGeIKIT  615 (775)
T KOG1151|consen  539 DTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEARSIIMQIVNALKYLNEIKPPIIHYDLKPGNIL---LVNGTACGEIKIT  615 (775)
T ss_pred             ccccceeeeeecCCCchhHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCCCeeeeccCCccEE---EecCcccceeEee
Confidence            45678899999999999999998754 556677789999999988        69999999999   6555   567999


Q ss_pred             ccchhhhh
Q 040049          149 KFEEEKWR  156 (167)
Q Consensus       149 df~~~~~~  156 (167)
                      |||+++.+
T Consensus       616 DFGLSKIM  623 (775)
T KOG1151|consen  616 DFGLSKIM  623 (775)
T ss_pred             ecchhhhc
Confidence            99999843

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.82  E-value=7.1e-21  Score=133.10  Aligned_cols=135  Identities=17%  Similarity=0.173  Sum_probs=113.9

Q ss_pred             ceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           20 IVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      +.||+|+++.|-.|. ..+|.++|||++.......+.+..+|++++.+. .|+||++++++|++...+|+|+|.+.||+|
T Consensus        84 e~LGeGAyasVqtcv~i~t~~EYAVKiidKq~gHsR~RvfREVe~f~~Cqgh~nilqLiefFEdd~~FYLVfEKm~GGpl  163 (463)
T KOG0607|consen   84 ELLGEGAYASVQTCVSIQTGKEYAVKIIDKQPGHSRSRVFREVETFYQCQGHKNILQLIEFFEDDTRFYLVFEKMRGGPL  163 (463)
T ss_pred             HHhcCccceeeeeeeeeccchhhhhhhhhcCCchHHHHHHHHHHHHHHhcCCccHHHHHHHhcccceEEEEEecccCchH
Confidence            689999999999998 789999999999877667778899999998877 599999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .+.|+++.. ........+..|+.+|.++      |||+||+||++..-.+-.-+|||||.+..
T Consensus       164 LshI~~~~~F~E~EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgS  227 (463)
T KOG0607|consen  164 LSHIQKRKHFNEREASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGS  227 (463)
T ss_pred             HHHHHHhhhccHHHHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeecccccc
Confidence            999998764 3333444456677777775      69999999986655555677999998865

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.82  E-value=1e-19  Score=129.53  Aligned_cols=139  Identities=19%  Similarity=0.326  Sum_probs=110.5

Q ss_pred             cCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ++|++.+.||+|+||.||+|..     .++..+++|.+.... ......+.+|+.+++.++|||++++++++...+..++
T Consensus         5 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l   84 (283)
T cd05090           5 SAVRFMEELGECAFGKIYKGHLYLPGMDHAQLVAIKTLKDINNPQQWGEFQQEASLMAELHHPNIVCLLGVVTQEQPVCM   84 (283)
T ss_pred             hhceeeeeccccCCcceEEEEEecCCCCCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCCeeeEEEEEecCCceEE
Confidence            5688889999999999999973     245788999876433 2334568889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc------------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           88 VYEYIPNGNLSDYLHEQNE------------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      ++||+++++|.+++.....                  ..........+++.++.+      +|+|+++.|++   +....
T Consensus        85 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nil---i~~~~  161 (283)
T cd05090          85 LFEYLNQGDLHEFLIMRSPHSDVGCSSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNIL---IGEQL  161 (283)
T ss_pred             EEEcCCCCcHHHHHHhcCCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEE---EcCCC
Confidence            9999999999999864321                  112223345667777766      57899999999   78888


Q ss_pred             Cccccccchhhh
Q 040049          144 APKRKKFEEEKW  155 (167)
Q Consensus       144 ~~~l~df~~~~~  155 (167)
                      .++++|||+++.
T Consensus       162 ~~kl~dfg~~~~  173 (283)
T cd05090         162 HVKISDLGLSRE  173 (283)
T ss_pred             cEEecccccccc
Confidence            899999999873

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.82  E-value=6.5e-20  Score=129.55  Aligned_cols=140  Identities=21%  Similarity=0.401  Sum_probs=113.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CC---cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DE---RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~---~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|.+.+.||+|+||.||+|... ++   ..+++|.+... .......+..|+..++.++|||++++.+++...+..++
T Consensus         3 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~l   82 (269)
T cd05065           3 VSCVKIEEVIGAGEFGEVCRGRLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNIIHLEGVVTKSRPVMI   82 (269)
T ss_pred             hHHeEEEeEecCCCCCeEEEEEEecCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCcCcceEEEEECCCCceEE
Confidence            356888999999999999999843 33   36899987643 33445678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||++++
T Consensus        83 v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~~l~~al~~lH~~g~~H~dl~p~nil---i~~~~~~kl~dfg~~~~  155 (269)
T cd05065          83 ITEFMENGALDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLSEMNYVHRDLAARNIL---VNSNLVCKVSDFGLSRF  155 (269)
T ss_pred             EEecCCCCcHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccChheEE---EcCCCcEEECCCccccc
Confidence            9999999999999886532  333445556677777766      57899999999   77888899999998874

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.82  E-value=2.9e-20  Score=132.41  Aligned_cols=138  Identities=18%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|++.+.||+|+||.||++.. .++..+++|.+... .......+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (286)
T cd06622           1 DEIEVLDELGKGNYGSVYKVLHRPTGVTMAMKEIRLELDESKFNQIIMELDILHKAVSPYIVDFYGAFFIEGAVYMCMEY   80 (286)
T ss_pred             ChhhhhhhhcccCCeEEEEEEEcCCCcEEEEEEeecccCHHHHHHHHHHHHHHHhcCCCcHHhhhhheecCCeEEEEEee
Confidence            4688899999999999999985 47899999987543 333346788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc----CcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQ----NEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~----~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+++...    ............+++.++.+       +|+|+++.|++   +.....++++|||.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~  151 (286)
T cd06622          81 MDAGSLDKLYAGGVATEGIPEDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVL---VNGNGQVKLCDFGVSG  151 (286)
T ss_pred             cCCCCHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEE---ECCCCCEEEeecCCcc
Confidence            9999999888764    22333444455666666655       57899999999   7778889999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.82  E-value=1.1e-19  Score=129.19  Aligned_cols=135  Identities=19%  Similarity=0.207  Sum_probs=111.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|++.+.||+|++|.||++.. .+++.+++|.+... .......+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   80 (279)
T cd06619           1 QDIQYQEILGHGNGGTVYKAYHLLTRRILAVKVIPLDITVELQKQIMSELEILYKCDSPYIIGFYGAFFVENRISICTEF   80 (279)
T ss_pred             CcchheeeeccCCCeEEEEEEEcCCCcEEEEEEEecCCChHHHHHHHHHHHHHHhCCCCCeeeEEEEEEECCEEEEEEec
Confidence            4688889999999999999984 57889999987543 223345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.....   .+.......+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        81 ~~~~~l~~~~~---~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---l~~~~~~~l~dfg~~~  143 (279)
T cd06619          81 MDGGSLDVYRK---IPEHVLGRIAVAVVKGLTYLWSLKILHRDVKPSNML---VNTRGQVKLCDFGVST  143 (279)
T ss_pred             CCCCChHHhhc---CCHHHHHHHHHHHHHHHHHHHHCCEeeCCCCHHHEE---ECCCCCEEEeeCCcce
Confidence            99999865421   2344455667778888866      57899999999   7888899999999886

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.82  E-value=1.5e-20  Score=140.09  Aligned_cols=125  Identities=24%  Similarity=0.341  Sum_probs=107.0

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHH
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLS   98 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~   98 (167)
                      ++-||+|+-|.||+|.+ .++.||||+++..+.       .+++.++.++||||+.+.|+|....-++|+||||+.|-|.
T Consensus       129 LeWlGSGaQGAVF~Grl-~netVAVKKV~elkE-------TdIKHLRkLkH~NII~FkGVCtqsPcyCIiMEfCa~GqL~  200 (904)
T KOG4721|consen  129 LEWLGSGAQGAVFLGRL-HNETVAVKKVRELKE-------TDIKHLRKLKHPNIITFKGVCTQSPCYCIIMEFCAQGQLY  200 (904)
T ss_pred             hhhhccCcccceeeeec-cCceehhHHHhhhhh-------hhHHHHHhccCcceeeEeeeecCCceeEEeeeccccccHH
Confidence            45689999999999986 578899998764443       5788899999999999999998888899999999999999


Q ss_pred             HHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           99 DYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        99 ~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ..++.... ...+......+|+.|+.|      +|||+|..||+   |.-+..+||+|||-++
T Consensus       201 ~VLka~~~itp~llv~Wsk~IA~GM~YLH~hKIIHRDLKSPNiL---Is~~d~VKIsDFGTS~  260 (904)
T KOG4721|consen  201 EVLKAGRPITPSLLVDWSKGIAGGMNYLHLHKIIHRDLKSPNIL---ISYDDVVKISDFGTSK  260 (904)
T ss_pred             HHHhccCccCHHHHHHHHHHhhhhhHHHHHhhHhhhccCCCceE---eeccceEEeccccchH
Confidence            99997653 445555667788888888      57999999999   8888899999999876

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.82  E-value=1.4e-19  Score=127.63  Aligned_cols=139  Identities=18%  Similarity=0.267  Sum_probs=113.7

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++. ..++..+++|.+...   .......+.+|+.+++.++|||++++++.+.+.+..++++
T Consensus         2 ~~~~i~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08228           2 ANFQIEKKIGRGQFSEVYRATCLLDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQLNHPNVIKYLDSFIEDNELNIVL   81 (267)
T ss_pred             cceeeeeeeccCCCeeEEEEEEeCCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHhCCCcceeeeeeeEEECCeEEEEE
Confidence            578999999999999999998 457899999976542   2333456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++....     .+....+..+.+++.++.++      |+|+++.|++   +.....++++|||.+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil---~~~~~~~~l~d~g~~~~  155 (267)
T cd08228          82 ELADAGDLSQMIKYFKKQKRLIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVF---ITATGVVKLGDLGLGRF  155 (267)
T ss_pred             EecCCCcHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEE---EcCCCCEEECcccccee
Confidence            9999999998886422     13334455667788888774      6899999999   77788899999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=1.3e-19  Score=127.28  Aligned_cols=140  Identities=20%  Similarity=0.231  Sum_probs=119.1

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.+|+|++|.||++.. .++..+++|.+..........+.+|+.+++.++|||++++++.+...+.+++++||
T Consensus         2 ~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~l~~e~   81 (262)
T cd06613           2 QEDYELIQRIGSGTYGDVYKARDIATGELVAIKVIKLEPGDDFEIIQQEISMLKECRHPNIVAYFGSYLRRDKLWIVMEY   81 (262)
T ss_pred             ccceEEEEEecCCCceEEEEeEecCCCCEEEEEEEEcCchhhHHHHHHHHHHHHhCCCCChhceEEEEEeCCEEEEEEeC
Confidence            36788999999999999999984 46788999988766555667889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhc-C-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQ-N-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~-~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++... . ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        82 ~~~~~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~---i~~~~~~~l~d~g~~~~  150 (262)
T cd06613          82 CGGGSLQDIYQVTRGPLSELQIAYVCRETLKGLAYLHETGKIHRDIKGANIL---LTEDGDVKLADFGVSAQ  150 (262)
T ss_pred             CCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCceecCCChhhEE---ECCCCCEEECccccchh
Confidence            9999999988765 2 2445556667778888777      57899999999   78888899999998774

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.82  E-value=8.3e-20  Score=131.30  Aligned_cols=141  Identities=23%  Similarity=0.372  Sum_probs=111.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCc--EEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADER--IVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~--~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|++.+.||+|+||.||+|.. .++.  .+++|.+.... ......+.+|+.++..+ +|||++++++++...+..+
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~a~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l~~h~~iv~~~~~~~~~~~~~   84 (303)
T cd05088           5 EWNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLY   84 (303)
T ss_pred             chhhceeeeeecCCCCceEEEEEEccCCceeeEEEEEecccCCHHHHHHHHHHHHHHHHhcCCCCcceEEEEECCCCCce
Confidence            346789999999999999999985 3454  45666655332 23345678899999999 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      +++||+++++|.+++.....                 .....+..+.+++.++.+      +|+|++++|++   +..+.
T Consensus        85 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nil---i~~~~  161 (303)
T cd05088          85 LAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL---VGENY  161 (303)
T ss_pred             EEEEeCCCCcHHHHHHhcccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEE---ecCCC
Confidence            99999999999999975431                 223344556677777776      57899999999   77888


Q ss_pred             Cccccccchhhh
Q 040049          144 APKRKKFEEEKW  155 (167)
Q Consensus       144 ~~~l~df~~~~~  155 (167)
                      .++++|||+++.
T Consensus       162 ~~kl~dfg~~~~  173 (303)
T cd05088         162 VAKIADFGLSRG  173 (303)
T ss_pred             cEEeCccccCcc
Confidence            999999998863

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.82  E-value=5.8e-21  Score=142.77  Aligned_cols=138  Identities=23%  Similarity=0.301  Sum_probs=111.8

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHH---HHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLD---EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~---~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      -|.-++-||.|+||.||-++ ..+.+.||+|++..+.....+   .++.|++.++.++|||++.+.|+|......|+|||
T Consensus        27 lf~dLrEIGHGSFGAVYfArd~~n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~HPntieYkgCyLre~TaWLVME  106 (948)
T KOG0577|consen   27 LFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLRHPNTIEYKGCYLREHTAWLVME  106 (948)
T ss_pred             HHHHHHHhcCCccceeEEeeccCccceeeeeeccccccccHHHHHHHHHHHHHHHhccCCCcccccceeeccchHHHHHH
Confidence            45566789999999999999 568899999998776554444   46789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ||-| +..+++.-...  ..........+.+.||+|      +|+|+|.+||+   +...+.+|++|||-|...
T Consensus       107 YClG-SAsDlleVhkKplqEvEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNIL---Lse~g~VKLaDFGSAsi~  176 (948)
T KOG0577|consen  107 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNRIHRDIKAGNIL---LSEPGLVKLADFGSASIM  176 (948)
T ss_pred             HHhc-cHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhhHHhhhccccceE---ecCCCeeeeccccchhhc
Confidence            9966 77777764432  333444455667777777      57999999999   888899999999988754

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=99.82  E-value=2.2e-21  Score=134.89  Aligned_cols=136  Identities=24%  Similarity=0.372  Sum_probs=113.8

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +-|.++.+||+|+||.||++. ..+|+.+|+|.+..  ..+.+....|+.++++.+.|++++++|.|.-...+|+|||||
T Consensus        33 EVFDi~~KLGEGSYGSV~KAIH~EsG~v~AIK~VPV--~sDLQEIIKEISIMQQC~S~yVVKYYGSYFK~sDLWIVMEYC  110 (502)
T KOG0574|consen   33 EVFDIVGKLGEGSYGSVHKAIHRESGHVLAIKKVPV--DTDLQEIIKEISIMQQCKSKYVVKYYGSYFKHSDLWIVMEYC  110 (502)
T ss_pred             HHHHHHHHhcCCcchHHHHHHHhccCcEEEEEecCc--cchHHHHHHHHHHHHHcCCchhhhhhhhhccCCceEeehhhc
Confidence            357888999999999999998 45899999998764  456789999999999999999999999998889999999999


Q ss_pred             CCCCHHHHHhhcCcchH--hhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHEQNEDFV--KDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~--~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      --|+..+.++-++.+..  .........+.||.|      +|||+|.+||+   +..++.+|++|||-|.
T Consensus       111 GAGSiSDI~R~R~K~L~E~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNIL---LNT~G~AKLADFGVAG  177 (502)
T KOG0574|consen  111 GAGSISDIMRARRKPLSEQEISAVLRDTLKGLQYLHDLKKIHRDIKAGNIL---LNTDGIAKLADFGVAG  177 (502)
T ss_pred             CCCcHHHHHHHhcCCccHHHHHHHHHHHHhHHHHHHHHHHHHhhcccccEE---Ecccchhhhhhccccc
Confidence            98999999997654322  222223345667766      68999999999   8888999999999876

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.82  E-value=8.9e-20  Score=130.18  Aligned_cols=141  Identities=22%  Similarity=0.334  Sum_probs=111.2

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ...++|.+.+.||+|+||.||+|...      .+..+++|.+.... ......+.+|+..++.++|||++++++.+...+
T Consensus         3 ~~~~~~~i~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~   82 (288)
T cd05061           3 VSREKITLLRELGQGSFGMVYEGNARDIIKGEAETRVAVKTVNESASLRERIEFLNEASVMKGFTCHHVVRLLGVVSKGQ   82 (288)
T ss_pred             ccHHHceeeeeecCCCCcEEEEEEEeccCCCCcceEEEEEECCCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEcCCC
Confidence            45678999999999999999998632      24578999775432 223345778999999999999999999999899


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcc-----------hHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNED-----------FVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~-----------~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      ..++++||+++|+|.+++......           .........+++.++.+      +|+|+++.|++   +..+..++
T Consensus        83 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nil---i~~~~~~~  159 (288)
T cd05061          83 PTLVVMELMAHGDLKSYLRSLRPEAENNPGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCM---VAHDFTVK  159 (288)
T ss_pred             CcEEEEeCCCCCCHHHHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEE---EcCCCcEE
Confidence            999999999999999999864311           11223345567777766      57899999999   78888899


Q ss_pred             ccccchhh
Q 040049          147 RKKFEEEK  154 (167)
Q Consensus       147 l~df~~~~  154 (167)
                      ++|||.++
T Consensus       160 L~Dfg~~~  167 (288)
T cd05061         160 IGDFGMTR  167 (288)
T ss_pred             ECcCCccc
Confidence            99999887

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.82  E-value=6.2e-20  Score=131.44  Aligned_cols=140  Identities=21%  Similarity=0.371  Sum_probs=111.9

Q ss_pred             hcCCcccceecccCceeEEEEEeC-----------------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-----------------DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVK   74 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-----------------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~   74 (167)
                      .++|++.+.||+|+||.||++...                 ++..+++|.+... .......+.+|+.+++.++|||+++
T Consensus         4 ~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~   83 (296)
T cd05095           4 RKRLTFKEKLGEGQFGEVHLCEAEGMEKFMDKDFSLDVSGNQPVLVAVKMLREDANKNARNDFLKEIKIMSRLKDPNIIR   83 (296)
T ss_pred             hhhceeeeeccCCCCCeEEecccccccccccccccccCCCCceeEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcce
Confidence            457999999999999999987521                 2346888887643 2334567889999999999999999


Q ss_pred             eeeeeecCCcceEEEecCCCCCHHHHHhhcCcc------------hHhhHHHHHHHHcCchh------hhhcccchhHHH
Q 040049           75 LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED------------FVKDVGFILSRRGGIPR------LKRKKKKNKIWK  136 (167)
Q Consensus        75 l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~------------~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~  136 (167)
                      +++++...+..++++||+++++|.+++......            ....+....+++.++.+      +|+|+++.|++ 
T Consensus        84 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nil-  162 (296)
T cd05095          84 LLAVCITSDPLCMITEYMENGDLNQFLSRHEPQEAAEKADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCL-  162 (296)
T ss_pred             EEEEEecCCccEEEEEeCCCCcHHHHHHhcCcccccccccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEE-
Confidence            999999999999999999999999999864321            12344556677777766      57899999999 


Q ss_pred             HhhhccCCccccccchhhh
Q 040049          137 QQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~~  155 (167)
                        +..+..++++|||.++.
T Consensus       163 --i~~~~~~~l~dfg~~~~  179 (296)
T cd05095         163 --VGKNYTIKIADFGMSRN  179 (296)
T ss_pred             --EcCCCCEEeccCccccc
Confidence              77788899999999873

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.82  E-value=8e-20  Score=130.12  Aligned_cols=140  Identities=16%  Similarity=0.178  Sum_probs=114.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +.++|.+.+.||+|++|.||++.. .++..+++|..... .......+.+|+++++.++|||++++++.+...+..++++
T Consensus         3 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (284)
T cd06620           3 RNEDLETISDLGAGNGGSVSKVKHIPTGTVMAKKVVHIGAKSSVRKQILRELQIMHECRSPYIVSFYGAFLNENNICMCM   82 (284)
T ss_pred             cHHHHHHHHHcCCCCCeEEEEEEEcCCCcEEEEEEEEecCcchHHHHHHHHHHHHHHcCCCCcceEeeeEecCCEEEEEE
Confidence            346788999999999999999984 57888999976543 2344567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++...+. ..........+++.++.+       +|+++++.|++   +.+...++++|||++.
T Consensus        83 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil---~~~~~~~~l~d~gl~~  152 (284)
T cd06620          83 EFMDCGSLDRIYKKGGPIPVEILGKIAVAVVEGLTYLYNVHRIMHRDIKPSNIL---VNSRGQIKLCDFGVSG  152 (284)
T ss_pred             ecCCCCCHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHhcCeeccCCCHHHEE---ECCCCcEEEccCCccc
Confidence            99999999998876542 344444556667666655       56889999999   7888889999999876

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.82  E-value=9.6e-20  Score=129.55  Aligned_cols=138  Identities=18%  Similarity=0.167  Sum_probs=115.0

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      .|++.+.||+|+||.||++.. .++..+++|.+........+.+.+|+.+++.++|||++++++.+...+..++++||++
T Consensus         6 ~~~i~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~~v~e~~~   85 (282)
T cd06643           6 FWEIIGELGDGAFGKVYKAQNKETGVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFCA   85 (282)
T ss_pred             HHHHHhhcccCCCeEEEEEEECCCCeEEEEEEeCCCCHHHHHHHHHHHHHHHHCCCCCeeeEEEEEeeCCEEEEEEEecC
Confidence            367788999999999999984 4678889998865555566778899999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           94 NGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|...+....  ......+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+..
T Consensus        86 ~~~l~~~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~i~H~dlkp~nil---i~~~~~~kl~dfg~~~~  152 (282)
T cd06643          86 GGAVDAVMLELERPLTEPQIRVVCKQTLEALNYLHENKIIHRDLKAGNIL---FTLDGDIKLADFGVSAK  152 (282)
T ss_pred             CCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEE---EccCCCEEEcccccccc
Confidence            999988876532  24445566677888888774      7899999999   77888899999998764

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=1.4e-20  Score=142.87  Aligned_cols=137  Identities=19%  Similarity=0.327  Sum_probs=115.5

Q ss_pred             cCCcccceecccCceeEEEEEeC--CC--cEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLA--DE--RIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~--~~--~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ++..+.+.||+|+||.|++|.|.  +|  -.||||++...... ....|.+|+.+|..++|||+++|+|...+ ..+.+|
T Consensus       110 e~i~l~e~LG~GsFgvV~rg~Wt~psgk~V~VAVKclr~d~l~~~mddflrEas~M~~L~H~hliRLyGvVl~-qp~mMV  188 (1039)
T KOG0199|consen  110 EQIKLYELLGEGSFGVVKRGTWTQPSGKHVNVAVKCLRDDSLNAIMDDFLREASHMLKLQHPHLIRLYGVVLD-QPAMMV  188 (1039)
T ss_pred             HHHHHHHHhcCcceeeEeeccccCCCCcEEeEEEEeccCCccchhHHHHHHHHHHHHhccCcceeEEeeeecc-chhhHH
Confidence            34566788999999999999864  34  45899998765444 66789999999999999999999999987 678899


Q ss_pred             EecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.++.|+|.+.+++...   ....-..+..||+.+++|      +|||+..-|++   +..--++||+|||+.+
T Consensus       189 ~ELaplGSLldrLrka~~~~llv~~Lcdya~QiA~aM~YLeskrlvHRDLAARNll---lasprtVKI~DFGLmR  260 (1039)
T KOG0199|consen  189 FELAPLGSLLDRLRKAKKAILLVSRLCDYAMQIAKAMQYLESKRLVHRDLAARNLL---LASPRTVKICDFGLMR  260 (1039)
T ss_pred             hhhcccchHHHHHhhccccceeHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhe---ecccceeeeeccccee
Confidence            999999999999998332   234456778999999988      69999999999   7778899999999988

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.82  E-value=1.1e-19  Score=130.09  Aligned_cols=139  Identities=22%  Similarity=0.242  Sum_probs=117.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||++.. .++..+++|.+........+.+.+|+.+++.++|||++++++.+...+..++|+||
T Consensus        18 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~lv~e~   97 (293)
T cd06647          18 KKKYTRFEKIGQGASGTVYTAIDVATGQEVAIKQMNLQQQPKKELIINEILVMRENKHPNIVNYLDSYLVGDELWVVMEY   97 (293)
T ss_pred             hhhceeeeEecCCCCeEEEEEEEcCCCCEEEEEEeccccchHHHHHHHHHHHHhhcCCCCeeehhheeeeCCcEEEEEec
Confidence            46889999999999999999984 47788999987655445556788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+++.+...........+.+++.++.+      +|+|+++.|++   +.++..++++|||.+.
T Consensus        98 ~~~~~L~~~~~~~~l~~~~~~~i~~~l~~al~~LH~~gi~H~dL~p~Nil---i~~~~~~kL~dfg~~~  163 (293)
T cd06647          98 LAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL---LGMDGSVKLTDFGFCA  163 (293)
T ss_pred             CCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCEeeccCCHHHEE---EcCCCCEEEccCccee
Confidence            999999999886554555555666777777776      46899999999   7778889999999765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.82  E-value=1.8e-19  Score=126.35  Aligned_cols=138  Identities=22%  Similarity=0.271  Sum_probs=113.1

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|+..+.||+|+||.++.+. ..+++.+++|.+...  .......+.+|+.+++.++|+|++++++++.+.+..++++||
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~~~e~   80 (256)
T cd08221           1 HYIPIRVLGKGAFGEATLYRRTEDDSLVVWKEVNLTRLSEKERRDALNEIVILSLLQHPNIIAYYNHFMDDNTLLIEMEY   80 (256)
T ss_pred             CceEeeEecccCCceEEEEEEcCCCcEEEEEEEeecccchhHHHHHHHHHHHHHhCCCCCeeEEEeEEecCCeEEEEEEe
Confidence            48889999999999999888 457888999986543  234456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+....   .........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~---~~~~~~~kl~d~~~~~~  150 (256)
T cd08221          81 ANGGTLYDKIVRQKGQLFEEEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIF---LTKAGLIKLGDFGISKI  150 (256)
T ss_pred             cCCCcHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChHhEE---EeCCCCEEECcCcceEE
Confidence            99999999998652   1233344455667777766      47899999999   78888899999998774

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.82  E-value=1.4e-19  Score=128.23  Aligned_cols=139  Identities=19%  Similarity=0.225  Sum_probs=118.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|...+.||.|++|.||++.. .++..+++|.+.... ......+.+|+.+++.++|||++++.+.+.+....++++||
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (274)
T cd06609           1 ELFTLLECIGKGSFGEVYKAIDKRTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQCRSPYITKYYGSFLKGSKLWIIMEY   80 (274)
T ss_pred             ChhhhhhhhcCCCCeEEEEEEECCCCeEEEEEEeeccccchHHHHHHHHHHHHHHcCCCCeeeeeEEEEECCeEEEEEEe
Confidence            4688889999999999999984 478899999876443 34456688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++..........+..+.+++.++.+      +|+++++.|++   +.++..++++|||.++.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~---i~~~~~~~l~d~g~~~~  147 (274)
T cd06609          81 CGGGSCLDLLKPGKLDETYIAFILREVLLGLEYLHEEGKIHRDIKAANIL---LSEEGDVKLADFGVSGQ  147 (274)
T ss_pred             eCCCcHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---ECCCCCEEEccccccee
Confidence            999999999987644666677778888888876      57899999999   88888999999998764

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.82  E-value=1.5e-19  Score=127.76  Aligned_cols=132  Identities=23%  Similarity=0.261  Sum_probs=104.9

Q ss_pred             eecccCceeEEEEEeC---CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCC
Q 040049           21 VLGQGGQGTVHKGMLA---DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      .||+|+||.||+|...   ....+++|.+.... ......+.+|+..++.++||||+++++.+...+..++++||+++|+
T Consensus         2 ~lg~G~fg~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~nii~~~~~~~~~~~~~lv~e~~~~g~   81 (269)
T cd05042           2 EIGNGWFGKVLLGEAHRGMSKARVVVKELRASATPDEQLLFLQEVQPYRELNHPNVLQCLGQCIESIPYLLVLEFCPLGD   81 (269)
T ss_pred             cCCccCCceEEEEEEecCCCCeEEEEeecCccCChHHHHHHHHHHHHHHhCCCCCcceEEEEECCCCceEEEEEeCCCCc
Confidence            5899999999999732   34567888765432 2334567889999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCc------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           97 LSDYLHEQNE------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        97 L~~~i~~~~~------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |.+++.....      ..........+++.++.+      +|+|+|+.|++   +..+..++++|||.+..
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---l~~~~~~kl~dfg~~~~  149 (269)
T cd05042          82 LKNYLRSNRGMVAQMAQKDVLQRMACEVASGLLWLHQADFIHSDLALRNCQ---LTADLSVKIGDYGLALE  149 (269)
T ss_pred             HHHHHHhccccccccccHHHHHHHHHHHHHHHHHHHhcCEecccccHhheE---ecCCCcEEEeccccccc
Confidence            9999986532      122334456677777777      57999999999   88888999999998763

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.82  E-value=1e-19  Score=130.46  Aligned_cols=138  Identities=23%  Similarity=0.403  Sum_probs=110.1

Q ss_pred             cCCcccceecccCceeEEEEEeC-CCc--EEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLA-DER--IVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~-~~~--~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ++|.+.+.||+|+||.||++... ++.  .+++|.++.. .....+.+.+|+.++..+ +|||++++++++...+..+++
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~lv   81 (297)
T cd05089           2 EDIKFEDVIGEGNFGQVIRAMIKKDGLKMNAAIKMLKEFASENDHRDFAGELEVLCKLGHHPNIINLLGACENRGYLYIA   81 (297)
T ss_pred             ccceeeeeecCCCcceEEEEEecCCCCcceeEEEEccccCCHHHHHHHHHHHHHHHhhcCCCchhheEEEEccCCcceEE
Confidence            57889999999999999999853 333  4677776532 233446688999999998 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           89 YEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      +||+++++|.+++....                 .+....+..+.+++.++.+      +|+|+++.|++   +..+..+
T Consensus        82 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil---l~~~~~~  158 (297)
T cd05089          82 IEYAPYGNLLDFLRKSRVLETDPAFAKEHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVL---VGENLAS  158 (297)
T ss_pred             EEecCCCcHHHHHHhccccccccccccccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEE---ECCCCeE
Confidence            99999999999997542                 1223344556777777766      57899999999   7788889


Q ss_pred             cccccchhh
Q 040049          146 KRKKFEEEK  154 (167)
Q Consensus       146 ~l~df~~~~  154 (167)
                      +++|||.+.
T Consensus       159 kl~dfg~~~  167 (297)
T cd05089         159 KIADFGLSR  167 (297)
T ss_pred             EECCcCCCc
Confidence            999999875

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=99.82  E-value=1.4e-19  Score=132.89  Aligned_cols=139  Identities=22%  Similarity=0.217  Sum_probs=110.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----   83 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+...  .......+.+|+.+++.++||||+++++++...+     
T Consensus        19 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~   98 (359)
T cd07876          19 VLKRYQQLKPIGSGAQGIVCAAFDTVLGINVAVKKLSRPFQNQTHAKRAYRELVLLKCVNHKNIISLLNVFTPQKSLEEF   98 (359)
T ss_pred             hhhceEEEEEeecCCCEEEEEEEEcCCCceeEEEEecccccchhHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCCcccc
Confidence            458899999999999999999984 57899999987543  2334456789999999999999999999986543     


Q ss_pred             -cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 -VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 -~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       ..++++||+++ +|.+.+... ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus        99 ~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl---~~~~~~~kl~Dfg~a~~  172 (359)
T cd07876          99 QDVYLVMELMDA-NLCQVIHME-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  172 (359)
T ss_pred             ceeEEEEeCCCc-CHHHHHhcc-CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---ECCCCCEEEecCCCccc
Confidence             46899999976 676666532 2334455567788888877      57899999999   88889999999999873

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.82  E-value=1.4e-19  Score=128.94  Aligned_cols=140  Identities=22%  Similarity=0.322  Sum_probs=112.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Cc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EV   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~   84 (167)
                      .+.|.+.+.||+|+||.||.+..     .++..+++|.+.... ......+.+|+.+++.++|||++++.+++...  ..
T Consensus         3 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (284)
T cd05079           3 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   82 (284)
T ss_pred             hhhhhhceecCCCCceeEEEEEEccCCCCccceEEEEEcCccccHHHHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCCc
Confidence            34578889999999999999873     247789999876443 33446788999999999999999999998765  56


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        83 ~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil---~~~~~~~~l~dfg~~~~  158 (284)
T cd05079          83 IKLIMEFLPSGSLKEYLPRNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVL---VESEHQVKIGDFGLTKA  158 (284)
T ss_pred             eEEEEEccCCCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccchheEE---EcCCCCEEECCCccccc
Confidence            8899999999999999875432  344455556777777776      57899999999   77788899999998873

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.82  E-value=1.7e-20  Score=136.45  Aligned_cols=136  Identities=26%  Similarity=0.345  Sum_probs=114.1

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhc--CCCCceeeeeeeeecCC----cce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQ--INYRNVVKLLGCCLETE----VPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~--l~h~~i~~l~~~~~~~~----~~~   86 (167)
                      .......+++|+|+||.||+|.+ +++.||||++.   ..+.+.|++|-++...  ++|+||+++++.-....    .++
T Consensus       209 l~pl~l~eli~~Grfg~V~KaqL-~~~~VAVKifp---~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eyw  284 (534)
T KOG3653|consen  209 LDPLQLLELIGRGRFGCVWKAQL-DNRLVAVKIFP---EQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYW  284 (534)
T ss_pred             CCchhhHHHhhcCccceeehhhc-cCceeEEEecC---HHHHHHHHhHHHHHhccCccchhHHHhhchhccCCcccccee
Confidence            34567778999999999999986 56899999986   4455778888777765  68999999998876554    789


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh---------------hhcccchhHHHHhhhccCCccccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL---------------KRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~---------------h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      +|++|.+.|+|.++++.....+......+..++.||+|+               |||+|+.|++   +-++++++|+|||
T Consensus       285 LVt~fh~kGsL~dyL~~ntisw~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVL---vK~DlTccIaDFG  361 (534)
T KOG3653|consen  285 LVTEFHPKGSLCDYLKANTISWNSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVL---VKNDLTCCIADFG  361 (534)
T ss_pred             EEeeeccCCcHHHHHHhccccHHHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceE---EccCCcEEeeccc
Confidence            999999999999999987766666667777788888884               7999999999   7888999999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      +|..
T Consensus       362 LAl~  365 (534)
T KOG3653|consen  362 LALR  365 (534)
T ss_pred             eeEE
Confidence            9874

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.82  E-value=3.3e-19  Score=125.71  Aligned_cols=138  Identities=22%  Similarity=0.339  Sum_probs=112.0

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc---------cHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG---------KLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~---------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      +|.+...||+|++|.||.+.. .++..+++|.+......         ..+.+.+|+.+++.++||||+++++++...+.
T Consensus         1 ~~~~~~~ig~g~~~~v~~a~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   80 (267)
T cd06628           1 KWIKGALIGSGSFGSVYLGMNASSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKELQHENIVQYLGSSLDADH   80 (267)
T ss_pred             CccccceeecCCCeEEEEEEecCCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEeCCc
Confidence            367778999999999999984 46788999977543221         12457789999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.|++   +.+...++++|||.++.
T Consensus        81 ~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil---~~~~~~~~l~dfg~~~~  155 (267)
T cd06628          81 LNIFLEYVPGGSVAALLNNYGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANIL---VDNKGGIKISDFGISKK  155 (267)
T ss_pred             cEEEEEecCCCCHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEE---EcCCCCEEecccCCCcc
Confidence            9999999999999999986543 344455566777777766      57899999999   78888899999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.82  E-value=1.5e-19  Score=126.61  Aligned_cols=138  Identities=22%  Similarity=0.284  Sum_probs=114.5

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|...+.||+|++|.+|++.. .++..+++|.+...  .......+.+|+++++.++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08529           1 DFEILNKIGKGSFGVVFKVVRKADKRVYAMKQIDLSKMNRREREEAIDEARVLAKLDSSYIIRYYESFLDKGKLNIVMEY   80 (256)
T ss_pred             CceEeEEecCCCCeEEEEEEEcCCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHhcCCCCeehheeeeccCCEEEEEEEe
Confidence            477888999999999999984 57889999987543  344567788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++....   ......+..+.+++.++.+      +|+++++.||+   +..+..++++|||.++.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nil---i~~~~~~~l~df~~~~~  150 (256)
T cd08529          81 AENGDLHKLLKMQRGRPLPEDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLF---LDAYDNVKIGDLGVAKL  150 (256)
T ss_pred             CCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEE---EeCCCCEEEccccccee
Confidence            99999999998642   1334455566677777766      46899999999   78888999999998763

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.82  E-value=8.4e-20  Score=129.56  Aligned_cols=139  Identities=24%  Similarity=0.421  Sum_probs=112.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||++...      ++..+++|.+...... ..+.+.+|+.++..++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~   83 (280)
T cd05049           4 RDTIVLKRELGEGAFGKVFLGECYHLEPENDKELVAVKTLKETASNDARKDFEREAELLTNFQHENIVKFYGVCTEGDPP   83 (280)
T ss_pred             hHHhhHHhhccccCCceEeeeeeccccCcCCcceEEEEeecccCCHHHHHHHHHHHHHHHhcCCCCchheeeEEecCCCe
Confidence            456888999999999999999742      2478999987654333 346788999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc---------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE---------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~---------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                      ++++||+++++|.+++.....               .....+..+.+++.++.+      +|+|+++.|++   +..+..
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nil---i~~~~~  160 (280)
T cd05049          84 IMVFEYMEHGDLNKFLRSHGPDAAFLKSPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCL---VGYDLV  160 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCCchhhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEE---EcCCCe
Confidence            999999999999999986532               122233445666666666      57899999999   788899


Q ss_pred             ccccccchhh
Q 040049          145 PKRKKFEEEK  154 (167)
Q Consensus       145 ~~l~df~~~~  154 (167)
                      ++++|||.++
T Consensus       161 ~kl~d~g~~~  170 (280)
T cd05049         161 VKIGDFGMSR  170 (280)
T ss_pred             EEECCcccce
Confidence            9999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.82  E-value=2.2e-19  Score=128.46  Aligned_cols=140  Identities=24%  Similarity=0.354  Sum_probs=113.6

Q ss_pred             hhcCCcccceecccCceeEEEEEeCC-----------------CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCcee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLAD-----------------ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVV   73 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~-----------------~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~   73 (167)
                      ..++|.+.+.||+|+||.||++....                 +..+++|.+.... ....+.+.+|+++++.++|||++
T Consensus         3 ~~~~~~~~~~lg~G~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~   82 (296)
T cd05051           3 PRQPLNFVEKLGEGQFGEVHLCEADGLQDFSEKAFAENDNADAPVLVAVKVLRPDASDNAREDFLKEVKILSRLSDPNIA   82 (296)
T ss_pred             chhhCcccccccCCCCccEEEEEeccCCcccccccccccccCCceeEEEEEecCccCHHHHHHHHHHHHHHHhcCCCCEe
Confidence            35689999999999999999987421                 2457888876442 23456788999999999999999


Q ss_pred             eeeeeeecCCcceEEEecCCCCCHHHHHhhcC------------cchHhhHHHHHHHHcCchh------hhhcccchhHH
Q 040049           74 KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIW  135 (167)
Q Consensus        74 ~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~  135 (167)
                      ++++++...+..++++|++++++|.+++....            ......+..+.+++.++.+      +|+|+++.|++
T Consensus        83 ~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nil  162 (296)
T cd05051          83 RLLGVCTVDPPLCMIMEYMENGDLNQFLQKHVAETSGLACNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCL  162 (296)
T ss_pred             EEEEEEecCCCcEEEEecCCCCCHHHHHHhcccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhcee
Confidence            99999999899999999999999999987654            1334445556777777766      57999999999


Q ss_pred             HHhhhccCCccccccchhh
Q 040049          136 KQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~  154 (167)
                         +..+..++++|||.++
T Consensus       163 ---i~~~~~~~l~dfg~~~  178 (296)
T cd05051         163 ---VGKNYTIKIADFGMSR  178 (296)
T ss_pred             ---ecCCCceEEcccccee
Confidence               7888899999999877

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.82  E-value=2.3e-19  Score=127.36  Aligned_cols=139  Identities=20%  Similarity=0.279  Sum_probs=114.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +-|...+.||+|+||.||++.. .++..+|+|...... ......+.+|+..+..++|||++++++.+...+..++|+||
T Consensus         4 ~~~~~~~~ig~G~~~~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   83 (277)
T cd06641           4 ELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIMEY   83 (277)
T ss_pred             HhhhhheeEeecCCeEEEEEEECCCCcEEEEEEeccccchHHHHHHHHHHHHHHhcCCCCEeEEEEEEEeCCeEEEEEEe
Confidence            3467788999999999999984 578899999865432 23345688899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.............+.+++.++.+      +|+|+++.|++   +..+..++++|||+++.
T Consensus        84 ~~~~~l~~~i~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~---i~~~~~~~l~dfg~~~~  150 (277)
T cd06641          84 LGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVL---LSEHGEVKLADFGVAGQ  150 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHccCCeecCCCCHHhEE---ECCCCCEEEeeccccee
Confidence            999999999876544555566667777777766      57899999999   77888899999998864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.81  E-value=1.8e-19  Score=128.01  Aligned_cols=131  Identities=19%  Similarity=0.162  Sum_probs=104.6

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|+||.||++.. .+++.+++|.+....   .........|+.+++.++||||+++.+.+..+...++++||+++++|
T Consensus         1 lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~l~hp~i~~~~~~~~~~~~~~lv~e~~~g~~L   80 (277)
T cd05607           1 LGKGGFGEVCAVQVKNTGKMYACKKLDKKRLKKKSGEKMALLEKEILEKVNSPFIVNLAYAFESKTHLCLVMSLMNGGDL   80 (277)
T ss_pred             CCCCCceEEEEEEEccCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHhcCCCcEEEEEEEEecCCeEEEEEecCCCCCH
Confidence            68999999999984 578999999875321   11223456789999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+.+.....   .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nil---i~~~~~~~l~Dfg~~~~  144 (277)
T cd05607          81 KYHIYNVGERGLEMERVIHYSAQITCGILHLHSMDIVYRDMKPENVL---LDDQGNCRLSDLGLAVE  144 (277)
T ss_pred             HHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEE---EcCCCCEEEeeceeeee
Confidence            988865432   333344556678888877      46899999999   77888899999998763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=9.8e-20  Score=132.35  Aligned_cols=130  Identities=22%  Similarity=0.138  Sum_probs=104.1

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC---CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI---NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      ||+|+||.||++.. .+++.+|+|.+...   ..........|..++...   +||+|+++++.+...+..++++||+++
T Consensus         1 lG~G~~g~Vy~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~~~~~~lv~e~~~~   80 (330)
T cd05586           1 IGKGTFGQVYQVRKKDTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQTDSDLYLVTDYMSG   80 (330)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEecCCeEEEEEcCCCC
Confidence            69999999999984 57899999987532   122333455566666554   699999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|.+.+..... .....+..+.+++.++.++      |+|+|+.||+   +..+..++++|||+++
T Consensus        81 g~L~~~l~~~~~~~~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nil---i~~~~~~kl~Dfg~a~  144 (330)
T cd05586          81 GELFWHLQKEGRFSEDRAKFYIAELVLALEHLHKYDIVYRDLKPENIL---LDATGHIALCDFGLSK  144 (330)
T ss_pred             ChHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeE---ECCCCCEEEecCCcCc
Confidence            999998876543 4455566677888888774      7999999999   7888899999999876

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.81  E-value=1.6e-19  Score=128.54  Aligned_cols=137  Identities=27%  Similarity=0.354  Sum_probs=111.3

Q ss_pred             CcccceecccCceeEEEEEe-----CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceE
Q 040049           16 LNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLL   87 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~l   87 (167)
                      |...+.||+|+||.||.+..     .++..+++|.+.... ......+.+|+.+++.++|||++++.+++...  ...++
T Consensus         6 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~l   85 (283)
T cd05080           6 LKKIRVLGEGHFGKVSLYCYDPANDGTGEMVAVKTLKRECGQQNTSGWKKEINILKTLYHENIVKYKGCCSEQGGKGLQL   85 (283)
T ss_pred             ceeceecccCCCcEEEEeeEccccCCCCceEEEEEeccccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCceEEE
Confidence            48889999999999987642     357789999876543 23456788999999999999999999987653  45789


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++..........+....+++.++.+      +|+|+++.|++   +.++..++++|||.++.
T Consensus        86 v~e~~~~~~l~~~~~~~~l~~~~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~~l~dfg~~~~  156 (283)
T cd05080          86 IMEYVPLGSLRDYLPKHKLNLAQLLLFAQQICEGMAYLHSQHYIHRDLAARNVL---LDNDRLVKIGDFGLAKA  156 (283)
T ss_pred             EecCCCCCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCeeccccChheEE---EcCCCcEEEeecccccc
Confidence            9999999999999987655556666677788888877      46899999999   77888899999999874

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.81  E-value=2.7e-19  Score=126.17  Aligned_cols=139  Identities=19%  Similarity=0.219  Sum_probs=111.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-----cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-----KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVP   85 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-----~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~   85 (167)
                      ++|.+.+.||+|+||.||.+.. .++..+++|.+....     ......+.+|+.+++.++|||++++++++.+.  ..+
T Consensus         2 ~~~~~~~~l~~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (265)
T cd06652           2 TNWRLGKLLGQGAFGRVYLCYDADTGRELAVKQVQFDPESPETSKEVNALECEIQLLKNLLHERIVQYYGCLRDPMERTL   81 (265)
T ss_pred             CcceEeeEEecCCceEEEEEEEcCCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHhcCCCCeeeEEeEeccCCCceE
Confidence            4788999999999999999984 578899999764321     12345678899999999999999999988764  457


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++++|.+++..... ..........+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        82 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil---~~~~~~~~l~Dfg~~~~  155 (265)
T cd06652          82 SIFMEHMPGGSIKDQLKSYGALTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANIL---RDSVGNVKLGDFGASKR  155 (265)
T ss_pred             EEEEEecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---ecCCCCEEECcCccccc
Confidence            899999999999999876542 333444556677777766      57899999999   77888899999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.81  E-value=1.4e-19  Score=127.54  Aligned_cols=139  Identities=24%  Similarity=0.337  Sum_probs=114.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..+|.+.+.||+|++|.||++.. .++..+++|.+... ......+.+|+.+++.++|||++++++++...+..++++||
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~K~~~~~-~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (263)
T cd05052           5 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYIITEF   83 (263)
T ss_pred             hHHeEEeeecCCcccceEEEEEEecCCceEEEEEecCC-chHHHHHHHHHHHHHhCCCCChhheEEEEcCCCCcEEEEEe
Confidence            45688889999999999999984 56888999987643 33456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....   +.......+.+++.++.+      +|+|+++.|++   +.++..++++|||.+..
T Consensus        84 ~~~~~L~~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil---~~~~~~~kl~df~~~~~  153 (263)
T cd05052          84 MTYGNLLDYLRECNRQEVNAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL---VGENHLVKVADFGLSRL  153 (263)
T ss_pred             CCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEE---EcCCCcEEeCCCccccc
Confidence            999999999876432   333344456677777776      46899999999   77888999999998774

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.81  E-value=1.2e-19  Score=129.28  Aligned_cols=149  Identities=20%  Similarity=0.186  Sum_probs=116.1

Q ss_pred             cccHHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049            3 IFSAKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      .+.++.+....++|++.+.||+|+||.||++.. .++..+++|...... .....+.+|+.++..+ +|||++++++++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   85 (286)
T cd06638           7 TIIFDSFPDPSDTWEIIETIGKGTYGKVFKVLNKKNGSKAAVKILDPIH-DIDEEIEAEYNILKALSDHPNVVKFYGMYY   85 (286)
T ss_pred             eEEeecCCCcccceeeeeeeccCCCcEEEEEEECCCCceeEEEeecccc-chHHHHHHHHHHHHHHhcCCCeeeeeeeee
Confidence            345566777889999999999999999999984 567889999765432 2235677899999998 6999999999874


Q ss_pred             -----cCCcceEEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           81 -----ETEVPLLVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        81 -----~~~~~~lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                           ..+..++++||+++++|.+++....     ......+..+.+++.++.+      +|+|+++.|++   +.....
T Consensus        86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil---i~~~~~  162 (286)
T cd06638          86 KKDVKNGDQLWLVLELCNGGSVTDLVKGFLKRGERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNIL---LTTEGG  162 (286)
T ss_pred             ecccCCCCeEEEEEeecCCCCHHHHHHHhhccCccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEE---ECCCCC
Confidence                 3356899999999999999876421     1333445556677777766      56899999999   777788


Q ss_pred             ccccccchhhh
Q 040049          145 PKRKKFEEEKW  155 (167)
Q Consensus       145 ~~l~df~~~~~  155 (167)
                      ++++|||.++.
T Consensus       163 ~kl~dfg~~~~  173 (286)
T cd06638         163 VKLVDFGVSAQ  173 (286)
T ss_pred             EEEccCCceee
Confidence            99999998764

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.81  E-value=2.4e-19  Score=126.05  Aligned_cols=140  Identities=24%  Similarity=0.337  Sum_probs=115.3

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|++|.||++...++..+++|.+.... .....+.+|+..++.++|||++++++++......++++||
T Consensus         4 ~~~~~~i~~~ig~g~~~~v~~~~~~~~~~~~vK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   82 (261)
T cd05034           4 PRESLKLERKLGAGQFGEVWMGTWNGTTKVAVKTLKPGT-MSPEAFLQEAQIMKKLRHDKLVQLYAVCSEEEPIYIVTEY   82 (261)
T ss_pred             chhheeeeeeeccCcceEEEEEEEcCCceEEEEEecCCc-cCHHHHHHHHHHHhhCCCCCEeeeeeeeecCCceEEEEec
Confidence            457899999999999999999987677889999876433 3456788999999999999999999999988899999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.+...   ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        83 ~~~~~L~~~i~~~~~~~~~~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nil---i~~~~~~~l~d~g~~~~  152 (261)
T cd05034          83 MSKGSLLDFLKSGEGKKLRLPQLVDMAAQIAEGMAYLESRNYIHRDLAARNIL---VGENLVCKIADFGLARL  152 (261)
T ss_pred             cCCCCHHHHHhccccCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcchheEE---EcCCCCEEECcccccee
Confidence            999999999986431   333344455566666665      57899999999   88889999999998763

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.81  E-value=2.9e-19  Score=125.29  Aligned_cols=138  Identities=19%  Similarity=0.243  Sum_probs=113.7

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +|++.+.||+|+||.||.+.. .+++.+++|.+... .....+.+.+|+.+++.++|||++++.+.+.+++..++++||+
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (255)
T cd08219           1 QYNVLRVVGEGSFGRALLVQHVNSDQKYAMKEIRLPKSSSAVEDSRKEAVLLAKMKHPNIVAFKESFEADGHLYIVMEYC   80 (255)
T ss_pred             CceEEEEeeccCCeEEEEEEEcCCCceEEEEEEEcCcchHHHHHHHHHHHHHHhCCCCCcceEEEEEEECCEEEEEEeeC
Confidence            578889999999999999984 57889999987543 3344567888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++|.+.+.....   .....+..+.+++.++.+      +|+|+++.|++   +.++..++++|||.++.
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dl~p~nil---i~~~~~~~l~dfg~~~~  149 (255)
T cd08219          81 DGGDLMQKIKLQRGKLFPEDTILQWFVQMCLGVQHIHEKRVLHRDIKSKNIF---LTQNGKVKLGDFGSARL  149 (255)
T ss_pred             CCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEE---ECCCCcEEEcccCccee
Confidence            99999998875322   334455556777777766      57899999999   77888899999998864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.81  E-value=2.3e-19  Score=125.38  Aligned_cols=133  Identities=27%  Similarity=0.400  Sum_probs=108.0

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLS   98 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~   98 (167)
                      +.||+|+||.||++...++..+++|.+..... .....+.+|+..++.++|||++++++++...+..++++||+++++|.
T Consensus         1 ~~ig~g~~g~vy~~~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L~   80 (250)
T cd05085           1 ELLGKGNFGEVFKGTLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQYDHPNIVKLIGVCTQRQPIYIVMELVPGGDFL   80 (250)
T ss_pred             CccCCCCCceEEEEEecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHhCCCCCcCeEEEEEecCCccEEEEECCCCCcHH
Confidence            36899999999999876788899998765432 33446889999999999999999999999999999999999999999


Q ss_pred             HHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           99 DYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        99 ~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++.....  ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nil---i~~~~~~~l~d~g~~~~  142 (250)
T cd05085          81 SFLRKKKDELKTKQLVKFALDAAAGMAYLESKNCIHRDLAARNCL---VGENNVLKISDFGMSRQ  142 (250)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccChheEE---EcCCCeEEECCCcccee
Confidence            99875432  233344455666666665      57899999999   77888899999998864

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.81  E-value=9.2e-20  Score=130.74  Aligned_cols=138  Identities=22%  Similarity=0.230  Sum_probs=116.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      ..|.....||+|+||.||++.. .+++.+++|.+........+.+.+|+..+..++|||++++++.+...+..++++||+
T Consensus        21 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~hp~i~~~~~~~~~~~~~~iv~e~~  100 (297)
T cd06659          21 SLLENYIKIGEGSTGIVCIAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHQNVVEMYKSYLVGEELWVLMEFL  100 (297)
T ss_pred             hhHHhhhhcCCCCceeEEEEEEcCCCCEEEEEEEEecccchHHHHHHHHHHHHhCCCCchhhhhhheeeCCeEEEEEecC
Confidence            4556667899999999999984 478899999886555455567889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++|.+.+..........+..+.+++.++.+      +|+|+++.|++   +..+..++++|||++.
T Consensus       101 ~~~~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nil---l~~~~~~kL~dfg~~~  165 (297)
T cd06659         101 QGGALTDIVSQTRLNEEQIATVCESVLQALCYLHSQGVIHRDIKSDSIL---LTLDGRVKLSDFGFCA  165 (297)
T ss_pred             CCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHeE---EccCCcEEEeechhHh
Confidence            99999988876544555666677788888876      57899999999   7888899999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.81  E-value=2.6e-19  Score=125.97  Aligned_cols=138  Identities=20%  Similarity=0.249  Sum_probs=116.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc--cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG--KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~--~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.+|++.. .+++.+++|.+......  ....+..|+.+++.++|+||+++++.+...+..++++||
T Consensus         1 ~y~~~~~lg~G~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06626           1 RWQRGNKIGGGTFGKVYTAVNLDTGELMAVKEIRIQDNDPKTIKEIADEMKVLELLKHPNLVKYYGVEVHREKVYIFMEY   80 (264)
T ss_pred             CceeeeEeecCCCcEEEEEEECCCCcEEEEEEEECcccchHHHHHHHHHHHHHHhCCCCChhheeeeEecCCEEEEEEec
Confidence            478889999999999999984 57889999987655443  567789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++..... .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil---~~~~~~~kl~d~g~~~~  148 (264)
T cd06626          81 CSGGTLEELLEHGRILDEHVIRVYTLQLLEGLAYLHSHGIVHRDIKPANIF---LDHNGVIKLGDFGCAVK  148 (264)
T ss_pred             CCCCcHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEEcccccccc
Confidence            999999999887532 444555567778888776      46899999999   77788899999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.81  E-value=2.3e-19  Score=127.38  Aligned_cols=139  Identities=20%  Similarity=0.274  Sum_probs=113.8

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..|+..+.||+|+||.||.+.. .++..+++|.+.... ......+.+|+.+++.+.|||++++++.+.+.+..++++||
T Consensus         4 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06640           4 ELFTKLERIGKGSFGEVFKGIDNRTQQVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HhhhhhhhcccCCCeEEEEEEEccCCEEEEEEEEeccccHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCEEEEEEec
Confidence            4577788999999999999985 468899999876432 33456788899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+.............+.+++.++.+      +|+++++.|++   +.++..++++|||.+..
T Consensus        84 ~~~~~L~~~i~~~~l~~~~~~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil---~~~~~~~~l~dfg~~~~  150 (277)
T cd06640          84 LGGGSALDLLRAGPFDEFQIATMLKEILKGLDYLHSEKKIHRDIKAANVL---LSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             CCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCcCCChhhEE---EcCCCCEEEccccccee
Confidence            999999999876543444444556667666665      57899999999   77888899999998864

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.81  E-value=2.4e-19  Score=126.32  Aligned_cols=137  Identities=22%  Similarity=0.328  Sum_probs=110.5

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|++|.||++...++..+++|.+..... ..+.+.+|+.+++.++|||++++++.+. .+..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~~~v~~~~~~~~~~valK~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~~   82 (262)
T cd05071           5 RESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGTM-SPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIVTEYM   82 (262)
T ss_pred             hHHeeEeeecCCCCCCcEEEEEecCCceEEEEecccCcc-CHHHHHHHHHHHHhCCCCCcceEEEEEC-CCCcEEEEEcC
Confidence            457999999999999999999865556799998764332 3457889999999999999999998874 45689999999


Q ss_pred             CCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++|+|.+++....   ...........+++.++.+      +|+|+++.|++   +..+..++++|||.++
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nil---l~~~~~~~L~dfg~~~  150 (262)
T cd05071          83 SKGSLLDFLKGEMGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL---VGENLVCKVADFGLAR  150 (262)
T ss_pred             CCCcHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHCCccccccCcccEE---EcCCCcEEeccCCcee
Confidence            9999999998632   1334445556677777766      57899999999   7778889999999886

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.81  E-value=2.2e-19  Score=128.06  Aligned_cols=137  Identities=19%  Similarity=0.146  Sum_probs=111.1

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      |...+.||+|+||.||.+.. .+++.+|+|.+....   ......+.+|+.+++.++|++++++.+.+..++..++++||
T Consensus         2 ~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05632           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKRLEKKRIKKRKGESMALNEKQILEKVNSQFVVNLAYAYETKDALCLVLTI   81 (285)
T ss_pred             ceEEEEEecCCCeEEEEEEECCCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHHcCCcCceeEEEEEecCCEEEEEEEe
Confidence            66778899999999999984 578899999875432   22234567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+....   .+.......+.+++.++.+      +|+|+++.|++   +.+...++++|||.+..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nil---i~~~~~~kl~Dfg~~~~  151 (285)
T cd05632          82 MNGGDLKFHIYNMGNPGFEEERALFYAAEILCGLEDLHRENTVYRDLKPENIL---LDDYGHIRISDLGLAVK  151 (285)
T ss_pred             ccCccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEE---ECCCCCEEEecCCccee
Confidence            99999998887543   2344445556777777776      57899999999   77788899999998853

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.81  E-value=2.1e-19  Score=126.91  Aligned_cols=143  Identities=20%  Similarity=0.246  Sum_probs=114.2

Q ss_pred             HhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..+++.......||+|+||.||++. ..++..+++|.+........+.+.+|+.+++.++|||++++++++...+..+++
T Consensus         4 ~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv   83 (268)
T cd06624           4 EYEYDENGERVVLGKGTYGIVYAARDLSTQVRIAIKEIPERDSRYVQPLHEEIALHSYLKHRNIVQYLGSDSENGFFKIF   83 (268)
T ss_pred             ccccccCCceEEEecCCceEEEEeEecCCCcEEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCeeeeeeeeccCCEEEEE
Confidence            3455556666789999999999998 456788999987765555667889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc----chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE----DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++.....    ..........+++.++++      +|+|+++.|++   +.. ...++++|||.+..
T Consensus        84 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil---~~~~~~~~~l~dfg~~~~  158 (268)
T cd06624          84 MEQVPGGSLSALLRSKWGPLKDNEQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVL---VNTYSGVVKISDFGTSKR  158 (268)
T ss_pred             EecCCCCCHHHHHHHhcccCCCcHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEE---EcCCCCeEEEecchhhee
Confidence            999999999999986422    223333445677777777      46899999998   654 45789999998763

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.81  E-value=2.7e-19  Score=127.71  Aligned_cols=140  Identities=21%  Similarity=0.270  Sum_probs=114.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|++|.||++.. .+++.+++|.+.... ......+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus         3 ~~~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   82 (291)
T cd07844           3 KLETYKKLDKLGEGSYATVYKGRSKLTGQLVALKEIRLEHEEGAPFTAIREASLLKDLKHANIVTLHDIIHTKKTLTLVF   82 (291)
T ss_pred             CccceeEEEEEeecCCeEEEEEEEcCCCcEEEEEEEecccccCCchhHHHHHHHHhhCCCcceeeEEEEEecCCeEEEEE
Confidence            347899999999999999999985 478899999875432 222345678999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++ +|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.++.
T Consensus        83 e~~~~-~L~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~dl~p~nil---~~~~~~~kl~dfg~~~~  152 (291)
T cd07844          83 EYLDT-DLKQYMDDCGGGLSMHNVRLFLFQLLRGLAYCHQRRVLHRDLKPQNLL---ISERGELKLADFGLARA  152 (291)
T ss_pred             ecCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCHHHEE---EcCCCCEEECccccccc
Confidence            99975 99998876432  334455556788888877      57899999999   78888899999998764

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.81  E-value=2.4e-19  Score=127.00  Aligned_cols=139  Identities=22%  Similarity=0.307  Sum_probs=112.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.....||+|+||.||++...      +...+++|........ ....+.+|+++++.++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~   83 (275)
T cd05046           4 RSNLQEITTLGRGEFGEVFLAKAKGIEEEGGETLVLVKALQKTKDENLQSEFRRELDMFRKLSHKNVVRLLGLCREAEPH   83 (275)
T ss_pred             hHhceeeeeecccceeEEEEEEeccCCcCCCcceEEEEccCCccchHHHHHHHHHHHHHHhcCCcceeeeEEEECCCCcc
Confidence            367889999999999999999842      2456888876544333 456789999999999999999999999988999


Q ss_pred             eEEEecCCCCCHHHHHhhcC----------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccc
Q 040049           86 LLVYEYIPNGNLSDYLHEQN----------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~----------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                      ++++||+++|+|.+++....          .+.......+.+++.++.+      +|+|+++.|++   +.....++++|
T Consensus        84 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nil---i~~~~~~~l~~  160 (275)
T cd05046          84 YMILEYTDLGDLKQFLRATKSKDEKLKPPPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCL---VSSQREVKVSL  160 (275)
T ss_pred             eEEEEecCCCcHHHHHHhcccccccccccCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEE---EeCCCcEEEcc
Confidence            99999999999999998654          1334444556677777766      57999999999   77788889999


Q ss_pred             cchhh
Q 040049          150 FEEEK  154 (167)
Q Consensus       150 f~~~~  154 (167)
                      ||.++
T Consensus       161 ~~~~~  165 (275)
T cd05046         161 LSLSK  165 (275)
T ss_pred             ccccc
Confidence            99876

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.81  E-value=3.4e-19  Score=126.76  Aligned_cols=136  Identities=21%  Similarity=0.278  Sum_probs=111.6

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.||++.. .++..+++|.+...  .......+.+|+.+++.++|||++++++++..++..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (285)
T cd07861           1 DYTKIEKIGEGTYGVVYKGRNKKTGQIVAMKKIRLESEEEGVPSTAIREISLLKELQHPNIVCLQDVLMQESRLYLIFEF   80 (285)
T ss_pred             CceEeeEecccCceEEEEEEECCCCcEEEEEEeccccccCCchHHHHHHHHHHHhcCCCCEeeeEEEEeeCCeEEEEEec
Confidence            578889999999999999984 57899999987543  223345678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc----chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE----DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++ ++|.+++.....    .....+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+.
T Consensus        81 ~~-~~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~  149 (285)
T cd07861          81 LS-MDLKKYLDSLPKGQYMDAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLL---IDNKGVIKLADFGLAR  149 (285)
T ss_pred             CC-CCHHHHHhcCCCCCcCCHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEE---EcCCCcEEECccccee
Confidence            97 488888865331    3344455677888888774      6899999999   7888899999999876

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.81  E-value=3.1e-19  Score=125.72  Aligned_cols=139  Identities=18%  Similarity=0.279  Sum_probs=114.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|++|.||++.. .+++.+++|.++..   .......+.+|+.+++.++|++++++++.+...+..++++
T Consensus         2 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~~~~~i~~~~~~~~~~~~~~lv~   81 (267)
T cd08224           2 GNFKIEKKIGKGQFSVVYKAICLLDGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQLDHPNVIKYLASFIENNELNIVL   81 (267)
T ss_pred             CceeeeeeeccCCceEEEEEEEcCCCCEEEEEEeecccccchhhHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEEEE
Confidence            5789999999999999999995 47899999977532   2333567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++....     ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        82 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil---~~~~~~~~l~d~~~~~~  155 (267)
T cd08224          82 ELADAGDLSRMIKHFKKQKRLIPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVF---ITATGVVKLGDLGLGRF  155 (267)
T ss_pred             ecCCCCCHHHHHHHhcccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEE---ECCCCcEEEeccceeee
Confidence            9999999999886532     1334445556677777766      47899999999   77888899999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.81  E-value=2.6e-19  Score=128.85  Aligned_cols=142  Identities=23%  Similarity=0.342  Sum_probs=112.0

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC--------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      ...++|.+.+.||+|+||.||.+...        +...+++|.+.... ......+..|+.+++.+ +|||++++++++.
T Consensus        15 ~~~~~~~i~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~   94 (307)
T cd05098          15 VPRDRLVLGKPLGEGCFGQVVMAEAIGLDKEKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   94 (307)
T ss_pred             eehHHeEEeeeeccCCCeeEEEeEEeccCCcccCccceEEEEeccCCCChHHHHHHHHHHHHHHHhcCCCCEeeEEEEEe
Confidence            34578999999999999999998731        23468999876432 33455688899999999 7999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      ..+..++++||+++|+|.+++.....                 ........+.+++.++.+      +|+|+++.|++  
T Consensus        95 ~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil--  172 (307)
T cd05098          95 QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYNPTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL--  172 (307)
T ss_pred             cCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheE--
Confidence            99999999999999999999986431                 112223345666777766      57899999999  


Q ss_pred             hhhccCCccccccchhhh
Q 040049          138 QLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~~  155 (167)
                       +..+..++++|||.++.
T Consensus       173 -l~~~~~~kL~dfg~a~~  189 (307)
T cd05098         173 -VTEDNVMKIADFGLARD  189 (307)
T ss_pred             -EcCCCcEEECCCccccc
Confidence             77888899999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.81  E-value=1.8e-19  Score=128.06  Aligned_cols=139  Identities=24%  Similarity=0.383  Sum_probs=111.7

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CC-----cEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DE-----RIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~-----~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||++... .+     ..+++|.+.... ......+.+|+..+..++|||++++++++...+..
T Consensus         4 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T cd05048           4 LSAVRFLEELGEGAFGKVYKGELTGPNERLSATSVAIKTLKENAEPKVQQEFRQEAELMSDLQHPNIVCLLGVCTKEQPT   83 (283)
T ss_pred             hHHcchhhcccCccCCcEEEEEEecCCCCcceeeEEEEecccCCCHHHHHHHHHHHHHHHhcCCcccceEEEEEcCCCce
Confidence            357889999999999999999742 22     578888875432 23345688999999999999999999999988899


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~  142 (167)
                      ++++||+++++|.+++.....                 .....+..+.+++.++.+      +|+|++++|++   +.++
T Consensus        84 ~~~~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil---~~~~  160 (283)
T cd05048          84 CMLFEYLAHGDLHEFLVRNSPHSDVGAESGDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCL---VGEG  160 (283)
T ss_pred             EEEEecCCCCcHHHHHHhcCCCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEE---EcCC
Confidence            999999999999999986421                 122334556777777776      46899999999   7788


Q ss_pred             CCccccccchhh
Q 040049          143 LAPKRKKFEEEK  154 (167)
Q Consensus       143 ~~~~l~df~~~~  154 (167)
                      ..++++|||.++
T Consensus       161 ~~~~L~dfg~~~  172 (283)
T cd05048         161 LTVKISDFGLSR  172 (283)
T ss_pred             CcEEECCCccee
Confidence            889999999886

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.81  E-value=3.4e-19  Score=125.30  Aligned_cols=139  Identities=22%  Similarity=0.320  Sum_probs=112.8

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|+||.||++...+++.+++|.+.... .....+.+|+.+++.++|||++++++.+ ..+..++++||
T Consensus         4 ~~~~~~~~~~ig~G~~g~v~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~~v~e~   81 (260)
T cd05067           4 PRETLKLVKKLGAGQFGEVWMGYYNGHTKVAIKSLKQGS-MSPEAFLAEANLMKQLQHPRLVRLYAVV-TQEPIYIITEY   81 (260)
T ss_pred             chHHceeeeeeccCccceEEeeecCCCceEEEEEecCCC-CcHHHHHHHHHHHHhcCCcCeeeEEEEE-ccCCcEEEEEc
Confidence            456789999999999999999997778899999876433 3446788999999999999999999886 45678999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +.++..++++|||.+..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~---i~~~~~~~l~dfg~~~~  151 (260)
T cd05067          82 MENGSLVDFLKTPEGIKLTINKLIDMAAQIAEGMAFIERKNYIHRDLRAANIL---VSETLCCKIADFGLARL  151 (260)
T ss_pred             CCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEE---EcCCCCEEEccCcceee
Confidence            999999999875432   233344445667777766      57899999999   78888999999998864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.81  E-value=2.8e-19  Score=126.70  Aligned_cols=140  Identities=24%  Similarity=0.367  Sum_probs=113.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++...      ++..+++|...... ......+.+|+.+++.++|||++++++++.....
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~   83 (277)
T cd05032           4 PREKITLIRELGQGSFGMVYEGLAKGVVKGEPETRVAIKTVNENASMRERIEFLNEASVMKEFNCHHVVRLLGVVSTGQP   83 (277)
T ss_pred             chHHeeEEeEecCCCCceEEEEEEeccCCCCcceeEEEEecCCccCHHHHHHHHHHHHHHHhCCCCceeEEEEEEcCCCC
Confidence            3567899999999999999999742      23679999875432 2334568899999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-----------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-----------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-----------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                      .++++||+++|+|.+++.....           .....+..+.+++.++.+      +|+|+++.|++   +.++..+++
T Consensus        84 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nil---l~~~~~~kl  160 (277)
T cd05032          84 TLVVMELMAKGDLKSYLRSRRPEAENNPGLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCM---VAEDLTVKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHhcccchhhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEE---EcCCCCEEE
Confidence            9999999999999999975432           122344456677777776      56899999999   888899999


Q ss_pred             cccchhh
Q 040049          148 KKFEEEK  154 (167)
Q Consensus       148 ~df~~~~  154 (167)
                      +|||.++
T Consensus       161 ~dfg~~~  167 (277)
T cd05032         161 GDFGMTR  167 (277)
T ss_pred             CCcccch
Confidence            9999887

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.81  E-value=8.7e-20  Score=137.19  Aligned_cols=140  Identities=21%  Similarity=0.387  Sum_probs=112.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC---CC--cEEEEEeccC-CCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA---DE--RIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~---~~--~~~avk~~~~-~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      +....+.+.||.|.||.||.|...   .|  ..||+|.-+. .++.+.+.|+.|+.+|++++||||++++|+|.. ...|
T Consensus       388 Re~Itl~r~iG~GqFGdVy~gvYt~~~kge~iaVAvKtCK~d~t~d~tekflqEa~iMrnfdHphIikLIGv~~e-~P~W  466 (974)
T KOG4257|consen  388 RELITLKRLIGEGQFGDVYKGVYTDPEKGERIAVAVKTCKTDCTPDDTEKFLQEASIMRNFDHPHIIKLIGVCVE-QPMW  466 (974)
T ss_pred             hhhccHHHhhcCCcccceeeeEecccccCcceeeeeehhccCCChhhHHHHHHHHHHHHhCCCcchhheeeeeec-ccee
Confidence            344556679999999999999732   23  3467775433 456678999999999999999999999999954 4689


Q ss_pred             EEEecCCCCCHHHHHhhcCcchH--hhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFV--KDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~--~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +|||.++.|.|..+++.......  .-..+..|++.+++|      +|||+..-|++   +.+.--+|++|||++||.
T Consensus       467 ivmEL~~~GELr~yLq~nk~sL~l~tL~ly~~Qi~talaYLeSkrfVHRDIAaRNiL---VsSp~CVKLaDFGLSR~~  541 (974)
T KOG4257|consen  467 IVMELAPLGELREYLQQNKDSLPLRTLTLYCYQICTALAYLESKRFVHRDIAARNIL---VSSPQCVKLADFGLSRYL  541 (974)
T ss_pred             EEEecccchhHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhchhhhhhhhhhee---ecCcceeeecccchhhhc
Confidence            99999999999999998765333  334557788888877      69999999998   667778899999999975

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.81  E-value=2.2e-19  Score=127.68  Aligned_cols=140  Identities=21%  Similarity=0.378  Sum_probs=114.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      +.++|...+.||+|+||.||++..      .++..+++|.+..........+.+|+++++.++||||+++++++...+..
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   82 (280)
T cd05092           3 KRRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTVLQHQHIVRFYGVCTEGRPL   82 (280)
T ss_pred             ChHhceeccccCCccCCeEEEeEEecCCCCCCceEEEEEecCcCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEecCCce
Confidence            346788889999999999999862      13567888887766666667899999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      ++++||+++++|.+++.....                ........+.+++.++.+      +|+|+++.|++   +..+.
T Consensus        83 ~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil---~~~~~  159 (280)
T cd05092          83 LMVFEYMRHGDLNRFLRSHGPDAKILAGGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCL---VGQGL  159 (280)
T ss_pred             EEEEecCCCCCHHHHHHhcCcchhhhcccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEE---EcCCC
Confidence            999999999999999876431                223334445677777776      57899999999   77788


Q ss_pred             Cccccccchhh
Q 040049          144 APKRKKFEEEK  154 (167)
Q Consensus       144 ~~~l~df~~~~  154 (167)
                      .++++|||+++
T Consensus       160 ~~kL~dfg~~~  170 (280)
T cd05092         160 VVKIGDFGMSR  170 (280)
T ss_pred             CEEECCCCcee
Confidence            89999999886

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.81  E-value=7.5e-20  Score=129.79  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=115.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.|...+.||+|+||.||++.. .++..+++|.+.... ....+.+.+|+..++.++|||++++++.+...+..++|+||
T Consensus         4 ~~y~~~~~l~~g~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   83 (277)
T cd06642           4 ELFTKLERIGKGSFGEVYKGIDNRTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYITRYYGSYLKGTKLWIIMEY   83 (277)
T ss_pred             HHHHHHHHhcCCCCeeEEEEEEcCCCeEEEEEEeccccchHHHHHHHHHHHHHHcCCCCccHhhhcccccCCceEEEEEc
Confidence            3466778899999999999984 467889999876432 33445688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+..........+..+.+++.++.++      |+++++.|++   +.++..++++|||.++.
T Consensus        84 ~~~~~L~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~---i~~~~~~~l~dfg~~~~  150 (277)
T cd06642          84 LGGGSALDLLKPGPLEETYIATILREILKGLDYLHSERKIHRDIKAANVL---LSEQGDVKLADFGVAGQ  150 (277)
T ss_pred             cCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhcCCeeccCCChheEE---EeCCCCEEEcccccccc
Confidence            9999999988765445555666677788877774      6899999999   77788899999998864

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=99.81  E-value=1.2e-19  Score=132.58  Aligned_cols=141  Identities=16%  Similarity=0.124  Sum_probs=114.0

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET-----   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----   82 (167)
                      ...++|.+.+.||+|+||.||++.. .++..+|+|.+....  ......+.+|+.+++.++||||+++++++...     
T Consensus        12 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07878          12 EVPERYQNLTPVGSGAYGSVCSAYDTRLRQKVAVKKLSRPFQSLIHARRTYRELRLLKHMKHENVIGLLDVFTPATSIEN   91 (343)
T ss_pred             hhhhhhhhheecccCCCeEEEEEEECCCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHhcCCCchhhhhhhhcccccccc
Confidence            3567899999999999999999984 578899999876432  22345677899999999999999999987543     


Q ss_pred             -CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 -EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 -~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       ...+++++++ +++|.+++..........+..+.+++.++.+      +|+|+++.|++   +..+..++++|||+++.
T Consensus        92 ~~~~~~~~~~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil---~~~~~~~kl~Dfg~~~~  167 (343)
T cd07878          92 FNEVYLVTNLM-GADLNNIVKCQKLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVA---VNEDCELRILDFGLARQ  167 (343)
T ss_pred             cCcEEEEeecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEE---ECCCCCEEEcCCcccee
Confidence             3468899987 6799888875555556666777888888877      47899999999   88888999999999874

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.81  E-value=3.1e-19  Score=127.33  Aligned_cols=137  Identities=21%  Similarity=0.146  Sum_probs=110.5

Q ss_pred             CcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           16 LNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      |...+.||+|+||.||.+. ..+++.+|+|.+.....   .....+.+|+.+++.++|++++++.+.+.+.+..++++||
T Consensus         2 f~~~~~ig~G~~g~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~l~~~~i~~~~~~~~~~~~~~lv~e~   81 (285)
T cd05630           2 FRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGESMALNEKQILEKVNSRFVVSLAYAYETKDALCLVLTL   81 (285)
T ss_pred             ceeeEEeecCCCeEEEEEEEcCCCceEEEEEEehhhccchHHHHHHHHHHHHHHhCCCCCeeeeeEEEecCCEEEEEEEe
Confidence            6677889999999999998 45789999998754321   2234567899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+....   .........+.+++.++.+      +|+|+++.|++   +.+...++++|||.+..
T Consensus        82 ~~g~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil---~~~~~~~~l~Dfg~~~~  151 (285)
T cd05630          82 MNGGDLKFHIYHMGEAGFEEGRAVFYAAEICCGLEDLHQERIVYRDLKPENIL---LDDHGHIRISDLGLAVH  151 (285)
T ss_pred             cCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEE---ECCCCCEEEeeccceee
Confidence            99999999886543   2333445556777777776      46899999999   77788899999998763

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.81  E-value=1.1e-19  Score=127.56  Aligned_cols=138  Identities=20%  Similarity=0.189  Sum_probs=116.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      +|.+.+.||+|+||.||++.. .++..+++|.+....   ......+.+|+..++.++|||++++++.+...+..++++|
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (258)
T cd05578           1 HFELLRVIGKGAFGKVCIVQKRDTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQELNHPFLVNLWYSFQDEENMYLVVD   80 (258)
T ss_pred             CceEEEEeccCCCceEEEEEEccCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHhCCCCChHHHHHhhcCCCeEEEEEe
Confidence            478899999999999999985 468899999876432   2345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQ-NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~-~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+.+... ..........+.+++.++.+      +|+++++.|++   +.++..++++|||.+..
T Consensus        81 ~~~~~~L~~~l~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil---~~~~~~~~l~d~~~~~~  149 (258)
T cd05578          81 LLLGGDLRYHLSQKVKFSEEQVKFWICEIVLALEYLHSKGIIHRDIKPDNIL---LDEQGHVHITDFNIATK  149 (258)
T ss_pred             CCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeE---EcCCCCEEEeecccccc
Confidence            99999999999876 33455566667778888776      46899999999   78888999999998763

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.81  E-value=8e-20  Score=133.52  Aligned_cols=141  Identities=26%  Similarity=0.345  Sum_probs=109.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecC-
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLET-   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~-   82 (167)
                      ..++|.+.+.||+|+||.||+|.+      .+++.+|+|.++... ......+.+|+.++..+ +|||++++++++... 
T Consensus         5 ~~~~~~~~~~lG~G~fg~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~~~~~~~~~~   84 (343)
T cd05103           5 PRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLGACTKPG   84 (343)
T ss_pred             chhHhcccccccCCccceEEEEeeccCCccccceeEEEEEeccCCChHHHHHHHHHHHHHHhccCCccHhhhcceeecCC
Confidence            456799999999999999999962      246789999886533 23345688999999999 689999999988654 


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc--------------------------------------------------------
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE--------------------------------------------------------  106 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~--------------------------------------------------------  106 (167)
                      ...++++||+++|+|.+++.....                                                        
T Consensus        85 ~~~~lv~ey~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (343)
T cd05103          85 GPLMVIVEFCKFGNLSNYLRSKRGEFVPYKTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEE  164 (343)
T ss_pred             CceEEEEeccCCCcHHHHHHhcCCccccccccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhh
Confidence            467899999999999999875321                                                        


Q ss_pred             ------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          107 ------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       107 ------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                                  ..........+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil---~~~~~~~kl~dfg~~~~  228 (343)
T cd05103         165 EAEQEDLYKKVLTLEDLICYSFQVAKGMEFLASRKCIHRDLAARNIL---LSENNVVKICDFGLARD  228 (343)
T ss_pred             hhhhhhhhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCccCeEE---EcCCCcEEEEecccccc
Confidence                        011112345677777776      57999999999   77888999999998863

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.81  E-value=2.6e-19  Score=126.28  Aligned_cols=138  Identities=15%  Similarity=0.235  Sum_probs=112.6

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      +|+..+.||+|++|.||.+. ..+++.+++|.+.....      ...+.+.+|+.+++.++|||++++++++...+..++
T Consensus         1 ~~~~~~~lg~g~~~~v~~~~~~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   80 (268)
T cd06630           1 EWLKGQQLGTGAFSSCYQARDVKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMARLNHPHIIRMLGATCEDSHFNL   80 (268)
T ss_pred             CccccceecCcCceEEEEEEEcCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHHcCCCceehhhceeccCCeEEE
Confidence            47788999999999999998 46789999998764331      124568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++.+... .....+..+.+++.++.++      |+++++.|++   +... ..++++|||.+..
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil---~~~~~~~~~l~dfg~~~~  153 (268)
T cd06630          81 FVEWMAGGSVSHLLSKYGAFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLL---IDSTGQRLRIADFGAAAR  153 (268)
T ss_pred             EEeccCCCcHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEEcccccccc
Confidence            9999999999999986543 3445555677888888774      6899999998   5544 4689999998764

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.81  E-value=8.7e-20  Score=130.58  Aligned_cols=138  Identities=24%  Similarity=0.275  Sum_probs=115.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +.|.....||+|+||.||++.. .++..+++|.+........+.+.+|+..++.++|||++++++.+...+..++++||+
T Consensus        22 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~ii~~~~~~~~~~~~~lv~e~~  101 (292)
T cd06658          22 EYLDSFIKIGEGSTGIVCIATEKHTGKQVAVKKMDLRKQQRRELLFNEVVIMRDYHHENVVDMYNSYLVGDELWVVMEFL  101 (292)
T ss_pred             HHHhhhhcccCCCCeEEEEEEECCCCCEEEEEEEecchHHHHHHHHHHHHHHHhCCCCcHHHHHHheecCCeEEEEEeCC
Confidence            4455567799999999999984 568899999886555555667889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++|.+++..........+..+.+++.++.++      |+|+++.|++   +.++..++++|||++.
T Consensus       102 ~~~~L~~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil---l~~~~~~kL~dfg~~~  166 (292)
T cd06658         102 EGGALTDIVTHTRMNEEQIATVCLSVLRALSYLHNQGVIHRDIKSDSIL---LTSDGRIKLSDFGFCA  166 (292)
T ss_pred             CCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEE---EcCCCCEEEccCcchh
Confidence            999999988655445555666677788888774      7999999999   7888889999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.81  E-value=3.5e-19  Score=128.61  Aligned_cols=139  Identities=20%  Similarity=0.174  Sum_probs=114.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc---cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG---KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~---~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|...+.||+|++|.||.+.. .++..+++|.+......   ....+..|+.++..++||||+++++.+...+..++++
T Consensus         1 ~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   80 (316)
T cd05574           1 KHFKKIKLLGKGDVGRVFLVRLKGTGKLFALKVLDKKEMIKRNKVKRVLTEQEILATLDHPFLPTLYASFQTETYLCLVM   80 (316)
T ss_pred             CceEEeeeecCCccEEEEEEEEcCCCcEEEEEEEeccccchHHHHHHHHHHHHHHHhCCCCCchhheeeeecCCEEEEEE
Confidence            4688899999999999999985 46899999987654322   4456888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+.+++|.+++....   ......+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+..
T Consensus        81 e~~~~~~L~~~~~~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~~l~dfg~~~~  152 (316)
T cd05574          81 DYCPGGELFRLLQRQPGKCLSEEVARFYAAEVLLALEYLHLLGIVYRDLKPENIL---LHESGHIMLSDFDLSKQ  152 (316)
T ss_pred             EecCCCCHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeE---EcCCCCEEEeecchhhc
Confidence            9999999999987542   13344445567788777774      7899999999   77788899999998763

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.81  E-value=2e-19  Score=128.85  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=113.5

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc-----cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG-----KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~-----~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +|.+.+.||+|++|.||++.. .+++.+++|.+......     ....+..|+.+++.++|+|++++++++.+.+..++|
T Consensus         1 ~y~~~~~lg~g~~~~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (298)
T cd07841           1 RYEKGKKLGEGTYAVVYKARDKETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQELKHPNIIGLLDVFGHKSNINLV   80 (298)
T ss_pred             CceeeeeeeeccccEEEEEEECCCCcEEEEEEEeccccccccchhhHHHHHHHHHHhhcCCCCChhhhheeecCCEEEEE
Confidence            477888999999999999984 47889999987654322     234567899999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+ +++|.+++....  ......+..+.+++.++.++      |+|+++.||+   +..+..++++|||.++.
T Consensus        81 ~e~~-~~~L~~~i~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil---l~~~~~~~l~dfg~~~~  151 (298)
T cd07841          81 FEFM-ETDLEKVIKDKSIVLTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLL---IASDGVLKLADFGLARS  151 (298)
T ss_pred             Eccc-CCCHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEE---EcCCCCEEEccceeeee
Confidence            9999 889999998654  24445556677888888775      7899999999   77888999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.81  E-value=4e-19  Score=124.96  Aligned_cols=139  Identities=23%  Similarity=0.331  Sum_probs=112.7

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|++.+.||+|++|.||++...++..+++|.+..... ..+.+.+|+.+++.++||+++++++++. .+..++++||
T Consensus         4 ~~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~k~~~~~~~-~~~~~~~E~~~l~~l~~~~i~~~~~~~~-~~~~~lv~e~   81 (260)
T cd05070           4 PRESLQLIKKLGNGQFGEVWMGTWNGNTKVAVKTLKPGTM-SPESFLEEAQIMKKLRHDKLVQLYAVVS-EEPIYIVTEY   81 (260)
T ss_pred             chHHhhhhheeccccCceEEEEEecCCceeEEEEecCCCC-CHHHHHHHHHHHHhcCCCceEEEEeEEC-CCCcEEEEEe
Confidence            3467899999999999999999876777899998764333 3467889999999999999999999874 4568899999


Q ss_pred             CCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++....   ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nil---i~~~~~~~l~dfg~~~~  151 (260)
T cd05070          82 MSKGSLLDFLKDGEGRALKLPNLVDMAAQVAAGMAYIERMNYIHRDLRSANIL---VGDGLVCKIADFGLARL  151 (260)
T ss_pred             cCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEE---EeCCceEEeCCceeeee
Confidence            99999999987643   1334445556677777766      57899999999   77788899999999864

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.81  E-value=2e-19  Score=129.31  Aligned_cols=141  Identities=24%  Similarity=0.356  Sum_probs=113.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-C-----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-A-----DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLET   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~-----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~   82 (167)
                      ...++|.+.+.||+|+||.||++.. .     ++..+|+|.+.... ....+.+.+|+.+++.+ +||||+++++.+...
T Consensus        32 ~~~~~~~~~~~ig~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~  111 (302)
T cd05055          32 FPRNNLSFGKTLGAGAFGKVVEATAYGLSKSDAVMKVAVKMLKPTAHSSEREALMSELKIMSHLGNHENIVNLLGACTIG  111 (302)
T ss_pred             ccHHHeEEcceeeccCCeeEEEEEEecCCCCCceeEEEEEecCccCChHHHHHHHHHHHHHHhccCCCCcceEEEEEecC
Confidence            3456789999999999999999863 1     34578999876543 33346788999999999 799999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      +..++++||+++|+|.++++....   ..........+++.++.+      +|+|+++.|++   +..+..++++|||.+
T Consensus       112 ~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~~l~dfg~~  188 (302)
T cd05055         112 GPILVITEYCCYGDLLNFLRRKRESFLTLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNVL---LTHGKIVKICDFGLA  188 (302)
T ss_pred             CceEEEEEcCCCCcHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeehhhhccceEE---EcCCCeEEECCCccc
Confidence            999999999999999999976432   333444556677777766      56899999999   777788899999998


Q ss_pred             h
Q 040049          154 K  154 (167)
Q Consensus       154 ~  154 (167)
                      +
T Consensus       189 ~  189 (302)
T cd05055         189 R  189 (302)
T ss_pred             c
Confidence            7

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.81  E-value=4.3e-19  Score=126.74  Aligned_cols=140  Identities=21%  Similarity=0.226  Sum_probs=111.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++++|.+.+.||+|+||.||++.. .++..+++|.+.... ......+.+|+..++.++|+|++++.+++...+..++++
T Consensus         3 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~lv~   82 (291)
T cd07870           3 AATSYLNLEKLGEGSYATVYKGISRINGQLVALKVISMKTEEGVPFTAIREASLLKGLKHANIVLLHDIIHTKETLTFVF   82 (291)
T ss_pred             ccceeEEEEEEEecCCEEEEEEEEcCCCcEEEEEEecccCcCCCcHHHHHHHHHHHhcCCCCEeEEEEEEecCCeEEEEE
Confidence            467899999999999999999984 578899999875432 222345678999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+. +++.+.+.....  ........+.+++.++.+      +|+|+++.|++   +.....++++|||.++.
T Consensus        83 e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil---~~~~~~~~l~Dfg~~~~  152 (291)
T cd07870          83 EYMH-TDLAQYMIQHPGGLHPYNVRLFMFQLLRGLAYIHGQHILHRDLKPQNLL---ISYLGELKLADFGLARA  152 (291)
T ss_pred             eccc-CCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEE---EcCCCcEEEeccccccc
Confidence            9996 578777764332  233344455677777766      57899999999   77888999999998863

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>PTZ00036 glycogen synthase kinase; Provisional

Probab=99.81  E-value=2e-19  Score=135.32  Aligned_cols=135  Identities=16%  Similarity=0.184  Sum_probs=103.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC--------C
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET--------E   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--------~   83 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+....    ....+|+.+++.++||||+++.+++...        .
T Consensus        65 ~~~y~~~~~LG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~----~~~~~Ei~il~~l~h~niv~l~~~~~~~~~~~~~~~~  140 (440)
T PTZ00036         65 NKSYKLGNIIGNGSFGVVYEAICIDTSEKVAIKKVLQDP----QYKNRELLIMKNLNHINIIFLKDYYYTECFKKNEKNI  140 (440)
T ss_pred             CCeEEEeEEEEeCCCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHhcCCCCCcceeeeEeecccccCCCce
Confidence            45799999999999999999984 578899999874322    2344799999999999999998877432        2


Q ss_pred             cceEEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFE  151 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~  151 (167)
                      .++++|||+++ +|.+++....     .+....+....+++.|+.|      +|+|+|+.||+   +... ..++|+|||
T Consensus       141 ~l~lvmE~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NIL---l~~~~~~vkL~DFG  216 (440)
T PTZ00036        141 FLNVVMEFIPQ-TVHKYMKHYARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLL---IDPNTHTLKLCDFG  216 (440)
T ss_pred             EEEEEEecCCc-cHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEE---EcCCCCceeeeccc
Confidence            46799999976 7877776421     2334455566788888877      47999999998   6544 468999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      +++.
T Consensus       217 la~~  220 (440)
T PTZ00036        217 SAKN  220 (440)
T ss_pred             cchh
Confidence            9873

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.81  E-value=4.2e-19  Score=126.12  Aligned_cols=139  Identities=26%  Similarity=0.349  Sum_probs=113.4

Q ss_pred             cCCcccceecccCceeEEEEEeC-----CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLA-----DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLE--TEVP   85 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~-----~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~   85 (167)
                      ++|...+.||+|+||.||++...     ++..+|+|.+...... ....+.+|+..++.+.|||++++++++..  ....
T Consensus         4 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l~~~~i~~~~~~~~~~~~~~~   83 (284)
T cd05038           4 RHLKFIKQLGEGHFGKVELCRYDPLGDNTGEQVAVKSLNHSGEEQHRSDFEREIEILRTLDHENIVKYKGVCEKPGGRSL   83 (284)
T ss_pred             hhchhheeeccCCCeeEEEeeecCCCCCCceEEEEEEeccccchHHHHHHHHHHHHHHhCCCCChheEEeeeecCCCCce
Confidence            56788899999999999999842     3678999988654443 45678999999999999999999999877  5578


Q ss_pred             eEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        84 ~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~~  158 (284)
T cd05038          84 RLIMEYLPSGSLRDYLQRHRDQINLKRLLLFSSQICKGMDYLGSQRYIHRDLAARNIL---VESEDLVKISDFGLAKV  158 (284)
T ss_pred             EEEEecCCCCCHHHHHHhCccccCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEE---EcCCCCEEEcccccccc
Confidence            99999999999999998655  2344445556677777766      57899999999   78888999999998874

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.81  E-value=4.1e-19  Score=124.49  Aligned_cols=138  Identities=22%  Similarity=0.273  Sum_probs=113.9

Q ss_pred             CCcccceecccCceeEEEEEeC-CCcEEEEEeccCCC-----cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVG-----KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~-----~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +|...+.||+|++|.||++... ++..+++|.+....     ....+.+.+|+.+++.++|||++++++++...+..+++
T Consensus         1 ~~~~~~~ig~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv   80 (258)
T cd06632           1 RWRKGELLGSGSFGSVYEGLNLDDGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSKLQHPNIVQYLGTEREEDNLYIF   80 (258)
T ss_pred             CccccceeeecCCceEEEEEEcCCCcEEEEEEEEEccccccchHHHHHHHHHHHHHHhcCCCCchheeeeEecCCeEEEE
Confidence            3677789999999999999854 78899999765432     12345788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++..... .....+..+.+++.++.++      |+++++.|++   +..+..++++|||.+..
T Consensus        81 ~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~---~~~~~~~kl~d~~~~~~  151 (258)
T cd06632          81 LELVPGGSLAKLLKKYGSFPEPVIRLYTRQILLGLEYLHDRNTVHRDIKGANIL---VDTNGVVKLADFGMAKQ  151 (258)
T ss_pred             EEecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEEccCcccee
Confidence            999999999999986542 4445555667777777774      7899999999   77888999999998764

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.80  E-value=1.8e-19  Score=127.08  Aligned_cols=139  Identities=18%  Similarity=0.247  Sum_probs=113.8

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|++|.||++. ..++..+++|.+...   .......+.+|+.+++.++|||++++++++...+..++++
T Consensus         2 ~~y~~~~~ig~g~~g~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~   81 (267)
T cd08229           2 ANFRIEKKIGRGQFSEVYRATCLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELNIVL   81 (267)
T ss_pred             chhhhhhhhcccCCeEEEEEeecCCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHHccCCchhhhhheeEeCCeEEEEE
Confidence            468888999999999999998 468899999976543   2234457889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++....     .+....+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+..
T Consensus        82 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nil---i~~~~~~~l~dfg~~~~  155 (267)
T cd08229          82 ELADAGDLSRMIKHFKKQKRLIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVF---ITATGVVKLGDLGLGRF  155 (267)
T ss_pred             EecCCCCHHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCCEEECcchhhhc
Confidence            9999999999887421     13344455567788888775      6899999999   77788899999998764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=99.80  E-value=5.6e-19  Score=126.02  Aligned_cols=138  Identities=23%  Similarity=0.313  Sum_probs=105.8

Q ss_pred             cCCcccceecccCceeEEEEEe-C-CCcEEEEEeccCCC--cccHHHHHHHHHHHhcC---CCCceeeeeeeeec-----
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-A-DERIVAVKKSKVVG--KGKLDEFINKVVILSQI---NYRNVVKLLGCCLE-----   81 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~-~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~~-----   81 (167)
                      ++|.+.+.||+|+||.||++.. . ++..+|+|.+....  ........+|+.+++.+   +||||+++++++..     
T Consensus         1 ~~Y~~~~~lg~G~~g~Vy~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~   80 (290)
T cd07862           1 QQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDR   80 (290)
T ss_pred             CCcceeeEeccCCCeEEEEEEEcCCCCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCC
Confidence            3688999999999999999984 3 46789999775432  22334556677666654   79999999998852     


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ....++++||+++ +|.+++.....   .....+..+.+++.++.+      +|+|++++|++   +..+..++++|||.
T Consensus        81 ~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil---~~~~~~~kl~Dfg~  156 (290)
T cd07862          81 ETKLTLVFEHVDQ-DLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL---VTSSGQIKLADFGL  156 (290)
T ss_pred             CCcEEEEEccCCC-CHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEE---EcCCCCEEEccccc
Confidence            3458899999964 89998875432   334555667788888877      47999999999   78888999999998


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       157 ~~~  159 (290)
T cd07862         157 ARI  159 (290)
T ss_pred             eEe
Confidence            864

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.80  E-value=4.9e-19  Score=124.96  Aligned_cols=139  Identities=24%  Similarity=0.418  Sum_probs=112.3

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CC---cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DE---RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~---~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|...+.||+|++|.||++... ++   ..+++|.+... .....+.+..|++++..++|||++++.+++...+..++
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (268)
T cd05063           4 PSHITKQKVIGAGEFGEVFRGILKMPGRKEVAVAIKTLKPGYTEKQRQDFLSEASIMGQFSHHNIIRLEGVVTKFKPAMI   83 (268)
T ss_pred             hHHceEeeEecCCCCccEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHhcCCCCCeeEEEEEEccCCCcEE
Confidence            457888899999999999999853 33   36888887643 23345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+++++|.+++.....  ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil---i~~~~~~kl~dfg~~~  155 (268)
T cd05063          84 ITEYMENGALDKYLRDHDGEFSSYQLVGMLRGIAAGMKYLSDMNYVHRDLAARNIL---VNSNLECKVSDFGLSR  155 (268)
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhhEE---EcCCCcEEECCCccce
Confidence            9999999999999876432  333445556667777766      57999999999   7778889999999876

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.80  E-value=5.2e-19  Score=124.98  Aligned_cols=133  Identities=22%  Similarity=0.265  Sum_probs=104.9

Q ss_pred             ceecccCceeEEEEEeC---CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           20 IVLGQGGQGTVHKGMLA---DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.||+|+||.||++...   ++..+++|.+..... .....+.+|+.+++.++|||++++++++.+....++++||+++|
T Consensus         1 ~~lg~G~~g~Vy~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~g   80 (269)
T cd05087           1 KEIGNGWFGKVILGEVNSGYTPAQVVVKELRVSASVQEQMKFLEEAQPYRSLQHSNLLQCLGQCTEVTPYLLVMEFCPLG   80 (269)
T ss_pred             CcccccCCceEEEEEEcCCCCceEEEEEecCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCCCcEEEEECCCCC
Confidence            35899999999999743   346788888765432 23346888999999999999999999999989999999999999


Q ss_pred             CHHHHHhhcCc------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           96 NLSDYLHEQNE------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        96 ~L~~~i~~~~~------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|.+++.....      ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil---~~~~~~~kL~dfg~~~~  149 (269)
T cd05087          81 DLKGYLRSCRKAELMTPDPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCL---LTADLTVKIGDYGLSHN  149 (269)
T ss_pred             cHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEE---EcCCCcEEECCcccccc
Confidence            99999975432      112223345677777776      56999999999   77788999999998863

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=99.80  E-value=2.7e-19  Score=131.29  Aligned_cols=140  Identities=20%  Similarity=0.222  Sum_probs=111.7

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----   82 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++++...     
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~   93 (355)
T cd07874          14 TVLKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKSLEE   93 (355)
T ss_pred             hhhhceeEEEEeeecCCEEEEEEEecCCCceEEEEEeCCcccChHHHHHHHHHHHHHHHhCCCchhceeeeeeccccccc
Confidence            3568899999999999999999984 47889999987643  223345678899999999999999999988643     


Q ss_pred             -CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 -EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 -~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       ...++++||+++ ++.+.+... ......+..+.+++.++.+      +|+|+|++||+   +..+..++++|||.++.
T Consensus        94 ~~~~~lv~e~~~~-~l~~~~~~~-l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nil---l~~~~~~kl~Dfg~~~~  168 (355)
T cd07874          94 FQDVYLVMELMDA-NLCQVIQME-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  168 (355)
T ss_pred             cceeEEEhhhhcc-cHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEE---ECCCCCEEEeeCccccc
Confidence             346899999976 677776543 2444555667788888877      57899999999   78888999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.80  E-value=4.1e-19  Score=126.33  Aligned_cols=139  Identities=19%  Similarity=0.145  Sum_probs=112.8

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|+....||+|++|.||++.. .+++.+++|.+....  ....+.+.+|+.+++.++|||++++++++...+..++++|
T Consensus         1 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~~v~e   80 (286)
T cd07847           1 EKYEKLSKIGEGSYGVVFKCRNRETGQIVAIKKFVESEDDPVIKKIALREIRMLKQLKHPNLVNLIEVFRRKRKLHLVFE   80 (286)
T ss_pred             CceeeeeeecccCCeEEEEEEECCCCcEEEEEEEeecccCccccHHHHHHHHHHHhCCCCCEeeeeeEEeeCCEEEEEEe
Confidence            4688899999999999999985 468899999875432  2233567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|..++.... .........+.+++.++.++      |+|+++.|++   +.+...++++|||.+..
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~~  149 (286)
T cd07847          81 YCDHTVLNELEKNPRGVPEHLIKKIIWQTLQAVNFCHKHNCIHRDVKPENIL---ITKQGQIKLCDFGFARI  149 (286)
T ss_pred             ccCccHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCChhhEE---EcCCCcEEECcccccee
Confidence            999988877765433 24445556677788887764      6899999999   77888899999998873

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.80  E-value=3.8e-19  Score=127.10  Aligned_cols=140  Identities=20%  Similarity=0.320  Sum_probs=113.4

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|.+.+.||+|+||.||++...      ++..+++|.+..........+.+|+..++.++|||++++++++...+..+
T Consensus         4 ~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~   83 (291)
T cd05094           4 RRDIVLKRELGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKFYGVCGDGDPLI   83 (291)
T ss_pred             hHHeEEeeeecccCCCeEEEeEeeccCCCCcceeeEEEecCCccHHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCceE
Confidence            356888899999999999999731      34568888876555555567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      +++||+++++|.+++.....                 +....+..+.+++.++.+      +|+|+++.|++   +..+.
T Consensus        84 lv~e~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil---~~~~~  160 (291)
T cd05094          84 MVFEYMKHGDLNKFLRAHGPDAMILVDGQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCL---VGANL  160 (291)
T ss_pred             EEEecCCCCcHHHHHHhcCcccccccccccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEE---EccCC
Confidence            99999999999999976431                 223444556677777777      47899999999   78888


Q ss_pred             Cccccccchhhh
Q 040049          144 APKRKKFEEEKW  155 (167)
Q Consensus       144 ~~~l~df~~~~~  155 (167)
                      .++++|||.+..
T Consensus       161 ~~~l~dfg~a~~  172 (291)
T cd05094         161 LVKIGDFGMSRD  172 (291)
T ss_pred             cEEECCCCcccc
Confidence            999999999863

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.80  E-value=4.9e-19  Score=125.95  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=114.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.||++.. .++..+++|.+....  ......+.+|+.+++.++|||++++++++...+..++|+||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~   80 (286)
T cd07832           1 RYKILGRIGEGAHGIVFKAKDRETGETVALKKVALRRLEGGIPNQALREIKALQACQHPYVVKLLDVFPHGSGFVLVMEY   80 (286)
T ss_pred             CceEEeecccCCCcEEEEEEECCCCceEEEEEEEcccccchhhHHHHHHHHHHHhCCCCCCcceeeEEecCCeeEEEecc
Confidence            578889999999999999985 578899999876543  33456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      + +++|.+.+.....  .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        81 ~-~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~---~~~~~~~~l~dfg~~~~  148 (286)
T cd07832          81 M-PSDLSEVLRDEERPLPEAQVKSYMRMLLKGVAYMHANGIMHRDLKPANLL---ISADGVLKIADFGLARL  148 (286)
T ss_pred             c-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEE---EcCCCcEEEeeeeeccc
Confidence            9 9999999876432  444556667778887776      47899999999   77788889999998773

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.80  E-value=7.9e-19  Score=123.08  Aligned_cols=138  Identities=24%  Similarity=0.375  Sum_probs=112.8

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      ..+|.+.+.||+|++|.||++.+..+..+++|.+.... .....+.+|++.++.++||+++++++++......++++||+
T Consensus         3 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~k~~~~~~-~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   81 (256)
T cd05112           3 PSELTLVQEIGSGQFGLVWLGYWLEKRKVAIKTIREGA-MSEEDFIEEAQVMMKLSHPKLVQLYGVCTERSPICLVFEFM   81 (256)
T ss_pred             hhHeEEEeeecCcccceEEEEEEeCCCeEEEEECCCCC-CCHHHHHHHHHHHHhCCCCCeeeEEEEEccCCceEEEEEcC
Confidence            35788889999999999999986567789999876432 23457889999999999999999999999889999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++
T Consensus        82 ~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~---i~~~~~~~l~d~g~~~  148 (256)
T cd05112          82 EHGCLSDYLRAQRGKFSQETLLGMCLDVCEGMAYLESSNVIHRDLAARNCL---VGENQVVKVSDFGMTR  148 (256)
T ss_pred             CCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCccccccccceEE---EcCCCeEEECCCccee
Confidence            99999999876432  334445556677776665      57899999999   7778889999999876

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.80  E-value=5.2e-20  Score=138.66  Aligned_cols=138  Identities=17%  Similarity=0.172  Sum_probs=115.0

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .+-|..++.||-|+||+|.+++ ..+...+|+|.++..+   .........|-.+|...+++++|+|+-.|.+++.+|+|
T Consensus       628 KSmFvkik~iGvGAFGeV~Lv~KvDT~~lYAmKTLrKaDVl~rnQvaHVKAERDILAEADn~WVVrLyySFQDkdnLYFV  707 (1034)
T KOG0608|consen  628 KSMFVKIKTIGVGAFGEVCLVRKVDTRALYAMKTLRKADVLMRNQVAHVKAERDILAEADNEWVVRLYYSFQDKDNLYFV  707 (1034)
T ss_pred             ccceEEEeeecccccceeEEEeecchhhHHHHhhhHHHHHHhhhhhhhhhhhhhhHhhcCCcceEEEEEEeccCCceEEE
Confidence            3456777899999999999887 5577788999765543   34455677888999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCc------hhhhhcccchhHHHHhhhccCCccccccchh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      |||++|||+..++...+. .+.+...+|-.+.+++      .++|||+|++|||   |+.++.+||+|||+.
T Consensus       708 MdYIPGGDmMSLLIrmgIFeE~LARFYIAEltcAiesVHkmGFIHRDiKPDNIL---IDrdGHIKLTDFGLC  776 (1034)
T KOG0608|consen  708 MDYIPGGDMMSLLIRMGIFEEDLARFYIAELTCAIESVHKMGFIHRDIKPDNIL---IDRDGHIKLTDFGLC  776 (1034)
T ss_pred             EeccCCccHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhccceecccCccceE---EccCCceeeeecccc
Confidence            999999999999998764 4555666666665555      4578999999999   999999999999984

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.80  E-value=4.1e-19  Score=126.92  Aligned_cols=145  Identities=24%  Similarity=0.368  Sum_probs=114.4

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeee
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCC   79 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~   79 (167)
                      ++....++|.+.+.||+|++|.||++...      ....+++|.+... .......+.+|+.++..+ +|||++++++++
T Consensus         6 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~   85 (293)
T cd05053           6 EWELPRDRLTLGKPLGEGAFGQVVKAEAVGLDNPNETSTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGVC   85 (293)
T ss_pred             ccccCHhHeEEeeEecccccccEEEEEEecCCCCCCceeEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEE
Confidence            34556778999999999999999999742      2367899987643 223445688899999999 799999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHH
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWK  136 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~  136 (167)
                      ...+..++++||+++|+|.+++.....                 ........+.+++.++.+      +|+|+++.|++ 
T Consensus        86 ~~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil-  164 (293)
T cd05053          86 TQEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPDDPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVL-  164 (293)
T ss_pred             cCCCCeEEEEEeCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEE-
Confidence            999999999999999999999975321                 122333456667777766      57899999999 


Q ss_pred             HhhhccCCccccccchhhh
Q 040049          137 QQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~~  155 (167)
                        +..+..++++|||.++.
T Consensus       165 --~~~~~~~kL~Dfg~~~~  181 (293)
T cd05053         165 --VTEDHVMKIADFGLARD  181 (293)
T ss_pred             --EcCCCeEEeCccccccc
Confidence              77888999999998873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.80  E-value=7.3e-19  Score=125.54  Aligned_cols=138  Identities=25%  Similarity=0.371  Sum_probs=108.7

Q ss_pred             CCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      +|.+.+.||+|+||.||++...      ....+++|.+.... ......+.+|+..++.++||||+++++.+...+..++
T Consensus         1 ~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l   80 (290)
T cd05045           1 NLVLGKTLGEGEFGKVVKATAFRLKGRAGYTTVAVKMLKENASSSELRDLLSEFNLLKQVNHPHVIKLYGACSQDGPLLL   80 (290)
T ss_pred             CccccccccCcCCcceEEEEEecCCCCCcceeEEEEecCCCCCHHHHHHHHHHHHHHhhCCCCCEeeEEEEEecCCCcEE
Confidence            4778899999999999999742      12467888765432 2334678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-------------------------chHhhHHHHHHHHcCchh------hhhcccchhHHH
Q 040049           88 VYEYIPNGNLSDYLHEQNE-------------------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWK  136 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-------------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~  136 (167)
                      ++||+++++|.+++.....                         .....+..+.+++.++.+      +|+|+++.|++ 
T Consensus        81 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nil-  159 (290)
T cd05045          81 IVEYAKYGSLRSFLRESRKVGPSYLGSDGNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVL-  159 (290)
T ss_pred             EEEecCCCCHHHHHHhcCCccccccccccccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEE-
Confidence            9999999999999875321                         122334556667777766      57999999999 


Q ss_pred             HhhhccCCccccccchhhh
Q 040049          137 QQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~~  155 (167)
                        +..+..++++|||.++.
T Consensus       160 --l~~~~~~kl~dfg~~~~  176 (290)
T cd05045         160 --VAEGRKMKISDFGLSRD  176 (290)
T ss_pred             --EcCCCcEEecccccccc
Confidence              77788899999999873

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.80  E-value=5.3e-19  Score=124.36  Aligned_cols=138  Identities=21%  Similarity=0.322  Sum_probs=111.7

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|+||.||++....+..+++|.+... ....+.+.+|+.+++.++|+|++++++.+.. ...++++||
T Consensus         4 ~~~~~~~~~~lg~g~~~~vy~~~~~~~~~~~iK~~~~~-~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~-~~~~~v~e~   81 (260)
T cd05073           4 PRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVTK-EPIYIITEF   81 (260)
T ss_pred             cccceeEEeEecCccceEEEEEEecCCccEEEEecCCC-hhHHHHHHHHHHHHHhcCCCCcceEEEEEcC-CCeEEEEEe
Confidence            45688999999999999999998666677899877533 2334678899999999999999999999877 778999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        82 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~---i~~~~~~~l~d~~~~~  150 (260)
T cd05073          82 MAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANIL---VSASLVCKIADFGLAR  150 (260)
T ss_pred             CCCCcHHHHHHhCCccccCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEE---EcCCCcEEECCCccee
Confidence            999999999986432   223333445667777766      57899999999   7888899999999876

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.80  E-value=5.3e-19  Score=126.08  Aligned_cols=140  Identities=20%  Similarity=0.348  Sum_probs=112.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++...      ++..+++|.+.... ......+.+|+.+++.++|||++++++++...+.
T Consensus         3 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l~h~~iv~~~~~~~~~~~   82 (288)
T cd05050           3 PRNNIEYVRDIGQGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDHPNIVKLLGVCAVGKP   82 (288)
T ss_pred             ChHhceecccccccccccEEEEEEcccCCCCcceeEEEEecCCCcCHHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCc
Confidence            4578999999999999999999742      45788999876443 2334568889999999999999999999999889


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-----------------------chHhhHHHHHHHHcCchh------hhhcccchhHH
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-----------------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIW  135 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-----------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~  135 (167)
                      .++++||+++|+|.+++.....                       .....+..+.+++.++.+      +|+|+++.|++
T Consensus        83 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil  162 (288)
T cd05050          83 MCLLFEYMAYGDLNEFLRHRSPRAQCSLSHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCL  162 (288)
T ss_pred             cEEEEecCCCCCHHHHHHHcCccccccccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheE
Confidence            9999999999999999985321                       122234556667777766      57899999999


Q ss_pred             HHhhhccCCccccccchhh
Q 040049          136 KQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~  154 (167)
                         +.....++++|||.++
T Consensus       163 ---~~~~~~~~l~dfg~~~  178 (288)
T cd05050         163 ---VGENMVVKIADFGLSR  178 (288)
T ss_pred             ---ecCCCceEECccccce
Confidence               7788889999999876

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.80  E-value=4.4e-19  Score=125.47  Aligned_cols=138  Identities=19%  Similarity=0.233  Sum_probs=110.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---c-------cHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---G-------KLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~-------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      +|.+.+.||+|++|.||++.. .+++.+++|.+.....   .       ..+.+..|+.+++.++|||++++++++...+
T Consensus         2 ~~~~~~~lg~g~~~~vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   81 (272)
T cd06629           2 KWVKGELIGKGTYGRVYLALNVTTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKDLDHLNIVQYLGFETTEE   81 (272)
T ss_pred             ceeecceecccCceEEEEEeecCCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHhcCCCCcceEEEEeccCC
Confidence            467788999999999999984 5788999997643211   1       1245778999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++++||+++++|.+.+..... ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        82 ~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil---~~~~~~~~l~d~~~~~~  157 (272)
T cd06629          82 YLSIFLEYVPGGSIGSCLRTYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLL---VDADGICKISDFGISKK  157 (272)
T ss_pred             ceEEEEecCCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEE---EcCCCeEEEeecccccc
Confidence            99999999999999999887542 233333445677777766      56899999999   77888999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.80  E-value=1.7e-20  Score=131.66  Aligned_cols=145  Identities=19%  Similarity=0.113  Sum_probs=121.1

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      -++|..+++||+|.||+|..|+ ..+++.+|+|+++..   ........+.|.++++..+||.+..+--.|.+.+.+++|
T Consensus       167 m~dFdfLKvLGkGTFGKVIL~rEKat~k~YAiKIlkKeviiakdEVAHTlTE~RVL~~~~HPFLt~LKYsFQt~drlCFV  246 (516)
T KOG0690|consen  167 MEDFDFLKVLGKGTFGKVILCREKATGKLYAIKILKKEVIIAKDEVAHTLTENRVLQNCRHPFLTSLKYSFQTQDRLCFV  246 (516)
T ss_pred             cchhhHHHHhcCCccceEEEEeecccCceeehhhhhhhheeehHHhhhhhhHHHHHHhccCcHHHHhhhhhccCceEEEE
Confidence            3688899999999999999998 668999999987653   344566788899999999999999998888999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhhhhhhhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLK  161 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~~i~h  161 (167)
                      |||..||.|+-.++.... .......+-..|+.+|.|+|      ||+|.+|.+   +++++..|++|||+.+  .+|..
T Consensus       247 MeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLl---LDkDGHIKitDFGLCK--E~I~~  321 (516)
T KOG0690|consen  247 MEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLL---LDKDGHIKITDFGLCK--EEIKY  321 (516)
T ss_pred             EEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhhe---eccCCceEeeecccch--hcccc
Confidence            999999999888776542 33344455667888999988      799999999   9999999999999987  34443


Q ss_pred             h
Q 040049          162 R  162 (167)
Q Consensus       162 r  162 (167)
                      +
T Consensus       322 g  322 (516)
T KOG0690|consen  322 G  322 (516)
T ss_pred             c
Confidence            3

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.80  E-value=7.8e-19  Score=124.47  Aligned_cols=138  Identities=19%  Similarity=0.207  Sum_probs=113.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCC---CCceeeeeeeeecCCcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQIN---YRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~---h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .|+..+.||+|+||.+|+|.. .++..+++|.+... .......+.+|+.+++.++   |||++++++++...+..++++
T Consensus         2 ~y~~~~~l~~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~~~~~~~~lv~   81 (277)
T cd06917           2 LYQRLELIGRGAYGAVYRGKHVPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSYLKGPRLWIIM   81 (277)
T ss_pred             hhhhhhheeccCCceEEEEEEcCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeeeeeCCEEEEEE
Confidence            577888999999999999994 57889999987643 3344567888998888886   999999999999889999999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.++++.........+..+.+++.++.+      +|+++++.|++   +.....++++|||.+..
T Consensus        82 e~~~~~~L~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~---i~~~~~~~l~dfg~~~~  150 (277)
T cd06917          82 EYAEGGSVRTLMKAGPIAEKYISVIIREVLVALKYIHKVGVIHRDIKAANIL---VTNTGNVKLCDFGVAAL  150 (277)
T ss_pred             ecCCCCcHHHHHHccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEE---EcCCCCEEEccCCceee
Confidence            99999999999876533444555556677777766      57899999999   77788899999998764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.80  E-value=2.3e-19  Score=127.64  Aligned_cols=139  Identities=21%  Similarity=0.203  Sum_probs=112.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|++|.||++.. .+++.+++|.+.....  ...+.+.+|+++++.++|||++++++++.+++..++++|
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   80 (286)
T cd07846           1 EKYENLGLVGEGSYGMVMKCKHKETGQIVAIKKFLESEDDKMVKKIAMREIRMLKQLRHENLVNLIEVFRRKKRLYLVFE   80 (286)
T ss_pred             CceeEeeeeccCCCeEEEEEEECCCCCEEEEEeHhhccCcchhhHHHHHHHHHHHhcCCcchhhHHHhcccCCeEEEEEe
Confidence            4688899999999999999995 4688999997654322  234567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|..+..... .........+.+++.++.++      |+++++.|++   +.++..++++|||++..
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~---~~~~~~~~l~dfg~~~~  149 (286)
T cd07846          81 FVDHTVLDDLEKYPNGLDESRVRKYLFQILRGIEFCHSHNIIHRDIKPENIL---VSQSGVVKLCDFGFART  149 (286)
T ss_pred             cCCccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---ECCCCcEEEEeeeeeee
Confidence            999988887765432 24445555667788877774      6899999999   78888999999998763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.80  E-value=6.3e-19  Score=123.44  Aligned_cols=138  Identities=24%  Similarity=0.321  Sum_probs=116.2

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|...+.||+|++|.+|++... ++..+++|.+.....  .+.+.+|++.++.++|||++++.+.+......++++||
T Consensus         2 ~~~y~~~~~i~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~--~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~   79 (256)
T cd06612           2 EEVFDILEKLGEGSYGSVYKAIHKETGQVVAIKVVPVEED--LQEIIKEISILKQCDSPYIVKYYGSYFKNTDLWIVMEY   79 (256)
T ss_pred             cccchhhhhhcCCCCeEEEEEEEcCCCcEEEEEEeecHHH--HHHHHHHHHHHHhCCCCcEeeeeeeeecCCcEEEEEec
Confidence            367899999999999999999854 578899998764332  67889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....  .....+..+.+++.++.+      +|+++++.|++   +..+..++++|||++..
T Consensus        80 ~~~~~L~~~l~~~~~~l~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~---~~~~~~~~l~dfg~~~~  148 (256)
T cd06612          80 CGAGSVSDIMKITNKTLTEEEIAAILYQTLKGLEYLHSNKKIHRDIKAGNIL---LNEEGQAKLADFGVSGQ  148 (256)
T ss_pred             CCCCcHHHHHHhCccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEE---ECCCCcEEEcccccchh
Confidence            999999999875432  445556667777777766      57899999999   77888899999998774

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.80  E-value=1.3e-18  Score=122.23  Aligned_cols=139  Identities=24%  Similarity=0.233  Sum_probs=115.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|++|.+|++.. .+++.+++|.+..... .....+.+|+..+..++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~~i~~g~~~~v~~~~~~~~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (264)
T cd06623           1 SDLERVKVLGQGSSGVVYKVRHKPTGKIYALKKIHVDGDEEFRKQLLRELKTLRSCESPYVVKCYGAFYKEGEISIVLEY   80 (264)
T ss_pred             CcceeeeeeeecCCeEEEEEEEcCCCcEEEEEEeccCcchHHHHHHHHHHHHHHhcCCCCeeeEEEEEccCCeEEEEEEe
Confidence            4688899999999999999985 4689999998765543 4456789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++..... .....+..+.+++.++.+       +|+++++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~l~~~~~l~~~~~~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~---~~~~~~~~l~df~~~~~  149 (264)
T cd06623          81 MDGGSLADLLKKVGKIPEPVLAYIARQILKGLDYLHTKRHIIHRDIKPSNLL---INSKGEVKIADFGISKV  149 (264)
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhccCCCccCCCCHHHEE---ECCCCCEEEccCcccee
Confidence            999999999986432 444555666666666655       56699999999   78888999999998773

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.80  E-value=6.2e-19  Score=124.63  Aligned_cols=141  Identities=18%  Similarity=0.272  Sum_probs=113.0

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecC------
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLET------   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~------   82 (167)
                      ...+.|.+.+.||+|+||.||++.. .+++.+++|.+.... .....+..|+.++..+ +|||++++.+.+...      
T Consensus         3 ~~~~~y~~~~~lg~g~~g~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (272)
T cd06637           3 DPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPPGMD   81 (272)
T ss_pred             ChhhhhhHHHheeecCCeEEEEEEEcCCCcEEEEEEEEcCC-ccHHHHHHHHHHHHHhcCCCCeeeEeeEEeecCCCCCC
Confidence            3567788899999999999999984 568889999876433 3446778899999988 699999999998653      


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ...++++||+++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +.+...++++|||++
T Consensus        82 ~~~~iv~e~~~~~~L~~~l~~~~~~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nil---i~~~~~~~l~Dfg~~  158 (272)
T cd06637          82 DQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVL---LTENAEVKLVDFGVS  158 (272)
T ss_pred             cEEEEEEEcCCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEE---ECCCCCEEEccCCCc
Confidence            357899999999999999886432   333444556778888877      46899999999   788889999999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      ..
T Consensus       159 ~~  160 (272)
T cd06637         159 AQ  160 (272)
T ss_pred             ee
Confidence            63

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.80  E-value=3.5e-19  Score=129.88  Aligned_cols=133  Identities=14%  Similarity=0.055  Sum_probs=97.8

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC--CCcEEEEEeccCC-----CcccHHHHHHHHHHHhcCCCCceee-eeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA--DERIVAVKKSKVV-----GKGKLDEFINKVVILSQINYRNVVK-LLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~avk~~~~~-----~~~~~~~~~~e~~~~~~l~h~~i~~-l~~~~~   80 (167)
                      .....++|.+.+.||+|+||+||+|...  +++.+|+|.+...     .......+.+|+++++.++|+|+++ +++.  
T Consensus        13 ~~~~~~~Y~~~~~IG~G~fg~Vy~a~~~~~~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L~h~~iv~~l~~~--   90 (365)
T PRK09188         13 IPALSARFVETAVLKRDVFSTVERGYFAGDPGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTVRGIGVVPQLLAT--   90 (365)
T ss_pred             cccccCCceEccEEeecCcEEEEEEEEcCCCCeEEEEEEecccccccccHHHHHHHHHHHHHHHhccCCCCCcEEEEc--
Confidence            3445678999999999999999999843  5777899875432     1223456889999999999999985 4432  


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcc-cchhHHHHhhhccCCccccccchh
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKK-KKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~-~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                        +..++||||++|++|.. +....   .  .....+++.++.+      +|+|+ ||+|++   +..+..++|+|||+|
T Consensus        91 --~~~~LVmE~~~G~~L~~-~~~~~---~--~~~~~~i~~aL~~lH~~gIiHrDL~KP~NIL---v~~~~~ikLiDFGlA  159 (365)
T PRK09188         91 --GKDGLVRGWTEGVPLHL-ARPHG---D--PAWFRSAHRALRDLHRAGITHNDLAKPQNWL---MGPDGEAAVIDFQLA  159 (365)
T ss_pred             --CCcEEEEEccCCCCHHH-hCccc---h--HHHHHHHHHHHHHHHHCCCeeCCCCCcceEE---EcCCCCEEEEECccc
Confidence              45799999999999963 22111   1  1223344455544      68999 999999   666778899999998


Q ss_pred             h
Q 040049          154 K  154 (167)
Q Consensus       154 ~  154 (167)
                      +
T Consensus       160 ~  160 (365)
T PRK09188        160 S  160 (365)
T ss_pred             e
Confidence            8

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.80  E-value=7.3e-19  Score=125.56  Aligned_cols=148  Identities=23%  Similarity=0.232  Sum_probs=117.3

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      +..+++...+++|.+.+.||+|+||.||++.. .+++.+++|.+.... .....+.+|+.+++.+ +|||++++++++..
T Consensus        12 ~~~~~~~~~~~~y~~~~~l~~g~~~~vy~~~~~~~~~~~aik~~~~~~-~~~~~~~~e~~~l~~l~~h~ni~~~~~~~~~   90 (291)
T cd06639          12 LGLESLGDPTDTWEIIETIGKGTYGKVYKVTNKKDGSLAAVKILDPIS-DVDEEIEAEYNILQSLPNHPNVVKFYGMFYK   90 (291)
T ss_pred             hhcccCCCCCCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEecccc-cHHHHHHHHHHHHHHhcCCCCeEEEEEEEEe
Confidence            44566677889999999999999999999984 578899999875432 2345677888888888 79999999999865


Q ss_pred             C-----CcceEEEecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           82 T-----EVPLLVYEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        82 ~-----~~~~lv~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      .     +..++++||+++++|.++++..     .......+..+.+++.++.+      +|+|+++.|++   +..+..+
T Consensus        91 ~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nil---i~~~~~~  167 (291)
T cd06639          91 ADKLVGGQLWLVLELCNGGSVTELVKGLLICGQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNIL---LTTEGGV  167 (291)
T ss_pred             ccccCCCeeEEEEEECCCCcHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEE---EcCCCCE
Confidence            4     3579999999999999988642     12344455567777888877      56899999999   7788889


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +++|||.+..
T Consensus       168 kl~dfg~~~~  177 (291)
T cd06639         168 KLVDFGVSAQ  177 (291)
T ss_pred             EEeecccchh
Confidence            9999998773

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.80  E-value=1.2e-18  Score=122.96  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=111.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-----ccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-----GKLDEFINKVVILSQINYRNVVKLLGCCLET--EVP   85 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-----~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~   85 (167)
                      .+|...+.+|+|+||.||++.. .++..+++|.+.....     .....+.+|+.+++.++|||++++++++...  +..
T Consensus         2 ~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (266)
T cd06651           2 INWRRGKLLGQGAFGRVYLCYDVDTGRELAAKQVQFDPESPETSKEVSALECEIQLLKNLQHERIVQYYGCLRDRAEKTL   81 (266)
T ss_pred             CCccccceecCCCCEEEEEEEEcCCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHHcCCCCeeeEEEEEEcCCCCEE
Confidence            4688899999999999999984 5788999997653321     2234678899999999999999999988653  567


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++++|.+.+..... .....+..+.+++.++.+      +|+++++.|++   +..+..++++|||.++.
T Consensus        82 ~l~~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil---~~~~~~~~l~dfg~~~~  155 (266)
T cd06651          82 TIFMEYMPGGSVKDQLKAYGALTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANIL---RDSAGNVKLGDFGASKR  155 (266)
T ss_pred             EEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE---ECCCCCEEEccCCCccc
Confidence            899999999999999876543 444455566777777766      56899999999   77788899999998763

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.80  E-value=6.8e-19  Score=123.29  Aligned_cols=137  Identities=30%  Similarity=0.449  Sum_probs=112.7

Q ss_pred             CcccceecccCceeEEEEEeC-CC----cEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           16 LNVNIVLGQGGQGTVHKGMLA-DE----RIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~-~~----~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +.+.+.||.|+||.||++... .+    ..+++|.+...... ....+..|+..+..++|||++++++.+.+.+..++++
T Consensus         1 ~~~~~~lg~g~~g~v~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~i~   80 (258)
T smart00219        1 LTLGKKLGEGAFGEVYKGTLKGLSGEKEVEVAVKTLKEDADEQQIEEFLREARIMRKLDHPNIVKLLGVCTEEEPLMIVM   80 (258)
T ss_pred             CcccceeccCCCcceEEEEecCCCCCCCceEEEEEccCCCChHHHHHHHHHHHHHHhcCCCchheEEEEEcCCCeeEEEE
Confidence            356688999999999999853 33    78999988654433 4567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++....   ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil---~~~~~~~~l~dfg~~~~  152 (258)
T smart00219       81 EYMEGGDLLDYLRKNRPKELSLSDLLSFALQIARGMEYLESKNFIHRDLAARNCL---VGENLVVKISDFGLSRD  152 (258)
T ss_pred             eccCCCCHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHhcCCeeecccccceEE---EccCCeEEEcccCCcee
Confidence            9999999999998654   3445555667777777766      57899999999   78888899999998863

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.79  E-value=7.6e-19  Score=124.12  Aligned_cols=137  Identities=24%  Similarity=0.430  Sum_probs=107.5

Q ss_pred             CcccceecccCceeEEEEEeC-C---CcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-----
Q 040049           16 LNVNIVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-----   84 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-----   84 (167)
                      |.+.+.||+|+||.||.+... +   +..+|+|.+....  ......+.+|+..++.++|||++++++++...+.     
T Consensus         1 ~~~~~~lg~G~~g~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   80 (273)
T cd05035           1 LKLGKILGEGEFGSVMEGQLSQDDGSQLKVAVKTMKLDIHTYSEIEEFLSEAACMKDFDHPNVMKLIGVCFEASSLQKIP   80 (273)
T ss_pred             CccccccCcCCCceEEEEEEecCCCCcceEEEEEeccCcCCHHHHHHHHHHHHHHHhCCCCCeeeEEeeeccCCccccCc
Confidence            567789999999999999842 2   4679999876432  2334678899999999999999999998866543     


Q ss_pred             -ceEEEecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccccc
Q 040049           85 -PLLVYEYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        85 -~~lv~e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                       .++++||+++|+|...+....       .+.......+.+++.++.+      +|+|++++|++   +.+...++++||
T Consensus        81 ~~~~v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~df  157 (273)
T cd05035          81 KPMVILPFMKHGDLHSFLLYSRLGGLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCM---LREDMTVCVADF  157 (273)
T ss_pred             ccEEEEeccCCCCHHHHHHHhhccCCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEE---ECCCCeEEECCc
Confidence             789999999999998886432       1223344456777777776      46899999999   778888999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       158 g~~~~  162 (273)
T cd05035         158 GLSKK  162 (273)
T ss_pred             cceee
Confidence            99874

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.79  E-value=8.1e-19  Score=123.00  Aligned_cols=134  Identities=28%  Similarity=0.412  Sum_probs=111.9

Q ss_pred             ceecccCceeEEEEEeC-C---CcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++... .   +..+++|.+...... ..+.+.+|+..+..++|+|++++++++......++++||+++
T Consensus         1 ~~ig~g~~g~v~~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   80 (262)
T cd00192           1 KKLGEGAFGEVYKGKLKGKDGKTTEVAVKTLKEDASEEERKDFLKEARVMKKLGHPNVVRLLGVCTEEEPLYLVLEYMEG   80 (262)
T ss_pred             CccccCCceEEEEEEEecCCCCCceEEeEeeccccchhHHHHHHHHHHHHhhcCCCChheeeeeecCCCceEEEEEeccC
Confidence            46899999999999853 3   788999988755433 367788999999999999999999999999999999999999


Q ss_pred             CCHHHHHhhc---------C-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           95 GNLSDYLHEQ---------N-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        95 g~L~~~i~~~---------~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ++|.+++...         . .+....+..+.+++.++.+      +|+|+++.|++   +.++..++++|||.+...
T Consensus        81 ~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nil---i~~~~~~~l~dfg~~~~~  155 (262)
T cd00192          81 GDLLDYLRKSRPVFPSPEKSTLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCL---VGEDLVVKISDFGLSRDV  155 (262)
T ss_pred             CcHHHHHhhccccccccccccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEE---ECCCCcEEEccccccccc
Confidence            9999999875         2 2455566667777777776      46899999999   888899999999998743

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.79  E-value=5e-19  Score=125.90  Aligned_cols=138  Identities=19%  Similarity=0.273  Sum_probs=109.9

Q ss_pred             cCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .+|.+.+.||+|+||.||++...      .+..+|+|.+..... ...+.+.+|+.++..++||||+++++++...+..+
T Consensus         5 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~   84 (283)
T cd05091           5 STVRFMEELGEDRFGKVYKGHLFGTAPGEQTQAVAIKTLKDKAEGPLREEFKHEAMMRSRLQHPNIVCLLGVVTKEQPLS   84 (283)
T ss_pred             HHHHHHHHhCCCCCCeEEEEEEecCCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcCCCceE
Confidence            45788899999999999999742      247899998864432 23456888999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           87 LVYEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      +++||+++++|.+++....                 ......+..+.+++.++.+      +|+|+|+.|++   +..+.
T Consensus        85 ~~~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil---~~~~~  161 (283)
T cd05091          85 MIFSYCSHSDLHEFLVMRSPHSDVGSTDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVL---VFDKL  161 (283)
T ss_pred             EEEEcCCCCcHHHHHHhcCCCccccccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheE---ecCCC
Confidence            9999999999999986321                 1222234456677777776      57999999999   77778


Q ss_pred             Cccccccchhh
Q 040049          144 APKRKKFEEEK  154 (167)
Q Consensus       144 ~~~l~df~~~~  154 (167)
                      .++++|||+++
T Consensus       162 ~~kl~Dfg~~~  172 (283)
T cd05091         162 NVKISDLGLFR  172 (283)
T ss_pred             ceEeccccccc
Confidence            89999999876

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.79  E-value=6.1e-19  Score=125.16  Aligned_cols=141  Identities=22%  Similarity=0.299  Sum_probs=110.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|++|.||++...      .+..+++|.+..... .....+.+|+.+++.++|||++++++++.+.+.
T Consensus         4 ~~~~~~~~~~lg~g~~g~vy~~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~   83 (277)
T cd05036           4 PRDSITLLRALGHGAFGEVYEGLYRGRDGDAVELQVAVKTLPESCSEQDESDFLMEALIMSKFNHQNIVRLIGVSFERLP   83 (277)
T ss_pred             CHHHcEeeeECCCCCCCcEEEEEEecCCCCCCceeEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            3567899999999999999999853      456788887754432 233568889999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc---CCccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG---LAPKR  147 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~---~~~~l  147 (167)
                      .++++||+++++|.+++.....        ........+.+++.++.+      +|+|++++||+   +...   ..+++
T Consensus        84 ~~lv~e~~~g~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil---~~~~~~~~~~kl  160 (277)
T cd05036          84 RFILLELMAGGDLKSFLRENRPRPERPSSLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCL---LTCKGPGRVAKI  160 (277)
T ss_pred             cEEEEecCCCCCHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEE---EeccCCCcceEe
Confidence            9999999999999999976532        122233345667777776      57899999998   5432   35789


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.++.
T Consensus       161 ~dfg~~~~  168 (277)
T cd05036         161 ADFGMARD  168 (277)
T ss_pred             ccCccccc
Confidence            99998873

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.79  E-value=1.1e-18  Score=122.84  Aligned_cols=138  Identities=22%  Similarity=0.324  Sum_probs=110.5

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|++|.||++....+..+++|.+.... ...+.+.+|+.+++.++|||++++++++. .+..++++||+
T Consensus         5 ~~~~~~~~~ig~g~~~~v~~~~~~~~~~~~lK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~~v~e~~   82 (260)
T cd05069           5 RESLRLDVKLGQGCFGEVWMGTWNGTTKVAIKTLKPGT-MMPEAFLQEAQIMKKLRHDKLVPLYAVVS-EEPIYIVTEFM   82 (260)
T ss_pred             hHHeeeeeeecCcCCCeEEEEEEcCCceEEEEEcccCC-ccHHHHHHHHHHHHhCCCCCeeeEEEEEc-CCCcEEEEEcC
Confidence            35688899999999999999986666678999775432 33467889999999999999999998874 45688999999


Q ss_pred             CCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++|.+++.....   ..........+++.++.+      +|+|+++.|++   +.++..++++|||.+..
T Consensus        83 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nil---l~~~~~~~l~dfg~~~~  151 (260)
T cd05069          83 GKGSLLDFLKEGDGKYLKLPQLVDMAAQIADGMAYIERMNYIHRDLRAANIL---VGDNLVCKIADFGLARL  151 (260)
T ss_pred             CCCCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccCcceEE---EcCCCeEEECCCccceE
Confidence            99999999976432   233344556677777776      46899999999   78888899999999874

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.79  E-value=8e-19  Score=124.76  Aligned_cols=138  Identities=22%  Similarity=0.324  Sum_probs=107.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ++|.+.+.||+|+||.||++.+ .++.    .+++|.+..... .....+..|+..+..+.||||+++++++. ....++
T Consensus         7 ~~~~~~~~lg~G~~~~vy~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~l~~l~h~~iv~~~~~~~-~~~~~~   85 (279)
T cd05111           7 TELRKLKLLGSGVFGTVHKGIWIPEGDSIKIPVAIKTIQDRSGRQTFQEITDHMLAMGSLDHAYIVRLLGICP-GASLQL   85 (279)
T ss_pred             hhceeccccCccCCcceEEEEEcCCCCceeeEEEEeecccccchHHHHHHHHHHHHHhcCCCCCcceEEEEEC-CCccEE
Confidence            5788889999999999999984 3454    467776643322 23356777888889999999999999875 445788


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++|+|.+++.....  ..........+++.++.+      +|+|+++.|++   +..+..++++|||.+++
T Consensus        86 i~e~~~~gsL~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~nil---i~~~~~~kl~Dfg~~~~  158 (279)
T cd05111          86 VTQLSPLGSLLDHVRQHRDSLDPQRLLNWCVQIAKGMYYLEEHRMVHRNLAARNIL---LKSDSIVQIADFGVADL  158 (279)
T ss_pred             EEEeCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEE---EcCCCcEEEcCCcccee
Confidence            9999999999999986533  344455566778888877      56899999999   77888899999999874

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.79  E-value=6e-19  Score=129.58  Aligned_cols=134  Identities=14%  Similarity=0.171  Sum_probs=109.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...+|.+.+.||+|+||.||++.. .++..+|+|.....      ....|+.+++.++||||+++++++...+..++++|
T Consensus        64 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~valK~~~~~------~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  137 (357)
T PHA03209         64 ASLGYTVIKTLTPGSEGRVFVATKPGQPDPVVLKIGQKG------TTLIEAMLLQNVNHPSVIRMKDTLVSGAITCMVLP  137 (357)
T ss_pred             hhcCcEEEEEecCCCCeEEEEEEECCCCceEEEEeCCcc------ccHHHHHHHHhCCCCCCcChhheEEeCCeeEEEEE
Confidence            345799999999999999999985 46788999874322      23468999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++.+ +|.+++.....  .....+..+.+++.++.+      +|+|+|+.||+   +.....++++|||.+++
T Consensus       138 ~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nil---l~~~~~~kl~DfG~a~~  206 (357)
T PHA03209        138 HYSS-DLYTYLTKRSRPLPIDQALIIEKQILEGLRYLHAQRIIHRDVKTENIF---INDVDQVCIGDLGAAQF  206 (357)
T ss_pred             ccCC-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEEecCccccc
Confidence            9954 88888876433  344445556778888877      47999999999   78888899999999874

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.79  E-value=8e-19  Score=124.65  Aligned_cols=139  Identities=24%  Similarity=0.354  Sum_probs=112.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..+|.+.+.||+|+||.||++.. .++.    .+++|...... ......+.+|+..++.++|||++++++++.. +..+
T Consensus         6 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~   84 (279)
T cd05057           6 ETELEKIKVLGSGAFGTVYKGVWIPEGEKVKIPVAIKVLREETSPKANKEILDEAYVMASVDHPHVVRLLGICLS-SQVQ   84 (279)
T ss_pred             HHHcEEcceecCCCCccEEEEEEecCCCCcceEEEEEeccCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEec-CceE
Confidence            35788889999999999999984 3333    57888765443 2344678899999999999999999999877 7889


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++|+|.+.+.+...  .....+..+.+++.++.++      |+|+++.|++   +.....++++|||.++.
T Consensus        85 ~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~di~p~nil---~~~~~~~kL~dfg~~~~  158 (279)
T cd05057          85 LITQLMPLGCLLDYVRNHKDNIGSQYLLNWCVQIAKGMSYLEEKRLVHRDLAARNVL---VKTPQHVKITDFGLAKL  158 (279)
T ss_pred             EEEecCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCEEecccCcceEE---EcCCCeEEECCCccccc
Confidence            99999999999999886532  3445555667788888774      6899999999   77778899999998874

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.79  E-value=5.4e-19  Score=127.06  Aligned_cols=144  Identities=22%  Similarity=0.346  Sum_probs=113.3

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC--------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGC   78 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~   78 (167)
                      +.....+|.+.+.||+|+||.||.+...        ++..+++|..... .......+.+|+..++.+ +|||++++++.
T Consensus        10 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~   89 (304)
T cd05101          10 WEFSRDKLTLGKPLGEGCFGQVVMAEALGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGA   89 (304)
T ss_pred             ccccHHHeeecceeeccCCceEEEEEEeccCCCCCCcceeEEeeecccccchHHHHHHHHHHHHHHhhccCCCchheeEE
Confidence            3445678899999999999999998631        2357899887543 234456788999999999 79999999999


Q ss_pred             eecCCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHH
Q 040049           79 CLETEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIW  135 (167)
Q Consensus        79 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~  135 (167)
                      +......++++||+++|+|.+++.....                 ........+.+++.++.+      +|+|+++.|++
T Consensus        90 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil  169 (304)
T cd05101          90 CTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVL  169 (304)
T ss_pred             EecCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEE
Confidence            9999999999999999999999986431                 111223345577777776      47899999999


Q ss_pred             HHhhhccCCccccccchhhh
Q 040049          136 KQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~~  155 (167)
                         +..+..++++|||.++.
T Consensus       170 ---i~~~~~~kl~D~g~~~~  186 (304)
T cd05101         170 ---VTENNVMKIADFGLARD  186 (304)
T ss_pred             ---EcCCCcEEECCCcccee
Confidence               77788899999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=99.79  E-value=7e-19  Score=129.50  Aligned_cols=139  Identities=20%  Similarity=0.217  Sum_probs=111.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------   82 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++.+...      
T Consensus        22 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~~~~~~~~~  101 (364)
T cd07875          22 VLKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEF  101 (364)
T ss_pred             hhcceeEEEEeecCCCeEEEEEEECCCCcEEEEEEeCccccCchhHHHHHHHHHHHHhcCCCCccccceeeccccccccc
Confidence            457899999999999999999984 57889999987643  233445678899999999999999999987543      


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ...|+|+||+++ +|.+.+... ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       102 ~~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kL~DfG~a~~  175 (364)
T cd07875         102 QDVYIVMELMDA-NLCQVIQME-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  175 (364)
T ss_pred             CeEEEEEeCCCC-CHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEE---ECCCCcEEEEeCCCccc
Confidence            347999999976 777777543 2344455567778888777      57899999999   78888999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.79  E-value=7e-19  Score=123.41  Aligned_cols=132  Identities=23%  Similarity=0.304  Sum_probs=108.9

Q ss_pred             ceecccCceeEEEEEeC--CC--cEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA--DE--RIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~--~~--~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|++|.||++.+.  .+  ..+++|.+..... ...+.+.+|+.+++.++|||++++++.+.. ...++++||+++
T Consensus         1 ~~ig~g~~~~v~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-~~~~~v~e~~~~   79 (257)
T cd05040           1 KKLGDGSFGVVRRGEWSTSGGKVIPVAVKCLKSDKLSDIMDDFLKEAAIMHSLDHENLIRLYGVVLT-HPLMMVTELAPL   79 (257)
T ss_pred             CcCCccCcccEEeeeEecCCCCceEEEEeecCCcccHHHHHHHHHHHHHHhhcCCCCccceeEEEcC-CeEEEEEEecCC
Confidence            36899999999999843  23  3689998876544 456678899999999999999999999988 889999999999


Q ss_pred             CCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|.+++.+..   ......+..+.+++.++.+      +|+++++.|++   +..+..++++|||.++.
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~i~H~di~p~nil---~~~~~~~kl~dfg~~~~  146 (257)
T cd05040          80 GSLLDRLRKDALGHFLISTLCDYAVQIANGMRYLESKRFIHRDLAARNIL---LASDDKVKIGDFGLMRA  146 (257)
T ss_pred             CcHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHhCCccccccCcccEE---EecCCEEEecccccccc
Confidence            99999998754   2445556667788888876      57899999999   88888999999998874

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.79  E-value=1.1e-18  Score=122.42  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=112.7

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|+..+.||+|+||.+|.+. ..+++.+++|.+...  .......+.+|+.+++.++|||++++.+++...+..++++||
T Consensus         1 ~y~~~~~lg~g~~g~~~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08218           1 KYVKVKKIGEGSFGKAILVKSKEDGKQYVIKEINISKMSPKEREESRKEVAVLSNMKHPNIVQYQESFEENGNLYIVMDY   80 (256)
T ss_pred             CceEEEEeccCCceEEEEEEEcCCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHhCCCCCeeeeEeeecCCCeEEEEEec
Confidence            58889999999999999998 457889999987543  233445788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+.+.....   +.......+.+++.++.++      |+++++.|++   +..+..++++|||.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil---~~~~~~~~l~d~~~~~  149 (256)
T cd08218          81 CEGGDLYKKINAQRGVLFPEDQILDWFVQICLALKHVHDRKILHRDIKSQNIF---LTKDGTIKLGDFGIAR  149 (256)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---EcCCCCEEEeecccee
Confidence            999999998876432   3334445567777777764      6899999999   7778889999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.79  E-value=6e-19  Score=125.62  Aligned_cols=139  Identities=23%  Similarity=0.192  Sum_probs=114.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|++.+.||+|++|.+|++.. .+++.+++|.+...  .......+.+|+++++.++|+|++++++.+..++..++++|
T Consensus         1 ~~y~~~~~i~~g~~~~v~~~~~~~~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e   80 (288)
T cd07833           1 NKYEVLGVVGEGAYGVVLKCRNKATGEIVAIKKFKESEDDEDVKKTALREVKVLRQLRHENIVNLKEAFRRKGRLYLVFE   80 (288)
T ss_pred             CceeEEEEecccCCeeEEEEEeCCCCcEEEEehhhhhcccccchhHHHHHHHHHHhcCCCCeeehhheEEECCEEEEEEe
Confidence            4688999999999999999985 46889999987543  23345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++++.+..+..... ......+..+.+++.++.+      +|+++++.|++   +..+..++++|||++..
T Consensus        81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~---~~~~~~~kl~d~g~~~~  149 (288)
T cd07833          81 YVERTLLELLEASPGGLPPDAVRSYIWQLLQAIAYCHSHNIIHRDIKPENIL---VSESGVLKLCDFGFARA  149 (288)
T ss_pred             cCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---ECCCCCEEEEeeecccc
Confidence            999876665554432 2445566677888888887      46899999999   78889999999998774

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.79  E-value=8.4e-19  Score=127.34  Aligned_cols=132  Identities=12%  Similarity=0.108  Sum_probs=105.8

Q ss_pred             ccceeccc--CceeEEEEE-eCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           18 VNIVLGQG--GQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        18 ~~~~ig~g--~~g~v~~~~-~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +.+.||+|  +|++||++. ..+++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++..++..++|+||+
T Consensus         2 ~~~~ig~G~~~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~hpniv~~~~~~~~~~~~~lv~e~~   81 (327)
T cd08227           2 LLTVIGRGFEDLMTVNLARYKPTGEYVTVRRINLEACTNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNELWVVTSFM   81 (327)
T ss_pred             hhhhccccccceEEEEEEeecccCcEEEEEEechhhccHHHHHHHHHHHHHHHhcCCCCeeeEEEEEEECCEEEEEEecc
Confidence            45788999  678999998 4578999999886542  233456778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           93 PNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        93 ~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ++|+|.+++....   ......+..+.+++.++.+      +|+|+++.|++   +..+..++++||+.
T Consensus        82 ~~~~l~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil---~~~~~~~~l~~~~~  147 (327)
T cd08227          82 AYGSAKDLICTHFMDGMSELAIAYILQGVLKALDYIHHMGYVHRSVKASHIL---ISVDGKVYLSGLRS  147 (327)
T ss_pred             CCCcHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEE---EecCCcEEEcccch
Confidence            9999999987532   2334445566778888877      57899999999   77777777878764

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.79  E-value=9.1e-19  Score=124.36  Aligned_cols=140  Identities=24%  Similarity=0.355  Sum_probs=111.4

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCc----EEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADER----IVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~----~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..++|...+.||+|+||.||+|. ..++.    .+|+|.+.... ......+.+|+..+..++|||++++++++.. ...
T Consensus         5 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~-~~~   83 (279)
T cd05109           5 KETELKKVKVLGSGAFGTVYKGIWIPDGENVKIPVAIKVLRENTSPKANKEILDEAYVMAGVGSPYVCRLLGICLT-STV   83 (279)
T ss_pred             chhheeeeeecCCCCCceEEEEEEecCCCccceEEEEEEecCCCCHHHHHHHHHHHHHHHhcCCCCCceEEEEEcC-CCc
Confidence            35678899999999999999998 34554    47899876432 3334568889999999999999999998864 457


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++|+|.+.+.....  +.......+.+++.++.+      +|+|++++|++   +.++..++++|||.++.
T Consensus        84 ~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~lH~~~iiH~dlkp~Nil---~~~~~~~kL~dfG~~~~  158 (279)
T cd05109          84 QLVTQLMPYGCLLDYVRENKDRIGSQDLLNWCVQIAKGMSYLEEVRLVHRDLAARNVL---VKSPNHVKITDFGLARL  158 (279)
T ss_pred             EEEEEcCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEE---EcCCCcEEECCCCceee
Confidence            899999999999999986432  444555567788888877      57999999999   77777899999998874

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.79  E-value=1.6e-18  Score=122.25  Aligned_cols=138  Identities=19%  Similarity=0.245  Sum_probs=111.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-----CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-----GKGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVP   85 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-----~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~   85 (167)
                      .+|.+.+.||+|++|.||++.. .++..+++|.+...     .......+.+|+.+++.++|||++++++++.+.  +..
T Consensus         2 ~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~~   81 (264)
T cd06653           2 VNWRLGKLLGRGAFGEVYLCYDADTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNLRHDRIVQYYGCLRDPEEKKL   81 (264)
T ss_pred             CceeeeeeEccCCCeEEEEEEEcCCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHcCCCCcceEEEEEEcCCCCEE
Confidence            4788999999999999999984 57899999976432     123345788899999999999999999998664  457


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++||+++++|.+.+..... ........+.+++.++.+      +|+++++.|++   +..+..++++|||.++
T Consensus        82 ~~v~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~---i~~~~~~~l~dfg~~~  154 (264)
T cd06653          82 SIFVEYMPGGSIKDQLKAYGALTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANIL---RDSAGNVKLGDFGASK  154 (264)
T ss_pred             EEEEEeCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---EcCCCCEEECcccccc
Confidence            899999999999999876542 334444556677777776      57899999999   7778889999999886

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.79  E-value=1.9e-18  Score=121.63  Aligned_cols=138  Identities=24%  Similarity=0.274  Sum_probs=114.8

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|++|.||++.. .++..+++|.+.... ......+.+|+..++.++|+|++++++.+...+..++++|+
T Consensus         1 ~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~iv~e~   80 (267)
T cd06610           1 DDYELIEVIGVGATAVVYAAICLPNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQCNHPNVVKYYTSFVVGDELWLVMPY   80 (267)
T ss_pred             CcceeeeeecCCCCeEEEEEEEcCCCcEEEEEEeccCCcchHHHHHHHHHHHHHhcCCCCEEEEEEEEeeCCEEEEEEec
Confidence            4788999999999999999984 467889999875432 23556788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc----chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE----DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++++|.+.+.....    .....+..+.+++.++.++      |+++++.|++   +.++...+++|||.+.
T Consensus        81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~---~~~~~~~~l~df~~~~  150 (267)
T cd06610          81 LSGGSLLDIMKSSYPRGGLDEAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNIL---LGEDGSVKIADFGVSA  150 (267)
T ss_pred             cCCCcHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEE---EcCCCCEEEcccchHH
Confidence            999999999976422    3445555677778777764      7899999999   7778889999999876

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.79  E-value=7.8e-19  Score=124.11  Aligned_cols=140  Identities=21%  Similarity=0.332  Sum_probs=111.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeC-C---CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|++|.||+|... .   ...+++|...... ....+.+.+|+.+++.++|||++++++++.+ +..+
T Consensus         4 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~-~~~~   82 (270)
T cd05056           4 QREDITLGRCIGEGQFGDVYQGVYMSPENEKIAVAVKTCKNCTSPSVREKFLQEAYIMRQFDHPHIVKLIGVITE-NPVW   82 (270)
T ss_pred             chhhceeeeeeCCccceeEEEEEEecCCCCCcceEEEecCCcCCHHHHHHHHHHHHHHHhCCCCchhceeEEEcC-CCcE
Confidence            3456888899999999999999842 2   2468888765443 3445678999999999999999999998865 5578


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.|++   +.....++++|||.++.
T Consensus        83 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~H~dl~p~nil---i~~~~~~~l~d~g~~~~  156 (270)
T cd05056          83 IVMELAPLGELRSYLQVNKYSLDLASLILYSYQLSTALAYLESKRFVHRDIAARNVL---VSSPDCVKLGDFGLSRY  156 (270)
T ss_pred             EEEEcCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccChheEE---EecCCCeEEccCceeee
Confidence            99999999999999986432  344444556677777766      57899999999   77788899999998874

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.79  E-value=8.7e-19  Score=124.47  Aligned_cols=141  Identities=21%  Similarity=0.316  Sum_probs=113.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeCC-----CcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLAD-----ERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~-----~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~   84 (167)
                      ..++|.+.+.||+|+||.||+|....     +..+++|.+... .......+.+|+.+++.++|||++++++++.. ...
T Consensus         4 ~~~~~~~~~~i~~g~~g~V~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~   83 (280)
T cd05043           4 SRDRVTLSDLLQEGTFGRIFYGILIDEKPGKEEEVFVKTVKDHASEIQVTLLLQESCLLYGLSHQNILPILHVCIEDGEP   83 (280)
T ss_pred             chhheEEeeeecccCCceEEEEEEecCCCCceeEEEEEEccCCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            56789999999999999999998543     677888877543 33445668899999999999999999998765 467


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---------chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---------DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---------~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                      .+++++|+++++|.+++.....         .....+..+.+++.++.++      |+|+++.|++   +.....++++|
T Consensus        84 ~~~~~~~~~~~~L~~~l~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil---~~~~~~~kl~d  160 (280)
T cd05043          84 PFVLYPYMNWGNLKLFLQQCRLGEANNPQALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCV---IDEELQVKITD  160 (280)
T ss_pred             CEEEEEcCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEE---EcCCCcEEECC
Confidence            8899999999999999876421         2333445566778888774      6899999999   77788899999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.++.
T Consensus       161 ~g~~~~  166 (280)
T cd05043         161 NALSRD  166 (280)
T ss_pred             CCCccc
Confidence            999873

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.79  E-value=6.5e-19  Score=128.25  Aligned_cols=143  Identities=21%  Similarity=0.322  Sum_probs=111.6

Q ss_pred             HhhhcCCcccceecccCceeEEEEEe-C-------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeee
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGML-A-------DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCC   79 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~-------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~   79 (167)
                      .....+|.+.+.||+|+||.||.+.. .       .+..+++|.+.... ....+.+.+|+.++.++ +||||+++++++
T Consensus         8 ~~~~~~~~i~~~ig~G~~g~v~~~~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~   87 (334)
T cd05100           8 ELSRTRLTLGKPLGEGCFGQVVMAEAIGIDKDKPNKPVTVAVKMLKDDATDKDLSDLVSEMEMMKMIGKHKNIINLLGAC   87 (334)
T ss_pred             ccCHhHeeecceeccccCCcEEEEEEeccCCccCCcceeEEEEEcccccCHHHHHHHHHHHHHHHhhcCCCCeeeeeEEE
Confidence            34456789999999999999999973 1       12368888776432 33456788999999999 799999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-------------chHhh----HHHHHHHHcCchh------hhhcccchhHHH
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-------------DFVKD----VGFILSRRGGIPR------LKRKKKKNKIWK  136 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-------------~~~~~----~~~~~~i~~~l~~------~h~~~~~~~~~~  136 (167)
                      ...+..++++||+++|+|.+++.....             .....    .....+++.++.+      +|+|+++.|++ 
T Consensus        88 ~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nil-  166 (334)
T cd05100          88 TQDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDTCKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVL-  166 (334)
T ss_pred             ccCCceEEEEecCCCCcHHHHHHhcCCcccccccccccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEE-
Confidence            999999999999999999999986421             11122    2345567777766      57899999999 


Q ss_pred             HhhhccCCccccccchhhh
Q 040049          137 QQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~~  155 (167)
                        +..+..++++|||.++.
T Consensus       167 --l~~~~~~kL~Dfg~~~~  183 (334)
T cd05100         167 --VTEDNVMKIADFGLARD  183 (334)
T ss_pred             --EcCCCcEEECCccccee
Confidence              77788899999998873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.79  E-value=6.4e-19  Score=125.03  Aligned_cols=131  Identities=17%  Similarity=0.198  Sum_probs=100.6

Q ss_pred             eecccCceeEEEEEeC-C------------------------CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeee
Q 040049           21 VLGQGGQGTVHKGMLA-D------------------------ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKL   75 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~-~------------------------~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l   75 (167)
                      .||+|+||.||++... +                        ...+++|.+..........+.+|+.+++.++||||+++
T Consensus         2 ~lG~G~~~~vy~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~~~~l~h~niv~~   81 (274)
T cd05076           2 HLGQGTRTNIYDGRLRVEGGGEPEEDEMEDEDPLVEGNNNGRELRVVLKVLDPSHRDIALAFFETASLMSQVSHIHLAFV   81 (274)
T ss_pred             CcCcccccceecceeEeccCCCCcccccccccccccccCCCeeeeEEEEecChHHHHHHHHHHHHHHHHhcCCCCCeeeE
Confidence            5899999999998631 1                        13467777754444444567888999999999999999


Q ss_pred             eeeeecCCcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-----
Q 040049           76 LGCCLETEVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-----  142 (167)
Q Consensus        76 ~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-----  142 (167)
                      ++++...+..++|+||+++|+|..++.....  +.......+.+++.++.+      +|+|+++.|++   +.+.     
T Consensus        82 ~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiH~dlkp~Nil---l~~~~~~~~  158 (274)
T cd05076          82 HGVCVRGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWKITVAQQLASALSYLEDKNLVHGNVCAKNIL---LARLGLAEG  158 (274)
T ss_pred             EEEEEeCCceEEEEecCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHcCCccCCCCCcccEE---EeccCcccC
Confidence            9999999999999999999999998875432  334444557788888877      57899999998   5432     


Q ss_pred             --CCccccccchhh
Q 040049          143 --LAPKRKKFEEEK  154 (167)
Q Consensus       143 --~~~~l~df~~~~  154 (167)
                        ...+++|||.+.
T Consensus       159 ~~~~~kl~d~g~~~  172 (274)
T cd05076         159 TSPFIKLSDPGVSF  172 (274)
T ss_pred             ccceeeecCCcccc
Confidence              236888999765

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.79  E-value=4.8e-19  Score=125.98  Aligned_cols=137  Identities=23%  Similarity=0.318  Sum_probs=112.0

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|...+.||+|++|.||++.. .+|..+++|.+....  ......+.+|+.+++.++|||++++++++.+.+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~vy~~~~~~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~   80 (284)
T cd07839           1 KYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLYDVLHSDKKLTLVFEY   80 (284)
T ss_pred             CceeEEEecccCCeEEEEEEECCCCcEEEEEEeecccccccCccchhHHHHHHHhcCCCCeeeHHHHhccCCceEEEEec
Confidence            478889999999999999985 578899999875432  22334577899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++ +|.+.+.....  .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil---~~~~~~~~l~dfg~~~~  148 (284)
T cd07839          81 CDQ-DLKKYFDSCNGDIDPEIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLL---INKNGELKLADFGLARA  148 (284)
T ss_pred             CCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE---EcCCCcEEECccchhhc
Confidence            975 88888765332  445556667888888877      46899999999   77888999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.79  E-value=7.9e-19  Score=123.06  Aligned_cols=136  Identities=23%  Similarity=0.394  Sum_probs=110.4

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|+||.||.+.. +++.+++|.....  ...+.+.+|+.+++.++|||++++++++... ..++++||+
T Consensus         5 ~~~~~~~~~lg~g~~g~v~~~~~-~~~~~~iK~~~~~--~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~-~~~~v~e~~   80 (254)
T cd05083           5 LQKLTLGEIIGEGEFGAVLQGEY-TGQKVAVKNIKCD--VTAQAFLEETAVMTKLHHKNLVRLLGVILHN-GLYIVMELM   80 (254)
T ss_pred             HHHceeeeeeccCCCCceEeccc-CCCceEEEeecCc--chHHHHHHHHHHHHhCCCCCcCeEEEEEcCC-CcEEEEECC
Confidence            46789999999999999999874 6778999987543  2346788999999999999999999998654 578999999


Q ss_pred             CCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++|.+++.....   +....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nil---i~~~~~~kl~Dfg~~~~  149 (254)
T cd05083          81 SKGNLVNFLRTRGRALVSVIQLLQFSLDVAEGMEYLESKKLVHRDLAARNIL---VSEDGVAKVSDFGLARV  149 (254)
T ss_pred             CCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccCcceEE---EcCCCcEEECCCcccee
Confidence            99999999986542   333445556677777776      57899999999   77788899999998874

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.79  E-value=1.6e-18  Score=121.69  Aligned_cols=138  Identities=24%  Similarity=0.302  Sum_probs=111.5

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeee-cCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL-ETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~-~~~~~~lv~e   90 (167)
                      .-++|.+.+.||+|++|.||++.. .+..+++|.+...  ...+.+.+|+.+++.++|++++++++++. ..+..++++|
T Consensus         4 ~~~~~~~~~~lg~g~~~~v~~~~~-~~~~~~~k~~~~~--~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (256)
T cd05082           4 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   80 (256)
T ss_pred             cHHhCeeeeeecccCCCeEEEEEE-cCCcEEEEEeCCC--chHHHHHHHHHHHHhCCCCCeeeEEEEEEcCCCceEEEEE
Confidence            345788999999999999999975 4777899987533  33467889999999999999999999764 4567899999


Q ss_pred             cCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++++...   .....+....+++.++++      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil---~~~~~~~kl~dfg~~~~  151 (256)
T cd05082          81 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEANNFVHRDLAARNVL---VSEDNVAKVSDFGLTKE  151 (256)
T ss_pred             CCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccccchheEE---EcCCCcEEecCCcccee
Confidence            9999999999986542   334445556677777776      57899999999   78888999999998773

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.79  E-value=8.4e-19  Score=123.00  Aligned_cols=131  Identities=20%  Similarity=0.239  Sum_probs=101.8

Q ss_pred             ceecccCceeEEEEEeC-CC----------cEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           20 IVLGQGGQGTVHKGMLA-DE----------RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~-~~----------~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +.||+|+||.||++... ++          ..+++|.+...... ...+.+|+.+++.++|||++++++++.. +..+++
T Consensus         1 ~~lg~G~~~~v~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~-~~~~~~e~~~l~~l~h~~i~~~~~~~~~-~~~~lv   78 (259)
T cd05037           1 EHLGQGTFTNIYKGVLRVQSDLDIVGPGQEVSVVLKVLGSDHRD-SLAFFETASLMSQLSHKHLVKLYGVCVR-DENIMV   78 (259)
T ss_pred             CcccccccceEEEEEEeccCCccccCCccceeeeeeccccchhh-HHHHHHHHHHHHcCCCcchhheeeEEec-CCcEEE
Confidence            36899999999999854 33          24667765533332 5778899999999999999999999887 778999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-------Cccccccchh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-------APKRKKFEEE  153 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-------~~~l~df~~~  153 (167)
                      +||+++|+|.+++.....  +.......+.+++.++.+      +|+|+++.|++   +....       .++++|||.+
T Consensus        79 ~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dlkp~Nil---l~~~~~~~~~~~~~kl~Dfg~a  155 (259)
T cd05037          79 EEYVKFGPLDVFLHREKNNVSLHWKLDVAKQLASALHYLEDKKLVHGNVCGKNIL---VARYGLNEGYVPFIKLSDPGIP  155 (259)
T ss_pred             EEcCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhhCCeecccCccceEE---EecCccccCCceeEEeCCCCcc
Confidence            999999999999986552  333334445677777776      57899999999   65555       6899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      ..
T Consensus       156 ~~  157 (259)
T cd05037         156 IT  157 (259)
T ss_pred             cc
Confidence            74

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.79  E-value=1.9e-20  Score=135.06  Aligned_cols=139  Identities=20%  Similarity=0.270  Sum_probs=115.5

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...|...+.||+|+||.||+|. ..+++.+|+|.+.... ..+.+...+|+.++.+++++||.++++.+..+..++++||
T Consensus        12 ~~~~~~~~~IgrGsfG~Vyk~~d~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~~~~it~yygsyl~g~~LwiiMe   91 (467)
T KOG0201|consen   12 ELLYTKLELIGRGSFGEVYKAIDNKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCDSPNITEYYGSYLKGTKLWIIME   91 (467)
T ss_pred             ccccccchhccccccceeeeeeeccccceEEEEEechhhcchhhHHHHHHHHHHHhcCcchHHhhhhheeecccHHHHHH
Confidence            3567778999999999999998 4688999999987653 3456788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||.||++.+.++.... ...........+..++.|      +|+|+|..|++   +...+.++++|||.+-
T Consensus        92 y~~gGsv~~lL~~~~~~~E~~i~~ilre~l~~l~ylH~~~kiHrDIKaanil---~s~~g~vkl~DfgVa~  159 (467)
T KOG0201|consen   92 YCGGGSVLDLLKSGNILDEFEIAVILREVLKGLDYLHSEKKIHRDIKAANIL---LSESGDVKLADFGVAG  159 (467)
T ss_pred             HhcCcchhhhhccCCCCccceeeeehHHHHHHhhhhhhcceeccccccccee---EeccCcEEEEecceee
Confidence            9999999999987654 322333334456666666      67999999999   7778999999999765

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.79  E-value=1.8e-18  Score=120.92  Aligned_cols=133  Identities=25%  Similarity=0.379  Sum_probs=108.4

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLS   98 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~   98 (167)
                      +.||+|++|.||++....++.+++|.+...... ....+.+|+.+++.++||||+++++++...+..++++||+++++|.
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~~~~~l~   80 (251)
T cd05041           1 EKIGKGNFGDVYKGVLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQYDHPNIVKLIGVCVQKQPIYIVMELVPGGSLL   80 (251)
T ss_pred             CccccCCCceEEEEEEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecCCCeEEEEEcCCCCcHH
Confidence            468999999999999655899999987654433 4567889999999999999999999999999999999999999999


Q ss_pred             HHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           99 DYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        99 ~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++.....  ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nil---i~~~~~~~l~d~g~~~~  142 (251)
T cd05041          81 TFLRKKKNRLTVKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCL---VGENNVLKISDFGMSRE  142 (251)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEE---EcCCCcEEEeecccccc
Confidence            99876432  223334445566666665      57999999999   78888899999998874

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.79  E-value=1.6e-18  Score=121.82  Aligned_cols=131  Identities=24%  Similarity=0.374  Sum_probs=104.2

Q ss_pred             eecccCceeEEEEEeC---CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCC
Q 040049           21 VLGQGGQGTVHKGMLA---DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      .||+|+||.||+|...   ++..+++|.+..... ...+.+.+|+.+++.++||||+++++++. .+..++++||+++++
T Consensus         2 ~ig~G~~g~v~~~~~~~~~~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l~h~~ii~~~~~~~-~~~~~lv~e~~~~~~   80 (257)
T cd05115           2 ELGSGNFGCVKKGVYKMRKKQIDVAIKVLKNENEKSVRDEMMREAEIMHQLDNPYIVRMIGVCE-AEALMLVMEMASGGP   80 (257)
T ss_pred             ccCCCCcccEEEEEEecCCCceeEEEEEcccccChHHHHHHHHHHHHHHhcCCCCeEEEEEEEc-CCCeEEEEEeCCCCC
Confidence            3899999999998742   355689998765432 33456889999999999999999999875 457889999999999


Q ss_pred             HHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           97 LSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        97 L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |.+++.....  +....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil---~~~~~~~kl~dfg~~~~  144 (257)
T cd05115          81 LNKFLSGKKDEITVSNVVELMHQVSMGMKYLEGKNFVHRDLAARNVL---LVNQHYAKISDFGLSKA  144 (257)
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCeeecccchheEE---EcCCCcEEeccCCcccc
Confidence            9999875432  444455566777777777      57899999999   78888899999998863

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.79  E-value=1.5e-18  Score=123.91  Aligned_cols=138  Identities=18%  Similarity=0.111  Sum_probs=111.1

Q ss_pred             CCcccceecccCceeEEEEEe----CCCcEEEEEeccCCC----cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcc
Q 040049           15 HLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVVG----KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~   85 (167)
                      +|++.+.||+|+||.||.+..    .+|..+++|.+....    ....+.+.+|+.++..+ +||+|+++++.+......
T Consensus         1 ~y~~~~~lg~G~~g~v~~~~~~~~~~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~   80 (290)
T cd05613           1 NFELLKVLGTGAYGKVFLVRKVSGHDSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTDTKL   80 (290)
T ss_pred             CceeeeeeccCCcceEEEEEeccCCCCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhcccCCChhceeeEeecCCeE
Confidence            478889999999999999984    367889999875432    23345678899999999 589999999999988899


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++++|.+++..... ........+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        81 ~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil---~~~~~~~kl~dfg~~~~  154 (290)
T cd05613          81 HLILDYINGGELFTHLSQRERFKEQEVQIYSGEIVLALEHLHKLGIIYRDIKLENIL---LDSNGHVVLTDFGLSKE  154 (290)
T ss_pred             EEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeE---ECCCCCEEEeeCcccee
Confidence            999999999999999886543 333334445577777776      47899999999   77888999999998763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.78  E-value=9e-19  Score=132.12  Aligned_cols=133  Identities=15%  Similarity=0.143  Sum_probs=108.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ...|.+.+.||+|+||.||++.. .+++.+++|...      ...+.+|+++++.++||||+++++++...+..++++|+
T Consensus       168 ~~gy~i~~~Lg~G~~G~Vy~a~~~~~~~~vavK~~~------~~~~~~E~~iL~~L~HpnIv~l~~~~~~~~~~~lv~e~  241 (461)
T PHA03211        168 GLGFAIHRALTPGSEGCVFESSHPDYPQRVVVKAGW------YASSVHEARLLRRLSHPAVLALLDVRVVGGLTCLVLPK  241 (461)
T ss_pred             cCCeEEEEEEccCCCeEEEEEEECCCCCEEEEeccc------ccCHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            34799999999999999999995 467889998532      12356899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +. ++|.+++.....  .....+..+.+++.++.+      +|+|+|+.||+   +.....++|+|||+++.
T Consensus       242 ~~-~~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDLKP~NIL---l~~~~~vkL~DFGla~~  309 (461)
T PHA03211        242 YR-SDLYTYLGARLRPLGLAQVTAVARQLLSAIDYIHGEGIIHRDIKTENVL---VNGPEDICLGDFGAACF  309 (461)
T ss_pred             cC-CCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEECcCCHHHEE---ECCCCCEEEcccCCcee
Confidence            95 588888875432  344455566777777777      57899999999   77888899999999874

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.78  E-value=8.1e-19  Score=124.03  Aligned_cols=131  Identities=22%  Similarity=0.303  Sum_probs=102.3

Q ss_pred             eecccCceeEEEEEeCCC---cEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCC
Q 040049           21 VLGQGGQGTVHKGMLADE---RIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~~~---~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      .||+|+||.||++...++   ..+++|.+.... ....+.+.+|+..++.++|||++++++.+......++++||+++|+
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~~   81 (268)
T cd05086           2 EIGNGWFGKVLLSEIYTDTGVARVVVKELKANASSKEQNEFLQQGDPYRILQHPNILQCLGQCVEAIPYLLVFEYCELGD   81 (268)
T ss_pred             cCCCCcCceEEEEEEEcCCCcceEEEEEecCCCChHHHHHHHHHHHHHhccCCcchhheEEEecCCCccEEEEecCCCCc
Confidence            589999999999974322   345566554332 3345678999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCc-----chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           97 LSDYLHEQNE-----DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        97 L~~~i~~~~~-----~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |.+++.+...     .....+....+++.++.+      +|+|+++.|++   +.....++++|||.+.
T Consensus        82 L~~~l~~~~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil---~~~~~~~~l~Dfg~~~  147 (268)
T cd05086          82 LKSYLSQEQWHRRNSQLLLLQRMACEIAAGVTHMHKHNFLHSDLALRNCF---LTSDLTVKVGDYGIGP  147 (268)
T ss_pred             HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHCCeeccCCccceEE---EcCCccEEeccccccc
Confidence            9999986432     112233445677777776      57899999999   7778889999999876

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.78  E-value=1.9e-18  Score=122.18  Aligned_cols=136  Identities=24%  Similarity=0.446  Sum_probs=104.5

Q ss_pred             cccceecccCceeEEEEEeC-CCc--EEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------Ccc
Q 040049           17 NVNIVLGQGGQGTVHKGMLA-DER--IVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------EVP   85 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~-~~~--~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~~~   85 (167)
                      .+.+.||+|+||.||++... ++.  .+++|.++..  .....+.+..|+.+++.++|||++++++.+...      ...
T Consensus         2 ~i~~~ig~G~~g~V~~~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~   81 (272)
T cd05075           2 ALGKTLGEGEFGSVMEGQLNQDDSILKVAVKTMKIAICTRSEMEDFLSEAVCMKEFDHPNVMRLIGVCLQTVESEGYPSP   81 (272)
T ss_pred             ccccccCcccCceEEEeEEccCCCeeeEEEEecccCcCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEccCCcccCCCCc
Confidence            46688999999999999853 333  5888876543  234456788999999999999999999987432      246


Q ss_pred             eEEEecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           86 LLVYEYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ++++||+++|+|.+++....       .........+.+++.++.+      +|+|+|++|++   +..+..++++|||.
T Consensus        82 ~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~  158 (272)
T cd05075          82 VVILPFMKHGDLHSFLLYSRLGDCPQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCM---LNENMNVCVADFGL  158 (272)
T ss_pred             EEEEEeCCCCcHHHHHHHhcccCCcccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheE---EcCCCCEEECCCCc
Confidence            89999999999998875322       1233344556677777777      46899999999   77888999999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       159 ~~~  161 (272)
T cd05075         159 SKK  161 (272)
T ss_pred             ccc
Confidence            874

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=99.78  E-value=1.2e-19  Score=124.73  Aligned_cols=139  Identities=19%  Similarity=0.231  Sum_probs=110.2

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc--------ccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK--------GKLDEFINKVVILSQI-NYRNVVKLLGCCLETE   83 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~--------~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~   83 (167)
                      +.|.-.+.+|.|..+.|.+|. ..+|..+++|++.....        ...+...+|+.+++++ .||+|+.+.+.++++.
T Consensus        17 ~~y~pkeilgrgvss~vrRci~k~t~~e~a~kii~~~at~~~~e~~~~~~EaT~~Ev~ILRqv~GHP~II~l~D~yes~s   96 (411)
T KOG0599|consen   17 AKYEPKEILGRGVSSVVRRCIHKETGKEFAVKIIDVTATTESGETPYEMREATRQEISILRQVMGHPYIIDLQDVYESDA   96 (411)
T ss_pred             hhcChHHHhcccchhhhhhhhhcccccceeEEEEEecccccCCccHHHHHHHHHHHHHHHHHhcCCCcEEEeeeeccCcc
Confidence            456777889999999998887 56888999998754321        1234567889999997 6999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcC------chhhhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGG------IPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~------l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+++|+|.++.|.|++++.+.-- ....+...+.++..+      ...+|+|+|++||+   ++.+..++++|||+|..
T Consensus        97 F~FlVFdl~prGELFDyLts~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENIL---lddn~~i~isDFGFa~~  172 (411)
T KOG0599|consen   97 FVFLVFDLMPRGELFDYLTSKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENIL---LDDNMNIKISDFGFACQ  172 (411)
T ss_pred             hhhhhhhhcccchHHHHhhhheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhee---eccccceEEeccceeec
Confidence            99999999999999999987642 333333444455444      45578999999999   89999999999999873

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.78  E-value=2.8e-18  Score=119.88  Aligned_cols=138  Identities=20%  Similarity=0.293  Sum_probs=115.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.+|++.. .+++.+++|.+.....  ...+.+.+|++++..++|||++++.+++...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (254)
T cd06627           1 NYQLGDLIGRGAFGVVYKGLNLETGDFVAIKQISLEKIKEEALKSIMQEIDLLKNLKHPNIVKYIGSIETSDSLYIILEY   80 (254)
T ss_pred             CceeeeEEcccCCeEEEEEEEcCCCcEEEEEEecccccCHHHHHHHHHHHHHHHhCCCCCccEEEEEEEeCCEEEEEEec
Confidence            477889999999999999984 4678899998765543  4556789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++..... .....+....+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~---i~~~~~~~l~d~~~~~~  148 (254)
T cd06627          81 AENGSLRQIIKKFGPFPESLVAVYVYQVLQGLAYLHEQGVIHRDIKAANIL---TTKDGVVKLADFGVATK  148 (254)
T ss_pred             CCCCcHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEE---ECCCCCEEEecccccee
Confidence            999999999886543 445556666777777765      57899999999   77778899999998773

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.78  E-value=1.6e-18  Score=126.01  Aligned_cols=144  Identities=17%  Similarity=0.118  Sum_probs=115.2

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CC
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TE   83 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~   83 (167)
                      ++...+++|.+.+.||+|+||.||++. ..++..+++|.+...  .......+..|+.+++.++|||++++.+++.. .+
T Consensus         4 ~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~   83 (328)
T cd07856           4 TVFEITNRYVDLQPVGMGAFGLVCSARDQLTGQNVAIKKIMKPFSTPVLAKRTYRELKLLKHLRHENIISLSDIFISPLE   83 (328)
T ss_pred             ceeccccceEEEEeecccCCeEEEEEEECCCCCEEEEEEecccccccchhHHHHHHHHHHHhcCCCCeeeEeeeEecCCC
Confidence            445578899999999999999999998 457899999976532  22334667889999999999999999999866 45


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++++||+ +++|.+.++............+.+++.++.+      +|+++++.|++   +.....++++|||.+..
T Consensus        84 ~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nil---i~~~~~~~l~dfg~~~~  157 (328)
T cd07856          84 DIYFVTELL-GTDLHRLLTSRPLEKQFIQYFLYQILRGLKYVHSAGVVHRDLKPSNIL---INENCDLKICDFGLARI  157 (328)
T ss_pred             cEEEEeehh-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEe---ECCCCCEEeCccccccc
Confidence            788999998 5589888876544445555566777777766      57899999999   77888899999998763

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.78  E-value=4.5e-19  Score=129.30  Aligned_cols=141  Identities=27%  Similarity=0.372  Sum_probs=108.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-C-----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecC-
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-A-----DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLET-   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~-----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~-   82 (167)
                      ..++|.+.+.||+|+||.||.+.. .     +++.+++|.+.... ....+.+..|+.++..+ +||||+++++++... 
T Consensus         5 ~~~~~~i~~~lG~G~fg~Vy~a~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l~~h~niv~~~~~~~~~~   84 (337)
T cd05054           5 PRDRLKLGKPLGRGAFGKVIQASAFGIEKSASCRTVAVKMLKEGATASEYKALMTELKILIHIGHHLNVVNLLGACTKPG   84 (337)
T ss_pred             CHHHhhhhcccccCcCceEEeccccccccccccceeeeeeccCCCCHHHHHHHHHHHHHHHhhccCcchhheeeeEecCC
Confidence            346799999999999999999962 2     34789999876432 22345678899999999 799999999988654 


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc--------------------------------------------------------
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE--------------------------------------------------------  106 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~--------------------------------------------------------  106 (167)
                      ..+++++||+++++|.+++.....                                                        
T Consensus        85 ~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (337)
T cd05054          85 GPLMVIVEYCKFGNLSNYLRSKRECFSPYRNKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDE  164 (337)
T ss_pred             CCEEEEEecCCCCCHHHHHHhccccccccccccccccccccccccccccccCCccccccccccccCcchhhcccchhhhH
Confidence            567899999999999999875321                                                        


Q ss_pred             ------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          107 ------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       107 ------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                            ..........+++.++.+      +|+|+|+.|++   +.....++++|||.++.
T Consensus       165 ~~~~~l~~~~~~~~~~qi~~aL~~lH~~~ivHrDikp~Nil---l~~~~~vkL~DfG~a~~  222 (337)
T cd05054         165 LYKEPLTLEDLISYSFQVARGMEFLASRKCIHRDLAARNIL---LSENNVVKICDFGLARD  222 (337)
T ss_pred             HhhcCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEE---EeCCCcEEEeccccchh
Confidence                  111222334567777766      57899999999   77788899999999874

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.78  E-value=2e-18  Score=122.16  Aligned_cols=132  Identities=25%  Similarity=0.398  Sum_probs=104.5

Q ss_pred             ceecccCceeEEEEEeC-CCc--EEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA-DER--IVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~-~~~--~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||++... ++.  .+++|.+... .....+.+.+|+.++..+ +|||++++++++...+..++++||+++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~lv~e~~~~   80 (270)
T cd05047           1 DVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYLAIEYAPH   80 (270)
T ss_pred             CcCCCCCCceEEEEEEcCCCCeeEEEEEEccccCCHHHHHHHHHHHHHHHhhccCCCeeeEEEEEecCCCceEEEEeCCC
Confidence            35899999999999853 443  4677776543 233446788999999999 799999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           95 GNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        95 g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      |+|.+++.....                 .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||
T Consensus        81 ~~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nil---i~~~~~~kl~dfg  157 (270)
T cd05047          81 GNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL---VGENYVAKIADFG  157 (270)
T ss_pred             CcHHHHHHhccccccccccccccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEE---EcCCCeEEECCCC
Confidence            999999975431                 223334456677777776      57899999999   7888899999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      +++
T Consensus       158 l~~  160 (270)
T cd05047         158 LSR  160 (270)
T ss_pred             Ccc
Confidence            875

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.78  E-value=1.4e-18  Score=125.48  Aligned_cols=141  Identities=23%  Similarity=0.345  Sum_probs=110.3

Q ss_pred             hhcCCcccceecccCceeEEEEEeC--------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ..++|.+.+.||+|+||.||++...        ....+++|.+... .......+..|+.+++.+ +||||+++++++..
T Consensus        10 ~~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~   89 (314)
T cd05099          10 PRDRLVLGKPLGEGCFGQVVRAEAYGIDKSRPDQTVTVAVKMLKDNATDKDLADLISEMELMKLIGKHKNIINLLGVCTQ   89 (314)
T ss_pred             cHHHeeeeeeecCCCcccEEEeeecccCCccCCcceEEEEEecCCCCChHHHHHHHHHHHHHHhccCCCCeeeEEEEEcc
Confidence            4467889999999999999998631        2456888887643 233455688899999998 69999999999998


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQ  138 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~  138 (167)
                      .+..++++||+++|+|.+++.....                 ..........+++.++.+      +|+|+++.|++   
T Consensus        90 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nil---  166 (314)
T cd05099          90 EGPLYVIVEYAAKGNLREFLRARRPPGPDYTFDITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVL---  166 (314)
T ss_pred             CCceEEEEecCCCCcHHHHHHhcCCCcccccccccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEE---
Confidence            8999999999999999999976431                 111222345567777766      57899999999   


Q ss_pred             hhccCCccccccchhhh
Q 040049          139 LLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       139 ~~~~~~~~l~df~~~~~  155 (167)
                      +..+..++++|||.++.
T Consensus       167 l~~~~~~kL~Dfg~~~~  183 (314)
T cd05099         167 VTEDNVMKIADFGLARG  183 (314)
T ss_pred             EcCCCcEEEcccccccc
Confidence            77788899999999873

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.78  E-value=2.8e-18  Score=121.97  Aligned_cols=137  Identities=23%  Similarity=0.309  Sum_probs=112.0

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +|+..+.||+|++|.||++.. .++..+++|.+.... ......+.+|+.+++.++|||++++++++...+..++++||+
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~   80 (284)
T cd07836           1 NFKQLEKLGEGTYATVYKGRNRTTGEIVALKEIHLDAEEGTPSTAIREISLMKELKHENIVRLHDVIHTENKLMLVFEYM   80 (284)
T ss_pred             CceEeeeeccCCceEEEEEEECCCCeEEEEEEecccccccchHHHHHHHHHHHhhcCCCEeeeeeeEeeCCcEEEEEecC
Confidence            588899999999999999995 478899999876543 233456778999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++ +|.+++....    .........+.+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        81 ~~-~l~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~---~~~~~~~~l~d~g~~~~  149 (284)
T cd07836          81 DK-DLKKYMDTHGVRGALDPNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLL---INKRGELKLADFGLARA  149 (284)
T ss_pred             Cc-cHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEE---ECCCCcEEEeecchhhh
Confidence            86 8888887543    1334445556777777776      57899999999   77888899999998863

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.78  E-value=3e-18  Score=122.12  Aligned_cols=140  Identities=21%  Similarity=0.253  Sum_probs=118.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++.|.....+|+|++|.||++... ++..+++|.+..... ..+.+..|+..++.++|+|++++++.+...+..++++
T Consensus        16 ~~~~~~~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~-~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~   94 (286)
T cd06614          16 DPRELYKNLEKIGEGASGEVYKATDRATGKEVAIKKMRLRKQ-NKELIINEILIMKDCKHPNIVDYYDSYLVGDELWVVM   94 (286)
T ss_pred             CccccchHhHhccCCCCeEEEEEEEccCCcEEEEEEEecCch-hHHHHHHHHHHHHHCCCCCeeEEEEEEEECCEEEEEE
Confidence            45677888999999999999999854 688899998765433 4567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++++|.+++....  ......+..+.+++.++.++      |+++++.|++   +.++..++++|||.+.
T Consensus        95 e~~~~~~L~~~l~~~~~~l~~~~~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~---i~~~~~~~l~d~~~~~  164 (286)
T cd06614          95 EYMDGGSLTDIITQNFVRMNEPQIAYVCREVLQGLEYLHSQNVIHRDIKSDNIL---LSKDGSVKLADFGFAA  164 (286)
T ss_pred             eccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCChhhEE---EcCCCCEEECccchhh
Confidence            9999999999999864  35555666778888888775      6899999999   7888889999999765

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.78  E-value=2.6e-18  Score=122.53  Aligned_cols=137  Identities=22%  Similarity=0.261  Sum_probs=114.6

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      +|.....||+|++|.||++.. .+++.+++|.+........+.+.+|+.+++.++|||++++++++...+..++++||++
T Consensus        20 ~~~~~~~lg~g~~g~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~e~~~l~~~~h~~vv~~~~~~~~~~~~~~v~e~~~   99 (285)
T cd06648          20 YLDNFVKIGEGSTGIVCIATDKSTGRQVAVKKMDLRKQQRRELLFNEVVIMRDYQHPNIVEMYSSYLVGDELWVVMEFLE   99 (285)
T ss_pred             hhhcceEeccCCCeEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHHcCCCChheEEEEEEcCCeEEEEEeccC
Confidence            566667999999999999984 5788999998765544455668899999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           94 NGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        94 ~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++|.+++..........+..+.+++.++.+      +|+++++.|++   +..+..++++|||.+.
T Consensus       100 ~~~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~~l~d~g~~~  163 (285)
T cd06648         100 GGALTDIVTHTRMNEEQIATVCLAVLKALSFLHAQGVIHRDIKSDSIL---LTSDGRVKLSDFGFCA  163 (285)
T ss_pred             CCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChhhEE---EcCCCcEEEcccccch
Confidence            9999999887444445556667777777776      57899999999   7888899999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.78  E-value=2.3e-18  Score=122.40  Aligned_cols=138  Identities=17%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-ccHHHHHHHHHH-HhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GKLDEFINKVVI-LSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~~~~~~~e~~~-~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|+||.||++.. .+|..+|+|.+..... .....+..|... ++..+|||++++++++..++..++++|
T Consensus         1 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~iv~~~~~~~~~~~~~lv~e   80 (283)
T cd06617           1 DDLEVIEELGRGAYGVVDKMRHVPTGTIMAVKRIRATVNSQEQKRLLMDLDISMRSVDCPYTVTFYGALFREGDVWICME   80 (283)
T ss_pred             CCceEEEEecccCCeEEEEEEEcCCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHHcCCCCeeeeeEEEecCCcEEEEhh
Confidence            4788999999999999999985 5789999998765422 222345556654 556789999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++ |+|.+++....     .+....+..+.+++.++.+       +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil---~~~~~~~kl~dfg~~~~  153 (283)
T cd06617          81 VMD-TSLDKFYKKVYDKGLTIPEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVL---INRNGQVKLCDFGISGY  153 (283)
T ss_pred             hhc-ccHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEE---ECCCCCEEEeecccccc
Confidence            997 48888876532     1334455667777777766       46789999999   78888999999999874

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.78  E-value=1.6e-18  Score=124.11  Aligned_cols=135  Identities=23%  Similarity=0.300  Sum_probs=112.4

Q ss_pred             cccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           17 NVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      .....||+|++|.||++.. .+++.+++|.+..........+.+|+..++.++|||++++++.+...+..++++||++++
T Consensus        23 ~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~~~  102 (292)
T cd06657          23 DNFIKIGEGSTGIVCIATVKSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFLEGG  102 (292)
T ss_pred             hhHHHcCCCCCeEEEEEEEcCCCeEEEEEEecccchhHHHHHHHHHHHHHhcCCcchhheeeEEEeCCEEEEEEecCCCC
Confidence            3346799999999999984 578999999876554445567889999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           96 NLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        96 ~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.+++.............+.+++.++.++      |+|+++.|++   +.++..++++|||.+.
T Consensus       103 ~L~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~givH~dl~p~Nil---v~~~~~~~l~dfg~~~  164 (292)
T cd06657         103 ALTDIVTHTRMNEEQIAAVCLAVLKALSVLHAQGVIHRDIKSDSIL---LTHDGRVKLSDFGFCA  164 (292)
T ss_pred             cHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEEcccccce
Confidence            999887654445555566677788777774      7899999999   7788889999999876

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.78  E-value=4.8e-18  Score=118.33  Aligned_cols=138  Identities=25%  Similarity=0.280  Sum_probs=116.2

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      +|...+.||+|++|.+|++.. .++..+++|............+.+|+..++.++||+++++.+.+...+..++++||++
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~l~~e~~~   80 (253)
T cd05122           1 LFEILEKIGKGGFGEVYKARHKRTGKEVAIKVIKLESKEKKEKIINEIQILKKCKHPNIVKYYGSYLKKDELWIVMEFCS   80 (253)
T ss_pred             CceeeeeeccCCceEEEEEEECCCCcEEEEEEecccchhHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEEecCC
Confidence            478889999999999999985 4688999998876544456788999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhc--CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           94 NGNLSDYLHEQ--NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~--~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|.+++...  .......+..+.+++.++.+      +|+|+++.|++   +..+..++|+|||.+..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~---i~~~~~~~l~d~~~~~~  147 (253)
T cd05122          81 GGSLKDLLKSTNQTLTESQIAYVCKELLKGLEYLHSNGIIHRDIKAANIL---LTSDGEVKLIDFGLSAQ  147 (253)
T ss_pred             CCcHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhhcCCEecCCCCHHHEE---EccCCeEEEeecccccc
Confidence            99999998875  22444555566777777766      57899999999   77788899999998874

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.78  E-value=2.5e-18  Score=121.19  Aligned_cols=132  Identities=17%  Similarity=0.209  Sum_probs=102.7

Q ss_pred             ceecccCceeEEEEEeCC-------------CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           20 IVLGQGGQGTVHKGMLAD-------------ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~-------------~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      +.||+|+||.||++....             ...+++|.+..........+..|+..+..++||||+++++++.++...+
T Consensus         1 ~~lg~G~~~~vy~~~~~~~~~~~~~~~~~~~~~~v~~k~~~~~~~~~~~~~~~~~~~l~~l~hp~iv~~~~~~~~~~~~~   80 (262)
T cd05077           1 EHLGRGTRTQIYAGILNYKDDDEDDGYSYEKEIKVILKVLDPSHRDISLAFFETASMMRQVSHKHIVLLYGVCVRDVENI   80 (262)
T ss_pred             CccccCCcceEeeeecccCCCccccccchhhceeEEEeecChhhhhHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCE
Confidence            368999999999997421             2357888766554455567788899999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-------Cccccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-------APKRKKFE  151 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-------~~~l~df~  151 (167)
                      +++||+++|+|..++.....  .....+....+++.++.+      +|+|+++.|++   +....       .++++|||
T Consensus        81 lv~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil---l~~~~~~~~~~~~~~l~d~g  157 (262)
T cd05077          81 MVEEFVEFGPLDLFMHRKSDVLTTPWKFKVAKQLASALSYLEDKDLVHGNVCTKNIL---LAREGIDGECGPFIKLSDPG  157 (262)
T ss_pred             EEEecccCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhhhCCeECCCCCcccEE---EecCCccCCCCceeEeCCCC
Confidence            99999999999888875432  334445567788888877      56899999999   54332       26888999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      .+.
T Consensus       158 ~~~  160 (262)
T cd05077         158 IPI  160 (262)
T ss_pred             CCc
Confidence            876

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.78  E-value=1.5e-18  Score=122.19  Aligned_cols=139  Identities=21%  Similarity=0.207  Sum_probs=113.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|+..+.||+|++|.||++.. .+++.+++|.+.... ......+.+|+..++.++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~~ig~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (265)
T cd06605           1 DDLEYLGELGAGNSGVVSKVLHRPTGKIMAVKTIRLEINEAIQKQILRELDILHKCNSPYIVGFYGAFYNNGDISICMEY   80 (265)
T ss_pred             CcchHHHHhcCCCCeEEEEEEEcCCCcEEEEEEEecccChHHHHHHHHHHHHHHHCCCCchhhhheeeecCCEEEEEEEe
Confidence            4678889999999999999985 468899999876543 33446688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++....  .+....+..+.+++.++.+       +|+++++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~---~~~~~~~~l~d~g~~~~  150 (265)
T cd06605          81 MDGGSLDKILKEVQGRIPERILGKIAVAVLKGLTYLHEKHKIIHRDVKPSNIL---VNSRGQIKLCDFGVSGQ  150 (265)
T ss_pred             cCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHcCCCCeecCCCCHHHEE---ECCCCCEEEeecccchh
Confidence            99999999998652  2344445556666666655       56789999999   77788899999998763

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.78  E-value=2.8e-18  Score=125.43  Aligned_cols=142  Identities=16%  Similarity=0.117  Sum_probs=113.3

Q ss_pred             HhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC---
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETE---   83 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~---   83 (167)
                      -...++|.+.+.||+|++|.||++. ..++..+|+|.+....  ......+.+|+.+++.++||||+++.+++...+   
T Consensus        11 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   90 (343)
T cd07880          11 WEVPDRYRDLKQVGSGAYGTVCSALDRRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMKHENVIGLLDVFTPDLSLD   90 (343)
T ss_pred             hccccceEEEEEeeecCCeEEEEEEECCCCcEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCccceeeeecCCcccc
Confidence            3356789999999999999999998 4578999999875322  223356789999999999999999999987654   


Q ss_pred             ---cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           84 ---VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        84 ---~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                         ..+++++|+ +++|.+++.....+.......+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        91 ~~~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nil---l~~~~~~kl~dfg~~~  166 (343)
T cd07880          91 RFHDFYLVMPFM-GTDLGKLMKHEKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLA---VNEDCELKILDFGLAR  166 (343)
T ss_pred             ccceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEeeccccc
Confidence               348999998 6799888876544555555667788888776      57899999999   7778889999999887


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       167 ~  167 (343)
T cd07880         167 Q  167 (343)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.77  E-value=2.3e-18  Score=126.00  Aligned_cols=149  Identities=17%  Similarity=0.104  Sum_probs=118.1

Q ss_pred             cccHHHHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeee
Q 040049            3 IFSAKELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCC   79 (167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~   79 (167)
                      .....++....++|.+.+.||+|+||.||++. ..+++.+|+|.+....  ....+.+.+|+.++..++||||+++.+++
T Consensus         6 ~~~~~~~~~~~~~y~~~~~lg~G~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~iv~~~~~~   85 (345)
T cd07877           6 QELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVF   85 (345)
T ss_pred             hhHHHHHhhccCceEEEEEeeecCCeEEEEEEEcCCCeEEEEEEecCcchhhHHHHHHHHHHHHHHHcCCCcccceeeee
Confidence            34456677788999999999999999999998 4578899999876432  22345677899999999999999999988


Q ss_pred             ecC------CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccc
Q 040049           80 LET------EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        80 ~~~------~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                      ...      ...+++++++ +++|.+++..........+..+.+++.++.+      +|+++++.|++   +.++..+++
T Consensus        86 ~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl---l~~~~~~kl  161 (345)
T cd07877          86 TPARSLEEFNDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA---VNEDCELKI  161 (345)
T ss_pred             eecccccccccEEEEehhc-ccCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEE---EcCCCCEEE
Confidence            543      3367788776 7799888876554555666667788888877      46899999999   788889999


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.++.
T Consensus       162 ~dfg~~~~  169 (345)
T cd07877         162 LDFGLARH  169 (345)
T ss_pred             eccccccc
Confidence            99998874

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.77  E-value=3.2e-18  Score=120.24  Aligned_cols=131  Identities=26%  Similarity=0.361  Sum_probs=104.8

Q ss_pred             eecccCceeEEEEEe---CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           21 VLGQGGQGTVHKGML---ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~---~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      .||+|+||.||+|.+   .++..+++|.+....  ....+.+.+|+.+++.++||||+++++++. .+..++++||++++
T Consensus         2 ~lg~G~~g~v~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~-~~~~~lv~e~~~~~   80 (257)
T cd05116           2 ELGSGNFGTVKKGMYKMKKSEKTVAVKILKNDNNDPALKDELLREANVMQQLDNPYIVRMIGICE-AESWMLVMELAELG   80 (257)
T ss_pred             cCCCcCCcceEEeEEecCCCceEEEEEEccCCCCcHHHHHHHHHHHHHHHhCCCCCcceEEEEEc-CCCcEEEEecCCCC
Confidence            589999999999863   357889999875432  234567889999999999999999999875 45678999999999


Q ss_pred             CHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           96 NLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        96 ~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|.+++..... .....+..+.+++.++.+      +|+|+++.|++   +.++..++++|||.++.
T Consensus        81 ~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~nil---l~~~~~~kl~Dfg~~~~  144 (257)
T cd05116          81 PLNKFLQKNKHVTEKNITELVHQVSMGMKYLEETNFVHRDLAARNVL---LVTQHYAKISDFGLSKA  144 (257)
T ss_pred             cHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccchhhEE---EcCCCeEEECCCccccc
Confidence            99999876542 444455556778877776      57899999999   77888899999998873

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.77  E-value=3.2e-18  Score=119.88  Aligned_cols=138  Identities=25%  Similarity=0.337  Sum_probs=111.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|+..+.||+|++|.+|++.. .+++.+++|.+...  .......+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~lv~e~   80 (256)
T cd08220           1 KYEKIRVVGRGAFGIVHLCRRKADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLLSHPNIIEYYENFLEDKALMIVMEY   80 (256)
T ss_pred             CceEEEEecccCceEEEEEEEcCCCcEEEEEEEeccccccHHHHHHHHHHHHHhhCCCCchhheeeeEecCCEEEEEEec
Confidence            588889999999999999984 57889999987543  233456788999999999999999999999988999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +..+ ..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil---~~~~~~~~~l~d~~~~~~  151 (256)
T cd08220          81 APGGTLAEYIQKRCNSLLDEDTILHFFVQILLALHHVHTKLILHRDLKTQNIL---LDKHKMVVKIGDFGISKI  151 (256)
T ss_pred             CCCCCHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEEccCCCcee
Confidence            999999999986532   333444556677777766      57899999998   5533 4568999998873

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=99.77  E-value=3.2e-18  Score=122.00  Aligned_cols=137  Identities=22%  Similarity=0.282  Sum_probs=105.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhc---CCCCceeeeeeeeecC-----C
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQ---INYRNVVKLLGCCLET-----E   83 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~---l~h~~i~~l~~~~~~~-----~   83 (167)
                      +|.+.+.||+|+||.||++.. .+++.+|+|.+....  ........+|+..++.   ++||||+++++++...     .
T Consensus         1 ~y~~~~~lg~g~~g~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~   80 (288)
T cd07863           1 QYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRET   80 (288)
T ss_pred             CceEeeEEeecCCeEEEEEEECCCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCc
Confidence            488889999999999999984 578999999876432  2223345566666655   4799999999988642     3


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ..++++|++++ +|.+++.....   ........+.+++.++.+      +|+|+++.|++   +.++..++++|||.++
T Consensus        81 ~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nil---i~~~~~~kl~dfg~~~  156 (288)
T cd07863          81 KVTLVFEHVDQ-DLRTYLDKVPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENIL---VTSGGQVKLADFGLAR  156 (288)
T ss_pred             eEEEEEccccc-CHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCCEEECccCccc
Confidence            47899999975 89888876432   344455567788888877      47899999999   7888899999999887


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       157 ~  157 (288)
T cd07863         157 I  157 (288)
T ss_pred             c
Confidence            4

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.77  E-value=2e-18  Score=128.29  Aligned_cols=134  Identities=16%  Similarity=0.126  Sum_probs=108.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC---CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA---DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..+|.+.+.||+|+||.||++...   .+..+++|.+...     ....+|+.+++.++||||+++++.+...+..++++
T Consensus        91 ~~~y~i~~~Lg~G~~g~Vy~~~~~~~~~~~~v~vK~~~~~-----~~~~~E~~il~~l~h~~iv~~~~~~~~~~~~~lv~  165 (392)
T PHA03207         91 RMQYNILSSLTPGSEGEVFVCTKHGDEQRKKVIVKAVTGG-----KTPGREIDILKTISHRAIINLIHAYRWKSTVCMVM  165 (392)
T ss_pred             cCceEEEEeecCCCCeEEEEEEEcCCccceeEEEEecccc-----ccHHHHHHHHHhcCCCCccceeeeEeeCCEEEEEe
Confidence            356999999999999999999732   4577888876532     23457999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++. ++|.+++..... .....+..+.+++.++.+      +|+|+|+.|++   +.....++++|||++..
T Consensus       166 e~~~-~~l~~~l~~~~~l~~~~~~~i~~ql~~aL~~LH~~givHrDlkp~Nil---l~~~~~~~l~DfG~a~~  234 (392)
T PHA03207        166 PKYK-CDLFTYVDRSGPLPLEQAITIQRRLLEALAYLHGRGIIHRDVKTENIF---LDEPENAVLGDFGAACK  234 (392)
T ss_pred             hhcC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---EcCCCCEEEccCccccc
Confidence            9996 588888854432 444555667778877776      57999999999   78888999999999863

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.77  E-value=4.7e-18  Score=121.23  Aligned_cols=139  Identities=19%  Similarity=0.162  Sum_probs=110.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~lv~   89 (167)
                      ++|...+.||+|++|.||.+.. .+++.+++|.+..... .....+.+|++.++.++||||+++++++...  +.+++++
T Consensus         1 ~~~~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~lv~   80 (287)
T cd06621           1 EKIVELSRLGEGAGGSVTKCRLKNTGMIFALKTITTDPNPDLQKQILRELEINKSCKSPYIVKYYGAFLDESSSSIGIAM   80 (287)
T ss_pred             CceEEEEEeccCCceEEEEEEECCCCeEEEEEEEecCCchHHHHHHHHHHHHHHhCCCCCeeeeeeEEEccCCCeEEEEE
Confidence            3678889999999999999995 5688899998764322 3446688999999999999999999988653  4689999


Q ss_pred             ecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++....     .........+.+++.++.+      +|+++++.|++   +.....++++|||.+..
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil---~~~~~~~~l~dfg~~~~  154 (287)
T cd06621          81 EYCEGGSLDSIYKKVKKRGGRIGEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNIL---LTRKGQVKLCDFGVSGE  154 (287)
T ss_pred             EecCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---EecCCeEEEeecccccc
Confidence            9999999988776421     1333445566777777766      57899999999   77778899999998763

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.77  E-value=3.8e-18  Score=119.87  Aligned_cols=138  Identities=20%  Similarity=0.227  Sum_probs=109.7

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~lv~   89 (167)
                      +|.+.+.+|+|++|.||++. ..++..+++|.+...  .....+.+..|+..++.++|||++++++.+..  ....++++
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (265)
T cd08217           1 DYEVLETIGKGSFGTVRKVRRKSDGKILVWKEIDYGNMTEKEKQQLVSEVNILRELKHPNIVRYYDRIIDRSNQTLYIVM   80 (265)
T ss_pred             CceeeeeeccCCCeEEEEeeecCCCCEEEEEEEecccCCHHHHHHHHHHHHHHHhcCCCccceeeeeeecCCCCEEEEEe
Confidence            47888999999999999998 457888999977543  33345668889999999999999999998764  35578999


Q ss_pred             ecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchhh-----------hhcccchhHHHHhhhccCCccccccchh
Q 040049           90 EYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPRL-----------KRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~~-----------h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ||+++++|.+++....     ......+..+.+++.++.++           |+|+++.|++   +..+..++++|||.+
T Consensus        81 e~~~~~~L~~~l~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nil---i~~~~~~kl~d~g~~  157 (265)
T cd08217          81 EYCEGGDLAQLIQKCKKERKYIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIF---LDANNNVKLGDFGLA  157 (265)
T ss_pred             hhccCCCHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEE---EecCCCEEEeccccc
Confidence            9999999999987641     13344555666777666654           5799999999   778889999999987


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      ..
T Consensus       158 ~~  159 (265)
T cd08217         158 KI  159 (265)
T ss_pred             cc
Confidence            74

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.77  E-value=3.2e-18  Score=119.99  Aligned_cols=137  Identities=18%  Similarity=0.189  Sum_probs=110.0

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~~~lv~e   90 (167)
                      +|.+.+.+|+|++|.||.+.. .+++.+++|.+....  ....+.+.+|+.+++.++|||++++.+.+.. ....++++|
T Consensus         1 ~y~~~~~lg~g~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~lv~e   80 (257)
T cd08223           1 AYCFVRVVGKGSYGEVSLVRHRTDGKQYVIKKLNLRNASRRERKAAEQEAQLLSQLKHPNIVAYRESWEGEDGLLYIVMG   80 (257)
T ss_pred             CceEEEEecCCCCeEEEEEEEcCCCcEEEEEEEehhhcCHHHHHHHHHHHHHHHhCCCCCeeeeeeeecCCCCEEEEEec
Confidence            488899999999999999984 467889999875432  2344568889999999999999999988764 446789999


Q ss_pred             cCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++....   .+....+..+.+++.++.+      +|+|+++.||+   +.....++++|||.++
T Consensus        81 ~~~~~~l~~~l~~~~~~~l~~~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil---~~~~~~~~l~df~~~~  150 (257)
T cd08223          81 FCEGGDLYHKLKEQKGKLLPENQVVEWFVQIAMALQYLHEKHILHRDLKTQNVF---LTRTNIIKVGDLGIAR  150 (257)
T ss_pred             ccCCCcHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCchhEE---EecCCcEEEecccceE
Confidence            999999999998642   2344455566677777665      57899999999   7778889999999876

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.77  E-value=2.7e-18  Score=123.39  Aligned_cols=139  Identities=25%  Similarity=0.382  Sum_probs=109.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|...+.||+|+||.||++.. .++.    .+++|.+..... .....+.+|+.+++.++|||++++++++... ..+
T Consensus         6 ~~~~~~~~~lg~G~~g~vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~-~~~   84 (303)
T cd05110           6 ETELKRVKVLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSP-TIQ   84 (303)
T ss_pred             hhhceeccccccCCCccEEEEEEecCCCcceeeEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcCC-Cce
Confidence            45778889999999999999984 4454    468887654322 2234678899999999999999999998654 467


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++|+|.+.+.....  .....+....+++.++.+      +|+|+++.|++   +.....++++|||.++.
T Consensus        85 ~v~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~dikp~Nil---l~~~~~~kL~Dfg~~~~  158 (303)
T cd05110          85 LVTQLMPHGCLLDYVHEHKDNIGSQLLLNWCVQIAKGMMYLEERRLVHRDLAARNVL---VKSPNHVKITDFGLARL  158 (303)
T ss_pred             eeehhcCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHhhcCeeccccccceee---ecCCCceEEcccccccc
Confidence            89999999999999886532  344555667788877777      57899999999   67778899999999874

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.77  E-value=3.7e-18  Score=121.36  Aligned_cols=147  Identities=18%  Similarity=0.241  Sum_probs=116.4

Q ss_pred             cHHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec-
Q 040049            5 SAKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE-   81 (167)
Q Consensus         5 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~-   81 (167)
                      ++.++....+.|++.+.+|+|+||.||++.. .+++.+++|...... .....+..|+.++..+ +|||++++++++.. 
T Consensus         7 ~~~~~~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~a~K~~~~~~-~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~   85 (282)
T cd06636           7 DLSALRDPAGIFELVEVVGNGTYGQVYKGRHVKTGQLAAIKVMDVTE-DEEEEIKLEINMLKKYSHHRNIATYYGAFIKK   85 (282)
T ss_pred             hhhhhcChhhhhhhheeeccCCCeEEEEEEEcCCCcEEEEEEEecCh-HHHHHHHHHHHHHHHhcCCCcEEEEeeehhcc
Confidence            4556666778999999999999999999984 578899999875432 3345677888888888 69999999999853 


Q ss_pred             -----CCcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccc
Q 040049           82 -----TEVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        82 -----~~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                           .+..++++||+++|+|.+++.....   .....+..+.+++.++.+      +|+++++.|++   +.....+++
T Consensus        86 ~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nil---i~~~~~~~l  162 (282)
T cd06636          86 SPPGHDDQLWLVMEFCGAGSVTDLVKNTKGNALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVL---LTENAEVKL  162 (282)
T ss_pred             cccCCCCEEEEEEEeCCCCcHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEE
Confidence                 3567999999999999999876432   233344456678888877      46899999999   777888999


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.+..
T Consensus       163 ~dfg~~~~  170 (282)
T cd06636         163 VDFGVSAQ  170 (282)
T ss_pred             eeCcchhh
Confidence            99998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.77  E-value=1.3e-18  Score=123.34  Aligned_cols=139  Identities=22%  Similarity=0.243  Sum_probs=116.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ++|.+.+.||+|++|.||++.. .+++.+++|.+...   .......+..|..+++.+. |||++++++++...+..+++
T Consensus         1 ~~y~~~~~lg~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   80 (280)
T cd05581           1 DDFKFGKIIGEGSFSTVVLAKEKETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLNGHPGIIKLYYTFQDEENLYFV   80 (280)
T ss_pred             CCceEeeeecCCCceEEEEEEEcCCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcccCCCchhHHHHhcCCceEEEE
Confidence            4788999999999999999984 57899999987542   2233456788899999998 99999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|++++++|.+.+.+... .....+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~e~~~~~~L~~~l~~~~~l~~~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~---i~~~~~~~l~df~~~~~  151 (280)
T cd05581          81 LEYAPNGELLQYIRKYGSLDEKCTRFYAAEILLALEYLHSKGIIHRDLKPENIL---LDKDMHIKITDFGTAKV  151 (280)
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeE---ECCCCCEEecCCccccc
Confidence            999999999999987643 5556666677888887774      6899999999   77788899999998774

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.77  E-value=2.2e-18  Score=125.55  Aligned_cols=140  Identities=17%  Similarity=0.164  Sum_probs=113.2

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----Cc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----EV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~~   84 (167)
                      ..++|.+.+.||+|++|.||++. ..+++.+++|.+... .......+.+|+.+++.++|||++++++++...     ..
T Consensus         3 ~~~~y~i~~~lg~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~   82 (336)
T cd07849           3 VGPRYQNLSYIGEGAYGMVCSATHKPTGVKVAIKKISPFEHQTFCQRTLREIKILRRFKHENIIGILDIIRPPSFESFND   82 (336)
T ss_pred             cccceEEEEEEEecCCeEEEEEEEcCCCCeEEEEEecccccchhHHHHHHHHHHHHhCCCCCcCchhheeecccccccce
Confidence            35789999999999999999998 457899999987543 233445678899999999999999999887544     34


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++ +|.+.+..........+..+.+++.++.+      +|+|+++.|++   +.+...++++|||.++.
T Consensus        83 ~~lv~e~~~~-~l~~~~~~~~l~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nil---l~~~~~~kl~dfg~~~~  155 (336)
T cd07849          83 VYIVQELMET-DLYKLIKTQHLSNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLL---LNTNCDLKICDFGLARI  155 (336)
T ss_pred             EEEEehhccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEE---ECCCCCEEECcccceee
Confidence            7899999975 88888876554555666667788888776      57899999999   78888999999998864

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.77  E-value=3.8e-18  Score=123.02  Aligned_cols=137  Identities=20%  Similarity=0.246  Sum_probs=110.2

Q ss_pred             CCcccceecccCceeEEEEEe-C--CCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-A--DERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~--~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~   86 (167)
                      .|.+.+.||+|++|.||++.. .  ++..+|+|.+....   ....+...+|+.++..++|||++++++++...  +..+
T Consensus         1 ~y~~~~~ig~g~~g~v~~~~~~~~~~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   80 (316)
T cd07842           1 KYEIEGCIGRGTYGRVYKAKRKNGKDGKEYAIKKFKGDKEQYTGISQSACREIALLRELKHENVVSLVEVFLEHADKSVY   80 (316)
T ss_pred             CceEEEEeccCCcEEEEEEEecCCCCCCeEEEEEeccccccccCccHHHHHHHHHHHhcCCCCccceEEEEeCCCCceEE
Confidence            477889999999999999995 3  57899999877532   34456778899999999999999999999888  7799


Q ss_pred             EEEecCCCCCHHHHHhhcCc------chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc----cCCcccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQNE------DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK----GLAPKRKKF  150 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~------~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~----~~~~~l~df  150 (167)
                      +|+||+++ ++.+.+.....      .....+..+.+++.++.++      |+|+++.|++   +.+    ...++++||
T Consensus        81 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil---~~~~~~~~~~~kl~Df  156 (316)
T cd07842          81 LLFDYAEH-DLWQIIKFHRQAKRVSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANIL---VMGEGPERGVVKIGDL  156 (316)
T ss_pred             EEEeCCCc-CHHHHHHhhccCCCcCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEE---EcCCCCccceEEECCC
Confidence            99999976 77777654321      2334555677888888774      7899999999   777    788999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       157 g~~~~  161 (316)
T cd07842         157 GLARL  161 (316)
T ss_pred             ccccc
Confidence            98774

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.77  E-value=4.8e-18  Score=120.60  Aligned_cols=131  Identities=19%  Similarity=0.172  Sum_probs=105.8

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|+||.||++.. .+++.+++|.+....   ......+..|+.+++.++|||++++++.+...+..++++||+++++|
T Consensus         1 lg~g~~g~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (277)
T cd05577           1 LGKGGFGEVCACQVKATGKMYACKKLDKKRLKKRKGEQMALNEKKILEKVSSRFIVSLAYAFETKDDLCLVMTLMNGGDL   80 (277)
T ss_pred             CCCCCceeEEEEEEcCCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHhCCCCCEeeeeeEEecCCeEEEEEecCCCCcH
Confidence            68999999999984 578899999875432   22344567899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+.+.....   ........+.+++.++.+      +|+|+++.||+   +.++..++++|||.+..
T Consensus        81 ~~~l~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil---~~~~~~~~l~dfg~~~~  144 (277)
T cd05577          81 KYHIYNVGEPGFPEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVL---LDDHGNVRISDLGLAVE  144 (277)
T ss_pred             HHHHHHcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---ECCCCCEEEccCcchhh
Confidence            999876542   333444455677777766      57899999999   78888899999998874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.77  E-value=2.7e-18  Score=122.72  Aligned_cols=139  Identities=19%  Similarity=0.213  Sum_probs=112.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~l   87 (167)
                      .++|...+.||+|++|.||++.. .++..+++|.++...  ......+.+|+.++..++|||++++.+++...  +..++
T Consensus         4 ~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~ni~~~~~~~~~~~~~~~~l   83 (293)
T cd07843           4 VDEYEKLNRIEEGTYGVVYRARDKKTGEIVALKKLKMEKEKEGFPITSLREINILLKLQHPNIVTVKEVVVGSNLDKIYM   83 (293)
T ss_pred             hhhhhhhhhhcCCCCeEEEEEEECCCCcEEEEEEEeeccccccchhhHHHHHHHHHhcCCCCEEEEEEEEEecCCCcEEE
Confidence            46799999999999999999995 468889999876432  22334567899999999999999999998877  88999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++ +|.+.+.....  .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+..
T Consensus        84 v~e~~~~-~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nil---i~~~~~~~l~d~g~~~~  155 (293)
T cd07843          84 VMEYVEH-DLKSLMETMKQPFLQSEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLL---LNNRGILKICDFGLARE  155 (293)
T ss_pred             EehhcCc-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEE---ECCCCcEEEeecCceee
Confidence            9999975 89888876432  4445556677888888774      6899999999   88888999999998763

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.77  E-value=2.6e-18  Score=122.19  Aligned_cols=137  Identities=21%  Similarity=0.287  Sum_probs=111.8

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|+..+.||+|++|.||++.. .++..+++|.+....  ......+.+|+++++.++|||++++++++...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (284)
T cd07860           1 NFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFEF   80 (284)
T ss_pred             CceeeeeecCCCceEEEEEEECCCCCEEEEEEccccccccccchHHHHHHHHHHhcCCCCCcchhhhcccCCcEEEEeec
Confidence            478889999999999999984 478899999875432  23345688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++ ++|.+++.....   .....+..+.+++.++++      +|+++++.|++   +..+..++++|||.++.
T Consensus        81 ~~-~~l~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nil---l~~~~~~~l~dfg~~~~  149 (284)
T cd07860          81 LH-QDLKKFMDASPLSGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL---INTEGAIKLADFGLARA  149 (284)
T ss_pred             cc-cCHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCCEEEeeccchhh
Confidence            96 588888865432   334455566778888877      47899999999   88888999999998763

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.77  E-value=1.4e-19  Score=126.19  Aligned_cols=142  Identities=17%  Similarity=0.164  Sum_probs=114.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC-C----CcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeec-C
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA-D----ERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLE-T   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~----~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~   82 (167)
                      ..-..|+....||+|.+|.||++... +    ...+|+|.++..+.  +......+|+-+++.++|||++.+..++.. +
T Consensus        21 e~l~~ye~ig~Ig~GTYG~VykA~~~~~n~kr~k~yAiKkfk~~kd~tGiS~SAcREiaL~REl~h~nvi~Lv~Vfl~~d  100 (438)
T KOG0666|consen   21 EDLFEYEGIGKIGRGTYGKVYKAVRKNTNDKRTKEYAIKKFKGEKDGTGISMSACREIALLRELKHPNVISLVKVFLSHD  100 (438)
T ss_pred             HHHHHhhccceecccccceeeEeeeccCCcccchhhHHHHHhccCCCCCcCHHHHHHHHHHHHhcCCcchhHHHHHhccC
Confidence            34457899999999999999999632 2    23689998876532  344667899999999999999999999877 6


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc------chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc----CCcc
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE------DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG----LAPK  146 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~------~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~----~~~~  146 (167)
                      ..+++++||.+. ||++.|+-.+.      +.....+...|++.|+.|+      |||+||.||+   +..+    +.+|
T Consensus       101 ~~v~l~fdYAEh-DL~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaNIl---vmgdgperG~VK  176 (438)
T KOG0666|consen  101 KKVWLLFDYAEH-DLWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPANIL---VMGDGPERGRVK  176 (438)
T ss_pred             ceEEEEehhhhh-hHHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcceEE---EeccCCccCeeE
Confidence            789999999988 99999985432      3444556678999999984      6999999999   6666    7899


Q ss_pred             ccccchhhhh
Q 040049          147 RKKFEEEKWR  156 (167)
Q Consensus       147 l~df~~~~~~  156 (167)
                      |+|+|+|+..
T Consensus       177 IaDlGlaR~~  186 (438)
T KOG0666|consen  177 IADLGLARLF  186 (438)
T ss_pred             eecccHHHHh
Confidence            9999999954

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.77  E-value=5e-18  Score=122.03  Aligned_cols=141  Identities=23%  Similarity=0.270  Sum_probs=112.6

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc---
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV---   84 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~---   84 (167)
                      ...++|.+.+.||+|++|.||++.. .+++.+|+|.+....  ......+.+|+.+++.++|||++++++++...+.   
T Consensus         9 ~~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~   88 (310)
T cd07865           9 DEVSKYEKLAKIGQGTFGEVFKARHKKTKQIVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPYN   88 (310)
T ss_pred             chhhheEEEEEeecCCCEEEEEEEECCCCcEEEEEEEeccCCcCCchhHHHHHHHHHHhCCCCCccceEEEEeccccccc
Confidence            3456899999999999999999984 578999999765432  2223456789999999999999999999866543   


Q ss_pred             -----ceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccc
Q 040049           85 -----PLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        85 -----~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                           .++++||+.+ +|.+.+....  ......+..+.+++.++.++      |+|+++.|++   +..+..++++|||
T Consensus        89 ~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil---~~~~~~~kl~dfg  164 (310)
T cd07865          89 RYKGSFYLVFEFCEH-DLAGLLSNKNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANIL---ITKDGILKLADFG  164 (310)
T ss_pred             CCCceEEEEEcCCCc-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE---ECCCCcEEECcCC
Confidence                 4899999965 8888887653  24555666778888888774      6899999999   7888899999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      .+..
T Consensus       165 ~~~~  168 (310)
T cd07865         165 LARA  168 (310)
T ss_pred             Cccc
Confidence            8863

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.77  E-value=4.9e-18  Score=121.46  Aligned_cols=138  Identities=20%  Similarity=0.266  Sum_probs=110.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|++|.||++.. .+++.+++|.+....  ......+.+|+..++.++|||++++++++...+..++|+|
T Consensus         2 ~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   81 (294)
T PLN00009          2 DQYEKVEKIGEGTYGVVYKARDRVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQHGNIVRLQDVVHSEKRLYLVFE   81 (294)
T ss_pred             CceEEEEEecCCCCEEEEEEEecCCCcEEEEEehhhccccccchHHHHHHHHHHHhccCCCEeeEEEEEecCCeEEEEEe
Confidence            5788999999999999999985 478899999875432  2334567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      |+++ +|.+.+.....   .....+..+.+++.++.+      +|+++++.|++   +.. +..++++|||++..
T Consensus        82 ~~~~-~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nil---l~~~~~~~kl~dfg~~~~  152 (294)
T PLN00009         82 YLDL-DLKKHMDSSPDFAKNPRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLL---IDRRTNALKLADFGLARA  152 (294)
T ss_pred             cccc-cHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEE---EECCCCEEEEcccccccc
Confidence            9965 88887765432   233444556788888877      46899999998   653 45678999998864

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.77  E-value=7.1e-19  Score=123.64  Aligned_cols=132  Identities=17%  Similarity=0.226  Sum_probs=101.8

Q ss_pred             ceecccCceeEEEEEeC-CC-------cEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGMLA-DE-------RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~-~~-------~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.||+|+||.||++... .+       ..+++|.+........+.+..|+.+++.++|||++++++++...+..++++||
T Consensus         1 ~~lg~G~~~~Vy~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~e~~~l~~~~h~~iv~~~~~~~~~~~~~lv~e~   80 (258)
T cd05078           1 ESLGQGTFTKIFKGIRREVGDYGELHKTEVLLKVLDKSHRNYSESFFEAASMMSQLSHKHLVLNYGVCVCGDESIMVQEY   80 (258)
T ss_pred             CCCCcccchhheeeeecccccccccccchhhHHhhcchhHHHHHHHHHHHHHHHhCCCCChhheeeEEEeCCCcEEEEec
Confidence            36899999999999742 22       23677766544444556788899999999999999999999998899999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC--------ccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA--------PKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~--------~~l~df~~~~  154 (167)
                      +++|+|.+++.....  ..........+++.++.+      +|+|+++.|++   +.....        ++++|||.+.
T Consensus        81 ~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiH~dlkp~nil---i~~~~~~~~~~~~~~~l~d~g~~~  156 (258)
T cd05078          81 VKFGSLDTYLKKNKNLINISWKLEVAKQLAWALHFLEDKGLTHGNVCAKNVL---LIREEDRKTGNPPFIKLSDPGISI  156 (258)
T ss_pred             CCCCcHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEE---EecccccccCCCceEEeccccccc
Confidence            999999999986543  233333446777777777      57999999999   544433        5888999876

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.76  E-value=7.4e-18  Score=117.88  Aligned_cols=138  Identities=21%  Similarity=0.249  Sum_probs=114.4

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.||++.. .++..+++|.+.....  .....+.+|++.++.++|||++++.+.+...+..++++||
T Consensus         1 ~y~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~~~~~lv~e~   80 (258)
T cd08215           1 KYEIIKQIGKGSFGKVYLVRRKSDGKLYVLKEIDLSNMSEKEREDALNEVKILKKLNHPNIIKYYESFEEKGKLCIVMEY   80 (258)
T ss_pred             CceEEeeeccCCCeEEEEEEEcCCCcEEEEEEeecccCChHHHHHHHHHHHHHHhcCCCChhheEEEEecCCEEEEEEEe
Confidence            578889999999999999995 4688999998765432  4556788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+.+....     ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil---~~~~~~~~l~d~~~~~~  152 (258)
T cd08215          81 ADGGDLSQKIKKQKKEGKPFPEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIF---LTSNGLVKLGDFGISKV  152 (258)
T ss_pred             cCCCcHHHHHHHhhccCCCcCHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeE---EcCCCcEEECCccceee
Confidence            99999999998642     2334455566677777776      46899999999   77788899999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.76  E-value=2.3e-18  Score=120.99  Aligned_cols=130  Identities=25%  Similarity=0.251  Sum_probs=109.0

Q ss_pred             ecccCceeEEEEEeC-CCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGMLA-DERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|+||.||++... +++.+++|.+.....   ...+.+.+|+..++.++|||++++++.+......++++||+++++|
T Consensus         1 lg~g~~~~vy~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (265)
T cd05579           1 ISKGAYGRVFLAKKKSTGDIYAIKVIKKADMIRKNQVDQVLTERDILSQAQSPYVVKLYYSFQGKKNLYLVMEYLPGGDL   80 (265)
T ss_pred             CCCCCceEEEEEEECCCCCEEEEEEecchhhhhhhHHHHHHHHHHHHHhCCCcchhHHHHheecCcEEEEEEecCCCCcH
Confidence            589999999999954 689999998764422   3456788899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .+++..... .....+..+.+++.++.+      +|+|+++.|++   +.++..++++|||++.
T Consensus        81 ~~~l~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil---~~~~~~~~l~dfg~~~  141 (265)
T cd05579          81 ASLLENVGSLDEDVARIYIAEIVLALEYLHSNGIIHRDLKPDNIL---IDSNGHLKLTDFGLSK  141 (265)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHcCeecCCCCHHHeE---EcCCCCEEEEecccch
Confidence            999886543 455566667788888876      47899999999   8888899999999876

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.76  E-value=6.9e-18  Score=118.46  Aligned_cols=133  Identities=26%  Similarity=0.344  Sum_probs=106.4

Q ss_pred             ceecccCceeEEEEEe-CC---CcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-AD---ERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~---~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||+|.. ..   +..+++|.+..... ...+.+.+|+.+++.++|||++++++++. .+..++++||+++
T Consensus         1 ~~ig~G~~g~v~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~~~v~e~~~~   79 (257)
T cd05060           1 KELGHGNFGSVVKGVYLMKSGKEVEVAVKTLKQEHIAAGKKEFLREASVMAQLDHPCIVRLIGVCK-GEPLMLVMELAPL   79 (257)
T ss_pred             CccCccCceeEEEeEeeccCCCcceEEEEecccccchHHHHHHHHHHHHHHhcCCCCeeeEEEEEc-CCceEEEEEeCCC
Confidence            4689999999999973 22   26899998765433 24457889999999999999999999875 4567999999999


Q ss_pred             CCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           95 GNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        95 g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ++|.+++.... ......+..+.+++.++.+      +|+|+++.|++   +.....++++|||.++..
T Consensus        80 ~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lh~~~i~H~di~p~nil---i~~~~~~kl~df~~~~~~  145 (257)
T cd05060          80 GPLLKYLKKRREIPVSDLKELAHQVAMGMAYLESKHFVHRDLAARNVL---LVNRHQAKISDFGMSRAL  145 (257)
T ss_pred             CcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhhcCeeccCcccceEE---EcCCCcEEecccccccee
Confidence            99999998765 2445556667777777776      57899999999   788888999999988743

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.76  E-value=5.4e-19  Score=132.38  Aligned_cols=136  Identities=18%  Similarity=0.251  Sum_probs=111.8

Q ss_pred             cccceecccCceeEEEEEe-CCCcEEEEEeccC----CCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc--ceEEE
Q 040049           17 NVNIVLGQGGQGTVHKGML-ADERIVAVKKSKV----VGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV--PLLVY   89 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~----~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~--~~lv~   89 (167)
                      .....||+|+|-+||+|.+ .+|..||.-.++.    ..+...+++..|+.+++.|+||||++++++|.+...  +-+|+
T Consensus        43 k~~evLGrGafKtVYka~De~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKsL~H~NIirfy~SW~d~~n~~in~iT  122 (632)
T KOG0584|consen   43 KFDEVLGRGAFKTVYKAFDEEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKSLKHPNIIRFYDSWVDTDNKTINFIT  122 (632)
T ss_pred             ehhhhcccccceeeeeccccccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHccCCCCceeeeeeheecCCCceeeeee
Confidence            3346799999999999985 4677777654322    245667899999999999999999999999987655  77999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      |.+..|+|..+.++.+. +.........||+.||.|        +|||+|.+|||   +... +.+||.|.|+|..
T Consensus       123 EL~TSGtLr~Y~kk~~~vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIF---inG~~G~VKIGDLGLAtl  195 (632)
T KOG0584|consen  123 ELFTSGTLREYRKKHRRVNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIF---VNGNLGEVKIGDLGLATL  195 (632)
T ss_pred             ecccCCcHHHHHHHhccCCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEE---EcCCcCceeecchhHHHH
Confidence            99999999999998764 556666778899999988        57999999998   4432 6899999999984

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.76  E-value=5.5e-20  Score=138.75  Aligned_cols=147  Identities=20%  Similarity=0.254  Sum_probs=116.9

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +.+.++.-||.|+||+||++. ..++-..|.|.+........+.++-|+.++...+||+|+++++.|...+.+|++.|||
T Consensus        32 d~WeIiGELGDGAFGKVyKA~nket~~lAAaKvIetkseEELEDylVEIeILa~CdHP~ivkLl~ayy~enkLwiliEFC  111 (1187)
T KOG0579|consen   32 DHWEIIGELGDGAFGKVYKAVNKETKLLAAAKVIETKSEEELEDYLVEIEILAECDHPVIVKLLSAYYFENKLWILIEFC  111 (1187)
T ss_pred             HHHHHHhhhcCccchhhhhhhcccchhhhhhhhhcccchhHHhhhhhhhhhhhcCCChHHHHHHHHHhccCceEEEEeec
Confidence            456777889999999999998 4456666778888777888899999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhh--HHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch-hhhhhhhhhhh
Q 040049           93 PNGNLSDYLHEQNEDFVKD--VGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE-EKWRHTVLKRK  163 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~--~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~-~~~~~~i~hr~  163 (167)
                      .||-....+-..+.....+  .....+++.+|.|      +|+|+|.+||+   +..++.+.++|||- |+....+-.||
T Consensus       112 ~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iIHRDLKAGNiL---~TldGdirLADFGVSAKn~~t~qkRD  188 (1187)
T KOG0579|consen  112 GGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNIIHRDLKAGNIL---LTLDGDIRLADFGVSAKNKSTRQKRD  188 (1187)
T ss_pred             CCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchhhhhccccceE---EEecCcEeeecccccccchhHHhhhc
Confidence            9998888777665433222  2224445555555      68999999999   89999999999995 44444554444

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.76  E-value=7.3e-18  Score=118.56  Aligned_cols=132  Identities=25%  Similarity=0.450  Sum_probs=102.1

Q ss_pred             ceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCcceEEEecCC
Q 040049           20 IVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEVPLLVYEYIP   93 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~~~lv~e~~~   93 (167)
                      +.||+|+||.||+|...    ....+++|.+... .......+.+|+.+++.++|||++++++++.. ++..++++||++
T Consensus         1 ~~lg~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~e~~~   80 (262)
T cd05058           1 RVIGKGHFGCVYHGTLIDSDGQKIHCAVKSLNRITDLEEVEQFLKEGIIMKDFSHPNVLSLLGICLPSEGSPLVVLPYMK   80 (262)
T ss_pred             CcccccCCceEEEEEEecCCCceEEEEEEecCccCCHHHHHHHHHHHHHHccCCCCCcceEEEEeecCCCCcEEEEecCC
Confidence            36899999999999742    2357899987533 33445678899999999999999999997754 456789999999


Q ss_pred             CCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           94 NGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        94 ~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|+|.+++.....  ..........+++.++.+      +|+|+++.|++   +.....++++|||.++
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlk~~nil---i~~~~~~kl~dfg~~~  146 (262)
T cd05058          81 HGDLRNFIRSETHNPTVKDLIGFGLQVAKGMEYLASKKFVHRDLAARNCM---LDESFTVKVADFGLAR  146 (262)
T ss_pred             CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccCcceEE---EcCCCcEEECCccccc
Confidence            9999999976432  122223344577777766      57899999999   7788889999999886

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.76  E-value=7.9e-18  Score=118.44  Aligned_cols=131  Identities=23%  Similarity=0.209  Sum_probs=107.7

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||.|++|.||++.. .+++.+++|.+....   ......+.+|+.+++.++|||++++++.+.+.+..++++||+++++|
T Consensus         1 lg~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e~~~~~~L   80 (262)
T cd05572           1 LGVGGFGRVELVKVKSKNRTFALKCVKKRHIVETGQQEHIFSEKEILEECNHPFIVKLYRTFKDKKYIYMLMEYCLGGEL   80 (262)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhCCCCCEeeeeeeEEcCCccEEEEecCCCCcH
Confidence            68999999999995 468899999876432   23345688999999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+++.+... ........+.+++.++.+      +|+++++.||+   +..+..++++|||+++.
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nil---v~~~~~~~l~df~~~~~  142 (262)
T cd05572          81 WTILRDRGLFDEYTARFYIACVVLAFEYLHNRGIIYRDLKPENLL---LDSNGYVKLVDFGFAKK  142 (262)
T ss_pred             HHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCHHHEE---EcCCCCEEEeeCCcccc
Confidence            999987543 333444455677777766      57899999999   77888999999999874

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=99.76  E-value=5.9e-18  Score=122.26  Aligned_cols=133  Identities=19%  Similarity=0.171  Sum_probs=100.4

Q ss_pred             ceecccCceeEEEEEeC---CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA---DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~lv~e~~~~   94 (167)
                      ..||+|+||.||+|...   ++..+|+|.+....  ......+|+.+++.++||||+++++.+..  ....++++||+.+
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~aiK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07868           7 CKVGRGTYGHVYKAKRKDGKDDRDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWLLFDYAEH   84 (317)
T ss_pred             cccccCCCeEEEEEEEccCCCCceEEEEEECCCC--CcHHHHHHHHHHHhcCCCCCcceeeeEecCCCcEEEEEEeccCC
Confidence            57999999999999843   46789999876432  23457789999999999999999998854  3457899999865


Q ss_pred             CCHHHHHhhcC----------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh-hccCCccccccchhhh
Q 040049           95 GNLSDYLHEQN----------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL-LKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~----------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~-~~~~~~~l~df~~~~~  155 (167)
                       +|.+++....          .+....+..+.|++.|+.+      +|+|+|++||++..- .....++++|||.++.
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07868          85 -DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             -CHHHHHHhcccccccCCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceec
Confidence             8888876321          1233445567788888877      478999999982110 2346789999999874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.76  E-value=5.7e-18  Score=119.63  Aligned_cols=140  Identities=21%  Similarity=0.251  Sum_probs=113.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC-----
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETE-----   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~-----   83 (167)
                      ..+++|.+.+.||+|++|.+|.+.. .+++.+++|.+..... ..+.+.+|+.+++.+ .|||++++++++....     
T Consensus         3 ~~~~~y~~~~~l~~g~~~~v~~~~~~~~~~~~~~k~~~~~~~-~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~~~   81 (275)
T cd06608           3 DPTGIFELVEVIGEGTYGKVYKARHKKTGQLVAIKIMDIIED-EEEEIKEEYNILRKYSNHPNIATFYGAFIKKNPPGND   81 (275)
T ss_pred             CchhheeheeeecCCCCeEEEEEEECCCCcEEEEEEEecCch-hHHHHHHHHHHHHHhcCCCChheEEEEEEecCCCCcc
Confidence            4568999999999999999999995 4678899998764433 346788999999998 6999999999997654     


Q ss_pred             -cceEEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           84 -VPLLVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        84 -~~~lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                       ..++++||+++++|.+++....     ......+..+.+++.++.+      +|+++++.|++   +..+..++++|||
T Consensus        82 ~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~---~~~~~~~~l~d~~  158 (275)
T cd06608          82 DQLWLVMELCGGGSVTDLVKGLRKKGKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNIL---LTKNAEVKLVDFG  158 (275)
T ss_pred             eEEEEEEEcCCCCcHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEE---EccCCeEEECCCc
Confidence             4899999999999999887532     2344455567778888777      57899999999   7778889999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      .+.
T Consensus       159 ~~~  161 (275)
T cd06608         159 VSA  161 (275)
T ss_pred             cce
Confidence            875

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.76  E-value=1.3e-17  Score=116.65  Aligned_cols=138  Identities=21%  Similarity=0.268  Sum_probs=115.2

Q ss_pred             CCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceEEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLLVY   89 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~lv~   89 (167)
                      +|...+.||+|++|.+|++... ++..+++|.+.....  ...+.+.+|+..++.++|||++++++.+...  +..++++
T Consensus         1 ~~~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~   80 (260)
T cd06606           1 EWTRGELLGRGSFGSVYLALDKDTGELMAVKSVELSGDSEEELEALEREIRILSSLQHPNIVRYYGSERDEEKNTLNIFL   80 (260)
T ss_pred             CceeeeEeeecCceEEEEEEECCCCcEEEEEEeeccccchHHHHHHHHHHHHHHHcCCCCEeeEEEEEecCCCCeEEEEE
Confidence            4777899999999999999954 788999998765432  4456788999999999999999999999888  8899999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++++++|.+++..... .....+..+.+++.++.+      +|+++++.|++   +..+..++++|||.+..
T Consensus        81 e~~~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~---i~~~~~~~l~d~~~~~~  150 (260)
T cd06606          81 EYVSGGSLSSLLKKFGKLPEPVIRKYTRQILEGLAYLHSNGIVHRDIKGANIL---VDSDGVVKLADFGCAKR  150 (260)
T ss_pred             EecCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---EcCCCCEEEcccccEEe
Confidence            99999999999887642 445556667778877776      47899999999   77788999999998763

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.76  E-value=7.2e-18  Score=119.86  Aligned_cols=136  Identities=20%  Similarity=0.234  Sum_probs=112.1

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceEEEe
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLLVYE   90 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~lv~e   90 (167)
                      |.+.+.||+|++|.||++.. .++..+++|.+....  ......+.+|+.+++.++|||++++++++...  +..++++|
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~lv~e   80 (287)
T cd07840           1 YEKIAQIGEGTYGQVYKARNKKTGELVALKKIRMENEKEGFPITAIREIKLLQKLRHPNIVRLKEIVTSKGKGSIYMVFE   80 (287)
T ss_pred             CeeeEEeccCCCeEEEEEEECCCCeEEEEEEEecccccccchHHHHHHHHHHHhccCCCeeeheeeEecCCCCcEEEEec
Confidence            56788999999999999985 468899999886552  34445688899999999999999999999887  78999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++ +|.+.+....  ......+..+.+++.++.++      |+++++.|++   +.++..++++|||.+..
T Consensus        81 ~~~~-~l~~~~~~~~~~~~~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil---~~~~~~~~l~d~g~~~~  149 (287)
T cd07840          81 YMDH-DLTGLLDSPEVKFTESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNIL---INNDGVLKLADFGLARP  149 (287)
T ss_pred             cccc-cHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeE---EcCCCCEEEccccceee
Confidence            9975 8988887652  24445566677888888774      6899999999   88888999999998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.76  E-value=7.2e-18  Score=123.66  Aligned_cols=139  Identities=19%  Similarity=0.206  Sum_probs=111.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------   82 (167)
                      ..++|...+.||+|+||.||++.. .++..+++|.+...  .......+.+|+.+++.++|||++++++++...      
T Consensus        14 ~~~~y~~~~~lg~g~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   93 (353)
T cd07850          14 VLKRYQNLKPIGSGAQGIVCAAYDTVTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKLVNHKNIIGLLNVFTPQKSLEEF   93 (353)
T ss_pred             hhcceEEEEEeccCCCEEEEEEEECCCCCEEEEEecCccccChhHHHHHHHHHHHHHhcCCCCCcceeeeeccCCCcccc
Confidence            467899999999999999999984 57899999987532  233445677899999999999999999988543      


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ...++++||+.+ +|.+.+... ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        94 ~~~~lv~e~~~~-~l~~~~~~~-l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil---~~~~~~~kL~Dfg~~~~  167 (353)
T cd07850          94 QDVYLVMELMDA-NLCQVIQMD-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  167 (353)
T ss_pred             CcEEEEEeccCC-CHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE---ECCCCCEEEccCcccee
Confidence            346999999965 888877654 3344455556777777766      57899999999   78888999999999874

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=8.5e-21  Score=128.98  Aligned_cols=140  Identities=21%  Similarity=0.262  Sum_probs=113.1

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEec--cCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKS--KVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~--~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----   82 (167)
                      ...+.|....++|+|.||.|++++ ..+++.|++|++  ...+.+......+|++++..++|+|++.+++.|.+.     
T Consensus        14 ~~~~~yek~~kigqGtfgeVFkAr~~n~~kkvalkkvlmeneKeGfpitalreikiL~~lkHenv~nliEic~tk~Tp~~   93 (376)
T KOG0669|consen   14 DEVSKYEKLAKIGQGTFGEVFKARSKNTGKKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKATPTN   93 (376)
T ss_pred             ecchHHHHHHhcCCchHHHHHHHhhcCccchhHHHHHHHhccccCCcHHHHHHHHHHHHhcchhHHHHHHHHhhccCCcc
Confidence            345678888899999999999998 457888888853  444556667788999999999999999999988543     


Q ss_pred             ---CcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           83 ---EVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        83 ---~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                         ..+|+|+++|+. +|.-++.+...  ..........+...|+.+      +|||+|++|++   |.++...|++|||
T Consensus        94 r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr~kilHRDmKaaNvL---It~dgilklADFG  169 (376)
T KOG0669|consen   94 RDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHRNKILHRDMKAANVL---ITKDGILKLADFG  169 (376)
T ss_pred             cccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHhhHHhhcccHhhEE---EcCCceEEeeccc
Confidence               348999999987 99999887643  344445556667777766      67899999999   9999999999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      +|+
T Consensus       170 lar  172 (376)
T KOG0669|consen  170 LAR  172 (376)
T ss_pred             ccc
Confidence            998

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.76  E-value=5.9e-18  Score=121.86  Aligned_cols=139  Identities=25%  Similarity=0.307  Sum_probs=110.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .+.|...+.||+|++|.||++.. .+++.+++|.+.....   .....+.+|+.+++.++|||++++.+++...+..++|
T Consensus        14 ~~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~l~h~niv~~~~~~~~~~~~~lv   93 (307)
T cd06607          14 EKLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQLRHPNTIEYKGCYLREHTAWLV   93 (307)
T ss_pred             chhhhhheeecCCCCeEEEEEEEcCCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHhCCCCCEEEEEEEEEeCCeEEEE
Confidence            45688899999999999999984 4788999998754322   2335678999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++ ++.+.+.....  ........+.+++.++.++      |+++++.||+   +..+..++++|||++..
T Consensus        94 ~e~~~g-~l~~~~~~~~~~l~~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl---~~~~~~~kL~dfg~~~~  164 (307)
T cd06607          94 MEYCLG-SASDILEVHKKPLQEVEIAAICHGALQGLAYLHSHERIHRDIKAGNIL---LTEPGTVKLADFGSASL  164 (307)
T ss_pred             HHhhCC-CHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEE---ECCCCCEEEeecCccee
Confidence            999975 77777654322  3334444566777777774      6899999999   78888999999998864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.75  E-value=1.3e-17  Score=117.87  Aligned_cols=142  Identities=15%  Similarity=0.118  Sum_probs=108.9

Q ss_pred             HHHHHhhhcCCccccee--cccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049            6 AKELDKATDHLNVNIVL--GQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~i--g~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ..+.....++|.+.+.+  |+|+||.||++.. .++..+++|.+........     |+.....+ +|||++++++.+..
T Consensus         6 ~~~~~~~~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~-----e~~~~~~~~~h~~iv~~~~~~~~   80 (267)
T PHA03390          6 LSELVQFLKNCEIVKKLKLIDGKFGKVSVLKHKPTQKLFVQKIIKAKNFNAI-----EPMVHQLMKDNPNFIKLYYSVTT   80 (267)
T ss_pred             HHHHHHHHHhhccccceeecCCCceEEEEEEEcCCCcEEEEEEEehhhcchh-----hHHHHHHhhcCCCEEEEEEEEec
Confidence            34455556777777776  9999999999984 5788899998754322211     22222222 69999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-Cccccccchh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-APKRKKFEEE  153 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-~~~l~df~~~  153 (167)
                      .+..++++||+++++|.+++.... ......+..+.+++.++.+      +|+|+++.|++   +..+. .++++|||.+
T Consensus        81 ~~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil---~~~~~~~~~l~dfg~~  157 (267)
T PHA03390         81 LKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVL---YDRAKDRIYLCDYGLC  157 (267)
T ss_pred             CCeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE---EeCCCCeEEEecCccc
Confidence            999999999999999999998764 3556666777888888877      46899999998   66666 7899999987


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       158 ~~  159 (267)
T PHA03390        158 KI  159 (267)
T ss_pred             ee
Confidence            64

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.75  E-value=4.4e-18  Score=124.32  Aligned_cols=139  Identities=19%  Similarity=0.241  Sum_probs=113.1

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC---------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET---------   82 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~---------   82 (167)
                      .++|.+.+.||.|+||.||++.. .++..+++|.+........+.+.+|+.+++.++|||++++++.+...         
T Consensus         4 ~~~y~~~~~Lg~g~~g~vy~~~~~~~~~~v~iK~i~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (342)
T cd07854           4 GSRYMDLRPLGCGSNGLVFSAVDSDCDKRVAVKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVYEVLGPSGSDLTEDVG   83 (342)
T ss_pred             CcceEEEEEecCCCCEEEEEEEECCCCcEEEEEEEecCCCchHHHHHHHHHHHHhcCCCcchhhHhhhcccccccccccc
Confidence            47899999999999999999984 57889999988666556667788999999999999999999876543         


Q ss_pred             -----CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh-ccCCcccccc
Q 040049           83 -----EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL-KGLAPKRKKF  150 (167)
Q Consensus        83 -----~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~-~~~~~~l~df  150 (167)
                           ...++++||+++ +|.+.+.....+....+..+.+++.++.+      +|+++++.|++   +. .+..++++||
T Consensus        84 ~~~~~~~~~lv~e~~~~-~L~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nil---i~~~~~~~kl~df  159 (342)
T cd07854          84 SLTELNSVYIVQEYMET-DLANVLEQGPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVF---INTEDLVLKIGDF  159 (342)
T ss_pred             cccccceEEEEeecccc-cHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---EcCCCceEEECCc
Confidence                 347899999975 89888876544566666777888888876      57899999998   54 4557799999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       160 g~~~~  164 (342)
T cd07854         160 GLARI  164 (342)
T ss_pred             cccee
Confidence            98864

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.75  E-value=8.6e-18  Score=120.54  Aligned_cols=141  Identities=24%  Similarity=0.267  Sum_probs=113.4

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC----
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETE----   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~----   83 (167)
                      ...++|++.+.+|+|++|.||++.. .+++.+++|.+....  ......+.+|+.+++.++|||++++++++.+..    
T Consensus         4 ~~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~~~~~~~~~~~~~~   83 (302)
T cd07864           4 RCVDKFDIIGQIGEGTYGQVYKARDKDTGELVALKKVRLDNEKEGFPITAIREIKILRQLNHRNIVNLKEIVTDKQDALD   83 (302)
T ss_pred             hhhhhhheeeeecccCCEEEEEEEECCCCcEEEEEEEeecccccCchHHHHHHHHHHHhCCCCCeeeeeheecCcchhhh
Confidence            3567899999999999999999995 468899999875432  233356778999999999999999999987654    


Q ss_pred             ------cceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccc
Q 040049           84 ------VPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        84 ------~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                            ..++++||+++ ++.+.+....  ......+..+.+++.+++++      |+++++.|++   +.++..++++|
T Consensus        84 ~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nil---i~~~~~~kl~d  159 (302)
T cd07864          84 FKKDKGAFYLVFEYMDH-DLMGLLESGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNIL---LNNKGQIKLAD  159 (302)
T ss_pred             ccccCCcEEEEEcccCc-cHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCcEEeCc
Confidence                  68999999976 7777776542  24455666677888888775      6899999999   78888999999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.+..
T Consensus       160 fg~~~~  165 (302)
T cd07864         160 FGLARL  165 (302)
T ss_pred             cccccc
Confidence            998874

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.75  E-value=8.6e-18  Score=121.08  Aligned_cols=140  Identities=19%  Similarity=0.229  Sum_probs=111.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~   86 (167)
                      ..++|.+.+.||+|++|.||++.. .+++.+|+|.+....  ........+|+.+++.++|+|++++++++...  +..+
T Consensus         5 ~~~~y~~~~~ig~g~~~~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~   84 (309)
T cd07845           5 SVTEFEKLNRIGEGTYGIVYRARDTTSGEIVALKKVRMDNERDGIPISSLREITLLLNLRHPNIVELKEVVVGKHLDSIF   84 (309)
T ss_pred             cccceeEeeeeeecCCEEEEEEEECCCCcEEEEEEEEeccCCCCCcchhhHHHHHHHhCCCCCCcceEEEEecCCCCeEE
Confidence            457899999999999999999995 578999999875432  22233466899999999999999999998755  5689


Q ss_pred             EEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+.+ +|.+++....  ......+..+.+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        85 lv~e~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil---~~~~~~~kL~dfg~~~~  157 (309)
T cd07845          85 LVMEYCEQ-DLASLLDNMPTPFSESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLL---LTDKGCLKIADFGLART  157 (309)
T ss_pred             EEEecCCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCCEEECccceeee
Confidence            99999975 8888877542  2344555667778877776      57899999999   77888899999998874

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.75  E-value=9.2e-18  Score=120.00  Aligned_cols=137  Identities=20%  Similarity=0.271  Sum_probs=108.6

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCc-----
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEV-----   84 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~-----   84 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+++|......  ......+.+|+.+++.+. |||++++++++...+.     
T Consensus         1 ~~y~~~~~lg~g~~g~vy~~~~~~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~~   80 (295)
T cd07837           1 DAYEKLEKIGEGTYGKVYKARDKNTGKLVALKKTRLEMDEEGIPPTALREISLLQMLSESIYIVRLLDVEHVEEKNGKPS   80 (295)
T ss_pred             CCceEeeEecccCCeEEEEEEECCCCcEEEEEeehhhccccCCchHHHHHHHHHHHccCCCCccceeeeEeecCCCCCce
Confidence            4688899999999999999984 578999999765432  223456788999999995 6999999999877655     


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFE  151 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~  151 (167)
                      .|+++||+++ +|.+++.....      .....+..+.+++.++.+      +|+++++.|++   +.. +..++++|||
T Consensus        81 ~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil---~~~~~~~~kl~dfg  156 (295)
T cd07837          81 LYLVFEYLDS-DLKKFMDSNGRGPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLL---VDKQKGLLKIADLG  156 (295)
T ss_pred             EEEEeeccCc-CHHHHHHHhcccCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEE---EecCCCeEEEeecc
Confidence            8999999986 88888765321      334455567778888877      47899999999   776 7788999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      .++
T Consensus       157 ~~~  159 (295)
T cd07837         157 LGR  159 (295)
T ss_pred             cce
Confidence            876

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.75  E-value=4.8e-18  Score=118.91  Aligned_cols=138  Identities=23%  Similarity=0.300  Sum_probs=112.9

Q ss_pred             CCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|.+.+.||+|++|.+|++. ..+++.+++|.+...  .......+.+|+.+++.++|||++++.+++......++++||
T Consensus         1 ~y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~   80 (256)
T cd08530           1 DFKVLKKLGKGSYGSVYKVKRLSDNQFYALKEVDLGSMSQKEREDAVNEIRILASVNHPNIISYKEAFLDGNKLCIVMEY   80 (256)
T ss_pred             CceEeeeecCCCceeEEEEEECCCCCEEEEEEEehhhccHHHHHHHHHHHHHHHhCCCCCchhhhhhhccCCEEEEEehh
Confidence            47888999999999999998 457889999987543  233455678899999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++|.+++....     ......+..+.+++.++.+      +|+++++.|++   +..+...+++|||.++.
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~---~~~~~~~kl~d~g~~~~  152 (256)
T cd08530          81 APFGDLSKAISKRKKKRKLIPEQEIWRIFIQLLRGLQALHEQKILHRDLKSANIL---LVANDLVKIGDLGISKV  152 (256)
T ss_pred             cCCCCHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEE---EecCCcEEEeeccchhh
Confidence            99999999987632     2334455666677777766      57899999999   77788899999998874

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.75  E-value=5.9e-18  Score=123.33  Aligned_cols=140  Identities=20%  Similarity=0.245  Sum_probs=112.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecC--Ccc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLET--EVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~--~~~   85 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+++|.+...  .......+.+|+.++..+ +||||+++++++...  ...
T Consensus         5 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~ni~~~~~~~~~~~~~~~   84 (337)
T cd07852           5 ILRKYEILQKLGKGAYGIVWKAIDRRTKEVVALKKIFDAFRNATDAQRTFREIMFLQELGDHPNIVKLLNVIKAENDKDI   84 (337)
T ss_pred             hhhHHHHhHhhcCCCCeeEEEEEEcCCCeEEEEEeeccccCcchhhhhhhHHHHHHHHhcCCCCccceeeeeccCCCceE
Confidence            457899999999999999999985 46888999976432  223345677899999999 999999999998654  357


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+++ +|.+.+..........+..+.+++.++.++      |+|+++.|++   +..+..++++|||.+..
T Consensus        85 ~lv~e~~~~-~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nil---l~~~~~~kl~d~g~~~~  156 (337)
T cd07852          85 YLVFEYMET-DLHAVIRANILEDVHKRYIMYQLLKALKYIHSGNVIHRDLKPSNIL---LNSDCRVKLADFGLARS  156 (337)
T ss_pred             EEEeccccc-CHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCcEEEeeccchhc
Confidence            999999975 999988765434455556677888888774      7899999999   88889999999998874

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.75  E-value=1.1e-17  Score=117.28  Aligned_cols=138  Identities=18%  Similarity=0.295  Sum_probs=109.8

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +|...+.||+|+||.||++.. .++..+++|.+...  .....+.+.+|+.+++.++|||++++++.+...+..++++||
T Consensus         1 ~~~~~~~l~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~~h~~i~~~~~~~~~~~~~~lv~e~   80 (257)
T cd08225           1 RYEIIKKIGEGSFGKIYLAKAKSDSEHCVIKEIDLTKMPVKEKEASKKEVILLAKMKHPNIVTFFASFQENGRLFIVMEY   80 (257)
T ss_pred             CceEEEEecCCCcceEEEEEEcCCCceEEEEEeeHhhccchhhHHHHHHHHHHHhCCCCChhhhhheeccCCeEEEEEec
Confidence            477889999999999999984 46888999987543  223445778999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      +++++|.+++.....   ........+.+++.++.+      +|+|+++.|++   +.++ ..++++|||.+..
T Consensus        81 ~~~~~L~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil---~~~~~~~~~l~d~~~~~~  151 (257)
T cd08225          81 CDGGDLMKRINRQRGVLFSEDQILSWFVQISLGLKHIHDRKILHRDIKSQNIF---LSKNGMVAKLGDFGIARQ  151 (257)
T ss_pred             CCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEE---EcCCCCeEEecccccchh
Confidence            999999999876432   333444455667777766      57899999998   6555 3458999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.75  E-value=1.8e-17  Score=117.88  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=100.1

Q ss_pred             eecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHH---HhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           21 VLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVI---LSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~---~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      .||+|+||.||++.. .+++.+|+|.+.....   .......+|..+   +...+||+++.+.+.+...+..++++||++
T Consensus         1 ~lg~G~~g~Vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~   80 (279)
T cd05633           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFHTPDKLCFILDLMN   80 (279)
T ss_pred             CcccCCCeEEEEEEECCCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEecCCeEEEEEecCC
Confidence            479999999999984 5688999997754321   112223344433   334479999999999999899999999999


Q ss_pred             CCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           94 NGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        94 ~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++|.+++..... ..........+++.++.+      +|+|++++||+   +..+..++++|||++.
T Consensus        81 ~~~L~~~i~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil---~~~~~~~~l~dfg~~~  145 (279)
T cd05633          81 GGDLHYHLSQHGVFSEKEMRFYATEIILGLEHMHNRFVVYRDLKPANIL---LDEHGHVRISDLGLAC  145 (279)
T ss_pred             CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEE---ECCCCCEEEccCCcce
Confidence            9999998876543 444555566777777776      57899999999   7788889999999875

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.75  E-value=7.6e-19  Score=130.25  Aligned_cols=141  Identities=19%  Similarity=0.203  Sum_probs=113.1

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccC--CCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcce
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~--~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~   86 (167)
                      ..+...|++.++||+|+.+.||++..++.+.+|+|++..  .+......+.+|+..+..++ |.+|++++++-..++++|
T Consensus       357 ~Vkg~~Yeilk~iG~GGSSkV~kV~~s~~~iyalkkv~~~~~D~qtl~gy~nEI~lL~KLkg~~~IIqL~DYEv~d~~lY  436 (677)
T KOG0596|consen  357 KVKGREYEILKQIGSGGSSKVFKVLNSDKQIYALKKVVLLEADNQTLDGYRNEIALLNKLKGHDKIIQLYDYEVTDGYLY  436 (677)
T ss_pred             EECcchhhHHHhhcCCCcceeeeeecCCCcchhhhHHHHhhcCHHHHHHHHHHHHHHHHhcCCceEEEEeeeeccCceEE
Confidence            345678999999999999999999977778888886543  46677889999999999995 899999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCcch-----HhhHHHHHHHHcCc---hhhhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDF-----VKDVGFILSRRGGI---PRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~-----~~~~~~~~~i~~~l---~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+-+ .||.+++++.....     ..-|.+++++++-+   ..+|.|+||.|++   +.+|. .||.|||.|..
T Consensus       437 mvmE~Gd-~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~gIVHSDLKPANFL---lVkG~-LKLIDFGIA~a  508 (677)
T KOG0596|consen  437 MVMECGD-IDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHGIVHSDLKPANFL---LVKGR-LKLIDFGIANA  508 (677)
T ss_pred             EEeeccc-ccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhceeecCCCcccEE---EEeee-EEeeeechhcc
Confidence            9999774 49999999875422     23455555554444   3479999999998   67655 56669999984

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.75  E-value=2.7e-19  Score=129.20  Aligned_cols=140  Identities=20%  Similarity=0.190  Sum_probs=120.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ...+|..+.+||+|+||+|..+.. .+.+.+|+|+++..   ...+.+-.+.|-+++... +.|.+++++.+|.+.+.+|
T Consensus       347 ~~tDFnFl~VlGKGSFGKVlLaerkgtdELyAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTmDRLy  426 (683)
T KOG0696|consen  347 KATDFNFLMVLGKGSFGKVLLAERKGTDELYAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTMDRLY  426 (683)
T ss_pred             eecccceEEEeccCccceeeeecccCcchhhhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhhhhee
Confidence            345788888999999999999984 46788999977543   234556677888888877 5799999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||+.||+|.-.|++.+. ..+....+...|+.+|-++|      ||+|.+|++   ++..+.+||+|||..+
T Consensus       427 FVMEyvnGGDLMyhiQQ~GkFKEp~AvFYAaEiaigLFFLh~kgIiYRDLKLDNvm---Ld~eGHiKi~DFGmcK  498 (683)
T KOG0696|consen  427 FVMEYVNGGDLMYHIQQVGKFKEPVAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVM---LDSEGHIKIADFGMCK  498 (683)
T ss_pred             eEEEEecCchhhhHHHHhcccCCchhhhhhHHHHHHhhhhhcCCeeeeeccccceE---eccCCceEeeeccccc
Confidence            99999999999999998764 66778888899999998877      799999999   9999999999999877

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.75  E-value=5.5e-18  Score=123.42  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~   85 (167)
                      .++|.+.+.||+|++|.||++.. .++..+++|.+....  ......+.+|+.+++.++||||+++++++..    ....
T Consensus         4 ~~~y~~~~~lg~g~~g~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   83 (334)
T cd07855           4 GSRYKPIENIGSGAYGVVCSAIDTRSGKKVAIKKIPHAFDVPTLAKRTLRELKILRHFKHDNIIAIRDILRPPGADFKDV   83 (334)
T ss_pred             hhceeeeeeeecCCCeEEEEEEEcCCCCEEEEEEeccccccccchHHHHHHHHHHHhcCCCCccCHHHhccccCCCCceE
Confidence            47899999999999999999984 578999999876432  2345667889999999999999999998753    3467


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++||+. ++|.+++..... .....+..+.+++.++.+      +|+++++.|++   +..+..++++|||.++.
T Consensus        84 ~lv~e~~~-~~l~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil---~~~~~~~kl~dfg~~~~  156 (334)
T cd07855          84 YVVMDLME-SDLHHIIHSDQPLTEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLL---VNEDCELRIGDFGMARG  156 (334)
T ss_pred             EEEEehhh-hhHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCcEEeccccccee
Confidence            99999996 589888875543 445566667788888877      46899999999   88889999999999874

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.75  E-value=1.3e-17  Score=121.46  Aligned_cols=141  Identities=18%  Similarity=0.240  Sum_probs=111.0

Q ss_pred             hhcCCcc-cceecccCceeEEEEEe-CCCcEEEEEeccCCCccc--------------HHHHHHHHHHHhcCCCCceeee
Q 040049           12 ATDHLNV-NIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGK--------------LDEFINKVVILSQINYRNVVKL   75 (167)
Q Consensus        12 ~~~~~~~-~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~--------------~~~~~~e~~~~~~l~h~~i~~l   75 (167)
                      ..++|.. .+.||+|+||.||++.. .+++.+|+|.+.......              ...+.+|+.+++.++|||++++
T Consensus         6 ~~~ry~~~~~~ig~G~~g~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~   85 (335)
T PTZ00024          6 ISERYIQKGAHLGEGTYGKVEKAYDTLTGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNEIKHENIMGL   85 (335)
T ss_pred             cccchhhhhhcccCCCceeEEEEEECCCCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHhCCCcceeee
Confidence            3456654 46799999999999984 478899999765432211              1246789999999999999999


Q ss_pred             eeeeecCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccc
Q 040049           76 LGCCLETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRK  148 (167)
Q Consensus        76 ~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~  148 (167)
                      ++++...+..++++||++ |+|.+.+..... ........+.+++.++.+      +|+|+++.|++   +.....++++
T Consensus        86 ~~~~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nil---l~~~~~~kl~  161 (335)
T PTZ00024         86 VDVYVEGDFINLVMDIMA-SDLKKVVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIF---INSKGICKIA  161 (335)
T ss_pred             eEEEecCCcEEEEEeccc-cCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeE---ECCCCCEEEC
Confidence            999999999999999997 489998876432 444555567777777766      57899999999   7888889999


Q ss_pred             ccchhhhh
Q 040049          149 KFEEEKWR  156 (167)
Q Consensus       149 df~~~~~~  156 (167)
                      |||.++..
T Consensus       162 dfg~~~~~  169 (335)
T PTZ00024        162 DFGLARRY  169 (335)
T ss_pred             Cccceeec
Confidence            99988743

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.74  E-value=1.8e-17  Score=119.71  Aligned_cols=133  Identities=19%  Similarity=0.175  Sum_probs=99.3

Q ss_pred             ceecccCceeEEEEEeC---CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA---DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~lv~e~~~~   94 (167)
                      ..||+|+||.||+|...   ++..+|+|.+....  ....+.+|+.+++.++|||++++++++..  +...++++||+++
T Consensus         7 ~~lG~G~~g~Vy~~~~~~~~~~~~~a~k~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~lv~e~~~~   84 (317)
T cd07867           7 CKVGRGTYGHVYKAKRKDGKDEKEYALKQIEGTG--ISMSACREIALLRELKHPNVIALQKVFLSHSDRKVWLLFDYAEH   84 (317)
T ss_pred             eEeccCCCeeEEEEEecCCCccceEEEEEecCCC--CcHHHHHHHHHHHhCCCCCeeeEEEEEeccCCCeEEEEEeeeCC
Confidence            57999999999999843   45789999875432  23467789999999999999999998854  4568899999865


Q ss_pred             CCHHHHHhhcC----------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh-hccCCccccccchhhh
Q 040049           95 GNLSDYLHEQN----------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL-LKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~----------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~-~~~~~~~l~df~~~~~  155 (167)
                       +|.+.+....          ......+..+.+++.++.+      +|+|+|++||++..- .....++++|||.++.
T Consensus        85 -~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~  161 (317)
T cd07867          85 -DLWHIIKFHRASKANKKPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARL  161 (317)
T ss_pred             -cHHHHHHhhhccccCCCCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceec
Confidence             8888775321          1223344556778888876      578999999982110 3446789999999874

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.74  E-value=1.9e-17  Score=116.96  Aligned_cols=138  Identities=18%  Similarity=0.203  Sum_probs=108.1

Q ss_pred             CCcccceecccCceeEEEEEeC--CCcEEEEEeccCCC----------cccHHHHHHHHHHHhc-CCCCceeeeeeeeec
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA--DERIVAVKKSKVVG----------KGKLDEFINKVVILSQ-INYRNVVKLLGCCLE   81 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~--~~~~~avk~~~~~~----------~~~~~~~~~e~~~~~~-l~h~~i~~l~~~~~~   81 (167)
                      +|++.+.||+|+||.||.+...  ++..+++|.+....          ......+..|+.++.. ++|||++++++++..
T Consensus         1 ~y~~~~~ig~G~~~~v~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~   80 (269)
T cd08528           1 EYAVLEHLGSGAFGCVYKVRKKNNGQNLLALKEINVHNPAFGKDKRERDKSIGDIVSEVTIIKEQLRHPNIVRYYKTFLE   80 (269)
T ss_pred             CchhhhhhcCCCCceEEEEEEcCCCCceeeeeEeeccccccccccccchHHHHHHHHHHHHHhhcCCCCCeeeEEeeEcc
Confidence            4778899999999999999854  46789999764321          1233456778887765 789999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhc---C--cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccc
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQ---N--EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~---~--~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                      .+..++++||+++++|.+++...   .  ......+..+.+++.++.+       +|+|+++.|++   +..+..++++|
T Consensus        81 ~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~nil---~~~~~~~~l~d  157 (269)
T cd08528          81 NDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNNIM---LGEDDKVTITD  157 (269)
T ss_pred             CCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHHEE---ECCCCcEEEec
Confidence            99999999999999999887542   1  1334556666777776665       46789999999   78888999999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.+..
T Consensus       158 fg~~~~  163 (269)
T cd08528         158 FGLAKQ  163 (269)
T ss_pred             ccceee
Confidence            998863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=99.74  E-value=5.8e-19  Score=122.49  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=107.5

Q ss_pred             hhcCCccc-ceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecC----Cc
Q 040049           12 ATDHLNVN-IVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLET----EV   84 (167)
Q Consensus        12 ~~~~~~~~-~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~----~~   84 (167)
                      .+++|.+. ++||-|-.|+|..|. ..+++.+|+|.+..     .....+|+++.-+. .||||++++++|...    .-
T Consensus        59 itedY~is~qvLG~GinGkV~~C~~k~T~ekfALKvL~D-----s~KARrEVeLHw~~s~h~~iV~IidVyeNs~~~rkc  133 (400)
T KOG0604|consen   59 ITEDYSISWQVLGAGINGKVVQCVHKRTQEKFALKVLLD-----SPKARREVELHWMASGHPHIVSIIDVYENSYQGRKC  133 (400)
T ss_pred             chhhheehhhhhccccCCceEEEEeccchhhhHHHHHhc-----CHHHHhHhhhhhhhcCCCceEEeehhhhhhccCcee
Confidence            56677766 579999999999998 56899999998753     24556788765555 699999999998543    45


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHh--hHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVK--DVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~--~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +.+|||.++||.|++.|++++. .++.  ....+.+|..++.|      .|||+|++|++...-..+...|++|||+|+-
T Consensus       134 LLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpENLLyt~t~~na~lKLtDfGFAK~  213 (400)
T KOG0604|consen  134 LLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPENLLYTTTSPNAPLKLTDFGFAKE  213 (400)
T ss_pred             eEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhheeeecCCCCcceEecccccccc
Confidence            7899999999999999998875 2222  22234566666666      4799999999966555667889999999994


Q ss_pred             h
Q 040049          156 R  156 (167)
Q Consensus       156 ~  156 (167)
                      .
T Consensus       214 t  214 (400)
T KOG0604|consen  214 T  214 (400)
T ss_pred             c
Confidence            3

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.74  E-value=1.5e-17  Score=118.25  Aligned_cols=136  Identities=24%  Similarity=0.291  Sum_probs=111.2

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      |++.+.||+|++|.||++.. .++..+++|.+....  ......+.+|+..++.++|||++++++++.+.+..++++||+
T Consensus         1 y~~~~~l~~g~~~~vy~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l~~~~iv~~~~~~~~~~~~~iv~e~~   80 (283)
T cd07835           1 YQKVEKIGEGTYGVVYKARDKLTGEIVALKKIRLETEDEGVPSTAIREISLLKELNHPNIVRLLDVVHSENKLYLVFEFL   80 (283)
T ss_pred             CchheEecCCCCeEEEEEEEcCCCCEEEEEEeecccccccchhHHHHHHHHHHhcCCCCccCHhheeccCCeEEEEEecc
Confidence            56778999999999999984 578999999875432  233456788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      + ++|.+++....   ......+..+.+++.++.+      +|+|+++.|++   +.++..++++|||.++.
T Consensus        81 ~-~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil---~~~~~~~~l~df~~~~~  148 (283)
T cd07835          81 D-LDLKKYMDSSPLTGLDPPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLL---IDREGALKLADFGLARA  148 (283)
T ss_pred             C-cCHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEE---EcCCCcEEEeecccccc
Confidence            5 58999887654   2445555667778877766      47899999999   77788999999998763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.74  E-value=2.4e-17  Score=119.27  Aligned_cols=138  Identities=24%  Similarity=0.299  Sum_probs=109.1

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +.|...+.||+|+||.||++.. .++..+++|.+....   ......+.+|+..++.++|||++++++++...+..++++
T Consensus        25 ~~f~~~~~lg~G~~~~v~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~  104 (317)
T cd06635          25 KLFTDLREIGHGSFGAVYFARDVRTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQRIKHPNSIEYKGCYLREHTAWLVM  104 (317)
T ss_pred             hhhhhhheeccCCCeEEEEEEEcCCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHhCCCCCEEEEEEEEeeCCeEEEEE
Confidence            3477888999999999999984 578899999875432   223456888999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++ ++.+.+.....  ........+.+++.++.+      +|+++++.|++   +..+..++++|||.+..
T Consensus       105 e~~~g-~l~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil---~~~~~~~kl~dfg~~~~  174 (317)
T cd06635         105 EYCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNIL---LTEPGQVKLADFGSASI  174 (317)
T ss_pred             eCCCC-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEE---ECCCCCEEEecCCCccc
Confidence            99975 78777764332  333344456677777766      57899999999   77788899999998663

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=9.6e-19  Score=139.09  Aligned_cols=140  Identities=21%  Similarity=0.244  Sum_probs=114.2

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeec---------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLE---------   81 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~---------   81 (167)
                      .++|+....||+|+||.|++++ .-+|+.+|+|++.... ........+|+.++.+++|||+++++..|..         
T Consensus       478 ~~DFEEL~lLGkGGFG~VvkVRNKlDGr~YAIKKIpl~~s~~~~skI~rEVk~LArLnHpNVVRYysAWVEs~~~~~~~e  557 (1351)
T KOG1035|consen  478 LNDFEELELLGKGGFGSVVKVRNKLDGREYAIKKIPLKASDKLYSKILREVKLLARLNHPNVVRYYSAWVESTAELTVLE  557 (1351)
T ss_pred             hhhhHHHHHhcCCCCceEEEEeecccchhhhhhhccCchHHHHHHHHHHHHHHHhhcCCcceeeeehhhhccCCcccccc
Confidence            3578888999999999999999 4589999999987653 3334568899999999999999999876600         


Q ss_pred             ----------------------------------------------C---------------------------------
Q 040049           82 ----------------------------------------------T---------------------------------   82 (167)
Q Consensus        82 ----------------------------------------------~---------------------------------   82 (167)
                                                                    .                                 
T Consensus       558 i~~~~~~~~sQs~s~~~~~~~~~q~t~~p~~~~~~~~~~~~dd~sss~~~~~~~~~~~~d~e~~d~dedg~~~S~tS~~e  637 (1351)
T KOG1035|consen  558 IVASDSESRSQSASKYNGVDIRYQPTSSPSLTLSELDSEDEDDKSSSYTTRKASYESSTDEENDDSDEDGRNLSNTSDSE  637 (1351)
T ss_pred             ccccchhhhcccCCCcccceeeeccCCCcccCcchhhccccCccccccccccccccccCCcccccccccccccccccccC
Confidence                                                          0                                 


Q ss_pred             -------------------------------CcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh----
Q 040049           83 -------------------------------EVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL----  125 (167)
Q Consensus        83 -------------------------------~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~----  125 (167)
                                                     -.+||-||||+..++.+.+.....  .....|..+.+|+.|++|+    
T Consensus       638 ~~~~~d~~~ess~s~~~~~n~~e~~~~~q~~~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~g  717 (1351)
T KOG1035|consen  638 GSVILDDTSESSESIPKTENSSEPMVPVQKPLILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQG  717 (1351)
T ss_pred             CccccCcchhhhhhccccCCccccccccccceEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCc
Confidence                                           014788899998666666665543  3678899999999999994    


Q ss_pred             --hhcccchhHHHHhhhccCCccccccchhhh
Q 040049          126 --KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       126 --h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                        |||+||.|||   ++....+||.|||+|..
T Consensus       718 iIHRDLKP~NIF---Ld~~~~VKIGDFGLAt~  746 (1351)
T KOG1035|consen  718 IIHRDLKPRNIF---LDSRNSVKIGDFGLATD  746 (1351)
T ss_pred             eeeccCCcceeE---EcCCCCeeecccccchh
Confidence              7999999999   88999999999999985

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.74  E-value=1.2e-17  Score=121.85  Aligned_cols=139  Identities=17%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----Cc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----EV   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~~   84 (167)
                      .++|.+.+.||+|+||.||++. ..++..+++|.+...  .......+.+|+.+++.++|||++++++++...     ..
T Consensus         4 ~~~y~~~~~lg~G~~~~vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~ni~~~~~~~~~~~~~~~~~   83 (337)
T cd07858           4 DTKYVPIKPIGRGAYGIVCSAKNSETNEKVAIKKIANAFDNRIDAKRTLREIKLLRHLDHENVIAIKDIMPPPHREAFND   83 (337)
T ss_pred             ccceeEEEEeccCCCeEEEEEEecCCCCeEEEEEecccccccchhHHHHHHHHHHHhcCCCCccchHHheecccccccCc
Confidence            4679999999999999999998 457899999987643  233345677899999999999999999987644     34


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+. ++|.+++..... .....+..+.+++.++.+      +|+++++.|++   +..+..++++|||+++.
T Consensus        84 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil---~~~~~~~kL~Dfg~~~~  157 (337)
T cd07858          84 VYIVYELMD-TDLHQIIRSSQTLSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLL---LNANCDLKICDFGLART  157 (337)
T ss_pred             EEEEEeCCC-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---EcCCCCEEECcCccccc
Confidence            799999996 589888876543 444555667778888876      57899999999   77788899999999874

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.74  E-value=4.8e-18  Score=129.76  Aligned_cols=140  Identities=15%  Similarity=0.127  Sum_probs=102.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeC--CCcEEEEEe--------------cc---CCCcccHHHHHHHHHHHhcCCCCce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA--DERIVAVKK--------------SK---VVGKGKLDEFINKVVILSQINYRNV   72 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~avk~--------------~~---~~~~~~~~~~~~e~~~~~~l~h~~i   72 (167)
                      ..++|.+.+.||+|+||.||+|...  .+...+.|.              +.   .........+.+|+.+++.++||||
T Consensus       146 ~~~~Y~ii~~LG~G~fG~Vyl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~Ei~il~~l~HpnI  225 (501)
T PHA03210        146 FLAHFRVIDDLPAGAFGKIFICALRASTEEAEARRGVNSTNQGKPKCERLIAKRVKAGSRAAIQLENEILALGRLNHENI  225 (501)
T ss_pred             hhhccEEEeEecCCCCcceEEEEEeccchhhhhhhccccccccchhhhhhHhHHhhcchHHHHHHHHHHHHHHhCCCCCc
Confidence            3568999999999999999998632  222222110              00   0112234567899999999999999


Q ss_pred             eeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcc------hHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh
Q 040049           73 VKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED------FVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL  140 (167)
Q Consensus        73 ~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~------~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~  140 (167)
                      +++++++...+..|++++++.+ +|.+++......      .......+.+++.++.|      +|+|+|+.||+   +.
T Consensus       226 v~l~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~~gIiHrDLKP~NIL---l~  301 (501)
T PHA03210        226 LKIEEILRSEANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHDKKLIHRDIKLENIF---LN  301 (501)
T ss_pred             CcEeEEEEECCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EC
Confidence            9999999999999999999855 788777643211      12233456677777777      57999999999   78


Q ss_pred             ccCCccccccchhhh
Q 040049          141 KGLAPKRKKFEEEKW  155 (167)
Q Consensus       141 ~~~~~~l~df~~~~~  155 (167)
                      .+..++|+|||.++.
T Consensus       302 ~~~~vkL~DFGla~~  316 (501)
T PHA03210        302 CDGKIVLGDFGTAMP  316 (501)
T ss_pred             CCCCEEEEeCCCcee
Confidence            888999999999874

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.74  E-value=2.5e-17  Score=115.79  Aligned_cols=133  Identities=17%  Similarity=0.135  Sum_probs=102.8

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHH-hcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVIL-SQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~-~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|++|.||+|.. .+++.+|+|.+.....   ........|...+ ...+|||++++++.+...+..++++||+++
T Consensus         2 ~~l~~g~~~~v~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~   81 (260)
T cd05611           2 KPISKGAFGSVYLAKKRSTGDYFAIKVLKKSDMIAKNQVTNVKAERAIMMIQGESPYVAKLYYSFQSKDYLYLVMEYLNG   81 (260)
T ss_pred             ccCCcCCCeeEEEEEecCCCCeEEEEEecchhhhHHHHHHHHHHHHHHHhhcCCCCCeeeeeeeEEcCCeEEEEEeccCC
Confidence            5689999999999984 5688999998754321   1122334444433 445899999999999999999999999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|.++++.... +....+..+.+++.++.+      +|+++++.||+   +.....++++|||.++.
T Consensus        82 ~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~~~~  146 (260)
T cd05611          82 GDCASLIKTLGGLPEDWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLL---IDQTGHLKLTDFGLSRN  146 (260)
T ss_pred             CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---ECCCCcEEEeeccccee
Confidence            999999986543 444555566778877776      57899999999   77788899999998763

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.74  E-value=2.4e-18  Score=131.13  Aligned_cols=135  Identities=21%  Similarity=0.248  Sum_probs=113.6

Q ss_pred             eecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHH
Q 040049           21 VLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSD   99 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~   99 (167)
                      ++|+|.+|+||-|++ .+....|+|.+...+....+.+..|+.+.+.++|.||+++.|.+..++++-|.||-+|||+|.+
T Consensus       582 VLGKGTYG~VYA~RD~~tqvrIaIKEIpekdsr~~QPLhEEIaLH~~LrHkNIVrYLGs~senGf~kIFMEqVPGGSLSs  661 (1226)
T KOG4279|consen  582 VLGKGTYGTVYAARDMDTQVRIAIKEIPEKDSREVQPLHEEIALHSTLRHKNIVRYLGSVSENGFFKIFMEQVPGGSLSS  661 (1226)
T ss_pred             EeecCceeEEEeeccccceeEEEeeecccccchhhccHHHHHHHHHHHhhHhHHHHhhccCCCCeEEEEeecCCCCcHHH
Confidence            699999999999994 4666789999988888888999999999999999999999999999999999999999999999


Q ss_pred             HHhhc-Cc---chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049          100 YLHEQ-NE---DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus       100 ~i~~~-~~---~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      +++.. ++   +....-.+-.||+.|+.|+      |||+|-+|+++.  .=.+.+||+|||-++.-.
T Consensus       662 LLrskWGPlKDNEstm~fYtkQILeGLkYLHen~IVHRDIKGDNVLvN--TySGvlKISDFGTsKRLA  727 (1226)
T KOG4279|consen  662 LLRSKWGPLKDNESTMNFYTKQILEGLKYLHENKIVHRDIKGDNVLVN--TYSGVLKISDFGTSKRLA  727 (1226)
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHhhhhhhcceeeccccCCcEEEe--eccceEEecccccchhhc
Confidence            99975 32   3344445678899999884      799999999832  224678999999887543

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.74  E-value=3e-17  Score=116.09  Aligned_cols=137  Identities=22%  Similarity=0.401  Sum_probs=106.0

Q ss_pred             CcccceecccCceeEEEEEeC----CCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC------
Q 040049           16 LNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE------   83 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~------   83 (167)
                      |.+.+.||+|+||.||++.+.    +++.+++|.+...  .....+.+.+|+.+++.++|||++++++++...+      
T Consensus         1 ~~~~~~ig~g~~g~v~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~   80 (273)
T cd05074           1 FTLGRMLGKGEFGSVREAQLKSEDGSFQKVAVKMLKADIFSSSDIEEFLREAACMKEFDHPNVIKLIGVSLRSRAKGRLP   80 (273)
T ss_pred             CcchhcccCCCCCCEEeeEeeccCCCceEEEEEEeccccCChHHHHHHHHHHHHHhcCCCCCcceEEEEEccCCCCCccc
Confidence            566788999999999999742    4688999987543  2334566889999999999999999999886432      


Q ss_pred             cceEEEecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      ..+++++|+++|+|.+++....       .+....+..+.+++.++++      +|+|+++.|++   +..+..++++||
T Consensus        81 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nil---i~~~~~~kl~df  157 (273)
T cd05074          81 IPMVILPFMKHGDLHTFLLMSRIGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCM---LNENMTVCVADF  157 (273)
T ss_pred             ceEEEEecCCCCcHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEE---EcCCCCEEECcc
Confidence            2468889999999988875321       1223345567778888877      57899999999   777888999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       158 g~~~~  162 (273)
T cd05074         158 GLSKK  162 (273)
T ss_pred             ccccc
Confidence            98874

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.74  E-value=2.8e-17  Score=120.11  Aligned_cols=146  Identities=17%  Similarity=0.172  Sum_probs=112.5

Q ss_pred             cHHHHHhh----hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeee
Q 040049            5 SAKELDKA----TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLG   77 (167)
Q Consensus         5 ~~~~~~~~----~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~   77 (167)
                      +.+++...    .++|.....||+|++|.||++.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++
T Consensus         2 ~~~~~~~~~~~~~~~y~~~~~ig~g~~g~v~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~niv~~~~   81 (342)
T cd07879           2 YREEVNKTVWELPERYTSLKQVGSGAYGSVCSAIDKRTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKHMQHENVIGLLD   81 (342)
T ss_pred             chhhhhhhhhccccceEEEEEeeecCCeEEEEEEeCCCCcEEEEEEecCccccccchhHHHHHHHHHHhcCCCCccchhh
Confidence            44455544    37899999999999999999984 57899999987543  2223456789999999999999999999


Q ss_pred             eeecCC------cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           78 CCLETE------VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        78 ~~~~~~------~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      ++....      ..++++||+.. +|.+... ........+..+.+++.++.+      +|+++++.||+   +..+..+
T Consensus        82 ~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~-~~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIl---l~~~~~~  156 (342)
T cd07879          82 VFTSAVSGDEFQDFYLVMPYMQT-DLQKIMG-HPLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLA---VNEDCEL  156 (342)
T ss_pred             eecccccCCCCceEEEEeccccc-CHHHHHc-CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCE
Confidence            986543      35899999865 7766543 223445555566777777766      57899999999   7888899


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +++|||.++.
T Consensus       157 kL~dfg~~~~  166 (342)
T cd07879         157 KILDFGLARH  166 (342)
T ss_pred             EEeeCCCCcC
Confidence            9999998874

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.74  E-value=4.3e-17  Score=115.88  Aligned_cols=131  Identities=14%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             eecccCceeEEEEEe-CCCcEEEEEeccCCCcc--c-HHHHHHHH---HHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           21 VLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG--K-LDEFINKV---VILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~--~-~~~~~~e~---~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      .||+|+||.||++.. .+++.+|+|.+......  . ......|.   ..+....||+++.+.+.+...+..++|+||++
T Consensus         1 ~ig~g~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (278)
T cd05606           1 IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKLSFILDLMN   80 (278)
T ss_pred             CcccCCCeEEEEEEEecCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeeecCCEEEEEEecCC
Confidence            479999999999984 57889999987543211  1 11223333   34444679999999999999999999999999


Q ss_pred             CCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           94 NGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        94 ~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |++|.+.+..... ........+.+++.++.++      |+|+++.|++   +..+..++++|||.+.
T Consensus        81 g~~L~~~l~~~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nil---i~~~~~~kl~dfg~~~  145 (278)
T cd05606          81 GGDLHYHLSQHGVFSEAEMRFYAAEIILGLEHMHNRFVVYRDLKPANIL---LDEHGHVRISDLGLAC  145 (278)
T ss_pred             CCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEE---ECCCCCEEEccCcCcc
Confidence            9999998876543 4455556677788888774      7899999999   7788889999999876

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.73  E-value=5.6e-19  Score=141.17  Aligned_cols=141  Identities=21%  Similarity=0.241  Sum_probs=119.0

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccC--CCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~--~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+-+.+....||.|.||.||.+. ..+|...|+|.+..  ........+.+|..++..+.|||+++++|+-...+..+|
T Consensus      1232 nV~~rWqrg~~Ig~G~fG~VYtavN~~tGellAvKEI~iq~~~~k~~~~i~eEm~vlE~lnHpNlV~YyGVEvHRekv~I 1311 (1509)
T KOG4645|consen 1232 NVTFRWQRGNFIGGGTFGKVYTAVNLDTGELLAVKEIKIQDSDHKTFKLIAEEMKVLEGLNHPNLVRYYGVEVHREKVYI 1311 (1509)
T ss_pred             cceeeeccccccCCcceeeeEEeecCCccchhhhhhhhcCccccccCcchHHHHHHHHhccCccccccCceeecHHHHHH
Confidence            334466677889999999999998 67899999996543  344455678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .||||++|+|.+.+...+. +......+-.|++.|+++      +|||+|+.||+   ++.++..|+.|||.|.
T Consensus      1312 FMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gIVHRDIK~aNI~---Ld~~g~iK~~DFGsa~ 1382 (1509)
T KOG4645|consen 1312 FMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGIVHRDIKPANIL---LDFNGLIKYGDFGSAV 1382 (1509)
T ss_pred             HHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCceecCCCcccee---eecCCcEEeeccccee
Confidence            9999999999999886543 455566667888889888      47999999999   8888899999999987

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.73  E-value=3e-17  Score=116.55  Aligned_cols=135  Identities=15%  Similarity=0.149  Sum_probs=106.8

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCC-CCceeeeeeeeecC--CcceEEEe
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQIN-YRNVVKLLGCCLET--EVPLLVYE   90 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~--~~~~lv~e   90 (167)
                      |.+.+.+|+|+||.||++.. .++..+++|.+.... ........+|+..+..+. |||++++++++.++  +..++++|
T Consensus         1 y~~~~~lg~g~~~~v~~~~~~~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~~~~lv~e   80 (282)
T cd07831           1 YKILGKIGEGTFSEVLKAQSRKTGKYYAIKCMKKHFKSLEQVNNLREIQALRRLSPHPNILRLIEVLFDRKTGRLALVFE   80 (282)
T ss_pred             CceEeeccccccceEEEEEEcCCCcEEEEEEehhccCCchhhhHHHHHHHHhhcCCCCCccceEEEEecCCCCcEEEEEe
Confidence            56788999999999999984 578899999876432 222234457888888885 99999999999887  88999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++ ++.+.+....  ......+..+.+++.++.+      +|+++++.|++   +.+ ..++++|||.++.
T Consensus        81 ~~~~-~l~~~l~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~---l~~-~~~kl~dfg~~~~  148 (282)
T cd07831          81 LMDM-NLYELIKGRKRPLPEKRVKSYMYQLLKSLDHMHRNGIFHRDIKPENIL---IKD-DILKLADFGSCRG  148 (282)
T ss_pred             cCCc-cHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEE---EcC-CCeEEEecccccc
Confidence            9975 8888887643  2445566667788888877      47899999999   666 8899999998863

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.73  E-value=1.1e-17  Score=117.98  Aligned_cols=133  Identities=26%  Similarity=0.349  Sum_probs=102.1

Q ss_pred             ceecccCceeEEEEEeCC-------CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGMLAD-------ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~-------~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.||+|+||.||++...+       +..+++|.+.... ......+.+|+.+++.++||||+++++++...+..++++||
T Consensus         1 ~~lg~g~~g~vy~~~~~~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~   80 (269)
T cd05044           1 NFLGSGAFGEVYEGTATDILGPGSGPIRVAVKTLRKGATDQEKKEFLKEAHLMSNFNHPNIVKLLGVCLLNEPQYIIMEL   80 (269)
T ss_pred             CccccccceeEEeeeecccccCcccceeehhhhhhcccchhhHHHHHHHHHHHHhcCCCCeeeEeeeecCCCCeEEEEec
Confidence            358999999999997421       2568888765332 23456788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-----Cccccccch
Q 040049           92 IPNGNLSDYLHEQNE--------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-----APKRKKFEE  152 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-----~~~l~df~~  152 (167)
                      +++++|.+++.....        ........+.+++.++.+      +|+|+++.|++   +..+.     .++++|||.
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil---~~~~~~~~~~~~~l~dfg~  157 (269)
T cd05044          81 MEGGDLLSYLRDARVERFGPPLLTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCL---VSEKGYDADRVVKIGDFGL  157 (269)
T ss_pred             cCCCcHHHHHHHhhhcccCCccccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEE---EecCCCCCCcceEECCccc
Confidence            999999999975321        122233345566666666      57899999999   55544     789999998


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       158 ~~~  160 (269)
T cd05044         158 ARD  160 (269)
T ss_pred             ccc
Confidence            863

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.73  E-value=1.9e-17  Score=118.09  Aligned_cols=138  Identities=17%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             CCcccceecccCceeEEEEEe----CCCcEEEEEeccCCC----cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcc
Q 040049           15 HLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVVG----KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~   85 (167)
                      +|.+.+.||+|++|.||++..    .++..+++|.+....    ......+.+|+.++..+ +||+++++++.+......
T Consensus         1 ~~~~~~~ig~G~~~~vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~~~~~~~   80 (288)
T cd05583           1 NFELLRVLGTGAYGKVFLVRKVGGHDAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAVRRCPFLVTLHYAFQTDTKL   80 (288)
T ss_pred             CceEEEEeccCCCceEEEEEEeccccCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhccCCcchhhhheeeecCCEE
Confidence            477889999999999999873    246789999775432    22345677899999999 599999999999988999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+||+++++|.+.+..... ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.++.
T Consensus        81 ~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil---~~~~~~~~l~dfg~~~~  154 (288)
T cd05583          81 HLILDYVNGGELFTHLYQREHFTESEVRVYIAEIVLALDHLHQLGIIYRDIKLENIL---LDSEGHVVLTDFGLSKE  154 (288)
T ss_pred             EEEEecCCCCcHHHHHhhcCCcCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeE---ECCCCCEEEEECccccc
Confidence            999999999999999876432 333444456677777766      56899999999   77778899999998763

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>PTZ00284 protein kinase; Provisional

Probab=99.73  E-value=1.9e-17  Score=125.61  Aligned_cols=141  Identities=13%  Similarity=0.112  Sum_probs=101.3

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC------CCCceeeeeeeeec
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI------NYRNVVKLLGCCLE   81 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l------~h~~i~~l~~~~~~   81 (167)
                      +....++|.+.+.||+|+||.||++.. .+++.||+|.++... ........|+.++..+      .|++++.+.+++..
T Consensus       124 ~~~~~~~y~i~~~lG~G~fg~V~~a~~~~~~~~vAvK~i~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~  202 (467)
T PTZ00284        124 IDVSTQRFKILSLLGEGTFGKVVEAWDRKRKEYCAVKIVRNVP-KYTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQN  202 (467)
T ss_pred             cccCCCcEEEEEEEEeccCEEEEEEEEcCCCeEEEEEEEecch-hhHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEc
Confidence            344567899999999999999999984 568899999885422 2223344555555554      34568888888876


Q ss_pred             C-CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccC---------
Q 040049           82 T-EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGL---------  143 (167)
Q Consensus        82 ~-~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~---------  143 (167)
                      . +..++|++++ +++|.+++.+... .....+..+.+++.++.|       +|+|+|++||+   +..+.         
T Consensus       203 ~~~~~~iv~~~~-g~~l~~~l~~~~~l~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NIL---l~~~~~~~~~~~~~  278 (467)
T PTZ00284        203 ETGHMCIVMPKY-GPCLLDWIMKHGPFSHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENIL---METSDTVVDPVTNR  278 (467)
T ss_pred             CCceEEEEEecc-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEE---EecCCccccccccc
Confidence            4 4678999988 6689888876543 444455566777777665       57899999999   44332         


Q ss_pred             -------Cccccccchhh
Q 040049          144 -------APKRKKFEEEK  154 (167)
Q Consensus       144 -------~~~l~df~~~~  154 (167)
                             .++|+|||.+.
T Consensus       279 ~~~~~~~~vkl~DfG~~~  296 (467)
T PTZ00284        279 ALPPDPCRVRICDLGGCC  296 (467)
T ss_pred             ccCCCCceEEECCCCccc
Confidence                   47999999765

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.73  E-value=8.8e-18  Score=122.77  Aligned_cols=141  Identities=18%  Similarity=0.163  Sum_probs=114.2

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc---
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV---   84 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~---   84 (167)
                      ...++|.+.+.||+|++|.||++.. .+++.+++|.+...  .......+.+|+.+++.++|||++++.+++...+.   
T Consensus        12 ~~~~~y~~~~~ig~g~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~   91 (343)
T cd07851          12 EVPDRYQNLSPVGSGAYGQVCSAFDTKTGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHMDHENVIGLLDVFTPASSLED   91 (343)
T ss_pred             cccCceEEEEEeccCCceEEEEEEECCCCcEEEEEecccccchhhHHHHHHHHHHHHHhccCCCHHHHHHHhhccccccc
Confidence            3457899999999999999999985 46889999987543  22234567789999999999999999988866554   


Q ss_pred             ---ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 ---PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ---~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                         .++++||+ +++|.+++..........+..+.+++.++.+      +|+++++.|++   +..+..++++|||++..
T Consensus        92 ~~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil---l~~~~~~kL~dfg~~~~  167 (343)
T cd07851          92 FQDVYLVTHLM-GADLNNIVKCQKLSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIA---VNEDCELKILDFGLARH  167 (343)
T ss_pred             cccEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---ECCCCCEEEcccccccc
Confidence               89999998 5699998886554556666777788888776      47899999999   77888899999998874

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.73  E-value=3.9e-17  Score=118.67  Aligned_cols=131  Identities=12%  Similarity=0.131  Sum_probs=104.1

Q ss_pred             ceeccc--CceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQG--GQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g--~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      ..||+|  +|+.||.+.. .+++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++...+..++++||+++
T Consensus         4 ~~ig~g~~~~~~v~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~h~niv~~~~~~~~~~~~~~v~e~~~~   83 (328)
T cd08226           4 VEIGRGFCNLTSVYLARHTPTGTLVTVRITDLENCTEEHLKALQNEVVLSHFFRHPNIMTSWTVFTTGSWLWVISPFMAY   83 (328)
T ss_pred             HHhCCcccCceeEEEEEEcCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCcceEeeeEecCCceEEEEecccC
Confidence            346666  8999999985 578999999876432  23346688899999999999999999999999999999999999


Q ss_pred             CCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           95 GNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        95 g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ++|.+++....   .+.......+.+++.++.+      +|+|+|+.|++   +......+++||+.+
T Consensus        84 ~~l~~~l~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nil---l~~~~~~~~~~~~~~  148 (328)
T cd08226          84 GSANSLLKTYFPEGMSEALIGNILFGALRGLNYLHQNGYIHRNIKASHIL---ISGDGLVSLSGLSHL  148 (328)
T ss_pred             CCHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EeCCCcEEEechHHH
Confidence            99999988643   2333444566778888877      57999999999   777777888887643

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.72  E-value=6.1e-18  Score=126.22  Aligned_cols=142  Identities=19%  Similarity=0.179  Sum_probs=115.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--------cccHHHHHHHHHHHhcCC---CCceeeeeeee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--------KGKLDEFINKVVILSQIN---YRNVVKLLGCC   79 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--------~~~~~~~~~e~~~~~~l~---h~~i~~l~~~~   79 (167)
                      +..+|.....+|+|+||+|+.|.+ +....|++|.+.+..        .......--|+.+|..++   |+||++++++|
T Consensus       559 k~s~yttlq~lG~GAyGkV~lai~K~n~~eVViK~I~KeRIL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfF  638 (772)
T KOG1152|consen  559 KFSDYTTLQPLGEGAYGKVNLAIHKENNYEVVIKMIFKERILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFF  638 (772)
T ss_pred             ccccceeeeeccccccceEEEeeecccceEEEeeehhhhhhhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhhee
Confidence            345789999999999999999995 457789999765421        112223456888888886   99999999999


Q ss_pred             ecCCcceEEEec-CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           80 LETEVPLLVYEY-IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        80 ~~~~~~~lv~e~-~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      ++++++|+++|- -+|.+|+++|..+.. .+........|++.++++      +|||+|.+|++   ++..+-+++.|||
T Consensus       639 Eddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFkQV~agi~hlh~~~ivhrdikdenvi---vd~~g~~klidfg  715 (772)
T KOG1152|consen  639 EDDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFKQVVAGIKHLHDQGIVHRDIKDENVI---VDSNGFVKLIDFG  715 (772)
T ss_pred             ecCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHHHHHhccccccccCceecccccccEE---EecCCeEEEeecc
Confidence            999999999985 467899999987654 566677778889888876      68999999999   8888999999999


Q ss_pred             hhhhh
Q 040049          152 EEKWR  156 (167)
Q Consensus       152 ~~~~~  156 (167)
                      -|.+.
T Consensus       716 saa~~  720 (772)
T KOG1152|consen  716 SAAYT  720 (772)
T ss_pred             chhhh
Confidence            88754

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.72  E-value=1.5e-17  Score=120.79  Aligned_cols=138  Identities=17%  Similarity=0.167  Sum_probs=112.8

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----cce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----VPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----~~~   86 (167)
                      +|.+.+.||+|++|.||++.. .++..+++|.+....  ....+.+.+|+..++.++|||++++.+++...+     ..|
T Consensus         1 ~y~i~~~ig~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~   80 (330)
T cd07834           1 RYELLKPIGSGAYGVVCSAVDKRTGRKVAIKKISNVFDDLIDAKRILREIKLLRHLRHENIIGLLDILRPPSPEDFNDVY   80 (330)
T ss_pred             CceeeeeecCCCCeEEEEEEeCCCCcEEEEEeeccccccchhhhhHHHHHHHHHhcCCcchhhhhhhhcccCcccccceE
Confidence            478889999999999999995 468899999876543  344567889999999999999999999987765     689


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +++||+++ +|.+.+..... .....+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+...
T Consensus        81 lv~e~~~~-~l~~~l~~~~~l~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nil---i~~~~~~~L~dfg~~~~~  153 (330)
T cd07834          81 IVTELMET-DLHKVIKSPQPLTDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNIL---VNSNCDLKICDFGLARGV  153 (330)
T ss_pred             EEecchhh-hHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEcccCceEee
Confidence            99999975 89888876532 444555567777777766      47899999999   888889999999988854

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.72  E-value=1.6e-17  Score=117.86  Aligned_cols=136  Identities=23%  Similarity=0.255  Sum_probs=112.6

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      |...+.||+|.+|.+|++.. .+++.+++|.+....  ....+.+..|+.+++.++|||++++++++...+..++++||+
T Consensus         1 y~~~~~ig~g~~~~vy~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~~~~~i~~~~~~~~~~~~~~~v~e~~   80 (282)
T cd07829           1 YEKLEKLGEGTYGVVYKARDKKTGEIVALKKIRLDNEEEGIPSTALREISLLKELKHPNIVKLLDVIHTERKLYLVFEYC   80 (282)
T ss_pred             CeeehcccccCcceEEEeeecCCCcEEEEEEeccccccccccHHHHHHHHHHHhcCCCCHHHHHhhhhcCCceEEEecCc
Confidence            55678899999999999994 468999999876542  334467788999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhc--CcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQ--NEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~--~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++ +|.+++...  .......+..+.+++.++.++      |+++++.|++   +..+..++++|||.++.
T Consensus        81 ~~-~l~~~i~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~---~~~~~~~~l~d~g~~~~  147 (282)
T cd07829          81 DM-DLKKYLDKRPGPLSPNLIKSIMYQLLRGLAYCHSHRILHRDLKPQNIL---INRDGVLKLADFGLARA  147 (282)
T ss_pred             Cc-CHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChheEE---EcCCCCEEEecCCcccc
Confidence            75 999999876  234555666677888888774      7899999999   77788999999998763

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.72  E-value=1.8e-17  Score=111.55  Aligned_cols=130  Identities=12%  Similarity=-0.034  Sum_probs=85.5

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcc--c------------------------HHHHHHHHHHHhcCCCCce
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG--K------------------------LDEFINKVVILSQINYRNV   72 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~--~------------------------~~~~~~e~~~~~~l~h~~i   72 (167)
                      ...||+|++|.||+|...+|+.+|+|.++.....  .                        ......|++.+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vAvKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~v   81 (190)
T cd05147           2 NGCISTGKEANVYHATTANGEERAIKIYKTSILVFKDRDRYVSGEFRFRHGYCKSNPRKMVRTWAEKEMRNLKRLVTAGI   81 (190)
T ss_pred             CCccccccceEEEEEECCCCCEEEEEEEEecccccccHHHhhcCCchhhccccCCCHHHHHHHHHHHHHHHHHHHHHCCC
Confidence            4679999999999999668999999987543211  1                        0122458888888877766


Q ss_pred             eeeeeeeecCCcceEEEecCCCCCHHHHHh-hcCcchHhhHHHHHHHHcCc-------hhhhhcccchhHHHHhhhccCC
Q 040049           73 VKLLGCCLETEVPLLVYEYIPNGNLSDYLH-EQNEDFVKDVGFILSRRGGI-------PRLKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        73 ~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~-~~~~~~~~~~~~~~~i~~~l-------~~~h~~~~~~~~~~~~~~~~~~  144 (167)
                      ........  ...++||||++|+++..... ....+.........+++.++       ..+|+|+||.|++   +. ...
T Consensus        82 ~~p~~~~~--~~~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIl---i~-~~~  155 (190)
T cd05147          82 PCPEPILL--KSHVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLL---YH-DGK  155 (190)
T ss_pred             CCCcEEEe--cCCEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---EE-CCc
Confidence            33222221  22389999999877755432 22223233333344443333       3478999999998   54 457


Q ss_pred             ccccccchhh
Q 040049          145 PKRKKFEEEK  154 (167)
Q Consensus       145 ~~l~df~~~~  154 (167)
                      ++++|||.|.
T Consensus       156 v~LiDFG~a~  165 (190)
T cd05147         156 LYIIDVSQSV  165 (190)
T ss_pred             EEEEEccccc
Confidence            8899999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.72  E-value=4.3e-17  Score=109.86  Aligned_cols=140  Identities=14%  Similarity=0.038  Sum_probs=92.9

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcc--c------------------------HHHHHHHHHHHhcCCCCce
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG--K------------------------LDEFINKVVILSQINYRNV   72 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~--~------------------------~~~~~~e~~~~~~l~h~~i   72 (167)
                      ...||+|++|.||+|...+|+.+|+|..+.....  .                        ...+..|.+.+..+.++++
T Consensus         2 ~~~ig~G~~~~Vy~a~~~~g~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i   81 (190)
T cd05145           2 NGCISTGKEANVYHARTGDGEELAVKIYKTSTLSFKDRDKYIEGDPRFRSRYSKSNPRKLVFAWAEKEFRNLKRLYEAGV   81 (190)
T ss_pred             CceeecCCCcEEEEEEcCCCCEEEEEEEEcCcceEeeHHHHhcCCcccccccccCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            4689999999999999668999999987654211  0                        1123578888888888887


Q ss_pred             eeeeeeeecCCcceEEEecCCCCCHHHH-HhhcCcchHhhHHHHHHHHcCch-------hhhhcccchhHHHHhhhccCC
Q 040049           73 VKLLGCCLETEVPLLVYEYIPNGNLSDY-LHEQNEDFVKDVGFILSRRGGIP-------RLKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        73 ~~l~~~~~~~~~~~lv~e~~~~g~L~~~-i~~~~~~~~~~~~~~~~i~~~l~-------~~h~~~~~~~~~~~~~~~~~~  144 (167)
                      .....+...  ..++||||++|+++... +...............+++.++.       .+|+|++|.|++   +. +..
T Consensus        82 ~~p~~~~~~--~~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIl---l~-~~~  155 (190)
T cd05145          82 PVPEPILLK--KNVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNIL---YH-DGK  155 (190)
T ss_pred             CCceEEEec--CCEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEE---EE-CCC
Confidence            544433322  24899999998755433 33322222233333445554443       468999999998   54 678


Q ss_pred             ccccccchhhhhh-----hhhhhhh
Q 040049          145 PKRKKFEEEKWRH-----TVLKRKE  164 (167)
Q Consensus       145 ~~l~df~~~~~~~-----~i~hr~~  164 (167)
                      ++++|||.+....     .+++||.
T Consensus       156 ~~liDFG~a~~~~~~~~~~~~~~~~  180 (190)
T cd05145         156 PYIIDVSQAVELDHPNALEFLRRDI  180 (190)
T ss_pred             EEEEEcccceecCCCCHHHHHHHHH
Confidence            8999999987431     4556664

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.72  E-value=9.4e-17  Score=115.99  Aligned_cols=137  Identities=26%  Similarity=0.303  Sum_probs=107.6

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .|...+.||+|++|.||++.. .++..+++|.+.....   .....+.+|+.+++.++|||++++++++.+.+..++++|
T Consensus        22 ~~~~~~~lg~g~~g~v~~~~~~~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  101 (313)
T cd06633          22 IFVGLHEIGHGSFGAVYFATNSHTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQLKHPNTIEYKGCYLKEHTAWLVME  101 (313)
T ss_pred             HhhcceeeccCCCeEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEEe
Confidence            356667899999999999984 4788999998754322   233567889999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++ ++.+.+.....  +.......+.+++.++.+      +|+++++.|++   +..+..++++|||.+..
T Consensus       102 ~~~~-~l~~~l~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nil---i~~~~~~kL~dfg~~~~  170 (313)
T cd06633         102 YCLG-SASDLLEVHKKPLQEVEIAAITHGALQGLAYLHSHNMIHRDIKAGNIL---LTEPGQVKLADFGSASK  170 (313)
T ss_pred             cCCC-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEE---ECCCCCEEEeecCCCcc
Confidence            9965 78777765432  333334445667777766      57899999999   77778899999998763

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.71  E-value=3.8e-18  Score=120.63  Aligned_cols=140  Identities=19%  Similarity=0.153  Sum_probs=120.4

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.++++||+|++++|..++ .++.+.+|+|.++..   +.++....+.|-.+.... +||.++.++.+|.+.+.++
T Consensus       248 ~l~df~ll~vigrgsyakvl~~~~~~t~qiyamkvvkkel~nddedidwvqtek~vfe~asn~pflvglhscfqtesrlf  327 (593)
T KOG0695|consen  248 GLQDFDLLRVIGRGSYAKVLLVRLKKTDQIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNNPFLVGLHSCFQTESRLF  327 (593)
T ss_pred             ccccceeeeeecCcchhhhhheehcccceeeehhhHHHHhcCCcccchhHHhhHHHHHhccCCCeEEehhhhhcccceEE
Confidence            34689999999999999999998 568999999987653   445667777888888877 5899999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.||++||+|.-.++.++. +.+....+...|..++.++|      +|+|.+|++   ++.....|++|||..+
T Consensus       328 fvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvl---ldaeghikltdygmck  399 (593)
T KOG0695|consen  328 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVL---LDAEGHIKLTDYGMCK  399 (593)
T ss_pred             EEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceE---EccCCceeecccchhh
Confidence            99999999999888887654 66677777888999999987      799999999   9999999999999866

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.71  E-value=8e-17  Score=116.08  Aligned_cols=139  Identities=22%  Similarity=0.282  Sum_probs=108.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+.|...+.||+|++|.||++.. .++..+++|.+...   .......+.+|+.+++.++|||++++.+++...+..++
T Consensus        13 ~~~~~~~~~~lg~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   92 (308)
T cd06634          13 PEKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWL   92 (308)
T ss_pred             cHHHHHHHHheeeCCCEEEEEEEEcCCCcEEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCcccEEEEEEcCCeeEE
Confidence            345578888999999999999984 46788999987532   22334567889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+||+.+ ++.+.+.....  ........+.+++.++.+      +|+|+++.|++   +..+..++++|||.+.
T Consensus        93 v~e~~~~-~l~~~~~~~~~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil---~~~~~~~kl~dfg~~~  163 (308)
T cd06634          93 VMEYCLG-SASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL---LSEPGLVKLGDFGSAS  163 (308)
T ss_pred             EEEccCC-CHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEE---ECCCCcEEECCcccce
Confidence            9999974 88777754332  233334445667777666      57899999999   7778889999999876

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.71  E-value=6.3e-18  Score=130.48  Aligned_cols=136  Identities=23%  Similarity=0.330  Sum_probs=111.8

Q ss_pred             cccceecccCceeEEEEEe-CCC----cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           17 NVNIVLGQGGQGTVHKGML-ADE----RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~-~~~----~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...++||+|+||+||+|.+ ..|    .+||+|.+... ..+....++.|+-.|..++|||++++++++..+. +.||++
T Consensus       699 kk~kvLGsgAfGtV~kGiw~Pege~vKipVaiKvl~~~t~~~~s~e~LdeAl~masldHpnl~RLLgvc~~s~-~qlvtq  777 (1177)
T KOG1025|consen  699 KKDKVLGSGAFGTVYKGIWIPEGENVKIPVAIKVLIEFTSPKASIELLDEALRMASLDHPNLLRLLGVCMLST-LQLVTQ  777 (1177)
T ss_pred             hhhceeccccceeEEeeeEecCCceecceeEEEEeeccCCchhhHHHHHHHHHHhcCCCchHHHHhhhcccch-HHHHHH
Confidence            4457899999999999984 444    46788876543 4555678999999999999999999999996654 778999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      |+|.|+|.++++..+.  +...-.....||+.|+.|      +|||+..-|++   +-+-..+|++|||+|+..
T Consensus       778 ~mP~G~LlDyvr~hr~~igsq~lLnw~~QIAkgM~YLe~qrlVHrdLaaRNVL---VksP~hvkitdfgla~ll  848 (1177)
T KOG1025|consen  778 LMPLGCLLDYVREHRDNIGSQDLLNWCYQIAKGMKYLEEQRLVHRDLAARNVL---VKSPNHVKITDFGLAKLL  848 (1177)
T ss_pred             hcccchHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhhee---ecCCCeEEEEecchhhcc
Confidence            9999999999998654  455566678899999998      58999999998   556678899999999853

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.71  E-value=5.2e-17  Score=115.29  Aligned_cols=136  Identities=21%  Similarity=0.239  Sum_probs=110.9

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      |.+.+.||+|++|.||++.. .+++.+++|.+.....  .....+.+|+.+++.++||+++++++.+..++..++++||+
T Consensus         1 y~~~~~i~~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~~~~i~~~~~~~~~~~~~~~v~e~~   80 (283)
T cd05118           1 YQKLGKIGEGTYGVVYKARDKLTGEIVAIKKIKLRFESEGIPKTALREIKLLKELNHPNIIKLLDVFRHKGDLYLVFEFM   80 (283)
T ss_pred             CccceeeecCCCceEEEEEcCCCCcEEEEEEeccccccchhHHHHHHHHHHHHHhcCCCcchHHHhhccCCCEEEEEecc
Confidence            56778999999999999984 4788899998754422  24567888999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++ ++.+.+....  ......+..+.+++.++.+      +|+|+++.|++   +..+..++++|||.+..
T Consensus        81 ~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nil---i~~~~~~~l~df~~~~~  147 (283)
T cd05118          81 DT-DLYKLIKDRQRGLPESLIKSYLYQLLQGLAFCHSHGILHRDLKPENLL---INTEGVLKLADFGLARS  147 (283)
T ss_pred             CC-CHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEE---ECCCCcEEEeeeeeeEe
Confidence            76 8888887643  2444555667778877776      47899999999   77888899999998763

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.71  E-value=7.4e-17  Score=116.02  Aligned_cols=140  Identities=24%  Similarity=0.241  Sum_probs=109.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETE-----   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----   83 (167)
                      ..++|.+.+.||+|++|.||++.. .+++.+++|.+.....  .......+|+.+++.++||||+++++++....     
T Consensus         6 ~~~~y~~~~~lg~g~~~~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   85 (311)
T cd07866           6 KLRDYEILGKLGEGTFGEVYKARQIKTGRVVALKKILMHNEKDGFPITALREIKILKKLKHPNVVPLIDMAVERPDKSKR   85 (311)
T ss_pred             ccccEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEEeccCCCCcchhHHHHHHHHHhcCCCCccchhhheecccccccc
Confidence            367899999999999999999984 5788999998754322  22345678999999999999999999875433     


Q ss_pred             ---cceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           84 ---VPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        84 ---~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                         .+++++||+.+ ++...+....  .........+.+++.++.+      +|+|+++.|++   +.++..++++|||+
T Consensus        86 ~~~~~~lv~~~~~~-~l~~~~~~~~~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil---~~~~~~~~l~dfg~  161 (311)
T cd07866          86 KRGSVYMVTPYMDH-DLSGLLENPSVKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANIL---IDNQGILKIADFGL  161 (311)
T ss_pred             cCceEEEEEecCCc-CHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCCEEECcCcc
Confidence               46899999976 7777766533  2344455556777777776      47899999999   88888999999998


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       162 ~~~  164 (311)
T cd07866         162 ARP  164 (311)
T ss_pred             chh
Confidence            874

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.70  E-value=9.4e-17  Score=114.47  Aligned_cols=138  Identities=17%  Similarity=0.150  Sum_probs=104.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|...+.||+|+||.||++.. .+++.+++|.+.... ......+.+|+..+..+. |||++++++++...+..++++|
T Consensus         4 ~~~~~~~~lg~G~~g~vy~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~~~~~~iv~~~~~~~~~~~~~~~~e   83 (288)
T cd06616           4 EDLKDLGEIGRGAFGTVNKMLHKPSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRSSDCPYIVKFYGALFREGDCWICME   83 (288)
T ss_pred             HHhHHHHHhCCCCceEEEEEEECCCCCEEEEEEehhccChHHHHHHHHHHHHHHHhcCCCCEeeeeeEEecCCcEEEEEe
Confidence            4566678899999999999984 578999999876432 234456788999999986 9999999999988889999999


Q ss_pred             cCCCCCHHHHHh---hc---CcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLH---EQ---NEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~---~~---~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+.. ++.++..   ..   ..+.........+++.++.+       +|+|+++.|++   +.....++++|||.++.
T Consensus        84 ~~~~-~l~~l~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil---~~~~~~~kl~dfg~~~~  157 (288)
T cd06616          84 LMDI-SLDKFYKYVYEVLKSVIPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNIL---LDRNGNIKLCDFGISGQ  157 (288)
T ss_pred             cccC-CHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEE---EccCCcEEEeecchhHH
Confidence            9865 6555432   11   11333334445666666654       57899999999   77778899999998863

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.70  E-value=5.8e-17  Score=115.17  Aligned_cols=136  Identities=23%  Similarity=0.213  Sum_probs=109.0

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      |.+.+.||+|++|.||+|.. .+++.+++|.+..... .......+|+..+..++ |||++++++++..++..++++||+
T Consensus         1 y~~~~~ig~g~~g~v~~~~~~~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~e~~   80 (283)
T cd07830           1 YKVIKQLGDGTFGSVYLARNKETGELVAIKKMKKKFYSWEECMNLREVKSLRKLNEHPNIVKLKEVFRENDELYFVFEYM   80 (283)
T ss_pred             CeeheeeccCCceEEEEEEECCCCcEEEEEEehhhccchhHHHHHHHHHHHHhccCCCCchhHHHHhhcCCcEEEEEecC
Confidence            56778999999999999995 4678899998754322 22234567889999998 999999999999999999999999


Q ss_pred             CCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       +|+|.+.+....   .........+.+++.++.+      +|+|+++.|++   +.....++++|||.+..
T Consensus        81 -~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~---i~~~~~~~l~d~~~~~~  148 (283)
T cd07830          81 -EGNLYQLMKDRKGKPFSESVIRSIIYQILQGLAHIHKHGFFHRDLKPENLL---VSGPEVVKIADFGLARE  148 (283)
T ss_pred             -CCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEE---EcCCCCEEEeeccccee
Confidence             779998887654   2444555566777777766      57899999999   88889999999998863

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.70  E-value=1.4e-16  Score=115.90  Aligned_cols=137  Identities=20%  Similarity=0.173  Sum_probs=106.1

Q ss_pred             CCcccceecccCceeEEEEEe-CC--CcEEEEEeccCC--CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecC----Cc
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-AD--ERIVAVKKSKVV--GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLET----EV   84 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~--~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~----~~   84 (167)
                      +|.+.+.||+|+||.||++.. .+  +..+|+|.+...  .......+.+|+.+++.+ +||||+++++.+...    ..
T Consensus         1 ~y~~~~~lg~G~~g~vy~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~~~~~~   80 (332)
T cd07857           1 RYELIKELGQGAYGIVCSARNAETSEEETVAIKKITNVFSKKILAKRALRELKLLRHFRGHKNITCLYDMDIVFPGNFNE   80 (332)
T ss_pred             CceEEEEccccCCeEEEEEEeCCCCcCceEEEEEeccccccchhHHHHHHHHHHHHHhcCCCChheeeeeeeeccccCCc
Confidence            477889999999999999984 34  778999987543  222345678899999998 599999999875432    45


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+++++++. ++|.+.+..... ........+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        81 ~~~~~e~~~-~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nil---i~~~~~~kl~Dfg~a~~  154 (332)
T cd07857          81 LYLYEELME-ADLHQIIRSGQPLTDAHFQSFIYQILCGLKYIHSANVLHRDLKPGNLL---VNADCELKICDFGLARG  154 (332)
T ss_pred             EEEEEeccc-CCHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeE---EcCCCCEEeCcCCCcee
Confidence            688888886 589998875443 445555667778888776      57899999999   78888999999998863

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.70  E-value=7.6e-17  Score=124.93  Aligned_cols=145  Identities=19%  Similarity=0.248  Sum_probs=113.7

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec--
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE--   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~--   81 (167)
                      ++.+...++-+.+.+.+|.|.+|.||+++ ..+++..|+|+....... -+....|.++++.. .|||++.+++++.-  
T Consensus        11 ~~~lpdp~d~~ei~evig~Gtygkv~k~k~~~~~~~aa~kI~~~~~d~-deEiE~eynil~~~~~hpnv~~fyg~~~k~~   89 (953)
T KOG0587|consen   11 LSSLPDPADIFEIIEVIGNGTYGKVYKGRHVKTGQLAAIKIMDPTEDE-EEEIELEYNMLKKYSHHPNVATFYGAFIKKD   89 (953)
T ss_pred             hhhCCCCCCccEEEEEEeeccceeEEEEeeeecCceeeeEeecCCccc-cHHHHHHHHHHHhccCCCCcceEEEEEEEec
Confidence            34445567788999999999999999998 678899999987654332 25566777888887 59999999999853  


Q ss_pred             ---CCcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccc
Q 040049           82 ---TEVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        82 ---~~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                         .+.+|+|||||.+||..+++++...   .+......+..++.|+.+      +|+|.|-.||+   +..+..+|++|
T Consensus        90 ~~~~DqLWLVMEfC~gGSVTDLVKn~~g~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiL---LT~e~~VKLvD  166 (953)
T KOG0587|consen   90 PGNGDQLWLVMEFCGGGSVTDLVKNTKGNRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVL---LTENAEVKLVD  166 (953)
T ss_pred             CCCCCeEEEEeeccCCccHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEE---EeccCcEEEee
Confidence               4679999999999999999997652   222223334556667766      57899999999   99999999999


Q ss_pred             cchhh
Q 040049          150 FEEEK  154 (167)
Q Consensus       150 f~~~~  154 (167)
                      ||.+.
T Consensus       167 FGvSa  171 (953)
T KOG0587|consen  167 FGVSA  171 (953)
T ss_pred             eeeee
Confidence            99754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.70  E-value=1.5e-16  Score=129.90  Aligned_cols=129  Identities=21%  Similarity=0.278  Sum_probs=101.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      ..+.....||+|+||.||+|.. .++..+|+|.+.......    ..|+..++.++||||+++++++.+.+..++||||+
T Consensus       690 ~~~~~~~~ig~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~----~~~~~~l~~l~HpnIv~~~~~~~~~~~~~lv~Ey~  765 (968)
T PLN00113        690 SSLKEENVISRGKKGASYKGKSIKNGMQFVVKEINDVNSIP----SSEIADMGKLQHPNIVKLIGLCRSEKGAYLIHEYI  765 (968)
T ss_pred             hhCCcccEEccCCCeeEEEEEECCCCcEEEEEEccCCcccc----HHHHHHHhhCCCCCcceEEEEEEcCCCCEEEEeCC
Confidence            4566678899999999999985 578999999876433222    24578899999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhh---------hcccchhHHHHhhhccCCccccccch
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLK---------RKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h---------~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ++|+|.++++.  ..+......+.+++.|+.|+|         +|+|+.|++   ++.+..+++ .++.
T Consensus       766 ~~g~L~~~l~~--l~~~~~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil---~~~~~~~~~-~~~~  828 (968)
T PLN00113        766 EGKNLSEVLRN--LSWERRRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKII---IDGKDEPHL-RLSL  828 (968)
T ss_pred             CCCcHHHHHhc--CCHHHHHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEE---ECCCCceEE-Eecc
Confidence            99999999974  234445556777888887755         799999998   666655555 3443

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.70  E-value=4.5e-17  Score=126.72  Aligned_cols=141  Identities=22%  Similarity=0.361  Sum_probs=117.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC----C----CcEEEEEeccCC-CcccHHHHHHHHHHHhcCC-CCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA----D----ERIVAVKKSKVV-GKGKLDEFINKVVILSQIN-YRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~----~----~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~   80 (167)
                      ...++..+.+.+|+|.||.|+++...    .    ...||+|..+.. ...+.+.+..|+.+|+.+. |||++.+.|++.
T Consensus       293 ~~~~~l~~~~~lg~g~fG~v~~~~~~~~~~~~~~~~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~g~H~niv~llG~~t  372 (609)
T KOG0200|consen  293 IPRENLKLGKYLGEGAFGQVVKALLFGLSKALLSIYVTVAVKMLKENASSSEKKDLMSELNVLKELGKHPNIVNLLGACT  372 (609)
T ss_pred             echhhccccceeecccccceEeEEEeecccccccceEEEEEEecccccCcHHHHHHHHHHHHHHHhcCCcchhhheeeec
Confidence            34445566679999999999999721    1    356899987644 3456678999999999985 999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      .++.++++.||+..|+|.++++..+                 ......+....||+.|+.|      +|||+..-|++  
T Consensus       373 ~~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVL--  450 (609)
T KOG0200|consen  373 QDGPLYVIVEYAEHGDLLEFLRKKRVTESIDGSGVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVL--  450 (609)
T ss_pred             cCCceEEEEEeccCCcHHHHHHhccccccccccCCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEE--
Confidence            9999999999999999999999877                 2333455667889999888      69999999999  


Q ss_pred             hhhccCCccccccchhh
Q 040049          138 QLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~  154 (167)
                       +.++..++++|||+|+
T Consensus       451 -i~~~~~~kIaDFGlar  466 (609)
T KOG0200|consen  451 -ITKNKVIKIADFGLAR  466 (609)
T ss_pred             -ecCCCEEEEcccccee
Confidence             8888999999999999

>PRK10345 hypothetical protein; Provisional

Probab=99.70  E-value=1.1e-16  Score=108.89  Aligned_cols=133  Identities=14%  Similarity=0.184  Sum_probs=92.8

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-----CCCceeeeeeeeecCC---cce-EE
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-----NYRNVVKLLGCCLETE---VPL-LV   88 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-----~h~~i~~l~~~~~~~~---~~~-lv   88 (167)
                      -...||+|+++.||. ...++.. ++|.+........+.+.+|+..++.+     .||||+++++++.++.   .++ +|
T Consensus         6 ~~~~LG~G~~~~Vy~-hp~~~~k-~IKv~~~~~~~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I   83 (210)
T PRK10345          6 EQSPLGTGRHRKCYA-HPEDAQR-CIKIVYHRGDGGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVI   83 (210)
T ss_pred             CcceecCCCceEEEE-CCCCcCe-EEEEEeccccchHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEE
Confidence            346899999999996 2223444 68887655444567789999999998     5799999999998874   434 78


Q ss_pred             Eec--CCCCCHHHHHhhcCcchHhhHHHHHHHHcCc-------hhhhhcccchhHHHHhhh-ccCCccccc-cchhh
Q 040049           89 YEY--IPNGNLSDYLHEQNEDFVKDVGFILSRRGGI-------PRLKRKKKKNKIWKQQLL-KGLAPKRKK-FEEEK  154 (167)
Q Consensus        89 ~e~--~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l-------~~~h~~~~~~~~~~~~~~-~~~~~~l~d-f~~~~  154 (167)
                      +||  +++|+|.+++++....  .....+.+++.++       ..+|+|+||+||++.... .+..++|+| ||.+.
T Consensus        84 ~e~~G~~~~tL~~~l~~~~~~--e~~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~~~  158 (210)
T PRK10345         84 ADFDGKPSITLTEFAEQCRYE--EDVAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGEST  158 (210)
T ss_pred             ecCCCCcchhHHHHHHccccc--HhHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCCcc
Confidence            999  6679999999764322  2223334444343       347899999999943222 234788999 55443

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.70  E-value=6.6e-17  Score=116.64  Aligned_cols=133  Identities=14%  Similarity=0.080  Sum_probs=103.5

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCC
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +.+.+|.|+++.++++. .++..+|+|.+...  .......+.+|+..++.++||||+++++++..++..++++||+++|
T Consensus         6 i~~~~~~~~~v~~~~~~-~~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l~h~~i~~~~~~~~~~~~~~~~~e~~~~~   84 (314)
T cd08216           6 IGKCFEDLMIVHLAKHK-PTNTLVAVKKINLDSCSKEDLKLLQQEIITSRQLQHPNILPYVTSFIVDSELYVVSPLMAYG   84 (314)
T ss_pred             hhHhhcCCceEEEEEec-CCCCEEEEEEEeccccchhHHHHHHHHHHHHHhcCCcchhhhhheeecCCeEEEEEeccCCC
Confidence            34445555554444444 37899999987643  3445567899999999999999999999999999999999999999


Q ss_pred             CHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           96 NLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        96 ~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|.+++....   .+.......+.+++.++.+      +|+|+++.|++   +..+..++++||+.+.
T Consensus        85 ~l~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nil---i~~~~~~kl~d~~~~~  149 (314)
T cd08216          85 SCEDLLKTHFPEGLPELAIAFILKDVLNALDYIHSKGFIHRSVKASHIL---LSGDGKVVLSGLRYSV  149 (314)
T ss_pred             CHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCcceEE---EecCCceEEecCccce
Confidence            9999988642   2334444556788888877      46899999999   7777889999999765

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.70  E-value=6.8e-17  Score=112.79  Aligned_cols=131  Identities=24%  Similarity=0.189  Sum_probs=108.5

Q ss_pred             ecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           22 LGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        22 ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ||+|++|.+|.+.. .+++.+++|.+.....   .....+..|+.+++.++|||++++++.+...+..++++|++++++|
T Consensus         1 lg~G~~~~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v~e~~~~~~L   80 (250)
T cd05123           1 LGKGSFGKVLLVRKKDTGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRINHPFIVKLHYAFQTEEKLYLVLEYAPGGEL   80 (250)
T ss_pred             CCCCCceEEEEEEECCCCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHcCCCcHHHHHHHeecCCeeEEEEecCCCCcH
Confidence            68999999999985 4688999998754322   2445788899999999999999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+.+..... +....+..+.+++.++.+      +|+++++.|++   +.....++++|||.+..
T Consensus        81 ~~~l~~~~~l~~~~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~---~~~~~~~~l~d~~~~~~  142 (250)
T cd05123          81 FSHLSKEGRFSEERARFYAAEIVLALEYLHSLGIIYRDLKPENIL---LDADGHIKLTDFGLAKE  142 (250)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcceEE---EcCCCcEEEeecCccee
Confidence            999987643 555566667778888777      47899999999   77788899999998763

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.70  E-value=2.6e-18  Score=129.83  Aligned_cols=148  Identities=21%  Similarity=0.230  Sum_probs=121.8

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      -.++|.++..+|+|.+|.||+++ ..+++..|+|.++.....+....++|+-+++..+||||+.+++.+...+.+|+.||
T Consensus        13 P~ddyellqrvgsgTygdvyKaRd~~s~elaavkvVkLep~dd~~~iqqei~~~~dc~h~nivay~gsylr~dklwicME   92 (829)
T KOG0576|consen   13 PQDDYELLQRVGSGTYGDVYKARDKRSGELAAVKVVKLEPGDDFSGIQQEIGMLRDCRHPNIVAYFGSYLRRDKLWICME   92 (829)
T ss_pred             CccchhheeeecCCcccchhhhcccccCchhhheeeeccCCccccccccceeeeecCCCcChHHHHhhhhhhcCcEEEEE
Confidence            44789999999999999999999 45789999999988877888888999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhH-HHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh-hhhhhhhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDV-GFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK-WRHTVLKR  162 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~-~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~-~~~~i~hr  162 (167)
                      ||-+|+|.+.-+-.+.-.+... ........++.|      +|||+|-.||+   +.....+++.|||-+. ....|..|
T Consensus        93 ycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanil---ltd~gDvklaDfgvsaqitati~Kr  169 (829)
T KOG0576|consen   93 YCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANIL---LTDEGDVKLADFGVSAQITATIAKR  169 (829)
T ss_pred             ecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCccccccccccee---ecccCceeecccCchhhhhhhhhhh
Confidence            9999999887665554323222 234555667766      67999999999   8889999999999644 44455554

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.70  E-value=8e-17  Score=122.17  Aligned_cols=141  Identities=17%  Similarity=0.233  Sum_probs=99.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-----------------CCCcEEEEEeccCCCcccHH--------------HHHHH
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-----------------ADERIVAVKKSKVVGKGKLD--------------EFINK   60 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-----------------~~~~~~avk~~~~~~~~~~~--------------~~~~e   60 (167)
                      ..++|.+.++||+|+||.||+|..                 ..++.||+|.+........+              ....|
T Consensus       143 ~~d~F~i~~~LG~GgFG~VYkG~~~~~~~~~v~~~~~~~~~~~~r~VAVK~l~~~~~~~~~~fl~e~~~~~~~~e~~~vE  222 (507)
T PLN03224        143 SSDDFQLRDKLGGGNFGITFEGLRLQADDQGVTQRSKLTAEQKKRRVVLKRVNMDRQGVRQDFLKTGTLAKGSAETGMVE  222 (507)
T ss_pred             cccCceEeeEeecCCCeEEEEEEecccccchhhhhccccccccCceEEEEEecccchhhHHHHHhhhhhhhcccchhHHH
Confidence            467999999999999999999863                 13467999987644322222              23346


Q ss_pred             HHHHhcCCCCce-----eeeeeeeec--------CCcceEEEecCCCCCHHHHHhhcCcc--------------------
Q 040049           61 VVILSQINYRNV-----VKLLGCCLE--------TEVPLLVYEYIPNGNLSDYLHEQNED--------------------  107 (167)
Q Consensus        61 ~~~~~~l~h~~i-----~~l~~~~~~--------~~~~~lv~e~~~~g~L~~~i~~~~~~--------------------  107 (167)
                      +..+..++|.++     +.+.++|..        ++..++||||+++++|.+++......                    
T Consensus       223 ~~~l~~l~~~~l~~~~~~~~lg~~~~~~~~g~~~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~  302 (507)
T PLN03224        223 AYMCAKIKRNPIAAASCAEYLGYFTSNTADGAFTKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMP  302 (507)
T ss_pred             HHHHHHhhcccchhhhhhhhhhhcccccccccccCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcc
Confidence            666666665544     566666643        35689999999999999998753210                    


Q ss_pred             -----hHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          108 -----FVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       108 -----~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                           ....+..+.+++.++.+      +|+|+|+.|++   +..+..++++|||.+..
T Consensus       303 ~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDLKp~NIL---l~~~~~~kL~DFGla~~  358 (507)
T PLN03224        303 QDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDIKPENLL---VTVDGQVKIIDFGAAVD  358 (507)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCchHhEE---ECCCCcEEEEeCcCccc
Confidence                 11222334556666666      57999999999   77788899999999863

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.69  E-value=7.3e-17  Score=113.40  Aligned_cols=137  Identities=20%  Similarity=0.156  Sum_probs=102.9

Q ss_pred             CCcccceecccCceeEEEEEeC-CCcEEEEEeccC---C--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKV---V--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~---~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +|.+.+.||+|+||.||++... .+...++|..+.   .  ..........|+.++..++|||++++++++.+.+..+++
T Consensus         1 ~y~i~~~ig~g~~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   80 (260)
T cd08222           1 RYILQQRLGKGSFGTVYLVKDKKAVAEERLKVLKEIPVGELNPNETVQANQEAQLLSKLDHPAIVKFHASFLERDAFCII   80 (260)
T ss_pred             CceeeeeecCCCCceEEEEEecCCCCcceEEEeccccccccCcchHHHHHHHHHHHHhCCCCcHHHHHHHHhcCCceEEE
Confidence            4788899999999999999843 344444444322   1  223344566788999999999999999999988899999


Q ss_pred             EecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++....     ......+....+++.++.+      +|+++++.|++   +. +..++++|||.++.
T Consensus        81 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nil---i~-~~~~~l~d~g~~~~  154 (260)
T cd08222          81 TEYCEGRDLDCKLEELKHTGKTLSENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIF---LK-NNLLKIGDFGVSRL  154 (260)
T ss_pred             EEeCCCCCHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHcCccccCCChhheE---ee-cCCEeecccCceee
Confidence            99999999999887421     1334445556677777776      47899999998   44 35589999998763

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.69  E-value=2.5e-16  Score=112.01  Aligned_cols=136  Identities=24%  Similarity=0.281  Sum_probs=106.0

Q ss_pred             CcccceecccCceeEEEEEeC-CCcEEEEEeccCCCc--ccHHHHHHHHHHHhcC---CCCceeeeeeeeecCCc-----
Q 040049           16 LNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGK--GKLDEFINKVVILSQI---NYRNVVKLLGCCLETEV-----   84 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~~~~~-----   84 (167)
                      |.+.+.||+|++|.||++... ++..+++|.+.....  .....+.+|+.++..+   .|||++++++++...+.     
T Consensus         1 y~~~~~l~~g~~~~v~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~   80 (287)
T cd07838           1 YEELAEIGEGAYGTVYKARDLNTGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELK   80 (287)
T ss_pred             CeEEEEecccCceEEEEEEECCCCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCce
Confidence            567889999999999999964 588999998764322  2234556677666554   69999999999988776     


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++|++++ +|.+++.....   +....+..+.+++.++.+      +|+++++.|++   +..+..++++|||++..
T Consensus        81 ~~l~~e~~~~-~l~~~l~~~~~~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nil---i~~~~~~~l~dfg~~~~  156 (287)
T cd07838          81 LTLVFEHVDQ-DLATYLSKCPKPGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNIL---VTSDGQVKIADFGLARI  156 (287)
T ss_pred             eEEEehhccc-CHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEE---EccCCCEEEeccCccee
Confidence            8999999975 89888876432   444556667778888876      46899999999   88888999999998764

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.69  E-value=1.2e-16  Score=109.47  Aligned_cols=137  Identities=13%  Similarity=0.042  Sum_probs=100.6

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHH---------HHHHHHHHhcCCCCceeeeeeeeecC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDE---------FINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~---------~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ..++|...+.+|+|+||.|+.... ++..+++|.+.+........         +.+|++.+..+.||+|....+++...
T Consensus        29 l~~~y~~~~~l~~~~f~~v~l~~~-~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL~~~GI~~~~d~~~~~  107 (232)
T PRK10359         29 LSYNIKTIKVFRNIDDTKVSLIDT-DYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRVRSEGLASLNDFYLLA  107 (232)
T ss_pred             hhCceEEEEEecCCCceEEEEEec-CCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHHHHCCCCcceEeeeec
Confidence            457899999999999999998765 57789999886543322222         57888999999999999998886543


Q ss_pred             --------CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 --------EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 --------~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                              +..+++|||++|.+|.++.... ..........+..++....+|+|++|+|++   +.++. ++++|||...
T Consensus       108 ~~~~~~~~~~~~lvmEyi~G~tL~~~~~~~-~~~~~~i~~~l~~lH~~gi~H~Dikp~Nil---i~~~g-i~liDfg~~~  182 (232)
T PRK10359        108 ERKTLRYAHTYIMLIEYIEGVELNDMPEIS-EDVKAKIKASIESLHQHGMVSGDPHKGNFI---VSKNG-LRIIDLSGKR  182 (232)
T ss_pred             ccccccccCCeEEEEEEECCccHHHhhhcc-HHHHHHHHHHHHHHHHcCCccCCCChHHEE---EeCCC-EEEEECCCcc
Confidence                    3578999999999998773211 111112222334444555689999999999   66666 8888999766

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.69  E-value=2.1e-16  Score=113.26  Aligned_cols=141  Identities=16%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ....++|.+.+.||+|++|.||++... ++..+++|.+.... ......+..|+..+... .|||++++++++.+....+
T Consensus        11 ~~~~~~~~~~~~lg~g~~~~v~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~   90 (296)
T cd06618          11 PADLNDLENLGEIGSGTCGQVYKMRFKKTGHVMAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVKCYGYFITDSDVF   90 (296)
T ss_pred             cCCcchheeeeEeeccCCeEEEEEEECCCCeEEEEEEEeccCChHHHHHHHHHHHHHHhccCCCchHhhheeeecCCeEE
Confidence            345678999999999999999999954 58899999876432 22334566677666666 5999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++||+++ ++.+++.....  ........+.+++.++.+       +|+|+++.|++   +.++..++|+|||.+.
T Consensus        91 ~v~e~~~~-~l~~l~~~~~~~l~~~~~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nil---l~~~~~~kL~dfg~~~  163 (296)
T cd06618          91 ICMELMST-CLDKLLKRIQGPIPEDILGKMTVAIVKALHYLKEKHGVIHRDVKPSNIL---LDASGNVKLCDFGISG  163 (296)
T ss_pred             EEeeccCc-CHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhCCEecCCCcHHHEE---EcCCCCEEECccccch
Confidence            99999855 77777665332  233344556677777665       46789999999   7788889999999876

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.68  E-value=5.8e-16  Score=106.21  Aligned_cols=137  Identities=26%  Similarity=0.307  Sum_probs=113.2

Q ss_pred             CcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           16 LNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      |.+.+.||+|++|.+|++... +++.+++|.+...... ....+.+|+..+..++|+|++++++.+...+..++++|+++
T Consensus         1 ~~~~~~i~~g~~~~v~~~~~~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~~~~~~v~e~~~   80 (225)
T smart00221        1 YELGKKLGEGAFGKVYLARDKGTGELVAVKVLKKEKTEKQREEFLREIRILKKLKHPNIVKLYGVFEDPEPLYLVMEYCE   80 (225)
T ss_pred             CceeeEeecCCCeEEEEEEEcCCCcEEEEEeeccccchHHHHHHHHHHHHHHhCCCCChhhheeeeecCCceEEEEeccC
Confidence            456788999999999999954 5889999988765544 56788899999999999999999999998899999999999


Q ss_pred             CCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           94 NGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|.+++....  ......+..+.+++.++.+      .|+++++.|++   +.....++++|||.+..
T Consensus        81 ~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~---v~~~~~~~l~d~g~~~~  147 (225)
T smart00221       81 GGDLFDYLRKKGGKLSEEEARFYLRQILEALEYLHSLGIVHRDLKPENIL---LGMDGLVKLADFGLARF  147 (225)
T ss_pred             CCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEeeCceeeE
Confidence            999999998754  3444455556666666655      57899999999   77778889999998773

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=99.67  E-value=2.8e-17  Score=119.71  Aligned_cols=141  Identities=20%  Similarity=0.173  Sum_probs=118.6

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..-+.|..-+.||+|+||.|+-|. ..+|+-+|+|++....   ..--...++|-.++..++.+.||.+--.|++++-++
T Consensus       182 vt~n~F~~~RvlGkGGFGEV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd~LC  261 (591)
T KOG0986|consen  182 VTKNTFRVYRVLGKGGFGEVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKDALC  261 (591)
T ss_pred             ccccceeeeEEEecccccceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCCceE
Confidence            345678888999999999999998 5689999998764431   111234678889999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|+..+.||||.-.|.+.+.   .......+..+|+.|+.++|      ||+||+||+   ++..+.+.|+|.|+|-
T Consensus       262 lVLtlMNGGDLkfHiyn~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNIL---LDd~GhvRISDLGLAv  335 (591)
T KOG0986|consen  262 LVLTLMNGGDLKFHIYNHGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENIL---LDDHGHVRISDLGLAV  335 (591)
T ss_pred             EEEEeecCCceeEEeeccCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhhee---eccCCCeEeeccceEE
Confidence            99999999999988887763   44566677889999999988      699999999   9999999999999985

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.66  E-value=3.4e-17  Score=112.55  Aligned_cols=149  Identities=14%  Similarity=0.142  Sum_probs=110.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeee-eecCCcceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGC-CLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~-~~~~~~~~lv~   89 (167)
                      .+.|.+.+.+|+|.||++..+++ .+...+++|.+. ........|.+|...--.+. |.||+.-++. |.+.+..++++
T Consensus        23 ~d~y~I~k~lgeG~FgkIlL~eHr~s~t~ivlKavp-~p~tt~~dF~rEfhY~~~Ls~H~hIi~tY~vaFqt~d~YvF~q  101 (378)
T KOG1345|consen   23 EDVYTINKQLGEGRFGKILLAEHRQSKTRIVLKAVP-RPQTTQADFVREFHYSFFLSPHQHIIDTYEVAFQTSDAYVFVQ  101 (378)
T ss_pred             hhhhhHHHHhcccceeeEEeeeccCCceEEEeeccC-cchhhHHHHHHHhccceeeccchhhhHHHHHHhhcCceEEEee
Confidence            36788999999999999999995 456777888765 33344567888887666664 8999987765 56677788999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhhhhhhhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRK  163 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~~i~hr~  163 (167)
                      ||+|.|||.+-+-..+..+.-.....-|++.++.+      +|||+|.+||++..- ..-.+|+||||.++-....||+-
T Consensus       102 E~aP~gdL~snv~~~GigE~~~K~v~~ql~SAi~fMHsknlVHRdlK~eNiLif~~-df~rvKlcDFG~t~k~g~tV~~~  180 (378)
T KOG1345|consen  102 EFAPRGDLRSNVEAAGIGEANTKKVFAQLLSAIEFMHSKNLVHRDLKAENILIFDA-DFYRVKLCDFGLTRKVGTTVKYL  180 (378)
T ss_pred             ccCccchhhhhcCcccccHHHHHHHHHHHHHHHHHhhccchhhcccccceEEEecC-CccEEEeeecccccccCceehhh
Confidence            99999999988887665554455555556666655      689999999994311 12478999999988555556654

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.66  E-value=7.8e-16  Score=110.31  Aligned_cols=140  Identities=12%  Similarity=0.096  Sum_probs=96.3

Q ss_pred             hhcCCcccceecccCceeEEEEEeC-C---CcEEEEEeccCCCcccH-----------HHHHHHHHHHhcCCCCceeeee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVGKGKL-----------DEFINKVVILSQINYRNVVKLL   76 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~~~~~-----------~~~~~e~~~~~~l~h~~i~~l~   76 (167)
                      ..++|.+.+.||+|+||.||++... +   +..+++|..........           .....+...+..+.|+++++++
T Consensus        10 ~~~~y~i~~~LG~G~fG~Vy~~~~~~~~~~~~~~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~   89 (294)
T PHA02882         10 TGKEWKIDKLIGCGGFGCVYETQCASDHCINNQAVAKIENLENETIVMETLVYNNIYDIDKIALWKNIHNIDHLGIPKYY   89 (294)
T ss_pred             CCCceEEeeEEecCCCceEEEEEEcCCcccccceEEEeccccCCchhhHHHHHHhhhhHHHHHHHHHhccCCCCCCCcEE
Confidence            4478999999999999999999843 3   44566665332221110           1122333455667899999999


Q ss_pred             eeeecCC----cceEEEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           77 GCCLETE----VPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        77 ~~~~~~~----~~~lv~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      +++....    ..+++++++.. ++.+.+.... .+.......+.+++.++.+      +|+|+||.|++   +.....+
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nil---l~~~~~~  165 (294)
T PHA02882         90 GCGSFKRCRMYYRFILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIM---VDGNNRG  165 (294)
T ss_pred             EeeeEecCCceEEEEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCcE
Confidence            8765543    34678887754 6666665433 2344455567777777776      57999999999   7778889


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +++|||+|+.
T Consensus       166 ~l~DFGla~~  175 (294)
T PHA02882        166 YIIDYGIASH  175 (294)
T ss_pred             EEEEcCCcee
Confidence            9999999873

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.65  E-value=1.3e-17  Score=114.20  Aligned_cols=137  Identities=18%  Similarity=0.147  Sum_probs=100.8

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK-GKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .+.+-+..||.|+||.|++-. .++|+..|||.++.... .+..++..|.++.... ++|||++++|.....+..|+-||
T Consensus        64 ~~Lqdlg~iG~G~fG~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~~cp~IVkfyGa~F~EGdcWiCME  143 (361)
T KOG1006|consen   64 DNLQDLGEIGNGAFGTVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSSNCPNIVKFYGALFSEGDCWICME  143 (361)
T ss_pred             chHHHHHHhcCCcchhhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhcCCcHHHHHhhhhhcCCceeeeHH
Confidence            445556789999999999877 46899999999876543 4556777888666555 68999999999999999999999


Q ss_pred             cCCCCCHHHHHhh------cCcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHE------QNEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~------~~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .+.- |+..+-+.      ...++...-...+.++.+|.|       +|||.||+||+   ++..+.+|+||||...
T Consensus       144 LMd~-SlDklYk~vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNIL---ldr~G~vKLCDFGIcG  216 (361)
T KOG1006|consen  144 LMDI-SLDKLYKRVYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNIL---LDRHGDVKLCDFGICG  216 (361)
T ss_pred             HHhh-hHHHHHHHHHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheE---EecCCCEeeecccchH
Confidence            9854 66544331      111221111222233445554       79999999999   8999999999999866

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.65  E-value=8e-18  Score=124.09  Aligned_cols=140  Identities=19%  Similarity=0.165  Sum_probs=115.2

Q ss_pred             hhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccC---CCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKV---VGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~---~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ...++..+..||-|+||.|=.+... ....+|+|+++.   .+....+....|-++|...+.|.|++++..|.++.++|+
T Consensus       418 ~l~dl~~iaTLGvGgFGRVELV~~~~~~~~fAlKilkK~hIVdtkQqeHv~sEr~Im~~~~s~fIvrLYrTfrd~kyvYm  497 (732)
T KOG0614|consen  418 KLSDLKRIATLGVGGFGRVELVKVNSQKATFALKILKKKHIVDTKQQEHVFSERNIMMECRSDFIVRLYRTFRDSKYVYM  497 (732)
T ss_pred             chhhhhhhhhcccCccceEEEEEecccchHHHHHHHhHhhccchhHHHHHHhHHHHHHhcCchHHHHHHHHhccchhhhh
Confidence            3456777888999999999877642 333477776544   344556778889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhhh------hcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRLK------RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||-|-||.++..+++++. .......+.-+++.++.|+|      ||+||+|.+   ++..+-+|+.|||+|+
T Consensus       498 LmEaClGGElWTiLrdRg~Fdd~tarF~~acv~EAfeYLH~k~iIYRDLKPENll---Ld~~Gy~KLVDFGFAK  568 (732)
T KOG0614|consen  498 LMEACLGGELWTILRDRGSFDDYTARFYVACVLEAFEYLHRKGIIYRDLKPENLL---LDNRGYLKLVDFGFAK  568 (732)
T ss_pred             hHHhhcCchhhhhhhhcCCcccchhhhhHHHHHHHHHHHHhcCceeccCChhhee---eccCCceEEeehhhHH
Confidence            9999999999999998864 33445555667788888887      699999999   8999999999999998

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.64  E-value=1.1e-15  Score=106.30  Aligned_cols=122  Identities=14%  Similarity=0.027  Sum_probs=95.7

Q ss_pred             cCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHHHHhh
Q 040049           25 GGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE  103 (167)
Q Consensus        25 g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~  103 (167)
                      |.++.||++.. .+++.+++|.+....     ...+|...+....|||++++++.+...+..++++||+++|+|.+.+..
T Consensus         4 g~~~~v~~~~~~~~~~~~~~K~i~~~~-----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~   78 (237)
T cd05576           4 GVIDKVLLVMDTRTQQTFILKGLRKSS-----EYSRERLTIIPHCVPNMVCLHKYIVSEDSVFLVLQHAEGGKLWSHISK   78 (237)
T ss_pred             cccceEEEEEEccCCcEEEEEeecchh-----hhhhHHHHHHhcCCCceeehhhheecCCeEEEEEecCCCCCHHHHHHH
Confidence            78999999984 578999999886432     122344555556799999999999999999999999999999999876


Q ss_pred             cCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049          104 QNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       104 ~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ... +.......+.+++.++.+      +|+|+++.|++   +.....++++|||.+.
T Consensus        79 ~~~l~~~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~l~df~~~~  133 (237)
T cd05576          79 FLNIPEECVKRWAAEMVVALDALHREGIVCRDLNPNNIL---LDDRGHIQLTYFSRWS  133 (237)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEE---EcCCCCEEEecccchh
Confidence            532 344445556677777766      57899999999   7888889999999754

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.63  E-value=7.9e-16  Score=104.34  Aligned_cols=144  Identities=13%  Similarity=0.125  Sum_probs=103.4

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..+.|.++++||+|+||.+|.+. ..+|+.||+|.-...  ....++.-|.++...++ ..+|..+.-+.....+-.+||
T Consensus        13 v~gky~lvrkiGsGSFGdIy~~~~i~~ge~VAiK~Es~~--a~hpqL~yEskvY~iL~~g~GiP~i~~y~~e~~ynvlVM   90 (341)
T KOG1163|consen   13 VGGKYKLVRKIGSGSFGDIYLGISITSGEEVAIKLESSK--AKHPQLLYESKVYRILQGGVGIPHIRHYGTEKDYNVLVM   90 (341)
T ss_pred             eccceEEEEeecCCchhheeeeeeccCCceEEEEeeccc--CCCcchhHHHHHHHHhccCCCCchhhhhccccccceeee
Confidence            34679999999999999999998 678999999974322  22246778999999886 478888877787888889999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHH--HHH------HcCchhhhhcccchhHHHHhhhcc---CCccccccchhhhhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFI--LSR------RGGIPRLKRKKKKNKIWKQQLLKG---LAPKRKKFEEEKWRHT  158 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~--~~i------~~~l~~~h~~~~~~~~~~~~~~~~---~~~~l~df~~~~~~~~  158 (167)
                      |.+ |.+|+++..-....++......  =|+      ++--.++|+|+||+|++   +--+   -..-+.|||+|+-...
T Consensus        91 dLL-GPsLEdLfnfC~R~ftmkTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFL---MGlgrh~~kl~LIDFGLaKky~d  166 (341)
T KOG1163|consen   91 DLL-GPSLEDLFNFCSRRFTMKTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFL---MGLGRHCNKLYLIDFGLAKKYRD  166 (341)
T ss_pred             ecc-CccHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHhhccccccCCcccee---eccccccceEEEEeccchhhhcc
Confidence            988 7799999886654433322221  123      33334578999999998   4332   2334569999995544


Q ss_pred             hhh
Q 040049          159 VLK  161 (167)
Q Consensus       159 i~h  161 (167)
                      +--
T Consensus       167 ~~t  169 (341)
T KOG1163|consen  167 IRT  169 (341)
T ss_pred             ccc
Confidence            433

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.63  E-value=1.2e-16  Score=110.09  Aligned_cols=140  Identities=16%  Similarity=0.149  Sum_probs=106.6

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++.+.+..+|+|+.|.|++++ .++|...|||.+.... ..+..+.+..++++... ++|+|++.+|+|.++..+++-
T Consensus        90 dindl~~l~dlGsGtcG~V~k~~~rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s~dcpyIV~c~GyFi~n~dV~Ic  169 (391)
T KOG0983|consen   90 DINDLENLGDLGSGTCGQVWKMRFRSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKSHDCPYIVQCFGYFITNTDVFIC  169 (391)
T ss_pred             ChHHhhhHHhhcCCCccceEEEEEcccceEEEEEeecccCCHHHHHHHHHhhhHHhhccCCCeeeeeeeEEeeCchHHHH
Confidence            44566777889999999999999 5689999999876543 34455666677666655 589999999999999999998


Q ss_pred             EecCCCCCHHHHHhhcCcchHh--hHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNEDFVK--DVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~~~~~--~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||.+.. .+..+++.-..+.+.  .=.....++.+|.|       +|||.||+||+   ++..+.+|+||||.+..
T Consensus       170 MelMs~-C~ekLlkrik~piPE~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNIL---lDe~GniKlCDFGIsGr  241 (391)
T KOG0983|consen  170 MELMST-CAEKLLKRIKGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNIL---LDERGNIKLCDFGISGR  241 (391)
T ss_pred             HHHHHH-HHHHHHHHhcCCchHHhhhhhHHHHHHHHHHHHHhcceeecccCccceE---EccCCCEEeecccccce
Confidence            887743 455555543333222  22345667778877       69999999999   99999999999999874

>PRK14879 serine/threonine protein kinase; Provisional

Probab=99.62  E-value=2.8e-15  Score=102.49  Aligned_cols=130  Identities=12%  Similarity=0.093  Sum_probs=96.3

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcc--------cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG--------KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~--------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      +.||+|++|.||++.. .+..+++|........        ....+.+|+..+..+.++++.....++...+..+++|||
T Consensus         2 ~~l~~G~~~~vy~~~~-~~~~~~vK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~   80 (211)
T PRK14879          2 KLIKRGAEAEIYLGDF-LGIKAVIKWRIPKRYRHPELDERIRRERTRREARIMSRARKAGVNVPAVYFVDPENFIIVMEY   80 (211)
T ss_pred             cccccCceEEEEEEee-CCCceEEEEeCCcCCcChHHHHHHHHHHHHHHHHHHHHHHHCCCCCCeEEEEeCCCCEEEEEE
Confidence            5789999999999986 6777888875432211        123577899999999999887777777777888999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCc------hhhhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      ++|++|.+.+.....   .......+++.++      ..+|+|+++.|++   +. +..++++|||.+++..
T Consensus        81 ~~G~~L~~~~~~~~~---~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil---~~-~~~~~liDf~~a~~~~  145 (211)
T PRK14879         81 IEGEPLKDLINSNGM---EELELSREIGRLVGKLHSAGIIHGDLTTSNMI---LS-GGKIYLIDFGLAEFSK  145 (211)
T ss_pred             eCCcCHHHHHHhccH---HHHHHHHHHHHHHHHHHhCCcccCCCCcccEE---EE-CCCEEEEECCcccCCC
Confidence            999999998875432   2233333444444      4478999999998   44 6677888999988643

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.61  E-value=2.2e-17  Score=113.81  Aligned_cols=137  Identities=18%  Similarity=0.167  Sum_probs=107.9

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----Ccce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLET-----EVPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~~~~   86 (167)
                      +.+-.+.||-|+||.||.+.+ ++|+.++.|++...-.  -...++.+|+.++..++|.|++...+...-.     ..+|
T Consensus        54 Di~PDRPIGYGAFGVVWsVTDPRdgrrvalkK~pnvfq~L~s~krvFre~kmLcfFkHdNVLSaLDILQPph~dfFqEiY  133 (449)
T KOG0664|consen   54 DIQPDRPIGYGAFGVVWSVTDPRSGKRVALKKMPNVFQNLASCKRVFREIKMLSSFRHDNVLSLLDILQPANPSFFQELY  133 (449)
T ss_pred             cCCCCCcccccceeEEEeccCCCCccchhHhhcchHHHHHHHHHHHHHHHHHHHhhccccHHHHHHhcCCCCchHHHHHH
Confidence            345568899999999999985 5789999987654322  2346788999999999999999998887443     3468


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++|.+.. +|+..|-.-.. ..........||+.|+.|      +|||+|++|.+   +.++...||||||+|+.
T Consensus       134 V~TELmQS-DLHKIIVSPQ~Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLL---VNSNCvLKICDFGLARv  205 (449)
T KOG0664|consen  134 VLTELMQS-DLHKIIVSPQALTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLL---VNSNCILKICDFGLART  205 (449)
T ss_pred             HHHHHHHh-hhhheeccCCCCCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEE---eccCceEEecccccccc
Confidence            88898866 88888776443 333455567888889887      57999999999   88899999999999984

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.61  E-value=1.2e-14  Score=98.29  Aligned_cols=131  Identities=30%  Similarity=0.357  Sum_probs=106.6

Q ss_pred             ecccCceeEEEEEeC-CCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHH
Q 040049           22 LGQGGQGTVHKGMLA-DERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSD   99 (167)
Q Consensus        22 ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~   99 (167)
                      ||+|++|.+|++... +++.+++|........ ..+.+.+|+..++.+.|++++++++++......++++|++++++|.+
T Consensus         1 l~~g~~~~v~~~~~~~~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~~~~e~~~~~~l~~   80 (215)
T cd00180           1 LGEGGFGTVYLARDKKTGKKVAIKIIKKEDSSSLLEELLREIEILKKLNHPNIVKLYGVFEDENHLYLVMEYCEGGSLKD   80 (215)
T ss_pred             CCcCCceEEEEEEecCCCcEEEEEEeccccchhHHHHHHHHHHHHHhcCCCCeeeEeeeeecCCeEEEEEecCCCCcHHH
Confidence            589999999999954 5889999987654332 34678899999999999999999999999899999999999899999


Q ss_pred             HHhhc--CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049          100 YLHEQ--NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus       100 ~i~~~--~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      ++...  .......+..+.+++.++.+      .|.|+++.|++   +.. +..++++||+.+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~---~~~~~~~~~l~d~~~~~~  142 (215)
T cd00180          81 LLKENEGKLSEDEILRILLQILEGLEYLHSNGIIHRDLKPENIL---LDSDNGKVKLADFGLSKL  142 (215)
T ss_pred             HHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHhhEE---EeCCCCcEEEecCCceEE
Confidence            98875  23445555566666666655      57899999999   666 67889999998763

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.60  E-value=1.8e-15  Score=116.83  Aligned_cols=137  Identities=16%  Similarity=0.168  Sum_probs=91.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CC----CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeee------ee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-AD----ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGC------CL   80 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~----~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~------~~   80 (167)
                      ..++|.+.+.||+|+||.||+|.. .+    +..+|+|.+.....  .+.+..+  .+....+.++..+...      ..
T Consensus       130 ~~~~y~l~~~LG~G~FG~VYka~~~~~~~~~~~~vAvK~~~~~~~--~e~~~~e--~l~~~~~~~~~~~~~~~~~~~~~~  205 (566)
T PLN03225        130 KKDDFVLGKKLGEGAFGVVYKASLVNKQSKKEGKYVLKKATEYGA--VEIWMNE--RVRRACPNSCADFVYGFLEPVSSK  205 (566)
T ss_pred             ccCCeEEeEEEeeCCCeEEEEEEEcCCccccCcEEEEEEecccch--hHHHHHH--HHHhhchhhHHHHHHhhhcccccc
Confidence            567899999999999999999995 45    78999998653222  2222222  1111122222221111      23


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCcch---------------------HhhHHHHHHHHcCchh------hhhcccchh
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNEDF---------------------VKDVGFILSRRGGIPR------LKRKKKKNK  133 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~~~---------------------~~~~~~~~~i~~~l~~------~h~~~~~~~  133 (167)
                      .....++++||+++++|.+++.......                     ........+++.++.|      +|+|+|++|
T Consensus       206 ~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~N  285 (566)
T PLN03225        206 KEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQN  285 (566)
T ss_pred             cCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHHH
Confidence            4567899999999999999988643211                     1122345667777766      579999999


Q ss_pred             HHHHhhhc-cCCccccccchhhh
Q 040049          134 IWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus       134 ~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      |+   +.. ...++++|||+|+.
T Consensus       286 IL---l~~~~~~~KL~DFGlA~~  305 (566)
T PLN03225        286 II---FSEGSGSFKIIDLGAAAD  305 (566)
T ss_pred             EE---EeCCCCcEEEEeCCCccc
Confidence            98   664 46789999999973

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.59  E-value=3.2e-16  Score=105.53  Aligned_cols=139  Identities=18%  Similarity=0.288  Sum_probs=104.7

Q ss_pred             hhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCC--cceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETE--VPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~--~~~l   87 (167)
                      ..++|++++++|+|.++.|+.|. ..+.+.+++|.+++.+.   ....+|+.++..++ ||||+++.+...++.  ...+
T Consensus        36 ~~ddYeivrk~GRGKYSEVFeg~~~~~~eK~ViKiLKPVkk---kKIkREikIL~nL~gg~NIi~L~DiV~Dp~SktpaL  112 (338)
T KOG0668|consen   36 NQDDYEIVRKVGRGKYSEVFEGINITNNEKCVIKILKPVKK---KKIKREIKILQNLRGGPNIIKLLDIVKDPESKTPSL  112 (338)
T ss_pred             ccchHHHHHHHcCccHhhHhcccccCCCceEEEeeechHHH---HHHHHHHHHHHhccCCCCeeehhhhhcCccccCchh
Confidence            56789999999999999999998 56788999998875433   67889999999996 999999999997764  4679


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCc------hhhhhcccchhHHHHhhhcc-CCccccccchhhhhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKWRHT  158 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~~~~  158 (167)
                      ++|++.+.+...+-....  ......++.+++.++      ..+|||.||.|++   |+.. -...+.|+|+|.+.++
T Consensus       113 iFE~v~n~Dfk~ly~tl~--d~dIryY~~elLkALdyCHS~GImHRDVKPhNvm---Idh~~rkLrlIDWGLAEFYHp  185 (338)
T KOG0668|consen  113 IFEYVNNTDFKQLYPTLT--DYDIRYYIYELLKALDYCHSMGIMHRDVKPHNVM---IDHELRKLRLIDWGLAEFYHP  185 (338)
T ss_pred             HhhhhccccHHHHhhhhc--hhhHHHHHHHHHHHHhHHHhcCcccccCCcceee---echhhceeeeeecchHhhcCC
Confidence            999998866544433322  122233344554444      4578999999999   5543 3456779999997654

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.58  E-value=1.3e-14  Score=97.87  Aligned_cols=129  Identities=13%  Similarity=0.062  Sum_probs=89.8

Q ss_pred             cccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHH-----HHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEe
Q 040049           17 NVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLD-----EFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~-----~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .+...|++|+||.|+.+.. .+.+++.+.+.... ...+     .+.+|+++++.+. ++++++++++    +..++++|
T Consensus         5 ~~~~~l~~~~f~~v~~~~~-~~~k~~~~~l~~~~-~~~~~~~~~l~~rE~~iL~~L~~~~~vP~ll~~----~~~~lvme   78 (218)
T PRK12274          5 AVNEPLKSDTFGRILLVRG-GERKFVRRDLSAAP-WWLRGVAWWLARREALALRQLDGLPRTPRLLHW----DGRHLDRS   78 (218)
T ss_pred             ccceeecCCCcceEEEeec-CCceeeecccccch-hhhhhHHHHHHHHHHHHHHhcCCCCCCCEEEEE----cCEEEEEe
Confidence            4567899999999997764 56677766554332 2222     4678999999995 5888898886    44689999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcc-cchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKK-KKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~-~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+.|.+|.+.+..............+..++....+|+|+ ++.|++   +..+..++++|||.|.
T Consensus        79 yI~G~~L~~~~~~~~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NIL---v~~~g~i~LIDFG~A~  140 (218)
T PRK12274         79 YLAGAAMYQRPPRGDLAYFRAARRLLQQLHRCGVAHNDLAKEANWL---VQEDGSPAVIDFQLAV  140 (218)
T ss_pred             eecCccHHhhhhhhhHHHHHHHHHHHHHHHHCcCccCCCCCcceEE---EcCCCCEEEEECCCce
Confidence            999988876543211011111122333455556689999 789999   6677788999999987

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=99.58  E-value=7e-15  Score=99.71  Aligned_cols=136  Identities=13%  Similarity=-0.011  Sum_probs=93.5

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcc----------------------cHHHHHHHHHHH
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG----------------------KLDEFINKVVIL   64 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~----------------------~~~~~~~e~~~~   64 (167)
                      +++......|.+.+.||+|+||.||++...+|+.+++|.+......                      .......|...+
T Consensus         8 ~~~~~~~~~~~~~~~i~~G~~g~Vy~~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l   87 (198)
T cd05144           8 HTLVKRGVVESLGNQIGVGKESDVYLALDPDGNPVALKFHRLGRTSFRKVKRKRDYLGDRKHASWLYLSRLAAQKEFAAL   87 (198)
T ss_pred             HHHHHcCchhhcCCccccCcceEEEEEEcCCCCEEEEEEEecccchhhhhcchHHHHhccccchhHHHhHHHHHHHHHHH
Confidence            4555555568888999999999999998778999999976543210                      111256677888


Q ss_pred             hcCCCCc--eeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHH------cCchhhhhcccchhHHH
Q 040049           65 SQINYRN--VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRR------GGIPRLKRKKKKNKIWK  136 (167)
Q Consensus        65 ~~l~h~~--i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~------~~l~~~h~~~~~~~~~~  136 (167)
                      ..+.+++  ++..++    .+..+++|||++|++|.+.... .    .......+++      +....+|+|++|.|++ 
T Consensus        88 ~~l~~~~i~v~~~~~----~~~~~lv~e~~~g~~L~~~~~~-~----~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nil-  157 (198)
T cd05144          88 KALYEEGFPVPKPID----WNRHAVVMEYIDGVELYRVRVL-E----DPEEVLDEILEEIVKAYKHGIIHGDLSEFNIL-  157 (198)
T ss_pred             HHHHHcCCCCCceee----cCCceEEEEEeCCcchhhcccc-c----cHHHHHHHHHHHHHHHHHCCCCcCCCCcccEE-
Confidence            8877664  333332    2456899999999988765431 1    1112222222      2334589999999999 


Q ss_pred             HhhhccCCccccccchhh
Q 040049          137 QQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~  154 (167)
                        ++.+..++++|||.+.
T Consensus       158 --l~~~~~~~liDfg~~~  173 (198)
T cd05144         158 --VDDDEKIYIIDWPQMV  173 (198)
T ss_pred             --EcCCCcEEEEECCccc
Confidence              7778889999999884

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=99.57  E-value=1.2e-14  Score=112.04  Aligned_cols=137  Identities=16%  Similarity=0.191  Sum_probs=94.7

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEe-ccC-CCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKK-SKV-VGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~-~~~-~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..|...+.||+|+||.||++.+... .+++|. ... ...      ...+.+.+|++++..++|++++....++.+.+..
T Consensus       333 ~~~~~~~~iG~G~~g~Vy~~~~~~~-~~v~k~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~  411 (535)
T PRK09605        333 RRKIPDHLIGKGAEADIKKGEYLGR-DAVIKERVPKGYRHPELDERLRTERTRAEARLLSEARRAGVPTPVIYDVDPEEK  411 (535)
T ss_pred             cccCccceeccCCcEEEEEEeecCc-cceeEEEecccccchhHHHHHHHHHHHHHHHHHHhhcccCCCeeEEEEEeCCCC
Confidence            3445678999999999999985433 333332 211 111      1234578999999999999998877777777788


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +++|||+++++|.+.+.... .........+..++....+|+|++|.|++   + .+..++++|||.++..
T Consensus       412 ~lv~E~~~g~~L~~~l~~~~-~~~~~i~~~L~~lH~~giiHrDlkp~NIL---l-~~~~~~liDFGla~~~  477 (535)
T PRK09605        412 TIVMEYIGGKDLKDVLEGNP-ELVRKVGEIVAKLHKAGIVHGDLTTSNFI---V-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             EEEEEecCCCcHHHHHHHHH-HHHHHHHHHHHHHHhCCCccCCCChHHEE---E-ECCcEEEEeCcccccC
Confidence            99999999999998876211 11111112223333444578999999998   5 6678889999998854

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.57  E-value=2.2e-15  Score=100.00  Aligned_cols=141  Identities=16%  Similarity=0.168  Sum_probs=104.7

Q ss_pred             hhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCC-CcccHHHHHHHHHHHhc-CCCCceeeeeeeeecCCcceE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVV-GKGKLDEFINKVVILSQ-INYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~-l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ...++......||+|++|.|-+-+ ..+|...|+|.+... +.....+.+.|+.+... ..+|.+++++|.+.+...+++
T Consensus        43 V~ad~L~~i~elGrGayG~vekmrh~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r~~~CPf~V~FyGa~~regdvwI  122 (282)
T KOG0984|consen   43 VPADDLVGIEELGRGAYGVVEKMRHIQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMRTVDCPFTVHFYGALFREGDVWI  122 (282)
T ss_pred             cchhhhhhhhhhcCCccchhhheeeccCCeEEEEeeehhhcChHHHHHHHHhhhhhccCCCCCeEEEeehhhhccccEEE
Confidence            344555666779999999987666 458999999988654 33444567788876665 579999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhc---Cc--chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQ---NE--DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~---~~--~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .||.+.. ||..+-++-   +.  ++...=.....+++++.+       +|||.||+||+   +...+.+|+||||.+.+
T Consensus       123 cME~M~t-Sldkfy~~v~~~g~~ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiL---In~~GqVKiCDFGIsG~  198 (282)
T KOG0984|consen  123 CMELMDT-SLDKFYRKVLKKGGTIPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNIL---INYDGQVKICDFGISGY  198 (282)
T ss_pred             eHHHhhh-hHHHHHHHHHhcCCcCchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEE---EccCCcEEEccccccee
Confidence            9999865 777665542   11  222222334455556554       79999999999   99999999999999763

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.57  E-value=1.8e-14  Score=99.59  Aligned_cols=127  Identities=20%  Similarity=0.210  Sum_probs=105.3

Q ss_pred             CceeEEEEEeC-CCcEEEEEeccCCCccc-HHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHHHHhh
Q 040049           26 GQGTVHKGMLA-DERIVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE  103 (167)
Q Consensus        26 ~~g~v~~~~~~-~~~~~avk~~~~~~~~~-~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~  103 (167)
                      +||.+|++... +++.+++|.+....... .+.+.+|++.++.++|+|++++.+.+......++++|++++++|.+++..
T Consensus         1 ~~g~v~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l~~~~i~~~~~~~~~~~~~~l~~e~~~~~~L~~~~~~   80 (244)
T smart00220        1 SFGKVYLARDKKTGKLVAIKVIKKEKIKKKRERILREISILKKLKHPNIVRLYDVFEDEDKLYLVMEYCDGGDLFDLLKK   80 (244)
T ss_pred             CceEEEEEEECCCCcEEEEEEecccccccHHHHHHHHHHHHHhCCCCcHHHHHhheeeCCEEEEEEeCCCCCCHHHHHHh
Confidence            57899999954 58899999886554444 67889999999999999999999999998999999999999999999886


Q ss_pred             cC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          104 QN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       104 ~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .. ......+..+.+++.++.+      +|+++++.|++   +..+...+++|||.+..
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~---~~~~~~~~l~d~~~~~~  136 (244)
T smart00220       81 RGRLSEDEARFYARQILSALEYLHSNGIIHRDLKPENIL---LDEDGHVKLADFGLARQ  136 (244)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHcCeecCCcCHHHeE---ECCCCcEEEccccceee
Confidence            54 2445566666777777766      57899999999   77788899999998773

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=99.56  E-value=1.4e-14  Score=98.27  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=91.1

Q ss_pred             eecccCceeEEEEEeCCCcEEEEEeccCCC--cc------cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           21 VLGQGGQGTVHKGMLADERIVAVKKSKVVG--KG------KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .||+|++|.||++.+ ++..+++|......  ..      ....+.+|++++..+.++++.....++...+..+++|||+
T Consensus         1 ~ig~G~~~~vy~~~~-~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~~~~~~~~lv~e~~   79 (199)
T TIGR03724         1 LIAKGAEAIIYLGDF-LGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYDVDPDNKTIVMEYI   79 (199)
T ss_pred             CCCCCceEEEEEeec-CCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEEEE
Confidence            379999999999985 56788888754321  11      1245678999999998877655555555667789999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      +|++|.+.+..............+..++....+|+|+++.|++   +. +..+++.|||.++...
T Consensus        80 ~g~~l~~~~~~~~~~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil---~~-~~~~~liDfg~a~~~~  140 (199)
T TIGR03724        80 EGKPLKDVIEEGNDELLREIGRLVGKLHKAGIVHGDLTTSNII---VR-DDKLYLIDFGLGKYSD  140 (199)
T ss_pred             CCccHHHHHhhcHHHHHHHHHHHHHHHHHCCeecCCCCcceEE---EE-CCcEEEEECCCCcCCC
Confidence            9999998876532111111111222333444578999999998   44 6778888999988643

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.53  E-value=7.3e-15  Score=113.65  Aligned_cols=129  Identities=21%  Similarity=0.294  Sum_probs=100.7

Q ss_pred             ccceecccCcee-EEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecCCCC
Q 040049           18 VNIVLGQGGQGT-VHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        18 ~~~~ig~g~~g~-v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      -.+.+|.|+-|+ ||+|.. .++.||||.+..   +......+|+..++.-+ ||||+++++.-.++...||..|.|.- 
T Consensus       513 ~~eilG~Gs~Gt~Vf~G~y-e~R~VAVKrll~---e~~~~A~rEi~lL~eSD~H~NviRyyc~E~d~qF~YIalELC~~-  587 (903)
T KOG1027|consen  513 PKEILGYGSNGTVVFRGVY-EGREVAVKRLLE---EFFDFAQREIQLLQESDEHPNVIRYYCSEQDRQFLYIALELCAC-  587 (903)
T ss_pred             cHHHcccCCCCcEEEEEee-CCceehHHHHhh---HhHHHHHHHHHHHHhccCCCceEEEEeeccCCceEEEEehHhhh-
Confidence            345788888876 688876 678999998753   33356779999999884 99999999999999999999999955 


Q ss_pred             CHHHHHhhcCc-----chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-----cCCccccccchhh
Q 040049           96 NLSDYLHEQNE-----DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-----GLAPKRKKFEEEK  154 (167)
Q Consensus        96 ~L~~~i~~~~~-----~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-----~~~~~l~df~~~~  154 (167)
                      +|.+++.....     ....++....+++.|+++      +|||+||.||+   |..     ...++|+|||+++
T Consensus       588 sL~dlie~~~~d~~~~~~i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNIL---I~~~~~~~~~ra~iSDfglsK  659 (903)
T KOG1027|consen  588 SLQDLIESSGLDVEMQSDIDPISVLSQIASGLAHLHSLKIVHRDLKPQNIL---ISVPSADGTLRAKISDFGLSK  659 (903)
T ss_pred             hHHHHHhccccchhhcccccHHHHHHHHHHHHHHHHhcccccccCCCceEE---EEccCCCcceeEEeccccccc
Confidence            99999997411     113446666677766665      68999999999   544     2688999999987

>smart00090 RIO RIO-like kinase

Probab=99.51  E-value=4.5e-14  Score=98.16  Aligned_cols=135  Identities=11%  Similarity=-0.020  Sum_probs=91.1

Q ss_pred             hhcCCcccceecccCceeEEEEE--eCCCcEEEEEeccCCCcc------------------------cHHHHHHHHHHHh
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGM--LADERIVAVKKSKVVGKG------------------------KLDEFINKVVILS   65 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~--~~~~~~~avk~~~~~~~~------------------------~~~~~~~e~~~~~   65 (167)
                      ....|.+.+.||+|++|.||+|.  ..+|+.+|+|.+......                        ....+..|+..+.
T Consensus        26 ~~~~~~i~~~Lg~G~~g~Vy~a~~~~~~g~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~L~  105 (237)
T smart00090       26 RGILSAIGGCISTGKEANVYHALDFDGSGKERAVKIYRTGTLEFKRRDRYVDGDFRFKYRKINPRKLVRLWAEKEFRNLQ  105 (237)
T ss_pred             cCchHHhCCeeccCcceeEEEEEecCCCCcEEEEEEEEcCcceecchhhhcccchhhccCCCCHHHHHHHHHHHHHHHHH
Confidence            33458889999999999999998  468999999987643210                        0123567888888


Q ss_pred             cCCCCc--eeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCc------h-hhhhcccchhHH
Q 040049           66 QINYRN--VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGI------P-RLKRKKKKNKIW  135 (167)
Q Consensus        66 ~l~h~~--i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l------~-~~h~~~~~~~~~  135 (167)
                      .+.+.+  ++..+++    ...++||||++|.+|......... ........+.+++.++      . .+|+|++|.|++
T Consensus       106 ~L~~~~i~~p~~~~~----~~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIl  181 (237)
T smart00090      106 RLYEAGVPVPKPIAW----RRNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNIL  181 (237)
T ss_pred             HHHhcCCCCCeeeEe----cCceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEE
Confidence            886432  3333432    235899999999888665432221 1112223344555544      3 578999999998


Q ss_pred             HHhhhccCCccccccchhh
Q 040049          136 KQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~  154 (167)
                         +. ...++++|||.+.
T Consensus       182 ---i~-~~~i~LiDFg~a~  196 (237)
T smart00090      182 ---VH-DGKVVIIDVSQSV  196 (237)
T ss_pred             ---EE-CCCEEEEEChhhh
Confidence               55 6678889999887

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.47  E-value=3.5e-14  Score=107.10  Aligned_cols=135  Identities=18%  Similarity=0.129  Sum_probs=104.5

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...|.....+|.|+|+.+..+. ..+++..++|++....    ....+|+.++... +|||++++.+.+.+....|+|+|
T Consensus       321 ~~~y~~~~~~~~gs~s~~~~~~~~~t~~~~~vkii~~~~----~~~~~e~~~~~~~~~h~niv~~~~v~~~~~~~~~v~e  396 (612)
T KOG0603|consen  321 TESYEFREELGEGSFSAVKYCESSPTDQEPAVKIISKRA----DDNQDEIPISLLVRDHPNIVKSHDVYEDGKEIYLVME  396 (612)
T ss_pred             chhhccccccCCCCccceeeeeccccccchhheeccccc----cccccccchhhhhcCCCcceeecceecCCceeeeeeh
Confidence            4677888889999999999998 5678889999886542    2233566555554 69999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh-hccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL-LKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~-~~~~~~~l~df~~~~  154 (167)
                      .+.|+-+.+.+...............+++.++.+      +|||++|+||+   + ......+++|||.++
T Consensus       397 ~l~g~ell~ri~~~~~~~~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL---~~~~~g~lrltyFG~a~  464 (612)
T KOG0603|consen  397 LLDGGELLRRIRSKPEFCSEASQWAAELVSAVDYLHEQGVVHRDLKPGNIL---LDGSAGHLRLTYFGFWS  464 (612)
T ss_pred             hccccHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcCeeecCCChhhee---ecCCCCcEEEEEechhh
Confidence            9999988888876654323332344555666655      56999999999   6 466778999999987

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=99.46  E-value=4.3e-14  Score=101.09  Aligned_cols=142  Identities=20%  Similarity=0.150  Sum_probs=107.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-C-C----ceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-Y-R----NVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h-~----~i~~l~~~~~~~~~   84 (167)
                      ..++|.++..+|+|.||+|..|.+ .++..+|+|+++.. ..-.+..+.|+++++.+. + |    -++++.+||...+.
T Consensus        87 l~~Ry~i~~~lGeGtFGkV~ec~D~~~~~~vAlKIik~V-~kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrgh  165 (415)
T KOG0671|consen   87 LTNRYEIVDLLGEGTFGKVVECWDRETKEHVALKIIKNV-DKYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGH  165 (415)
T ss_pred             cccceehhhhhcCCcccceEEEeecCCCceehHHHHHHH-HHHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCc
Confidence            478899999999999999999984 56788999988643 233466778899999883 2 2    35788899999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHH-----------------h
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ-----------------Q  138 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~-----------------~  138 (167)
                      .++|.|.+ |-|+.+++.....   +.........|++.++++      +|-|+||+||++-                 +
T Consensus       166 iCivfell-G~S~~dFlk~N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r  244 (415)
T KOG0671|consen  166 ICIVFELL-GLSTFDFLKENNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIR  244 (415)
T ss_pred             eEEEEecc-ChhHHHHhccCCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceec
Confidence            99999987 6699999998653   223333445566666666      5789999999743                 1


Q ss_pred             hhccCCccccccchhhh
Q 040049          139 LLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       139 ~~~~~~~~l~df~~~~~  155 (167)
                      ..+...+++.|||-|..
T Consensus       245 ~~ks~~I~vIDFGsAtf  261 (415)
T KOG0671|consen  245 PLKSTAIKVIDFGSATF  261 (415)
T ss_pred             cCCCcceEEEecCCcce
Confidence            23456778889998874

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.44  E-value=2.2e-13  Score=98.42  Aligned_cols=142  Identities=15%  Similarity=0.213  Sum_probs=107.4

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEe-C---CCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecC
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGML-A---DERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLET   82 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~---~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~   82 (167)
                      .+....+.|..+++||+|+|+.||++.+ .   .++.+|+|.+...  +......+|++++..+. +.|++++.+++..+
T Consensus        30 ~~p~~~~~~~~v~kigeGsFssv~~a~~~~~~~~~~~valk~i~~t--s~p~ri~~El~~L~~~gG~~ni~~~~~~~rnn  107 (418)
T KOG1167|consen   30 DIPFISNAYKVVNKIGEGSFSSVYKATDIEQDTKRRYVALKAIYRT--SSPSRILNELEMLYRLGGSDNIIKLNGCFRNN  107 (418)
T ss_pred             hhhhhhhhhhhhccccccchhhhhhhhHhhhccccceEeeeecccc--cCchHHHHHHHHHHHhccchhhhcchhhhccC
Confidence            3455678899999999999999999983 2   4678999987543  23356889999999995 89999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCc------hhhhhcccchhHHHHhhhccC-Cccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQLLKGL-APKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~~-~~~l~df~~~~~  155 (167)
                      +...+|+||.+..+-.++.....  ......+......++      .++|||+||+|++   ..... .-.|.|||+|.+
T Consensus       108 d~v~ivlp~~~H~~f~~l~~~l~--~~~i~~Yl~~ll~Al~~~h~~GIvHRDiKpsNFL---~n~~t~rg~LvDFgLA~~  182 (418)
T KOG1167|consen  108 DQVAIVLPYFEHDRFRDLYRSLS--LAEIRWYLRNLLKALAHLHKNGIVHRDIKPSNFL---YNRRTQRGVLVDFGLAQR  182 (418)
T ss_pred             CeeEEEecccCccCHHHHHhcCC--HHHHHHHHHHHHHHhhhhhccCccccCCCccccc---cccccCCceEEechhHHH
Confidence            99999999999888777776543  333333444444444      4579999999998   33322 224569999996


Q ss_pred             h
Q 040049          156 R  156 (167)
Q Consensus       156 ~  156 (167)
                      +
T Consensus       183 ~  183 (418)
T KOG1167|consen  183 Y  183 (418)
T ss_pred             H
Confidence            4

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.43  E-value=4.3e-13  Score=94.91  Aligned_cols=139  Identities=16%  Similarity=0.144  Sum_probs=101.8

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      =.|.+.++||+|+||+++.|. +-+++.||+|.-.  ..++..++..|.+..+.+. .++|.+++-+-...-+-.+|+|.
T Consensus        28 ~hyrVGkKIGeGsFG~lf~G~Nl~nne~VAIKfEP--rkS~APQLrdEYr~YKlL~g~~GIP~vYYFGqeG~~NiLVidL  105 (449)
T KOG1165|consen   28 PHYRVGKKIGEGSFGVLFLGKNLYNNEPVAIKFEP--RKSEAPQLRDEYRTYKLLGGTEGIPQVYYFGQEGKYNILVIDL  105 (449)
T ss_pred             ccceeccccccCcceeeecccccccCceEEEEecc--ccCCcchHHHHHHHHHHHcCCCCCCceeeeccccchhhhhhhh
Confidence            479999999999999999998 6789999999643  2234467888999999885 69999877666555566789998


Q ss_pred             CCCCCHHHHHhhcCcchHhhH--HHHHHHHcCchhhh------hcccchhHHHHhhhc--cCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDV--GFILSRRGGIPRLK------RKKKKNKIWKQQLLK--GLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~--~~~~~i~~~l~~~h------~~~~~~~~~~~~~~~--~~~~~l~df~~~~~  155 (167)
                      + |.+|+++..-++..+.+..  ....|++..+.++|      ||+||+|+++-.--.  .-.+-+.|||.|+-
T Consensus       106 L-GPSLEDLFD~CgR~FSvKTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~  178 (449)
T KOG1165|consen  106 L-GPSLEDLFDLCGRRFSVKTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKE  178 (449)
T ss_pred             h-CcCHHHHHHHhcCcccHHhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhh
Confidence            8 7799998876665443322  23456666777776      899999998432111  12334569999993

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.39  E-value=1.5e-12  Score=94.57  Aligned_cols=139  Identities=15%  Similarity=0.148  Sum_probs=95.2

Q ss_pred             CCcccceecccCceeEEEEEeCC--CcEEEEEeccCCCcccHHHHHHHHHHHhcCC----CCceeeeeeee-ecCCcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLAD--ERIVAVKKSKVVGKGKLDEFINKVVILSQIN----YRNVVKLLGCC-LETEVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~~--~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~----h~~i~~l~~~~-~~~~~~~l   87 (167)
                      +|.+.+.||+|+||.||.+....  ...+|+|............+..|..++..+.    .+++..+++.. ....+-++
T Consensus        19 ~~~i~~~iG~G~fG~V~~v~~~~~~~~~~a~K~e~~~~~~~~~~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~i   98 (322)
T KOG1164|consen   19 RYKLGKKIGEGGFGAVYLVSDKSEKNKEYAKKLEKKELGSKPSVLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFI   98 (322)
T ss_pred             ceEEeeeccccCCceEEEEEecCCCCeeEEEEEEEecccCCCccchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEE
Confidence            89999999999999999998533  3478888655432222225667777777765    36888888888 47778899


Q ss_pred             EEecCCCCCHHHHHhhcC-cchHhhH--HHHHHHHcCc------hhhhhcccchhHHHHhhhcc--CCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQN-EDFVKDV--GFILSRRGGI------PRLKRKKKKNKIWKQQLLKG--LAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-~~~~~~~--~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~--~~~~l~df~~~~  154 (167)
                      ||+.+ |.+|.++..... ..++...  ....|++.++      .++|||+||+|+.+..-...  ..+.+.|||+++
T Consensus        99 VM~l~-G~sL~dl~~~~~~~~fs~~T~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar  175 (322)
T KOG1164|consen   99 VMSLL-GPSLEDLRKRNPPGRFSRKTVLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLAR  175 (322)
T ss_pred             EEecc-CccHHHHHHhCCCCCcCHhHHHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCc
Confidence            99987 779999876554 2222222  2233444444      56899999999983221111  345667999998

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=99.37  E-value=1.2e-12  Score=84.44  Aligned_cols=133  Identities=17%  Similarity=0.108  Sum_probs=93.8

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCC--CceeeeeeeeecCCcceEEEecCCCC
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINY--RNVVKLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h--~~i~~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      +++.+++|.++.+|++...+ ..+++|.......  ...+..|+..+..+.+  +.+++++.+...++..++++||++++
T Consensus         2 ~~~~i~~g~~~~v~~~~~~~-~~~~iK~~~~~~~--~~~~~~e~~~~~~l~~~~~~~p~~~~~~~~~~~~~~v~e~~~g~   78 (155)
T cd05120           2 SIKLLKGGLTNRVYLLGTKD-EDYVLKINPSREK--GADREREVAILQLLARKGLPVPKVLASGESDGWSYLLMEWIEGE   78 (155)
T ss_pred             cceecccccccceEEEEecC-CeEEEEecCCCCc--hhHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCccEEEEEecCCe
Confidence            45779999999999998643 6789998754433  4578889999988865  58888888887778899999999987


Q ss_pred             CHHHHHhhc-CcchHhhHHHHHHHHcCc---hhhhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           96 NLSDYLHEQ-NEDFVKDVGFILSRRGGI---PRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        96 ~L~~~i~~~-~~~~~~~~~~~~~i~~~l---~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      ++... ... ...........+..++..   ..+|+|+++.|++   +.+...+++.||+.+.+..
T Consensus        79 ~~~~~-~~~~~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil---~~~~~~~~l~Df~~~~~~~  140 (155)
T cd05120          79 TLDEV-SEEEKEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNIL---VDDGKILGIIDWEYAGYGP  140 (155)
T ss_pred             ecccC-CHHHHHHHHHHHHHHHHHHhCCCceEEEecCCCcceEE---EECCcEEEEEecccccCCC
Confidence            77543 000 001111112222333332   3679999999999   6666778889999988643

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.36  E-value=2.6e-12  Score=94.82  Aligned_cols=123  Identities=20%  Similarity=0.216  Sum_probs=96.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC--------CCceeeeeeeeecC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN--------YRNVVKLLGCCLET   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~--------h~~i~~l~~~~~~~   82 (167)
                      +..+|.+.++||=|.|++||+|++ .+.+.||+|+.+.. .--.+..+.|++++++++        ...+++|++.|.-.
T Consensus        76 ~~gRY~v~rKLGWGHFSTVWLawDtq~~r~VAlKVvKSA-qhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~Fkhs  154 (590)
T KOG1290|consen   76 NGGRYHVQRKLGWGHFSTVWLAWDTQNKRYVALKVVKSA-QHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHS  154 (590)
T ss_pred             cCceEEEEEeccccccceeEEEeeccCCeEEEEEEEehh-hHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceec
Confidence            346899999999999999999994 56788999987633 334567788999999762        24689999998643


Q ss_pred             ----CcceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchhhh-------hcccchhHHH
Q 040049           83 ----EVPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRLK-------RKKKKNKIWK  136 (167)
Q Consensus        83 ----~~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~h-------~~~~~~~~~~  136 (167)
                          ..++||+|++ |.+|..+|+....   +..-....+.|++.||.|+|       -|+||+|+|+
T Consensus       155 GpNG~HVCMVfEvL-GdnLLklI~~s~YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl  221 (590)
T KOG1290|consen  155 GPNGQHVCMVFEVL-GDNLLKLIKYSNYRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLL  221 (590)
T ss_pred             CCCCcEEEEEehhh-hhHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeee
Confidence                3589999998 7799999997542   44455566788999999865       6999999983

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=99.34  E-value=5.4e-13  Score=93.69  Aligned_cols=138  Identities=19%  Similarity=0.170  Sum_probs=102.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------C
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------E   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~   83 (167)
                      ..+|.-+..++.|.= .|..+.+ -.++.+++|.....  .....++..+|..++..+.|+|+++++.++.-+      .
T Consensus        16 ~~Ry~nL~p~~~g~~-~v~~a~D~v~~~~v~ikk~~~pf~n~~~akra~rel~l~~~v~~~nii~l~n~ftP~~~l~~~~   94 (369)
T KOG0665|consen   16 PKRYVNLKPIGSGAQ-IVVAAFDQVLGRPVAIKKLSRPFQNQTHAKRAYRELKLMKCVNHKNIISLLNVFTPQKTLEEFQ   94 (369)
T ss_pred             eeeeeeecccCCCCc-eEEecchhhccCceehhhhcCccccCccchhhhhhhhhhhhhcccceeeeeeccCccccHHHHH
Confidence            456777777887776 4555553 36788888865332  222335677899999999999999999998533      3


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      .+|+|||++.. +|.+.+.-. ..-........|.++|+.+      +|||+||+|++   +-.+.+.|+.|||+|+-.
T Consensus        95 e~y~v~e~m~~-nl~~vi~~e-lDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsniv---v~~~~~lKi~dfg~ar~e  168 (369)
T KOG0665|consen   95 EVYLVMELMDA-NLCQVILME-LDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIV---VNSDCTLKILDFGLARTE  168 (369)
T ss_pred             hHHHHHHhhhh-HHHHHHHHh-cchHHHHHHHHHHHHHHHHHHhcceeecccCcccce---ecchhheeeccchhhccc
Confidence            47999999965 899888832 2334444556777777776      57999999999   788899999999999843

>cd05119 RIO RIO kinase family, catalytic domain

Probab=99.31  E-value=6.4e-12  Score=84.32  Aligned_cols=127  Identities=13%  Similarity=0.005  Sum_probs=74.8

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCccc--HHH----------------------HHHHHHHHhcCCCCc--e
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGK--LDE----------------------FINKVVILSQINYRN--V   72 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~--~~~----------------------~~~e~~~~~~l~h~~--i   72 (167)
                      .+.||+|+||.||++...+++.+++|.+.......  ...                      ...|.+.+..+.+.+  +
T Consensus         2 ~~~lg~G~~g~Vy~a~~~~~~~vavKv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~   81 (187)
T cd05119           2 GGPIGTGKEADVYLALDGDGEPVAVKIYRTGRTSFKKRKRYRTGDYRFGRKKSNWRYLSRLWAEKEFRNLKRLYEAGVPV   81 (187)
T ss_pred             CcccccccceeEEEEECCCCCEEEEEEEecCccchhhhhhhhHHHHHhccCCcchhhhhhHHHHHHHHHHHHHHHcCCCC
Confidence            46799999999999997689999999865432211  111                      123444444443222  2


Q ss_pred             eeeeeeeecCCcceEEEecCCCCCHHH-HHhhcCcchHhhHHHHHHH------HcC-chhhhhcccchhHHHHhhhccCC
Q 040049           73 VKLLGCCLETEVPLLVYEYIPNGNLSD-YLHEQNEDFVKDVGFILSR------RGG-IPRLKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        73 ~~l~~~~~~~~~~~lv~e~~~~g~L~~-~i~~~~~~~~~~~~~~~~i------~~~-l~~~h~~~~~~~~~~~~~~~~~~  144 (167)
                      .+.++.    ...++++||++++++.. .+...... ........++      ++. ...+|+|++|+|++   +. +..
T Consensus        82 ~~~~~~----~~~~lv~e~~~g~~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nil---i~-~~~  152 (187)
T cd05119          82 PKPIDL----NRHVLVMEFIGGDGIPAPRLKDVRLL-EDPEELYDQILELMRKLYREAGLVHGDLSEYNIL---VD-DGK  152 (187)
T ss_pred             CceEec----CCCEEEEEEeCCCCccChhhhhhhhc-ccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEE---EE-CCc
Confidence            233322    24589999999843321 11111100 1122222222      333 44579999999998   55 778


Q ss_pred             ccccccchhh
Q 040049          145 PKRKKFEEEK  154 (167)
Q Consensus       145 ~~l~df~~~~  154 (167)
                      ++++|||.+.
T Consensus       153 ~~liDfg~a~  162 (187)
T cd05119         153 VYIIDVPQAV  162 (187)
T ss_pred             EEEEECcccc
Confidence            8899999986

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.28  E-value=7.7e-11  Score=84.44  Aligned_cols=134  Identities=23%  Similarity=0.281  Sum_probs=105.2

Q ss_pred             CcccceecccCceeEEEEEeCCCcEEEEEeccCCCcc---cHHHHHHHHHHHhcCCCC-ceeeeeeeeecCCcceEEEec
Q 040049           16 LNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG---KLDEFINKVVILSQINYR-NVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~---~~~~~~~e~~~~~~l~h~-~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      |.+...+|.|+|+.||.+...  ..+++|.+......   ....+.+|+..+..+.|+ +++++.+.+......++++++
T Consensus         2 ~~~~~~l~~g~~~~v~~~~~~--~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   79 (384)
T COG0515           2 YRILRKLGEGSFGEVYLARDR--KLVALKVLAKKLESKSKEVERFLREIQILASLNHPPNIVKLYDFFQDEGSLYLVMEY   79 (384)
T ss_pred             ceeEEeecCCCCeEEEEEEec--cEEEEEeechhhccchhHHHHHHHHHHHHHHccCCcceeeEEEEEecCCEEEEEEec
Confidence            667788999999999999864  67788876554332   367788999999999987 799999999777778999999


Q ss_pred             CCCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-Cccccccchhh
Q 040049           92 IPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-APKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-~~~l~df~~~~  154 (167)
                      +.++++.+.+....    ...........+++.++.+      +|+|+++.|++   +.... .++++|||.++
T Consensus        80 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil---~~~~~~~~~l~dfg~~~  150 (384)
T COG0515          80 VDGGSLEDLLKKIGRKGPLSESEALFILAQILSALEYLHSKGIIHRDIKPENIL---LDRDGRVVKLIDFGLAK  150 (384)
T ss_pred             CCCCcHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHee---ecCCCCeEEEeccCcce
Confidence            99999997777653    3444555556666666544      68999999998   66655 58899999887

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.26  E-value=3.3e-12  Score=95.17  Aligned_cols=138  Identities=18%  Similarity=0.111  Sum_probs=101.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC------CCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN------YRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~------h~~i~~l~~~~~~~~~   84 (167)
                      .-++|.+....|+|-|+.|.+|.+ ..|+.||||+|.... -....=+.|+++|+.|.      --+.++++..|.-.+.
T Consensus       430 LD~RY~V~~~~GkGvFs~Vvra~D~~r~~~vAiKIIRnNE-~M~KtGl~EleiLkKL~~AD~Edk~Hclrl~r~F~hknH  508 (752)
T KOG0670|consen  430 LDSRYEVQGYTGKGVFSTVVRARDQARGQEVAIKIIRNNE-VMHKTGLKELEILKKLNDADPEDKFHCLRLFRHFKHKNH  508 (752)
T ss_pred             hcceeEEEeccccceeeeeeeccccCCCCeeEEEEeecch-HHhhhhhHHHHHHHHhhccCchhhhHHHHHHHHhhhcce
Confidence            446788889999999999999984 468899999997532 22233457888888763      2356788888888899


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHh----hHH------HHHHHHcCchhhhhcccchhHHHHhhhcc-CCccccccchh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVK----DVG------FILSRRGGIPRLKRKKKKNKIWKQQLLKG-LAPKRKKFEEE  153 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~----~~~------~~~~i~~~l~~~h~~~~~~~~~~~~~~~~-~~~~l~df~~~  153 (167)
                      ++||+|-+.- +|-+++++.+.+..+    ...      ..+..+..+..+|.|+||.|||   +..+ ...||||||-|
T Consensus       509 LClVFE~Lsl-NLRevLKKyG~nvGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiL---VNE~k~iLKLCDfGSA  584 (752)
T KOG0670|consen  509 LCLVFEPLSL-NLREVLKKYGRNVGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNIL---VNESKNILKLCDFGSA  584 (752)
T ss_pred             eEEEehhhhc-hHHHHHHHhCcccceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceE---eccCcceeeeccCccc
Confidence            9999998855 899999987643211    111      2344455667799999999998   5544 46699999987


Q ss_pred             h
Q 040049          154 K  154 (167)
Q Consensus       154 ~  154 (167)
                      -
T Consensus       585 ~  585 (752)
T KOG0670|consen  585 S  585 (752)
T ss_pred             c
Confidence            6

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=99.24  E-value=2.7e-11  Score=91.23  Aligned_cols=132  Identities=17%  Similarity=0.066  Sum_probs=83.7

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcccH--------------------------H--------------HHHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKL--------------------------D--------------EFIN   59 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~--------------------------~--------------~~~~   59 (167)
                      +.+|+|++|.||+|...+|+.||||...+......                          .              .+.+
T Consensus       123 ~plasaSigQVh~A~l~~G~~VaVKv~rp~i~~~i~~Dl~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~Eldf~~  202 (437)
T TIGR01982       123 KPLAAASIAQVHRARLVDGKEVAVKVLRPGIEKTIAADIALLYRLARIVERLSPDSRRLRPTEVVKEFEKTLRRELDLRR  202 (437)
T ss_pred             cceeeeehhheEEEEecCCCEEEEEeeCCCcHHHHHHHHHHHHHHHHHHHHhCccccccCHHHHHHHHHHHHHHHHCHHH
Confidence            57999999999999988999999998654311100                          0              1334


Q ss_pred             HHHHHhcC----CCCceeeeeeee-ecCCcceEEEecCCCCCHHHHHhhcCcc--hH-hhH---HHHHHHHcCchhhhhc
Q 040049           60 KVVILSQI----NYRNVVKLLGCC-LETEVPLLVYEYIPNGNLSDYLHEQNED--FV-KDV---GFILSRRGGIPRLKRK  128 (167)
Q Consensus        60 e~~~~~~l----~h~~i~~l~~~~-~~~~~~~lv~e~~~~g~L~~~i~~~~~~--~~-~~~---~~~~~i~~~l~~~h~~  128 (167)
                      |++.+..+    ++.+-+.+...+ ...+..+++|||++|++|.+........  .. ...   ...+..+..-.++|+|
T Consensus       203 Ea~n~~~~~~~~~~~~~v~vP~v~~~~~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D  282 (437)
T TIGR01982       203 EAANASELGENFKNDPGVYVPEVYWDRTSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHAD  282 (437)
T ss_pred             HHHHHHHHHHhcCCCCCEEeCCEehhhcCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCC
Confidence            44434333    333333333333 2234578999999999998876532111  11 111   1112223344568999


Q ss_pred             ccchhHHHHhhhccCCccccccchhh
Q 040049          129 KKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++|+|++   +..+..+++.|||.+.
T Consensus       283 ~hPgNil---v~~~g~i~liDfG~~~  305 (437)
T TIGR01982       283 LHPGNIF---VLKDGKIIALDFGIVG  305 (437)
T ss_pred             CCcccEE---ECCCCcEEEEeCCCee
Confidence            9999999   7778888999999876

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=99.21  E-value=1.1e-11  Score=94.91  Aligned_cols=136  Identities=15%  Similarity=0.067  Sum_probs=83.0

Q ss_pred             cCCcccceecccCceeEEEEEeCC-CcEEEEEeccCCCcc----------------------------------cHHH--
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLAD-ERIVAVKKSKVVGKG----------------------------------KLDE--   56 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~-~~~~avk~~~~~~~~----------------------------------~~~~--   56 (167)
                      .+|+. +.+|+|++|.||+|...+ |+.||+|..++.-..                                  ..+.  
T Consensus       120 ~~fd~-~PlasaSiaQVh~A~l~~~G~~VAVKV~rP~i~~~I~~Dl~~l~~~a~~l~~~~~~~~~l~~~~~v~e~~~~l~  198 (537)
T PRK04750        120 DDFDI-KPLASASIAQVHFARLKDNGREVVVKVLRPDILPVIDADLALMYRLARWVERLLPDGRRLKPREVVAEFEKTLH  198 (537)
T ss_pred             HhcCh-hhhcCCCccEEEEEEECCCCCEEEEEEeCcchHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence            34665 789999999999999765 999999987643110                                  0111  


Q ss_pred             ----HHHHHHHHhcC----CCCceeeeeeeeec-CCcceEEEecCCCCCHHHHH--hhcCcch-Hhh----HHHHHHHHc
Q 040049           57 ----FINKVVILSQI----NYRNVVKLLGCCLE-TEVPLLVYEYIPNGNLSDYL--HEQNEDF-VKD----VGFILSRRG  120 (167)
Q Consensus        57 ----~~~e~~~~~~l----~h~~i~~l~~~~~~-~~~~~lv~e~~~~g~L~~~i--~~~~~~~-~~~----~~~~~~i~~  120 (167)
                          +.+|+..+.++    .+...+.+...+.+ ...-++||||+.|+++.+..  ...+... ...    .....|+ .
T Consensus       199 ~ElD~~~Ea~N~~~~~~~f~~~~~v~VP~v~~d~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qi-f  277 (537)
T PRK04750        199 DELDLMREAANASQLRRNFEDSDMLYVPEVYWDYCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQV-F  277 (537)
T ss_pred             HhhCHHHHHHHHHHHHHHccCCCCeecceeecccCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHH-H
Confidence                23333333322    33333443343322 34567999999999997642  2222111 111    1112222 2


Q ss_pred             CchhhhhcccchhHHHHhhhccC----Cccccccchhh
Q 040049          121 GIPRLKRKKKKNKIWKQQLLKGL----APKRKKFEEEK  154 (167)
Q Consensus       121 ~l~~~h~~~~~~~~~~~~~~~~~----~~~l~df~~~~  154 (167)
                      .-.+.|+|++|+|++   +..+.    ..++.|||...
T Consensus       278 ~~GffHaDpHPGNIl---v~~~g~~~~~i~llDFGivg  312 (537)
T PRK04750        278 RDGFFHADMHPGNIF---VSYDPPENPRYIALDFGIVG  312 (537)
T ss_pred             hCCeeeCCCChHHeE---EecCCCCCCeEEEEecceEE
Confidence            346799999999999   66665    78888999865

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.20  E-value=1.4e-11  Score=98.72  Aligned_cols=139  Identities=14%  Similarity=0.199  Sum_probs=95.8

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccH---HHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKL---DEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~---~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      -...|.+.+.+|+|++|.||+|...+|+.+|+|.-++....+.   .+++..++ .+  --+.|..+.......+..++|
T Consensus       696 ~~~~~~I~~e~G~g~y~~vy~a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk-~~--~~~~~~~~~~a~~~~~~S~lv  772 (974)
T KOG1166|consen  696 GGEKFCISKEIGEGSYGSVYVATHSNGKLVALKVEKPPNPWEFYICLQVMERLK-PQ--MLPSIMHISSAHVFQNASVLV  772 (974)
T ss_pred             cceeEEEEeeeccccceEEEEeecCCCcEEEEEeecCCCceeeeehHHHHHhhc-hh--hhcchHHHHHHHccCCcceee
Confidence            3467888899999999999999976799999998776655432   22222222 11  124556666666778888999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHH------HHHHcCchhhhhcccchhHHHHhhhc----cCCccccccchh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFI------LSRRGGIPRLKRKKKKNKIWKQQLLK----GLAPKRKKFEEE  153 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~------~~i~~~l~~~h~~~~~~~~~~~~~~~----~~~~~l~df~~~  153 (167)
                      +||.+.|+|.+++..... ...+....+      +..+++..++|.|+||+|+++..-..    ....+|.|||.+
T Consensus       773 ~ey~~~Gtlld~~N~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~s  848 (974)
T KOG1166|consen  773 SEYSPYGTLLDLINTNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRS  848 (974)
T ss_pred             eeccccccHHHhhccCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccc
Confidence            999999999999996543 334433333      33355566789999999998542111    234567799975

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=99.17  E-value=2.5e-10  Score=79.63  Aligned_cols=129  Identities=13%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             ceec-ccCceeEEEEEeCCCcEEEEEeccCC-------------CcccHHHHHHHHHHHhcCCCCce--eeeeeeeecC-
Q 040049           20 IVLG-QGGQGTVHKGMLADERIVAVKKSKVV-------------GKGKLDEFINKVVILSQINYRNV--VKLLGCCLET-   82 (167)
Q Consensus        20 ~~ig-~g~~g~v~~~~~~~~~~~avk~~~~~-------------~~~~~~~~~~e~~~~~~l~h~~i--~~l~~~~~~~-   82 (167)
                      ..+| .|+.|.+|.+.. .+..+++|.....             .......+.+|+.++..+.++++  +..+++.... 
T Consensus        37 ~~lg~~~g~gtv~~v~~-~~~~~vlk~~~r~~~i~kv~~~~~~~~~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~  115 (239)
T PRK01723         37 RVVGSAKGRGTTWFVQT-PGVNWVLRHYRRGGLIGKLSKDRYLFTGLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRH  115 (239)
T ss_pred             ceeecCCCCccEEEEEe-CCceEEEEEeeEcchHHhhhhhcccccchhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeec
Confidence            3566 788888888875 3667888765321             11233567889999999988775  5566654332 


Q ss_pred             Cc---ceEEEecCCC-CCHHHHHhhcCcchHhhHHHHHHHHcCc------hhhhhcccchhHHHHhhhccCCccccccch
Q 040049           83 EV---PLLVYEYIPN-GNLSDYLHEQNEDFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        83 ~~---~~lv~e~~~~-g~L~~~i~~~~~~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ..   .++++|+++| .+|.+++.+.... ..   ...+++.++      ..+|+|+++.|++   +..+..++++|||.
T Consensus       116 ~~~~~~~lV~e~l~G~~~L~~~l~~~~l~-~~---~~~~i~~~l~~lH~~GI~HrDlkp~NIL---v~~~~~v~LIDfg~  188 (239)
T PRK01723        116 GLFYRADILIERIEGARDLVALLQEAPLS-EE---QWQAIGQLIARFHDAGVYHADLNAHNIL---LDPDGKFWLIDFDR  188 (239)
T ss_pred             CcceeeeEEEEecCCCCCHHHHHhcCCCC-HH---HHHHHHHHHHHHHHCCCCCCCCCchhEE---EcCCCCEEEEECCC
Confidence            22   3599999997 6898887653212 12   233344444      3478999999999   66666788999998


Q ss_pred             hhhh
Q 040049          153 EKWR  156 (167)
Q Consensus       153 ~~~~  156 (167)
                      +...
T Consensus       189 ~~~~  192 (239)
T PRK01723        189 GELR  192 (239)
T ss_pred             cccC
Confidence            8754

>cd05151 ChoK Choline Kinase (ChoK)

Probab=98.95  E-value=2.3e-09  Score=70.68  Aligned_cols=129  Identities=12%  Similarity=-0.005  Sum_probs=80.8

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCcee-eeeeeeecCCcceEEEecCCCCCH
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV-KLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~-~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      ++.++.|..+.+|++.. .+..+++|....... .......|+..+..+...+++ +++...  .+..++|+||++|.++
T Consensus         3 ~~~l~~G~~~~vy~~~~-~~~~~~lK~~~~~~~-~~~~~~~E~~~l~~l~~~~~~P~~~~~~--~~~~~lv~e~i~G~~l   78 (170)
T cd05151           3 ISPLKGGMTNKNYRVEV-ANKKYVVRIPGNGTE-LLINRENEAENSKLAAEAGIGPKLYYFD--PETGVLITEFIEGSEL   78 (170)
T ss_pred             eeecCCcccCceEEEEE-CCeEEEEEeCCCCcc-cccCHHHHHHHHHHHHHhCCCCceEEEe--CCCCeEEEEecCCCcc
Confidence            35788999999999885 377899998654321 122456788888877544443 444433  3345799999999887


Q ss_pred             HHHHhhcCcchHhhHHHHHHHHcCch-----hhhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           98 SDYLHEQNEDFVKDVGFILSRRGGIP-----RLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        98 ~~~i~~~~~~~~~~~~~~~~i~~~l~-----~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      .+. ..............+.-++...     .+|+|+++.|++   +. +..+.+.||+.+.+.
T Consensus        79 ~~~-~~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil---~~-~~~~~liDf~~a~~~  137 (170)
T cd05151          79 LTE-DFSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFL---LD-DGRLWLIDWEYAGMN  137 (170)
T ss_pred             ccc-cccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEE---EE-CCeEEEEecccccCC
Confidence            643 1001011111222333344444     389999999998   54 456778899988754

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.88  E-value=6.1e-10  Score=77.47  Aligned_cols=112  Identities=24%  Similarity=0.368  Sum_probs=88.8

Q ss_pred             CcccceecccCceeEEEEEeCCCcEEEEEecc--CCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           16 LNVNIVLGQGGQGTVHKGMLADERIVAVKKSK--VVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~--~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      ..+..+|.+...|..|+|+++.+ .+++|++.  .......+.|..|...++-+.||||+++++.|..+..+.++..|+|
T Consensus       192 lnl~tkl~e~hsgelwrgrwqgn-divakil~vr~~t~risrdfneefp~lrifshpnilpvlgacnsppnlv~isq~mp  270 (448)
T KOG0195|consen  192 LNLITKLAESHSGELWRGRWQGN-DIVAKILNVREVTARISRDFNEEFPALRIFSHPNILPVLGACNSPPNLVIISQYMP  270 (448)
T ss_pred             hhhhhhhccCCCcccccccccCc-chhhhhhhhhhcchhhcchhhhhCcceeeecCCchhhhhhhccCCCCceEeeeecc
Confidence            34445677888899999998543 44555442  2344455678889999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCc---chHhhHHHHHHHHcCchhhhhc
Q 040049           94 NGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRLKRK  128 (167)
Q Consensus        94 ~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~h~~  128 (167)
                      .|+|...++....   .........+.++.|++++|.-
T Consensus       271 ~gslynvlhe~t~vvvd~sqav~faldiargmaflhsl  308 (448)
T KOG0195|consen  271 FGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSL  308 (448)
T ss_pred             chHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhc
Confidence            9999999997653   4456777889999999999853

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.65  E-value=2.2e-07  Score=61.46  Aligned_cols=133  Identities=17%  Similarity=0.151  Sum_probs=88.0

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCC---c-----ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVG---K-----GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~---~-----~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..+++|+=+.++.+.+ -|..+++|.-.+..   +     -..+...+|++++..+.-.++..-.=+..+++...++|||
T Consensus         2 ~~i~~GAEa~i~~~~~-~g~~av~K~Ri~K~YR~p~LD~klrr~Rt~~Earil~~a~~~GV~~P~v~dvD~~~~~I~me~   80 (204)
T COG3642           2 DLIKQGAEAIIYLTDF-LGLPAVVKERIPKRYRHPELDEKLRRERTRREARILAKAREAGVPVPIVYDVDPDNGLIVMEY   80 (204)
T ss_pred             chhhCCcceeEEeeec-cCcceEEEeecCcccCChHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEEcCCCCEEEEEE
Confidence            3567888888888865 34446666422211   1     1234578899999988665555545555667778899999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhhhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRH  157 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~  157 (167)
                      .+|-.|-+.+...........-..++-++.-.++|.|+.++|++    +.+..+.+.|||++....
T Consensus        81 I~G~~lkd~l~~~~~~~~r~vG~~vg~lH~~givHGDLTtsNiI----l~~~~i~~IDfGLg~~s~  142 (204)
T COG3642          81 IEGELLKDALEEARPDLLREVGRLVGKLHKAGIVHGDLTTSNII----LSGGRIYFIDFGLGEFSD  142 (204)
T ss_pred             eCChhHHHHHHhcchHHHHHHHHHHHHHHhcCeecCCCccceEE----EeCCcEEEEECCcccccc
Confidence            99988777777653222222233344455556689999999996    566657777999988654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.64  E-value=7.6e-09  Score=80.73  Aligned_cols=134  Identities=19%  Similarity=0.213  Sum_probs=92.2

Q ss_pred             cccceecccCceeEEEEEe-CCCcEEEEEecc----C-CCcccHH-HHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           17 NVNIVLGQGGQGTVHKGML-ADERIVAVKKSK----V-VGKGKLD-EFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~----~-~~~~~~~-~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .....+|.|++|.++.+.. ........|...    . ....+.. .+..|..+-..+.|||++............+-.|
T Consensus       321 ~~~~~~g~ga~g~~~~~~~~~~~~~~~~~~~r~~~~~~~s~~~~~~~i~sE~~i~~~l~h~~~~e~l~~~~~~~~~~~~m  400 (601)
T KOG0590|consen  321 KPGRVLGSGAYGSVRIAKRRSDLKSFPEKEFRVRVKPTESERKYNYNITSEFCIGSSLSHPNIIETLDIVQEIDGILQSM  400 (601)
T ss_pred             CccceeeecccCceEEEEecCCCccchhhhhhcccCCcccHHHHhhhhhhheeecccccCCchhhhHHHHhhcccchhhh
Confidence            3457889999996666652 233333333221    1 1111111 1445556666789999988777776655555559


Q ss_pred             ecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |||++ ||+..+.... ......-....|+..|+.|+      |+|+|++|++   +..++..+++|||.+.
T Consensus       401 E~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll---~~~~g~lki~Dfg~~~  468 (601)
T KOG0590|consen  401 EYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLL---VTENGILKIIDFGAAS  468 (601)
T ss_pred             hcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEE---EecCCceEEeecCcce
Confidence            99999 9999998763 34445566678888888885      6999999999   8888899999999865

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=98.61  E-value=2.8e-08  Score=72.40  Aligned_cols=145  Identities=17%  Similarity=0.230  Sum_probs=104.4

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCC------CcEEEEEeccC-CCcccHHHHHHHHHHHhcCCCCceeeeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKLLGCC   79 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~~avk~~~~-~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~   79 (167)
                      +++.....++.....+-+|.||.||.|.+.+      .+.+-+|-++. ..+-....++.|.-.+..+.|||+.++.+.+
T Consensus       277 ~~l~v~r~Rv~l~~llqEGtFGri~~gI~~eEdt~n~~q~v~vKTvk~~AS~iQv~~~L~es~lly~~sH~nll~V~~V~  356 (563)
T KOG1024|consen  277 QELTVQRCRVRLSCLLQEGTFGRIYRGIWREEDTYNDCQEVLVKTVKQHASQIQVNLLLQESMLLYGASHPNLLSVLGVS  356 (563)
T ss_pred             HhhhhhhhheechhhhhcCchhheeeeeecccCCcchHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCcCCCccceeEEE
Confidence            3455555677778889999999999996543      23344443322 2334456688888888899999999999988


Q ss_pred             ecC-CcceEEEecCCCCCHHHHHhhcCc-----chHh----hHHHHHHHHcCchhh------hhcccchhHHHHhhhccC
Q 040049           80 LET-EVPLLVYEYIPNGNLSDYLHEQNE-----DFVK----DVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        80 ~~~-~~~~lv~e~~~~g~L~~~i~~~~~-----~~~~----~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~  143 (167)
                      ... +..++.+.+..-|+|..++...+.     ....    ......|++.++.++      |.|+..-|+.   |+..+
T Consensus       357 ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtvtt~qlV~masQla~am~hlh~~~ViHkDiAaRNCv---Idd~L  433 (563)
T KOG1024|consen  357 IEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTVTTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCV---IDDQL  433 (563)
T ss_pred             eeccCcceEEEeccCcchHHHHHHHhccCCCccccchhHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcce---ehhhe
Confidence            654 567888888888899999994432     1122    233456777788774      6788889998   88889


Q ss_pred             Cccccccchhh
Q 040049          144 APKRKKFEEEK  154 (167)
Q Consensus       144 ~~~l~df~~~~  154 (167)
                      .+|++|-.++|
T Consensus       434 qVkltDsaLSR  444 (563)
T KOG1024|consen  434 QVKLTDSALSR  444 (563)
T ss_pred             eEEeccchhcc
Confidence            99999877665

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=98.56  E-value=1.3e-08  Score=77.55  Aligned_cols=130  Identities=20%  Similarity=0.120  Sum_probs=95.7

Q ss_pred             ecccCceeEEEEEe----CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecCCC
Q 040049           22 LGQGGQGTVHKGML----ADERIVAVKKSKVVG--KGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        22 ig~g~~g~v~~~~~----~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +|+|++|.|+.+..    ..+..+++|......  .+.......|..++...+ ||.++.++-.+.++..+++++++..|
T Consensus         2 lg~g~~gkvfLvrk~~g~da~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafqt~~kl~l~ld~~rg   81 (612)
T KOG0603|consen    2 LGQGSYGKVFLVRKAGGADAGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQTDGKLYLILDFLRG   81 (612)
T ss_pred             CCcCCCcchHHHHHhccccccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeeccccchhHhhhhccc
Confidence            68999999987652    246667777654432  122224556667777776 99999999999999999999999999


Q ss_pred             CCHHHHHhhcCcchHhh-HHHHHHHHc------CchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           95 GNLSDYLHEQNEDFVKD-VGFILSRRG------GIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        95 g~L~~~i~~~~~~~~~~-~~~~~~i~~------~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+|...+.+........ ..+....+.      .+..+++++|++|++   ++..+.++++|||.++
T Consensus        82 g~lft~l~~~~~f~~~~~~~~~aelaLald~lh~l~iiyrd~k~enil---ld~~Ghi~~tdfglsk  145 (612)
T KOG0603|consen   82 GDLFTRLSKEVMFDELDVAFYLAELALALDHLHKLGIAYRDYKLENVL---LLLEGHIKLTDFGLSK  145 (612)
T ss_pred             chhhhccccCCchHHHHHHHHHHHHHHHHhhcchhHHHHhccccccee---ecccCccccCCchhhh
Confidence            99998888765432222 222333333      444578999999999   8999999999999988

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=98.51  E-value=8.4e-08  Score=72.49  Aligned_cols=90  Identities=21%  Similarity=0.328  Sum_probs=76.3

Q ss_pred             HhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhhh-------hcccchhH
Q 040049           64 LSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRLK-------RKKKKNKI  134 (167)
Q Consensus        64 ~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~h-------~~~~~~~~  134 (167)
                      |+.+.|.|+.+++|.+.+++..++|++||+.|+|.+.+.....  ...+....+..++.|+.|+|       ..++..|+
T Consensus         1 l~~l~h~n~~~f~g~~~~~~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nC   80 (484)
T KOG1023|consen    1 LRQLDHDNLNKFIGASVDGPEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNC   80 (484)
T ss_pred             CcccchhhhhhheeeEecCCceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccc
Confidence            3567899999999999999999999999999999999997432  44555566778899999975       57899999


Q ss_pred             HHHhhhccCCccccccchhhhh
Q 040049          135 WKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus       135 ~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +   ++..+.+|++|||+....
T Consensus        81 l---vd~~w~lklt~~Gl~~~~   99 (484)
T KOG1023|consen   81 L---VDSRWVLKLTDFGLNSLL   99 (484)
T ss_pred             e---eeeeEEEEechhhhcccc
Confidence            8   889999999999997754

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.43  E-value=2.9e-08  Score=80.35  Aligned_cols=134  Identities=14%  Similarity=0.071  Sum_probs=94.7

Q ss_pred             CCcccceecccCceeEEEEEeCCCcEEEEEeccCCC-cccHHHHHHHHHH--HhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG-KGKLDEFINKVVI--LSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~-~~~~~~~~~e~~~--~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++..++.+|++.|=++.++.+..|. +++|.+...+ .-..+.+.++++-  ....++||.+++-.+..++...|+|-+|
T Consensus        24 e~~~~~~LGstRFlKv~r~k~~eG~-vVvKVFvk~~p~~sL~~~~qrL~~ik~~l~~~pn~lPfqk~~~t~kAAylvRqy  102 (1431)
T KOG1240|consen   24 ECHYVENLGSTRFLKVARAKDREGL-VVVKVFVKQDPTISLRPFKQRLEEIKFALMKAPNCLPFQKVLVTDKAAYLVRQY  102 (1431)
T ss_pred             ceeeecccCchhhhhhhhccCCCce-EEEEEEeccCCCCCchHHHHHHHHHHHHhhcCCcccchHHHHHhhHHHHHHHHH
Confidence            6888899999999999999876776 8888765443 3344444444432  4456899999998888888888999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ... +|.|.+..+.. ........++|++.++..      .|.|+|.+||+   +.+=-=+.++||---
T Consensus       103 vkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENIL---iTSWNW~~LtDFAsF  167 (1431)
T KOG1240|consen  103 VKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENIL---ITSWNWLYLTDFASF  167 (1431)
T ss_pred             Hhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEE---Eeeechhhhhccccc
Confidence            966 99999997754 222333346677666655      67899999998   443222345566543

>PLN00181 protein SPA1-RELATED; Provisional

Probab=98.37  E-value=8e-08  Score=77.80  Aligned_cols=85  Identities=11%  Similarity=0.089  Sum_probs=58.1

Q ss_pred             Cceeeeeeeee-------cCCcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhH
Q 040049           70 RNVVKLLGCCL-------ETEVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKI  134 (167)
Q Consensus        70 ~~i~~l~~~~~-------~~~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~  134 (167)
                      +|+.++++++.       ....++.++|++ +++|.+++....  .+.......+.|++.|+.|      +|+|+||+||
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~Ni  111 (793)
T PLN00181         33 DYVRSLLGSHKEGNLDGLDDDSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCF  111 (793)
T ss_pred             HHHHHhhcccCCccccccccchhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhE
Confidence            46666666651       223567788887 559999997543  2445566677888888887      5799999999


Q ss_pred             HHHhh----------------hccCCccccccchhhh
Q 040049          135 WKQQL----------------LKGLAPKRKKFEEEKW  155 (167)
Q Consensus       135 ~~~~~----------------~~~~~~~l~df~~~~~  155 (167)
                      ++...                .....++++|||.++.
T Consensus       112 Ll~~~~~~k~~d~~~~~~~~~~~~~~~ki~DfG~a~~  148 (793)
T PLN00181        112 VMSSFNHVSFIESASCSDSGSDEDATTKSREIGSSRR  148 (793)
T ss_pred             EEcccCcEEEeeccccCcccccccCcccccccccccc
Confidence            93210                2345678889998874

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=98.32  E-value=1.7e-06  Score=65.47  Aligned_cols=122  Identities=16%  Similarity=0.085  Sum_probs=84.4

Q ss_pred             eeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcceEEEecCCC-CCHHHHH
Q 040049           28 GTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVPLLVYEYIPN-GNLSDYL  101 (167)
Q Consensus        28 g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~~lv~e~~~~-g~L~~~i  101 (167)
                      ...|++. -.+|..+++|++.............-++.++++.|+|++++.+++.+    +..+.+|++|+|+ ++|.+.-
T Consensus       290 ~Ttyk~~s~~DG~~YvLkRlhg~r~~~~nk~t~lve~wkkl~h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~  369 (655)
T KOG3741|consen  290 ITTYKATSNVDGNAYVLKRLHGDRDQSTNKDTSLVEAWKKLCHTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLY  369 (655)
T ss_pred             ceeEeeeeccCCceeeeeeeccccccCcccchHHHHHHHHhccCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHH
Confidence            4567887 35799999998844333233334455788999999999999999874    3568899999986 4666554


Q ss_pred             hhcC----------------cchHhhHHHHHHHHcCchhhhh------cccchhHHHHhhhccCCccccccch
Q 040049          102 HEQN----------------EDFVKDVGFILSRRGGIPRLKR------KKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus       102 ~~~~----------------~~~~~~~~~~~~i~~~l~~~h~------~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      -...                .++...|.++.|+..+|.++|.      -+.+.+|+   +.....+.++..|.
T Consensus       370 F~~~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIl---v~G~~RIriS~C~i  439 (655)
T KOG3741|consen  370 FANPPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKIL---VTGKMRIRISGCGI  439 (655)
T ss_pred             ccCCccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeE---eeCcceEEEecccc
Confidence            3211                1347899999999999999994      36666666   44443555544443

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=98.30  E-value=3.3e-06  Score=56.09  Aligned_cols=136  Identities=12%  Similarity=0.083  Sum_probs=85.4

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCCC--------cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--------KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--------~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ....+.+|+=+.|+++.+ .|+.+.+|.-....        .-...+..+|++.+..+.--+|.--.=++.+...-.++|
T Consensus        11 ~l~likQGAEArv~~~~~-~Ge~~iIK~Rf~K~YRHP~LD~kLtr~Rt~~Ear~l~k~~~~GI~~P~l~~~D~~~~~i~M   89 (229)
T KOG3087|consen   11 SLELIKQGAEARVPRGSF-SGEAAIIKERFSKRYRHPALDQKLTRKRTKQEARLLAKCRALGIPAPRLIFIDTYGGQIYM   89 (229)
T ss_pred             cceeeeccceeeEeeecc-CCceeEEeecccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEEecCCCeEEE
Confidence            456788999998998876 57777787422211        113456788999998876555544444556666677999


Q ss_pred             ecCCC-CCHHHHHhhcCcchHh-----hHHHHH-HHH---cCchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPN-GNLSDYLHEQNEDFVK-----DVGFIL-SRR---GGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~-g~L~~~i~~~~~~~~~-----~~~~~~-~i~---~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||.+| -++.+++.....+...     .....+ +.+   +.=.++|.|+..+|+++..=.....+.+.|||++.
T Consensus        90 E~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls~  164 (229)
T KOG3087|consen   90 EFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLSS  164 (229)
T ss_pred             EeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecchh
Confidence            99977 4677777754322111     111222 222   22234899999999984332334555677999876

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=98.20  E-value=2.9e-06  Score=65.78  Aligned_cols=112  Identities=18%  Similarity=0.038  Sum_probs=83.8

Q ss_pred             eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHH
Q 040049           35 LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGF  114 (167)
Q Consensus        35 ~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~  114 (167)
                      ..++.++.+...+..+....+...+.+..++.++||||+++++.+...+..|+|+|.+.  .|...+++.+  .......
T Consensus        34 k~~~~~vsVF~~~~~~~~~~~~~~~A~k~lKtlRHP~Il~yL~t~e~~~~~ylvTErV~--Pl~~~lk~l~--~~~v~~G  109 (690)
T KOG1243|consen   34 KADGGPVSVFVYKRSNGEVTELAKRAVKRLKTLRHPNILSYLDTTEEEGTLYLVTERVR--PLETVLKELG--KEEVCLG  109 (690)
T ss_pred             eccCCceEEEEEeCCCchhhHHHHHHHHHhhhccCchhhhhhhhhcccCceEEEeeccc--cHHHHHHHhH--HHHHHHH
Confidence            45678888877665555555667788899999999999999999999999999999885  4767777654  3445556


Q ss_pred             HHHHHcCchhh-------hhcccchhHHHHhhhccCCccccccchh
Q 040049          115 ILSRRGGIPRL-------KRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus       115 ~~~i~~~l~~~-------h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      +.+|+.+|.++       |.++....+|   +...+.-+|.+|...
T Consensus       110 l~qIl~AL~FL~~d~~lvHgNv~~~SVf---Vn~~GeWkLggle~v  152 (690)
T KOG1243|consen  110 LFQILAALSFLNDDCNLVHGNVCKDSVF---VNESGEWKLGGLELV  152 (690)
T ss_pred             HHHHHHHHHHHhccCCeeeccEeeeeEE---EcCCCcEEEeeeEEE
Confidence            78899999887       4556666666   666666677665543

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=98.20  E-value=7.9e-06  Score=55.98  Aligned_cols=108  Identities=14%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCC--CceeeeeeeeecC---CcceEEEecCC
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGK-GKLDEFINKVVILSQINY--RNVVKLLGCCLET---EVPLLVYEYIP   93 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h--~~i~~l~~~~~~~---~~~~lv~e~~~   93 (167)
                      +.++.|..+.+|++...+|..+++|....... .....+.+|..+++.+.+  ..+.+++.+....   +..++++||++
T Consensus         4 ~~l~~G~~n~~~~v~~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~   83 (223)
T cd05154           4 RQLSGGQSNLTYLLTAGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVD   83 (223)
T ss_pred             eecCCCccceEEEEEecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeC
Confidence            56899999999999865567899998654322 134567889988888865  3356666666543   25689999999


Q ss_pred             CCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhh
Q 040049           94 NGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKR  127 (167)
Q Consensus        94 ~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~  127 (167)
                      |.++.+.+...............+++..+..+|.
T Consensus        84 G~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~  117 (223)
T cd05154          84 GRVLRDRLLRPELSPEERRALARALADTLAALHS  117 (223)
T ss_pred             CEecCCCCCCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence            9888765431111222233345566667777774

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=98.16  E-value=1e-05  Score=62.23  Aligned_cols=132  Identities=15%  Similarity=0.039  Sum_probs=82.1

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCc----------------------c----cHH--------H------HHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGK----------------------G----KLD--------E------FIN   59 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~----------------------~----~~~--------~------~~~   59 (167)
                      ..++.++.|.||+|++++|+.||||+..+.-.                      .    +..        .      +.+
T Consensus       131 ~PiAsASIaQVH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~  210 (517)
T COG0661         131 EPIASASIAQVHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRR  210 (517)
T ss_pred             CchhhhhHhhheeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHH
Confidence            67899999999999988999999997655210                      0    001        1      233


Q ss_pred             HHHHHhc----CCCCceeeeeeee-ecCCcceEEEecCCCCCHHHHH--hhcCcchH-hhH---HHHHHHHcCchhhhhc
Q 040049           60 KVVILSQ----INYRNVVKLLGCC-LETEVPLLVYEYIPNGNLSDYL--HEQNEDFV-KDV---GFILSRRGGIPRLKRK  128 (167)
Q Consensus        60 e~~~~~~----l~h~~i~~l~~~~-~~~~~~~lv~e~~~~g~L~~~i--~~~~~~~~-~~~---~~~~~i~~~l~~~h~~  128 (167)
                      |+.-+..    ++...-+.+-..+ +..+.-.++|||++|-.+.+..  +..+.... ...   ...++.+..-.+.|.|
T Consensus       211 EA~n~~~~~~nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD  290 (517)
T COG0661         211 EAANAERFRENFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD  290 (517)
T ss_pred             HHHHHHHHHHHcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC
Confidence            4333332    3332223333333 3456678999999998887773  33332211 111   1122223335679999


Q ss_pred             ccchhHHHHhhhccCCccccccchhh
Q 040049          129 KKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ..|+|++   +..++...+-|||...
T Consensus       291 pHpGNi~---v~~~g~i~~lDfGi~g  313 (517)
T COG0661         291 PHPGNIL---VRSDGRIVLLDFGIVG  313 (517)
T ss_pred             CCccceE---EecCCcEEEEcCccee
Confidence            9999999   7777777777999865

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.12  E-value=4.7e-05  Score=51.51  Aligned_cols=127  Identities=9%  Similarity=-0.032  Sum_probs=73.5

Q ss_pred             ceecccCceeEEEEEeC-------CCcEEEEEeccCCC----------------------cccHHH----HHHHHHHHhc
Q 040049           20 IVLGQGGQGTVHKGMLA-------DERIVAVKKSKVVG----------------------KGKLDE----FINKVVILSQ   66 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~-------~~~~~avk~~~~~~----------------------~~~~~~----~~~e~~~~~~   66 (167)
                      ..||+|.=+.||.|...       .+..+|+|..+...                      ......    ..+|.+.|.+
T Consensus         3 g~i~~GKEa~V~~~~~~~~~~~~~~~~~~avKi~r~~~~~Fk~~~~y~~~~~rf~~~~~k~~~~~~~~~wa~kE~r~L~r   82 (197)
T cd05146           3 GCISTGKESVVLHANGGSNETEQVIPTECAIKVFKTTLNEFKNRDKYIKDDYRFKDRFSKLNPRKIIRMWAEKEMHNLKR   82 (197)
T ss_pred             CccccCcceEEEEEecCcccccccCCceEEEEEEeccceeEcChhhhccCCcccccCcCCCCHHHHHHHHHHHHHHHHHH
Confidence            56889999999999743       24789999533210                      011112    2378888887


Q ss_pred             CCC--CceeeeeeeeecCCcceEEEecCCCCCHH-HHHhhcCcch---HhhHHHHHHHH----cCchhhhhcccchhHHH
Q 040049           67 INY--RNVVKLLGCCLETEVPLLVYEYIPNGNLS-DYLHEQNEDF---VKDVGFILSRR----GGIPRLKRKKKKNKIWK  136 (167)
Q Consensus        67 l~h--~~i~~l~~~~~~~~~~~lv~e~~~~g~L~-~~i~~~~~~~---~~~~~~~~~i~----~~l~~~h~~~~~~~~~~  136 (167)
                      +..  -+.+..+++    ..-++||||+.+..+. ..+++.....   ......+++.+    +....+|.|+++.|++ 
T Consensus        83 l~~~Gv~vP~pi~~----~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL-  157 (197)
T cd05146          83 MQKAGIPCPEVVVL----KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNML-  157 (197)
T ss_pred             HHHcCCCCCeEEEe----cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE-
Confidence            742  344455543    4567999999764332 1233221111   11122222222    3345589999999997 


Q ss_pred             HhhhccCCccccccchhh
Q 040049          137 QQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       137 ~~~~~~~~~~l~df~~~~  154 (167)
                        + .+..+.+.||+.+=
T Consensus       158 --~-~~~~v~iIDF~qav  172 (197)
T cd05146         158 --W-HDGKVWFIDVSQSV  172 (197)
T ss_pred             --E-ECCcEEEEECCCce
Confidence              4 34567777999753

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=98.12  E-value=1.7e-05  Score=53.33  Aligned_cols=127  Identities=18%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             EEEEEeCCCcEEEEEeccCCC-------------c---------c----cHHHHHHHHHHHhcCCCC--ceeeeeeeeec
Q 040049           30 VHKGMLADERIVAVKKSKVVG-------------K---------G----KLDEFINKVVILSQINYR--NVVKLLGCCLE   81 (167)
Q Consensus        30 v~~~~~~~~~~~avk~~~~~~-------------~---------~----~~~~~~~e~~~~~~l~h~--~i~~l~~~~~~   81 (167)
                      ||.|...+|..+|+|.-+...             .         .    ......+|.+.|..+...  ++++.+++.  
T Consensus         2 Vy~~~~~~~~~~a~K~~r~~~~~Fk~~~~y~~~~~r~~~~~~~~~~~~~~~~~~~~E~~~L~~l~~~Gv~vP~p~~~~--   79 (188)
T PF01163_consen    2 VYHAIDPDGEEVAVKIYRTGRTSFKRRKKYRDYDYRFKKYRHKSSWRYLIREWAKKEFRNLKRLYEAGVPVPKPYDYN--   79 (188)
T ss_dssp             EEEEEECTTEEEEEEEE-S---SS-HHHHHTTTSTTSTTC--G--CHHHHHHHHHHHHHHHHHCCCTT-SS--EEEEE--
T ss_pred             EEEEECCCCCEEEEEEeccCceEEEEeeeeecccchhcccccccCHHHHHHHHHHHHHHHHHHHHHCCccCCcEEEEe--
Confidence            788887788899999543210             0         0    123467899999998654  345555432  


Q ss_pred             CCcceEEEecCC--CCCHHHHHhhcC---cchHhhHHHHHH----HHcCchhhhhcccchhHHHHhhhccCCccccccch
Q 040049           82 TEVPLLVYEYIP--NGNLSDYLHEQN---EDFVKDVGFILS----RRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        82 ~~~~~lv~e~~~--~g~L~~~i~~~~---~~~~~~~~~~~~----i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                        .-.+||||++  |..+.. +.+..   ......+..++.    ..+....+|.|+...||+   +..+ .+.+.||+.
T Consensus        80 --~~~ivME~I~~~G~~~~~-l~~~~~~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIl---v~~~-~~~iIDf~q  152 (188)
T PF01163_consen   80 --RNVIVMEYIGEDGVPLPR-LKDVDLSPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNIL---VDDG-KVYIIDFGQ  152 (188)
T ss_dssp             --TTEEEEE--EETTEEGGC-HHHCGGGGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEE---EETT-CEEE--GTT
T ss_pred             --CCEEEEEecCCCccchhh-HHhccccchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEE---eecc-eEEEEecCc
Confidence              3469999998  544544 33322   122223333333    334556799999999997   5555 777779997


Q ss_pred             hhh-----hhhhhhhhhc
Q 040049          153 EKW-----RHTVLKRKEN  165 (167)
Q Consensus       153 ~~~-----~~~i~hr~~~  165 (167)
                      +-.     ...+..||.+
T Consensus       153 av~~~~p~a~~~l~RDi~  170 (188)
T PF01163_consen  153 AVDSSHPNAEELLRRDIE  170 (188)
T ss_dssp             EEETTSTTHHHHHHHHHH
T ss_pred             ceecCCccHHHHHHHHHH
Confidence            652     2357777764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=98.12  E-value=1.8e-06  Score=63.51  Aligned_cols=86  Identities=15%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             CCCCceeeeeeeeecC---------------------------CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHH
Q 040049           67 INYRNVVKLLGCCLET---------------------------EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRR  119 (167)
Q Consensus        67 l~h~~i~~l~~~~~~~---------------------------~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~  119 (167)
                      .+||||+.+.+.|.+.                           ..+|+||..++. +|.+++..+....-.....+.|.+
T Consensus       273 a~HPNIvri~~aF~dsv~~lPda~~~YPdalp~R~~p~g~g~~~tlylvMkrY~~-tLr~yl~~~~~s~r~~~~~laQlL  351 (598)
T KOG4158|consen  273 AKHPNIVRIQTAFIDSVKVLPDAIERYPDALPARWYPSGAGEPKTLYLVMKRYRQ-TLREYLWTRHRSYRTGRVILAQLL  351 (598)
T ss_pred             CCCCCEEeehhhhhhhhccCCchhhhCcccccceecccccCCCceEEEehhcchh-hHHHHHhcCCCchHHHHHHHHHHH
Confidence            4799999999887432                           246899988866 899999877654444445566777


Q ss_pred             cCchhh------hhcccchhHHHHhhhcc--CCccccccchhh
Q 040049          120 GGIPRL------KRKKKKNKIWKQQLLKG--LAPKRKKFEEEK  154 (167)
Q Consensus       120 ~~l~~~------h~~~~~~~~~~~~~~~~--~~~~l~df~~~~  154 (167)
                      .++.++      |+|+|++||++. ++.+  +...++|||..-
T Consensus       352 Eav~hL~~hgvAhRDlKSDNiL~E-lddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  352 EAVTHLHKHGVAHRDLKSDNILLE-LDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             HHHHHHHHccchhhcccccceEEE-ecCCCCcEEEEcccceee
Confidence            777764      799999999854 3333  344678999654

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=98.11  E-value=9e-07  Score=69.37  Aligned_cols=140  Identities=16%  Similarity=0.164  Sum_probs=102.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC--CCcEEEEEeccCCC--cccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA--DERIVAVKKSKVVG--KGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~l   87 (167)
                      ...|...+.||+|+++.+-.....  ....++.+.+....  .........|..+-..+. |+|++++++.....+..++
T Consensus        19 ~~~~~~~~~ig~gs~~~~~~~~~~~~~~~~~a~~~~s~~~~~~~~~~~i~~e~~~~~~~s~h~n~~~~~~~~~~~~~~~~   98 (601)
T KOG0590|consen   19 NSQYKLSRSIGKGSFSSSALASNSRDPESSSATKPISIPPKSEDSSEHIDTETDIQKKLSKHSNTVHMIEPSSSPRSYLL   98 (601)
T ss_pred             cccccccccccccccchhhhhhhcCCCcceeeccCCCCCCCccchhhhcCccccccccccccccccccCCccCCCccccc
Confidence            456888889999999998776632  33455666544332  222233334555555555 9999999999999999999


Q ss_pred             EEecCCCCCHHHHH-hhcC--cchHhhHHHHHHHHcCchhhh-------hcccchhHHHHhhhccC-Cccccccchhhh
Q 040049           88 VYEYIPNGNLSDYL-HEQN--EDFVKDVGFILSRRGGIPRLK-------RKKKKNKIWKQQLLKGL-APKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i-~~~~--~~~~~~~~~~~~i~~~l~~~h-------~~~~~~~~~~~~~~~~~-~~~l~df~~~~~  155 (167)
                      ..++..|+++++.+ ....  ......-.+..+...++.++|       ++++|+|.+   +.... ..+++|||+|..
T Consensus        99 ~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~~H~~~~~~h~~ikP~n~~---l~~s~~~l~~~df~~At~  174 (601)
T KOG0590|consen   99 SLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSYLHPENGVTHRDIKPSNSL---LDESGSALKIADFGLATA  174 (601)
T ss_pred             ccCcccccccccccccCCccCCCCcchhhhhhhhccCccccCcccccccCCCCCccch---hccCCCcccCCCchhhcc
Confidence            99999999999988 4432  233445556778888888766       799999998   77777 889999999883

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.78  E-value=8e-05  Score=57.47  Aligned_cols=135  Identities=10%  Similarity=-0.012  Sum_probs=77.0

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCc-----------------------c--------cHH------HHHHHHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGK-----------------------G--------KLD------EFINKVV   62 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~-----------------------~--------~~~------~~~~e~~   62 (167)
                      +.|+..+.+.||+++.++|+.||+|.-++.-.                       .        ..+      .|.+|++
T Consensus       167 ~piaaASlaQVhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~  246 (538)
T KOG1235|consen  167 EPIAAASLAQVHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAK  246 (538)
T ss_pred             chhhhcchhheEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHH
Confidence            57999999999999988899999996443100                       0        001      1233332


Q ss_pred             ----HHhcCCCCc---eeeeeeee-ecCCcceEEEecCCCCCHHHH--HhhcCcchHhhHHHHHH----HHcCchhhhhc
Q 040049           63 ----ILSQINYRN---VVKLLGCC-LETEVPLLVYEYIPNGNLSDY--LHEQNEDFVKDVGFILS----RRGGIPRLKRK  128 (167)
Q Consensus        63 ----~~~~l~h~~---i~~l~~~~-~~~~~~~lv~e~~~~g~L~~~--i~~~~~~~~~~~~~~~~----i~~~l~~~h~~  128 (167)
                          ....+.|-+   -+.+-.++ .-...-.++|||++|..+.+.  |.+.+.........+.+    .+-.-.++|.|
T Consensus       247 Nae~~~~~f~~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi~~~~i~~~l~~~~~~qIf~~GffHaD  326 (538)
T KOG1235|consen  247 NAERFRENFKDFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGISPHDILNKLVEAYLEQIFKTGFFHAD  326 (538)
T ss_pred             hHHHHHHHHHhcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCccCC
Confidence                222344444   12233333 223456899999998755443  34443322221111111    11122379999


Q ss_pred             ccchhHHHHhh-hccCCccccccchhh
Q 040049          129 KKKNKIWKQQL-LKGLAPKRKKFEEEK  154 (167)
Q Consensus       129 ~~~~~~~~~~~-~~~~~~~l~df~~~~  154 (167)
                      -.|+|++++.- ..+..+.+-|||+..
T Consensus       327 PHPGNilv~~~~~~~~~ivllDhGl~~  353 (538)
T KOG1235|consen  327 PHPGNILVRPNPEGDEEIVLLDHGLYA  353 (538)
T ss_pred             CCCCcEEEecCCCCCccEEEEcccccc
Confidence            99999993311 125667777999987

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=97.77  E-value=0.00012  Score=52.34  Aligned_cols=136  Identities=11%  Similarity=0.040  Sum_probs=73.1

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCC----------Cceeeeeeee-
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINY----------RNVVKLLGCC-   79 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h----------~~i~~l~~~~-   79 (167)
                      .+...+.||.|+++.||.+.+ .+++.+++|.+...   .....+.+.+|.-....+.+          -.++--++.. 
T Consensus        13 ~l~~~~~i~~g~~~~v~~v~d~~t~~~~avkvf~~~~~~~~~~~~~~~~e~l~~~~~~~~~~p~~a~~~~r~l~P~d~~~   92 (288)
T PF14531_consen   13 TLVRGRIIGKGGFSIVFEVTDVETGEEFAVKVFLLPADASANEYEQLKEEQLAITLFPGVKNPKEAYRHLRFLVPLDLLR   92 (288)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSTTHTTHHHHHHHHHHGGGGSTT--SHHHHHHHH-B---SEEEE
T ss_pred             EEEEccccccCCceEEEEEEEccCCceEEEEEEecccccchHHHHHHHHHHHHhhhhccCCCHHHHHHhceEEeeeEEEE
Confidence            455678899999999999996 57999999975322   22344556666544443222          1111111111 


Q ss_pred             --------ecCC--------cceEEEecCCCCCHHHHHhh---cCcc-hHhhHH----HHHHHHcC------chhhhhcc
Q 040049           80 --------LETE--------VPLLVYEYIPNGNLSDYLHE---QNED-FVKDVG----FILSRRGG------IPRLKRKK  129 (167)
Q Consensus        80 --------~~~~--------~~~lv~e~~~~g~L~~~i~~---~~~~-~~~~~~----~~~~i~~~------l~~~h~~~  129 (167)
                              ....        +.+++++-..+ ||.+++.-   .... ......    .-.|++..      ...+|.|+
T Consensus        93 i~~~~~~~~~~~~~~~~~v~n~~~l~P~~~~-dL~~~~~~l~~~~~~~~~l~~~arl~lT~Q~I~lvA~Lh~~GlVHgdi  171 (288)
T PF14531_consen   93 IPGKPPFFERGPGQSIYWVLNRFLLMPRAQG-DLQDLVEALFSRAQTHSPLAFAARLSLTVQMIRLVANLHSYGLVHGDI  171 (288)
T ss_dssp             ETTS-SEEEECETTEEEEEESEEEEEE--SE-EHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEEEST-
T ss_pred             EcCCCcceecCCCCccceeehhhhccchhhh-cHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHhhcceEeccc
Confidence                    1111        23566766644 88887663   1111 111111    11222322      23378999


Q ss_pred             cchhHHHHhhhccCCccccccchhh
Q 040049          130 KKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       130 ~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++|++   +.+++.+.++||+...
T Consensus       172 ~~~nfl---l~~~G~v~Lg~F~~~~  193 (288)
T PF14531_consen  172 KPENFL---LDQDGGVFLGDFSSLV  193 (288)
T ss_dssp             SGGGEE---E-TTS-EEE--GGGEE
T ss_pred             ceeeEE---EcCCCCEEEcChHHHe
Confidence            999999   8999999999998754

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.69  E-value=5.3e-05  Score=58.00  Aligned_cols=135  Identities=16%  Similarity=0.107  Sum_probs=99.1

Q ss_pred             Ccccceecc--cCceeEEEEEe---CCCcEEEEEe--ccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceE
Q 040049           16 LNVNIVLGQ--GGQGTVHKGML---ADERIVAVKK--SKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        16 ~~~~~~ig~--g~~g~v~~~~~---~~~~~~avk~--~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~l   87 (167)
                      +....-+|.  |.+|.+|.+.-   .++..+|+|.  +....+.....-.+|+.....++ |++.++.+..|.+.+..++
T Consensus       116 ~~~~~~~g~~~g~~~s~~~~~~~~~~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i~~~~~~v~~~~~~e~~~~lfi  195 (524)
T KOG0601|consen  116 FPISSRTGSLPGSKGSVFKSRCTNSESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKIDSHENPVRDSPAWEGSGILFI  195 (524)
T ss_pred             cccccccccCCCCCceeecccCCcccCCcccccccccCCCCCccccccccchhhcccccCccccccccCcccccCCccee
Confidence            344567888  99999998763   3577888886  33333344444556777667775 8999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHc----Cchhh------hhcccchhHHHHhhhcc-CCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRG----GIPRL------KRKKKKNKIWKQQLLKG-LAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~----~l~~~------h~~~~~~~~~~~~~~~~-~~~~l~df~~~~  154 (167)
                      -+|.|. .+|.++......  +....|...+....    |+.++      |.++++.|++   +..+ ...+++||++-.
T Consensus       196 qtE~~~-~sl~~~~~~~~~~~p~~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~---~~~~~~s~~~~df~~v~  271 (524)
T KOG0601|consen  196 QTELCG-ESLQSYCHTPCNFLPDNLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIF---TTSDWTSCKLTDFGLVS  271 (524)
T ss_pred             eecccc-chhHHhhhcccccCCchhhhhHHhhhhhcccccccccCCCcccccccchhhee---cccccceeecCCcceeE
Confidence            999985 577777665432  55677777777766    88774      5789999999   7777 677778888643

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=5.4e-05  Score=57.93  Aligned_cols=139  Identities=12%  Similarity=-0.006  Sum_probs=93.7

Q ss_pred             hcCCcccceecccCceeEEEEE-e-CCCcEEEEEeccCCCcccHH--HHHHHHHHHhcC-CCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-L-ADERIVAVKKSKVVGKGKLD--EFINKVVILSQI-NYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~-~~~~~~avk~~~~~~~~~~~--~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+|..+..||.+.|+.++.+. . .++..+++|.+.........  .-+.|+-+...+ .|.+.+.+...|......|+
T Consensus       264 ~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~ke~~~~l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~~~r~~~i  343 (524)
T KOG0601|consen  264 LTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAKELLNGLATFASDIFSLGEVILEAILGSHLPSVGKNSSWSQLRQGYI  343 (524)
T ss_pred             cCCcceeEEccCCccccceeeeecCCCCceEeChhhhccccchHhhhcchhhhhHhhHhhcccccCCCCCCccccccccC
Confidence            4578889999999999998876 3 46778888865443222222  223455555554 47778888777777777779


Q ss_pred             EEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~  154 (167)
                      -.|||.++++...+.-.. ......+....+++.++.+      +|.|+++.||+   +... +..++.||+.+.
T Consensus       344 p~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~---i~~~~~~~~~~~~~~~t  415 (524)
T KOG0601|consen  344 PLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNIL---ISNDGFFSKLGDFGCWT  415 (524)
T ss_pred             chhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhccccccccee---eccchhhhhcccccccc
Confidence            999999988766553222 1334455556666666654      67899999998   5542 566667777653

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=97.62  E-value=0.00018  Score=50.78  Aligned_cols=143  Identities=15%  Similarity=0.053  Sum_probs=89.8

Q ss_pred             CCcccceecccCceeEEEEEeCCCcEEEEEeccCCC------------------cc----cHHHHHHHHHHHhcCCCC--
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG------------------KG----KLDEFINKVVILSQINYR--   70 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~------------------~~----~~~~~~~e~~~~~~l~h~--   70 (167)
                      -..+...||-|.=|.||.|..+.|.++++|.-+...                  .+    .+....+|...|+++...  
T Consensus        92 ve~iG~~IGvGKEsdVY~~~~~~g~~~~vKfHR~GrtsFrkvk~~R~y~~~~~h~sWl~~sRl~A~rEf~~L~~L~~~G~  171 (304)
T COG0478          92 VEAIGTKIGVGKESDVYVAIDPKGRKVAVKFHRLGRTSFRKVKRNRDYLADKEHGSWLYVSRLAAEREFEALQRLYPEGV  171 (304)
T ss_pred             HHhhccccccCccceEEEEECCCCCEEEEEEeecCchhhhhhcchhhhhccccCcchhhhHHHHHHHHHHHHHHhhhcCC
Confidence            345668899999999999998889999999432210                  01    123467888888888643  


Q ss_pred             ceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHH---HHcCchhhhhcccchhHHHHhhhccCCccc
Q 040049           71 NVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILS---RRGGIPRLKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        71 ~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~---i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                      .+...++    -+.-.+|||+.+|-.|...-- ...+.......+++   .+-...++|.|+..-||+   +.+++.+.+
T Consensus       172 ~VP~P~~----~nRHaVvMe~ieG~eL~~~r~-~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIl---V~~dg~~~v  243 (304)
T COG0478         172 KVPKPIA----WNRHAVVMEYIEGVELYRLRL-DVENPDEILDKILEEVRKAYRRGIVHGDLSEFNIL---VTEDGDIVV  243 (304)
T ss_pred             CCCCccc----cccceeeeehcccceeecccC-cccCHHHHHHHHHHHHHHHHHcCccccCCchheEE---EecCCCEEE
Confidence            4444332    356789999998865543321 11122222223332   333567799999999999   777767777


Q ss_pred             cccchhhh-----hhhhhhhhhc
Q 040049          148 KKFEEEKW-----RHTVLKRKEN  165 (167)
Q Consensus       148 ~df~~~~~-----~~~i~hr~~~  165 (167)
                      .||=.+--     ...+..||.+
T Consensus       244 IDwPQ~v~~~hp~a~e~l~RDv~  266 (304)
T COG0478         244 IDWPQAVPISHPDAEELLERDVE  266 (304)
T ss_pred             EeCcccccCCCCCHHHHHHhHHH
Confidence            67654321     1256666654

>PF10707 YrbL-PhoP_reg: PhoP regulatory network protein YrbL; InterPro: IPR019647 This entry represents proteins that are activated by the protein PhoP

Probab=97.50  E-value=0.00062  Score=46.23  Aligned_cols=134  Identities=16%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCC----------------cccHHHHHHHHHHHhcCC------CCceeeee
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVG----------------KGKLDEFINKVVILSQIN------YRNVVKLL   76 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~----------------~~~~~~~~~e~~~~~~l~------h~~i~~l~   76 (167)
                      ...||+|+.-.||...  .....++|......                ........+|+.....+.      +..|.+++
T Consensus         6 ~~~i~~G~~R~cy~HP--~dp~~cIKV~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~E~~~y~~l~~~~~~~~~~i~r~~   83 (199)
T PF10707_consen    6 SDLIAQGGERDCYQHP--DDPNLCIKVMRPDRGERRRPFKRWLKRLRPKSRYRQNRRELRYYKQLSLRRGVDWSHIPRFY   83 (199)
T ss_pred             CcccccCCCceEEECC--CCCCeEEEEEccccccccccchhHHHhhcccchhHHHHHHHHHHHHHhhccCCcccccccEe
Confidence            4578999998888653  44556777765443                122345666665555444      78899999


Q ss_pred             eeeecCCcceEEEecCC------CCCHHHHHhhcCcchH--hhHHHHHHHHcCchhhhhcccchhHHHHhhhccC-Cccc
Q 040049           77 GCCLETEVPLLVYEYIP------NGNLSDYLHEQNEDFV--KDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGL-APKR  147 (167)
Q Consensus        77 ~~~~~~~~~~lv~e~~~------~g~L~~~i~~~~~~~~--~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~-~~~l  147 (167)
                      |+..++-...+|+|...      ..+|.+++++......  .......+.+.....+..|+++.||++.+...+. .+.+
T Consensus        84 G~veT~~G~Glv~e~I~d~dG~~s~TL~~~l~~~~~~~~~~~~L~~f~~~l~~~~Iv~~dl~~~NIv~~~~~~~~~~lvl  163 (199)
T PF10707_consen   84 GFVETNLGLGLVVELIRDADGNISPTLEDYLKEGGLTEELRQALDEFKRYLLDHHIVIRDLNPHNIVVQRRDSGEFRLVL  163 (199)
T ss_pred             EEEecCCceEEEEEEEECCCCCcCccHHHHHHcCCccHHHHHHHHHHHHHHHHcCCeecCCCcccEEEEecCCCceEEEE
Confidence            99999998899998753      3378888865543221  1112233334444557789999999866555554 3434


Q ss_pred             cc-cchhh
Q 040049          148 KK-FEEEK  154 (167)
Q Consensus       148 ~d-f~~~~  154 (167)
                      .| ||...
T Consensus       164 IDG~G~~~  171 (199)
T PF10707_consen  164 IDGLGEKE  171 (199)
T ss_pred             EeCCCCcc
Confidence            34 55443

PhoP controls the expression of a large number of genes that mediate adaptation to low Mg2+ environments and/or virulence in several bacterial species. YbrL is proposed to be acting in a loop activity with PhoP and PrmA analogous to the multi-component loop in Salmonella sp., where the PhoP-dependent PmrD protein activates the regulatory protein PmrA, and the activated PmrA then represses transcription from the PmrD promoter which harbours binding sites for both the PhoP and PmrA proteins. Expression of YrbL is induced in low Mg2+ in a PhoP-dependent fashion and repressed by Fe3+ in a PmrA-dependent manner [].

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.50  E-value=0.0013  Score=46.87  Aligned_cols=124  Identities=10%  Similarity=-0.035  Sum_probs=69.8

Q ss_pred             EEEEEeCCCcEEEEEeccCCCc-----------ccHHHHHHHHHHHhcCCCCce--eeeeeeeec-----CCcceEEEec
Q 040049           30 VHKGMLADERIVAVKKSKVVGK-----------GKLDEFINKVVILSQINYRNV--VKLLGCCLE-----TEVPLLVYEY   91 (167)
Q Consensus        30 v~~~~~~~~~~~avk~~~~~~~-----------~~~~~~~~e~~~~~~l~h~~i--~~l~~~~~~-----~~~~~lv~e~   91 (167)
                      |.+... .|+.+.+|......-           .-...+.+|.+.+..+...+|  ++...+.+.     ....++|+|+
T Consensus        38 vvr~~~-~g~~~~vKr~~~~~~~~~~k~l~~~~~p~~~a~rE~~~l~~L~~~GIptP~pVa~~e~~~~~~~~~s~LVte~  116 (268)
T PRK15123         38 TLRFEL-AGKSYFLKWHRGTGWGEIFKNLLSLRMPVLGADREWRAIHRLHEVGVDTMTGVAFGERGSNPATRTSFIITED  116 (268)
T ss_pred             EEEEEE-CCEEEEEEEecCCcHHHHhhhhcccccccHHHHHHHHHHHHHHHcCCCCCCeeEEEEecCCCccceeEEEEee
Confidence            455544 567888885432210           011146788887776633233  333444432     2347899999


Q ss_pred             CCCC-CHHHHHhhcC---cchHhhHHHHHHHHcCc------hhhhhcccchhHHHHhh----hccCCccccccchhh
Q 040049           92 IPNG-NLSDYLHEQN---EDFVKDVGFILSRRGGI------PRLKRKKKKNKIWKQQL----LKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g-~L~~~i~~~~---~~~~~~~~~~~~i~~~l------~~~h~~~~~~~~~~~~~----~~~~~~~l~df~~~~  154 (167)
                      +++. +|.+++.+..   .........+.+++..+      ...|.|+++.||++..-    ..+..+.++||+.++
T Consensus       117 l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LIDl~r~~  193 (268)
T PRK15123        117 LAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVIDLHRAQ  193 (268)
T ss_pred             CCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEEECCccc
Confidence            9885 7888876421   12222222233333333      34789999999993310    113566778999775

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=97.46  E-value=0.00053  Score=47.56  Aligned_cols=72  Identities=13%  Similarity=0.032  Sum_probs=50.6

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc--eeeeeeeeecCCcceEEEecCCCCC
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN--VVKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~--i~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      .++++|..+.+|+.   .+..+++|......  ......+|.+.+..+..-+  +.+.+.+....+...++||+++|.+
T Consensus         7 ~~i~~G~t~~~y~~---~~~~~VlR~~~~~~--~~~~i~~E~~~l~~l~~~glpvP~~~~~~~~~~~~glv~e~i~G~~   80 (226)
T TIGR02172         7 TQTGEGGNGESYTH---KTGKWMLKLYNPGF--DKETIKREFDASRKVFSLGIPTPHPFDLVEDGGRLGLIYELIVGKR   80 (226)
T ss_pred             eeecCCCCcceeEe---cCCCEEEEeCCCCC--CHHHHHHHHHHHHHHHHcCCCCCceEEEEecCCeeeeeeeecCCcc
Confidence            57899999999974   24456778765322  3345678898888775333  3566777666777789999998853

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=97.44  E-value=0.00068  Score=45.01  Aligned_cols=79  Identities=19%  Similarity=0.154  Sum_probs=55.5

Q ss_pred             cccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCcee-eeeeeeecCCcceEEEecCCCC
Q 040049           17 NVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV-KLLGCCLETEVPLLVYEYIPNG   95 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~-~l~~~~~~~~~~~lv~e~~~~g   95 (167)
                      ...+.|++|.+|.||.+.+ .+..+++|.-..  ++.+..+..|++++..+...++. +++.+-    ..++.|||..|-
T Consensus        25 ~v~~~L~KG~~s~Vyl~~~-~~~~~a~Kvrr~--ds~r~~l~kEakiLeil~g~~~~p~vy~yg----~~~i~me~i~G~   97 (201)
T COG2112          25 RVEKELAKGTTSVVYLGEW-RGGEVALKVRRR--DSPRRNLEKEAKILEILAGEGVTPEVYFYG----EDFIRMEYIDGR   97 (201)
T ss_pred             hhhhhhhcccccEEEEeec-cCceEEEEEecC--CcchhhHHHHHHHHHHhhhcCCCceEEEec----hhhhhhhhhcCc
Confidence            4456799999999999987 455788886542  33456788999999988765554 333332    233559999887


Q ss_pred             CHHHHHh
Q 040049           96 NLSDYLH  102 (167)
Q Consensus        96 ~L~~~i~  102 (167)
                      .|.+.-.
T Consensus        98 ~L~~~~~  104 (201)
T COG2112          98 PLGKLEI  104 (201)
T ss_pred             chhhhhh
Confidence            8766544

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=97.27  E-value=0.0002  Score=47.33  Aligned_cols=56  Identities=18%  Similarity=0.047  Sum_probs=45.8

Q ss_pred             CCHHHHHhhcC--cchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQN--EDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|.+++....  .+....+..+.+++.|+.|+|..-|+.|++   +..+..+++  ||.++.
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~kp~Nil---~~~~~~~~~--fG~~~~   58 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQAKSGNIL---LTWDGLLKL--DGSVAF   58 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCCcccEe---EcCccceee--ccceEe
Confidence            68999998643  356677788899999999999999999999   777777777  888764

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=97.17  E-value=0.00038  Score=57.16  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=69.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|..++.+..|++|.||.++++ +.+.+|+|. ...+     -+.+-  ++.....|.               .|  
T Consensus        81 ~e~df~~IklisngAygavylvrh~~trqrfa~ki-Nkq~-----lilRn--ilt~a~npf---------------vv--  135 (1205)
T KOG0606|consen   81 SESDFNTIKLISNGAYGAVYLVRHKETRQRFAMKI-NKQN-----LILRN--ILTFAGNPF---------------VV--  135 (1205)
T ss_pred             CccccceeEeeccCCCCceeeeeccccccchhhcc-cccc-----hhhhc--cccccCCcc---------------ee--
Confidence            3468999999999999999999853 566777742 2110     00000  222223332               22  


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                          ||-...++.-+. .+..-...++.++....+|+|++++|.+   +..-+..|++|||+.+
T Consensus       136 ----gDc~tllk~~g~-lPvdmvla~Eylh~ygivhrdlkpdnll---IT~mGhiKlTDfgLsk  191 (1205)
T KOG0606|consen  136 ----GDCATLLKNIGP-LPVDMVLAVEYLHSYGIVHRDLKPDNLL---ITSMGHIKLTDFGLSK  191 (1205)
T ss_pred             ----chhhhhcccCCC-CcchhhHHhHhhccCCeecCCCCCCcce---eeecccccccchhhhh
Confidence                354445444321 1222233455566667789999999999   7777899999999988

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=9.4e-05  Score=56.07  Aligned_cols=69  Identities=12%  Similarity=0.126  Sum_probs=52.2

Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhH----HHHHHHHcCchh---hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDV----GFILSRRGGIPR---LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~----~~~~~i~~~l~~---~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .++|+.|++|...+|.+|+.........++    ..+.+++.++.|   +|+|+++.||+   ...+...+|.|||+.-
T Consensus       329 ~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~yk~~ihrdlkp~nif---~~~d~q~kIgDFgl~t  404 (516)
T KOG1033|consen  329 VYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEYKGLIHRDLKPSNIF---FSDDDQLKIGDFGLVT  404 (516)
T ss_pred             cchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhhccchhhhccccccc---cccchhhhhhhhhhee
Confidence            358899999999999999986544333333    445566666654   89999999999   6666678999999854

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.06  E-value=0.0046  Score=42.65  Aligned_cols=137  Identities=11%  Similarity=0.073  Sum_probs=75.2

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccH------------HHHHHHHHHHhcCCCCceeeee---
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKL------------DEFINKVVILSQINYRNVVKLL---   76 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~------------~~~~~e~~~~~~l~h~~i~~l~---   76 (167)
                      ..++|...+.+.......|.+-.. ++..+++|.........-            ..+......+....-.....++   
T Consensus        29 ~~~~~~~~kv~k~~~r~~ValIei-~~~kyIlK~pr~~~~r~er~~~sf~kg~~~~~l~~~~~~i~~~g~~~~~~~yl~~  107 (229)
T PF06176_consen   29 LDNNYKIIKVFKNTKRNYVALIEI-DGKKYILKEPREENRRPERRFKSFFKGSEYSRLINNTDKIRNEGFTEPADPYLAA  107 (229)
T ss_pred             HhCCceEEEeecCCCccEEEEEEE-CCcEEEEeccchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHcCccccccceeee
Confidence            346777777777776666665554 578888887654322111            1122222222222212222212   


Q ss_pred             --eeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhhcccchhHHHHhhhccCCccccccchhh
Q 040049           77 --GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        77 --~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                        -.+......++++||++|..|.+...-. ..........+.-++...+.|.|..|+|++   +.++. +.+.|++..+
T Consensus       108 ekk~~~~~~~~~ll~EYIeG~~l~d~~~i~-e~~~~ki~~~ikqlH~~G~~HGD~hpgNFl---v~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  108 EKKIFRYTSSYVLLMEYIEGVELNDIEDID-EDLAEKIVEAIKQLHKHGFYHGDPHPGNFL---VSNNG-IRIIDTQGKR  182 (229)
T ss_pred             eeeeccceeEEEEEEEEecCeecccchhcC-HHHHHHHHHHHHHHHHcCCccCCCCcCcEE---EECCc-EEEEECcccc
Confidence              2222334567899999998776543211 011111223344556667789999999987   55544 5566998765

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>PRK10593 hypothetical protein; Provisional

Probab=96.37  E-value=0.046  Score=39.61  Aligned_cols=81  Identities=7%  Similarity=-0.039  Sum_probs=55.3

Q ss_pred             CcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCC---Cceeeeeeeeec---CCcceEEE
Q 040049           16 LNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINY---RNVVKLLGCCLE---TEVPLLVY   89 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h---~~i~~l~~~~~~---~~~~~lv~   89 (167)
                      ..-.+.|+.|..+.+|.....++ .+.+|..+.  ......+..|...++.+..   ..+.++++.+..   .+..++||
T Consensus        16 ~~~~~~i~~G~~~~vy~~~~~~~-~~~~k~~~~--~~~~~~~~~Ea~~L~~L~~~~~vpVP~V~~~~~~~~~~g~~~LVm   92 (297)
T PRK10593         16 LSRVECISEQPYAALWALYDSQG-NPMPLMARS--FSTPGVAQQEAWKLSMLARSGTVRMPTVYGVMTHEQSPGPDVLLL   92 (297)
T ss_pred             hheeeecCCccceeEEEEEcCCC-CEEEEEecc--cccchHHHHHHHHHHHHccCCCCCcCcEEEEeccCCcCCCeEEEE
Confidence            34456799999999998875445 355565432  1123577788888887742   356677776643   35689999


Q ss_pred             ecCCCCCHHH
Q 040049           90 EYIPNGNLSD   99 (167)
Q Consensus        90 e~~~~g~L~~   99 (167)
                      |+++|.++.+
T Consensus        93 E~i~G~~~~~  102 (297)
T PRK10593         93 ERLRGVSVEA  102 (297)
T ss_pred             eccCCEecCC
Confidence            9999987754

>PLN02876 acyl-CoA dehydrogenase

Probab=96.25  E-value=0.044  Score=45.32  Aligned_cols=108  Identities=10%  Similarity=0.102  Sum_probs=65.0

Q ss_pred             cceecccCceeEEEEEeCCC---cEEEEEeccCCC-cccHHHHHHHHHHHhcCC-CCce--eeeeeeeecC---CcceEE
Q 040049           19 NIVLGQGGQGTVHKGMLADE---RIVAVKKSKVVG-KGKLDEFINKVVILSQIN-YRNV--VKLLGCCLET---EVPLLV   88 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~---~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~-h~~i--~~l~~~~~~~---~~~~lv   88 (167)
                      +..++.|.+..+|......+   ..+++|+..... ......+.+|.++++.+. |+++  .+++.++.+.   +..|+|
T Consensus        43 v~~l~gG~sn~ty~l~~~~~~~~~~~VLR~~p~~~~~~~~~~~~rE~~~l~~L~~~~~vpVP~v~~~~~d~~v~G~~flV  122 (822)
T PLN02876         43 VSQFGHGQSNPTFLLEVGNGGSVKRYVLRKKPPGKLLQSAHAVEREYQVLRALGEHTDVPVPKVYCLCTDASVIGTAFYI  122 (822)
T ss_pred             EEEeCCCCcCceEEEEECCCCcceeEEEEeCCCCccCccHHHHHHHHHHHHHHhhcCCCCCCcEEEEecCCCcCCCceEE
Confidence            56788998999998775433   356777654322 123356789999999885 5654  6667776554   457899


Q ss_pred             EecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhh
Q 040049           89 YEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKR  127 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~  127 (167)
                      |||++|..+.+..- .............+++..++.+|.
T Consensus       123 ME~v~G~~~~~~~~-~~~~~~~r~~l~~~l~~~La~LH~  160 (822)
T PLN02876        123 MEYLEGRIFVDPKL-PGVAPERRRAIYRATAKVLAALHS  160 (822)
T ss_pred             EEecCCcccCCccC-CCCCHHHHHHHHHHHHHHHHHHhC
Confidence            99998854332100 000111222334456666666664

>PF01636 APH: Phosphotransferase enzyme family This family is part of the larger protein kinase superfamily

Probab=96.18  E-value=0.062  Score=36.80  Aligned_cols=78  Identities=22%  Similarity=0.228  Sum_probs=52.3

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCC--ceeeeeeeee---cCCcceEEEecCC
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYR--NVVKLLGCCL---ETEVPLLVYEYIP   93 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~--~i~~l~~~~~---~~~~~~lv~e~~~   93 (167)
                      ++.++.|..+.+|.....+ ..+++|.....  .....+..|..++..+...  .+..++....   .....++++++++
T Consensus         2 i~~l~~G~~n~~~~v~~~~-~~~vlK~~~~~--~~~~~~~~e~~~~~~l~~~~~pvP~~~~~~~~~~~~~~~~~~~~~i~   78 (239)
T PF01636_consen    2 IRPLSGGFSNRVYRVTTDD-GRYVLKFYRPP--DAAERLRREAAVLRQLAEHGIPVPRVLAFDTSDEFNGFPYLLMEYIP   78 (239)
T ss_dssp             EEEEEESSSSEEEEEEETT-SEEEEEEESSH--HHHHHHHHHHHHHHHHHHTTSBS--EEEEEEETEETSEEEEEEEEES
T ss_pred             CccCCCCCeeeEEEEEECC-cEEEEEEeCCC--CCHHHHHHHHHHHHHHHhcCCCCceEEeecccccccccceEEEEEec
Confidence            3678999999999998655 58888876533  3445677787777776422  2445555332   2334689999999


Q ss_pred             CCCHHH
Q 040049           94 NGNLSD   99 (167)
Q Consensus        94 ~g~L~~   99 (167)
                      |.++..
T Consensus        79 g~~~~~   84 (239)
T PF01636_consen   79 GRPLDD   84 (239)
T ss_dssp             SEEHHH
T ss_pred             cccccc
Confidence            987766

; InterPro: IPR002575 This entry consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include:- aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation []. The proteins are found in a range of taxonomic groups.; PDB: 2PPQ_A 2Q83_B 3TDV_B 3TDW_A 3I0O_A 3I0Q_A 3I1A_B 3Q2M_A 3HAV_C 2PUI_B ....

>PF13095 FTA2: Kinetochore Sim4 complex subunit FTA2

Probab=96.08  E-value=0.088  Score=35.96  Aligned_cols=65  Identities=26%  Similarity=0.329  Sum_probs=47.2

Q ss_pred             cCCcccceecccCc-eeEEEEEeCCCcEEEEEeccC---CCc------------------ccHHHHHHHHHHHhcCC---
Q 040049           14 DHLNVNIVLGQGGQ-GTVHKGMLADERIVAVKKSKV---VGK------------------GKLDEFINKVVILSQIN---   68 (167)
Q Consensus        14 ~~~~~~~~ig~g~~-g~v~~~~~~~~~~~avk~~~~---~~~------------------~~~~~~~~e~~~~~~l~---   68 (167)
                      .+++..+.||.|.- |.|+++.. +|+.+|+|.+..   ..+                  .....|..|.+...+++   
T Consensus        37 ~~I~flefLg~g~~~~~V~kv~I-~g~~YALKlf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~PF~~ECRAfgRLke~~  115 (207)
T PF13095_consen   37 DDIEFLEFLGHGSHDGYVFKVEI-DGRIYALKLFRFWDYTEPDYTRERFAGHETSLSTPAHYADPFNCECRAFGRLKEAG  115 (207)
T ss_pred             CcEeeeeecCCCCceeEEEEEEE-CCeEEEEEEeeccccCCCccccccccccccccchhhhhcChHHHHHHhhHHHHhcc
Confidence            67888899999999 99999986 678999998322   110                  11234778888777764   


Q ss_pred             CCce--eeeeeee
Q 040049           69 YRNV--VKLLGCC   79 (167)
Q Consensus        69 h~~i--~~l~~~~   79 (167)
                      +.++  ++.+||.
T Consensus       116 ~e~~~Avkc~Gyl  128 (207)
T PF13095_consen  116 REGLWAVKCHGYL  128 (207)
T ss_pred             ccCceEEEeeEEE
Confidence            4455  8888887

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=96.07  E-value=0.0015  Score=47.50  Aligned_cols=81  Identities=19%  Similarity=0.226  Sum_probs=58.1

Q ss_pred             HhcCCCCceeeeeeeeecCC-----cceEEEecCCCCCHHHHHhhcCc----chHhhHHH-HHHHHcCchhhh-------
Q 040049           64 LSQINYRNVVKLLGCCLETE-----VPLLVYEYIPNGNLSDYLHEQNE----DFVKDVGF-ILSRRGGIPRLK-------  126 (167)
Q Consensus        64 ~~~l~h~~i~~l~~~~~~~~-----~~~lv~e~~~~g~L~~~i~~~~~----~~~~~~~~-~~~i~~~l~~~h-------  126 (167)
                      +-.+.|.||++++.+|.+..     ...++.||+..|++.++++....    -+...|.. ..+|..+|.|+|       
T Consensus       121 llqlvHsnlvkfH~yw~d~K~~e~~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~Ppii  200 (458)
T KOG1266|consen  121 LLQLVHSNLVKFHKYWTDKKYEEKPRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPII  200 (458)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccc
Confidence            33457999999999997653     46789999999999999997543    34556654 678889998865       


Q ss_pred             -hcccchhHHHHhhhccCCccc
Q 040049          127 -RKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus       127 -~~~~~~~~~~~~~~~~~~~~l  147 (167)
                       .++....++   +..+..+++
T Consensus       201 hgnlTc~tif---iq~ngLIki  219 (458)
T KOG1266|consen  201 HGNLTCDTIF---IQHNGLIKI  219 (458)
T ss_pred             cCCcchhhee---ecCCceEEe
Confidence             455555555   445555555

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=95.97  E-value=0.019  Score=39.21  Aligned_cols=99  Identities=10%  Similarity=0.062  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHhcCCCCc--eeeeeeeeecCC----cceEEEecCCCC-CHHHHHhhcCc-chHhhHHHHHHH------Hc
Q 040049           55 DEFINKVVILSQINYRN--VVKLLGCCLETE----VPLLVYEYIPNG-NLSDYLHEQNE-DFVKDVGFILSR------RG  120 (167)
Q Consensus        55 ~~~~~e~~~~~~l~h~~--i~~l~~~~~~~~----~~~lv~e~~~~g-~L~~~i~~~~~-~~~~~~~~~~~i------~~  120 (167)
                      ....+|.+.+..+...+  .+..+++.....    ..++++|++++. +|.+++..... ........+.++      ++
T Consensus        56 ~ra~~E~~~~~~L~~~Gi~tP~pva~~~~r~~~~~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH  135 (206)
T PF06293_consen   56 SRAKREWRNLQRLREAGIPTPEPVAYGERRKGGGYRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLH  135 (206)
T ss_pred             hHHHHHHHHHHHHHHcCCCCCcEEEEEEEcCCCceeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHH
Confidence            45677777776664322  344455554432    357999999874 79888886221 111222222222      33


Q ss_pred             CchhhhhcccchhHHHHhhhccC---Cccccccchhhhh
Q 040049          121 GIPRLKRKKKKNKIWKQQLLKGL---APKRKKFEEEKWR  156 (167)
Q Consensus       121 ~l~~~h~~~~~~~~~~~~~~~~~---~~~l~df~~~~~~  156 (167)
                      .-...|.|+++.||+   +..+.   ...+.||+-++..
T Consensus       136 ~~gi~H~Dl~~~NIL---v~~~~~~~~~~lIDld~~~~~  171 (206)
T PF06293_consen  136 DAGIYHGDLNPSNIL---VDPDDGQYRFYLIDLDRMRFR  171 (206)
T ss_pred             HCcCCCCCCCcccEE---EeCCCCceeEEEEcchhceeC
Confidence            334578999999999   55544   5677799877643

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>PRK09902 hypothetical protein; Provisional

Probab=95.93  E-value=0.21  Score=34.39  Aligned_cols=128  Identities=11%  Similarity=0.071  Sum_probs=75.5

Q ss_pred             ecccCceeEEEEEeCCCcEEEEEeccC-C----C-cccHHHHHHHHHHHhcCCCCc--eeeeeeeee-cC----CcceEE
Q 040049           22 LGQGGQGTVHKGMLADERIVAVKKSKV-V----G-KGKLDEFINKVVILSQINYRN--VVKLLGCCL-ET----EVPLLV   88 (167)
Q Consensus        22 ig~g~~g~v~~~~~~~~~~~avk~~~~-~----~-~~~~~~~~~e~~~~~~l~h~~--i~~l~~~~~-~~----~~~~lv   88 (167)
                      -|.|+.+-|++... .|..+-+|.-.. .    . +.-...+.+|...+..+...+  +.+.. ++. ..    -..+||
T Consensus        26 ~~rgG~SgV~r~~~-~g~~~ylKrq~nhl~~s~r~P~g~ptf~rE~~~L~~L~~~GvPVP~pv-f~~~~k~~~~~rA~LV  103 (216)
T PRK09902         26 YRRNGMSGVQCVER-NGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIV-FGEAVKIEGEWRALLV  103 (216)
T ss_pred             cCCCCcceEEEEEe-CCcEEEEEeccCcccccccCCCCchHHHHHHHHHHHHHHcCCCCCccc-eeeeeccCCceEEEEE
Confidence            35588888888765 344677775331 1    1 223467889998888874322  33333 222 11    236799


Q ss_pred             EecCCC-CCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc--CCccccccchhh
Q 040049           89 YEYIPN-GNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG--LAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~-g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~--~~~~l~df~~~~  154 (167)
                      +|-++| -||.+++.+...   +.......+.+++..+..      .|+|+.+-||+   +..+  ..+.+.||.-++
T Consensus       104 Te~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIl---l~~~g~~~v~lIDlEk~r  178 (216)
T PRK09902        104 TEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIY---VKTEGKAEAGFLDLEKSR  178 (216)
T ss_pred             EEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhhee---ecCCCCeeEEEEEhhccc
Confidence            998864 489888866432   222222334444444443      57899999998   4423  347778887665

>PF03109 ABC1: ABC1 family; InterPro: IPR004147 This entry includes ABC1 from yeast [] and AarF from Escherichia coli []

Probab=95.61  E-value=0.0054  Score=38.14  Aligned_cols=43  Identities=26%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHh
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILS   65 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~   65 (167)
                      ..++.|+.|.||+|++.+|+.||+|...+.   ..+.+...+.++.
T Consensus        17 ~PlasASiaQVh~a~l~~g~~VaVKV~rP~---i~~~i~~Dl~~l~   59 (119)
T PF03109_consen   17 EPLASASIAQVHRARLKDGEEVAVKVQRPG---IEEQIEADLRILR   59 (119)
T ss_pred             chhhheehhhheeeeecccchhhhhhcchH---HHHHHHHHHHHHH
Confidence            679999999999999888999999986643   3334444444444

These proteins have a nuclear or mitochondrial subcellular location in eukaryotes. The exact molecular functions of these proteins is not clear, however yeast ABC1 suppresses a cytochrome b mRNA translation defect and is essential for the electron transfer in the bc 1 complex [] and E. coli AarF is required for ubiquinone production []. It has been suggested that members of the ABC1 family are novel chaperonins []. These proteins are unrelated to the ABC transporter proteins.

>cd05150 APH Aminoglycoside 3'-phosphotransferase (APH)

Probab=95.45  E-value=0.16  Score=35.46  Aligned_cols=76  Identities=12%  Similarity=-0.003  Sum_probs=49.6

Q ss_pred             eecccCc-eeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecCCCCCHH
Q 040049           21 VLGQGGQ-GTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPNGNLS   98 (167)
Q Consensus        21 ~ig~g~~-g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~   98 (167)
                      .|..|.. ..||+.... +..+.+|......   .....+|++++..+. +--+.+++++....+..++++++++|.++.
T Consensus         5 ~~~~g~~~~~v~~~~~~-~~~~~vk~~~~~~---~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~lv~e~i~G~~l~   80 (244)
T cd05150           5 RVTEGQSGATVYRLDGK-NPGLYLKIAPSGP---TYELEREAERLRWLAGKLPVPEVIDYGSDDGRAWLLTSAVPGVPAA   80 (244)
T ss_pred             ecCCCCCcCeEEEEcCC-CCcEEEEecCCCc---ccchHHHHHHHHHHHhcCCCCeEEEEEecCCccEEEEEeeCCccHh
Confidence            3445554 678888643 4677778764332   234567887777763 333556677666666788999999998776


Q ss_pred             HH
Q 040049           99 DY  100 (167)
Q Consensus        99 ~~  100 (167)
                      ..
T Consensus        81 ~~   82 (244)
T cd05150          81 AL   82 (244)
T ss_pred             Hh
Confidence            44

The APH subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). APH catalyzes the transfer of the gamma-phosphoryl group from ATP to aminoglycoside antibiotics such as kanamycin, streptomycin, neomycin, and gentamicin, among others. The aminoglycoside antibiotics target the 30S ribosome and promote miscoding, leading to the production of defective proteins which insert into the bacterial membrane, resulting in membrane damage and the ultimate demise of the bacterium. Phosphorylation of the aminoglycoside antibiotics results in their inactivation, leading to bacterial antibiotic resistance. The APH gene is found on transposons and plasmids and is thought to have originated as a self-defense mechanism used by microorganisms that produce the antibio

>TIGR02721 ycfN_thiK thiamine kinase

Probab=95.21  E-value=0.092  Score=37.01  Aligned_cols=72  Identities=13%  Similarity=0.020  Sum_probs=40.3

Q ss_pred             ecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-eeeeeeeecCCcceEEEecCCCCCHH
Q 040049           22 LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-VKLLGCCLETEVPLLVYEYIPNGNLS   98 (167)
Q Consensus        22 ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-~~l~~~~~~~~~~~lv~e~~~~g~L~   98 (167)
                      +..|-...+|+.. .++..+++|..........-...+|.++++.+...++ .+++...  .  -++|+||++|..+.
T Consensus         4 ~~~G~tn~~y~~~-~~~~~~vlR~~~~~~~~~~~~r~~E~~~l~~l~~~g~~P~~i~~~--~--~~~v~e~i~G~~~~   76 (256)
T TIGR02721         4 LSGGLTNRSWRIE-HPGISFVWRPQSPVCKALGVDRQREYQILQALSALGLAPKPILVN--E--HWLLVEWLEGEVIT   76 (256)
T ss_pred             CCCcCcCCeEEEE-eCCccEEEeeCCcccccccCcHHHHHHHHHHHHhcCCCCceEEEe--C--CEEEEEeccCcccc
Confidence            4556667788776 3566777876433222110124567777777653333 2333322  2  36899999886543

Members of this family are the ycfN gene product of Escherichia coli, now identified as the salvage enzyme thiamine kinase (thiK), and additional proteobacterial homologs taken to be orthologs with equivalent function.

>PRK09550 mtnK methylthioribose kinase; Reviewed

Probab=94.75  E-value=1.2  Score=33.95  Aligned_cols=76  Identities=20%  Similarity=0.158  Sum_probs=52.2

Q ss_pred             cceecccCceeEEEEEeCCC-cEEEEEeccCC----C---cccHHHHHHHHHHHhcCC---CCceeeeeeeeecCCcceE
Q 040049           19 NIVLGQGGQGTVHKGMLADE-RIVAVKKSKVV----G---KGKLDEFINKVVILSQIN---YRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~-~~~avk~~~~~----~---~~~~~~~~~e~~~~~~l~---h~~i~~l~~~~~~~~~~~l   87 (167)
                      .+.+|.|.+..||++...+| +.+++|...+.    .   +...++...|.+.+..+.   ...+++++.+  +.+..++
T Consensus        31 ~~elggGn~N~VyrV~~~~g~~svIVKqa~p~~r~~g~~wpl~~eR~~~Eae~L~~l~~~~p~~VPkV~~~--D~~~~~l  108 (401)
T PRK09550         31 AREIGDGNLNLVFRVSDTEGGKSVIVKQALPYVRVVGESWPLTLDRARIEAEALKIQAKYVPDLVPKVYHY--DEELAVT  108 (401)
T ss_pred             eeEcCCCceEEEEEEEeCCCCeEEEEEecCcccccccccccccHHHHHHHHHHHHHHHhhCCCCCCeEEEE--CCCCCEE
Confidence            36789999999999997665 57899974321    1   224566777888777752   2345555555  3455789


Q ss_pred             EEecCCCCC
Q 040049           88 VYEYIPNGN   96 (167)
Q Consensus        88 v~e~~~~g~   96 (167)
                      |||++++..
T Consensus       109 VME~L~~~~  117 (401)
T PRK09550        109 VMEDLSDHK  117 (401)
T ss_pred             EEecCCCcc
Confidence            999998754

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=94.63  E-value=0.11  Score=36.19  Aligned_cols=73  Identities=15%  Similarity=0.176  Sum_probs=41.5

Q ss_pred             ceecccCce-eEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCC---ceeeeeeeeecC---CcceEEEecC
Q 040049           20 IVLGQGGQG-TVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYR---NVVKLLGCCLET---EVPLLVYEYI   92 (167)
Q Consensus        20 ~~ig~g~~g-~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~---~i~~l~~~~~~~---~~~~lv~e~~   92 (167)
                      +.++.|+.. .||+.    +..+++|....  ......+.+|.+.+..+...   -+...++.....   +..+++|+++
T Consensus         3 ~~~~~gG~~n~vy~~----~~~~VlR~~~~--~~~~~~~~~E~~~l~~L~~~~~v~vP~~~~~~~~~~~~~~~~~l~~~i   76 (235)
T cd05155           3 EPVDSGGTDNATFRL----GDDMSVRLPSA--AGYAGQVRKEQRWLPRLAPHLPLPVPEPLGKGEPGEGYPWPWSVYRWL   76 (235)
T ss_pred             eeccCCCcccceEEc----CCceEEEcCCc--cchHHHHHHHHHHHHHHhccCCCCCCceeecCCCccCCCcceEEEEee
Confidence            456766665 47764    23466675442  22234678888888776421   223333333222   2357899999


Q ss_pred             CCCCHH
Q 040049           93 PNGNLS   98 (167)
Q Consensus        93 ~~g~L~   98 (167)
                      +|.++.
T Consensus        77 ~G~~l~   82 (235)
T cd05155          77 EGETAT   82 (235)
T ss_pred             cCCCCC
Confidence            886654

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=94.62  E-value=0.18  Score=35.63  Aligned_cols=126  Identities=13%  Similarity=0.022  Sum_probs=65.8

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcc-------------------cH-----HHHHHHHHHHhcCCCCc--ee
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG-------------------KL-----DEFINKVVILSQINYRN--VV   73 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~-------------------~~-----~~~~~e~~~~~~l~h~~--i~   73 (167)
                      ..|++|.=+.||.|...++..+|+|+.......                   ..     .....|.+-|.++...+  ..
T Consensus        54 g~istGKEA~Vy~a~~~~~~~~avKiyr~~t~~fk~~~~Yi~gd~Rf~~~~~~rr~lv~~W~~kEf~NL~R~~eAGVrvP  133 (268)
T COG1718          54 GCISTGKEANVYLAETGDGRYVAVKIYRTSTSEFKRIRRYIQGDPRFRNSRSNRRKLVFAWARKEFRNLKRAYEAGVRVP  133 (268)
T ss_pred             eeecCCcceEEEeeccCCCceEEEEEEehhhhhhhhHHHHHhcChhhhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            356677777899988667889999976443211                   11     11234555555442211  11


Q ss_pred             eeeeeeecCCcceEEEecCCCC-CHHHHHhhcCcc---hHhhHHHHHHH----HcCchhhhhcccchhHHHHhhhccCCc
Q 040049           74 KLLGCCLETEVPLLVYEYIPNG-NLSDYLHEQNED---FVKDVGFILSR----RGGIPRLKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        74 ~l~~~~~~~~~~~lv~e~~~~g-~L~~~i~~~~~~---~~~~~~~~~~i----~~~l~~~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      +-+.+.    .-.++|||+... .-.-.+++-...   ....+..+++-    ......+|.|+..=|++   +. +..+
T Consensus       134 ~Pi~~~----~nVLvMEfIg~~g~pAP~LkDv~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL---~~-~~~p  205 (268)
T COG1718         134 EPIAFR----NNVLVMEFIGDDGLPAPRLKDVPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNIL---VH-DGEP  205 (268)
T ss_pred             Cceeec----CCeEEEEeccCCCCCCCCcccCCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheE---EE-CCeE
Confidence            111111    235899998542 111122222111   12223333332    33345589999999998   55 5566


Q ss_pred             cccccchh
Q 040049          146 KRKKFEEE  153 (167)
Q Consensus       146 ~l~df~~~  153 (167)
                      .+.|++.|
T Consensus       206 ~iID~~Qa  213 (268)
T COG1718         206 YIIDVSQA  213 (268)
T ss_pred             EEEECccc
Confidence            66688864

>PRK05231 homoserine kinase; Provisional

Probab=94.13  E-value=0.37  Score=35.09  Aligned_cols=88  Identities=8%  Similarity=-0.004  Sum_probs=44.9

Q ss_pred             cHHHHHhhhcCCcc-----cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-----CCCceee
Q 040049            5 SAKELDKATDHLNV-----NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-----NYRNVVK   74 (167)
Q Consensus         5 ~~~~~~~~~~~~~~-----~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-----~h~~i~~   74 (167)
                      +.+++......|.+     .+.++.|....+|.....+| .+++|.......   .....+...+..+     .-|..+.
T Consensus         8 s~~~l~~~l~~y~~~~~~~~~~l~~G~~n~~y~v~t~~g-~~vLK~~~~~~~---~~l~~~~~~l~~L~~~glpvP~~i~   83 (319)
T PRK05231          8 SDDELAAFLAPYDLGELLSLKGIAEGIENSNFFLTTTQG-EYVLTLFERLTA---EDLPFFLGLMQHLAARGVPVPAPVA   83 (319)
T ss_pred             CHHHHHHHHHhcCCchhhccchhccccccceEEEEeCCC-cEEEEEeccCCh---HHhHHHHHHHHHHHHCCCCCCccee
Confidence            34455444445544     24456666677888775444 678887652122   2222333334333     2233232


Q ss_pred             ee-e--eeecCCcceEEEecCCCCC
Q 040049           75 LL-G--CCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        75 l~-~--~~~~~~~~~lv~e~~~~g~   96 (167)
                      -. |  +....+..+++++|++|..
T Consensus        84 ~~~G~~~~~~~g~~~~l~~~l~G~~  108 (319)
T PRK05231         84 RRDGAALGELAGKPAAIVTFLEGKW  108 (319)
T ss_pred             CCCCCEeeeeCCEEEEEEEecCCCC
Confidence            11 1  1122455789999998763

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=92.46  E-value=0.026  Score=43.34  Aligned_cols=71  Identities=20%  Similarity=0.329  Sum_probs=55.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      ...+++.....+|.|+||+|+.+... ++..++||.+...+. ......++++..+..+.|++++++...|..
T Consensus        46 r~a~~~e~~~~~~~~g~~~~~~~~n~~d~~~~avkritlkn~e~s~~rvl~~~~s~a~feh~g~~~~~ha~~~  118 (516)
T KOG1033|consen   46 REANDFEPGQCLGRGGFGVVFSAQNKADENKYAVKRITLKNREESRSRVLREVSSLAEFEHPGIKRYFHAWYE  118 (516)
T ss_pred             hhhccccccccccccCccccCCccccccchhhHHHHhcccchhhhhhhhhccccchhhhcccchhhheeceec
Confidence            34467888899999999999988743 455789998765543 344567888999999999999998776643

>PF03881 Fructosamin_kin: Fructosamine kinase; InterPro: IPR016477 Ketosamines derive from a non-enzymatic reaction between a sugar and a protein []

Probab=91.75  E-value=2  Score=31.13  Aligned_cols=76  Identities=18%  Similarity=0.145  Sum_probs=44.1

Q ss_pred             CcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC---CCCceeeeeeeeecCCcceEEEecC
Q 040049           16 LNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI---NYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      ..-.+.++.|....+|+.. .+++.+-+|.-....   ...+..|..-++.+   ..-.+++.+++....+..++++||+
T Consensus        19 i~~~~~v~GG~i~~a~~~~-~~~~~~FvK~~~~~~---~~~f~~Ea~gL~~L~~~~~~~vP~vi~~G~~~~~~fLlle~l   94 (288)
T PF03881_consen   19 ITSIEPVSGGDINEAYRLD-TDGGSYFVKVNSESG---RDMFEGEAEGLKALAEANPIRVPKVIAWGEYDDDAFLLLEFL   94 (288)
T ss_dssp             --EEEEE--SSSSEEEEEE-TTS-EEEEEEEEGGG---CCHHHHHHHHHHHHCHTTTSBS--EEEEEE-SSCCEEEEE--
T ss_pred             eeeeEecCCCChhheEEEE-CCCccEEEEecChhh---HHHHHHHHHHHHHHHhcCCCCCCeEEEEEeecCCceEEEEee
Confidence            3445678889999998877 567788888755222   23556677666655   3455678888887777789999998


Q ss_pred             CCC
Q 040049           93 PNG   95 (167)
Q Consensus        93 ~~g   95 (167)
                      +.+
T Consensus        95 ~~~   97 (288)
T PF03881_consen   95 EMG   97 (288)
T ss_dssp             ---
T ss_pred             cCC
Confidence            764

Ketosamine-3-kinases (KT3K), of which fructosamine-3-kinase (FN3K) is the best-known example, catalyse the phosphorylation of the ketosamine moiety of glycated proteins. The instability of a phosphorylated ketosamine leads to its degradation, and KT3K is thus thought to be involved in protein repair []. The function of the prokaryotic members of this group has not been established. However, several lines of evidence indicate that they may function as fructosamine-3-kinases (FN3K). First, they are similar to characterised FN3K from mouse and human. Second, the Escherichia coli members are found in close proximity on the genome to fructose-6-phosphate kinase (PfkB). Last, FN3K activity has been found in a Anacystis montana (Gloeocapsa montana Kutzing 1843) [], indicating such activity-directly demonstrated in eukaryotes-is nonetheless not confined to eukaryotes. This family includes eukaryotic fructosamine-3-kinase enzymes [] which may initiate a process leading to the deglycation of fructoselysine and of glycated proteins and in the phosphorylation of 1-deoxy-1-morpholinofructose, fructoselysine, fructoseglycine, fructose and glycated lysozyme. The family also includes bacterial members that have not been characterised but probably have a similar or identical function. For additional information please see [].; PDB: 3JR1_B 3F7W_A.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=91.49  E-value=0.34  Score=32.70  Aligned_cols=89  Identities=16%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             HHHHHHhcCCC-CceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHc----Cchhhh-------
Q 040049           59 NKVVILSQINY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRG----GIPRLK-------  126 (167)
Q Consensus        59 ~e~~~~~~l~h-~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~----~l~~~h-------  126 (167)
                      .|.-+++.+.+ +++++++|.|    .-+++.|+...+++.........-...+|..+..++.    .+..++       
T Consensus         8 ~E~lll~~l~~~~~~pk~lG~C----G~~~v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~   83 (188)
T PF12260_consen    8 NEPLLLQLLQGSEPFPKLLGSC----GRFYVVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFF   83 (188)
T ss_pred             cHHHHHHHcCCCCCCCCeeeEC----CCEEEEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcE
Confidence            57777888865 6899999999    2356889988666542200000112234444444443    333332       


Q ss_pred             --hcccchhHHHHhhhccCCccccccchhh
Q 040049          127 --RKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       127 --~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                        .|.++.|+-   +..+..+++.|....-
T Consensus        84 ~lcDv~~~nfg---v~~~~~lk~iDld~v~  110 (188)
T PF12260_consen   84 YLCDVSPDNFG---VNDDGRLKLIDLDDVF  110 (188)
T ss_pred             EEeecchHHeE---EeCCCcEEEEechhcc
Confidence              478888886   6666777877766543

Proteins in this uncharacterised family are described as transmembrane proteins.

>cd05157 ETNK_euk Ethanolamine kinase (ETNK) in eukaryotes

Probab=90.56  E-value=1.8  Score=29.86  Aligned_cols=74  Identities=18%  Similarity=0.135  Sum_probs=44.0

Q ss_pred             ceecccCceeEEEEEeCC--CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-eeeeeeeecCCcceEEEecCCCCC
Q 040049           20 IVLGQGGQGTVHKGMLAD--ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-VKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~--~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      +.+..|-...+|+....+  +..+++|......... -...+|+.++..+...++ ++++...  ++  .+++||++|.+
T Consensus         4 ~~l~gG~tN~~~~v~~~~~~~~~~vlR~~~~~~~~~-~d~~~E~~~~~~l~~~gl~P~v~~~~--~~--~~l~e~i~G~~   78 (235)
T cd05157           4 KRFTGGITNKLVKVSNKEDNQDAVLVRVYGNKTELI-IDRERELRIHKLLSKHGLAPKLYATF--QN--GLIYEFIPGRT   78 (235)
T ss_pred             EEcCCcccceEEEEEcCCCCCCeEEEEEccCCccce-ecHHHHHHHHHHHHhCCCCCeEEEEe--CC--cEEEEeeCCCc
Confidence            456777778899887543  5678888654322211 122357777777643333 3333332  22  47999999876


Q ss_pred             HH
Q 040049           97 LS   98 (167)
Q Consensus        97 L~   98 (167)
                      +.
T Consensus        79 l~   80 (235)
T cd05157          79 LE   80 (235)
T ss_pred             CC
Confidence            64

ETNK is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major phospholipid, phosphatidylethanolamine (PtdEtn). Unlike ChoK, ETNK shows specific activity for its substrate, and displays negligible activity towards N-methylated derivatives of Etn. The Drosophila ETNK is implicated in development and neuronal function. Mammals contain two ETNK proteins, ETNK1 and ETNK2. ETNK1 selectively increases Etn uptake and phosphorylation, as well as PtdEtn synthesis. ETNK2 is found primarily in the liver and reproductive tissues. It plays a critical role in regulating placental hemostasis to support late embryo

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=88.18  E-value=0.12  Score=43.39  Aligned_cols=138  Identities=15%  Similarity=0.111  Sum_probs=76.4

Q ss_pred             cCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +.+.+.+.+.+++++.+..+. ...|...+.+......   ..+.+....+-...-...+|-.+...-.+......++++
T Consensus       804 d~~~i~~p~qS~sp~ss~p~~pa~sgh~~~~~v~~~ap~i~~~~~~s~r~~s~~~i~p~~P~v~~~~~s~~~rsP~~L~~  883 (1205)
T KOG0606|consen  804 DGFEITKPSQSGSPSSSFPASPAGSGHTRPSKVHGLAPKIRTNDYESIRSKSNILITPRSPAVVRSFPSFPCRSPLPLVG  883 (1205)
T ss_pred             ccceecccccCCCCcccccCCccccccccchhhhccchhhccccccccCCccCccccCCCCceecccCCCCCCCCcchhh
Confidence            455666677788888877665 3334233333211110   000111111111111123344444433344567789999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|+.+++|...++..+. ........+..++.+..+      .|+++++.+.+   +-.....++++|+...
T Consensus       884 ~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l---~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  884 HYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLL---IAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             HHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchh---hcccCCcccCcccccc
Confidence            99999999999987663 222233334444444433      68899999998   5666777778887433

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=87.21  E-value=0.16  Score=40.05  Aligned_cols=33  Identities=27%  Similarity=0.460  Sum_probs=27.3

Q ss_pred             hcccchhHHHHhhhccCCccccccchhhhhhhhhhhhhc
Q 040049          127 RKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKEN  165 (167)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~~i~hr~~~  165 (167)
                      .++|...-|++||++|+     .|.|++ .+||+|||..
T Consensus       140 vn~kaik~W~RQILkGL-----~yLHs~-~PPIIHRDLK  172 (632)
T KOG0584|consen  140 VNIKAIKSWCRQILKGL-----VYLHSQ-DPPIIHRDLK  172 (632)
T ss_pred             CCHHHHHHHHHHHHHHh-----hhhhcC-CCCccccccc
Confidence            46777788999999988     788887 4799999964

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=87.10  E-value=0.32  Score=36.10  Aligned_cols=136  Identities=11%  Similarity=0.012  Sum_probs=82.9

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC------------------ccc----HHHHHHHHHHHh
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG------------------KGK----LDEFINKVVILS   65 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~------------------~~~----~~~~~~e~~~~~   65 (167)
                      ++.....-+.+.++||-|.=+.+|.+-...|.+.++|.-+...                  .++    +-...+|...|+
T Consensus        86 tL~~R~~v~svGnqIGVGKESDIY~v~d~~G~~~~lK~HRLGRtSFR~Vk~kRDY~r~r~~~sWlyLSRlaa~kEfafmk  165 (465)
T KOG2268|consen   86 TLSNRGSVESVGNQIGVGKESDIYVVADEEGNPLILKLHRLGRTSFRNVKNKRDYLRKRKSGSWLYLSRLAATKEFAFMK  165 (465)
T ss_pred             HHHhcchhhhhccccccccccceEEEecCCCCchhHHHHhhhhhhHHHhhhhhhhHhcCCccchhhhHHHHHHHHHHHHH
Confidence            3444444567888999999999999988788888888422210                  001    112355666666


Q ss_pred             cCC-CCc-eeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCch---hhhhcccchhHHHHhhh
Q 040049           66 QIN-YRN-VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIP---RLKRKKKKNKIWKQQLL  140 (167)
Q Consensus        66 ~l~-h~~-i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~---~~h~~~~~~~~~~~~~~  140 (167)
                      .+. |.. +++.+    +-+.-++|||++.|-.|.+.-+-  ...+.....++.++..++   .+|.|..--|++   +.
T Consensus       166 aL~e~gfpVPkpi----D~~RH~Vvmelv~g~Pl~~v~~v--~d~~~ly~~lm~~Iv~la~~GlIHgDFNEFNim---v~  236 (465)
T KOG2268|consen  166 ALYERGFPVPKPI----DHNRHCVVMELVDGYPLRQVRHV--EDPPTLYDDLMGLIVRLANHGLIHGDFNEFNIM---VK  236 (465)
T ss_pred             HHHHcCCCCCCcc----cccceeeHHHhhcccceeeeeec--CChHHHHHHHHHHHHHHHHcCceecccchheeE---Ee
Confidence            553 211 12222    22456789999888777654321  133344445666655554   489999999998   66


Q ss_pred             ccCCccccccch
Q 040049          141 KGLAPKRKKFEE  152 (167)
Q Consensus       141 ~~~~~~l~df~~  152 (167)
                      .+..++++||=.
T Consensus       237 dd~~i~vIDFPQ  248 (465)
T KOG2268|consen  237 DDDKIVVIDFPQ  248 (465)
T ss_pred             cCCCEEEeechH
Confidence            566666668753

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=86.48  E-value=0.15  Score=37.27  Aligned_cols=27  Identities=33%  Similarity=0.501  Sum_probs=20.6

Q ss_pred             hhHHHHhhhccCCccccccchhhhhhhhhhhhhcc
Q 040049          132 NKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENK  166 (167)
Q Consensus       132 ~~~~~~~~~~~~~~~l~df~~~~~~~~i~hr~~~~  166 (167)
                      ...+++|++.+.     +|+|+.   +|+|||..|
T Consensus       122 ik~~m~Qll~gl-----~~~H~~---~IlHRDLKP  148 (323)
T KOG0594|consen  122 IKSFMRQLLRGL-----AFLHSH---GILHRDLKP  148 (323)
T ss_pred             HHHHHHHHHHHH-----HHHHhC---CeecccCCc
Confidence            344666676665     899988   999999876

>cd05153 HomoserineK_II Homoserine Kinase, type II

Probab=86.33  E-value=8.9  Score=27.53  Aligned_cols=76  Identities=12%  Similarity=0.040  Sum_probs=45.1

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc--eeeeeee------eecCCcceEEEe
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN--VVKLLGC------CLETEVPLLVYE   90 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~--i~~l~~~------~~~~~~~~lv~e   90 (167)
                      .+.+..|....+|+.... +..+++|....   ........|++++..+...+  +.+.+..      ....+..+++++
T Consensus        19 i~~i~~G~~n~~y~v~~~-~~~~vLr~~~~---~~~~~~~~e~~~l~~L~~~g~~vp~~i~~~~g~~~~~~~~~~~~l~~   94 (296)
T cd05153          19 FEGISAGIENTNYFVTTD-SGRYVLTLFEK---VSAEELPFFLALLDHLAERGLPVPRPIADRDGEYLSELAGKPAALVE   94 (296)
T ss_pred             eecccCccccceEEEEeC-CCcEEEEEcCC---CChHhccHHHHHHHHHHHCCCCCCccccCCCCcEeeeeCCceEEEEE
Confidence            456777777788887643 34678887653   23345556666666653222  3333221      122345689999


Q ss_pred             cCCCCCHH
Q 040049           91 YIPNGNLS   98 (167)
Q Consensus        91 ~~~~g~L~   98 (167)
                      |++|.++.
T Consensus        95 ~i~G~~~~  102 (296)
T cd05153          95 FLAGEHLT  102 (296)
T ss_pred             eCCCCCCC
Confidence            99987653

Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=85.07  E-value=0.19  Score=36.91  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=20.6

Q ss_pred             hhhccCCccccccchhhhhhhhhhhhhcc
Q 040049          138 QLLKGLAPKRKKFEEEKWRHTVLKRKENK  166 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~~~~~i~hr~~~~  166 (167)
                      ++.++.+..+ ||.|.+   +|.|||..|
T Consensus       180 ~vvkdia~aL-dFlH~k---gIAHRDlKP  204 (463)
T KOG0607|consen  180 RVVKDIASAL-DFLHTK---GIAHRDLKP  204 (463)
T ss_pred             HHHHHHHHHH-HHHhhc---CcccccCCc
Confidence            4566677777 999999   999999876

>COG3173 Predicted aminoglycoside phosphotransferase [General function prediction only]

Probab=84.19  E-value=5.6  Score=29.38  Aligned_cols=57  Identities=12%  Similarity=0.170  Sum_probs=33.3

Q ss_pred             CCcEEEEEeccC--CCcccHHHHHHHHHHHhcCCC--CceeeeeeeeecCC--cceEEEecCCC
Q 040049           37 DERIVAVKKSKV--VGKGKLDEFINKVVILSQINY--RNVVKLLGCCLETE--VPLLVYEYIPN   94 (167)
Q Consensus        37 ~~~~~avk~~~~--~~~~~~~~~~~e~~~~~~l~h--~~i~~l~~~~~~~~--~~~lv~e~~~~   94 (167)
                      +++.++++ ...  ..........+|.++++.+.-  .-....+++|....  ..|.||+|++|
T Consensus        47 ~~~~~vlR-~P~~~~~~~~~~~~~re~~~i~~l~~~~vP~p~~~~~~~~~~~g~pf~v~~~veG  109 (321)
T COG3173          47 TGQKYVLR-KPPRGDPVESAHDEKREYRVIAALLDVDVPVPRAFGLCGEGYLGTPFYVMEWVEG  109 (321)
T ss_pred             CCceEEEe-cCCccccchhhhHHHhHHHHHHHhcCCCCCCcccccccccCCCCCceEEEEEecc
Confidence            37777777 321  122334455677777776542  22234455555444  67899999977

>PLN02756 S-methyl-5-thioribose kinase

Probab=83.96  E-value=16  Score=28.15  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=47.8

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCC----Cc---ccHHHHHHHHHHHhcCC---CCceeeeeeeeecCCcceE
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVV----GK---GKLDEFINKVVILSQIN---YRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~----~~---~~~~~~~~e~~~~~~l~---h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..+.+|.|....||+.... +..+++|.-...    ..   -...+-..|...|+.+.   ...+.+++.++.  +..++
T Consensus        36 ~~~eiggGn~N~VyrV~~~-~~svVVKqa~p~~r~vga~wpl~~~R~~~Ea~aL~~~~~~~p~~VPkVy~~de--d~~vl  112 (418)
T PLN02756         36 KIKEVGDGNLNFVYIVVSS-SGSFVIKQALPYIRCIGESWPMTKERAYFEATALREHGRLCPDHVPEVYHFDR--TMALI  112 (418)
T ss_pred             eEEEcCCCceeeEEEEEcC-CccEEEEeCCccccCCCccccCCccHHHHHHHHHHHhhhcCCCCCCeEEEECC--CCCEE
Confidence            4567899999999998753 456888864311    11   13344445566666543   245667777765  45678


Q ss_pred             EEecCCC
Q 040049           88 VYEYIPN   94 (167)
Q Consensus        88 v~e~~~~   94 (167)
                      +||++++
T Consensus       113 vME~L~~  119 (418)
T PLN02756        113 GMRYLEP  119 (418)
T ss_pred             EEeecCC
Confidence            9999977

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.19  E-value=0.33  Score=34.03  Aligned_cols=26  Identities=19%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             hHHHHhhhccCCccccccchhhhhhhhhhhhhcc
Q 040049          133 KIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENK  166 (167)
Q Consensus       133 ~~~~~~~~~~~~~~l~df~~~~~~~~i~hr~~~~  166 (167)
                      ..++.++++.+     ||+|+.   +|+|||..|
T Consensus       135 ryY~~elLkAL-----dyCHS~---GImHRDVKP  160 (338)
T KOG0668|consen  135 RYYIYELLKAL-----DYCHSM---GIMHRDVKP  160 (338)
T ss_pred             HHHHHHHHHHH-----hHHHhc---CcccccCCc
Confidence            34555565554     999998   999999876

>PF04655 APH_6_hur: Aminoglycoside/hydroxyurea antibiotic resistance kinase; InterPro: IPR006748 The aminoglycosides are a large group of biologically active bacterial secondary metabolites, best known for their antibiotic properties []

Probab=83.05  E-value=5.8  Score=28.24  Aligned_cols=78  Identities=21%  Similarity=0.146  Sum_probs=51.3

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC-CCCCHH
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI-PNGNLS   98 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~-~~g~L~   98 (167)
                      ..+..|..+.|+.+...+|.+.++|...+......+.  .....|+..+..+-+++++.-  .+.-.+++|.+ ++.+|.
T Consensus         8 ~~~~~g~~s~V~pv~~~dG~~avLKl~~p~~~~~~E~--~g~~~L~~w~G~GaVrll~~d--~~~~AlLLErl~~g~~L~   83 (253)
T PF04655_consen    8 GPPAHGSSSLVVPVRRADGTPAVLKLAPPHAEAEHEA--RGEAALRWWNGRGAVRLLAAD--PERGALLLERLDPGRSLA   83 (253)
T ss_pred             CCCCCCcceEEEEEEcCCCCeEEEEecCCcccchhhh--hHHhHhheeCCCCceeeeccc--cccchhhhhhccCCCchh
Confidence            4466788899999988889999999876433211111  112457777778888888665  23445777887 455666


Q ss_pred             HHH
Q 040049           99 DYL  101 (167)
Q Consensus        99 ~~i  101 (167)
                      +..
T Consensus        84 ~~~   86 (253)
T PF04655_consen   84 SLP   86 (253)
T ss_pred             hcc
Confidence            554

Aminoglycoside phosphotransferases achieve inactivation of these enzymes by phosphorylation, utilising ATP. Likewise, hydroxyurea is inactivated by phosphorylation of the hydroxy group in the hydroxylamine moiety.; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0006468 protein phosphorylation, 0019748 secondary metabolic process

>TIGR01767 MTRK 5-methylthioribose kinase

Probab=81.61  E-value=8  Score=29.19  Aligned_cols=72  Identities=19%  Similarity=0.200  Sum_probs=45.5

Q ss_pred             eecccCceeEEEEEeCCC-cEEEEEeccC-------CCcccHHHHHHHHHHHhcCC--CCcee-eeeeeeecCCcceEEE
Q 040049           21 VLGQGGQGTVHKGMLADE-RIVAVKKSKV-------VGKGKLDEFINKVVILSQIN--YRNVV-KLLGCCLETEVPLLVY   89 (167)
Q Consensus        21 ~ig~g~~g~v~~~~~~~~-~~~avk~~~~-------~~~~~~~~~~~e~~~~~~l~--h~~i~-~l~~~~~~~~~~~lv~   89 (167)
                      -||.|....||++..+++ +.++||...+       .-+-...+...|...|+...  .|..+ +++.  .+++...++|
T Consensus         2 EigdGnlN~VfrV~~~~g~~svIVKQAlp~vRv~g~~wpl~~~R~~~E~~~L~~~~~~~P~~vP~vy~--~D~e~~~~vM   79 (370)
T TIGR01767         2 EVGDGNLNLVFHVYDQEGDRAAIVKQALPYVRVVGESWPLTLDRARIESSALIRQGEHVPHLVPRIFH--FDTEMAVTVM   79 (370)
T ss_pred             cCCCCceEEEEEEEcCCCCeeEEEEEcCHHHhhcCCCCCCCccHHHHHHHHHHHhhccCccccCeEEE--EccccceehH
Confidence            368999999999986543 5789985321       11344556667777777653  34333 3332  3455566899


Q ss_pred             ecCCC
Q 040049           90 EYIPN   94 (167)
Q Consensus        90 e~~~~   94 (167)
                      |+++.
T Consensus        80 EdL~~   84 (370)
T TIGR01767        80 EDLSH   84 (370)
T ss_pred             hhCcc
Confidence            98864

This enzyme is involved in the methionine salvage pathway in certain bacteria.

>KOG1236 consensus Predicted unusual protein kinase [General function prediction only]

Probab=80.97  E-value=2  Score=33.10  Aligned_cols=53  Identities=8%  Similarity=-0.064  Sum_probs=34.8

Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhH-------HHHHHHHcCchhhhhcccchhHHHH
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDV-------GFILSRRGGIPRLKRKKKKNKIWKQ  137 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~-------~~~~~i~~~l~~~h~~~~~~~~~~~  137 (167)
                      ..++-+|.+|-++..+++....+.....       ..+++....=.++|.|+.|.|++++
T Consensus       320 ~vl~E~~~~Gl~v~~~v~~~~~pe~l~kkva~lg~~AllkMl~vDNFvHaDlHPGNVlir  379 (565)
T KOG1236|consen  320 LVLVETYERGLSVLRFVKWKSQPEALVKKVAKLGVNALLKMLIVDNFVHADLHPGNVLIR  379 (565)
T ss_pred             ceeeeeccccccHHhhhhcccChHHHHHHHHHHHHHHHHHHHHhhcceecccCCCcEEEE
Confidence            3456678888888888887654432222       2233444444678999999999854

>PRK12396 5-methylribose kinase; Reviewed

Probab=80.44  E-value=4.4  Score=30.95  Aligned_cols=74  Identities=15%  Similarity=0.078  Sum_probs=48.1

Q ss_pred             cceecccCceeEEEEEeC-CCcEEEEEeccC---C---CcccHHHHHHHHHHHhcCC--CCceee-eeeeeecCCcceEE
Q 040049           19 NIVLGQGGQGTVHKGMLA-DERIVAVKKSKV---V---GKGKLDEFINKVVILSQIN--YRNVVK-LLGCCLETEVPLLV   88 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~---~---~~~~~~~~~~e~~~~~~l~--h~~i~~-l~~~~~~~~~~~lv   88 (167)
                      .+.||.|....||++... +++.++||...+   .   -+-..++...|.+.|+.+.  .|..++ ++.  .+++...+|
T Consensus        34 ~~eigdGnlN~VfrV~~~~~~~svIVKQAlp~vRv~~swpL~~~R~~~E~~aL~~~~~~~P~~VP~vy~--~D~e~~~~v  111 (409)
T PRK12396         34 CKEIGDGNLNYVFRVWDEQKNISVIVKQAGDTARISDEFKLSTNRIRIESDVLQLEEELAPGLVPKVYL--FDSVMNCCV  111 (409)
T ss_pred             eeEcCCCceEEEEEEeeCCCCceEEEEeccHhhccCCCCCCChHHHHHHHHHHHHHHhhCCCcCCeEEE--ECcHHhhHH
Confidence            467899999999999864 256788885321   1   1345667777888777653  354433 332  245556788


Q ss_pred             EecCCC
Q 040049           89 YEYIPN   94 (167)
Q Consensus        89 ~e~~~~   94 (167)
                      ||+++.
T Consensus       112 MEdL~~  117 (409)
T PRK12396        112 MEDLSD  117 (409)
T ss_pred             HHhCcc
Confidence            888864

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=80.06  E-value=0.46  Score=36.83  Aligned_cols=34  Identities=29%  Similarity=0.413  Sum_probs=25.3

Q ss_pred             hhcccchhHHHHhhhccCCccccccchhhhhhhhhhhhhccC
Q 040049          126 KRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLKRKENKY  167 (167)
Q Consensus       126 h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~~~i~hr~~~~~  167 (167)
                      |........++.|++.++     +|+|.+   +|+|||+..+
T Consensus       214 kft~~qIKc~mkQLl~Gl-----~~cH~~---gvlHRDIK~S  247 (560)
T KOG0600|consen  214 KFTEPQIKCYMKQLLEGL-----EYCHSR---GVLHRDIKGS  247 (560)
T ss_pred             ccChHHHHHHHHHHHHHH-----HHHhhc---Ceeecccccc
Confidence            444555566777887776     788888   9999998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
3tl8_A	349	The Avrptob-Bak1 Complex Reveals Two Structurally S		8e-10
3uim_A	326	Structural Basis For The Impact Of Phosphorylation		1e-09
3gvu_A	292	The Crystal Structure Of Human Abl2 In Complex With		1e-07
1fpu_A	293	Crystal Structure Of Abl Kinase Domain In Complex W		2e-06
2qoh_A	288	Crystal Structure Of Abl Kinase Bound With Ppy-a Le		2e-06
3dk3_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
2z60_A	288	Crystal Structure Of The T315i Mutant Of Abl Kinase		2e-06
3oxz_A	284	Crystal Structure Of Abl Kinase Domain Bound With A		2e-06
3dk7_A	277	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
3oy3_A	284	Crystal Structure Of Abl T315i Mutant Kinase Domain		2e-06
1opk_A	495	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-06
2f4j_A	287	Structure Of The Kinase Domain Of An Imatinib-Resis		2e-06
2v7a_A	286	Crystal Structure Of The T315i Abl Mutant In Comple		2e-06
2hz0_A	270	Abl Kinase Domain In Complex With Nvp-Aeg082 Length		2e-06
2hzi_A	277	Abl Kinase Domain In Complex With Pd180970 Length =		2e-06
3qri_A	277	The Crystal Structure Of Human Abl1 Kinase Domain I		2e-06
2hyy_A	273	Human Abl Kinase Domain In Complex With Imatinib (S		2e-06
2gqg_A	278	X-Ray Crystal Structure Of Dasatinib (Bms-354825) B		2e-06
2e2b_A	293	Crystal Structure Of The C-Abl Kinase Domain In Com		2e-06
2g1t_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-06
3pyy_A	298	Discovery And Characterization Of A Cell-Permeable,		2e-06
2g2f_A	287	A Src-Like Inactive Conformation In The Abl Tyrosin		2e-06
2hiw_A	287	Crystal Structure Of Inactive Conformation Abl Kina		2e-06
1opl_A	537	Structural Basis For The Auto-Inhibition Of C-Abl T		2e-06
3qrj_A	277	The Crystal Structure Of Human Abl1 Kinase Domain T		2e-06
3dk6_A	293	Crystal Structure Of Mutant Abl Kinase Domain In Co		2e-06
2fo0_A	495	Organization Of The Sh3-Sh2 Unit In Active And Inac		2e-06
2r4b_A	321	Erbb4 Kinase Domain Complexed With A Thienopyrimidi		4e-06
3bbt_B	328	Crystal Structure Of The Erbb4 Kinase In Complex Wi		6e-06
3o23_A	305	Human Unphosphorylated Igf1-R Kinase Domain In Comp		1e-05
3q6w_A	307	Structure Of Dually-phosphorylated Met Receptor Kin		2e-05
3qti_A	314	C-Met Kinase In Complex With Nvp-Bvu972 Length = 31		2e-05
3lq8_A	302	Structure Of The Kinase Domain Of C-Met Bound To Xl		2e-05
3f66_A	298	Human C-Met Kinase In Complex With Quinoxaline Inhi		2e-05
3cth_A	314	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
1r0p_A	312	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
2wgj_A	306	X-Ray Structure Of Pf-02341066 Bound To The Kinase		2e-05
3dkg_A	317	Sgx Clone 5698a109kfg1h1 Length = 317		2e-05
3a4p_A	319	Human C-Met Kinase Domain Complexed With 6-Benzylox		2e-05
3i5n_A	309	Crystal Structure Of C-Met With Triazolopyridazine		2e-05
3q6u_A	308	Structure Of The Apo Met Receptor Kinase In The Dua		2e-05
3dkc_A	317	Sgx Clone 5698a65kfg1h1 Length = 317		2e-05
3c1x_A	373	Crystal Structure Of The Tyrosine Kinase Domain Of		2e-05
2wd1_A	292	Human C-Met Kinase In Complex With Azaindole Inhibi		2e-05
2rfn_A	310	X-ray Structure Of C-met With Inhibitor. Length = 3		2e-05
2g15_A	318	Structural Characterization Of Autoinhibited C-Met		2e-05
4gg5_A	319	Crystal Structure Of Cmet In Complex With Novel Inh		2e-05
3qgw_A	286	Crystal Structure Of Itk Kinase Bound To An Inhibit		3e-05
2zm3_A	308	Complex Structure Of Insulin-Like Growth Factor Rec		4e-05
3d94_A	301	Crystal Structure Of The Insulin-Like Growth Factor		4e-05
1jqh_A	308	Igf-1 Receptor Kinase Domain Length = 308		4e-05
3lw0_A	304	Igf-1rk In Complex With Ligand Msc1609119a-1 Length		4e-05
2oj9_A	307	Structure Of Igf-1r Kinase Domain Complexed With A		4e-05
1m7n_A	322	Crystal Structure Of Unactivated Apo Insulin-Like G		4e-05
3lvp_A	336	Crystal Structure Of Bisphosphorylated Igf1-R Kinas		4e-05
1p4o_A	322	Structure Of Apo Unactivated Igf-1r Kinase Domain A		4e-05
3i81_A	315	Crystal Structure Of Insulin-Like Growth Factor 1 R		5e-05
3qqu_A	301	Cocrystal Structure Of Unphosphorylated Igf With Py		8e-05
1k3a_A	299	Structure Of The Insulin-Like Growth Factor 1 Recep		8e-05
3miy_A	266	X-Ray Crystal Structure Of Itk Complexed With Sunit		9e-05
4hct_A	269	Crystal Structure Of Itk In Complex With Compound 5		9e-05
4f1m_A	287	Crystal Structure Of The G1179s Roco4 Kinase Domain		1e-04
4f1o_A	287	Crystal Structure Of The L1180t Mutant Roco4 Kinase		1e-04
3v5j_A	266	Crystal Structure Of Interleukin-2 Inducible T-Cell		1e-04
4f0f_A	287	Crystal Structure Of The Roco4 Kinase Domain Bound		1e-04
1sm2_A	264	Crystal Structure Of The Phosphorylated Interleukin		1e-04
3hgk_A	327	Crystal Structure Of Effect Protein Avrptob Complex		2e-04
2qkw_B	321	Structural Basis For Activation Of Plant Immunity B		2e-04
2jiv_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
2j5e_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		2e-04
4i21_A	329	Crystal Structure Of L858r + T790m Egfr Kinase Doma		2e-04
4i24_A	329	Structure Of T790m Egfr Kinase Domain Co-crystalliz		2e-04
2jit_A	327	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
4i1z_A	329	Crystal Structure Of The Monomeric (v948r) Form Of		2e-04
3w2o_A	331	Egfr Kinase Domain T790m/l858r Mutant With Tak-285		2e-04
4g5p_A	330	Crystal Structure Of Egfr Kinase T790m In Complex W		2e-04
2jiu_A	328	Crystal Structure Of Egfr Kinase Domain T790m Mutat		2e-04
3ika_A	331	Crystal Structure Of Egfr 696-1022 T790m Mutant Cov		3e-04
3gop_A	361	Crystal Structure Of The Egf Receptor Juxtamembrane		3e-04
2itt_A	327	Crystal Structure Of Egfr Kinase Domain L858r Mutat		3e-04
3lzb_A	327	Egfr Kinase Domain Complexed With An Imidazo[2,1-B]		3e-04
2eb3_A	334	Crystal Structure Of Mutated Egfr Kinase Domain (L8		3e-04
3bel_A	315	X-Ray Structure Of Egfr In Complex With Oxime Inhib		3e-04
2j5f_A	327	Crystal Structure Of Egfr Kinase Domain In Complex		3e-04
4hjo_A	337	Crystal Structure Of The Inactive Egfr Tyrosine Kin		3e-04
4g5j_A	330	Crystal Structure Of Egfr Kinase In Complex With Bi		3e-04
4i23_A	329	Crystal Structure Of The Wild-type Egfr Kinase Doma		3e-04
4i20_A	329	Crystal Structure Of Monomeric (v948r) Primary Onco		3e-04
2gs2_A	330	Crystal Structure Of The Active Egfr Kinase Domain		3e-04
3vjo_A	334	Crystal Structure Of The Wild-Type Egfr Kinase Doma		3e-04
2gs7_A	330	Crystal Structure Of The Inactive Egfr Kinase Domai		3e-04
2qoo_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
1xkk_A	352	Egfr Kinase Domain Complexed With A Quinazoline Inh		3e-04
2qoi_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2qok_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f:		3e-04
2rfd_A	324	Crystal Structure Of The Complex Between The Egfr K		3e-04
2qol_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596:y		3e-04
1m14_A	333	Tyrosine Kinase Domain From Epidermal Growth Factor		3e-04
2oib_A	301	Crystal Structure Of Irak4 Kinase Domain Apo Form L		3e-04
2qof_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y596f		3e-04
2qod_A	373	Human Epha3 Kinase And Juxtamembrane Region, Y602f		3e-04
2nry_A	307	Crystal Structure Of Irak-4 Length = 307		3e-04
3t9t_A	267	Crystal Structure Of Btk Mutant (F435t,K596r) Compl		4e-04
2nru_A	307	Crystal Structure Of Irak-4 Length = 307		4e-04
2gsf_A	373	The Human Epha3 Receptor Tyrosine Kinase And Juxtam		4e-04
3dzq_A	361	Human Epha3 Kinase Domain In Complex With Inhibitor		4e-04
2qoc_A	344	Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp		4e-04
3fxx_A	371	Human Epha3 Kinase And Juxtamembrane Region Bound T		4e-04

>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector Length = 349

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 59/104 (56%), Gaps = 1/104 (0%)
Query: 4   FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLD-EFINKVV 62
           FS +EL  A+D+ +   +LG+GG G V+KG LAD  +              + +F  +V 
Sbjct: 28  FSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERXQGGELQFQTEVE 87
Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           ++S   +RN+++L G C+     LLVY Y+ NG+++  L E+ E
Sbjct: 88  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE 131

>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On Plant Receptor- Like Kinase Bak1 Activation Length = 326

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)
Query: 4   FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLD-EFINKVV 62
           FS +EL  A+D+     +LG+GG G V+KG LAD  +              + +F  +V 
Sbjct: 20  FSLRELQVASDNFXNKNILGRGGFGKVYKGRLADGXLVAVKRLKEERTQGGELQFQTEVE 79
Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNE 106
           ++S   +RN+++L G C+     LLVY Y+ NG+++  L E+ E
Sbjct: 80  MISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPE 123

>pdb|3GVU|A Chain A, The Crystal Structure Of Human Abl2 In Complex With Gleevec Length = 292

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V+ G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 40  LGGGQYGEVYVGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTL 99
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                +V EY+P GNL DYL E N + V  V
Sbjct: 100 EPPFYIVTEYMPYGNLLDYLRECNREEVTAV 130

>pdb|1FPU|A Chain A, Crystal Structure Of Abl Kinase Domain In Complex With A Small Molecule Inhibitor Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 116

>pdb|2QOH|A Chain A, Crystal Structure Of Abl Kinase Bound With Ppy-a Length = 288

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 111

>pdb|3DK3|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 79  EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 109

>pdb|2Z60|A Chain A, Crystal Structure Of The T315i Mutant Of Abl Kinase Bound With Ppy-A Length = 288

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAV 111

>pdb|3OXZ|A Chain A, Crystal Structure Of Abl Kinase Domain Bound With A Dfg-Out Inhibitor Ap24534 Length = 284

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 111

>pdb|3DK7|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 277

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 19  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 79  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAV 109

>pdb|3OY3|A Chain A, Crystal Structure Of Abl T315i Mutant Kinase Domain Bound With A Dfg- Out Inhibitor Ap24589 Length = 284

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIIIEFMTYGNLLDYLRECNRQEVSAV 111

>pdb|1OPK|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 495

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 228 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 287
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 288 EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 318

>pdb|2F4J|A Chain A, Structure Of The Kinase Domain Of An Imatinib-Resistant Abl Mutant In Complex With The Aurora Kinase Inhibitor Vx-680 Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 81
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 82  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 112

>pdb|2V7A|A Chain A, Crystal Structure Of The T315i Abl Mutant In Complex With The Inhibitor Pha-739358 Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 22  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 81
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 82  EPPFYIIIEFMTYGNLLDYLRECNRQEVNAV 112

>pdb|2HZ0|A Chain A, Abl Kinase Domain In Complex With Nvp-Aeg082 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 111

>pdb|2HZI|A Chain A, Abl Kinase Domain In Complex With Pd180970 Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 25  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 84
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 85  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 115

>pdb|3QRI|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain In Complex With Dcc- 2036 Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 116

>pdb|2HYY|A Chain A, Human Abl Kinase Domain In Complex With Imatinib (Sti571, Glivec) Length = 273

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 21  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 80
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 81  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 111

>pdb|2GQG|A Chain A, X-Ray Crystal Structure Of Dasatinib (Bms-354825) Bound To Activated Abl Kinase Domain Length = 278

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 116

>pdb|2E2B|A Chain A, Crystal Structure Of The C-Abl Kinase Domain In Complex With Inno-406 Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 86  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 116

>pdb|2G1T|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 113

>pdb|3PYY|A Chain A, Discovery And Characterization Of A Cell-Permeable, Small-Molecule C- Abl Kinase Activator That Binds To The Myristoyl Binding Site Length = 298

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 34  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 93
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 94  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 124

>pdb|2G2F|A Chain A, A Src-Like Inactive Conformation In The Abl Tyrosine Kinase Domain Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 113

>pdb|2HIW|A Chain A, Crystal Structure Of Inactive Conformation Abl Kinase Catalytic Domain Complexed With Type Ii Inhibitor Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 23  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 82
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 83  EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 113

>pdb|1OPL|A Chain A, Structural Basis For The Auto-Inhibition Of C-Abl Tyrosine Kinase Length = 537

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 267 LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 326
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 327 EPPFYIITEFMTYGNLLDYLRECNRQEVNAV 357

>pdb|3QRJ|A Chain A, The Crystal Structure Of Human Abl1 Kinase Domain T315i Mutant In Complex With Dcc-2036 Length = 277

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 26  LGGGQYGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 85
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 86  EPPFYIIIEFMTYGNLLDYLRECNRQEVNAV 116

>pdb|3DK6|A Chain A, Crystal Structure Of Mutant Abl Kinase Domain In Complex With Small Molecule Fragment Length = 293

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 44/91 (48%)
Query: 22  LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVKLLGCCLE 81
           LG G  G V++G+     +             ++EF+ +  ++ +I + N+V+LLG C  
Sbjct: 19  LGGGQFGEVYEGVWKKYSLTVAVKTLKEDTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTR 78
Query: 82  TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                ++ E++  GNL DYL E N   V  V
Sbjct: 79  EPPFYIITEFMTYGNLLDYLRECNRQEVSAV 109

>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine Inhibitor Length = 321

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               EF+++ +I++ +++ ++V+
Sbjct: 45  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 104
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL   +  LV + +P+G L +Y+HE  ++ 
Sbjct: 105 LLGVCLSPTI-QLVTQLMPHGCLLEYVHEHKDNI 137

>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With Lapatinib Length = 328

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 50/94 (53%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               EF+++ +I++ +++ ++V+
Sbjct: 22  VLGSGAFGTVYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL   +  LV + +P+G L +Y+HE  ++ 
Sbjct: 82  LLGVCLSPTI-QLVTQLMPHGCLLEYVHEHKDNI 114

>pdb|3O23|A Chain A, Human Unphosphorylated Igf1-R Kinase Domain In Complex With An Hydantoin Inhibitor Length = 305

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           +F   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 5   VFVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 64
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 65  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 111

>pdb|3Q6W|A Chain A, Structure Of Dually-phosphorylated Met Receptor Kinase In Complex With An Mk-2461 Analog With Specificity For The Activated Receptor Length = 307

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 31  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 90
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 91  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 145

>pdb|3QTI|A Chain A, C-Met Kinase In Complex With Nvp-Bvu972 Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 32  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 92  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 146

>pdb|3LQ8|A Chain A, Structure Of The Kinase Domain Of C-Met Bound To Xl880 (Gsk1 Length = 302

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 30  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 89
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 90  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 144

>pdb|3F66|A Chain A, Human C-Met Kinase In Complex With Quinoxaline Inhibitor Length = 298

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 27  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 86
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 87  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 141

>pdb|3CTH|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Aminopyridine Based Inhibitor Length = 314

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 32  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 92  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 146

>pdb|1R0P|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With The Microbial Alkaloid K-252a Length = 312

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 30  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 89
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 90  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 144

>pdb|2WGJ|A Chain A, X-Ray Structure Of Pf-02341066 Bound To The Kinase Domain Of C-Met Length = 306

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 29  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 88
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 89  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 143

>pdb|3DKG|A Chain A, Sgx Clone 5698a109kfg1h1 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 33  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 92
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 93  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 147

>pdb|3A4P|A Chain A, Human C-Met Kinase Domain Complexed With 6-Benzyloxyquinoline Inhibitor Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 37  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 96
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 97  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 151

>pdb|3I5N|A Chain A, Crystal Structure Of C-Met With Triazolopyridazine Inhibitor 13 Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 31  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 90
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 91  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 145

>pdb|3Q6U|A Chain A, Structure Of The Apo Met Receptor Kinase In The Dually-Phosphorylated, Activated State Length = 308

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 32  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 92  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 146

>pdb|3DKC|A Chain A, Sgx Clone 5698a65kfg1h1 Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 33  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 92
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 93  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 147

>pdb|3C1X|A Chain A, Crystal Structure Of The Tyrosine Kinase Domain Of The Hepatocyte Growth Factor Receptor C-Met In Complex With A Pyrrolotriazine Based Inhibitor Length = 373

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 91  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 150
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 151 NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 205

>pdb|2WD1|A Chain A, Human C-Met Kinase In Complex With Azaindole Inhibitor Length = 292

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 24  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 83
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 84  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 138

>pdb|2RFN|A Chain A, X-ray Structure Of C-met With Inhibitor. Length = 310

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 32  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 91
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 92  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 146

>pdb|2G15|A Chain A, Structural Characterization Of Autoinhibited C-Met Kinase Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 50  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 109
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 110 NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 164

>pdb|4GG5|A Chain A, Crystal Structure Of Cmet In Complex With Novel Inhibitor Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 59/115 (51%), Gaps = 8/115 (6%)
Query: 16  LNVNIVLGQGGQGTVHKGMLADE-----RIXXXXXXXXXXXXXLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D                     + +F+ + +I+   ++ 
Sbjct: 51  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 110
Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYL-HEQNEDFVKD-VGFILSRRGGI 122
           NV+ LLG CL +E  PL+V  Y+ +G+L +++ +E +   VKD +GF L    G+
Sbjct: 111 NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGM 165

>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor Length = 286

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           D+FI +  ++ ++++  +V+L G CLE     LV+E++ +G LSDYL  Q   F  + 
Sbjct: 67  DDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAET 124

>pdb|2ZM3|A Chain A, Complex Structure Of Insulin-Like Growth Factor Receptor And Isoquinolinedione Inhibitor Length = 308

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 8   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 67
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 114

>pdb|3D94|A Chain A, Crystal Structure Of The Insulin-Like Growth Factor-1 Receptor Kinase In Complex With Pqip Length = 301

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 1   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 60
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 61  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 107

>pdb|1JQH|A Chain A, Igf-1 Receptor Kinase Domain Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 8   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 67
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 68  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 114

>pdb|3LW0|A Chain A, Igf-1rk In Complex With Ligand Msc1609119a-1 Length = 304

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 4   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 63
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 64  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 110

>pdb|2OJ9|A Chain A, Structure Of Igf-1r Kinase Domain Complexed With A Benzimidazole Inhibitor Length = 307

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 7   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 66
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 113

>pdb|1M7N|A Chain A, Crystal Structure Of Unactivated Apo Insulin-Like Growth Factor-1 Receptor Kinase Domain Length = 322

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 14  VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 73
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 120

>pdb|3LVP|A Chain A, Crystal Structure Of Bisphosphorylated Igf1-R Kinase Domain (2p) In Complex With A Bis-Azaindole Inhibitor Length = 336

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 36  VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 95
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 96  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 142

>pdb|1P4O|A Chain A, Structure Of Apo Unactivated Igf-1r Kinase Domain At 1.5a Resolution. Length = 322

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 14  VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 73
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 74  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 120

>pdb|3I81|A Chain A, Crystal Structure Of Insulin-Like Growth Factor 1 Receptor (Igf-1r-Wt) Complex With Bms-754807 [1-(4-((5-Cyclopropyl- 1h-Pyrazol-3-Yl)amino)pyrrolo[2,1-F][1,2, 4]triazin-2-Yl)-N- (6-Fluoro-3-Pyridinyl)-2-Methyl-L-Prolinamide] Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 7/107 (6%)
Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLD 55
           ++   E + A + + ++  LGQG  G V+    KG++ DE   R+               
Sbjct: 7   VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERI 66
Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
           EF+N+  ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 67  EFLNEASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 113

>pdb|3QQU|A Chain A, Cocrystal Structure Of Unphosphorylated Igf With Pyrimidine 8 Length = 301

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 8   ELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLDEFINK 60
           E + A + + ++  LGQG  G V+    KG++ DE   R+               EF+N+
Sbjct: 6   EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 65
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
             ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 66  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 107

>pdb|1K3A|A Chain A, Structure Of The Insulin-Like Growth Factor 1 Receptor Kinase Length = 299

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 8   ELDKATDHLNVNIVLGQGGQGTVH----KGMLADE---RIXXXXXXXXXXXXXLDEFINK 60
           E + A + + ++  LGQG  G V+    KG++ DE   R+               EF+N+
Sbjct: 4   EWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNE 63
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
             ++ + N  +VV+LLG   + +  L++ E +  G+L  YL 
Sbjct: 64  ASVMKEFNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLR 105

>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib Length = 266

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           ++FI +  ++ ++++  +V+L G CLE     LV+E++ +G LSDYL  Q   F  + 
Sbjct: 47  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAET 104

>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52 Length = 269

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           ++FI +  ++ ++++  +V+L G CLE     LV+E++ +G LSDYL  Q   F  + 
Sbjct: 50  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAET 107

>pdb|4F1M|A Chain A, Crystal Structure Of The G1179s Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 22  LGQGGQGTVHKGMLADER--------IXXXXXXXXXXXXXLDEFINKVVILSQINYRNVV 73
           +G+GG G VHKG L  ++        I               EF  +V I+S +N+ N+V
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 74  KLLGCCLETEVPLLVYEYIPNGNL 97
           KL G  L    P +V E++P G+L
Sbjct: 87  KLYG--LMHNPPRMVMEFVPCGDL 108

>pdb|4F1O|A Chain A, Crystal Structure Of The L1180t Mutant Roco4 Kinase Domain From D. Discoideum Bound To Appcp Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 22  LGQGGQGTVHKGMLADER--------IXXXXXXXXXXXXXLDEFINKVVILSQINYRNVV 73
           +G+GG G VHKG L  ++        I               EF  +V I+S +N+ N+V
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 74  KLLGCCLETEVPLLVYEYIPNGNL 97
           KL G  L    P +V E++P G+L
Sbjct: 87  KLYG--LMHNPPRMVMEFVPCGDL 108

>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase Itk Catalytic Domain With Thienopyrazolylindole Inhibitor 090 Length = 266

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           ++FI +  ++ ++++  +V+L G CLE     LV+E++ +G LSDYL  Q   F  + 
Sbjct: 47  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAET 104

>pdb|4F0F|A Chain A, Crystal Structure Of The Roco4 Kinase Domain Bound To Appcp From D. Discoideum Length = 287

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 10/84 (11%)
Query: 22  LGQGGQGTVHKGMLADER--------IXXXXXXXXXXXXXLDEFINKVVILSQINYRNVV 73
           +G+GG G VHKG L  ++        I               EF  +V I+S +N+ N+V
Sbjct: 27  IGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIV 86
Query: 74  KLLGCCLETEVPLLVYEYIPNGNL 97
           KL G  L    P +V E++P G+L
Sbjct: 87  KLYG--LMHNPPRMVMEFVPCGDL 108

>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2 Tyrosine Kinase Catalytic Domain Length = 264

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           ++FI +  ++ ++++  +V+L G CLE     LV+E++ +G LSDYL  Q   F  + 
Sbjct: 45  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFMEHGCLSDYLRTQRGLFAAET 102

>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With Kinase Pto Length = 327

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQI 67
           +L++AT++ +   ++G G  G V+KG+L D                ++EF  ++  LS  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
            + ++V L+G C E    +L+Y+Y+ NGNL  +L+
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By Bacterial Effector Protein Avrpto Length = 321

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%)
Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLDEFINKVVILSQI 67
           +L++AT++ +   ++G G  G V+KG+L D                ++EF  ++  LS  
Sbjct: 33  DLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFC 92
Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLH 102
            + ++V L+G C E    +L+Y+Y+ NGNL  +L+
Sbjct: 93  RHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLY 127

>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Compex With Hki-272 Length = 328

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 23  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 82
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 83  LLGICLTSTVQLIM-QLMPFGXLLDYVREHKDNI 115

>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 13-Jab Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLTSTVQLIT-QLMPFGXLLDYVREHKDNI 114

>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In Complex With Mig6 Peptide Length = 329

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 24  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 83
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 84  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 116

>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With Dacomitinib Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 24  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 83
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 84  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 116

>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 114

>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The Gefitinib/erlotinib Resistant Egfr Kinase Domain L858r+t790m Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 24  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 83
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 84  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 116

>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285 Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 26  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 85
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 86  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 118

>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 25  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 84
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 85  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 117

>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In Complex With Aee788 Length = 328

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 23  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 82
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 83  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 115

>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently Binding To Wz4002 Length = 331

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 26  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 85
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L++ + +P G L DY+ E  ++ 
Sbjct: 86  LLGICLTSTVQLIM-QLMPFGCLLDYVREHKDNI 118

>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And Kinase Domains Length = 361

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 56  VLGSGAFGTVYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHVCR 115
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 116 LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 148

>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In Complex With Aee788 Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 114

>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An Imidazo[2,1-B]thiazole Inhibitor Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 114

>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In Complex With Amppnp Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 29  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 88
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 89  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 121

>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor Length = 315

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 16  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 75
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 76  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 108

>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An Irreversible Inhibitor 34-Jab Length = 327

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 114

>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase Domain With Erlotinib Length = 337

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 32  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 91
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 92  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 124

>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992 Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 25  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 84
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 85  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 117

>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In Complex With Dacomitinib (soaked) Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 24  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 83
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 84  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 116

>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic Mutant L858r Egfr Kinase Domain Length = 329

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 24  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 83
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 84  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 116

>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 25  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 84
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 85  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 117

>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In Complex With Amppnp Length = 334

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 29  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 88
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 89  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 121

>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In Complex With Amp-Pnp Length = 330

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 25  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 84
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 85  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 117

>pdb|2QOO|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:y742f Triple Mutant Length = 373

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor- Gw572016 Length = 352

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 47  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 106
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 107 LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 139

>pdb|2QOI|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f Double Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|2QOK|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f:y602f:s768a Triple Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase Domain And A Mig6 Peptide Length = 324

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 19  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 78
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 79  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 111

>pdb|2QOL|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596:y602:s768g Triple Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor Receptor Length = 333

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 21  VLGQGGQGTVHKGMLADE------RIXXXXXXXXXXXXXLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       +               E +++  +++ ++  +V +
Sbjct: 28  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 87
Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V L+  + +P G L DY+ E  ++ 
Sbjct: 88  LLGICLTSTVQLIT-QLMPFGCLLDYVREHKDNI 120

>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form Length = 301

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 4   FSAKELDKATDHLNVNIV------LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLD-- 55
           FS  EL   T++ +   +      +G+GG G V+KG + +  +              +  
Sbjct: 9   FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 68
Query: 56  -EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            +F  ++ ++++  + N+V+LLG   + +   LVY Y+PNG+L D L
Sbjct: 69  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 115

>pdb|2QOF|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y596f Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|2QOD|A Chain A, Human Epha3 Kinase And Juxtamembrane Region, Y602f Mutant Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 4   FSAKELDKATDHLNVNIV------LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLD-- 55
           FS  EL   T++ +   +      +G+GG G V+KG + +  +              +  
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 56  -EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            +F  ++ ++++  + N+V+LLG   + +   LVY Y+PNG+L D L
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed With Imidazo[1,5-A]quinoxaline Length = 267

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 55  DEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
           ++FI +  ++ ++++  +V+L G CLE     LV E++ +G LSDYL  Q   F  + 
Sbjct: 48  EDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLFAAET 105

>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4 Length = 307

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 9/107 (8%)
Query: 4   FSAKELDKATDHLNVNIV------LGQGGQGTVHKGMLADERIXXXXXXXXXXXXXLD-- 55
           FS  EL   T++ +   +      +G+GG G V+KG + +  +              +  
Sbjct: 15  FSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTEELK 74
Query: 56  -EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            +F  ++ ++++  + N+V+LLG   + +   LVY Y+PNG+L D L
Sbjct: 75  QQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRL 121

>pdb|2GSF|A Chain A, The Human Epha3 Receptor Tyrosine Kinase And Juxtamembrane Region Length = 373

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 39  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 145

>pdb|3DZQ|A Chain A, Human Epha3 Kinase Domain In Complex With Inhibitor Awl-Ii- 38.3 Length = 361

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 27  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 84
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 85  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 133

>pdb|2QOC|A Chain A, Human Epha3 Kinase Domain, Phosphorylated, Amp-Pnp Bound Structure Length = 344

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 10  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 67
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 68  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 116

>pdb|3FXX|A Chain A, Human Epha3 Kinase And Juxtamembrane Region Bound To Substrate Kqwdnye[ptyr]iw Length = 371

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLA-----DERIXXXXXXXXXXXXXLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      +  +               +F+ +
Sbjct: 37  AKELDAT--NISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 94
Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFV 109
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F 
Sbjct: 95  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQFT 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	4e-33
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	2e-31
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	2e-29
3soc_A	322	Activin receptor type-2A; structural genomics cons	4e-20
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	9e-19
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	9e-19
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	1e-17
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	3e-17
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	1e-16
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	2e-16
4aoj_A	329	High affinity nerve growth factor receptor; transf	2e-16
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	2e-16
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	4e-16
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	1e-15
3v5q_A	297	NT-3 growth factor receptor; kinase domain, kinase	1e-15
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	2e-15
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	2e-15
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	3e-15
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	3e-15
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	4e-15
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	4e-15
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	4e-15
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	4e-15
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	5e-15
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	5e-15
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	5e-15
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	5e-15
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	5e-15
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	6e-15
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	7e-15
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	7e-15
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	9e-15
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	9e-15
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	1e-14
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	1e-14
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	1e-14
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	2e-14
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	2e-14
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	2e-14
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-14
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	3e-14
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	3e-14
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	3e-14
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	4e-14
3pls_A	298	Macrophage-stimulating protein receptor; protein k	5e-14
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	5e-14
3zzw_A	289	Tyrosine-protein kinase transmembrane receptor RO;	5e-14
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	5e-14
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	1e-13
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	1e-13
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	2e-13
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	4e-13
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	4e-13
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	4e-13
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	6e-13
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	6e-13
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	7e-13
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	1e-12
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	1e-12
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	1e-12
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	2e-12
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	2e-12
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	3e-12
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	4e-12
3q4u_A	301	Activin receptor type-1; structural genomics conso	4e-12
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	5e-12
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	6e-12
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	2e-11
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	2e-11
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	2e-11
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	5e-11
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	8e-11
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	1e-10
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	2e-09
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	3e-09
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	5e-09
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-08
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	2e-08
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	3e-08
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	3e-08
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	6e-08
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	1e-07
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	1e-07
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-07
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	4e-07
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	4e-07
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	6e-07
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	1e-06
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	1e-06
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-06
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	2e-06
3uqc_A	286	Probable conserved transmembrane protein; structur	4e-06
2a19_B	284	Interferon-induced, double-stranded RNA-activated	4e-06
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	5e-06
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	5e-06
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	6e-06
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	7e-06
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	8e-06
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	9e-06
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	1e-05
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	1e-05
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	2e-05
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-05
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	2e-05
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-05
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	3e-05
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	4e-05
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	4e-05
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	6e-05
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-04
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	1e-04
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	1e-04
3niz_A	311	Rhodanese family protein; structural genomics, str	1e-04
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-04
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	1e-04
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	2e-04
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-04
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-04
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-04
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	5e-04
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	5e-04
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	5e-04
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	5e-04
3bhy_A	283	Death-associated protein kinase 3; death associate	5e-04
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-04
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	9e-04
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	9e-04

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3tl8_A* Length = 326

 Score =  118 bits (299), Expect = 4e-33
 Identities = 40/108 (37%), Positives = 67/108 (62%), Gaps = 1/108 (0%)

Query: 1   VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKK-SKVVGKGKLDEFIN 59
           ++ FS +EL  A+D+ +   +LG+GG G V+KG LAD  +VAVK+  +   +G   +F  
Sbjct: 17  LKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQT 76

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
           +V ++S   +RN+++L G C+     LLVY Y+ NG+++  L E+ E 
Sbjct: 77  EVEMISMAVHRNLLRLRGFCMTPTERLLVYPYMANGSVASCLRERPES 124

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A* Length = 321

 Score =  113 bits (286), Expect = 2e-31
 Identities = 31/106 (29%), Positives = 58/106 (54%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKV 61
                 +L++AT++ +   ++G G  G V+KG+L D   VA+K+        ++EF  ++
Sbjct: 27  YRVPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEI 86

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
             LS   + ++V L+G C E    +L+Y+Y+ NGNL  +L+  +  
Sbjct: 87  ETLSFCRHPHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLP 132

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A* Length = 307

 Score =  108 bits (272), Expect = 2e-29
 Identities = 33/115 (28%), Positives = 56/115 (48%), Gaps = 11/115 (9%)

Query: 1   VQIFSAKELDKATD------HLNVNIVLGQGGQGTVHKGMLADERIVAVKK----SKVVG 50
              FS  EL   T+             +G+GG G V+KG + +   VAVKK      +  
Sbjct: 12  FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITT 70

Query: 51  KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +    +F  ++ ++++  + N+V+LLG   + +   LVY Y+PNG+L D L   +
Sbjct: 71  EELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLD 125

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 84.0 bits (208), Expect = 4e-20
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 6/105 (5%)

Query: 4   FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVI 63
              + L   +  L +  V  +G  G V K  L     VAVK   +  K    +   +V  
Sbjct: 14  LGTENLYFQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQDKQSW-QNEYEVYS 71

Query: 64  LSQINYRNVVKLLGCCLETEVP----LLVYEYIPNGNLSDYLHEQ 104
           L  + + N+++ +G             L+  +   G+LSD+L   
Sbjct: 72  LPGMKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN 116

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 80.3 bits (198), Expect = 9e-19
 Identities = 37/121 (30%), Positives = 53/121 (43%), Gaps = 11/121 (9%)

Query: 4   FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFIN--KV 61
            +A E     D+L +  ++G+G  G V+KG L DER VAVK   V        FIN   +
Sbjct: 3   AAASEPSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVK---VFSFANRQNFINEKNI 58

Query: 62  VILSQINYRNVVKLLGCCLETEVP-----LLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
             +  + + N+ + +              LLV EY PNG+L  YL     D+V       
Sbjct: 59  YRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAH 118

Query: 117 S 117
           S
Sbjct: 119 S 119

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 79.7 bits (197), Expect = 9e-19
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 14  DHLNVNIVLGQGGQGTVHKGM-LADERIVAVKK-------SKVVGKGKLDEFINKVVILS 65
           + +     +G+GG G VHKG  + D+ +VA+K         +     K  EF  +V I+S
Sbjct: 19  NEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMS 78

Query: 66  QINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            +N+ N+VKL G       P +V E++P G+L   L ++    
Sbjct: 79  NLNHPNIVKLYGLM--HNPPRMVMEFVPCGDLYHRLLDKAHPI 119

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 76.5 bits (189), Expect = 1e-17
 Identities = 22/107 (20%), Positives = 45/107 (42%), Gaps = 5/107 (4%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG----KGKLDEFINKVVILSQINY 69
             L +  ++G GG G V++     +  VAVK ++          ++    +  + + + +
Sbjct: 7   AELTLEEIIGIGGFGKVYRAFWIGD-EVAVKAARHDPDEDISQTIENVRQEAKLFAMLKH 65

Query: 70  RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
            N++ L G CL+     LV E+   G L+  L  +       V + +
Sbjct: 66  PNIIALRGVCLKEPNLCLVMEFARGGPLNRVLSGKRIPPDILVNWAV 112

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 75.8 bits (187), Expect = 3e-17
 Identities = 26/94 (27%), Positives = 45/94 (47%), Gaps = 3/94 (3%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRN 71
             LN+   +G G  GTVH+        VAVK          +++EF+ +V I+ ++ + N
Sbjct: 37  CDLNIKEKIGAGSFGTVHRAEWHGS-DVAVKILMEQDFHAERVNEFLREVAIMKRLRHPN 95

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +V  +G   +     +V EY+  G+L   LH+  
Sbjct: 96  IVLFMGAVTQPPNLSIVTEYLSRGSLYRLLHKSG 129

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 73.4 bits (181), Expect = 1e-16
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 5/96 (5%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRN 71
             LN    L +   G + KG       + VK  KV      K  +F  +   L   ++ N
Sbjct: 10  KQLNFLTKLNENHSGELWKGRWQGN-DIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPN 68

Query: 72  VVKLLGCCLETEVPLL--VYEYIPNGNLSDYLHEQN 105
           V+ +LG C     P    +  ++P G+L + LHE  
Sbjct: 69  VLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGT 104

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRN 71
           + L +  ++G+G  G V+ G    E  VA++   +    + +L  F  +V+   Q  + N
Sbjct: 33  EQLEIGELIGKGRFGQVYHGRWHGE--VAIRLIDIERDNEDQLKAFKREVMAYRQTRHEN 90

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           VV  +G C+      ++        L   + +     
Sbjct: 91  VVLFMGACMSPPHLAIITSLCKGRTLYSVVRDAKIVL 127

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens} Length = 329

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 24/103 (23%), Positives = 49/103 (47%), Gaps = 8/103 (7%)

Query: 5   SAKELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGKLDEFI 58
               + +    + +   LG+G  G V            D+ +VAVK  K   +    +F 
Sbjct: 34  CVHHIKR--RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQ 91

Query: 59  NKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            +  +L+ + ++++V+  G C E    L+V+EY+ +G+L+ +L
Sbjct: 92  REAELLTMLQHQHIVRFFGVCTEGRPLLMVFEYMRHGDLNRFL 134

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 73.5 bits (181), Expect = 2e-16
 Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 9/102 (8%)

Query: 5   SAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVIL 64
           S   +D     + V  V+G+G  G V K     +  VA+K+ +   + +   FI ++  L
Sbjct: 1   SLHMIDY--KEIEVEEVVGRGAFGVVCKAKWRAK-DVAIKQIES--ESERKAFIVELRQL 55

Query: 65  SQINYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
           S++N+ N+VKL G CL    P+ LV EY   G+L + LH   
Sbjct: 56  SRVNHPNIVKLYGACLN---PVCLVMEYAEGGSLYNVLHGAE 94

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus} Length = 323

 Score = 71.6 bits (176), Expect = 1e-15
 Identities = 22/100 (22%), Positives = 50/100 (50%), Gaps = 12/100 (12%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD----ERIVAVK--KSKVVGKGKLDEFINKVVILSQI 67
               +  +LG+G  G+V +  L         VAVK  K+ ++    ++EF+ +   + + 
Sbjct: 23  QQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEF 82

Query: 68  NYRNVVKLLGCCLETE------VPLLVYEYIPNGNLSDYL 101
           ++ +V KL+G  L +       +P+++  ++ +G+L  +L
Sbjct: 83  DHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFL 122

>3v5q_A NT-3 growth factor receptor; kinase domain, kinase, phosphorylation, transferase-transfer inhibitor complex; HET: 0F4; 2.20A {Homo sapiens} Length = 297

 Score = 71.1 bits (175), Expect = 1e-15
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)

Query: 22  LGQGGQGTVHKGML------ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKL 75
           LG+G  G V            D+ +VAVK  K        +F  +  +L+ + + ++VK 
Sbjct: 23  LGEGAFGKVFLAECYNLSPTKDKMLVAVKALKDPTLAARKDFQREAELLTNLQHEHIVKF 82

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYL 101
            G C + +  ++V+EY+ +G+L+ +L
Sbjct: 83  YGVCGDGDPLIMVFEYMKHGDLNKFL 108

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB: 3sxr_A* Length = 268

 Score = 70.7 bits (174), Expect = 2e-15
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 3/101 (2%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
           EL +  + + +   LG G  G V  G    +  VAVK  K  G    DEF  +   + ++
Sbjct: 4   ELKR--EEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKE-GSMSEDEFFQEAQTMMKL 60

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           ++  +VK  G C +     +V EYI NG L +YL    +  
Sbjct: 61  SHPKLVKFYGVCSKEYPIYIVTEYISNGCLLNYLRSHGKGL 101

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 70.8 bits (174), Expect = 2e-15
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 7/98 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRN 71
             + V   +G G  GTV+KG    +  VAVK   V      +L  F N+V +L +  + N
Sbjct: 24  GQITVGQRIGSGSFGTVYKGKWHGD--VAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVN 81

Query: 72  VVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDF 108
           ++  +G    T   L +V ++    +L  +LH     F
Sbjct: 82  ILLFMGYS--TAPQLAIVTQWCEGSSLYHHLHASETKF 117

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV 72
             L    VLG+G  G   K        ++ +K+     +     F+ +V ++  + + NV
Sbjct: 10  SDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNV 69

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +K +G   + +    + EYI  G L   +   +  +
Sbjct: 70  LKFIGVLYKDKRLNFITEYIKGGTLRGIIKSMDSQY 105

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A* Length = 313

 Score = 70.4 bits (173), Expect = 3e-15
 Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 11/99 (11%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD----ERIVAVK--KSKVVGKGKLDEFINKVVILSQI 67
           + L +  +LG+G  G+V +G L         VAVK  K     + +++EF+++   +   
Sbjct: 34  NLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF 93

Query: 68  NYRNVVKLLGCCLETE-----VPLLVYEYIPNGNLSDYL 101
           ++ NV++LLG C+E        P+++  ++  G+L  YL
Sbjct: 94  SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYL 132

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A* Length = 327

 Score = 70.5 bits (173), Expect = 4e-15
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 7/98 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN 68
            HL     LG+G  G+V              +VAVK+ +  G  +  +F  ++ IL  ++
Sbjct: 23  RHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALH 82

Query: 69  YRNVVKLLGCCLET-EVPL-LVYEYIPNGNLSDYLHEQ 104
              +VK  G         L LV EY+P+G L D+L   
Sbjct: 83  SDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRH 120

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens} Length = 327

 Score = 70.3 bits (173), Expect = 4e-15
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADER-----IVAVKKSKV-VGKGKLDEFINKVVILSQI 67
                  VLG G  GTV+KG+   E       VA+K+ +         E +++  +++ +
Sbjct: 15  TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASV 74

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +  +V +LLG CL + V  L+ + +P G L DY+ E  ++ 
Sbjct: 75  DNPHVCRLLGICLTSTV-QLITQLMPFGCLLDYVREHKDNI 114

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A* Length = 314

 Score = 70.0 bits (172), Expect = 4e-15
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
            +L +   LG+G  G V K              VAVK  K       L + +++  +L Q
Sbjct: 23  KNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQ 82

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           +N+ +V+KL G C +    LL+ EY   G+L  +L
Sbjct: 83  VNHPHVIKLYGACSQDGPLLLIVEYAKYGSLRGFL 117

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7 Length = 343

 Score = 70.4 bits (173), Expect = 4e-15
 Identities = 24/89 (26%), Positives = 45/89 (50%), Gaps = 9/89 (10%)

Query: 21  VLGQGGQGTVHKGMLAD------ERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNV 72
            +G+G  G V +             +VAVK  K +     + D F  +  ++++ +  N+
Sbjct: 54  DIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQAD-FQREAALMAEFDNPNI 112

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
           VKLLG C   +   L++EY+  G+L+++L
Sbjct: 113 VKLLGVCAVGKPMCLLFEYMAYGDLNEFL 141

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 3q6w_A* 3r7o_A* 3q6u_A* 3cth_A* 3ce3_A* 3ctj_A* ... Length = 298

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 26/94 (27%), Positives = 49/94 (52%), Gaps = 6/94 (6%)

Query: 21  VLGQGGQGTVHKGMLAD----ERIVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKL 75
           V+G+G  G V+ G L D    +   AVK    +     + +F+ + +I+   ++ NV+ L
Sbjct: 32  VIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSL 91

Query: 76  LGCCLETEVPLL-VYEYIPNGNLSDYLHEQNEDF 108
           LG CL +E   L V  Y+ +G+L +++  +  + 
Sbjct: 92  LGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP 125

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ... Length = 322

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 26/95 (27%), Positives = 48/95 (50%), Gaps = 7/95 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
           + + ++  LGQG  G V++G+         E  VA+K        +   EF+N+  ++ +
Sbjct: 25  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 84

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
            N  +VV+LLG   + +  L++ E +  G+L  YL
Sbjct: 85  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYL 119

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7 Length = 373

 Score = 70.2 bits (172), Expect = 5e-15
 Identities = 28/112 (25%), Positives = 55/112 (49%), Gaps = 8/112 (7%)

Query: 5   SAKELDKATDHLNVNI--VLGQGGQGTVHKGMLAD----ERIVAVKKSKVVGKGK-LDEF 57
           + + +      L V+   V+G+G  G V+ G L D    +   AVK    +     + +F
Sbjct: 78  AVQHVVIGPSSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQF 137

Query: 58  INKVVILSQINYRNVVKLLGCCLETEVPLL-VYEYIPNGNLSDYLHEQNEDF 108
           + + +I+   ++ NV+ LLG CL +E   L V  Y+ +G+L +++  +  + 
Sbjct: 138 LTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP 189

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A* Length = 325

 Score = 70.0 bits (172), Expect = 5e-15
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 9/109 (8%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLADER-----IVAVKKSKV-VGKGKLDEFIN 59
           A+   +    L    VLG G  GTVHKG+   E       V +K  +   G+       +
Sbjct: 7   ARIFKE--TELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTD 64

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            ++ +  +++ ++V+LLG C       LV +Y+P G+L D++ +     
Sbjct: 65  HMLAIGSLDHAHIVRLLGLCPG-SSLQLVTQYLPLGSLLDHVRQHRGAL 112

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A Length = 283

 Score = 69.6 bits (171), Expect = 5e-15
 Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
           E+D     L     LG G  G V  G    +  VA+K  K  G    DEFI +  ++  +
Sbjct: 20  EIDP--KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKE-GSMSEDEFIEEAKVMMNL 76

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           ++  +V+L G C +     ++ EY+ NG L +YL E    F
Sbjct: 77  SHEKLVQLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRF 117

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 70.3 bits (172), Expect = 6e-15
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILS 65
           A E+ +  + L + + LGQG  G V  G       VA+K  K  G    + F+ +  ++ 
Sbjct: 261 AWEIPR--ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKP-GTMSPEAFLQEAQVMK 317

Query: 66  QINYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVK 110
           ++ +  +V+L      +E P+ +V EY+  G+L D+L  +   +++
Sbjct: 318 KLRHEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGETGKYLR 361

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ... Length = 373

 Score = 69.7 bits (171), Expect = 7e-15
 Identities = 32/108 (29%), Positives = 60/108 (55%), Gaps = 7/108 (6%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKV-VGKGKLDEFINK 60
           AKELD    +++++ V+G G  G V  G L      E  VA+K  KV   + +  +F+ +
Sbjct: 39  AKELDA--TNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGE 96

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             I+ Q ++ N+++L G   +++  ++V EY+ NG+L  +L + +  F
Sbjct: 97  ASIMGQFDHPNIIRLEGVVTKSKPVMIVTEYMENGSLDSFLRKHDAQF 144

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A* Length = 327

 Score = 69.6 bits (171), Expect = 7e-15
 Identities = 26/104 (25%), Positives = 53/104 (50%), Gaps = 9/104 (8%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGK-LDEFIN 59
           KE+ +   ++ +   LG G  G V++G +           VAVK    V   +   +F+ 
Sbjct: 25  KEVPR--KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLM 82

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           + +I+S+ N++N+V+ +G  L++    ++ E +  G+L  +L E
Sbjct: 83  EALIISKFNHQNIVRCIGVSLQSLPRFILMELMAGGDLKSFLRE 126

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens} Length = 326

 Score = 69.3 bits (170), Expect = 9e-15
 Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVV 62
           + ++   HL     LG+G  G+V              +VAVKK +   +  L +F  ++ 
Sbjct: 37  QFEE--RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIE 94

Query: 63  ILSQINYRNVVKLLGCCLET-EVPL-LVYEYIPNGNLSDYLHEQNEDF 108
           IL  + + N+VK  G C       L L+ EY+P G+L DYL +  E  
Sbjct: 95  ILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERI 142

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 69.8 bits (171), Expect = 9e-15
 Identities = 30/99 (30%), Positives = 54/99 (54%), Gaps = 4/99 (4%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERI-VAVKKSKVVGKGKLDEFINKVVILSQ 66
           E+++    + +   LG G  G V++G+     + VAVK  K     +++EF+ +  ++ +
Sbjct: 216 EMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKE 272

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           I + N+V+LLG C       ++ E++  GNL DYL E N
Sbjct: 273 IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECN 311

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ... Length = 288

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 4/104 (3%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERI-VAVKKSKVVGKGKLDEFINKVVILSQ 66
           E+++    + +   LG G  G V++G+     + VAVK  K     +++EF+ +  ++ +
Sbjct: 9   EMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKE 65

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVK 110
           I + N+V+LLG C       ++ E++  GNL DYL E N   V 
Sbjct: 66  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQEVS 109

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens} Length = 367

 Score = 69.0 bits (169), Expect = 1e-14
 Identities = 24/97 (24%), Positives = 49/97 (50%), Gaps = 7/97 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
            ++ +   LG G  G V++G +           VAVK    V   +   +F+ + +I+S+
Sbjct: 71  KNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISK 130

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
            N++N+V+ +G  L++    ++ E +  G+L  +L E
Sbjct: 131 FNHQNIVRCIGVSLQSLPRFILLELMAGGDLKSFLRE 167

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A* 3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* 3io7_A* 3kck_A* 3jy9_A* Length = 295

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 9/105 (8%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINK 60
             + ++   HL     LG+G  G+V              +VAVKK +   +  L +F  +
Sbjct: 4   PTQFEE--RHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFERE 61

Query: 61  VVILSQINYRNVVKLLGCCLET-EVPL-LVYEYIPNGNLSDYLHE 103
           + IL  + + N+VK  G C       L L+ EY+P G+L DYL +
Sbjct: 62  IEILKSLQHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQK 106

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A* Length = 267

 Score = 67.6 bits (166), Expect = 2e-14
 Identities = 31/101 (30%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
            +D     L     +G G  G VH G   ++  VA+K  +  G    ++FI +  ++ ++
Sbjct: 4   VIDP--SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIRE-GAMSEEDFIEEAEVMMKL 60

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           ++  +V+L G CLE     LV E++ +G LSDYL  Q   F
Sbjct: 61  SHPKLVQLYGVCLEQAPICLVTEFMEHGCLSDYLRTQRGLF 101

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 6/106 (5%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILS 65
           A E+ +  + L + + LGQG  G V  G       VA+K  K  G    + F+ +  ++ 
Sbjct: 178 AWEIPR--ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKP-GTMSPEAFLQEAQVMK 234

Query: 66  QINYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVK 110
           ++ +  +V+L      +E P+ +V EY+  G+L D+L  +   +++
Sbjct: 235 KLRHEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGETGKYLR 278

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ... Length = 279

 Score = 68.0 bits (167), Expect = 2e-14
 Identities = 28/97 (28%), Positives = 47/97 (48%), Gaps = 6/97 (6%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
           E+ +  + L +   LG G  G V  G       VAVK  K  G    D F+ +  ++ Q+
Sbjct: 9   EVPR--ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQ-GSMSPDAFLAEANLMKQL 65

Query: 68  NYRNVVKLLGCCLETEVPLL-VYEYIPNGNLSDYLHE 103
            ++ +V+L      T+ P+  + EY+ NG+L D+L  
Sbjct: 66  QHQRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKT 100

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 25/106 (23%), Positives = 46/106 (43%), Gaps = 6/106 (5%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILS 65
           A E+ +  + L +   LG G  G V          VAVK  K  G   ++ F+ +  ++ 
Sbjct: 182 AWEIPR--ESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKP-GSMSVEAFLAEANVMK 238

Query: 66  QINYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVK 110
            + +  +VKL      T+ P+ ++ E++  G+L D+L         
Sbjct: 239 TLQHDKLVKLHAVV--TKEPIYIITEFMAKGSLLDFLKSDEGSKQP 282

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens} Length = 325

 Score = 68.1 bits (167), Expect = 3e-14
 Identities = 25/108 (23%), Positives = 54/108 (50%), Gaps = 7/108 (6%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKV-VGKGKLDEFINK 60
            +E++     +++  ++G G  G V  G L      +  VA+K  K    + +  +F+++
Sbjct: 43  TREIEA--SRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSE 100

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             I+ Q ++ N+++L G      + ++V EY+ NG+L  +L   +  F
Sbjct: 101 ASIMGQFDHPNIIRLEGVVTRGRLAMIVTEYMENGSLDTFLRTHDGQF 148

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* 2jiu_A* ... Length = 327

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 27/94 (28%), Positives = 48/94 (51%), Gaps = 7/94 (7%)

Query: 21  VLGQGGQGTVHKGMLADER-----IVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       VA+K+ +         E +++  +++ ++  +V +
Sbjct: 22  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 81

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL      L+ + +P G L DY+ E  ++ 
Sbjct: 82  LLGICLT-STVQLITQLMPFGCLLDYVREHKDNI 114

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* Length = 318

 Score = 67.7 bits (166), Expect = 3e-14
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 8/100 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKV-VGKGKLDEFINKVVILSQI 67
            +L     LG+G  G V              +VAVK  K   G      +  ++ IL  +
Sbjct: 31  RYLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTL 90

Query: 68  NYRNVVKLLGCCLETEVP--LLVYEYIPNGNLSDYLHEQN 105
            + +++K  GCC +       LV EY+P G+L DYL   +
Sbjct: 91  YHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS 130

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A* Length = 327

 Score = 67.3 bits (165), Expect = 4e-14
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML---ADERIVAVKKSKVVGKGK-LDEFINKVVILSQINY 69
           + +    V+G+G  G V K  +         A+K+ K         +F  ++ +L ++ +
Sbjct: 25  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 84

Query: 70  -RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
             N++ LLG C       L  EY P+GNL D+L
Sbjct: 85  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFL 117

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} Length = 298

 Score = 66.9 bits (164), Expect = 5e-14
 Identities = 21/99 (21%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 16  LNVNIVLGQGGQGTVHKGMLAD----ERIVAVKKSKVVGKGK-LDEFINKVVILSQINYR 70
            + + V+G+G  G V+ G   D        A+K    + + + ++ F+ + +++  +N+ 
Sbjct: 23  THSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHP 82

Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYLHEQNEDF 108
           NV+ L+G  L  E +P ++  Y+ +G+L  ++     + 
Sbjct: 83  NVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNP 121

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ... Length = 316

 Score = 67.3 bits (165), Expect = 5e-14
 Identities = 36/124 (29%), Positives = 50/124 (40%), Gaps = 11/124 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVK--KSKVVGKGKLDEFINKVVILS 65
           D L +   LG+G  G V +            R VAVK  K            ++++ IL 
Sbjct: 27  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRA-LMSELKILI 85

Query: 66  QINY-RNVVKLLGCCLETEVPLLV-YEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIP 123
            I +  NVV LLG C +   PL+V  E+   GNLS YL  +  +FV              
Sbjct: 86  HIGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFL 145

Query: 124 RLKR 127
            L+ 
Sbjct: 146 TLEH 149

>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase, neurotrophic tyrosine kinase, receptor-related NTRKR2; 2.90A {Homo sapiens} Length = 289

 Score = 66.8 bits (164), Expect = 5e-14
 Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 11/105 (10%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVK--KSKVVGKGKLDEFI 58
           KE+      +     LG+   G V+KG L         + VA+K  K K  G  + + F 
Sbjct: 4   KEISL--SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREE-FR 60

Query: 59  NKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           ++ ++ +++ + NVV LLG   + +   +++ Y  +G+L ++L  
Sbjct: 61  HEAMLRARLQHPNVVCLLGVVTKDQPLSMIFSYCSHGDLHEFLVM 105

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 333

 Score = 67.4 bits (165), Expect = 5e-14
 Identities = 29/109 (26%), Positives = 55/109 (50%), Gaps = 8/109 (7%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKV-VGKGKLDEFIN 59
             E+      +    V+G G  G V+KGML       E  VA+K  K    + +  +F+ 
Sbjct: 38  TTEIHP--SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLG 95

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +  I+ Q ++ N+++L G   + +  +++ EY+ NG L  +L E++ +F
Sbjct: 96  EAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEF 144

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A* Length = 289

 Score = 66.2 bits (162), Expect = 1e-13
 Identities = 23/109 (21%), Positives = 47/109 (43%), Gaps = 10/109 (9%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGML--------ADERIVAVKKSKVVGKGKLDEFIN 59
           ++    + L  N  LGQG    + KG+           E  V +K      +   + F  
Sbjct: 4   KIRN--EDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFE 61

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
              ++S+++++++V   G C+  +  +LV E++  G+L  YL +     
Sbjct: 62  AASMMSKLSHKHLVLNYGVCVCGDENILVQEFVKFGSLDTYLKKNKNCI 110

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A* Length = 278

 Score = 65.3 bits (160), Expect = 1e-13
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
            L+     L +   +G+G  G V  G     + VAVK  K         F+ +  +++Q+
Sbjct: 17  ALNM--KELKLLQTIGKGEFGDVMLGDYRGNK-VAVKCIK--NDATAQAFLAEASVMTQL 71

Query: 68  NYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVK 110
            + N+V+LLG  +E +  L +V EY+  G+L DYL  +    + 
Sbjct: 72  RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 115

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 65.8 bits (161), Expect = 2e-13
 Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 6/104 (5%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI 67
            L+     L +   +G+G  G V  G     + VAVK  K         F+ +  +++Q+
Sbjct: 189 ALNM--KELKLLQTIGKGEFGDVMLGDYRGNK-VAVKCIK--NDATAQAFLAEASVMTQL 243

Query: 68  NYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVK 110
            + N+V+LLG  +E +  L +V EY+  G+L DYL  +    + 
Sbjct: 244 RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG 287

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7 Length = 344

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 8/106 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
           ++L    VLG G  G V                VAVK  K        +  ++++ +++Q
Sbjct: 45  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 104

Query: 67  INY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKD 111
           +    N+V LLG C  +    L++EY   G+L +YL  + E F +D
Sbjct: 105 LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSED 150

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A* Length = 313

 Score = 64.6 bits (158), Expect = 4e-13
 Identities = 27/124 (21%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-LDEFINKVVILSQ 66
           + L+    LG G  G V +              VAVK  K        +  ++++ +LS 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 67  INY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL 125
           +    N+V LLG C      L++ EY   G+L ++L  + + F+               L
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 126 KRKK 129
             + 
Sbjct: 143 DLED 146

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A* Length = 302

 Score = 64.3 bits (157), Expect = 4e-13
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 8/96 (8%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLA-----DERIVAVKKSKV-VGKGKLDEFINKVVILSQI 67
             L     LG+G  G V               VAVK  K   G   + +   ++ IL  +
Sbjct: 21  RFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNL 80

Query: 68  NYRNVVKLLGCCLETEVP--LLVYEYIPNGNLSDYL 101
            + N+VK  G C E       L+ E++P+G+L +YL
Sbjct: 81  YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYL 116

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A* Length = 377

 Score = 64.2 bits (157), Expect = 6e-13
 Identities = 25/103 (24%), Positives = 48/103 (46%), Gaps = 4/103 (3%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLADERI-VAVKKSKV-VGKGKLDEFINKVVILS 65
            L+   + L +   +G+G  G V  G L  +   VAVK  +  +      +F+ +  IL 
Sbjct: 110 VLNH--EDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILK 167

Query: 66  QINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           Q ++ N+V+L+G C + +   +V E +  G+   +L  +    
Sbjct: 168 QYSHPNIVRLIGVCTQKQPIYIVMELVQGGDFLTFLRTEGARL 210

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A* Length = 291

 Score = 63.8 bits (156), Expect = 6e-13
 Identities = 27/91 (29%), Positives = 46/91 (50%), Gaps = 6/91 (6%)

Query: 18  VNIVLGQGGQGTVHKGMLADERI---VAVK--KSKVVGKGKLDEFINKVVILSQINYRNV 72
            +  LG G  GTV KG    +++   VAVK  K++       DE + +  ++ Q++   +
Sbjct: 21  EDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYI 80

Query: 73  VKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           V+++G C   E  +LV E    G L+ YL +
Sbjct: 81  VRMIGICEA-ESWMLVMEMAELGPLNKYLQQ 110

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ... Length = 334

 Score = 63.8 bits (156), Expect = 7e-13
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD--------ERIVAVKKSKVVGKGK-LDEFINKVVIL 64
           D L +   LG+G  G V                  VAVK  K     K L + ++++ ++
Sbjct: 35  DKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 94

Query: 65  SQINY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
             I   +N++ LLG C +     ++ EY   GNL +YL
Sbjct: 95  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 132

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A Length = 370

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD--------ERIVAVKKSKVVGKGK-LDEFINKVVIL 64
           D L +   LG+G  G V                  VAVK  K     K L + ++++ ++
Sbjct: 81  DKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMM 140

Query: 65  SQINY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
             I   +N++ LLG C +     ++ EY   GNL +YL
Sbjct: 141 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 178

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A* Length = 333

 Score = 63.1 bits (154), Expect = 1e-12
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 10/107 (9%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVK--KSKVVGKGKLDEFINKVVILS 65
           ++L     LG G  G V +              VAVK  KS      K    ++++ I+S
Sbjct: 46  NNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEA-LMSELKIMS 104

Query: 66  QINY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKD 111
            +    N+V LLG C      L++ EY   G+L ++L  ++     D
Sbjct: 105 HLGQHENIVNLLGACTHGGPVLVITEYCCYGDLLNFLRRKSRVLETD 151

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A* Length = 281

 Score = 62.6 bits (153), Expect = 1e-12
 Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 8/106 (7%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLAD----ERIVAVKKSKV-VGKGKLDEFINKVV 62
           E+ +  + + +   +G+G  G VH+G+          VA+K  K        ++F+ + +
Sbjct: 11  EIQR--ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEAL 68

Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            + Q ++ ++VKL+G   E     ++ E    G L  +L  +    
Sbjct: 69  TMRQFDHPHIVKLIGVITE-NPVWIIMELCTLGELRSFLQVRKYSL 113

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A* Length = 281

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 8/106 (7%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKV-VGKGKLDEFINKVV 62
            + +  + + +N +LG+G  G V++G+      ++  VAVK  K        ++F+++ V
Sbjct: 8   GIAR--EDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAV 65

Query: 63  ILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           I+  +++ ++VKL+G   E E   ++ E  P G L  YL       
Sbjct: 66  IMKNLDHPHIVKLIGIIEE-EPTWIIMELYPYGELGHYLERNKNSL 110

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens} Length = 382

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 28/98 (28%), Positives = 43/98 (43%), Gaps = 10/98 (10%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD--------ERIVAVKKSKVVGKGK-LDEFINKVVIL 64
           D L +   LG+G  G V                  VAVK  K     K L + I+++ ++
Sbjct: 69  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 128

Query: 65  SQINY-RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYL 101
             I   +N++ LLG C +     ++ EY   GNL +YL
Sbjct: 129 KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYL 166

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Length = 656

 Score = 62.6 bits (152), Expect = 3e-12
 Identities = 23/103 (22%), Positives = 47/103 (45%), Gaps = 8/103 (7%)

Query: 6   AKELDKATDHLNVNIVLGQGGQGTVHKGMLAD----ERIVAVKKSKV-VGKGKLDEFINK 60
             E+ +  + + +   +G+G  G VH+G+          VA+K  K        ++F+ +
Sbjct: 384 DYEIQR--ERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQE 441

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
            + + Q ++ ++VKL+G   E  V  ++ E    G L  +L  
Sbjct: 442 ALTMRQFDHPHIVKLIGVITENPV-WIIMELCTLGELRSFLQV 483

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens} Length = 613

 Score = 61.9 bits (150), Expect = 4e-12
 Identities = 28/100 (28%), Positives = 50/100 (50%), Gaps = 5/100 (5%)

Query: 13  TDHLNVNIVLGQGGQGTVHKGML--ADERI-VAVKKSKV-VGKGKLDEFINKVVILSQIN 68
            + L  +I LG G  G+V +G+     ++I VA+K  K    K   +E + +  I+ Q++
Sbjct: 335 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLD 394

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
              +V+L+G C    + +LV E    G L  +L  + E+ 
Sbjct: 395 NPYIVRLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEI 433

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 17/123 (13%)

Query: 1   VQIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK 60
           +Q   A+++            +G+G  G V +G    E  VAVK   +        +  +
Sbjct: 2   MQRTVARDITLLE-------CVGKGRYGEVWRGSWQGEN-VAVK---IFSSRDEKSWFRE 50

Query: 61  VVI--LSQINYRNVVKLLGCCLETEVP----LLVYEYIPNGNLSDYLHEQNEDFVKDVGF 114
             +     + + N++  +   + +        L+  Y   G+L DYL     D V  +  
Sbjct: 51  TELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQLTTLDTVSCLRI 110

Query: 115 ILS 117
           +LS
Sbjct: 111 VLS 113

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 61.7 bits (150), Expect = 5e-12
 Identities = 22/118 (18%), Positives = 44/118 (37%), Gaps = 12/118 (10%)

Query: 8   ELDKATDHLNVNI--VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFIN--KVVI 63
            L + T    + +   +G+G  G V +G       VAVK   +    +   +    ++  
Sbjct: 34  LLVQRTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVK---IFSSREERSWFREAEIYQ 89

Query: 64  LSQINYRNVVKLLGCCLETEVP----LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILS 117
              + + N++  +    +         LV +Y  +G+L DYL+         +   LS
Sbjct: 90  TVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALS 147

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B* Length = 291

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 21  VLGQGGQGTVHKGML----ADERIVAVKKSKV---VGKGKLDEFINKVVILSQINYRNVV 73
            LG G  G V +G           VAVK  K         +D+FI +V  +  +++RN++
Sbjct: 25  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLI 84

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +L G  L   +  +V E  P G+L D L +    F
Sbjct: 85  RLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHF 118

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7 Length = 287

 Score = 60.0 bits (146), Expect = 2e-11
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 5/95 (5%)

Query: 18  VNIVLGQGGQGTVHKGML---ADERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVV 73
            +I LG G  G+V +G+      +  VA+K  K    K   +E + +  I+ Q++   +V
Sbjct: 14  ADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIV 73

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +L+G C    + +LV E    G L  +L  + E+ 
Sbjct: 74  RLIGVCQAEAL-MLVMEMAGGGPLHKFLVGKREEI 107

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 60.1 bits (146), Expect = 2e-11
 Identities = 22/103 (21%), Positives = 39/103 (37%), Gaps = 10/103 (9%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFIN--KVVILSQINYRNVVKLLGC 78
            +G+G  G V  G    E  VAVK   V    +   +    ++     + + N++  +  
Sbjct: 44  QIGKGRYGEVWMGKWRGE-KVAVK---VFFTTEEASWFRETEIYQTVLMRHENILGFIAA 99

Query: 79  CLETEVP----LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILS 117
            ++         L+ +Y  NG+L DYL     D    +    S
Sbjct: 100 DIKGTGSWTQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYS 142

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vid_A* 3hng_A* Length = 359

 Score = 58.8 bits (142), Expect = 5e-11
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 9/117 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSK-VVGKGKLDEFINKVVILSQ 66
           D L +   LG+G  G V +         A  R VAVK  K      +    ++++ IL  
Sbjct: 22  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 81

Query: 67  I-NYRNVVKLLGCCLETEVPLLV-YEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGG 121
           I ++ NVV LLG C +   PL+V  E+   GNLS YL  +  +FV         R G
Sbjct: 82  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQG 138

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 57.7 bits (140), Expect = 8e-11
 Identities = 27/126 (21%), Positives = 52/126 (41%), Gaps = 18/126 (14%)

Query: 20  IVLGQGGQGTVHKGMLADE-RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
           +VLG+G  G V+ G        +A+K+              ++ +   + ++N+V+ LG 
Sbjct: 28  VVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGS 87

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQ 138
             E     +  E +P G+LS                +L  + G   LK  ++    + +Q
Sbjct: 88  FSENGFIKIFMEQVPGGSLSA---------------LLRSKWG--PLKDNEQTIGFYTKQ 130

Query: 139 LLKGLA 144
           +L+GL 
Sbjct: 131 ILEGLK 136

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 57.4 bits (139), Expect = 1e-10
 Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 27/133 (20%)

Query: 19  NIVLGQGGQGTVHKGMLADE-RIVAVKKSKVVGKGK--LDEFINKVVILSQINYRNVVKL 75
           +I +G+G   TV+KG+  +    VA  + +     K     F  +  +L  + + N+V+ 
Sbjct: 31  DIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRF 90

Query: 76  LGCCLETEVP----LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKK 131
                 T       +LV E + +G L  YL                +R  + ++K  +  
Sbjct: 91  YDSWESTVKGKKCIVLVTELMTSGTLKTYL----------------KRFKVMKIKVLRS- 133

Query: 132 NKIWKQQLLKGLA 144
              W +Q+LKGL 
Sbjct: 134 ---WCRQILKGLQ 143

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 53.9 bits (130), Expect = 2e-09
 Identities = 24/83 (28%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +GQG  GTV+  M +A  + VA+++  +  + K +  IN+++++ +    N+V  L   L
Sbjct: 28  IGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYL 87

Query: 81  ETEVPLLVYEYIPNGNLSDYLHE 103
             +   +V EY+  G+L+D + E
Sbjct: 88  VGDELWVVMEYLAGGSLTDVVTE 110

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 53.5 bits (129), Expect = 3e-09
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +G+G  G V         R VAVK   +  + + +   N+VVI+    + NVV++    L
Sbjct: 53  IGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFNVVEMYKSYL 112

Query: 81  ETEVPLLVYEYIPNGNLSDYLHE 103
             E   ++ E++  G L+D + +
Sbjct: 113 VGEELWVLMEFLQGGALTDIVSQ 135

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG G  G V+K        + A K  +   + +L+++I ++ IL+  ++  +VKLLG  
Sbjct: 26  ELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAY 85

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQN 105
                  ++ E+ P G +   + E +
Sbjct: 86  YHDGKLWIMIEFCPGGAVDAIMLELD 111

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 19/111 (17%), Positives = 47/111 (42%), Gaps = 14/111 (12%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGK-LDEFINKVVILSQINYRNVVKLLGC 78
            LG+GG G V +     D+   A+K+ ++  +    ++ + +V  L+++ +  +V+    
Sbjct: 12  CLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNA 71

Query: 79  CLE---------TEVPLLVY---EYIPNGNLSDYLHEQNEDFVKDVGFILS 117
            LE         +   + +Y   +     NL D+++ +     ++    L 
Sbjct: 72  WLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLH 122

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 51.7 bits (124), Expect = 2e-08
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           +G+G  G VH+          AVKK ++    +++E    +V  + ++   +V L G   
Sbjct: 66  VGRGSFGEVHRMKDKQTGFQCAVKKVRL-EVFRVEE----LVACAGLSSPRIVPLYGAVR 120

Query: 81  ETEVPLLVYEYIPNGNLSDYL 101
           E     +  E +  G+L   +
Sbjct: 121 EGPWVNIFMELLEGGSLGQLI 141

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 24/130 (18%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDE--FINKVVILSQI-NYRNVVKLL 76
            +G G  G+V K +   D  I A+K+SK    G +DE   + +V   + +  + +VV+  
Sbjct: 18  KIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYF 77

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWK 136
               E +  L+  EY   G+L+D + E                    R+    K+ ++  
Sbjct: 78  SAWAEDDHMLIQNEYCNGGSLADAISENY------------------RIMSYFKEAELKD 119

Query: 137 --QQLLKGLA 144
              Q+ +GL 
Sbjct: 120 LLLQVGRGLR 129

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 50.8 bits (122), Expect = 3e-08
 Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDE---FINKVVILSQINYRNVVKLL 76
            +G+G    V++   L D   VA+KK ++            I ++ +L Q+N+ NV+K  
Sbjct: 39  KIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYY 98

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
              +E     +V E    G+LS  +    + 
Sbjct: 99  ASFIEDNELNIVLELADAGDLSRMIKHFKKQ 129

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 49.7 bits (119), Expect = 6e-08
 Identities = 18/86 (20%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG+GG   V     L D    A+K+     +   +E   +  +    N+ N+++L+  C
Sbjct: 36  KLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYC 95

Query: 80  LETEVP----LLVYEYIPNGNLSDYL 101
           L          L+  +   G L + +
Sbjct: 96  LRERGAKHEAWLLLPFFKRGTLWNEI 121

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 4/108 (3%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKG-MLADERIVAVK---KSKVVGKGKLDEF 57
            +F        +D      VLG+G  G V         +  AVK   K +V  K   +  
Sbjct: 14  GMFVQHSTAIFSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESL 73

Query: 58  INKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           + +V +L Q+++ N++KL     +     LV E    G L D +  + 
Sbjct: 74  LREVQLLKQLDHPNIMKLYEFFEDKGYFYLVGEVYTGGELFDEIISRK 121

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 48.9 bits (117), Expect = 1e-07
 Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGK--LDEFINKVVILSQINYRNVVKLLG 77
            +G+G  G         D R   +K+  +        +E   +V +L+ + + N+V+   
Sbjct: 31  KIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRE 90

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQN 105
              E     +V +Y   G+L   ++ Q 
Sbjct: 91  SFEENGSLYIVMDYCEGGDLFKRINAQK 118

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 38/140 (27%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
           VLGQG  G V K     D R  A+KK +   + KL   +++V++L+ +N++ VV+     
Sbjct: 13  VLGQGAFGQVVKARNALDSRYYAIKKIRHT-EEKLSTILSEVMLLASLNHQYVVRYYAAW 71

Query: 80  LETEVPL-------------LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLK 126
           LE    +             +  EY  NG L D +H +N                     
Sbjct: 72  LERRNFVKPMTAVKKKSTLFIQMEYCENGTLYDLIHSEN--------------------- 110

Query: 127 RKKKKNKIWK--QQLLKGLA 144
             +++++ W+  +Q+L+ L+
Sbjct: 111 LNQQRDEYWRLFRQILEALS 130

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 47.3 bits (113), Expect = 4e-07
 Identities = 21/85 (24%), Positives = 43/85 (50%), Gaps = 2/85 (2%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKLLGC 78
            +G+G  G V KG+    +++VA+K   +   + ++++   ++ +LSQ +   V K  G 
Sbjct: 29  KIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGS 88

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHE 103
            L+     ++ EY+  G+  D L  
Sbjct: 89  YLKDTKLWIIMEYLGGGSALDLLEP 113

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 47.4 bits (113), Expect = 4e-07
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
           +LGQG    V +G       + A+K  + +     +D  + +  +L ++N++N+VKL   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAI 75

Query: 79  --CLETEVPLLVYEYIPNGNLSDYLHEQ 104
                T   +L+ E+ P G+L   L E 
Sbjct: 76  EEETTTRHKVLIMEFCPCGSLYTVLEEP 103

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 3/85 (3%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           LG+G  G+V+K +     +IVA+K+  V  +  L E I ++ I+ Q +  +VVK  G   
Sbjct: 37  LGEGSYGSVYKAIHKETGQIVAIKQVPV--ESDLQEIIKEISIMQQCDSPHVVKYYGSYF 94

Query: 81  ETEVPLLVYEYIPNGNLSDYLHEQN 105
           +     +V EY   G++SD +  +N
Sbjct: 95  KNTDLWIVMEYCGAGSVSDIIRLRN 119

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
           +LGQG    V +G       + A+K  + +     +D  + +  +L ++N++N+VKL   
Sbjct: 16  ILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAI 75

Query: 79  --CLETEVPLLVYEYIPNGNLSDYLHEQ 104
                T   +L+ E+ P G+L   L E 
Sbjct: 76  EEETTTRHKVLIMEFCPCGSLYTVLEEP 103

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 46.0 bits (109), Expect = 1e-06
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDE-----FINKVVILSQIN--YRNVV 73
            +G GG   V + +   ++I A+   K V   + D      + N++  L+++      ++
Sbjct: 63  QIGSGGSSKVFQVLNEKKQIYAI---KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKII 119

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ---NEDFVK 110
           +L    +  +   +V E   N +L+ +L ++   +    K
Sbjct: 120 RLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK 158

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDE-----FINKVVILSQIN--YRNVV 73
            +G GG   V + +   ++I A+   K V   + D      + N++  L+++      ++
Sbjct: 35  QIGSGGSSKVFQVLNEKKQIYAI---KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKII 91

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ---NEDFVK 110
           +L    +  +   +V E   N +L+ +L ++   +    K
Sbjct: 92  RLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK 130

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 45.5 bits (108), Expect = 2e-06
 Identities = 18/100 (18%), Positives = 43/100 (43%), Gaps = 14/100 (14%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDE-----FINKVVILSQIN--YRNVV 73
            +G GG   V + +   ++I A+   K V   + D      + N++  L+++      ++
Sbjct: 16  QIGSGGSSKVFQVLNEKKQIYAI---KYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKII 72

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ---NEDFVK 110
           +L    +  +   +V E   N +L+ +L ++   +    K
Sbjct: 73  RLYDYEITDQYIYMVMEC-GNIDLNSWLKKKKSIDPWERK 111

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A Length = 286

 Score = 44.4 bits (105), Expect = 4e-06
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 8/89 (8%)

Query: 21  VLGQGGQGTVHKGMLADE---RIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVK 74
             G        + +  D    R VA+       V+    L E +++ + LS+I+   V +
Sbjct: 38  FHGGVPPLQFWQAL--DTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVAR 95

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           +L         L+V E+I  G+L +    
Sbjct: 96  VLDVVHTRAGGLVVAEWIRGGSLQEVADT 124

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 44.2 bits (105), Expect = 4e-06
 Identities = 18/107 (16%), Positives = 41/107 (38%), Gaps = 21/107 (19%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
           ++G GG G V K     D +   +K+ K       ++   +V  L+++++ N+V   GC 
Sbjct: 18  LIGSGGFGQVFKAKHRIDGKTYVIKRVKY----NNEKAEREVKALAKLDHVNIVHYNGCW 73

Query: 80  LETEVPL----------------LVYEYIPNGNLSDYLHEQNEDFVK 110
              +                   +  E+   G L  ++ ++  + + 
Sbjct: 74  DGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLD 120

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 44.2 bits (105), Expect = 5e-06
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 5/92 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGK--LDEFINKVVILSQINYRNVVKLLG 77
            +G G  G   K    +D +I+  K+       +      +++V +L ++ + N+V+   
Sbjct: 13  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 72

Query: 78  CCLETEVPLL--VYEYIPNGNLSDYLHEQNED 107
             ++     L  V EY   G+L+  + +  ++
Sbjct: 73  RIIDRTNTTLYIVMEYCEGGDLASVITKGTKE 104

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 44.3 bits (105), Expect = 5e-06
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 5/92 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEF---INKVVILSQINYRNVVKLL 76
            +G G  G V+    + +  +VA+KK    GK   +++   I +V  L ++ + N ++  
Sbjct: 61  EIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYR 120

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           GC L      LV EY   G+ SD L    +  
Sbjct: 121 GCYLREHTAWLVMEYCL-GSASDLLEVHKKPL 151

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 43.7 bits (104), Expect = 6e-06
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 6/92 (6%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
           LG+G    V++   +     VA+K   K  +   G +    N+V I  Q+ + ++++L  
Sbjct: 19  LGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYN 78

Query: 78  CCLETEVPL-LVYEYIPNGNLSDYLHEQNEDF 108
              E    + LV E   NG ++ YL  + + F
Sbjct: 79  Y-FEDSNYVYLVLEMCHNGEMNRYLKNRVKPF 109

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 43.9 bits (104), Expect = 7e-06
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 5/108 (4%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKG-MLADERIVAVK---KSKVVGKGKLDEF 57
            +F   +    ++       LG G  G V            A+K   K+ V       + 
Sbjct: 25  GMFITSKKGHLSEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTS-SNSKL 83

Query: 58  INKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           + +V +L  +++ N++KL     +     LV E    G L D +  + 
Sbjct: 84  LEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVMECYKGGELFDEIIHRM 131

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 43.5 bits (103), Expect = 8e-06
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLD--EFINKVVILSQI-NYRNVVKLL 76
            LG G  G V K     D R+ AVK+S    +G  D    + +V    ++  +   V+L 
Sbjct: 64  RLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLE 123

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
               E  +  L  E     +L  +        
Sbjct: 124 QAWEEGGILYLQTELC-GPSLQQHCEAWGASL 154

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
           LG+GG     +      + + A K   KS ++   + ++   ++ I   + +++VV   G
Sbjct: 49  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 108

Query: 78  CCLETEVPL-LVYEYIPNGNLSDYL 101
              E    + +V E     +L +  
Sbjct: 109 -FFEDNDFVFVVLELCRRRSLLELH 132

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 43.0 bits (102), Expect = 1e-05
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
           LG+GG     +      + + A K   KS ++   + ++   ++ I   + +++VV   G
Sbjct: 23  LGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHG 82

Query: 78  CCLETEVPL-LVYEYIPNGNLSDYL 101
              E    + +V E     +L +  
Sbjct: 83  -FFEDNDFVFVVLELCRRRSLLELH 106

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKV-VGKGKLDEFINKVVILSQINYRNVVKLLGC 78
           V+G G    V        +  VA+K+  +   +  +DE + ++  +SQ ++ N+V     
Sbjct: 22  VIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTS 81

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFI 115
            +  +   LV + +  G++ D +           G +
Sbjct: 82  FVVKDELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVL 118

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 6/103 (5%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKS---KVVGKGKLDEF---INK 60
            E    +  + V+ +LG+G    V++    D      K+    KV       EF      
Sbjct: 58  TEFQLGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPANPWEFYIGTQL 117

Query: 61  VVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHE 103
           +  L        +K     L     +LV E    G L + ++ 
Sbjct: 118 MERLKPSMQHMFMKFYSAHLFQNGSVLVGELYSYGTLLNAINL 160

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 42.9 bits (101), Expect = 2e-05
 Identities = 18/97 (18%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 13  TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN 71
            DH +++  LG G  G VH+    A     A K      +   +    ++  +S + +  
Sbjct: 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPT 215

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +V L     +    +++YE++  G L + + +++   
Sbjct: 216 LVNLHDAFEDDNEMVMIYEFMSGGELFEKVADEHNKM 252

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 7/90 (7%)

Query: 21  VLGQGGQGTVHKG-MLADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           +LG+G  G V K      ++  AVK   K+    K      + +V +L ++++ N++KL 
Sbjct: 29  MLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNK-DTSTILREVELLKKLDHPNIMKLF 87

Query: 77  GCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
               E      +V E    G L D + ++ 
Sbjct: 88  EIL-EDSSSFYIVGELYTGGELFDEIIKRK 116

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 21  VLGQGGQGTVHKGMLADER----IVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVV 73
            LG+G  G V+   LA E+    I+A+K   K+++   G   +   +V I S + + N++
Sbjct: 16  PLGKGKFGNVY---LAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNIL 72

Query: 74  KLLGCCLETEVPL-LVYEYIPNGNLSDYL 101
           +L G        + L+ EY P G +   L
Sbjct: 73  RLYG-YFHDATRVYLILEYAPLGTVYREL 100

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 22/118 (18%), Positives = 45/118 (38%), Gaps = 14/118 (11%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKG-MLADERIVAVK---KSKVVG------- 50
            ++  K+  K  +       LG G  G V            A+K   KS+          
Sbjct: 24  GMYVRKKEGKIGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDN 83

Query: 51  ---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
              +   +E  N++ +L  +++ N++KL     + +   LV E+   G L + +  ++
Sbjct: 84  KNIEKFHEEIYNEISLLKSLDHPNIIKLFDVFEDKKYFYLVTEFYEGGELFEQIINRH 141

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 21  VLGQGGQ--GTVHKGM-LADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVKL 75
           V+G+G +   TV+          V V++  +       +     ++ +    N+ N+V  
Sbjct: 32  VIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPY 91

Query: 76  LGCCLETEVPLLVYEYIPNGNLSD 99
               +      +V  ++  G+  D
Sbjct: 92  RATFIADNELWVVTSFMAYGSAKD 115

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 8/91 (8%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLL-- 76
            LG GG G V + +       VA+K+  + +     + +  ++ I+ ++N+ NVV     
Sbjct: 21  RLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREV 80

Query: 77  ----GCCLETEVPLLVYEYIPNGNLSDYLHE 103
                     ++PLL  EY   G+L  YL++
Sbjct: 81  PDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQ 111

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 9/93 (9%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           +LG G  G VHK    A    +A K      +  K   +E  N++ +++Q+++ N+++L 
Sbjct: 96  ILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDK---EEVKNEISVMNQLDHANLIQLY 152

Query: 77  GCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDF 108
               E++  + LV EY+  G L D + +++ + 
Sbjct: 153 D-AFESKNDIVLVMEYVDGGELFDRIIDESYNL 184

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 40.3 bits (95), Expect = 1e-04
 Identities = 25/130 (19%), Positives = 53/130 (40%), Gaps = 28/130 (21%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINK-----VVILSQINYRNVVKL 75
           LG+G   TV+K       +IVA+KK K+  + +  + IN+     + +L ++++ N++ L
Sbjct: 18  LGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGL 77

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF-VKDVGFILSRRGGIPRLKRKKKKNKI 134
           L          LV++++   +L   + + +       +                    K 
Sbjct: 78  LDAFGHKSNISLVFDFMET-DLEVIIKDNSLVLTPSHI--------------------KA 116

Query: 135 WKQQLLKGLA 144
           +    L+GL 
Sbjct: 117 YMLMTLQGLE 126

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 24/132 (18%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 18  VNIVLGQGGQGTVHKGMLADE---RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVK 74
               +G+G  G V+K    D    +  A+K+ +  G G       ++ +L ++ + NV+ 
Sbjct: 25  EGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIE--GTGISMSACREIALLRELKHPNVIS 82

Query: 75  LLGCCLE-TEVPL-LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKN 132
           L    L   +  + L+++Y  + +L   +              L R              
Sbjct: 83  LQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANKKPVQLPR-----------GMV 130

Query: 133 KIWKQQLLKGLA 144
           K    Q+L G+ 
Sbjct: 131 KSLLYQILDGIH 142

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} Length = 681

 Score = 40.6 bits (95), Expect = 1e-04
 Identities = 14/95 (14%), Positives = 33/95 (34%), Gaps = 16/95 (16%)

Query: 21  VLGQGGQGTVHKG--MLADERIVAVKKSKVVGKGKLDE-----FINKVVILSQINYRNVV 73
            +  GG G ++       + R V +K          D       + +   L+++ + ++V
Sbjct: 87  CIAHGGLGWIYLALDRNVNGRPVVLK----GLVHSGDAEAQAMAMAERQFLAEVVHPSIV 142

Query: 74  KLL-----GCCLETEVPLLVYEYIPNGNLSDYLHE 103
           ++             V  +V EY+   +L     +
Sbjct: 143 QIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ 177

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 28/128 (21%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK-----VVILSQINYRNVVKLL 76
           +G+G  G V+K   +  RIVA+K+ ++      DE I       + +L ++++ N+V L+
Sbjct: 29  VGEGTYGVVYKAKDSQGRIVALKRIRL---DAEDEGIPSTAIREISLLKELHHPNIVSLI 85

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWK 136
                     LV+E++   +L   L E                        +  + KI+ 
Sbjct: 86  DVIHSERCLTLVFEFMEK-DLKKVLDENKTGL-------------------QDSQIKIYL 125

Query: 137 QQLLKGLA 144
            QLL+G+A
Sbjct: 126 YQLLRGVA 133

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 12/89 (13%)

Query: 21  VLGQGGQGTVHKGMLADER----IVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVV 73
            LG+G  G V+   LA E+    I+A+K   KS++  +G   +   ++ I S + + N++
Sbjct: 21  PLGKGKFGNVY---LAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNIL 77

Query: 74  KLLGCCLETEVPL-LVYEYIPNGNLSDYL 101
           ++          + L+ E+ P G L   L
Sbjct: 78  RMYN-YFHDRKRIYLMLEFAPRGELYKEL 105

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 6/119 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDE--FINKVVILSQINYRNVVK 74
            +GQG  G V   +      I A+K   K+K+      D      +V ++ ++++ N+ +
Sbjct: 33  AIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIAR 92

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNK 133
           L     + +   LV E    G+L D L+   +D        + +    P  +  ++   
Sbjct: 93  LYEVYEDEQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAIN 151

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 21/90 (23%), Positives = 44/90 (48%), Gaps = 9/90 (10%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGC 78
           ++G G  G V+KG  +   ++ A+K   V G  + +E   ++ +L +  ++RN+    G 
Sbjct: 31  LVGNGTYGQVYKGRHVKTGQLAAIKVMDVTGD-EEEEIKQEINMLKKYSHHRNIATYYGA 89

Query: 79  CLETEVPL------LVYEYIPNGNLSDYLH 102
            ++   P       LV E+   G+++D + 
Sbjct: 90  FIKKNPPGMDDQLWLVMEFCGAGSVTDLIK 119

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 39.4 bits (92), Expect = 2e-04
 Identities = 19/89 (21%), Positives = 37/89 (41%), Gaps = 5/89 (5%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINY-RNVVKLLGCC 79
           VLG G +GT+    + D R VAV   K +          +V +L + +   NV++     
Sbjct: 31  VLGHGAEGTIVYRGMFDNRDVAV---KRILPECFSFADREVQLLRESDEHPNVIRYFCTE 87

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            + +   +  E      L +Y+ +++   
Sbjct: 88  KDRQFQYIAIELCA-ATLQEYVEQKDFAH 115

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 20/93 (21%), Positives = 41/93 (44%), Gaps = 9/93 (9%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
            LG G  G VH+ +  A  R+   K       + K       N++ I++Q+++  ++ L 
Sbjct: 58  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDK---YTVKNEISIMNQLHHPKLINLH 114

Query: 77  GCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDF 108
               E +  + L+ E++  G L D +  ++   
Sbjct: 115 DAF-EDKYEMVLILEFLSGGELFDRIAAEDYKM 146

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 38.6 bits (91), Expect = 4e-04
 Identities = 29/128 (22%), Positives = 48/128 (37%), Gaps = 28/128 (21%)

Query: 22  LGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK-----VVILSQINYRNVVKLL 76
           +G+G  G V+K         A+KK ++    K DE I       + IL ++ + N+VKL 
Sbjct: 10  IGEGTYGVVYKAQNNYGETFALKKIRL---EKEDEGIPSTTIREISILKELKHSNIVKLY 66

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWK 136
                 +  +LV+E++   +L   L                               K + 
Sbjct: 67  DVIHTKKRLVLVFEHLDQ-DLKKLLDVCEGGLESVT-------------------AKSFL 106

Query: 137 QQLLKGLA 144
            QLL G+A
Sbjct: 107 LQLLNGIA 114

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 17/91 (18%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDE--FINKVVILSQINYRNVVK 74
           V+G+G    V + +     +  AVK    +K      L       +  I   + + ++V+
Sbjct: 31  VIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVE 90

Query: 75  LLGCCLETEVPL-LVYEYIPNGNLSDYLHEQ 104
           LL     ++  L +V+E++   +L   + ++
Sbjct: 91  LLETY-SSDGMLYMVFEFMDGADLCFEIVKR 120

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 27/129 (20%), Positives = 44/129 (34%), Gaps = 29/129 (22%)

Query: 22  LGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINK-----VVILSQINYRNVVKL 75
           +G+G  G V K       +IVA+KK       + D  I K     + +L Q+ + N+V L
Sbjct: 11  IGEGSYGVVFKCRNRDTGQIVAIKKFLE---SEDDPVIKKIALREIRMLKQLKHPNLVNL 67

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIW 135
           L          LV+EY  +  +   L        + +                    K  
Sbjct: 68  LEVFRRKRRLHLVFEYCDH-TVLHELDRYQRGVPEHL-------------------VKSI 107

Query: 136 KQQLLKGLA 144
             Q L+ + 
Sbjct: 108 TWQTLQAVN 116

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 16/92 (17%)

Query: 21  VLGQGGQGTVHKGMLADER----IVAVK---KSKVVGKG-----KLDEFINKVVILSQIN 68
            LG G  G V    LA ER     VA++   K K                 ++ IL ++N
Sbjct: 142 TLGSGACGEVK---LAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLN 198

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDY 100
           +  ++K+     + E   +V E +  G L D 
Sbjct: 199 HPCIIKIKNFF-DAEDYYIVLELMEGGELFDK 229

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKL---DEFINKVVILSQINYRNVV 73
            LG G    V K    +     A K   K +     +    +E   +V IL Q+ + N++
Sbjct: 19  ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNII 78

Query: 74  KLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
            L     E    + L+ E +  G L D+L ++ 
Sbjct: 79  TLHDVY-ENRTDVVLILELVSGGELFDFLAQKE 110

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 38.3 bits (90), Expect = 5e-04
 Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 9/101 (8%)

Query: 13  TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKL---DEFINKVVILS 65
            DH  +   LG G    V K       +  A K   K ++    +    +E   +V IL 
Sbjct: 4   EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR 63

Query: 66  QINYRNVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
           +I + N++ L     E +  + L+ E +  G L D+L E+ 
Sbjct: 64  EIRHPNIITLHDIF-ENKTDVVLILELVSGGELFDFLAEKE 103

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 9/93 (9%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKL---DEFINKVVILSQINYRNVV 73
            LG G    V K    +     A K   K +     +    +E   +V IL Q+ + NV+
Sbjct: 19  ELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVI 78

Query: 74  KLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
            L     E    + L+ E +  G L D+L ++ 
Sbjct: 79  TLHDVY-ENRTDVVLILELVSGGELFDFLAQKE 110

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 37.7 bits (88), Expect = 9e-04
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 10/79 (12%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
           V+G G  G V +  L +   VA+KK     + K  E    + I+  + + NVV L     
Sbjct: 47  VIGNGSFGVVFQAKLVESDEVAIKKVLQDKRFKNRE----LQIMRIVKHPNVVDLKAFFY 102

Query: 81  ET-----EVPL-LVYEYIP 93
                  EV L LV EY+P
Sbjct: 103 SNGDKKDEVFLNLVLEYVP 121

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 37.6 bits (88), Expect = 9e-04
 Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 8/91 (8%)

Query: 21  VLGQGGQGTVHKG-MLADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
            LG G  G VH     +      +K   K +   +  +++   ++ +L  +++ N++K+ 
Sbjct: 29  KLGSGAFGDVHLVEERSSGLERVIKTINKDRS--QVPMEQIEAEIEVLKSLDHPNIIKIF 86

Query: 77  GCCLETEVPL-LVYEYIPNGNLSDYLHEQNE 106
               E    + +V E    G L + +     
Sbjct: 87  EVF-EDYHNMYIVMETCEGGELLERIVSAQA 116

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	99.98
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	99.98
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	99.98
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	99.98
4aoj_A	329	High affinity nerve growth factor receptor; transf	99.97
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	99.97
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	99.97
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	99.97
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	99.97
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	99.97
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.97
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.97
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.96
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	99.96
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	99.95
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.95
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	99.95
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	99.95
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	99.93
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	99.93
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	99.92
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	99.92
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.92
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.92
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	99.92
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	99.92
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.92
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	99.92
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	99.91
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	99.91
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	99.91
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	99.91
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.91
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.91
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	99.91
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	99.91
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.91
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	99.91
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	99.91
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	99.91
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	99.91
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	99.91
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.91
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	99.91
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	99.91
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	99.91
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.91
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	99.91
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.9
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	99.9
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.9
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	99.9
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	99.9
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.9
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.9
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	99.9
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	99.9
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	99.9
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.9
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	99.9
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	99.9
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	99.9
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.9
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.9
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.9
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	99.9
3niz_A	311	Rhodanese family protein; structural genomics, str	99.9
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	99.9
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.9
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	99.9
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	99.9
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	99.9
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	99.9
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	99.9
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.9
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	99.9
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	99.9
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.9
3ork_A	311	Serine/threonine protein kinase; structural genomi	99.9
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	99.9
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	99.9
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.89
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.89
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.89
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	99.89
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	99.89
3o0g_A	292	Cell division protein kinase 5; kinase activator c	99.89
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	99.89
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	99.89
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	99.89
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	99.89
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.89
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	99.89
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	99.89
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	99.89
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	99.89
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	99.89
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	99.89
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.89
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.89
3rp9_A	458	Mitogen-activated protein kinase; structural genom	99.89
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.89
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	99.89
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	99.89
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	99.89
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	99.89
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.89
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.89
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.89
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	99.89
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.89
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.89
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	99.89
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.89
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.89
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.89
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.89
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.89
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.89
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.89
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.89
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	99.89
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	99.88
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	99.88
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	99.88
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.88
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	99.88
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.88
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	99.88
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	99.88
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.88
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	99.88
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	99.88
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	99.88
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	99.88
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	99.88
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	99.88
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	99.88
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.88
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	99.88
3bhy_A	283	Death-associated protein kinase 3; death associate	99.88
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.88
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	99.88
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	99.88
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	99.88
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.88
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	99.88
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	99.88
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	99.88
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	99.88
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	99.88
3uqc_A	286	Probable conserved transmembrane protein; structur	99.88
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.88
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	99.87
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	99.87
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	99.87
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.87
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	99.87
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	99.87
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	99.87
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.87
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	99.87
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	99.87
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	99.87
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.87
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	99.87
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.87
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	99.87
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	99.87
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.87
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.87
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.87
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.87
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	99.87
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.87
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	99.87
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	99.87
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.87
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.87
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	99.87
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.87
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	99.87
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	99.87
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.87
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.87
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	99.87
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	99.87
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.86
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	99.86
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.86
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.86
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	99.86
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.86
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	99.86
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.86
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	99.86
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	99.86
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	99.86
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	99.86
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	99.86
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.86
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.86
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.86
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.86
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.86
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.86
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	99.85
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.85
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.85
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	99.85
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	99.85
3an0_A	340	Dual specificity mitogen-activated protein kinase;	99.85
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.85
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	99.85
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.85
3fme_A	290	Dual specificity mitogen-activated protein kinase;	99.85
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.84
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.84
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.84
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.84
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	99.84
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	99.84
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	99.84
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.84
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.83
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.83
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	99.83
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.83
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	99.83
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	99.83
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	99.83
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.82
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	99.82
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	99.82
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	99.82
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.82
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.82
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.82
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	99.82
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	99.81
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.81
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	99.81
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.81
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.81
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	99.8
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.8
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	99.79
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.79
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.78
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	99.78
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.68
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	99.64
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	99.46
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	99.01
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	98.9
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	98.07
3d1u_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	97.9
4gkh_A	272	Aminoglycoside 3'-phosphotransferase APHA1-IAB; py	97.76
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	97.32
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	96.82
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	96.5
3f7w_A	288	Putative fructosamine-3-kinase; YP_290396.1, struc	96.42
3jr1_A	312	Putative fructosamine-3-kinase; YP_719053.1, struc	95.64
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	95.58
2olc_A	397	MTR kinase, methylthioribose kinase; kinase ADP-2H	95.13
3ats_A	357	Putative uncharacterized protein; hypothetical pro	94.05
3dxq_A	301	Choline/ethanolamine kinase family protein; NP_106	89.6
2q83_A	346	YTAA protein; 2635576, structural genomics, joint	87.31
3cxl_A	463	N-chimerin; SH2, RHO-GAP, structural genomics cons	86.78
3csv_A	333	Aminoglycoside phosphotransferase; YP_614837.1, ph	84.51
1nw1_A	429	Choline kinase (49.2 KD); phospholipid synthesis,	82.57
3feg_A	379	Choline/ethanolamine kinase; non-protein kinase, c	81.61

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=3.1e-33  Score=201.86  Aligned_cols=139  Identities=22%  Similarity=0.288  Sum_probs=125.1

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +.|++.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+.+++.++||||+++++++.+++.+|+|||||
T Consensus        74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~ivmEy~  153 (346)
T 4fih_A           74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEFL  153 (346)
T ss_dssp             GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEECCC
T ss_pred             HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEeCC
Confidence            5699999999999999999995 579999999987665556677889999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+|.+++.............+.|++.|+.|      +|||+|++|||   +..+..+||+|||+|+.
T Consensus       154 ~gg~L~~~l~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NIL---l~~~g~vKl~DFGla~~  219 (346)
T 4fih_A          154 EGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSIL---LTHDGRVKLSDFGFCAQ  219 (346)
T ss_dssp             TTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             CCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEE---ECCCCCEEEecCcCcee
Confidence            99999999987666777778888999999988      47999999999   88889999999999873

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=99.98  E-value=7.7e-33  Score=200.09  Aligned_cols=139  Identities=17%  Similarity=0.206  Sum_probs=115.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+++.||+|+||.||+|.. .+|+.||+|.+...  .....+.+.+|+.+++.++||||+++++++.+++.+|+|||
T Consensus        24 e~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~yiVmE  103 (350)
T 4b9d_A           24 EKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEENGSLYIVMD  103 (350)
T ss_dssp             CCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             cceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEECCEEEEEEe
Confidence            5899999999999999999994 57999999988654  34456789999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+||+|.+++.....   .....+..+.|++.|+.|      +|||+|++|||   +.++..+||+|||+|+.
T Consensus       104 y~~gg~L~~~i~~~~~~~~~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NIL---l~~~g~vKl~DFGla~~  174 (350)
T 4b9d_A          104 YCEGGDLFKRINAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIF---LTKDGTVQLGDFGIARV  174 (350)
T ss_dssp             CCTTCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEE---ECTTCCEEECSTTEESC
T ss_pred             CCCCCcHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEE---ECCCCCEEEccccccee
Confidence            9999999999976542   344566678899999988      47999999999   88889999999999984

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=99.98  E-value=1.7e-32  Score=195.27  Aligned_cols=141  Identities=21%  Similarity=0.338  Sum_probs=119.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..++|.+.+.||+|+||.||+|.+.      ++..||+|.++.......+.+.+|+++++.++||||+++++++.+++.+
T Consensus        11 ~r~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~   90 (299)
T 4asz_A           11 KRHNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPL   90 (299)
T ss_dssp             CGGGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSE
T ss_pred             CHHHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEE
Confidence            3467889999999999999999842      4678999998876666677899999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcC--------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           86 LLVYEYIPNGNLSDYLHEQN--------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~--------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      ++|||||++|+|.++++..+              ..+......+.+++.|+.|      +|||+|+.||+   ++.+..+
T Consensus        91 ~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NIL---l~~~~~~  167 (299)
T 4asz_A           91 IMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCL---VGENLLV  167 (299)
T ss_dssp             EEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCE
T ss_pred             EEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEE---ECCCCcE
Confidence            99999999999999998643              1233445567788888888      57999999999   8899999


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      ||+|||+|+.
T Consensus       168 Ki~DFGla~~  177 (299)
T 4asz_A          168 KIGDFGMSRD  177 (299)
T ss_dssp             EECCCSCHHH
T ss_pred             EECCccccee
Confidence            9999999984

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=99.98  E-value=1.3e-32  Score=203.04  Aligned_cols=140  Identities=23%  Similarity=0.288  Sum_probs=126.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .+.|.+.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+.+++.++||||+++++++.+.+.+|+||||
T Consensus       150 ~~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~~~~~iVmEy  229 (423)
T 4fie_A          150 RSYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVGDELWVVMEF  229 (423)
T ss_dssp             GGTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             hHhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEECCEEEEEEeC
Confidence            35799999999999999999995 57999999998776666667789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+|.++++............+.+++.||.|+      |||+|++|||   +..+..+||+|||+|+.
T Consensus       230 ~~gG~L~~~i~~~~l~e~~~~~~~~qil~aL~ylH~~~IiHRDiKp~NIL---l~~~g~vKl~DFGla~~  296 (423)
T 4fie_A          230 LEGGALTDIVTHTRMNEEQIAAVCLAVLQALSVLHAQGVIHRDIKSDSIL---LTHDGRVKLSDFGFCAQ  296 (423)
T ss_dssp             CTTEEHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSTTTEE---ECTTCCEEECCCTTCEE
T ss_pred             CCCCcHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEE---EcCCCCEEEecCccceE
Confidence            9999999999877667777788889999999884      7999999999   88889999999999873

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=99.98  E-value=1.1e-32  Score=196.37  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=123.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|.+.+.||+|+||+||+|.. .+++.+|+|.+...   .....+.+.+|+++++.++||||+++++++.+++.+|+|
T Consensus        31 ~~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~yiv  110 (311)
T 4aw0_A           31 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG  110 (311)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             ccccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            35799999999999999999994 68999999987542   334567899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+||+|.+++++.+. ........+.|++.|+.|      +|||+||+||+   +..+..+||+|||+|+.
T Consensus       111 mEy~~gG~L~~~i~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNIL---l~~~g~vKl~DFGla~~  181 (311)
T 4aw0_A          111 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENIL---LNEDMHIQITDFGTAKV  181 (311)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeE---EcCCCCEEEEEcCCcee
Confidence            999999999999987654 556667778899999988      46999999999   88889999999999984

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=99.97  E-value=5.9e-32  Score=194.78  Aligned_cols=140  Identities=21%  Similarity=0.368  Sum_probs=116.9

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .+++.+.+.||+|+||.||+|.+.      ++..||+|.++.......+.|.+|+++++.++||||+++++++.+.+.++
T Consensus        40 ~~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~~~~~  119 (329)
T 4aoj_A           40 RRDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEGRPLL  119 (329)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEE
Confidence            456788889999999999999853      47889999998766666788999999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           87 LVYEYIPNGNLSDYLHEQNE----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                      +|||||++|+|.++++....                .+......+.+++.|+.|      +|||+|+.||+   ++.+..
T Consensus       120 lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NIL---l~~~~~  196 (329)
T 4aoj_A          120 MVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCL---VGQGLV  196 (329)
T ss_dssp             EEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EETTTE
T ss_pred             EEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEE---ECCCCc
Confidence            99999999999999986431                223344567788888888      57999999999   889999


Q ss_pred             ccccccchhhh
Q 040049          145 PKRKKFEEEKW  155 (167)
Q Consensus       145 ~~l~df~~~~~  155 (167)
                      +||+|||+|+.
T Consensus       197 ~Ki~DFGla~~  207 (329)
T 4aoj_A          197 VKIGDFGMSRD  207 (329)
T ss_dssp             EEECCCC----
T ss_pred             EEEccccccee
Confidence            99999999983

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=99.97  E-value=4.2e-31  Score=188.76  Aligned_cols=140  Identities=19%  Similarity=0.261  Sum_probs=116.3

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .+++.+.+.||+|+||.||+|.+.      +++.||+|.++.. .....+.|.+|+.+++.++||||++++|++.+++.+
T Consensus        25 ~~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~~~~  104 (308)
T 4gt4_A           25 LSAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKDQPL  104 (308)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HHHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEECCEE
Confidence            345677889999999999999852      4678999998654 334567899999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~  142 (167)
                      ++|||||++|+|.+++.....                 .+......+.+++.|+.|      +|||+|+.||+   ++.+
T Consensus       105 ~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NIL---l~~~  181 (308)
T 4gt4_A          105 SMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVL---VYDK  181 (308)
T ss_dssp             EEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGG
T ss_pred             EEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceE---ECCC
Confidence            999999999999999975421                 233445567788889988      57999999999   8899


Q ss_pred             CCccccccchhhh
Q 040049          143 LAPKRKKFEEEKW  155 (167)
Q Consensus       143 ~~~~l~df~~~~~  155 (167)
                      ..+||+|||+|+.
T Consensus       182 ~~~Ki~DFGlar~  194 (308)
T 4gt4_A          182 LNVKISDLGLFRE  194 (308)
T ss_dssp             GCEEECCSCCBCG
T ss_pred             CCEEECCccccee
Confidence            9999999999984

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=99.97  E-value=4.8e-31  Score=185.45  Aligned_cols=139  Identities=17%  Similarity=0.224  Sum_probs=114.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.||+|.+...   .......+.+|+.+++.++||||+++++++.+++.+|+|
T Consensus        12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv   91 (275)
T 3hyh_A           12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSKDEIIMV   91 (275)
T ss_dssp             --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEEEE
Confidence            47899999999999999999994 57999999987643   234456789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||| +|+|.+.+.+... +.......+.|++.|+.|      +|||+||+||+   +..+..+||+|||+|+.
T Consensus        92 mEy~-~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NIL---l~~~~~vkl~DFGla~~  161 (275)
T 3hyh_A           92 IEYA-GNELFDYIVQRDKMSEQEARRFFQQIISAVEYCHRHKIVHRDLKPENLL---LDEHLNVKIADFGLSNI  161 (275)
T ss_dssp             EECC-CEEHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEE---ECTTCCEEECCSSCC--
T ss_pred             EeCC-CCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCChHHeE---ECCCCCEEEeecCCCee
Confidence            9999 6799999987654 556667778899999988      57999999999   88889999999999984

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=99.97  E-value=6.6e-31  Score=187.20  Aligned_cols=139  Identities=17%  Similarity=0.213  Sum_probs=113.2

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC--------
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETE--------   83 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~--------   83 (167)
                      ++|++++.||+|+||.||+|.. .+++.||+|.++... ....+.+.+|+.+++.++||||+++++++.+.+        
T Consensus         5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~   84 (299)
T 4g31_A            5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS   84 (299)
T ss_dssp             HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred             hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence            4689999999999999999995 579999999886543 334567899999999999999999999986543        


Q ss_pred             ----cceEEEecCCCCCHHHHHhhcCcch----HhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccc
Q 040049           84 ----VPLLVYEYIPNGNLSDYLHEQNEDF----VKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        84 ----~~~lv~e~~~~g~L~~~i~~~~~~~----~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                          .+|++||||++|+|.+++.......    ...+..+.|++.|+.|      +|||+||+||+   +..+..+||+|
T Consensus        85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NIL---l~~~~~vKl~D  161 (299)
T 4g31_A           85 SPKVYLYIQMQLCRKENLKDWMNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIF---FTMDDVVKVGD  161 (299)
T ss_dssp             --CEEEEEEEECCCSCCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECC
T ss_pred             CCCcEEEEEEecCCCCcHHHHHHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeE---ECCCCcEEEcc
Confidence                3789999999999999998765322    2344567788889988      57999999999   88889999999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||+|+.
T Consensus       162 FGla~~  167 (299)
T 4g31_A          162 FGLVTA  167 (299)
T ss_dssp             CCCC--
T ss_pred             Ccccee
Confidence            999874

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=99.97  E-value=1.8e-31  Score=189.97  Aligned_cols=140  Identities=19%  Similarity=0.114  Sum_probs=114.8

Q ss_pred             hcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|++.+.||+|+||+||+|+..    +++.||+|.+....  ......+.+|+.+++.++||||+++++++.+++.+|
T Consensus        23 p~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~  102 (304)
T 3ubd_A           23 PSQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQTEGKLY  102 (304)
T ss_dssp             GGGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEETTEEE
T ss_pred             ccccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEECCEEE
Confidence            367999999999999999999842    46889999876432  223346788999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|||||+||+|.+++.+... ........+.|++.|+.|      +|||+||+||+   +..+..+||+|||+|+.
T Consensus       103 ivmEy~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NIL---l~~~g~vKl~DFGla~~  175 (304)
T 3ubd_A          103 LILDFLRGGDLFTRLSKEVMFTEEDVKFYLAELALALDHLHSLGIIYRDLKPENIL---LDEEGHIKLTDFGLSKE  175 (304)
T ss_dssp             EEECCCTTCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEE---ECTTSCEEEESSEEEEC
T ss_pred             EEEEcCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeE---EcCCCCEEeccccccee
Confidence            99999999999999987654 555666778889989888      57999999999   88889999999999984

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=99.97  E-value=1e-30  Score=188.24  Aligned_cols=135  Identities=16%  Similarity=0.174  Sum_probs=115.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .+.|...+.||+|+||.||+|.. .+|+.||+|.++.....     .+|+.+++.++||||+++++++.+++.+|+||||
T Consensus        57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~~-----~~E~~il~~l~HpnIV~l~~~~~~~~~~~ivmEy  131 (336)
T 4g3f_A           57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVFR-----VEELVACAGLSSPRIVPLYGAVREGPWVNIFMEL  131 (336)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCC-----THHHHTTTTCCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHhH-----HHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEec
Confidence            45677888999999999999995 57999999998654322     3699999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-Cccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-APKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-~~~l~df~~~~~  155 (167)
                      |+||+|.+++++.+. +.......+.|++.|+.|      +|||+||+|||   +..+. .+||+|||+|+.
T Consensus       132 ~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NIL---l~~~g~~vKl~DFGla~~  200 (336)
T 4g3f_A          132 LEGGSLGQLIKQMGCLPEDRALYYLGQALEGLEYLHTRRILHGDVKADNVL---LSSDGSRAALCDFGHALC  200 (336)
T ss_dssp             CTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEE---ECTTSCCEEECCCTTCEE
T ss_pred             cCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecccCHHHEE---EeCCCCEEEEeeCCCCeE
Confidence            999999999987653 556677778899999988      57999999999   77665 699999999974

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=99.97  E-value=2.8e-30  Score=184.11  Aligned_cols=138  Identities=25%  Similarity=0.345  Sum_probs=115.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..+++.+.+.||+|+||.||+|.+.  ..+|+|.++..  .....+.+.+|+.+++.++||||+++++++. ++.+++||
T Consensus        34 ~~~~l~l~~~iG~G~fG~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~-~~~~~iVm  110 (307)
T 3omv_A           34 EASEVMLSTRIGSGSFGTVYKGKWH--GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMT-KDNLAIVT  110 (307)
T ss_dssp             CTTSCCEEEECCCCSSSEEEEEESS--SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEEEE
T ss_pred             cHHHeEEeeEEeeCCCcEEEEEEEC--CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEE-CCeEEEEE
Confidence            4567888999999999999999853  35899987643  3345677999999999999999999999875 46789999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||++|+|.+++.....  ........+.+++.|+.|      +|||+|+.|||   ++.+..+||+|||+|+.
T Consensus       111 Ey~~gGsL~~~l~~~~~~l~~~~~~~i~~qia~gL~yLH~~~IiHRDlKp~NIL---l~~~~~~Ki~DFGla~~  181 (307)
T 3omv_A          111 QWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIF---LHEGLTVKIGDFGLATV  181 (307)
T ss_dssp             ECCSSCBHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCSSSEE---EETTEEEEECCCSSCBC
T ss_pred             EcCCCCCHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCccCHHHEE---ECCCCcEEEeeccCcee
Confidence            99999999999976533  445566678889999988      57999999999   88899999999999974

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=99.97  E-value=3e-30  Score=182.73  Aligned_cols=137  Identities=20%  Similarity=0.218  Sum_probs=113.1

Q ss_pred             CcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcceEE
Q 040049           16 LNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVPLLV   88 (167)
Q Consensus        16 ~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~~lv   88 (167)
                      |...+.||+|+||.||+|.. .++..||+|.+...  .....+.+.+|+.+++.++||||+++++++.+    ++.+|+|
T Consensus        28 ~~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~lv  107 (290)
T 3fpq_A           28 LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVLV  107 (290)
T ss_dssp             EEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEEETTEEEEEEE
T ss_pred             EEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeeccCCCcEEEEE
Confidence            35667899999999999995 57899999987543  33456779999999999999999999999865    3458999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      ||||+||+|.+++.+... +.......+.+++.|+.|        +|||+||+|||   ++. +..+||+|||+|+.
T Consensus       108 mEy~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NIL---l~~~~g~vKl~DFGla~~  181 (290)
T 3fpq_A          108 TELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIF---ITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEE---ESSTTSCEEECCTTGGGG
T ss_pred             EeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhhee---EECCCCCEEEEeCcCCEe
Confidence            999999999999987653 455556667788888866        57899999998   653 67899999999984

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=99.96  E-value=6.1e-30  Score=182.69  Aligned_cols=135  Identities=19%  Similarity=0.221  Sum_probs=112.1

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHH--HHHHHHhcCCCCceeeeeeeeecCC----cceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFI--NKVVILSQINYRNVVKLLGCCLETE----VPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~--~e~~~~~~l~h~~i~~l~~~~~~~~----~~~l   87 (167)
                      ++|.+.+.||+|+||.||+|.+ +|+.||+|.+....   ...+.  .|+..+..++||||+++++++..++    .+++
T Consensus         3 r~i~L~~~iG~G~fG~Vy~~~~-~g~~VAvK~l~~~~---~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~l   78 (303)
T 3hmm_A            3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSRE---ERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEEECSSSEEEEEEE-TTEEEEEEEECGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECccc---hhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEE
Confidence            5688889999999999999987 68999999886432   23333  4555666789999999999997653    4799


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh--------------hhcccchhHHHHhhhccCCccccccchh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL--------------KRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~--------------h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      |||||++|+|.++++..............+++.|++|+              |||+|+.|||   ++.+..+||+|||+|
T Consensus        79 V~Ey~~~gsL~~~l~~~~l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NIL---l~~~~~~Ki~DFGla  155 (303)
T 3hmm_A           79 VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL---VKKNGTCCIADLGLA  155 (303)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEE---ECTTSCEEECCCTTC
T ss_pred             EecCCCCCcHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEE---ECCCCCEEEEeCCCC
Confidence            99999999999999987666666777788888888764              7899999999   889999999999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       156 ~~  157 (303)
T 3hmm_A          156 VR  157 (303)
T ss_dssp             EE
T ss_pred             cc
Confidence            73

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=99.96  E-value=3.2e-29  Score=181.99  Aligned_cols=148  Identities=25%  Similarity=0.310  Sum_probs=119.6

Q ss_pred             cHHHHHhhhcCCcccceecccCceeEEEEEeC-C-----CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCC-Cceeeee
Q 040049            5 SAKELDKATDHLNVNIVLGQGGQGTVHKGMLA-D-----ERIVAVKKSKVVG-KGKLDEFINKVVILSQINY-RNVVKLL   76 (167)
Q Consensus         5 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~-----~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h-~~i~~l~   76 (167)
                      +.+++....++|.+.+.||+|+||.||+|.+. .     ++.||+|.+.... ....+.+.+|+.++..+.| |||++++
T Consensus        55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~  134 (353)
T 4ase_A           55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL  134 (353)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            34456667789999999999999999999842 2     3679999886543 3445679999999999965 9999999


Q ss_pred             eeeecC-CcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccch
Q 040049           77 GCCLET-EVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKN  132 (167)
Q Consensus        77 ~~~~~~-~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~  132 (167)
                      ++|..+ +.+++|||||++|+|.++++....                 ........+.|++.|+.|      +|||+|+.
T Consensus       135 g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~  214 (353)
T 4ase_A          135 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  214 (353)
T ss_dssp             EEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGG
T ss_pred             EEEEecCCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCcc
Confidence            998664 568999999999999999986431                 223344556788889888      57999999


Q ss_pred             hHHHHhhhccCCccccccchhhh
Q 040049          133 KIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       133 ~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+   ++.+..+||+|||+|+.
T Consensus       215 NIL---l~~~~~vKi~DFGlar~  234 (353)
T 4ase_A          215 NIL---LSEKNVVKICDFGLARD  234 (353)
T ss_dssp             GEE---ECGGGCEEECCCGGGSC
T ss_pred             cee---eCCCCCEEECcchhhhh
Confidence            999   88899999999999983

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=99.95  E-value=2.8e-28  Score=179.63  Aligned_cols=138  Identities=16%  Similarity=0.208  Sum_probs=117.3

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC------Cc
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET------EV   84 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~~   84 (167)
                      ++|.+++.||+|+||.||+|.. .+|+.||+|.+....  ....+.+.+|+.+++.++||||+++++++...      +.
T Consensus        54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~  133 (398)
T 4b99_A           54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS  133 (398)
T ss_dssp             SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred             CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence            5799999999999999999995 589999999986542  33456788999999999999999999987643      56


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|+|||||+ |+|.+.+..... ........+.|++.|+.|      +|||+||+||+   +..+..+|++|||+|+.
T Consensus       134 ~~ivmE~~~-g~L~~~i~~~~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl---~~~~~~~Ki~DFGla~~  207 (398)
T 4b99_A          134 VYVVLDLME-SDLHQIIHSSQPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLL---VNENCELKIGDFGMARG  207 (398)
T ss_dssp             EEEEEECCS-EEHHHHHTSSSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTCCEEECCCTTCBC
T ss_pred             EEEEEeCCC-CCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccc---cCCCCCEEEeecceeee
Confidence            899999996 589999987653 556677778899999988      57999999999   88889999999999973

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.95  E-value=6.3e-28  Score=185.12  Aligned_cols=140  Identities=17%  Similarity=0.238  Sum_probs=121.1

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.+|+|.+......+.+.+.+|+.+|+.++||||+++++++.+++.+|++|||
T Consensus       156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~~~~~~iv~E~  235 (573)
T 3uto_A          156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  235 (573)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEee
Confidence            36899999999999999999994 58999999998766666677889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc--cCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK--GLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~--~~~~~l~df~~~~~  155 (167)
                      |+||+|.+++.....  ........+.|++.|+.|+      |||+|++|++   +..  ...+||+|||+|+.
T Consensus       236 ~~gg~L~~~i~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nil---l~~~~~~~vKl~DFG~a~~  306 (573)
T 3uto_A          236 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIM---FTTKRSNELKLIDFGLTAH  306 (573)
T ss_dssp             CCCCBHHHHHTCTTSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSSSCCCEEECCCSSCEE
T ss_pred             cCCCcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhcc---ccCCCCCCEEEeeccceeE
Confidence            999999999975432  4556667788899998884      6999999998   654  36789999999874

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=99.95  E-value=5.4e-28  Score=186.44  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=116.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHH---HHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINK---VVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e---~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|.+...   .........+|   +.+++.++||||+++++++.+.+.+
T Consensus       188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~~~~l  267 (689)
T 3v5w_A          188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL  267 (689)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEECCEE
Confidence            47899999999999999999994 58999999987532   11222333333   5667778999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|||||+||+|.+.+.+.+. .......++.+++.|+.|      +|||+||+|||   ++.++.+||+|||+|+.
T Consensus       268 ylVmEy~~GGdL~~~l~~~~~l~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNIL---ld~~G~vKL~DFGlA~~  341 (689)
T 3v5w_A          268 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL---LDEHGHVRISDLGLACD  341 (689)
T ss_dssp             EEEECCCCSCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEEEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeE---EeCCCCEEecccceeee
Confidence            999999999999999987654 556667778889888888      46999999999   88999999999999873

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=99.95  E-value=2e-27  Score=173.31  Aligned_cols=139  Identities=14%  Similarity=0.171  Sum_probs=116.5

Q ss_pred             HhhhcCCcccceecccCceeEEEEEe----CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCc
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEV   84 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~   84 (167)
                      ....++|.+.+.||+|+||.||+|..    .+++.||+|.+...  .....+.+|+.+++.+ +||||+++++++.+.+.
T Consensus        17 p~l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~~~~   94 (361)
T 4f9c_A           17 PQLSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRKNDH   94 (361)
T ss_dssp             GGGGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEETTE
T ss_pred             CCccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEECCE
Confidence            34567899999999999999999974    24688999987543  3346788999999988 69999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      +|+|||||++|+|.+.++.  .........+.|++.|+.|      +|||+||+||+   +..+ ..+||+|||+|+.
T Consensus        95 ~~lvmE~~~g~~L~~~~~~--l~~~~~~~~~~qll~al~ylH~~gIiHRDiKPeNiL---l~~~~~~~kl~DFGla~~  167 (361)
T 4f9c_A           95 VVIAMPYLEHESFLDILNS--LSFQEVREYMLNLFKALKRIHQFGIVHRDVKPSNFL---YNRRLKKYALVDFGLAQG  167 (361)
T ss_dssp             EEEEEECCCCCCHHHHHTT--CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EETTTTEEEECCCTTCEE
T ss_pred             EEEEEeCCCcccHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHCCeEeCcCCHHHeE---EeCCCCeEEECcCCCCcc
Confidence            9999999999999999864  3455666778888888887      57999999999   6655 6789999999973

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=99.93  E-value=1.3e-25  Score=159.98  Aligned_cols=140  Identities=22%  Similarity=0.246  Sum_probs=124.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        18 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   97 (297)
T 3fxz_A           18 PKKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVME   97 (297)
T ss_dssp             GGGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             hhhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEECCEEEEEEE
Confidence            456899999999999999999984 6789999998876656667788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++|+|.+++..........+..+.+++.++.+      +|+|++++||+   +..+..++|+|||++.
T Consensus        98 ~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil---~~~~~~~kl~Dfg~~~  164 (297)
T 3fxz_A           98 YLAGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL---LGMDGSVKLTDFGFCA  164 (297)
T ss_dssp             CCTTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCCTTCE
T ss_pred             CCCCCCHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEE---ECCCCCEEEeeCCCce
Confidence            9999999999987766666777778888888887      47899999999   8888899999999876

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=99.93  E-value=7.4e-26  Score=163.28  Aligned_cols=147  Identities=18%  Similarity=0.211  Sum_probs=123.8

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ..+.....++|.+.+.||+|+||.||+|.. .+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++.+.
T Consensus         7 ~~~~~~~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~   86 (328)
T 3fe3_A            7 CADEQPHIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIETE   86 (328)
T ss_dssp             ----CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             ccccCCccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC
Confidence            344455678999999999999999999995 68999999987543  344566788999999999999999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +..++|+||+++|+|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++++|||+++.
T Consensus        87 ~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIl---l~~~~~~kl~DFG~a~~  163 (328)
T 3fe3_A           87 KTLYLIMEYASGGEVFDYLVAHGRMKEKEARSKFRQIVSAVQYCHQKRIVHRDLKAENLL---LDADMNIKIADFGFSNE  163 (328)
T ss_dssp             SEEEEEECCCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECSTTCCGG
T ss_pred             CEEEEEEECCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCCHHHEE---EcCCCCEEEeeccCcee
Confidence            999999999999999999976543 556667778888888887      47999999999   88889999999999873

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=99.92  E-value=4.9e-25  Score=158.50  Aligned_cols=150  Identities=20%  Similarity=0.223  Sum_probs=129.0

Q ss_pred             cccHHHHHhhhcC----------CcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc
Q 040049            3 IFSAKELDKATDH----------LNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN   71 (167)
Q Consensus         3 ~~~~~~~~~~~~~----------~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~   71 (167)
                      .++++++...++.          |...+.||+|+||.||++... +|+.||+|.+........+.+.+|+.+++.++|||
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n  103 (321)
T 2c30_A           24 VVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHFN  103 (321)
T ss_dssp             -CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCTT
T ss_pred             cCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCCC
Confidence            4677777766653          677789999999999999954 79999999987766667788999999999999999


Q ss_pred             eeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           72 VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        72 i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                      |+++++++...+..++||||+++++|.+++..........+..+.+++.++.+      +|+|+++.||+   +..+..+
T Consensus       104 iv~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~  180 (321)
T 2c30_A          104 VVEMYKSYLVGEELWVLMEFLQGGALTDIVSQVRLNEEQIATVCEAVLQALAYLHAQGVIHRDIKSDSIL---LTLDGRV  180 (321)
T ss_dssp             BCCEEEEEEETTEEEEEECCCCSCBHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCE
T ss_pred             cceEEEEEEECCEEEEEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---ECCCCcE
Confidence            99999999999999999999999999999887655666777778888888877      47899999999   7888899


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +++|||.++.
T Consensus       181 kl~Dfg~~~~  190 (321)
T 2c30_A          181 KLSDFGFCAQ  190 (321)
T ss_dssp             EECCCTTCEE
T ss_pred             EEeeeeeeee
Confidence            9999998763

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=99.92  E-value=5.7e-26  Score=168.22  Aligned_cols=145  Identities=19%  Similarity=0.198  Sum_probs=122.7

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      .++....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|..++..++||||+++++++.+.
T Consensus        62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~  141 (410)
T 3v8s_A           62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQDD  141 (410)
T ss_dssp             HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEEC
Confidence            34455668999999999999999999995 47899999987532   122234577899999999999999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +.+|+||||++||+|.++++.........+..+.+++.++.+      +|+|+|++||+   ++.+..++|+|||+++
T Consensus       142 ~~~~lV~E~~~gg~L~~~l~~~~~~e~~~~~~~~qi~~aL~~LH~~givHrDLKp~NIL---l~~~g~ikL~DFG~a~  216 (410)
T 3v8s_A          142 RYLYMVMEYMPGGDLVNLMSNYDVPEKWARFYTAEVVLALDAIHSMGFIHRDVKPDNML---LDKSGHLKLADFGTCM  216 (410)
T ss_dssp             SEEEEEECCCTTEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCE
T ss_pred             CEEEEEEeCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHee---ECCCCCEEEeccceeE
Confidence            999999999999999999987665666667778888888877      47899999999   8888999999999986

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.92  E-value=9.6e-26  Score=162.01  Aligned_cols=149  Identities=27%  Similarity=0.433  Sum_probs=126.7

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      +++.++...+++|.+.+.||+|+||.||++...+++.+|+|.+........+.+.+|+.+++.++||||+++++++...+
T Consensus        29 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~  108 (321)
T 2qkw_B           29 VPLVDLEEATNNFDHKFLIGHGVFGKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDERN  108 (321)
T ss_dssp             -CCSCCCCCCCCCSCCCCSCBCSSSEEEEEECTTCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCCTT
T ss_pred             ecHHHHHHHHhccCccceeecCCCeeEEEEEECCCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcCCC
Confidence            44455566788999999999999999999997788999999887666666788999999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ..++|+||+++|+|.+++....     ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.
T Consensus       109 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~  185 (321)
T 2qkw_B          109 EMILIYKYMENGNLKRHLYGSDLPTMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINIL---LDENFVPKITDFGI  185 (321)
T ss_dssp             CCEEEEECCTTCBTGGGSSSSCCCSCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEE---ECTTCCEEECCCTT
T ss_pred             eEEEEEEcCCCCcHHHHHhccCCCccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEE---ECCCCCEEEeeccc
Confidence            9999999999999999987643     2334555667778888877      47899999999   78888999999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       186 ~~~  188 (321)
T 2qkw_B          186 SKK  188 (321)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            863

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.92  E-value=6.6e-25  Score=156.89  Aligned_cols=141  Identities=17%  Similarity=0.264  Sum_probs=122.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++.+.+..++|+|
T Consensus         8 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~e   87 (310)
T 3s95_A            8 RPSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKDKRLNFITE   87 (310)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ChhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecCCeeEEEEE
Confidence            457899999999999999999995 5789999998876666677889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        88 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~~~~  157 (310)
T 3s95_A           88 YIKGGTLRGIIKSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCL---VRENKNVVVADFGLARL  157 (310)
T ss_dssp             CCTTCBHHHHHHHCCTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE---ECTTSCEEECCCTTCEE
T ss_pred             ecCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCcCeEE---ECCCCCEEEeeccccee
Confidence            9999999999987432  445566667888888877      46899999999   88888999999999863

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=99.92  E-value=1.1e-25  Score=167.81  Aligned_cols=146  Identities=16%  Similarity=0.144  Sum_probs=121.3

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      +.++....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|..++..++||||+++++++.+
T Consensus        66 ~~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  145 (437)
T 4aw2_A           66 VKQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD  145 (437)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee
Confidence            445556678999999999999999999995 46889999987532   11222347789999999999999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      .+.+|+||||+++|+|.+++....  ......+..+.+++.++.+      +|+|+|++||+   ++.+..++|+|||++
T Consensus       146 ~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NIL---l~~~g~vkL~DFGla  222 (437)
T 4aw2_A          146 DNNLYLVMDYYVGGDLLTLLSKFEDRLPEEMARFYLAEMVIAIDSVHQLHYVHRDIKPDNIL---MDMNGHIRLADFGSC  222 (437)
T ss_dssp             SSEEEEEECCCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTC
T ss_pred             CCEEEEEEecCCCCcHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHhCCeEecccCHHHee---EcCCCCEEEcchhhh
Confidence            999999999999999999998742  2455566667788888877      57999999999   888899999999998


Q ss_pred             h
Q 040049          154 K  154 (167)
Q Consensus       154 ~  154 (167)
                      +
T Consensus       223 ~  223 (437)
T 4aw2_A          223 L  223 (437)
T ss_dssp             E
T ss_pred             h
Confidence            6

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.92  E-value=4e-25  Score=159.01  Aligned_cols=151  Identities=34%  Similarity=0.501  Sum_probs=125.6

Q ss_pred             ccccHHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeee
Q 040049            2 QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCL   80 (167)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~   80 (167)
                      +.|+.+++....++|.+.+.||+|+||.||++...+++.+|+|.+..... .....+.+|+.+++.++||||+++++++.
T Consensus        18 ~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~   97 (326)
T 3uim_A           18 KRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRGFCM   97 (326)
T ss_dssp             EECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCSSSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCEEEC
T ss_pred             ceecHHHHHHHhhccccceeEecCCCcEEEEEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEEEEe
Confidence            56889999999999999999999999999999877889999998765422 22236889999999999999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-----chHhhHHHHHHHHcCchh---------hhhcccchhHHHHhhhccCCcc
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-----DFVKDVGFILSRRGGIPR---------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-----~~~~~~~~~~~i~~~l~~---------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      ..+..++|+||+++|+|.+++.....     .....+..+.+++.++.+         +|+|+++.||+   +..+..++
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil---~~~~~~~k  174 (326)
T 3uim_A           98 TPTERLLVYPYMANGSVASCLRERPESQPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANIL---LDEEFEAV  174 (326)
T ss_dssp             CSSCCEEEEECCTTCBHHHHHHCCSTTCCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEE---ECTTCCEE
T ss_pred             cCCceEEEEEeccCCCHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEE---ECCCCCEE
Confidence            99999999999999999999987542     333445556666666654         57899999999   88888999


Q ss_pred             ccccchhhh
Q 040049          147 RKKFEEEKW  155 (167)
Q Consensus       147 l~df~~~~~  155 (167)
                      |+|||.++.
T Consensus       175 l~Dfg~~~~  183 (326)
T 3uim_A          175 VGDFGLAKL  183 (326)
T ss_dssp             ECCCSSCEE
T ss_pred             eccCccccc
Confidence            999999873

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=99.92  E-value=5e-25  Score=159.49  Aligned_cols=141  Identities=18%  Similarity=0.085  Sum_probs=120.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+.+++
T Consensus         3 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~~~~~~l   82 (337)
T 1o6l_A            3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF   82 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEeCCEEEE
Confidence            357899999999999999999995 57899999987543   23456678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus        83 v~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~g~vkL~DFG~a~~  154 (337)
T 1o6l_A           83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLM---LDKDGHIKITDFGLCKE  154 (337)
T ss_dssp             EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCBC
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEE---ECCCCCEEEeeccchhh
Confidence            9999999999999986543 555666677888888877      46899999999   88889999999999873

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=99.91  E-value=2.6e-25  Score=164.80  Aligned_cols=146  Identities=18%  Similarity=0.163  Sum_probs=122.5

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      +++.....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|..++..++||||+++++++.+
T Consensus        53 ~~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~  132 (412)
T 2vd5_A           53 LKEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD  132 (412)
T ss_dssp             HHHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC
T ss_pred             hhhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee
Confidence            445556678999999999999999999995 57999999987532   12223457789999999999999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      .+.+|+||||+++|+|.+++....  ......+..+.+++.++.+      +|+|+|++||+   ++....++|+|||++
T Consensus       133 ~~~~~lVmE~~~gg~L~~~l~~~~~~l~~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NIL---ld~~g~vkL~DFGla  209 (412)
T 2vd5_A          133 ENYLYLVMEYYVGGDLLTLLSKFGERIPAEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNIL---LDRCGHIRLADFGSC  209 (412)
T ss_dssp             SSEEEEEECCCCSCBHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTC
T ss_pred             CCEEEEEEcCCCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecccCHHHee---ecCCCCEEEeechhh
Confidence            999999999999999999998753  3455566667788888877      57999999999   888899999999998


Q ss_pred             h
Q 040049          154 K  154 (167)
Q Consensus       154 ~  154 (167)
                      +
T Consensus       210 ~  210 (412)
T 2vd5_A          210 L  210 (412)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=99.91  E-value=2.3e-24  Score=157.31  Aligned_cols=141  Identities=23%  Similarity=0.199  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....      ...+.+.+|+.+++.++||||+++++++.+.+.
T Consensus        10 ~~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~   89 (361)
T 2yab_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYENRTD   89 (361)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSE
T ss_pred             hhhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEeCCE
Confidence            457899999999999999999995 5789999998765322      245788999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC----Cccccccchh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL----APKRKKFEEE  153 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~----~~~l~df~~~  153 (167)
                      .++|+||+++|+|.+++..... .....+..+.+++.++.++      |+|++|+||+   +..+.    .++++|||++
T Consensus        90 ~~lv~e~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIl---l~~~~~~~~~vkl~DFG~a  166 (361)
T 2yab_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIM---LLDKNIPIPHIKLIDFGLA  166 (361)
T ss_dssp             EEEEEECCCSCBHHHHHTTCSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESCTTSSSCCEEECCCSSC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---EeCCCCCccCEEEEecCCc
Confidence            9999999999999999986543 5566677788888888874      6899999998   65544    6899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       167 ~~  168 (361)
T 2yab_A          167 HE  168 (361)
T ss_dssp             EE
T ss_pred             eE
Confidence            73

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=99.91  E-value=9.8e-25  Score=158.85  Aligned_cols=141  Identities=20%  Similarity=0.192  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|..++..+ +||||+++++++.+.+.+|
T Consensus        21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  100 (353)
T 3txo_A           21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQTPDRLF  100 (353)
T ss_dssp             --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEeCCEEE
Confidence            457899999999999999999995 57899999987542   234456788899999988 6999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       101 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIL---l~~~g~ikL~DFG~a~~  173 (353)
T 3txo_A          101 FVMEFVNGGDLMFHIQKSRRFDEARARFYAAEIISALMFLHDKGIIYRDLKLDNVL---LDHEGHCKLADFGMCKE  173 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCBC
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEE---ECCCCCEEEccccceee
Confidence            99999999999999987643 555666777888888877      47899999999   88889999999999873

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=99.91  E-value=2.1e-24  Score=155.22  Aligned_cols=140  Identities=16%  Similarity=0.200  Sum_probs=115.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-------   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-------   83 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+... .....+.+.+|+.+++.++||||+++++++.+.+       
T Consensus         5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   84 (332)
T 3qd2_B            5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE   84 (332)
T ss_dssp             HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred             hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence            46799999999999999999995 47899999987643 3345678999999999999999999999985543       


Q ss_pred             --------------------------------------------------cceEEEecCCCCCHHHHHhhcCcchH----
Q 040049           84 --------------------------------------------------VPLLVYEYIPNGNLSDYLHEQNEDFV----  109 (167)
Q Consensus        84 --------------------------------------------------~~~lv~e~~~~g~L~~~i~~~~~~~~----  109 (167)
                                                                        ..+++|||+++++|.+++........    
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  164 (332)
T 3qd2_B           85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHG  164 (332)
T ss_dssp             HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHH
T ss_pred             hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhH
Confidence                                                              27899999999999999997654322    


Q ss_pred             hhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049          110 KDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       110 ~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||.++.
T Consensus       165 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kL~DfG~a~~  213 (332)
T 3qd2_B          165 VCLHIFIQIAEAVEFLHSKGLMHRDLKPSNIF---FTMDDVVKVGDFGLVTA  213 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecCCCcccEE---EeCCCCEEEeecCcccc
Confidence            245667788888877      47899999999   88888999999999873

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.91  E-value=2.6e-24  Score=152.96  Aligned_cols=141  Identities=24%  Similarity=0.255  Sum_probs=120.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+....   ....+.+.+|+..+..++||||+++++++...+..++
T Consensus         9 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l   88 (294)
T 4eqm_A            9 INERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEEDDCYYL   88 (294)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEECSSEEEE
T ss_pred             hhccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeeeCCeEEE
Confidence            346899999999999999999984 578999999874432   2345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++++|.+++..... .....+..+.+++.++.+      +|+|++++||+   +..+..++++|||.++.
T Consensus        89 v~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil---~~~~~~~kl~Dfg~~~~  160 (294)
T 4eqm_A           89 VMEYIEGPTLSEYIESHGPLSVDTAINFTNQILDGIKHAHDMRIVHRDIKPQNIL---IDSNKTLKIFDFGIAKA  160 (294)
T ss_dssp             EEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCCSSSTT
T ss_pred             EEeCCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCCEEEEeCCCccc
Confidence            9999999999999987653 555666777888888877      47899999999   88888999999999874

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.91  E-value=5.5e-24  Score=149.27  Aligned_cols=141  Identities=24%  Similarity=0.377  Sum_probs=121.0

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...++|.+.+.||+|+||.||++...+++.+|+|.+.... ...+.+.+|+.+++.++||||+++++++.+.+..++++|
T Consensus         7 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (269)
T 4hcu_A            7 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFE   85 (269)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             eChhhceeeheecCCCccEEEEEEecCCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEecCCceEEEEE
Confidence            3557899999999999999999998788899999886443 344678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~kl~Dfg~~~~  155 (269)
T 4hcu_A           86 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCL---VGENQVIKVSDFGMTRF  155 (269)
T ss_dssp             CCTTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECGGGCEEECCTTGGGG
T ss_pred             eCCCCcHHHHHHhcCcccCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEE---EcCCCCEEecccccccc
Confidence            9999999999976542  445566667788888877      57899999999   77888999999999874

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=99.91  E-value=1.4e-24  Score=156.06  Aligned_cols=141  Identities=18%  Similarity=0.206  Sum_probs=120.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|..+++.++||||+++++++.+.+.+++
T Consensus         4 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~~~~~~l   83 (318)
T 1fot_A            4 SLQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFM   83 (318)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEE
T ss_pred             ChHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEeCCEEEE
Confidence            357899999999999999999995 57899999987542   22345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+++..... .....+..+.+++.++.+      +|+|++++||+   +..+..++|+|||+++.
T Consensus        84 v~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~g~~kL~Dfg~a~~  155 (318)
T 1fot_A           84 IMDYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENIL---LDKNGHIKITDFGFAKY  155 (318)
T ss_dssp             EECCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ECTTSCEEECCCSSCEE
T ss_pred             EEeCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChheEE---EcCCCCEEEeecCccee
Confidence            9999999999999987543 455566667788888877      46899999999   88889999999999873

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=99.91  E-value=1.3e-24  Score=157.72  Aligned_cols=144  Identities=19%  Similarity=0.185  Sum_probs=119.6

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETE   83 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~   83 (167)
                      .....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+..|..++..+ +||||+++++++.+.+
T Consensus        12 ~~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~~~   91 (345)
T 1xjd_A           12 IKLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKE   91 (345)
T ss_dssp             ----CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSS
T ss_pred             CCCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEeCC
Confidence            445678999999999999999999995 57899999987543   133456778888888876 8999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+|+||||+++|+|.+++..... .....+..+.+++.++.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus        92 ~~~lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~g~vkL~DFG~a~~  167 (345)
T 1xjd_A           92 NLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNIL---LDKDGHIKIADFGMCKE  167 (345)
T ss_dssp             EEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCBC
T ss_pred             EEEEEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEE---ECCCCCEEEeEChhhhh
Confidence            99999999999999999987543 5566667788888888774      6899999999   88888999999999873

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.91  E-value=5.3e-25  Score=161.51  Aligned_cols=143  Identities=20%  Similarity=0.322  Sum_probs=120.3

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ....++|.+.+.||+|+||.||+|... ++..||+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus       110 ~~~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  189 (377)
T 3cbl_A          110 VLNHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYI  189 (377)
T ss_dssp             BCCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             EEchHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecCCCcEE
Confidence            345678999999999999999999964 78999999876442 2334568899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++|+|.+++.....  .....+..+.+++.|+.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       190 v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil---~~~~~~~kl~DfG~s~~  262 (377)
T 3cbl_A          190 VMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCL---VTEKNVLKISDFGMSRE  262 (377)
T ss_dssp             EEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCGGGCEE
T ss_pred             EEEcCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcCCcccCHHHEE---EcCCCcEEECcCCCcee
Confidence            9999999999999986542  444556667788888877      47899999999   78888999999999873

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=99.91  E-value=2.7e-24  Score=156.11  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=119.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|..++..+ +||||+++++++.+.+.+|
T Consensus         7 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   86 (345)
T 3a8x_A            7 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF   86 (345)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             chhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEeCCEEE
Confidence            346899999999999999999995 57899999987643   233455678899999887 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||+++|+|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++
T Consensus        87 lv~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~g~~kL~DFG~a~  158 (345)
T 3a8x_A           87 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL---LDSEGHIKLTDYGMCK  158 (345)
T ss_dssp             EEECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCGGGCB
T ss_pred             EEEeCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEE---ECCCCCEEEEeccccc
Confidence            99999999999999987543 555666677888888877      46899999999   8888999999999987

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=99.91  E-value=1.3e-24  Score=160.22  Aligned_cols=141  Identities=18%  Similarity=0.161  Sum_probs=117.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+..|..++..+ +||||+++++++.+.+.++
T Consensus        50 ~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~~~~~~  129 (396)
T 4dc2_A           50 GLQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQTESRLF  129 (396)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEE
T ss_pred             ChhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEECCEEE
Confidence            346899999999999999999995 57889999987643   222334577888888876 8999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+|++||+   ++.+..++|+|||+++.
T Consensus       130 lV~E~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDLKp~NIL---l~~~g~ikL~DFGla~~  202 (396)
T 4dc2_A          130 FVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEISLALNYLHERGIIYRDLKLDNVL---LDSEGHIKLTDYGMCKE  202 (396)
T ss_dssp             EEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCBC
T ss_pred             EEEEcCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEE---ECCCCCEEEeecceeee
Confidence            99999999999999987543 555666677888888877      47999999999   88889999999999873

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=99.91  E-value=4.2e-24  Score=153.70  Aligned_cols=140  Identities=16%  Similarity=0.178  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+... ......+.+|+.+++.++||||+++++++.+.+..++++|
T Consensus         3 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~-~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   81 (321)
T 1tki_A            3 LYEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFE   81 (321)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             hhhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecC-cccHHHHHHHHHHHHhCCCCCCCeEeEEEecCCEEEEEEE
Confidence            357899999999999999999995 57889999988643 3345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc--cCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK--GLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~--~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+.+....  ......+..+.+++.++.++      |+|++|+||+   +..  +..++++|||.++.
T Consensus        82 ~~~g~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl---~~~~~~~~~kl~Dfg~a~~  153 (321)
T 1tki_A           82 FISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENII---YQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             CCCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSSSCCCEEECCCTTCEE
T ss_pred             eCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEE---EccCCCCCEEEEECCCCeE
Confidence            999999999998654  24556677788888888874      6899999998   665  67899999999873

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=99.91  E-value=3.6e-24  Score=156.77  Aligned_cols=140  Identities=23%  Similarity=0.376  Sum_probs=116.6

Q ss_pred             hhcCCcccceecccCceeEEEEEeC--------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ..++|.+.+.||+|+||.||++...        ++..+|+|.+.... ....+.+.+|+.+++.+ +||||+++++++.+
T Consensus        79 ~~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~  158 (370)
T 2psq_A           79 PRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ  158 (370)
T ss_dssp             CGGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS
T ss_pred             cHHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc
Confidence            3468899999999999999999841        34679999886543 33456789999999999 89999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHHh
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQ  138 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~  138 (167)
                      .+.+++|+||+++|+|.+++.....                 .....+..+.+++.++.+      +|+|+|+.||+   
T Consensus       159 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl---  235 (370)
T 2psq_A          159 DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL---  235 (370)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---
T ss_pred             CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEE---
Confidence            9999999999999999999987531                 233445567788888877      47999999999   


Q ss_pred             hhccCCccccccchhh
Q 040049          139 LLKGLAPKRKKFEEEK  154 (167)
Q Consensus       139 ~~~~~~~~l~df~~~~  154 (167)
                      +..+..++|+|||.++
T Consensus       236 l~~~~~~kl~DFG~a~  251 (370)
T 2psq_A          236 VTENNVMKIADFGLAR  251 (370)
T ss_dssp             ECTTCCEEECCCSSCE
T ss_pred             ECCCCCEEEccccCCc
Confidence            8888999999999987

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=99.91  E-value=4.8e-24  Score=153.58  Aligned_cols=141  Identities=21%  Similarity=0.396  Sum_probs=118.1

Q ss_pred             hhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++...    .+..+|+|.+... .....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus        47 ~~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  126 (325)
T 3kul_A           47 EASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRGRLAM  126 (325)
T ss_dssp             CGGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGGGCCE
T ss_pred             ChhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCccE
Confidence            3467899999999999999999853    3446999988654 3344567899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+++|+|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       127 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~kl~Dfg~a~~  200 (325)
T 3kul_A          127 IVTEYMENGSLDTFLRTHDGQFTIMQLVGMLRGVGAGMRYLSDLGYVHRDLAARNVL---VDSNLVCKVSDFGLSRV  200 (325)
T ss_dssp             EEEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCSSCEE
T ss_pred             EEeeCCCCCcHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEE---ECCCCCEEECCCCcccc
Confidence            9999999999999997653  2445566667788888877      47899999999   78888999999999874

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.91  E-value=3.4e-24  Score=160.65  Aligned_cols=144  Identities=20%  Similarity=0.307  Sum_probs=121.4

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      +++....++|.+.+.||+|+||.||+|...++..+|+|.+... ....+.+.+|+.+++.++||||+++++++. .+..+
T Consensus       181 ~~~~i~~~~~~~~~~lG~G~fg~V~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~iv~l~~~~~-~~~~~  258 (454)
T 1qcf_A          181 DAWEIPRESLKLEKKLGAGQFGEVWMATYNKHTKVAVKTMKPG-SMSVEAFLAEANVMKTLQHDKLVKLHAVVT-KEPIY  258 (454)
T ss_dssp             TCSBCCGGGEEEEEEEECCSSEEEEEEEETTTEEEEEEEECTT-SBCHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCE
T ss_pred             cceeechHHeEEEEEcccCCceEEEEEEECCccEEEEEEecCC-CccHHHHHHHHHHHhhCCCCCEeeEEEEEe-CCccE
Confidence            3344566789999999999999999999877889999998753 345688999999999999999999999985 66789


Q ss_pred             EEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+++|+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       259 lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil---l~~~~~~kl~DFG~a~~  333 (454)
T 1qcf_A          259 IITEFMAKGSLLDFLKSDEGSKQPLPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANIL---VSASLVCKIADFGLARV  333 (454)
T ss_dssp             EEECCCTTCBHHHHHHSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEE---ECTTCCEEECSTTGGGG
T ss_pred             EEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE---ECCCCcEEEeeCCCceE
Confidence            9999999999999998542   2344555667788888877      57999999999   88888999999999984

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=99.91  E-value=1.6e-24  Score=159.20  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=121.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..++
T Consensus        13 ~~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~l   92 (384)
T 4fr4_A           13 NFDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQDEEDMFM   92 (384)
T ss_dssp             CGGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            457899999999999999999984 57889999987532   23455778899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++|+|.+++..... .....+..+.+++.|+.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus        93 v~e~~~gg~L~~~l~~~~~l~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl---l~~~g~vkL~DFG~a~~  164 (384)
T 4fr4_A           93 VVDLLLGGDLRYHLQQNVHFKEETVKLFICELVMALDYLQNQRIIHRDMKPDNIL---LDEHGHVHITDFNIAAM  164 (384)
T ss_dssp             EECCCTTEEHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeE---ECCCCCEEEeccceeee
Confidence            9999999999999987643 555666677888888887      46899999999   88889999999999873

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=99.91  E-value=2.6e-24  Score=156.42  Aligned_cols=140  Identities=17%  Similarity=0.122  Sum_probs=120.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+.+|+|
T Consensus        40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv  119 (350)
T 1rdq_E           40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMV  119 (350)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEcCCEEEEE
Confidence            46899999999999999999995 57899999987542   234557788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||+++|+|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       120 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~g~~kL~DFg~a~~  190 (350)
T 1rdq_E          120 MEYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLL---IDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             EECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EcCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCccceEE---ECCCCCEEEccccccee
Confidence            999999999999987543 555666777888888877      46899999999   88888999999999873

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=99.91  E-value=3.6e-24  Score=153.25  Aligned_cols=145  Identities=23%  Similarity=0.343  Sum_probs=115.9

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      .++....++|.+.+.||+|+||.||++.. ++..+|+|.+....  ....+.+.+|+.+++.++||||+++++++...+.
T Consensus        30 ~~~~i~~~~y~i~~~lG~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~  108 (309)
T 3p86_A           30 DDMDIPWCDLNIKEKIGAGSFGTVHRAEW-HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQPPN  108 (309)
T ss_dssp             --CBCCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSTTC
T ss_pred             ccccCChhHceeeeEeecCCCeEEEEEEE-CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCc
Confidence            34445567899999999999999999986 68889999876543  3344678899999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc----chHhhHHHHHHHHcCch--------hhhhcccchhHHHHhhhccCCccccccch
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE----DFVKDVGFILSRRGGIP--------RLKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~--------~~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      .++|+||+++|+|.+++.....    .....+..+.+++.++.        .+|+|+|+.||+   +..+..++|+|||.
T Consensus       109 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIl---l~~~~~~kL~Dfg~  185 (309)
T 3p86_A          109 LSIVTEYLSRGSLYRLLHKSGAREQLDERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLL---VDKKYTVKVCDFGL  185 (309)
T ss_dssp             CEEEEECCTTCBHHHHHHSTTHHHHSCHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEE---ECTTCCEEECCCC-
T ss_pred             eEEEEecCCCCcHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEE---EeCCCcEEECCCCC
Confidence            9999999999999999987542    33344455667766665        467899999999   88888999999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       186 a~~  188 (309)
T 3p86_A          186 SRL  188 (309)
T ss_dssp             ---
T ss_pred             Ccc
Confidence            874

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.91  E-value=4.2e-24  Score=156.57  Aligned_cols=140  Identities=24%  Similarity=0.425  Sum_probs=113.8

Q ss_pred             hcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|.+.+.||+|+||.||+|...    ++..+|+|.+... .....+.+.+|+.++..++||||+++++++...+..++
T Consensus        44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~l  123 (373)
T 2qol_A           44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTKSKPVMI  123 (373)
T ss_dssp             GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCceEE
Confidence            357899999999999999999843    4678999988654 33445678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       124 v~e~~~~~sL~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kl~Dfg~a~~  196 (373)
T 2qol_A          124 VTEYMENGSLDSFLRKHDAQFTVIQLVGMLRGIASGMKYLSDMGYVHRDLAARNIL---INSNLVCKVSDFGLGRV  196 (373)
T ss_dssp             EEECCTTCBHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCC-----
T ss_pred             EEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCcceEE---EcCCCCEEECcCccccc
Confidence            9999999999999986542  444556667788888877      47899999999   78888999999999874

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=99.91  E-value=7e-24  Score=152.78  Aligned_cols=141  Identities=23%  Similarity=0.201  Sum_probs=118.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+.....      ...+.+.+|+.+++.++||||+++++++.+.+.
T Consensus         9 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~   88 (326)
T 2y0a_A            9 VDDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTD   88 (326)
T ss_dssp             HHHHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             cccceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCE
Confidence            346799999999999999999995 5789999998754322      246788999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC----Cccccccchh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL----APKRKKFEEE  153 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~----~~~l~df~~~  153 (167)
                      .++|+||+++++|.+++..... .....+..+.+++.++.++      |+|++++||+   +..+.    .++|+|||.+
T Consensus        89 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl---l~~~~~~~~~~kl~Dfg~a  165 (326)
T 2y0a_A           89 VILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIM---LLDRNVPKPRIKIIDFGLA  165 (326)
T ss_dssp             EEEEEECCCSCBHHHHHTTSSCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESCSSSSSCCEEECCCTTC
T ss_pred             EEEEEEcCCCCCHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEE---EecCCCCCCCEEEEECCCC
Confidence            9999999999999999986543 5556677788888888874      6899999998   66555    7899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       166 ~~  167 (326)
T 2y0a_A          166 HK  167 (326)
T ss_dssp             EE
T ss_pred             eE
Confidence            73

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.90  E-value=6.8e-24  Score=149.74  Aligned_cols=143  Identities=22%  Similarity=0.279  Sum_probs=119.1

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +....++|.+.+.||+|+||.||++...++..+|+|.+.... ...+.+.+|+.++..++||||+++++++.+.+..++|
T Consensus        19 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv   97 (283)
T 3gen_A           19 WEIDPKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFII   97 (283)
T ss_dssp             TBCCGGGEEEEEECC---CEEEEEEEETTTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEEEE
T ss_pred             ccCCHHHHHhHhhcCCCCCceEEEEEEcCCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEecCCCeEEE
Confidence            344567899999999999999999998788899999887443 3446789999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil---i~~~~~~kl~Dfg~~~~  169 (283)
T 3gen_A           98 TEYMANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCL---VNDQGVVKVSDFGLSRY  169 (283)
T ss_dssp             ECCCTTCBHHHHHHCGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEE---ECTTSCEEECSTTGGGG
T ss_pred             EeccCCCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCccceEE---EcCCCCEEEcccccccc
Confidence            99999999999998633  3455666677788888877      47899999999   78888999999999874

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=99.90  E-value=6.6e-24  Score=154.92  Aligned_cols=139  Identities=17%  Similarity=0.152  Sum_probs=117.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+..... ..+.+.+|+..++.++||||+++++++.+.+..++|+|
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~e   96 (361)
T 3uc3_A           18 DSDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGAA-IDENVQREIINHRSLRHPNIVRFKEVILTPTHLAIIME   96 (361)
T ss_dssp             CTTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESSTT-SCHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCcc-ccHHHHHHHHHHHhCCCCCCCcEEEEEeeCCEEEEEEE
Confidence            457899999999999999999995 4789999998864332 33668899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC--ccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA--PKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~--~~l~df~~~~  154 (167)
                      |+++|+|.+++..... .....+..+.+++.++.+      +|+|+|+.||+   +.....  ++|+|||.++
T Consensus        97 ~~~~~~L~~~l~~~~~~~~~~~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nil---l~~~~~~~~kl~Dfg~a~  166 (361)
T 3uc3_A           97 YASGGELYERICNAGRFSEDEARFFFQQLLSGVSYCHSMQICHRDLKLENTL---LDGSPAPRLKICDFGYSK  166 (361)
T ss_dssp             CCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCSCCCCGGGEE---ECSSSSCCEEECCCCCC-
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---EcCCCCceEEEeecCccc
Confidence            9999999999976543 556667778888888877      47899999998   665554  8999999887

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.90  E-value=9.9e-24  Score=147.82  Aligned_cols=140  Identities=23%  Similarity=0.304  Sum_probs=121.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...++|.+.+.||+|+||.||++...++..+|+|.+.... ...+.+.+|+.++..++||||+++++++...+..++|+|
T Consensus         5 l~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (268)
T 3sxs_A            5 LKREEITLLKELGSGQFGVVKLGKWKGQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSKEYPIYIVTE   83 (268)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSEEEEEE
T ss_pred             echhheeeeeeeccCCCceEEEEEecCceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEccCCceEEEEE
Confidence            3567899999999999999999998788889999886443 344678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+.
T Consensus        84 ~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~~l~Dfg~~~  152 (268)
T 3sxs_A           84 YISNGCLLNYLRSHGKGLEPSQLLEMCYDVCEGMAFLESHQFIHRDLAARNCL---VDRDLCVKVSDFGMTR  152 (268)
T ss_dssp             CCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEE---ECTTCCEEECCTTCEE
T ss_pred             ccCCCcHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCcCcceEE---ECCCCCEEEccCccce
Confidence            9999999999987542  455666777888888877      47899999999   8888899999999886

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=99.90  E-value=4.7e-24  Score=153.76  Aligned_cols=141  Identities=20%  Similarity=0.154  Sum_probs=113.2

Q ss_pred             hhhcCCcccceecccCceeEEEEEe----CCCcEEEEEeccCCC----cccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVVG----KGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ...++|.+.+.||+|+||.||++..    .+++.+|+|.+....    ......+.+|+.+++.++||||+++++++...
T Consensus        14 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~   93 (327)
T 3a62_A           14 IRPECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQTG   93 (327)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEECS
T ss_pred             CCHHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEcC
Confidence            3457899999999999999999985    468999999876532    23445678899999999999999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +..++|+||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++
T Consensus        94 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nil---l~~~~~~kl~Dfg~~~  169 (327)
T 3a62_A           94 GKLYLILEYLSGGELFMQLEREGIFMEDTACFYLAEISMALGHLHQKGIIYRDLKPENIM---LNHQGHVKLTDFGLCK  169 (327)
T ss_dssp             SCEEEEEECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEE---ECTTSCEEECCCSCC-
T ss_pred             CEEEEEEeCCCCCcHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeE---ECCCCcEEEEeCCccc
Confidence            999999999999999999986543 445566667788888877      57899999999   7888899999999987

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=99.90  E-value=6.8e-24  Score=156.13  Aligned_cols=140  Identities=18%  Similarity=0.215  Sum_probs=119.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+..........+.+|+.++..++||||+++++++.+.+..++|+||
T Consensus        50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv~E~  129 (387)
T 1kob_A           50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  129 (387)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEeCCEEEEEEEc
Confidence            46799999999999999999985 57899999988765555566789999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhh--ccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLL--KGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~--~~~~~~l~df~~~~~  155 (167)
                      +++|+|.+.+....  ......+..+.+++.++.++      |+|++++||+   +.  ....++|+|||.++.
T Consensus       130 ~~gg~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIl---l~~~~~~~vkL~DFG~a~~  200 (387)
T 1kob_A          130 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM---CETKKASSVKIIDFGLATK  200 (387)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSTTCCCEEECCCTTCEE
T ss_pred             CCCCcHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccchHHeE---EecCCCCceEEEeccccee
Confidence            99999999988653  24556667788888888874      6899999998   54  346789999999874

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.90  E-value=4.2e-24  Score=151.70  Aligned_cols=141  Identities=28%  Similarity=0.406  Sum_probs=119.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Cc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET--EV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~   84 (167)
                      ..++|.+.+.||+|+||.||++..     .+++.+|+|.+........+.+.+|+.+++.++||||+++++++...  ..
T Consensus         8 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~   87 (295)
T 3ugc_A            8 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN   87 (295)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHHHHTS
T ss_pred             CHHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecCCCCc
Confidence            567899999999999999999973     36889999998766666667899999999999999999999998553  56


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++|+||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        88 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil---~~~~~~~kl~Dfg~~~~  163 (295)
T 3ugc_A           88 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNIL---VENENRVKIGDFGLTKV  163 (295)
T ss_dssp             CEEEEECCTTCBHHHHHHHCGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECCCCSCC-
T ss_pred             eEEEEEeCCCCCHHHHHHhcccccCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEE---EcCCCeEEEccCccccc
Confidence            8999999999999999987542  444556667788888877      57899999999   88888999999999874

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.90  E-value=8.8e-24  Score=149.50  Aligned_cols=140  Identities=18%  Similarity=0.253  Sum_probs=118.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCC-------cEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADE-------RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~-------~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||++.. .++       ..+++|.+........+.+.+|+.+++.++||||+++++++.+.+
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~   85 (289)
T 4fvq_A            6 RNEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCGD   85 (289)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCTT
T ss_pred             chhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeCC
Confidence            457899999999999999999984 334       469999887666667788999999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC--------ccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA--------PKR  147 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~--------~~l  147 (167)
                      ..++|+||+++|+|.+++.....  .....+..+.+++.++.+      +|+|++++||+   +..+..        +++
T Consensus        86 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~~~~~~kl  162 (289)
T 4fvq_A           86 ENILVQEFVKFGSLDTYLKKNKNCINILWKLEVAKQLAAAMHFLEENTLIHGNVCAKNIL---LIREEDRKTGNPPFIKL  162 (289)
T ss_dssp             CCEEEEECCTTCBHHHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---EEECCBGGGTBCCEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHhhCCeECCCcCcceEE---EecCCcccccccceeee
Confidence            99999999999999999987653  444555667788888877      47999999999   666655        899


Q ss_pred             cccchhh
Q 040049          148 KKFEEEK  154 (167)
Q Consensus       148 ~df~~~~  154 (167)
                      +|||.+.
T Consensus       163 ~Dfg~~~  169 (289)
T 4fvq_A          163 SDPGISI  169 (289)
T ss_dssp             CCCCSCT
T ss_pred             ccCcccc
Confidence            9999886

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=99.90  E-value=2.7e-24  Score=154.83  Aligned_cols=139  Identities=22%  Similarity=0.253  Sum_probs=117.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+..... ...+.+.+|+.+++.++||||+++++++.+.+..++|+|
T Consensus         6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~e   85 (323)
T 3tki_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (323)
T ss_dssp             TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEEEEE
Confidence            46899999999999999999985 4789999998754332 233567899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++|+|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl---l~~~~~~kl~Dfg~a~  153 (323)
T 3tki_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL---LDERDNLKISDFGLAT  153 (323)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTTCE
T ss_pred             cCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccccchHHEE---EeCCCCEEEEEeeccc
Confidence            9999999999886543 555667778888888887      47899999999   8888899999999986

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=99.90  E-value=4e-24  Score=155.65  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+..|..++..+ +||+|+++++++.+.+.+|
T Consensus        18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~~~~~~   97 (353)
T 2i0e_A           18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY   97 (353)
T ss_dssp             -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEECSSEEE
T ss_pred             chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEcCCEEE
Confidence            457899999999999999999995 46889999987543   234556788999999887 7999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||++||+|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++
T Consensus        98 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl---l~~~g~vkL~DFG~a~  169 (353)
T 2i0e_A           98 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVM---LDSEGHIKIADFGMCK  169 (353)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCB
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEE---EcCCCcEEEEeCCccc
Confidence            99999999999999987543 556666778888888877      47899999999   8888999999999987

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=99.90  E-value=3.8e-24  Score=155.66  Aligned_cols=148  Identities=26%  Similarity=0.346  Sum_probs=120.8

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeee
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKL   75 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l   75 (167)
                      +...++....++|.+.+.||+|+||.||++.+      .+++.+|+|.+.... ....+.+.+|+.++..+ +||||+++
T Consensus        12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~   91 (359)
T 3vhe_A           12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   91 (359)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence            45566777889999999999999999999972      245789999986543 33456789999999999 78999999


Q ss_pred             eeeeecCC-cceEEEecCCCCCHHHHHhhcC-------------------------------------------------
Q 040049           76 LGCCLETE-VPLLVYEYIPNGNLSDYLHEQN-------------------------------------------------  105 (167)
Q Consensus        76 ~~~~~~~~-~~~lv~e~~~~g~L~~~i~~~~-------------------------------------------------  105 (167)
                      ++++...+ ..++++||+++|+|.+++....                                                 
T Consensus        92 ~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (359)
T 3vhe_A           92 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEK  171 (359)
T ss_dssp             EEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSCC------------------------------------------
T ss_pred             eeeeecCCCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccccccc
Confidence            99998765 4899999999999999998653                                                 


Q ss_pred             ------------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049          106 ------------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       106 ------------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                                        ......+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||.++
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~~ivH~Dikp~NIl---l~~~~~~kl~Dfg~a~  241 (359)
T 3vhe_A          172 SLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNIL---LSEKNVVKICDFGLAR  241 (359)
T ss_dssp             ------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCEEECCCGGGS
T ss_pred             ccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHCCcccCCCChhhEE---EcCCCcEEEEecccee
Confidence                              1223344556778888877      57899999999   7888899999999987

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.90  E-value=9.5e-24  Score=152.63  Aligned_cols=144  Identities=19%  Similarity=0.328  Sum_probs=119.7

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      +....++|.+.+.||+|+||.||++...      +++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++..
T Consensus        42 ~~~~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~  121 (343)
T 1luf_A           42 LEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV  121 (343)
T ss_dssp             TBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS
T ss_pred             eEecHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc
Confidence            3445689999999999999999999853      34789999886543 3345678999999999999999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcC-------------------------cchHhhHHHHHHHHcCchh------hhhccc
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQN-------------------------EDFVKDVGFILSRRGGIPR------LKRKKK  130 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~-------------------------~~~~~~~~~~~~i~~~l~~------~h~~~~  130 (167)
                      .+..++|+||+++|+|.+++....                         ......+..+.+++.++.+      +|+|++
T Consensus       122 ~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlk  201 (343)
T 1luf_A          122 GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA  201 (343)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCS
T ss_pred             CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCC
Confidence            999999999999999999998742                         2334455567778888877      478999


Q ss_pred             chhHHHHhhhccCCccccccchhhh
Q 040049          131 KNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       131 ~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +.||+   +..+..++|+|||.++.
T Consensus       202 p~NIl---~~~~~~~kl~Dfg~~~~  223 (343)
T 1luf_A          202 TRNCL---VGENMVVKIADFGLSRN  223 (343)
T ss_dssp             GGGEE---ECGGGCEEECCCSCHHH
T ss_pred             cceEE---ECCCCeEEEeecCCCcc
Confidence            99999   78888999999999874

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=99.90  E-value=4.6e-24  Score=159.49  Aligned_cols=141  Identities=16%  Similarity=0.169  Sum_probs=117.6

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .-.++|.+.+.||+|+||.||+|.. .+++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus         8 ~~~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~l   87 (444)
T 3soa_A            8 RFTEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISEEGHHYL   87 (444)
T ss_dssp             HHHHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEECSSEEEE
T ss_pred             cccCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEECCEEEE
Confidence            3467899999999999999999984 578999999876543  2345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh---ccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL---KGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~---~~~~~~l~df~~~~  154 (167)
                      |+||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+||+||+   +.   ++..++|+|||++.
T Consensus        88 v~E~~~gg~L~~~i~~~~~~~e~~~~~i~~qil~aL~~lH~~givHrDlKp~NIl---l~~~~~~~~vkL~DFG~a~  161 (444)
T 3soa_A           88 IFDLVTGGELFEDIVAREYYSEADASHCIQQILEAVLHCHQMGVVHRNLKPENLL---LASKLKGAAVKLADFGLAI  161 (444)
T ss_dssp             EECCCBCCBHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEE---ESBSSTTCCEEECCCSSCB
T ss_pred             EEEeCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEE---EeccCCCCcEEEccCceeE
Confidence            9999999999999987654 455666677888888877      47999999999   55   45678999999986

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=99.90  E-value=7.9e-24  Score=154.57  Aligned_cols=141  Identities=18%  Similarity=0.201  Sum_probs=118.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~lv  106 (362)
T 2bdw_A           27 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV  106 (362)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             cccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEE
Confidence            346799999999999999999985 578999999886542  33456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc---cCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK---GLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~---~~~~~l~df~~~~~  155 (167)
                      +||+++|+|.+.+..... .....+..+.+++.++.+      +|+|++++||+   +..   +..++|+|||++..
T Consensus       107 ~e~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIl---l~~~~~~~~~kl~DfG~a~~  180 (362)
T 2bdw_A          107 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLL---LASKAKGAAVKLADFGLAIE  180 (362)
T ss_dssp             ECCCCSCBHHHHHTTCSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE---ESCSSTTCCEEECCCTTCBC
T ss_pred             EecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEE---EecCCCCCCEEEeecCcceE
Confidence            999999999999886643 455666777888888877      47899999999   543   34689999999863

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=99.90  E-value=9.3e-24  Score=148.62  Aligned_cols=142  Identities=15%  Similarity=0.154  Sum_probs=121.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ...++|.+.+.||+|+||.||++.. .++..+++|.+........+.+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (277)
T 3f3z_A            6 DINQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFEDNTDIYLVM   85 (277)
T ss_dssp             CHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEecCCeEEEEE
Confidence            3567899999999999999999995 467889999887665666788999999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhh---hccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL---LKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~---~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +   ..+..++++|||.+..
T Consensus        86 e~~~~~~L~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~~~~l~Dfg~~~~  158 (277)
T 3f3z_A           86 ELCTGGELFERVVHKRVFRESDAARIMKDVLSAVAYCHKLNVAHRDLKPENFL---FLTDSPDSPLKLIDFGLAAR  158 (277)
T ss_dssp             ECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESSSSTTCCEEECCCTTCEE
T ss_pred             eccCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEE---EecCCCCCcEEEEeccccee
Confidence            99999999998887653 555666777888888877      46899999999   6   5677899999998863

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.90  E-value=3.5e-24  Score=162.14  Aligned_cols=143  Identities=23%  Similarity=0.326  Sum_probs=120.9

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC-CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA-DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      +....++|.+.+.||+|+||.||+|.+. ++..||+|.+... ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus       215 ~~~~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~~~~~l  293 (495)
T 1opk_A          215 WEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPPFYI  293 (495)
T ss_dssp             CBCCGGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEE
T ss_pred             cccCHHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCc-ccchHHHHHHHHHHHhcCCCCEeeEEEEEecCCcEEE
Confidence            3345677889999999999999999954 5889999998644 3356789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+++.....   .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       294 v~E~~~~g~L~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl---l~~~~~~kl~DFG~a~~  367 (495)
T 1opk_A          294 ITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRNLAARNCL---VGENHLVKVADFGLSRL  367 (495)
T ss_dssp             EEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECGGGCEEECCTTCEEC
T ss_pred             EEEccCCCCHHHHHHhcCcCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEE---ECCCCcEEEeeccccee
Confidence            9999999999999986432   344455567788888877      57999999999   78888999999999874

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.90  E-value=4.4e-23  Score=147.14  Aligned_cols=150  Identities=27%  Similarity=0.395  Sum_probs=125.6

Q ss_pred             ccccHHHHHhhhcCCccc------ceecccCceeEEEEEeCCCcEEEEEeccCC----CcccHHHHHHHHHHHhcCCCCc
Q 040049            2 QIFSAKELDKATDHLNVN------IVLGQGGQGTVHKGMLADERIVAVKKSKVV----GKGKLDEFINKVVILSQINYRN   71 (167)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~------~~ig~g~~g~v~~~~~~~~~~~avk~~~~~----~~~~~~~~~~e~~~~~~l~h~~   71 (167)
                      +.|+++++...+++|...      +.||+|+||.||++.. ++..+|+|.+...    .....+.+.+|+.+++.++|||
T Consensus        13 ~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~   91 (307)
T 2nru_A           13 HSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV-NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQHEN   91 (307)
T ss_dssp             EECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES-SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCCTT
T ss_pred             CcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE-CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCCCC
Confidence            468899999999988776      8899999999999986 6788999987543    2334577899999999999999


Q ss_pred             eeeeeeeeecCCcceEEEecCCCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc
Q 040049           72 VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK  141 (167)
Q Consensus        72 i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~  141 (167)
                      |+++++++...+..++++||+++++|.+++....    ......+..+.+++.++.+      +|+|+++.||+   +..
T Consensus        92 i~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil---i~~  168 (307)
T 2nru_A           92 LVELLGFSSDGDDLCLVYVYMPNGSLLDRLSCLDGTPPLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANIL---LDE  168 (307)
T ss_dssp             BCCEEEEECSSSSCEEEEECCTTCBHHHHHHTGGGCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ECT
T ss_pred             eEEEEEEEecCCceEEEEEecCCCcHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEE---EcC
Confidence            9999999999999999999999999999997543    2344455567778888877      47899999999   788


Q ss_pred             cCCccccccchhhh
Q 040049          142 GLAPKRKKFEEEKW  155 (167)
Q Consensus       142 ~~~~~l~df~~~~~  155 (167)
                      +..++++|||.++.
T Consensus       169 ~~~~kl~Dfg~~~~  182 (307)
T 2nru_A          169 AFTAKISDFGLARA  182 (307)
T ss_dssp             TCCEEECCCTTCEE
T ss_pred             CCcEEEeecccccc
Confidence            88999999998763

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.90  E-value=7.8e-24  Score=158.59  Aligned_cols=138  Identities=24%  Similarity=0.311  Sum_probs=117.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-cceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-VPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-~~~lv~   89 (167)
                      ...++|.+.+.||+|+||.||++.. .++.+|+|.++...  ..+.+.+|+.+++.++||||+++++++...+ ..++|+
T Consensus       190 i~~~~~~~~~~lG~G~fg~V~~~~~-~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~iv~  266 (450)
T 1k9a_A          190 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT  266 (450)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEE-TTEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECTTSCEEEEE
T ss_pred             cChHHeEEEeeecCcCCeeEEEEEe-cCCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcCCCceEEEE
Confidence            4567899999999999999999986 47799999987543  4578899999999999999999999987665 789999


Q ss_pred             ecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           90 EYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ||+++|+|.+++.....   .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++
T Consensus       267 e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil---l~~~~~~kl~DfG~a~  337 (450)
T 1k9a_A          267 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVL---VSEDNVAKVSDFGLTK  337 (450)
T ss_dssp             ECCTTCBHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ECTTSCEEECCCTTCE
T ss_pred             EecCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEE---ECCCCCEEEeeCCCcc
Confidence            99999999999987643   334456667888888877      47999999999   8888899999999987

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=99.90  E-value=1e-23  Score=153.35  Aligned_cols=140  Identities=15%  Similarity=0.157  Sum_probs=115.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-----CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-----GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-----~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+...     .....+.+.+|+.+++.++||||+++++++.+.+..+
T Consensus        23 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~  102 (351)
T 3c0i_A           23 EDVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSDGMLY  102 (351)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEE
T ss_pred             ccceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEE
Confidence            46799999999999999999985 57899999987432     2234678899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc---CCccccccch
Q 040049           87 LVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG---LAPKRKKFEE  152 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~---~~~~l~df~~  152 (167)
                      +||||+++++|.+.+....     ......+..+.+++.++.+      +|+|+|++||+   +...   ..++++|||.
T Consensus       103 lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl---~~~~~~~~~vkl~Dfg~  179 (351)
T 3c0i_A          103 MVFEFMDGADLCFEIVKRADAGFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVL---LASKENSAPVKLGGFGV  179 (351)
T ss_dssp             EEEECCSSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECSSSTTCCEEECCCTT
T ss_pred             EEEeCCCCCCHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeE---EecCCCCCcEEEecCcc
Confidence            9999999999998887542     2444566677888888887      47899999999   6543   3489999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       180 a~~  182 (351)
T 3c0i_A          180 AIQ  182 (351)
T ss_dssp             CEE
T ss_pred             eeE
Confidence            863

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=99.90  E-value=1.4e-23  Score=150.36  Aligned_cols=141  Identities=20%  Similarity=0.267  Sum_probs=117.7

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ...++|.+.+.||+|+||.||++...+++.+|+|.+...  .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        18 ~l~~~y~~~~~lG~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv   97 (311)
T 3niz_A           18 GLMEKYQKLEKVGEGTYGVVYKAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHSERCLTLV   97 (311)
T ss_dssp             CSSCEEEEEEEEEECSSCEEEEEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECCSSCEEEE
T ss_pred             chHhhhHhhhhccCCCCeEEEEEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEccCCEEEEE
Confidence            345789999999999999999999878999999987643  233356788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++ +|.+.+.....  .....+..+.+++.++.++      |+|+|++||+   +..+..++|+|||.++.
T Consensus        98 ~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl---~~~~~~~kl~Dfg~a~~  168 (311)
T 3niz_A           98 FEFMEK-DLKKVLDENKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLL---INSDGALKLADFGLARA  168 (311)
T ss_dssp             EECCSE-EHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EcCCCC-CHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEE---ECCCCCEEEccCcCcee
Confidence            999986 88888876543  4455566678888888874      6899999999   88888999999999874

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=99.90  E-value=4.3e-24  Score=151.90  Aligned_cols=142  Identities=18%  Similarity=0.198  Sum_probs=114.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--------------------------ccHHHHHHHHHH
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--------------------------GKLDEFINKVVI   63 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--------------------------~~~~~~~~e~~~   63 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+.....                          ...+.+.+|+.+
T Consensus        10 ~~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~   89 (298)
T 2zv2_A           10 VQLNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAI   89 (298)
T ss_dssp             CEETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHH
T ss_pred             eeecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHH
Confidence            3457899999999999999999985 5789999998754321                          123468899999


Q ss_pred             HhcCCCCceeeeeeeeec--CCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHH
Q 040049           64 LSQINYRNVVKLLGCCLE--TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIW  135 (167)
Q Consensus        64 ~~~l~h~~i~~l~~~~~~--~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~  135 (167)
                      ++.++||||+++++++.+  .+..++||||+++++|.+++..........+..+.+++.++.++      |+|++++||+
T Consensus        90 l~~l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil  169 (298)
T 2zv2_A           90 LKKLDHPNVVKLVEVLDDPNEDHLYMVFELVNQGPVMEVPTLKPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLL  169 (298)
T ss_dssp             HHTCCCTTBCCEEEEEECSSSSEEEEEEECCTTCBSCCSSCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE
T ss_pred             HHhCCCCCCCeEEEEEEcCCCCEEEEEEecCCCCcHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE
Confidence            999999999999999986  46789999999999998876554445566677788888888774      6899999999


Q ss_pred             HHhhhccCCccccccchhhh
Q 040049          136 KQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~~  155 (167)
                         +..+..++|+|||.++.
T Consensus       170 ---~~~~~~~kl~Dfg~~~~  186 (298)
T 2zv2_A          170 ---VGEDGHIKIADFGVSNE  186 (298)
T ss_dssp             ---ECTTSCEEECCCTTCEE
T ss_pred             ---ECCCCCEEEecCCCccc
Confidence               78888999999999863

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.90  E-value=7.8e-24  Score=151.31  Aligned_cols=145  Identities=26%  Similarity=0.375  Sum_probs=119.9

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCC   79 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~   79 (167)
                      .++....++|.+.+.||+|+||.||++..      .++..+|+|.+... .....+.+.+|+.+++.++||||+++++++
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~   95 (314)
T 2ivs_A           16 PKWEFPRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGAC   95 (314)
T ss_dssp             TTTBCCGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE
T ss_pred             cccccchhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEE
Confidence            33445568899999999999999999984      23478999988654 334456789999999999999999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-------------------------chHhhHHHHHHHHcCchh------hhhc
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-------------------------DFVKDVGFILSRRGGIPR------LKRK  128 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-------------------------~~~~~~~~~~~i~~~l~~------~h~~  128 (167)
                      ...+..++++||+++++|.+++.....                         .....+..+.+++.++.+      +|+|
T Consensus        96 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~d  175 (314)
T 2ivs_A           96 SQDGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRD  175 (314)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCC
T ss_pred             ecCCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccc
Confidence            999999999999999999999986431                         333455667788888877      4789


Q ss_pred             ccchhHHHHhhhccCCccccccchhh
Q 040049          129 KKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++.||+   +..+..++|+|||.++
T Consensus       176 ikp~NIl---i~~~~~~kl~Dfg~~~  198 (314)
T 2ivs_A          176 LAARNIL---VAEGRKMKISDFGLSR  198 (314)
T ss_dssp             CSGGGEE---EETTTEEEECCCTTCE
T ss_pred             cchheEE---EcCCCCEEEccccccc
Confidence            9999999   7888889999999986

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=153.66  Aligned_cols=140  Identities=21%  Similarity=0.315  Sum_probs=115.1

Q ss_pred             hcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||+|...      ++..||+|.+... .......+.+|+.+++.++||||+++++++.+.+..
T Consensus        70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~  149 (367)
T 3l9p_A           70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLPR  149 (367)
T ss_dssp             GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSC
T ss_pred             HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEecCCCC
Confidence            467899999999999999999832      4678999988644 334455788999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcC--------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh---ccCCcccc
Q 040049           86 LLVYEYIPNGNLSDYLHEQN--------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL---KGLAPKRK  148 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~--------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~---~~~~~~l~  148 (167)
                      ++|+||+++|+|.+++....        ......+..+.+++.++.+      +|+|+|++||+   +.   .+..++|+
T Consensus       150 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~~~~~~~kL~  226 (367)
T 3l9p_A          150 FILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCL---LTCPGPGRVAKIG  226 (367)
T ss_dssp             EEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ESCSSTTCCEEEC
T ss_pred             EEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEE---EecCCCCceEEEC
Confidence            99999999999999998754        2333455667788888877      57999999999   66   34458999


Q ss_pred             ccchhhh
Q 040049          149 KFEEEKW  155 (167)
Q Consensus       149 df~~~~~  155 (167)
                      |||.++.
T Consensus       227 DFG~a~~  233 (367)
T 3l9p_A          227 DFGMARD  233 (367)
T ss_dssp             CCHHHHH
T ss_pred             CCccccc
Confidence            9999973

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=99.90  E-value=1.3e-23  Score=150.73  Aligned_cols=141  Identities=22%  Similarity=0.267  Sum_probs=116.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC--cceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETE--VPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~--~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+  ..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (319)
T 4euu_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL   86 (319)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred             CCCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecCCCceEEE
Confidence            356899999999999999999995 468999999876432 344677889999999999999999999987665  6799


Q ss_pred             EEecCCCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh----hccCCccccccchh
Q 040049           88 VYEYIPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL----LKGLAPKRKKFEEE  153 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~----~~~~~~~l~df~~~  153 (167)
                      ||||+++++|.+++....    ......+..+.+++.++.+      +|+|+|+.||+   +    .....++|+|||.+
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~~kL~Dfg~a  163 (319)
T 4euu_A           87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIM---RVIGEDGQSVYKLTDFGAA  163 (319)
T ss_dssp             EEECCTTCBHHHHHHSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEECTTSCEEEEECCCTTC
T ss_pred             EEeCCCCCCHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE---EeccCCCCceEEEccCCCc
Confidence            999999999999998754    2445556667788888877      47899999998   5    55567899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       164 ~~  165 (319)
T 4euu_A          164 RE  165 (319)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=99.90  E-value=1.5e-23  Score=154.01  Aligned_cols=141  Identities=23%  Similarity=0.332  Sum_probs=117.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-C-------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-A-------DERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~-------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      ...++|.+.+.||+|+||.||+|.. .       .+..+|+|.+... .......+.+|+.+++.+ +||||+++++++.
T Consensus        66 i~~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~  145 (382)
T 3tt0_A           66 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT  145 (382)
T ss_dssp             CCGGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cchhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeec
Confidence            3457899999999999999999984 2       2357999987654 334456789999999999 8999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      +.+..++|+||+++|+|.+++....                 ......+..+.+++.++.+      +|+|+|++||+  
T Consensus       146 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl--  223 (382)
T 3tt0_A          146 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL--  223 (382)
T ss_dssp             SSSSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE--
T ss_pred             cCCceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEE--
Confidence            9999999999999999999998754                 2344556667788888877      57999999999  


Q ss_pred             hhhccCCccccccchhh
Q 040049          138 QLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~  154 (167)
                       +..+..++|+|||.++
T Consensus       224 -l~~~~~~kL~DFG~a~  239 (382)
T 3tt0_A          224 -VTEDNVMKIADFGLAR  239 (382)
T ss_dssp             -ECTTCCEEECSCSCCC
T ss_pred             -EcCCCcEEEcccCccc
Confidence             8888999999999987

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=99.90  E-value=6.6e-24  Score=159.76  Aligned_cols=141  Identities=20%  Similarity=0.231  Sum_probs=120.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||+|.. .+|+.+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..++
T Consensus        14 ~~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~~~~~l   93 (476)
T 2y94_A           14 KIGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTPSDIFM   93 (476)
T ss_dssp             EETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             eecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEE
Confidence            457899999999999999999995 47999999987543   12345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++|+|.+++..... .....+..+.+++.++.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus        94 v~E~~~gg~L~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIl---l~~~~~vkL~DFG~a~~  165 (476)
T 2y94_A           94 VMEYVSGGELFDYICKNGRLDEKESRRLFQQILSGVDYCHRHMVVHRDLKPENVL---LDAHMNAKIADFGLSNM  165 (476)
T ss_dssp             EEECCSSEEHHHHTTSSSSCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEE---ECTTCCEEECCCSSCEE
T ss_pred             EEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcccccHHHEE---EecCCCeEEEeccchhh
Confidence            9999999999999986543 5556667788888888774      6899999999   88888999999999874

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=99.90  E-value=1.4e-23  Score=154.43  Aligned_cols=141  Identities=11%  Similarity=0.102  Sum_probs=119.9

Q ss_pred             hhhcCCcccceeccc--CceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           11 KATDHLNVNIVLGQG--GQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g--~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ...++|.+.+.||+|  +||.||++.. .+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++.+.+..
T Consensus        22 ~~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~  101 (389)
T 3gni_B           22 PEGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIADNEL  101 (389)
T ss_dssp             CCGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEE
T ss_pred             CCCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEECCEE
Confidence            456789999999999  9999999995 47999999987643  233456788899999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++|+||+++|+|.+++....   ......+..+.+++.++.+      +|+|+|++||+   +..+..++++|||.+.
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIl---l~~~~~~kl~dfg~~~  176 (389)
T 3gni_B          102 WVVTSFMAYGSAKDLICTHFMDGMNELAIAYILQGVLKALDYIHHMGYVHRSVKASHIL---ISVDGKVYLSGLRSNL  176 (389)
T ss_dssp             EEEEECCTTCBHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCGGGCE
T ss_pred             EEEEEccCCCCHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEcccccce
Confidence            99999999999999998652   2445566667788888877      47999999999   7888899999998764

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.90  E-value=1e-23  Score=151.60  Aligned_cols=139  Identities=19%  Similarity=0.184  Sum_probs=114.7

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc----ce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV----PL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~----~~   86 (167)
                      ...++|.+.+.||+|+||.||++.. .++.||+|.+... .........|+.++..++||||+++++++.....    ++
T Consensus        21 ~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~   98 (322)
T 3soc_A           21 FQSMPLQLLEVKARGRFGCVWKAQL-LNEYVAVKIFPIQ-DKQSWQNEYEVYSLPGMKHENILQFIGAEKRGTSVDVDLW   98 (322)
T ss_dssp             ETTEEEEEEEEEECSTTCEEEEEEE-TTEEEEEEEECGG-GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEE
T ss_pred             cchhhchhhheecccCceEEEEEEE-CCCEEEEEEeecC-chHHHHHHHHHHHHhcCCCCCchhhcceeccCCCCCceEE
Confidence            3457899999999999999999986 4789999988643 2333455678888999999999999999987543    69


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh----------------hhhcccchhHHHHhhhccCCcccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR----------------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~----------------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      +|+||+++|+|.+++..........+..+.+++.++.+                +|+|+|+.||+   +..+..++|+||
T Consensus        99 lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nil---l~~~~~~kL~DF  175 (322)
T 3soc_A           99 LITAFHEKGSLSDFLKANVVSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVL---LKNNLTACIADF  175 (322)
T ss_dssp             EEEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEE---ECTTCCEEECCC
T ss_pred             EEEecCCCCCHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEE---ECCCCeEEEccC
Confidence            99999999999999987665666666667777766654                57789999999   888889999999


Q ss_pred             chhh
Q 040049          151 EEEK  154 (167)
Q Consensus       151 ~~~~  154 (167)
                      |.++
T Consensus       176 g~a~  179 (322)
T 3soc_A          176 GLAL  179 (322)
T ss_dssp             TTCE
T ss_pred             Cccc
Confidence            9986

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=99.90  E-value=2e-23  Score=147.82  Aligned_cols=138  Identities=22%  Similarity=0.261  Sum_probs=117.6

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|+||.||++...+++.+|+|.+....  ......+.+|+.+++.++||||+++++++.+.+..++++||
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (288)
T 1ob3_A            2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (288)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             ccchhhhhcccCCCEEEEEEEcCCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEccCCeEEEEEEe
Confidence            5799999999999999999998778999999875443  23346788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++ +|.+.+.....  .....+..+.+++.++.++      |+|++++||+   +..+..++++|||.++.
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~~  149 (288)
T 1ob3_A           82 LDQ-DLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLL---INREGELKIADFGLARA  149 (288)
T ss_dssp             CSE-EHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECCTTHHHH
T ss_pred             cCC-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCCEEEeECccccc
Confidence            976 99998886432  4455666778888888874      6899999999   88888999999999874

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=99.90  E-value=4.3e-23  Score=147.73  Aligned_cols=140  Identities=21%  Similarity=0.216  Sum_probs=117.0

Q ss_pred             hcCCccc-ceecccCceeEEEEE-eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEE
Q 040049           13 TDHLNVN-IVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~-~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .+.|.+. +.||+|+||.||++. ..+++.+|+|.+..........+.+|+.++..+ +||||+++++++.+.+..++|+
T Consensus        11 ~~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~~~~~lv~   90 (316)
T 2ac3_A           11 EDVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEEDRFYLVF   90 (316)
T ss_dssp             TTSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             ceeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeCCEEEEEE
Confidence            4578875 789999999999998 457899999998766666678899999999885 7999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCC---ccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLA---PKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~---~~l~df~~~~~  155 (167)
                      ||+++|+|.+++..... .....+..+.+++.++.++      |+|++++||+   +..+..   ++++|||+++.
T Consensus        91 e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~~~~kl~Dfg~~~~  163 (316)
T 2ac3_A           91 EKMRGGSILSHIHKRRHFNELEASVVVQDVASALDFLHNKGIAHRDLKPENIL---CEHPNQVSPVKICDFDLGSG  163 (316)
T ss_dssp             ECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ESCSSSSCSEEECCTTCCC-
T ss_pred             EcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCceeCCCCHHHEE---EccCCCcCceEEEEccCccc
Confidence            99999999999987543 5556666778888888774      7899999999   655443   89999998763

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.90  E-value=2.9e-23  Score=145.24  Aligned_cols=141  Identities=24%  Similarity=0.361  Sum_probs=121.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ...++|.+.+.||+|+||.||++...+++.+++|.+.... ...+.+.+|+.+++.++||||+++++++..++..++++|
T Consensus         5 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   83 (267)
T 3t9t_A            5 IDPSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVTE   83 (267)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTTT-BCHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSCEEEEC
T ss_pred             EchhheeeeeEecCCCceeEEEEEecCCCeEEEEEccccC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEccCCCeEEEEe
Confidence            3467899999999999999999998788899999887543 344678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        84 ~~~~~~L~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil---i~~~~~~kl~dfg~~~~  153 (267)
T 3t9t_A           84 FMEHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCL---VGENQVIKVSDFGMTRF  153 (267)
T ss_dssp             CCTTCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEE---ECGGGCEEECCTTGGGG
T ss_pred             CCCCCcHHHHHhhCcccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEE---ECCCCCEEEcccccccc
Confidence            9999999999987542  455566667788888877      46899999999   77888999999999874

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=99.90  E-value=6e-24  Score=152.07  Aligned_cols=141  Identities=21%  Similarity=0.204  Sum_probs=117.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc--
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVP--   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~--   85 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....   .....+.+|+..+..++||||+++++++...+..  
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~   89 (311)
T 3ork_A           10 LSDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGP   89 (311)
T ss_dssp             ETTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEETTEE
T ss_pred             ecCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccCCCCc
Confidence            457899999999999999999995 6789999998865432   3345688999999999999999999998766543  


Q ss_pred             --eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 --LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 --~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                        ++||||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus        90 ~~~lv~e~~~g~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~a~~  165 (311)
T 3ork_A           90 LPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM---ISATNAVKVMDFGIARA  165 (311)
T ss_dssp             EEEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---EETTSCEEECCCSCC--
T ss_pred             ccEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEE---EcCCCCEEEeeccCccc
Confidence              999999999999999986543 555666777888888877      47899999999   78888999999999863

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=99.90  E-value=6.7e-24  Score=153.50  Aligned_cols=140  Identities=19%  Similarity=0.191  Sum_probs=118.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.+|+|.+...   .......+.+|+.+++.++||||+++++++.+++..++
T Consensus         7 ~i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~l   86 (336)
T 3h4j_B            7 HIGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTPTDIVM   86 (336)
T ss_dssp             EETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEE
Confidence            457899999999999999999995 68899999987532   12233578899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+ +|+|.+.+..... .....+..+.+++.++.++      |+|++++||+   +..+..++++|||+++.
T Consensus        87 v~E~~-~g~l~~~l~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl---l~~~~~~kl~DFG~s~~  157 (336)
T 3h4j_B           87 VIEYA-GGELFDYIVEKKRMTEDEGRRFFQQIICAIEYCHRHKIVHRDLKPENLL---LDDNLNVKIADFGLSNI  157 (336)
T ss_dssp             EECCC-CEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEE---ECTTCCEEECCSSCTBT
T ss_pred             EEECC-CCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCchhhEE---EcCCCCEEEEEecccee
Confidence            99999 6799998876543 5566677788888888874      6899999999   88888999999999874

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=99.90  E-value=8.3e-24  Score=154.98  Aligned_cols=141  Identities=18%  Similarity=0.117  Sum_probs=110.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHH-HhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVI-LSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~-~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+....   ......+..|..+ ++.++||||+++++++.+.+.+|
T Consensus        36 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~~~~~~  115 (373)
T 2r5t_A           36 KPSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQTADKLY  115 (373)
T ss_dssp             CGGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEECSSEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEeCCEEE
Confidence            457899999999999999999995 468899999875432   2233456667665 46789999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||++||+|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       116 lv~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIl---l~~~g~ikL~DFG~a~~  188 (373)
T 2r5t_A          116 FVLDYINGGELFYHLQRERCFLEPRARFYAAEIASALGYLHSLNIVYRDLKPENIL---LDSQGHIVLTDFGLCKE  188 (373)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCCCBCGG
T ss_pred             EEEeCCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEE---ECCCCCEEEeeCccccc
Confidence            99999999999999987543 455566667788888877      47899999999   88889999999999873

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.89  E-value=1.4e-23  Score=157.36  Aligned_cols=142  Identities=22%  Similarity=0.325  Sum_probs=119.0

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +....++|.+.+.||+|+||.||++....+..+|+|.+.... ...+.+.+|+.+++.++||||+++++++.. +..++|
T Consensus       179 ~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-~~~~iv  256 (452)
T 1fmk_A          179 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYIV  256 (452)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEEE
T ss_pred             cccChhHceeeeeecCCCCeEEEEEEECCCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC-CceEEE
Confidence            344567889999999999999999998777889999887543 345789999999999999999999999865 678999


Q ss_pred             EecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++|+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       257 ~e~~~~gsL~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nil---l~~~~~~kl~DfG~a~~  329 (452)
T 1fmk_A          257 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL---VGENLVCKVADFGLARL  329 (452)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCEEECCCCTTC-
T ss_pred             ehhhcCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEE---ECCCCCEEECCCcccee
Confidence            99999999999998532   2445566667888888877      57999999999   78888999999999874

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.89  E-value=1.1e-23  Score=148.93  Aligned_cols=146  Identities=23%  Similarity=0.324  Sum_probs=123.1

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ++++....++|.+.+.||+|+||.||++.. .++..+|+|.+.. .....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus         5 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~   83 (288)
T 3kfa_A            5 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKE-DTMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   83 (288)
T ss_dssp             CCTTBCCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECS-CSTHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             hhcccccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCc-CHHHHHHHHHHHHHHHhCCCCCEeeEEEEEccCCC
Confidence            345666788999999999999999999995 4688999998864 34456788999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++|+||+++++|.+++.....   .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        84 ~~~v~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~~l~Dfg~~~~  160 (288)
T 3kfa_A           84 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL---VGENHLVKVADFGLSRL  160 (288)
T ss_dssp             EEEEEECCTTEEHHHHHHHCCTTTSCHHHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEE---ECGGGCEEECCCCGGGT
T ss_pred             EEEEEEcCCCCcHHHHHHhcccCCccHhHHHHHHHHHHHHHHHHHHCCccCCCCCcceEE---EcCCCCEEEccCcccee
Confidence            9999999999999999986432   344555666778888877      57899999999   77888999999999874

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.89  E-value=1.5e-23  Score=150.54  Aligned_cols=150  Identities=22%  Similarity=0.361  Sum_probs=123.1

Q ss_pred             cccHHHHHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeee
Q 040049            3 IFSAKELDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKL   75 (167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l   75 (167)
                      .+..+++....++|.+.+.||+|+||.||+|...      ++..+|+|.+.... ......+.+|+.+++.++||||+++
T Consensus        14 ~~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~   93 (322)
T 1p4o_A           14 VYVPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRL   93 (322)
T ss_dssp             CCCCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCE
T ss_pred             ccChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeee
Confidence            3445666777889999999999999999999742      36789999886443 2344568899999999999999999


Q ss_pred             eeeeecCCcceEEEecCCCCCHHHHHhhcCc-----------chHhhHHHHHHHHcCchh------hhhcccchhHHHHh
Q 040049           76 LGCCLETEVPLLVYEYIPNGNLSDYLHEQNE-----------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQ  138 (167)
Q Consensus        76 ~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~-----------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~  138 (167)
                      ++++.+.+..++++||+++|+|.+++.....           .....+..+.+++.++.+      +|+|+++.||+   
T Consensus        94 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIl---  170 (322)
T 1p4o_A           94 LGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCM---  170 (322)
T ss_dssp             EEEECSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEE---
T ss_pred             EEEEccCCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEE---
Confidence            9999999999999999999999999986421           334455567778888876      47899999999   


Q ss_pred             hhccCCccccccchhhh
Q 040049          139 LLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       139 ~~~~~~~~l~df~~~~~  155 (167)
                      +..+..++++|||.++.
T Consensus       171 i~~~~~~kl~Dfg~~~~  187 (322)
T 1p4o_A          171 VAEDFTVKIGDFGMTRD  187 (322)
T ss_dssp             ECTTCCEEECCTTCCCG
T ss_pred             EcCCCeEEECcCccccc
Confidence            78888999999999873

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=99.89  E-value=1.4e-23  Score=160.55  Aligned_cols=142  Identities=21%  Similarity=0.167  Sum_probs=120.6

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..++||||+++++++.+.+.++
T Consensus       181 ~~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~  260 (576)
T 2acx_A          181 VTKNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYETKDALC  260 (576)
T ss_dssp             CCGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEE
T ss_pred             ccccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEeeCCEEE
Confidence            3457899999999999999999995 57999999987542   2334567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||++||+|.+.+....   ......+..+.+++.++.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus       261 lVmEy~~gg~L~~~l~~~~~~~l~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNIL---ld~~g~vKL~DFGla~~  335 (576)
T 2acx_A          261 LVLTLMNGGDLKFHIYHMGQAGFPEARAVFYAAEICCGLEDLHRERIVYRDLKPENIL---LDDHGHIRISDLGLAVH  335 (576)
T ss_dssp             EEECCCCSCBHHHHHHSSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEEEcCCCCcHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEE---EeCCCCeEEEeccccee
Confidence            9999999999999998654   24555666678888888874      6899999999   88889999999999874

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=99.89  E-value=5e-24  Score=159.42  Aligned_cols=141  Identities=18%  Similarity=0.075  Sum_probs=109.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.||+|.+...   .......+.+|+.+++.++||||+++++++.+.+.+++
T Consensus       146 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~~~~~l  225 (446)
T 4ejn_A          146 TMNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTHDRLCF  225 (446)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEETTEEEE
T ss_pred             ChHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeCCEEEE
Confidence            346899999999999999999984 57899999987542   33344567889999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+.+..... .....+..+.+++.++.|       +|+|+|++||+   +..+..++|+|||+++.
T Consensus       226 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIl---l~~~~~~kl~DFG~a~~  298 (446)
T 4ejn_A          226 VMEYANGGELFFHLSRERVFSEDRARFYGAEIVSALDYLHSEKNVVYRDLKLENLM---LDKDGHIKITDFGLCKE  298 (446)
T ss_dssp             EECCCSSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEE---ECSSSCEEECCCCCCCT
T ss_pred             EEeeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEE---ECCCCCEEEccCCCcee
Confidence            9999999999999986543 445556667777777766       46799999999   88889999999999873

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=99.89  E-value=2.7e-23  Score=147.40  Aligned_cols=138  Identities=21%  Similarity=0.298  Sum_probs=115.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++++++.+.+..++|+|
T Consensus         2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e   81 (292)
T 3o0g_A            2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeCCEEEEEEe
Confidence            5799999999999999999995 578999999876442  3345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++ ++.+.+....  ......+..+.+++.++.+      +|+|+|++||+   +..+..++++|||.++.
T Consensus        82 ~~~~-~l~~~~~~~~~~l~~~~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil---~~~~~~~kl~Dfg~~~~  150 (292)
T 3o0g_A           82 FCDQ-DLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLL---INRNGELKLANFGLARA  150 (292)
T ss_dssp             CCSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             cCCC-CHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EcCCCCEEEeeccccee
Confidence            9976 6666666533  2455666677888888877      46899999999   88888999999999863

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=99.89  E-value=7.7e-24  Score=153.28  Aligned_cols=144  Identities=17%  Similarity=0.149  Sum_probs=116.0

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-----CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-----GKGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-----~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      +....++|.+.+.||+|+||.||++.. .++..+|+|.+...     .....+.+.+|+.+++.++||||+++++++.+.
T Consensus        21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~  100 (345)
T 3hko_A           21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYEDE  100 (345)
T ss_dssp             HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEECS
T ss_pred             hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhccC
Confidence            445668899999999999999999985 57889999976432     345567899999999999999999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcC-----------------------------------------cchHhhHHHHHHHHcC
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQN-----------------------------------------EDFVKDVGFILSRRGG  121 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~-----------------------------------------~~~~~~~~~~~~i~~~  121 (167)
                      +..++|+||+++|+|.+.+....                                         ......+..+.+++.+
T Consensus       101 ~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~  180 (345)
T 3hko_A          101 QYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSA  180 (345)
T ss_dssp             SEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHH
Confidence            99999999999999999985210                                         0122344556778888


Q ss_pred             chh------hhhcccchhHHHHhhhccC--Cccccccchhhh
Q 040049          122 IPR------LKRKKKKNKIWKQQLLKGL--APKRKKFEEEKW  155 (167)
Q Consensus       122 l~~------~h~~~~~~~~~~~~~~~~~--~~~l~df~~~~~  155 (167)
                      +.+      +|+|+++.||+   +..+.  .++|+|||.++.
T Consensus       181 l~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~kl~Dfg~a~~  219 (345)
T 3hko_A          181 LHYLHNQGICHRDIKPENFL---FSTNKSFEIKLVDFGLSKE  219 (345)
T ss_dssp             HHHHHHTTEECCCCCGGGEE---ESCSSSCCEEECCCTTCEE
T ss_pred             HHHHHHCCccccCCChhhEE---EecCCCceEEEeecccccc
Confidence            877      47899999999   65544  789999999873

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=99.89  E-value=1.5e-23  Score=153.65  Aligned_cols=134  Identities=23%  Similarity=0.278  Sum_probs=108.3

Q ss_pred             cceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           19 NIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      .+.||+|+||.||+|.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++.+.+..++||||+++++|
T Consensus        94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~lv~E~~~~~~L  173 (373)
T 2x4f_A           94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESKNDIVLVMEYVDGGEL  173 (373)
T ss_dssp             EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEECCTTCEE
T ss_pred             ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEeCCCCCcH
Confidence            56799999999999985 57899999998766556667899999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhh--hccCCccccccchhhh
Q 040049           98 SDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQL--LKGLAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~--~~~~~~~l~df~~~~~  155 (167)
                      .+.+....  ......+..+.+++.++.++      |+|+++.||+   +  ..+..++|+|||+++.
T Consensus       174 ~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~kl~DFG~a~~  238 (373)
T 2x4f_A          174 FDRIIDESYNLTELDTILFMKQICEGIRHMHQMYILHLDLKPENIL---CVNRDAKQIKIIDFGLARR  238 (373)
T ss_dssp             HHHHHHTGGGCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---EEETTTTEEEECCCSSCEE
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCcccccCCHHHEE---EecCCCCcEEEEeCCCcee
Confidence            99887653  24445556677888888774      7899999998   5  3456789999999874

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=99.89  E-value=3.7e-23  Score=156.09  Aligned_cols=144  Identities=22%  Similarity=0.194  Sum_probs=119.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+....   ....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        24 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~l  103 (484)
T 3nyv_A           24 FSDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFEDKGYFYL  103 (484)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ccCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEeCCEEEE
Confidence            346799999999999999999995 478999999875432   3456789999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+||+||++..-..+..++|+|||+++.
T Consensus       104 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  178 (484)
T 3nyv_A          104 VGEVYTGGELFDEIISRKRFSEVDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTH  178 (484)
T ss_dssp             EECCCCSCBHHHHHHTCSCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHH
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEE
Confidence            9999999999999886643 455666677888888877      4799999999922114567889999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=99.89  E-value=3.9e-23  Score=147.02  Aligned_cols=140  Identities=17%  Similarity=0.204  Sum_probs=118.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+++|.+........+.+.+|+.++..++||||+++++++...+..++++|
T Consensus        17 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   96 (302)
T 2j7t_A           17 PNEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHDGKLWIMIE   96 (302)
T ss_dssp             GGGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC-CEEEEEE
T ss_pred             CccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeCCeEEEEEE
Confidence            457899999999999999999995 4689999999876666677889999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+.
T Consensus        97 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~  165 (302)
T 2j7t_A           97 FCPGGAVDAIMLELDRGLTEPQIQVVCRQMLEALNFLHSKRIIHRDLKAGNVL---MTLEGDIRLADFGVSA  165 (302)
T ss_dssp             CCTTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE---ECTTSCEEECCCHHHH
T ss_pred             eCCCCcHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEE---ECCCCCEEEEECCCCc
Confidence            999999999887643  3455666677788888877      47899999999   7888899999999875

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.89  E-value=1.6e-23  Score=150.47  Aligned_cols=145  Identities=19%  Similarity=0.353  Sum_probs=109.2

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeC-CCc---EEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLA-DER---IVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~~---~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      ++....++|.+.+.||+|+||.||++... ++.   .+|+|.+...  .....+.+.+|+.+++.++||||+++++++..
T Consensus        17 ~~~i~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~   96 (323)
T 3qup_A           17 DVLIPEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLR   96 (323)
T ss_dssp             TTBCC---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEEC
T ss_pred             hcccChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeec
Confidence            33445678999999999999999999843 333   7999987654  34456789999999999999999999999987


Q ss_pred             CCcc------eEEEecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc
Q 040049           82 TEVP------LLVYEYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        82 ~~~~------~lv~e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~  142 (167)
                      .+..      ++++||+++|+|.+++....       ......+..+.+++.++.+      +|+|+|++||+   +..+
T Consensus        97 ~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIl---i~~~  173 (323)
T 3qup_A           97 SRAKGRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCM---LAED  173 (323)
T ss_dssp             C-------CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTT
T ss_pred             cccccCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEE---EcCC
Confidence            6654      89999999999999997543       2344566667788888877      47899999999   8888


Q ss_pred             CCccccccchhhh
Q 040049          143 LAPKRKKFEEEKW  155 (167)
Q Consensus       143 ~~~~l~df~~~~~  155 (167)
                      ..++++|||.++.
T Consensus       174 ~~~kl~Dfg~a~~  186 (323)
T 3qup_A          174 MTVCVADFGLSRK  186 (323)
T ss_dssp             SCEEECCCCC---
T ss_pred             CCEEEeecccccc
Confidence            8999999999874

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=99.89  E-value=3.7e-23  Score=147.42  Aligned_cols=145  Identities=18%  Similarity=0.121  Sum_probs=117.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++.+.+..++++
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   85 (304)
T 2jam_A            6 NIRKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYESTTHYYLVM   85 (304)
T ss_dssp             CHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             chhccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhcccCCEEEEEE
Confidence            3457899999999999999999995 478999999987654445567889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||++..-..+..++++|||.++.
T Consensus        86 e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~  158 (304)
T 2jam_A           86 QLVSGGELFDRILERGVYTEKDASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKM  158 (304)
T ss_dssp             CCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCC
T ss_pred             EcCCCccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCccee
Confidence            99999999999876543 455666677888888877      4689999999821115677899999998874

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=99.89  E-value=2.4e-23  Score=149.42  Aligned_cols=140  Identities=21%  Similarity=0.274  Sum_probs=102.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+... .....+.+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus         3 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   82 (317)
T 2pmi_A            3 SSSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHTENKLTLVF   82 (317)
T ss_dssp             ----------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECCTTEEEEEE
T ss_pred             cccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEECCeEEEEE
Confidence            356899999999999999999984 57899999987643 2334467889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++ +|.+++....       ......+..+.+++.++.++      |+|+|++||+   +..+..++|+|||.++.
T Consensus        83 e~~~~-~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl---~~~~~~~kl~Dfg~~~~  157 (317)
T 2pmi_A           83 EFMDN-DLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLL---INKRGQLKLGDFGLARA  157 (317)
T ss_dssp             ECCCC-BHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCSSCEE
T ss_pred             EecCC-CHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeE---EcCCCCEEECcCcccee
Confidence            99985 9999987642       23344555567888888774      6899999999   88888999999999873

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=99.89  E-value=5e-23  Score=147.90  Aligned_cols=141  Identities=23%  Similarity=0.210  Sum_probs=118.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc------ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK------GKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....      ...+.+.+|+.+++.++||||+++++++.+.+.
T Consensus        10 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~   89 (321)
T 2a2a_A           10 VEDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYENRTD   89 (321)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSE
T ss_pred             hhccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEecCCE
Confidence            456799999999999999999995 4789999998754322      246778999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC----Cccccccchh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL----APKRKKFEEE  153 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~----~~~l~df~~~  153 (167)
                      .++++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+.    .++++|||.+
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl---~~~~~~~~~~~kl~Dfg~~  166 (321)
T 2a2a_A           90 VVLILELVSGGELFDFLAQKESLSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIM---LLDKNIPIPHIKLIDFGLA  166 (321)
T ss_dssp             EEEEECCCCSCBHHHHHHTCSCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESCTTSSSCCEEECCCTTC
T ss_pred             EEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEE---EecCCCCcCCEEEccCccc
Confidence            9999999999999999987543 5556677788888888774      7899999998   66655    6899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       167 ~~  168 (321)
T 2a2a_A          167 HE  168 (321)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=99.89  E-value=3.6e-23  Score=150.70  Aligned_cols=140  Identities=17%  Similarity=0.148  Sum_probs=119.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|.+.+.||+|+||.||++.. .++..+|+|.+... .....+.+.+|+.+++.++||||+++++++...+..++|||
T Consensus        32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e  111 (360)
T 3eqc_A           32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICME  111 (360)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEETTEEEEEEC
T ss_pred             cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEECCEEEEEEE
Confidence            46899999999999999999995 47899999987654 33445678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++..... .....+..+.+++.++.+       +|+|+++.||+   +..+..++|+|||.+..
T Consensus       112 ~~~~~~L~~~l~~~~~~~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~~  181 (360)
T 3eqc_A          112 HMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNIL---VNSRGEIKLCDFGVSGQ  181 (360)
T ss_dssp             CCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEE---ECTTCCEEECCCCCCHH
T ss_pred             CCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEcCCccHHHEE---ECCCCCEEEEECCCCcc
Confidence            9999999999987643 455566667777777765       57899999999   88888999999998863

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=99.89  E-value=2.8e-23  Score=150.95  Aligned_cols=139  Identities=18%  Similarity=0.167  Sum_probs=108.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.+|+|.+....  ..+.+.+|+.++..++||||+++++++.+.+..++|+|
T Consensus        51 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~lv~e  128 (349)
T 2w4o_A           51 LSDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFETPTEISLVLE  128 (349)
T ss_dssp             GGGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEECSSEEEEEEC
T ss_pred             ccCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEecCCeEEEEEE
Confidence            456799999999999999999995 468899999886432  33567789999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc---cCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK---GLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~---~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..   +..++|+|||.++.
T Consensus       129 ~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl---l~~~~~~~~~kl~Dfg~a~~  200 (349)
T 2w4o_A          129 LVTGGELFDRIVEKGYYSERDAADAVKQILEAVAYLHENGIVHRDLKPENLL---YATPAPDAPLKIADFGLSKI  200 (349)
T ss_dssp             CCCSCBHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ESSSSTTCCEEECCCC----
T ss_pred             eCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEecCCCcccEE---EecCCCCCCEEEccCccccc
Confidence            9999999999987643 455666777888888877      47899999999   543   77899999999874

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=99.89  E-value=2.1e-23  Score=157.81  Aligned_cols=140  Identities=19%  Similarity=0.180  Sum_probs=113.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .++|.+.+.||+|+||.||+|.. .++..+|+|.+....  ......+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus        36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv~  115 (494)
T 3lij_A           36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFEDKRNYYLVM  115 (494)
T ss_dssp             HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEeCCEEEEEE
Confidence            45799999999999999999995 478899999876432  334567899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc---cCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK---GLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~---~~~~~l~df~~~~~  155 (167)
                      |||++|+|.+.+..... .....+..+.+++.++.++      |+|+||.||+   +..   +..++|+|||+++.
T Consensus       116 e~~~~g~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil---~~~~~~~~~~kl~DfG~a~~  188 (494)
T 3lij_A          116 ECYKGGELFDEIIHRMKFNEVDAAVIIKQVLSGVTYLHKHNIVHRDLKPENLL---LESKEKDALIKIVDFGLSAV  188 (494)
T ss_dssp             ECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ESCSSTTCCEEECCCTTCEE
T ss_pred             ecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChhhEE---EeCCCCCCcEEEEECCCCeE
Confidence            99999999998876643 4556666778888888774      6899999999   543   45589999999863

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.89  E-value=1.8e-23  Score=159.61  Aligned_cols=143  Identities=22%  Similarity=0.323  Sum_probs=119.8

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .+....++|.+.+.||+|+||.||++.+..+..||+|.+.... ...+.+.+|+.+++.++||||+++++++.. +..++
T Consensus       261 ~~~i~~~~~~~~~~lG~G~fg~Vy~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-~~~~l  338 (535)
T 2h8h_A          261 AWEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE-EPIYI  338 (535)
T ss_dssp             CSBCCGGGEEEEEEEEECSSEEEEEEEETTTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSCEE
T ss_pred             ceecchhhhhhheecccCCCeEEEEEEECCCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee-ccceE
Confidence            3444567889999999999999999998777889999887543 345789999999999999999999999865 67899


Q ss_pred             EEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       339 v~e~~~~gsL~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl---l~~~~~~kl~DFG~a~~  412 (535)
T 2h8h_A          339 VTEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL---VGENLVCKVADFGLARL  412 (535)
T ss_dssp             EECCCTTEEHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCEEECCTTSTTT
T ss_pred             eeehhcCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEE---EcCCCcEEEccccccee
Confidence            999999999999998532   2445566667788888877      57899999999   77888999999999874

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.89  E-value=3e-23  Score=148.25  Aligned_cols=144  Identities=24%  Similarity=0.339  Sum_probs=119.8

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCCc-ccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVGK-GKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      +....++|.+.+.||+|+||.||++..      .++..+|+|.+..... ...+.+.+|+.++..+ +||||+++++++.
T Consensus        18 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~   97 (313)
T 1t46_A           18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (313)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             cccChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEe
Confidence            344567899999999999999999973      2467899998865432 3457789999999999 8999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcC-------------------cchHhhHHHHHHHHcCchh------hhhcccchhHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQN-------------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIW  135 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~-------------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~  135 (167)
                      ..+..++++||+++|+|.+++....                   ......+..+.+++.++.+      +|+|+++.||+
T Consensus        98 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil  177 (313)
T 1t46_A           98 IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (313)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             cCCCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEE
Confidence            9999999999999999999998653                   2344555667788888877      46899999999


Q ss_pred             HHhhhccCCccccccchhhh
Q 040049          136 KQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~~  155 (167)
                         +..+..++++|||.++.
T Consensus       178 ---~~~~~~~kl~Dfg~~~~  194 (313)
T 1t46_A          178 ---LTHGRITKICDFGLARD  194 (313)
T ss_dssp             ---EETTTEEEECCCGGGSC
T ss_pred             ---EcCCCCEEEcccccccc
Confidence               78888999999999873

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=99.89  E-value=2.2e-23  Score=156.32  Aligned_cols=139  Identities=19%  Similarity=0.245  Sum_probs=107.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----Cc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----EV   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~~   84 (167)
                      .++|.+.+.||+|+||.||++.. .+++.||+|.+...  .....+.+.+|+.+++.++||||+++++++...     ..
T Consensus        52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~  131 (458)
T 3rp9_A           52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE  131 (458)
T ss_dssp             CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred             CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence            46899999999999999999984 57899999987543  233456788999999999999999999998443     56


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|+|+|++. ++|.+++..... .....+..+.+++.++.|      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       132 ~~lv~e~~~-~~L~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NIL---l~~~~~~kl~DFGla~~  205 (458)
T 3rp9_A          132 LYVVLEIAD-SDFKKLFRTPVYLTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCL---VNQDCSVKVCDFGLART  205 (458)
T ss_dssp             EEEEECCCS-EEHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTCCEEECCCTTCBC
T ss_pred             EEEEEeccc-cchhhhcccCCCCCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEE---ECCCCCEeecccccchh
Confidence            899999984 599999887543 555666778888888887      57999999999   88889999999999974

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.89  E-value=1.5e-24  Score=156.78  Aligned_cols=140  Identities=14%  Similarity=0.207  Sum_probs=108.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--------cccHHHHHHHHHHHhcCC---------CCceee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--------KGKLDEFINKVVILSQIN---------YRNVVK   74 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--------~~~~~~~~~e~~~~~~l~---------h~~i~~   74 (167)
                      ..++|.+.+.||+|+||.||+|.. +++.||+|.+....        ....+.+.+|+.+++.++         |||+++
T Consensus        18 ~~~~y~~~~~lG~G~~g~V~~~~~-~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~   96 (336)
T 2vuw_A           18 PTEKLQRCEKIGEGVFGEVFQTIA-DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG   96 (336)
T ss_dssp             CHHHHHTCEEEEEETTEEEEEEEE-TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred             ccccchheeeecccCceEEEEEEe-CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence            346799999999999999999987 78999999876542        234477888998888775         555555


Q ss_pred             eeee-----------------eec-------------CCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh
Q 040049           75 LLGC-----------------CLE-------------TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR  124 (167)
Q Consensus        75 l~~~-----------------~~~-------------~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~  124 (167)
                      +.+.                 +.+             .+..++||||+++|++.+.+.+........+..+.|++.|+.+
T Consensus        97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~~~~~~~~~~i~~qi~~aL~~  176 (336)
T 2vuw_A           97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTKLSSLATAKSILHQLTASLAV  176 (336)
T ss_dssp             EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            5554                 433             6789999999999977777765444566677778888888877


Q ss_pred             h-------hhcccchhHHHHhhhccC--------------------Cccccccchhhh
Q 040049          125 L-------KRKKKKNKIWKQQLLKGL--------------------APKRKKFEEEKW  155 (167)
Q Consensus       125 ~-------h~~~~~~~~~~~~~~~~~--------------------~~~l~df~~~~~  155 (167)
                      +       |+|+||+||+   +....                    .++|+|||+|+.
T Consensus       177 lH~~~~ivHrDlKp~NIL---l~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~  231 (336)
T 2vuw_A          177 AEASLRFEHRDLHWGNVL---LKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRL  231 (336)
T ss_dssp             HHHHHCCBCSCCCGGGEE---EEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBE
T ss_pred             HHHhCCEeECCCCHHHEE---EeccCCcceeeeccCccccccCCCceEEEeeccccEe
Confidence            5       4799999999   66654                    899999999974

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=99.89  E-value=7e-23  Score=155.34  Aligned_cols=141  Identities=21%  Similarity=0.217  Sum_probs=115.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-------------ccHHHHHHHHHHHhcCCCCceeeeee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-------------GKLDEFINKVVILSQINYRNVVKLLG   77 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-------------~~~~~~~~e~~~~~~l~h~~i~~l~~   77 (167)
                      ..++|.+.+.||+|+||.||+|.. .++..+|+|.+.....             ...+.+.+|+.+++.++||||+++++
T Consensus        34 i~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~  113 (504)
T 3q5i_A           34 IGESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFD  113 (504)
T ss_dssp             GGGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEE
T ss_pred             cccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEE
Confidence            457899999999999999999995 5788999998754321             34567889999999999999999999


Q ss_pred             eeecCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc---CCccc
Q 040049           78 CCLETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG---LAPKR  147 (167)
Q Consensus        78 ~~~~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~---~~~~l  147 (167)
                      ++.+.+..++|+|||++|+|.+.+..... .....+..+.+++.++.++      |+|++|.||+   +..+   ..++|
T Consensus       114 ~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil---~~~~~~~~~~kl  190 (504)
T 3q5i_A          114 VFEDKKYFYLVTEFYEGGELFEQIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENIL---LENKNSLLNIKI  190 (504)
T ss_dssp             EEECSSEEEEEEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ESSTTCCSSEEE
T ss_pred             EEEcCCEEEEEEecCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEE---EecCCCCccEEE
Confidence            99999999999999999999999886543 5556667788888888774      6899999999   5544   36899


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||+++.
T Consensus       191 ~Dfg~a~~  198 (504)
T 3q5i_A          191 VDFGLSSF  198 (504)
T ss_dssp             CCCTTCEE
T ss_pred             EECCCCEE
Confidence            99999863

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=99.89  E-value=3.2e-23  Score=157.98  Aligned_cols=141  Identities=17%  Similarity=0.147  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .......+.+|+.++..++||||+++++++.+.+.+|+
T Consensus       183 ~~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~~~~l~l  262 (543)
T 3c4z_A          183 GEDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFETKTDLCL  262 (543)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEE
T ss_pred             ChhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEeeCCEEEE
Confidence            347899999999999999999995 57999999987542   22345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||++||+|.+++....     ......+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       263 VmE~~~gg~L~~~l~~~~~~~~~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NIL---l~~~g~vkL~DFGla~~  338 (543)
T 3c4z_A          263 VMTIMNGGDIRYHIYNVDEDNPGFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVL---LDDDGNVRISDLGLAVE  338 (543)
T ss_dssp             EECCCTTCBHHHHHHTSSTTSCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEEeccCCCHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEE---EeCCCCEEEeecceeee
Confidence            999999999999988643     2344556667788888877      46899999999   88889999999999873

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=99.89  E-value=3.2e-23  Score=156.54  Aligned_cols=144  Identities=20%  Similarity=0.204  Sum_probs=119.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv   99 (486)
T 3mwu_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (486)
T ss_dssp             HHHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEcCCEEEEE
Confidence            346799999999999999999995 47899999987532  234567889999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+||.||++..-..+..++|+|||+++.
T Consensus       100 ~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~  173 (486)
T 3mwu_A          100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTC  173 (486)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTT
T ss_pred             EEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeE
Confidence            999999999998876543 555666777888888877      5799999999922113456789999999863

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=99.89  E-value=2.7e-23  Score=151.34  Aligned_cols=148  Identities=19%  Similarity=0.117  Sum_probs=122.0

Q ss_pred             cccHHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-----CCceeeee
Q 040049            3 IFSAKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-----YRNVVKLL   76 (167)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-----h~~i~~l~   76 (167)
                      .+++++.....++|.+.+.||+|+||.||+|.. .+++.+|+|.+.. .......+..|+.++..+.     ||||++++
T Consensus        24 ~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~  102 (360)
T 3llt_A           24 HFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRN-IKKYTRSAKIEADILKKIQNDDINNNNIVKYH  102 (360)
T ss_dssp             SCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS-CHHHHHHHHHHHHHHHHTCCCSTTGGGBCCEE
T ss_pred             eeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEecc-chhhhhhhHHHHHHHHHhcccCCCCCCeeccc
Confidence            456666667788999999999999999999995 5789999998863 2334456778888888876     99999999


Q ss_pred             eeeecCCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc------
Q 040049           77 GCCLETEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK------  141 (167)
Q Consensus        77 ~~~~~~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~------  141 (167)
                      +++...+..++|+|++ +++|.+++....   ......+..+.+++.++.+      +|+|+|++||+   +..      
T Consensus       103 ~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~~~~~~  178 (360)
T 3llt_A          103 GKFMYYDHMCLIFEPL-GPSLYEIITRNNYNGFHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENIL---LDDPYFEKS  178 (360)
T ss_dssp             EEEEETTEEEEEECCC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ESCTTCCEE
T ss_pred             ceeeECCeeEEEEcCC-CCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEE---Ecccccccc
Confidence            9999999999999999 889999998764   2445566667888888887      47899999999   543      


Q ss_pred             -------------------cCCccccccchhhh
Q 040049          142 -------------------GLAPKRKKFEEEKW  155 (167)
Q Consensus       142 -------------------~~~~~l~df~~~~~  155 (167)
                                         ...++|+|||.+..
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~  211 (360)
T 3llt_A          179 LITVRRVTDGKKIQIYRTKSTGIKLIDFGCATF  211 (360)
T ss_dssp             EEEEECTTTCCEEEEEEESCCCEEECCCTTCEE
T ss_pred             ccchhcccccccccccccCCCCEEEEeccCcee
Confidence                               67889999999874

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.89  E-value=5.8e-23  Score=147.85  Aligned_cols=140  Identities=24%  Similarity=0.318  Sum_probs=118.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~   85 (167)
                      .++|.+.+.||+|+||.||++..     .+++.+|+|.+........+.+.+|+.+++.++||||+++++++..  .+..
T Consensus        22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~  101 (327)
T 3lxl_A           22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYGPGRQSL  101 (327)
T ss_dssp             GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSSCEE
T ss_pred             hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEecCCCceE
Confidence            46899999999999999999983     3678999999877666666779999999999999999999998864  4568


Q ss_pred             eEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       102 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl---~~~~~~~kl~Dfg~~~~  176 (327)
T 3lxl_A          102 RLVMEYLPSGCLRDFLQRHRARLDASRLLLYSSQICKGMEYLGSRRCVHRDLAARNIL---VESEAHVKIADFGLAKL  176 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEETTEEEECCGGGCEE
T ss_pred             EEEEeecCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChhhEE---ECCCCCEEEccccccee
Confidence            99999999999999998643  2455566667788888877      47899999999   88888999999999873

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.89  E-value=5.4e-23  Score=144.83  Aligned_cols=144  Identities=23%  Similarity=0.317  Sum_probs=119.9

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      +++....++|.+.+.||+|+||.||++...++..+|+|.+... ....+.+.+|+.+++.++||||+++++++. .+..+
T Consensus         6 ~~~~v~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~-~~~~~   83 (279)
T 1qpc_A            6 DEWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIY   83 (279)
T ss_dssp             CTTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCE
T ss_pred             hhcccCHHhhhheeeecCCCCeEEEEEEEcCCcEEEEEEecCC-cccHHHHHHHHHHHHhCCCcCcceEEEEEc-CCCcE
Confidence            4455667889999999999999999999777888999988643 334678899999999999999999999986 45689


Q ss_pred             EEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++++|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        84 ~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~kl~Dfg~~~~  158 (279)
T 1qpc_A           84 IITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANIL---VSDTLSCKIADFGLARL  158 (279)
T ss_dssp             EEEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEEecCCCCCHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEE---EcCCCCEEECCCccccc
Confidence            9999999999999997542   2445556667788888877      47899999999   78888999999999873

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.89  E-value=8.1e-23  Score=145.37  Aligned_cols=140  Identities=23%  Similarity=0.339  Sum_probs=115.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Cc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLET--EV   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~   84 (167)
                      .+.|.+.+.||+|+||.||++..     .+++.+|+|.+... .....+.+.+|+.+++.++||||+++++++...  +.
T Consensus        20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   99 (302)
T 4e5w_A           20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTEDGGNG   99 (302)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC---CC
T ss_pred             hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecCCCce
Confidence            45689999999999999999983     36889999987644 334567889999999999999999999999876  66


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++.....  .....+..+.+++.++.+      +|+|++++||+   +..+..++++|||.+..
T Consensus       100 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~kl~Dfg~~~~  175 (302)
T 4e5w_A          100 IKLIMEFLPSGSLKEYLPKNKNKINLKQQLKYAVQICKGMDYLGSRQYVHRDLAARNVL---VESEHQVKIGDFGLTKA  175 (302)
T ss_dssp             EEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEETTEEEECCCTTCEE
T ss_pred             EEEEEEeCCCCcHHHHHHhccccCCHHHHHHHHHHHHHHHHHhhcCCcccCCCchheEE---EcCCCCEEECccccccc
Confidence            8999999999999999965532  455566677788888877      47899999999   78888999999999863

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=99.89  E-value=6.2e-23  Score=146.58  Aligned_cols=139  Identities=20%  Similarity=0.150  Sum_probs=117.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+.....  ...+.+.+|+.+++.++||||+++++++...+..++|+|
T Consensus         3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   82 (311)
T 4agu_A            3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRKRRLHLVFE   82 (311)
T ss_dssp             CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecCCeEEEEEE
Confidence            6799999999999999999995 4689999998754432  234567899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++++|.+++..... +....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        83 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~~~~  151 (311)
T 4agu_A           83 YCDHTVLHELDRYQRGVPEHLVKSITWQTLQAVNFCHKHNCIHRDVKPENIL---ITKHSVIKLCDFGFARL  151 (311)
T ss_dssp             CCSEEHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             eCCCchHHHHHhhhcCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCChhhEE---EcCCCCEEEeeCCCchh
Confidence            9999999888775543 455566667788888877      46899999999   78888999999999863

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.89  E-value=7e-23  Score=147.88  Aligned_cols=142  Identities=23%  Similarity=0.356  Sum_probs=116.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC--------CCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      ...++|.+.+.||+|+||.||++...        ++..+|+|.+.... ......+.+|+.+++.+ +||||+++++++.
T Consensus        32 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  111 (334)
T 2pvf_A           32 FPRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACT  111 (334)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             CCHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEc
Confidence            34578999999999999999999852        46789999886542 34456788999999999 8999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      ..+..++|+||+++|+|.+++.....                 .....+..+.+++.++.+      +|+|+++.||+  
T Consensus       112 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl--  189 (334)
T 2pvf_A          112 QDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVL--  189 (334)
T ss_dssp             SSSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE--
T ss_pred             cCCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEE--
Confidence            99999999999999999999986541                 233445567788888877      47899999999  


Q ss_pred             hhhccCCccccccchhhh
Q 040049          138 QLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~~  155 (167)
                       +..+..++|+|||.++.
T Consensus       190 -l~~~~~~kL~Dfg~~~~  206 (334)
T 2pvf_A          190 -VTENNVMKIADFGLARD  206 (334)
T ss_dssp             -ECTTCCEEECCCTTCEE
T ss_pred             -EcCCCCEEEcccccccc
Confidence             78888999999999863

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.89  E-value=3.6e-23  Score=149.76  Aligned_cols=142  Identities=25%  Similarity=0.385  Sum_probs=116.1

Q ss_pred             HhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ....++|.+.+.||+|+||.||++..      .++..+|+|.+... .....+.+.+|+.++..+ +||||+++++++..
T Consensus        41 ~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~  120 (344)
T 1rjb_A           41 EFPRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL  120 (344)
T ss_dssp             BCCGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred             ccCHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee
Confidence            34567899999999999999999984      24568999987643 233456789999999999 89999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCc------------------------chHhhHHHHHHHHcCchhh------hhcccc
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNE------------------------DFVKDVGFILSRRGGIPRL------KRKKKK  131 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~------------------------~~~~~~~~~~~i~~~l~~~------h~~~~~  131 (167)
                      .+..++|+||+++|+|.+++.....                        .....+..+.+++.++.++      |+|+++
T Consensus       121 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp  200 (344)
T 1rjb_A          121 SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAA  200 (344)
T ss_dssp             SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSG
T ss_pred             CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCh
Confidence            9999999999999999999986532                        2334455677788888774      789999


Q ss_pred             hhHHHHhhhccCCccccccchhh
Q 040049          132 NKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       132 ~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      .||+   +..+..++|+|||.+.
T Consensus       201 ~NIl---l~~~~~~kL~Dfg~~~  220 (344)
T 1rjb_A          201 RNVL---VTHGKVVKICDFGLAR  220 (344)
T ss_dssp             GGEE---EETTTEEEECCCGGGS
T ss_pred             hhEE---EcCCCcEEeCCCccCc
Confidence            9999   7888899999999987

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=99.89  E-value=8e-23  Score=144.59  Aligned_cols=144  Identities=14%  Similarity=0.111  Sum_probs=117.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+++|.+... .....+.+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus        20 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~lv~   99 (285)
T 3is5_A           20 IDDLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFEDYHNMYIVM   99 (285)
T ss_dssp             HHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             hhhheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheecCCeEEEEE
Confidence            346799999999999999999985 57889999987544 3345678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+.+...     .......+..+.+++.++.+      +|+|+++.||++..-.....++|+|||.++.
T Consensus       100 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~  176 (285)
T 3is5_A          100 ETCEGGELLERIVSAQARGKALSEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAEL  176 (285)
T ss_dssp             CCCSCCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC
T ss_pred             EeCCCCcHHHHHHhhhhcccCCCHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeeccee
Confidence            999999999998653     12445566677788888877      4789999999922114456789999999874

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.89  E-value=3e-23  Score=153.06  Aligned_cols=141  Identities=22%  Similarity=0.267  Sum_probs=116.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC--cceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETE--VPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~--~~~l   87 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+  ..++
T Consensus         7 ~~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~l   86 (396)
T 4eut_A            7 SNHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEETTTRHKVL   86 (396)
T ss_dssp             SSEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECTTTCCEEE
T ss_pred             CCCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccCCCCeeEE
Confidence            356899999999999999999995 468999999876432 344677889999999999999999999998765  6799


Q ss_pred             EEecCCCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh----hccCCccccccchh
Q 040049           88 VYEYIPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL----LKGLAPKRKKFEEE  153 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~----~~~~~~~l~df~~~  153 (167)
                      |+||+++|+|.+++....    ......+..+.+++.++.+      +|+|+|++||+   +    .....++|+|||.+
T Consensus        87 v~e~~~~g~L~~~l~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~~kL~DFG~a  163 (396)
T 4eut_A           87 IMEFCPCGSLYTVLEEPSNAYGLPESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIM---RVIGEDGQSVYKLTDFGAA  163 (396)
T ss_dssp             EECCCTTEEHHHHTTSGGGTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---EEECTTSCEEEEECCGGGC
T ss_pred             EEecCCCCCHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEE---EeecCCCceeEEEecCCCc
Confidence            999999999999998654    2445556667788888877      47899999998   5    45566899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       164 ~~  165 (396)
T 4eut_A          164 RE  165 (396)
T ss_dssp             EE
T ss_pred             eE
Confidence            63

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.89  E-value=9.4e-23  Score=142.99  Aligned_cols=140  Identities=21%  Similarity=0.285  Sum_probs=112.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC----cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG----KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+..+|+|.+....    ....+.+.+|+.+++.++||||+++++++...+..++
T Consensus         5 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   83 (271)
T 3dtc_A            5 DFAELTLEEIIGIGGFGKVYRAFW-IGDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKEPNLCL   83 (271)
T ss_dssp             CTTSEEEEEEEEEETTEEEEEEEE-TTEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC--CEE
T ss_pred             chhheeeeeeeccCCCeEEEEEEE-cCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecCCceEE
Confidence            457899999999999999999986 48889999875432    2335678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh---------hhhcccchhHHHHhhhc--------cCCcccccc
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR---------LKRKKKKNKIWKQQLLK--------GLAPKRKKF  150 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~---------~h~~~~~~~~~~~~~~~--------~~~~~l~df  150 (167)
                      ++||+++++|.+++..........+..+.+++.++.+         +|+|++++||+   +..        +..++++||
T Consensus        84 v~e~~~~~~L~~~~~~~~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil---~~~~~~~~~~~~~~~kl~Df  160 (271)
T 3dtc_A           84 VMEFARGGPLNRVLSGKRIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNIL---ILQKVENGDLSNKILKITDF  160 (271)
T ss_dssp             EEECCTTEEHHHHHTSSCCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEE---ESSCCSSSCCSSCCEEECCC
T ss_pred             EEEcCCCCCHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEE---EecccccccccCcceEEccC
Confidence            9999999999999976655666777778888887765         48899999999   554        567899999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       161 g~~~~  165 (271)
T 3dtc_A          161 GLARE  165 (271)
T ss_dssp             CC---
T ss_pred             Ccccc
Confidence            99873

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.89  E-value=1.1e-22  Score=144.54  Aligned_cols=136  Identities=20%  Similarity=0.259  Sum_probs=112.2

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhc--CCCCceeeeeeeeecC----Ccc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQ--INYRNVVKLLGCCLET----EVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~--l~h~~i~~l~~~~~~~----~~~   85 (167)
                      ..++|.+.+.||+|+||.||++.. +++.+|+|.+...   ....+..|.+++..  ++||||+++++++...    +..
T Consensus         6 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~   81 (301)
T 3q4u_A            6 VARDITLLECVGKGRYGEVWRGSW-QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQL   81 (301)
T ss_dssp             CGGGCEEEEEEEECSSEEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCcEEEEEeeccCCCcEEEEEEE-CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCcee
Confidence            457899999999999999999987 6889999987532   33556667666665  7899999999986543    458


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhh--------------hcccchhHHHHhhhccCCccccccc
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLK--------------RKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h--------------~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      ++++||+++|+|.++++.........+..+.+++.++.++|              +|+|++||+   +..+..++|+|||
T Consensus        82 ~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nil---l~~~~~~kl~Dfg  158 (301)
T 3q4u_A           82 WLITHYHEMGSLYDYLQLTTLDTVSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNIL---VKKNGQCCIADLG  158 (301)
T ss_dssp             EEEECCCTTCBHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEE---ECTTSCEEECCCT
T ss_pred             EEehhhccCCCHHHHHhhcccCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEE---EcCCCCEEEeeCC
Confidence            89999999999999998766566667777788887777665              799999999   8888899999999


Q ss_pred             hhh
Q 040049          152 EEK  154 (167)
Q Consensus       152 ~~~  154 (167)
                      .++
T Consensus       159 ~a~  161 (301)
T 3q4u_A          159 LAV  161 (301)
T ss_dssp             TCE
T ss_pred             Cee
Confidence            985

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.89  E-value=3.9e-23  Score=150.88  Aligned_cols=139  Identities=14%  Similarity=0.098  Sum_probs=113.2

Q ss_pred             hhhcCCcccceecccCceeEEEEE------eCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC---CCceeeeeeeeec
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGM------LADERIVAVKKSKVVGKGKLDEFINKVVILSQIN---YRNVVKLLGCCLE   81 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~------~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~---h~~i~~l~~~~~~   81 (167)
                      ...++|.+.+.||+|+||.||+|.      ..+++.+|+|.+...   ....+..|+.++..++   |+|++.+++++..
T Consensus        62 ~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~  138 (365)
T 3e7e_A           62 LGSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLF  138 (365)
T ss_dssp             CSSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEEC
T ss_pred             ECCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeec
Confidence            345779999999999999999993      346889999998644   3456667777777775   8999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhc------CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc--------
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQ------NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK--------  141 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~------~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~--------  141 (167)
                      .+..++||||+++|+|.+++...      .......+..+.+++.|+.|      +|+|+|++||+   +..        
T Consensus       139 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIl---l~~~~~~~~~~  215 (365)
T 3e7e_A          139 QNGSVLVGELYSYGTLLNAINLYKNTPEKVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFI---LGNGFLEQDDE  215 (365)
T ss_dssp             SSCEEEEECCCCSCBHHHHHHHHHTSTTCSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEE---ECGGGTCC---
T ss_pred             CCCcEEEEeccCCCcHHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEE---ecccccCcccc
Confidence            99999999999999999999742      22445566777888888877      57999999999   666        


Q ss_pred             ---cCCccccccchhhh
Q 040049          142 ---GLAPKRKKFEEEKW  155 (167)
Q Consensus       142 ---~~~~~l~df~~~~~  155 (167)
                         ...++|+|||+|+.
T Consensus       216 ~~~~~~~kl~DFG~a~~  232 (365)
T 3e7e_A          216 DDLSAGLALIDLGQSID  232 (365)
T ss_dssp             ---CTTEEECCCTTCEE
T ss_pred             ccccCCEEEeeCchhhh
Confidence               78899999999963

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.89  E-value=1.4e-22  Score=145.38  Aligned_cols=138  Identities=25%  Similarity=0.316  Sum_probs=116.7

Q ss_pred             CCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--Ccce
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPL   86 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~   86 (167)
                      .|.+++.||+|+||.||++..     .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+.  ...+
T Consensus        32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~  111 (318)
T 3lxp_A           32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDAGAASLQ  111 (318)
T ss_dssp             GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTTTEEE
T ss_pred             HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecCCCceEE
Confidence            348999999999999988853     267899999886543 34456789999999999999999999999874  5688


Q ss_pred             EEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|+||+++|+|.+++..........+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.+..
T Consensus       112 lv~e~~~~~~L~~~l~~~~~~~~~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil---~~~~~~~kl~Dfg~a~~  183 (318)
T 3lxp_A          112 LVMEYVPLGSLRDYLPRHSIGLAQLLLFAQQICEGMAYLHAQHYIHRDLAARNVL---LDNDRLVKIGDFGLAKA  183 (318)
T ss_dssp             EEECCCTTCBHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCGGGCEE
T ss_pred             EEEecccCCcHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEE---EcCCCCEEECCcccccc
Confidence            99999999999999987766667777778888888877      47899999999   88888999999999874

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=146.59  Aligned_cols=141  Identities=28%  Similarity=0.403  Sum_probs=118.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-----CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC--c
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-----ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE--V   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-----~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~--~   84 (167)
                      ..++|.+.+.||+|+||.||++..     .+++.+|+|.+........+.+.+|+.+++.++||||+++++++...+  .
T Consensus        39 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  118 (326)
T 2w1i_A           39 EERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSAGRRN  118 (326)
T ss_dssp             CGGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC----C
T ss_pred             CHHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEecCCCc
Confidence            346789999999999999999973     368899999987766666778999999999999999999999986654  7


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++|+||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       119 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIl---i~~~~~~kL~Dfg~~~~  194 (326)
T 2w1i_A          119 LKLIMEYLPYGSLRDYLQKHKERIDHIKLLQYTSQICKGMEYLGTKRYIHRDLATRNIL---VENENRVKIGDFGLTKV  194 (326)
T ss_dssp             CEEEECCCTTCBHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---EEETTEEEECCCTTCEE
T ss_pred             eEEEEECCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEE---EcCCCcEEEecCcchhh
Confidence            8999999999999999987542  445566667788888877      46899999999   78888999999999863

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.89  E-value=4.6e-23  Score=147.66  Aligned_cols=140  Identities=18%  Similarity=0.182  Sum_probs=116.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++..    .+..+
T Consensus        27 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~  106 (317)
T 2buj_A           27 DNKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRERGAKHEAW  106 (317)
T ss_dssp             TTEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEEETTEEEEE
T ss_pred             CCeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEeccCCCceeE
Confidence            457899999999999999999995 6789999998866666667789999999999999999999999863    34788


Q ss_pred             EEEecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++||+++|+|.+++...     .......+..+.+++.++.++      |+|+++.||+   +..+..++++|||.++
T Consensus       107 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl---~~~~~~~kl~dfg~~~  182 (317)
T 2buj_A          107 LLLPFFKRGTLWNEIERLKDKGNFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNIL---LGDEGQPVLMDLGSMN  182 (317)
T ss_dssp             EEEECCTTCBHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTSCEEECCCSSCE
T ss_pred             EEEEeCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---EcCCCCEEEEecCcch
Confidence            999999999999999862     124556667788888888874      6899999999   7788899999999765

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=99.89  E-value=7.1e-23  Score=143.97  Aligned_cols=145  Identities=18%  Similarity=0.201  Sum_probs=121.4

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      +.....++|.+.+.||+|+||.||++.. .+++.+++|.+...   .....+.+.+|+..++.++||||+++++++...+
T Consensus         5 ~g~~~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~   84 (276)
T 2h6d_A            5 DGRVKIGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVISTPT   84 (276)
T ss_dssp             --CCEETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSS
T ss_pred             cCcceeccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEecCC
Confidence            3444568899999999999999999995 47899999987542   2234567889999999999999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+..
T Consensus        85 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~~l~dfg~~~~  160 (276)
T 2h6d_A           85 DFFMVMEYVSGGELFDYICKHGRVEEMEARRLFQQILSAVDYCHRHMVVHRDLKPENVL---LDAHMNAKIADFGLSNM  160 (276)
T ss_dssp             EEEEEEECCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEE---ECTTSCEEECCCCGGGC
T ss_pred             eEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChhhEE---ECCCCCEEEeecccccc
Confidence            99999999999999999986543 4556667778888888774      6899999999   78888999999999874

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=99.88  E-value=5.3e-23  Score=153.35  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=118.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----C
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----E   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~   83 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.||+|.+...  .......+.+|+.+++.++||||+++++++...     +
T Consensus        24 i~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~  103 (432)
T 3n9x_A           24 VPDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFD  103 (432)
T ss_dssp             CCTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCC
T ss_pred             ecCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCC
Confidence            357899999999999999999995 57899999988653  233456789999999999999999999999766     5


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+|+|+||+.+ +|.+.+..... .....+..+.+++.|+.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus       104 ~~~lv~e~~~~-~L~~~~~~~~~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NIL---l~~~~~~kL~DFGla~~  178 (432)
T 3n9x_A          104 ELYIVLEIADS-DLKKLFKTPIFLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCL---LNQDCSVKVCDFGLART  178 (432)
T ss_dssp             CEEEEEECCSE-EHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             eEEEEEecCCc-CHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeE---ECCCCCEEEccCCCccc
Confidence            68999999864 99999987543 5566677788888888874      6899999999   88889999999999974

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=99.88  E-value=6.9e-23  Score=150.71  Aligned_cols=140  Identities=21%  Similarity=0.245  Sum_probs=110.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCC--cc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETE--VP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~--~~   85 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.||+|.+...  .......+.+|+.++..+. ||||+++++++...+  .+
T Consensus         7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~~~~~~   86 (388)
T 3oz6_A            7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRADNDRDV   86 (388)
T ss_dssp             HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECTTSSCE
T ss_pred             ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecCCCCEE
Confidence            467899999999999999999984 57899999987543  3345567889999999997 999999999997554  68


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|+||+++ +|.+.+.............+.+++.++.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus        87 ~lv~e~~~~-~L~~~~~~~~~~~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIl---l~~~~~~kl~DFG~a~~  158 (388)
T 3oz6_A           87 YLVFDYMET-DLHAVIRANILEPVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNIL---LNAECHVKVADFGLSRS  158 (388)
T ss_dssp             EEEEECCSE-EHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEEecccCc-CHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeE---EcCCCCEEecCCccccc
Confidence            999999975 999999876555566666777888888874      6999999999   88889999999999873

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=99.88  E-value=7.6e-23  Score=147.81  Aligned_cols=141  Identities=15%  Similarity=0.130  Sum_probs=119.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        39 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~l  118 (335)
T 2owb_A           39 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV  118 (335)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEecCCeEEE
Confidence            346899999999999999999995 46889999987543   23455678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+..++|+|||.++.
T Consensus       119 v~e~~~~~~L~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl---~~~~~~~kl~Dfg~~~~  190 (335)
T 2owb_A          119 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLF---LNEDLEVKIGDFGLATK  190 (335)
T ss_dssp             EECCCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCEecCCCchhEE---EcCCCCEEEeeccCcee
Confidence            9999999999999886543 5566677788888888774      6899999999   78888999999999873

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.88  E-value=4.6e-23  Score=160.99  Aligned_cols=140  Identities=19%  Similarity=0.173  Sum_probs=119.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+..|..++..+ +||+|+++++++.+.+.+|
T Consensus       339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~~~~~~~  418 (674)
T 3pfq_A          339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQTMDRLY  418 (674)
T ss_dssp             -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECBCSSEEE
T ss_pred             cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEEeCCEEE
Confidence            456899999999999999999994 57889999987532   233456788899999987 6999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||||+++|+|.+++..... .....+..+.+++.|+.|      +|+|+|++||+   ++.+..++|+|||+++
T Consensus       419 lV~E~~~gg~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NIL---l~~~g~ikL~DFGla~  490 (674)
T 3pfq_A          419 FVMEYVNGGDLMYHIQQVGRFKEPHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVM---LDSEGHIKIADFGMCK  490 (674)
T ss_dssp             EEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEE---ECSSSCEEECCCTTCE
T ss_pred             EEEeCcCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEeccCChhhEE---EcCCCcEEEeecceee
Confidence            99999999999999987543 556666778888888887      46999999999   8889999999999987

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=99.88  E-value=1.2e-22  Score=143.22  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=116.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+..+..+ +||||+++++++.+.+..++
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~~~~~l   88 (289)
T 1x8b_A            9 YTTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAEDDHMLI   88 (289)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEETTEEEE
T ss_pred             ccchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecCCeEEE
Confidence            357899999999999999999995 47899999987653  233456788899999988 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhh----------------
Q 040049           88 VYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLL----------------  140 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~----------------  140 (167)
                      |+||+++++|.+++....     ......+..+.+++.++.++      |+|+++.||+   +.                
T Consensus        89 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl---~~~~~~~~~~~~~~~~~~  165 (289)
T 1x8b_A           89 QNEYCNGGSLADAISENYRIMSYFKEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIF---ISRTSIPNAASEEGDEDD  165 (289)
T ss_dssp             EEECCTTCBHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EC----------------
T ss_pred             EEEecCCCcHHHHHHhhcccccCCCHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEE---EcCCCCCccccccccccc
Confidence            999999999999998642     24556667788888888874      7899999999   54                


Q ss_pred             ---ccCCccccccchhhh
Q 040049          141 ---KGLAPKRKKFEEEKW  155 (167)
Q Consensus       141 ---~~~~~~l~df~~~~~  155 (167)
                         ....++++|||.+..
T Consensus       166 ~~~~~~~~kl~Dfg~~~~  183 (289)
T 1x8b_A          166 WASNKVMFKIGDLGHVTR  183 (289)
T ss_dssp             ----CCCEEECCCTTCEE
T ss_pred             ccCCceEEEEcccccccc
Confidence               344789999998763

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.88  E-value=1.4e-22  Score=144.89  Aligned_cols=142  Identities=15%  Similarity=0.090  Sum_probs=117.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+.....   ...+.+.+|+.++..++||||+++++++...+..+
T Consensus        31 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~  110 (309)
T 2h34_A           31 TQFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEIDGQLY  110 (309)
T ss_dssp             ---CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEE
T ss_pred             cEeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeCCeEE
Confidence            3457899999999999999999995 4789999998765422   23467889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus       111 lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl---~~~~~~~kl~Dfg~~~~  183 (309)
T 2h34_A          111 VDMRLINGVDLAAMLRRQGPLAPPRAVAIVRQIGSALDAAHAAGATHRDVKPENIL---VSADDFAYLVDFGIASA  183 (309)
T ss_dssp             EEEECCCCEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECSCCC---
T ss_pred             EEEEecCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEE---EcCCCCEEEecCccCcc
Confidence            99999999999999987543 555666777888888877      47899999999   78888999999998764

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=99.88  E-value=1.1e-22  Score=144.26  Aligned_cols=141  Identities=15%  Similarity=0.130  Sum_probs=119.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..++
T Consensus        13 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~l   92 (294)
T 2rku_A           13 SRRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFEDNDFVFV   92 (294)
T ss_dssp             TTEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             cccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeeccCCEEEE
Confidence            456899999999999999999995 46888999987543   23345678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+..
T Consensus        93 v~e~~~~~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~dfg~~~~  164 (294)
T 2rku_A           93 VLELCRRRSLLELHKRRKALTEPEARYYLRQIVLGCQYLHRNRVIHRDLKLGNLF---LNEDLEVKIGDFGLATK  164 (294)
T ss_dssp             EEECCTTCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEE---EcCCCCEEEEeccCcee
Confidence            9999999999999886543 5556667778888888774      6899999999   78888999999999863

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=99.88  E-value=1.1e-22  Score=145.40  Aligned_cols=149  Identities=26%  Similarity=0.340  Sum_probs=120.6

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeee
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKL   75 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l   75 (167)
                      ++..++....++|.+.+.||+|+||.||++..      .+++.+|+|.+.... ....+.+.+|+.++..+ +||||+++
T Consensus        17 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~   96 (316)
T 2xir_A           17 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL   96 (316)
T ss_dssp             CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred             ccccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeE
Confidence            34556666778999999999999999999973      246889999886543 33456788999999999 68999999


Q ss_pred             eeeeecCC-cceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccc
Q 040049           76 LGCCLETE-VPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKK  131 (167)
Q Consensus        76 ~~~~~~~~-~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~  131 (167)
                      ++++...+ ..++++||+++++|.+++.....                 .....+..+.+++.++.+      +|+|+++
T Consensus        97 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp  176 (316)
T 2xir_A           97 LGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAA  176 (316)
T ss_dssp             EEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSG
T ss_pred             EEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCcc
Confidence            99987654 58999999999999999987542                 334455667788888877      4789999


Q ss_pred             hhHHHHhhhccCCccccccchhhh
Q 040049          132 NKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       132 ~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .||+   +..+..++++|||.++.
T Consensus       177 ~Nil---~~~~~~~kl~Dfg~~~~  197 (316)
T 2xir_A          177 RNIL---LSEKNVVKICDFGLARD  197 (316)
T ss_dssp             GGEE---ECGGGCEEECCCGGGSC
T ss_pred             ceEE---ECCCCCEEECCCccccc
Confidence            9999   77888999999999873

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.88  E-value=7.4e-23  Score=144.38  Aligned_cols=144  Identities=17%  Similarity=0.326  Sum_probs=112.3

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      +.....++|.+.+.||+|+||.||++...    .+..+++|...... ....+.+.+|+.+++.++||||+++++++ ..
T Consensus         9 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~-~~   87 (281)
T 1mp8_A            9 DYEIQRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVI-TE   87 (281)
T ss_dssp             CCBCCGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEE-CS
T ss_pred             ceEEehHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEE-cc
Confidence            33445678999999999999999999853    24568999876533 33456789999999999999999999998 45


Q ss_pred             CcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +..++|+||+++++|.+++....  ......+..+.+++.++.+      +|+|++++||+   +..+..++++|||.++
T Consensus        88 ~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~  164 (281)
T 1mp8_A           88 NPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL---VSSNDCVKLGDFGLSR  164 (281)
T ss_dssp             SSCEEEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECC-----
T ss_pred             CccEEEEecCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHEE---ECCCCCEEECcccccc
Confidence            67899999999999999998654  2445556667788888877      47899999999   7888899999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       165 ~  165 (281)
T 1mp8_A          165 Y  165 (281)
T ss_dssp             -
T ss_pred             c
Confidence            4

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=99.88  E-value=9.5e-23  Score=143.53  Aligned_cols=144  Identities=19%  Similarity=0.249  Sum_probs=121.6

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      +....++|.+.+.||+|+||.||++.. .+++.+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus         6 ~g~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~   85 (278)
T 3cok_A            6 IGEKIEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFEDSNY   85 (278)
T ss_dssp             HCSSGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEECSSE
T ss_pred             cccccccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEccCCe
Confidence            344567899999999999999999985 57899999987532   12335678899999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++.....  .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+..
T Consensus        86 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---i~~~~~~kl~dfg~~~~  161 (278)
T 3cok_A           86 VYLVLEMCHNGEMNRYLKNRVKPFSENEARHFMHQIITGMLYLHSHGILHRDLTLSNLL---LTRNMNIKIADFGLATQ  161 (278)
T ss_dssp             EEEEEECCTTEEHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEEEEecCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEE---EcCCCCEEEEeecceee
Confidence            9999999999999999987532  4556667778888888775      6899999999   78888999999998863

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=99.88  E-value=9e-23  Score=147.09  Aligned_cols=142  Identities=22%  Similarity=0.320  Sum_probs=113.3

Q ss_pred             HhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ....++|.+.+.||+|+||.||++.. .+++.+|+|.+.....  .....+.+|+.+++.++||||+++++++.+.+..+
T Consensus        30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  109 (329)
T 3gbz_A           30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHNHRLH  109 (329)
T ss_dssp             --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEETTEEE
T ss_pred             ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecCCEEE
Confidence            34567899999999999999999984 5789999998864432  23456779999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhh-----hccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL-----LKGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~-----~~~~~~~l~df~~~~  154 (167)
                      +|+||+++ +|.+++..... .....+..+.+++.++.+      +|+|+|++||+   +     .....++|+|||.++
T Consensus       110 lv~e~~~~-~L~~~~~~~~~~~~~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~~~kl~Dfg~a~  185 (329)
T 3gbz_A          110 LIFEYAEN-DLKKYMDKNPDVSMRVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLL---LSVSDASETPVLKIGDFGLAR  185 (329)
T ss_dssp             EEEECCSE-EHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EEC-----CCEEEECCTTHHH
T ss_pred             EEEecCCC-CHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEE---EecCCCCccceEEECcCCCcc
Confidence            99999975 99999987643 455566677888888877      47899999999   5     334458999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       186 ~  186 (329)
T 3gbz_A          186 A  186 (329)
T ss_dssp             H
T ss_pred             c
Confidence            4

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=99.88  E-value=3.3e-23  Score=148.34  Aligned_cols=138  Identities=19%  Similarity=0.081  Sum_probs=111.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||+|.. .+++.+|+|.+....  .........|+..+..+ +||||+++++++.+.+..++|+
T Consensus        57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~~~~~lv~  136 (311)
T 3p1a_A           57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEGGILYLQT  136 (311)
T ss_dssp             HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeCCEEEEEE
Confidence            6799999999999999999995 478999999875432  22334455566555554 8999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+ +++|.+.+.....  .....+..+.+++.++.++      |+|+|++||+   +..+..++|+|||.+..
T Consensus       137 e~~-~~~L~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl---l~~~~~~kl~DFG~a~~  206 (311)
T 3p1a_A          137 ELC-GPSLQQHCEAWGASLPEAQVWGYLRDTLLALAHLHSQGLVHLDVKPANIF---LGPRGRCKLGDFGLLVE  206 (311)
T ss_dssp             ECC-CCBHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECGGGCEEECCCTTCEE
T ss_pred             ecc-CCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEE---ECCCCCEEEccceeeee
Confidence            999 6699998887543  4556667788888888874      6899999999   88889999999998763

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=99.88  E-value=6.9e-23  Score=149.82  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=111.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----   83 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.||+|.+...  .......+.+|+.+++.++||||+++++++...+     
T Consensus        23 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~  102 (367)
T 1cm8_A           23 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF  102 (367)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             ecceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccC
Confidence            357899999999999999999995 57999999987543  2234567889999999999999999999997653     


Q ss_pred             -cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 -VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 -~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       ..|+|+||+ +++|.+++..........+..+.+++.++.++      |+|+|++||+   +..+..++|+|||+++.
T Consensus       103 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~kl~Dfg~a~~  177 (367)
T 1cm8_A          103 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA---VNEDCELKILDFGLARQ  177 (367)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEecC-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEE---EcCCCCEEEEeeecccc
Confidence             359999999 77999999876556666677788888888874      6899999999   88888999999999874

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=99.88  E-value=2.2e-22  Score=143.36  Aligned_cols=141  Identities=20%  Similarity=0.276  Sum_probs=121.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..+.|.+.+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++|+
T Consensus        20 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   99 (303)
T 3a7i_A           20 PEELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKDTKLWIIM   99 (303)
T ss_dssp             GGGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             hHHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCCeEEEEE
Confidence            346789999999999999999984 578999999876543 345678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++..........+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus       100 e~~~~~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~Dfg~~~~  168 (303)
T 3a7i_A          100 EYLGGGSALDLLEPGPLDETQIATILREILKGLDYLHSEKKIHRDIKAANVL---LSEHGEVKLADFGVAGQ  168 (303)
T ss_dssp             ECCTTEEHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EeCCCCcHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCChheEE---ECCCCCEEEeeccccee
Confidence            99999999999986555666667777888888877      46899999999   78888999999998863

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=99.88  E-value=1.8e-22  Score=142.41  Aligned_cols=140  Identities=18%  Similarity=0.198  Sum_probs=117.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      -.++|.+.+.||+|+||.||++.. .+++.+|+|.+...  .....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~v   83 (284)
T 3kk8_A            4 FSDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQEESFHYLV   83 (284)
T ss_dssp             TTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEcCCEEEEE
Confidence            457899999999999999999985 56899999987543  334456788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc---CCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG---LAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~---~~~~l~df~~~~  154 (167)
                      +||+++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+   ..++++|||.+.
T Consensus        84 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~~~~kl~Dfg~~~  156 (284)
T 3kk8_A           84 FDLVTGGELFEDIVAREFYSEADASHCIQQILESIAYCHSNGIVHRNLKPENLL---LASKAKGAAVKLADFGLAI  156 (284)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ESSSSTTCCEEECCCTTCE
T ss_pred             EecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEE---EecCCCCCcEEEeeceeeE
Confidence            999999999988887653 555666677888888877      46899999999   5443   448999999985

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.88  E-value=1.7e-22  Score=145.47  Aligned_cols=139  Identities=24%  Similarity=0.391  Sum_probs=114.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEE--EEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIV--AVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~--avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|.+.+.||+|+||.||++.. .++..+  ++|.+... .....+.+.+|+.+++.+ +||||+++++++.+.+..++
T Consensus        24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~~~~~l  103 (327)
T 1fvr_A           24 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL  103 (327)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeCCceEE
Confidence            46899999999999999999984 466654  88877543 233456788999999999 89999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           88 VYEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                      ++||+++++|.+++....                 ......+..+.+++.++.+      +|+|+++.||+   +..+..
T Consensus       104 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl---~~~~~~  180 (327)
T 1fvr_A          104 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL---VGENYV  180 (327)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECGGGC
T ss_pred             EEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEE---EcCCCe
Confidence            999999999999998653                 2445566677788888877      47899999999   788889


Q ss_pred             ccccccchhh
Q 040049          145 PKRKKFEEEK  154 (167)
Q Consensus       145 ~~l~df~~~~  154 (167)
                      ++|+|||.++
T Consensus       181 ~kL~Dfg~~~  190 (327)
T 1fvr_A          181 AKIADFGLSR  190 (327)
T ss_dssp             EEECCTTCEE
T ss_pred             EEEcccCcCc
Confidence            9999999886

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=99.88  E-value=7.9e-23  Score=144.07  Aligned_cols=140  Identities=21%  Similarity=0.252  Sum_probs=118.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   86 (279)
T 3fdn_A            7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYL   86 (279)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEE
T ss_pred             ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecCCEEEE
Confidence            467899999999999999999985 46789999987432   12334678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+.
T Consensus        87 v~e~~~~~~l~~~l~~~~~~~~~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nil---i~~~~~~~l~Dfg~~~  157 (279)
T 3fdn_A           87 ILEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLL---LGSAGELKIADFGWSV  157 (279)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEE---ECTTSCEEECSCCEES
T ss_pred             EEecCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecccCChHhEE---EcCCCCEEEEeccccc
Confidence            9999999999999987543 555666677788888877      46899999999   7888899999999875

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=99.88  E-value=2.3e-22  Score=141.79  Aligned_cols=140  Identities=24%  Similarity=0.224  Sum_probs=117.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC------cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG------KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~------~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+....      ....+.+.+|+.+++.++||||+++++++...+..
T Consensus         4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~   83 (283)
T 3bhy_A            4 EDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDV   83 (283)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             hhhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecCCCeE
Confidence            46799999999999999999995 478999999875432      12467889999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC----Cccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL----APKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~----~~~l~df~~~~  154 (167)
                      ++++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+.    .++++|||.+.
T Consensus        84 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~~~~~kl~dfg~~~  160 (283)
T 3bhy_A           84 VLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIM---LLDKNVPNPRIKLIDFGIAH  160 (283)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEeecCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEE---EecCCCCCCceEEEecccce
Confidence            999999999999999986543 5556667778888888774      6899999999   65554    78999999886


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       161 ~  161 (283)
T 3bhy_A          161 K  161 (283)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.88  E-value=6.2e-23  Score=147.95  Aligned_cols=144  Identities=22%  Similarity=0.317  Sum_probs=118.1

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeC-CC-----cEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLA-DE-----RIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~-~~-----~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      +....++|.+.+.||+|+||.||++... ++     ..+|+|.+.... ....+.+.+|+.+++.+ +||||+++++++.
T Consensus        41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~  120 (333)
T 2i1m_A           41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT  120 (333)
T ss_dssp             GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence            4445678999999999999999999853 33     479999876543 33456789999999999 8999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcC---------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQN---------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL  139 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~---------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~  139 (167)
                      ..+..++|+||+++|+|.+++....               ......+..+.+++.++.+      +|+|+++.||+   +
T Consensus       121 ~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl---~  197 (333)
T 2i1m_A          121 HGGPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVL---L  197 (333)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCE---E
T ss_pred             cCCceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEE---E
Confidence            9999999999999999999998642               1334455567778888877      47899999999   7


Q ss_pred             hccCCccccccchhhh
Q 040049          140 LKGLAPKRKKFEEEKW  155 (167)
Q Consensus       140 ~~~~~~~l~df~~~~~  155 (167)
                      ..+..++|+|||.++.
T Consensus       198 ~~~~~~kl~Dfg~~~~  213 (333)
T 2i1m_A          198 TNGHVAKIGDFGLARD  213 (333)
T ss_dssp             EGGGEEEBCCCGGGCC
T ss_pred             CCCCeEEECccccccc
Confidence            8888999999999873

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=99.88  E-value=1.3e-22  Score=147.07  Aligned_cols=137  Identities=18%  Similarity=0.156  Sum_probs=112.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.+|+|.+......    ..+|+.++..+ +||||+++++++.+.+..|+||
T Consensus        20 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~----~~~E~~~l~~~~~hp~iv~~~~~~~~~~~~~lv~   95 (342)
T 2qr7_A           20 FTDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKRD----PTEEIEILLRYGQHPNIITLKDVYDDGKYVYVVT   95 (342)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTCC----CHHHHHHHHHHTTSTTBCCEEEEEECSSEEEEEE
T ss_pred             ccccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccCC----hHHHHHHHHHhcCCCCcCeEEEEEEcCCEEEEEE
Confidence            356799999999999999999995 57899999998654332    23577777776 7999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc----CCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG----LAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~----~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+|++||+   +...    ..++++|||+++.
T Consensus        96 E~~~gg~L~~~i~~~~~~~~~~~~~~~~qi~~al~~lH~~givHrDlkp~NIl---~~~~~~~~~~~kl~Dfg~a~~  169 (342)
T 2qr7_A           96 ELMKGGELLDKILRQKFFSEREASAVLFTITKTVEYLHAQGVVHRDLKPSNIL---YVDESGNPESIRICDFGFAKQ  169 (342)
T ss_dssp             CCCCSCBHHHHHHTCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ESSSSCSGGGEEECCCTTCEE
T ss_pred             eCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcEeccCCHHHEE---EecCCCCcCeEEEEECCCccc
Confidence            99999999999987643 555666777888888877      47899999998   4332    3489999999873

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=99.88  E-value=2.1e-22  Score=142.97  Aligned_cols=142  Identities=20%  Similarity=0.225  Sum_probs=119.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---------ccHHHHHHHHHHHhcCC-CCceeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---------GKLDEFINKVVILSQIN-YRNVVKLLGCC   79 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---------~~~~~~~~e~~~~~~l~-h~~i~~l~~~~   79 (167)
                      .-.++|.+.+.||+|+||.||++.. .+++.+|+|.+.....         ...+.+.+|+.+++.+. ||||+++++++
T Consensus        14 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~   93 (298)
T 1phk_A           14 GFYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTY   93 (298)
T ss_dssp             -CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEE
T ss_pred             chhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeee
Confidence            3457899999999999999999995 5789999998765431         22456789999999995 99999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ...+..++|+||+++++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.
T Consensus        94 ~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~dfg~  170 (298)
T 1phk_A           94 ETNTFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENIL---LDDDMNIKLTDFGF  170 (298)
T ss_dssp             ECSSEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTT
T ss_pred             ccCCeEEEEEeccCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEE---EcCCCcEEEecccc
Confidence            999999999999999999999987543 556667778888888877      47899999999   78888999999998


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      +..
T Consensus       171 ~~~  173 (298)
T 1phk_A          171 SCQ  173 (298)
T ss_dssp             CEE
T ss_pred             hhh
Confidence            863

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=99.88  E-value=3.5e-23  Score=149.68  Aligned_cols=141  Identities=21%  Similarity=0.213  Sum_probs=118.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--------ccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--------GKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....        .....+.+|+.+++.++||||+++++++.+.
T Consensus        22 ~~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~~  101 (335)
T 3dls_A           22 YSQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFENQ  101 (335)
T ss_dssp             HHHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEECS
T ss_pred             cccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEeeC
Confidence            356899999999999999999984 5789999998765421        1233567899999999999999999999999


Q ss_pred             CcceEEEecCCCC-CHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNG-NLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g-~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +..++++||+.+| +|.+++..... .....+..+.+++.++.++      |+|+|+.||+   +..+..++|+|||.++
T Consensus       102 ~~~~lv~e~~~~g~~l~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~kL~Dfg~a~  178 (335)
T 3dls_A          102 GFFQLVMEKHGSGLDLFAFIDRHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIV---IAEDFTIKLIDFGSAA  178 (335)
T ss_dssp             SEEEEEEECCTTSCBHHHHHHTCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTSCEEECCCTTCE
T ss_pred             CEEEEEEEeCCCCccHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEE---EcCCCcEEEeecccce
Confidence            9999999998776 99999987643 5566667788888888874      6899999999   8888899999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       179 ~  179 (335)
T 3dls_A          179 Y  179 (335)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.88  E-value=2.9e-22  Score=143.14  Aligned_cols=142  Identities=17%  Similarity=0.229  Sum_probs=113.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ...++|.+.+.||+|+||.||++.. .++..+|+|.+...   .......+.+|+.+++.++||||+++++++...+..+
T Consensus        29 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~  108 (310)
T 2wqm_A           29 NTLANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIEDNELN  108 (310)
T ss_dssp             SSGGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEE
T ss_pred             ccccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCcEE
Confidence            3457899999999999999999984 57899999987643   2344567889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++++|.+++....     ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       109 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl---~~~~~~~kl~Dfg~~~~  185 (310)
T 2wqm_A          109 IVLELADAGDLSRMIKHFKKQKRLIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVF---ITATGVVKLGDLGLGRF  185 (310)
T ss_dssp             EEEECCCSCBHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCC-----
T ss_pred             EEEecCCCCCHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEE---EcCCCCEEEEeccceee
Confidence            9999999999999987521     2445566677888888877      46899999999   78888999999999874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=99.88  E-value=1.4e-22  Score=145.89  Aligned_cols=130  Identities=17%  Similarity=0.177  Sum_probs=109.4

Q ss_pred             ceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           20 IVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      +.||+|+||.||++.. .+++.+|+|.+..   .....+.+|+..+..+. ||||+++++++.+.+..++|+||+++|+|
T Consensus        17 ~~lG~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~e~~~l~~l~~h~niv~~~~~~~~~~~~~lv~e~~~~~~L   93 (325)
T 3kn6_A           17 KPLGEGSFSICRKCVHKKSNQAFAVKIISK---RMEANTQKEITALKLCEGHPNIVKLHEVFHDQLHTFLVMELLNGGEL   93 (325)
T ss_dssp             CCSEEETTEEEEEEEETTTCCEEEEEEEEG---GGHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEECCCCSCBH
T ss_pred             CccccCCCeEEEEEEECCCCCEEEEEEECh---hhhhhHHHHHHHHHHhcCCCCeeEEEEEEEcCCEEEEEEEccCCCcH
Confidence            7899999999999995 5789999998853   23467788999999997 99999999999999999999999999999


Q ss_pred             HHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc---CCccccccchhhh
Q 040049           98 SDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG---LAPKRKKFEEEKW  155 (167)
Q Consensus        98 ~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~---~~~~l~df~~~~~  155 (167)
                      .+.+..... .....+..+.+++.++.+      +|+|++++||+   +..+   ..++|+|||+++.
T Consensus        94 ~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~kl~Dfg~a~~  158 (325)
T 3kn6_A           94 FERIKKKKHFSETEASYIMRKLVSAVSHMHDVGVVHRDLKPENLL---FTDENDNLEIKIIDFGFARL  158 (325)
T ss_dssp             HHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---EEC----CEEEECCCTTCEE
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCCeecCCCHHHEE---EecCCCcccEEEecccccee
Confidence            999987653 555666777888888877      46899999999   5443   3789999999873

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=99.88  E-value=1.1e-22  Score=152.78  Aligned_cols=138  Identities=20%  Similarity=0.223  Sum_probs=112.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE------   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~------   83 (167)
                      .++|.+.+.||+|+||.||++.. .+++.||+|.+...  .......+.+|+.+++.++||||+++++++...+      
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~  140 (464)
T 3ttj_A           61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ  140 (464)
T ss_dssp             ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence            47899999999999999999984 57899999987643  3344567889999999999999999999996654      


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..|+|+||+++ +|.+.+... ......+..+.+++.++.|      +|+|+|++||+   +..+..++|+|||+++.
T Consensus       141 ~~~lv~E~~~~-~l~~~~~~~-l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIl---l~~~~~~kl~DFG~a~~  213 (464)
T 3ttj_A          141 DVYLVMELMDA-NLCQVIQME-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  213 (464)
T ss_dssp             EEEEEEECCSE-EHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCCCCC--
T ss_pred             eEEEEEeCCCC-CHHHHHhhc-CCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEE---EeCCCCEEEEEEEeeee
Confidence            46999999976 677776643 3455566677888888887      57899999999   88889999999999874

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=99.88  E-value=8.8e-23  Score=148.29  Aligned_cols=139  Identities=24%  Similarity=0.303  Sum_probs=115.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .+.|...+.||+|+||.||++.. .+++.||+|.+.....   ...+.+.+|+.+++.++||||+++++++.+.+..++|
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~lv  132 (348)
T 1u5q_A           53 EKLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLV  132 (348)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEECCeEEEE
Confidence            35588899999999999999994 6789999998764432   2345688999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||++ |+|.+.+....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       133 ~e~~~-g~l~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kL~DfG~a~~  203 (348)
T 1u5q_A          133 MEYCL-GSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL---LSEPGLVKLGDFGSASI  203 (348)
T ss_dssp             EECCS-EEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE---EETTTEEEECCCTTCBS
T ss_pred             EecCC-CCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE---ECCCCCEEEeeccCcee
Confidence            99997 48888886443  2445566667788888877      57899999999   78888999999999864

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=99.88  E-value=9.6e-23  Score=144.91  Aligned_cols=145  Identities=17%  Similarity=0.244  Sum_probs=103.8

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ......++|.+.+.||+|+||.||++. ..+++.+|+|.+.... ....+.+.+|+..+..++||||+++++++...+..
T Consensus         9 p~~i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~   88 (303)
T 2vwi_A            9 PWSINRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVKDEL   88 (303)
T ss_dssp             ----CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESSSCE
T ss_pred             ccccchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeecCCc
Confidence            344567899999999999999999998 4578999999876432 33456688999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhc---------CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcccccc
Q 040049           86 LLVYEYIPNGNLSDYLHEQ---------NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~---------~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      ++++||+++++|.+++...         .......+..+.+++.++.+      +|+|+++.||+   +..+..++++||
T Consensus        89 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~df  165 (303)
T 2vwi_A           89 WLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNIL---LGEDGSVQIADF  165 (303)
T ss_dssp             EEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE---ECTTCCEEECCC
T ss_pred             EEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEE---EcCCCCEEEEec
Confidence            9999999999999999741         12445566667788888877      46899999999   788889999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.+..
T Consensus       166 g~~~~  170 (303)
T 2vwi_A          166 GVSAF  170 (303)
T ss_dssp             HHHHH
T ss_pred             cchhe
Confidence            98863

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=99.88  E-value=7.9e-23  Score=151.90  Aligned_cols=143  Identities=16%  Similarity=0.137  Sum_probs=112.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--------cccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--------KGKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--------~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ..++|.+.+.||+|+||.||+|.. .+++.+|+|.+....        ......+.+|+.+++.++||||+++++++.. 
T Consensus       133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~-  211 (419)
T 3i6u_A          133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-  211 (419)
T ss_dssp             HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred             hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence            467899999999999999999984 578999999875421        1112247899999999999999999999854 


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +..++||||+++|+|.+.+..... .....+..+.+++.++.+      +|+|+|++||++..-..+..++|+|||+++.
T Consensus       212 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~  291 (419)
T 3i6u_A          212 EDYYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKI  291 (419)
T ss_dssp             SEEEEEEECCTTCBGGGGTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTS
T ss_pred             CceEEEEEcCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeeccccee
Confidence            457899999999999998876543 455666677888888887      4799999999922112344589999999974

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.88  E-value=3.6e-22  Score=141.46  Aligned_cols=137  Identities=17%  Similarity=0.114  Sum_probs=113.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....   ...+.+.+|+..+..++||||+++++++...+..|+
T Consensus        29 ~~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~~~~~l  108 (286)
T 3uqc_A           29 ANGRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTRAGGLV  108 (286)
T ss_dssp             TTTTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEE
T ss_pred             ecCcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEECCcEEE
Confidence            346799999999999999999995 4689999999875433   234678999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ||||++|++|.++++... ........+.+++.++.+      +|+|+|++||+   +..+..+++++++.
T Consensus       109 v~e~~~g~~L~~~l~~~~-~~~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIl---l~~~g~~kl~~~~~  175 (286)
T 3uqc_A          109 VAEWIRGGSLQEVADTSP-SPVGAIRAMQSLAAAADAAHRAGVALSIDHPSRVR---VSIDGDVVLAYPAT  175 (286)
T ss_dssp             EEECCCEEEHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE---EETTSCEEECSCCC
T ss_pred             EEEecCCCCHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHCCCccCCCCcccEE---EcCCCCEEEEeccc
Confidence            999999999999996543 333445557788888877      47899999999   78888888865554

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.88  E-value=1e-22  Score=146.83  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=114.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....  .+.+.+|+.+++.+ +||||+++++++...+..++|+
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~~~~~lv~   84 (330)
T 2izr_A            7 VGPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKSR--APQLHLEYRFYKQLGSGDGIPQVYYFGPCGKYNAMVL   84 (330)
T ss_dssp             ETTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTCS--SCCHHHHHHHHHHHCSCTTSCCEEEEEEETTEEEEEE
T ss_pred             EcCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEeccccc--hHHHHHHHHHHHHhhCCCCCCEEEEEEecCCccEEEE
Confidence            357899999999999999999994 6789999998764322  24577899999999 8999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC-----ccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA-----PKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~-----~~l~df~~~~~  155 (167)
                      ||+ +++|.+++....  ......+..+.+++.++.+      +|+|+|++||+   +..+..     ++|+|||.++.
T Consensus        85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nil---l~~~~~~~~~~~kl~DFg~a~~  159 (330)
T 2izr_A           85 ELL-GPSLEDLFDLCDRTFSLKTVLMIAIQLISRMEYVHSKNLIYRDVKPENFL---IGRPGNKTQQVIHIIDFALAKE  159 (330)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECCGGGTCTTSEEECCCTTCEE
T ss_pred             EeC-CCCHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHee---eccCCCCCCceEEEEEccccee
Confidence            999 889999998642  3555666677888888877      46899999999   666555     89999999873

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=1.5e-22  Score=146.81  Aligned_cols=143  Identities=20%  Similarity=0.238  Sum_probs=111.1

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc-----cHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG-----KLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~-----~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      +....++|.+.+.||+|+||.||++.. .+++.+|+|.+......     ..+.+.+|+.+++.++||||+++++++...
T Consensus         5 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~   84 (346)
T 1ua2_A            5 VKSRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHK   84 (346)
T ss_dssp             --------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCT
T ss_pred             hHHHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEeeC
Confidence            344568899999999999999999995 57899999987643221     124678999999999999999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +..++|+||+++ +|.+.+.....  .....+..+.+++.++.+      +|+|++++||+   +..+..++|+|||.++
T Consensus        85 ~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil---~~~~~~~kl~Dfg~a~  160 (346)
T 1ua2_A           85 SNISLVFDFMET-DLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLL---LDENGVLKLADFGLAK  160 (346)
T ss_dssp             TCCEEEEECCSE-EHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECCCGGGS
T ss_pred             CceEEEEEcCCC-CHHHHHHhcCcCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEE---EcCCCCEEEEecccce
Confidence            999999999986 89888886542  445566677888888877      57899999999   7888899999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       161 ~  161 (346)
T 1ua2_A          161 S  161 (346)
T ss_dssp             T
T ss_pred             e
Confidence            4

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=144.59  Aligned_cols=140  Identities=20%  Similarity=0.241  Sum_probs=112.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeee----------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL----------   80 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~----------   80 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+.+++.++||||+++++++.          
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~   88 (320)
T 2i6l_A            9 LGSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDV   88 (320)
T ss_dssp             ETTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC--
T ss_pred             cCCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEecccccccccccc
Confidence            357899999999999999999995 468999999887666666778899999999999999999999873          


Q ss_pred             ----cCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh-ccCCccccc
Q 040049           81 ----ETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL-KGLAPKRKK  149 (167)
Q Consensus        81 ----~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~-~~~~~~l~d  149 (167)
                          ..+..++++||++ |+|.+++.+........+..+.+++.++.+      +|+|+++.||+   +. .+..++++|
T Consensus        89 ~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~kl~D  164 (320)
T 2i6l_A           89 GSLTELNSVYIVQEYME-TDLANVLEQGPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLF---INTEDLVLKIGD  164 (320)
T ss_dssp             --CCSCSEEEEEEECCS-EEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE---EETTTTEEEECC
T ss_pred             ccccccCceeEEeeccC-CCHHHHhhcCCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---EcCCCCeEEEcc
Confidence                3467899999997 599999987555666667778888888877      46899999998   64 456889999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.++.
T Consensus       165 fg~~~~  170 (320)
T 2i6l_A          165 FGLARI  170 (320)
T ss_dssp             CTTCBC
T ss_pred             Cccccc
Confidence            999874

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=99.87  E-value=3e-23  Score=152.17  Aligned_cols=139  Identities=13%  Similarity=0.072  Sum_probs=109.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccC---CCcccHHHHHHHH---HHHhcCCCCceeeee-------ee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKV---VGKGKLDEFINKV---VILSQINYRNVVKLL-------GC   78 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~---~~~~~~~~~~~e~---~~~~~l~h~~i~~l~-------~~   78 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+..   ......+.+.+|+   ..++.++||||++++       ++
T Consensus        72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~  151 (377)
T 3byv_A           72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  151 (377)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred             CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence            46789999999999999999994 6799999998763   2344567788999   555566899999998       55


Q ss_pred             eecCC-----------------cceEEEecCCCCCHHHHHhhcCc-c-------hHhhHHHHHHHHcCchh------hhh
Q 040049           79 CLETE-----------------VPLLVYEYIPNGNLSDYLHEQNE-D-------FVKDVGFILSRRGGIPR------LKR  127 (167)
Q Consensus        79 ~~~~~-----------------~~~lv~e~~~~g~L~~~i~~~~~-~-------~~~~~~~~~~i~~~l~~------~h~  127 (167)
                      +.+++                 ..+++|||+ +|+|.+++..... .       ....+..+.+++.++.+      +|+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHr  230 (377)
T 3byv_A          152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  230 (377)
T ss_dssp             EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecC
Confidence            55443                 278999999 5799999986432 1       13344567788888877      479


Q ss_pred             cccchhHHHHhhhccCCccccccchhhh
Q 040049          128 KKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|++||+   +..+..++|+|||+++.
T Consensus       231 Dikp~NIl---l~~~~~~kL~DFG~a~~  255 (377)
T 3byv_A          231 YLRPVDIV---LDQRGGVFLTGFEHLVR  255 (377)
T ss_dssp             CCCGGGEE---ECTTCCEEECCGGGCEE
T ss_pred             CCCHHHEE---EcCCCCEEEEechhhee
Confidence            99999999   88888999999999873

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.87  E-value=3.8e-22  Score=154.43  Aligned_cols=137  Identities=24%  Similarity=0.343  Sum_probs=112.7

Q ss_pred             CCcccc-eecccCceeEEEEEeC---CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           15 HLNVNI-VLGQGGQGTVHKGMLA---DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        15 ~~~~~~-~ig~g~~g~v~~~~~~---~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++.+.+ .||+|+||.||+|...   ++..||+|.++.. .....+.+.+|+.+++.++||||+++++++.. +..++||
T Consensus       336 ~~~~~~~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~-~~~~lv~  414 (613)
T 2ozo_A          336 NLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALMLVM  414 (613)
T ss_dssp             SEEEEEEEEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES-SSEEEEE
T ss_pred             ceeEcCcEEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc-CCeEEEE
Confidence            334444 7999999999999742   4567999988654 33466889999999999999999999999976 5689999


Q ss_pred             ecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+|+.||+   +..+..++|+|||+++.
T Consensus       415 E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~iiHrDlkp~NIL---l~~~~~vkL~DFGla~~  485 (613)
T 2ozo_A          415 EMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRNLAARNVL---LVNRHYAKISDFGLSKA  485 (613)
T ss_dssp             ECCTTCBHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECCCSTTTT
T ss_pred             EeCCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCEEcCcCCHHHEE---EcCCCcEEEeeccCccc
Confidence            99999999999976532  445566667888888887      47899999999   88888999999999974

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=5.1e-23  Score=149.87  Aligned_cols=140  Identities=18%  Similarity=0.122  Sum_probs=116.6

Q ss_pred             hcCCcccceecccCceeEEEEEe----CCCcEEEEEeccCCC----cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML----ADERIVAVKKSKVVG----KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETE   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~----~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~   83 (167)
                      .++|.+.+.||+|+||.||++..    .+++.+|+|.+....    ....+.+.+|+.++..+ +||||+++++++...+
T Consensus        53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~~  132 (355)
T 1vzo_A           53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  132 (355)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeCc
Confidence            36899999999999999999985    368999999875421    22334566788999998 6999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++||||+++|+|.+++..... .....+..+.+++.++.+      +|+|+|+.||+   +..+..++|+|||+++.
T Consensus       133 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~kl~DfG~a~~  208 (355)
T 1vzo_A          133 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL---LDSNGHVVLTDFGLSKE  208 (355)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEESCSSEEEE
T ss_pred             eEEEEeecCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---ECCCCcEEEeeCCCCee
Confidence            99999999999999999987543 445556667788888877      47899999999   88888999999998863

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=99.87  E-value=2.5e-22  Score=146.36  Aligned_cols=145  Identities=17%  Similarity=0.173  Sum_probs=117.9

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCc-----------ccHHHHHHHHHHHhcCCCCceee
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGK-----------GKLDEFINKVVILSQINYRNVVK   74 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~-----------~~~~~~~~e~~~~~~l~h~~i~~   74 (167)
                      .+++....++|.+.+.||+|+||.||++...++..+|+|.+.....           ...+.+.+|+.+++.++||||++
T Consensus        14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~   93 (362)
T 3pg1_A           14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNILG   93 (362)
T ss_dssp             HHHHHHTTCSCEEEEEEEEETTEEEEEEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBCC
T ss_pred             HHHHHHhccceEEeEEeccCCCEEEEEEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCccc
Confidence            4567778899999999999999999999977799999998744211           12367899999999999999999


Q ss_pred             eeeeeecC-----CcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc
Q 040049           75 LLGCCLET-----EVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK  141 (167)
Q Consensus        75 l~~~~~~~-----~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~  141 (167)
                      +++++...     ...++|+||++ |+|.+.+.....  .....+..+.+++.++.+      +|+|+++.||+   +..
T Consensus        94 ~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl---~~~  169 (362)
T 3pg1_A           94 LRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNIL---LAD  169 (362)
T ss_dssp             CSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECT
T ss_pred             eeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEE---EcC
Confidence            99998542     35799999997 488888886542  455666677888888877      47899999999   788


Q ss_pred             cCCccccccchhh
Q 040049          142 GLAPKRKKFEEEK  154 (167)
Q Consensus       142 ~~~~~l~df~~~~  154 (167)
                      +..++|+|||.++
T Consensus       170 ~~~~kl~Dfg~~~  182 (362)
T 3pg1_A          170 NNDITICDFNLAR  182 (362)
T ss_dssp             TCCEEECCTTC--
T ss_pred             CCCEEEEecCccc
Confidence            8899999999986

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=99.87  E-value=9.5e-23  Score=146.52  Aligned_cols=148  Identities=18%  Similarity=0.264  Sum_probs=120.7

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ++++++....++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ...+.+.+|+.+++.+ +||||+++++++..
T Consensus        14 ~~~~~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~   92 (326)
T 2x7f_A           14 IDLSALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIK   92 (326)
T ss_dssp             --CCCCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEE
T ss_pred             ccchhccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEee
Confidence            44556666778999999999999999999995 578999999876432 3446788999999998 79999999999976


Q ss_pred             ------CCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCcc
Q 040049           82 ------TEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        82 ------~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                            .+..++|+||+++++|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++
T Consensus        93 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl---~~~~~~~k  169 (326)
T 2x7f_A           93 KNPPGMDDQLWLVMEFCGAGSVTDLIKNTKGNTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVL---LTENAEVK  169 (326)
T ss_dssp             CC--CCCCEEEEEEECCTTEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE---ECTTCCEE
T ss_pred             ccCccccceEEEEEEcCCCCcHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEE---EcCCCCEE
Confidence                  457899999999999999998642   2444556667788888877      46899999999   78888999


Q ss_pred             ccccchhhh
Q 040049          147 RKKFEEEKW  155 (167)
Q Consensus       147 l~df~~~~~  155 (167)
                      |+|||.+..
T Consensus       170 l~Dfg~~~~  178 (326)
T 2x7f_A          170 LVDFGVSAQ  178 (326)
T ss_dssp             ECCCTTTC-
T ss_pred             EeeCcCcee
Confidence            999998874

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.87  E-value=2.5e-22  Score=144.70  Aligned_cols=140  Identities=22%  Similarity=0.361  Sum_probs=111.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..++|.+.+.||+|+||.||+|.+ .+++    ++++|.+... .......+.+|+.+++.++||||+++++++...+ .
T Consensus        13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~-~   91 (327)
T 3poz_A           13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V   91 (327)
T ss_dssp             CGGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEESSS-E
T ss_pred             CHHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecCC-e
Confidence            346799999999999999999984 3444    3577776433 3345678999999999999999999999997754 7


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++++++|+|.+++.....  .....+..+.+++.++.+      +|+|+|+.||+   +..+..++|+|||.++.
T Consensus        92 ~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl---l~~~~~~kl~Dfg~a~~  166 (327)
T 3poz_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVL---VKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEEECCTTCBHHHHHHHSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EEETTEEEECCTTHHHH
T ss_pred             EEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCChheEE---ECCCCCEEEccCcceeE
Confidence            789999999999999987543  445566677888888877      57899999999   88888999999999874

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=99.87  E-value=1.4e-22  Score=142.40  Aligned_cols=139  Identities=23%  Similarity=0.262  Sum_probs=118.7

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++...+..++++|
T Consensus         6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e   85 (276)
T 2yex_A            6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   85 (276)
T ss_dssp             HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcCCEEEEEEE
Confidence            46799999999999999999995 478999999875432 3345678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+.
T Consensus        86 ~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~dfg~~~  153 (276)
T 2yex_A           86 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL---LDERDNLKISDFGLAT  153 (276)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTTCE
T ss_pred             ecCCCcHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCChHHEE---EccCCCEEEeeCCCcc
Confidence            9999999998876532 4556667788888888774      7899999999   7888899999999886

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=99.87  E-value=4.2e-22  Score=141.19  Aligned_cols=138  Identities=19%  Similarity=0.228  Sum_probs=112.8

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      +|.....||+|+||.||++.. .++..+|+|.+........+.+.+|+.+++.++||||+++++++...+..++++||++
T Consensus        23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~~~  102 (295)
T 2clq_A           23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSENGFIKIFMEQVP  102 (295)
T ss_dssp             TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEECCS
T ss_pred             CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeCCcEEEEEEeCC
Confidence            344445899999999999994 5788999998876666666789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHhhcCc----chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049           94 NGNLSDYLHEQNE----DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus        94 ~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      +++|.+++.....    .....+..+.+++.++.+      +|+|+++.||+   +.. +..++++|||.++.
T Consensus       103 ~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~~kl~Dfg~~~~  172 (295)
T 2clq_A          103 GGSLSALLRSKWGPLKDNEQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVL---INTYSGVLKISDFGTSKR  172 (295)
T ss_dssp             EEEHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EETTTCCEEECCTTTCEE
T ss_pred             CCCHHHHHHhhccCCCccHHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEE---EECCCCCEEEeecccccc
Confidence            9999999987532    233445556788888877      46899999999   665 67899999998863

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=99.87  E-value=2.2e-22  Score=145.11  Aligned_cols=141  Identities=23%  Similarity=0.247  Sum_probs=116.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....  ...+.+.+|+.+++.++||||+++++++...+..++|
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv  102 (331)
T 4aaa_A           23 SMEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKKKRWYLV  102 (331)
T ss_dssp             CGGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEE
T ss_pred             hhhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecCCEEEEE
Confidence            346899999999999999999995 4689999998754432  2345578999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+++.... ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       103 ~e~~~~~~l~~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil---~~~~~~~kl~Dfg~~~~  173 (331)
T 4aaa_A          103 FEFVDHTILDDLELFPNGLDYQVVQKYLFQIINGIGFCHSHNIIHRDIKPENIL---VSQSGVVKLCDFGFART  173 (331)
T ss_dssp             EECCSEEHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCCTTC--
T ss_pred             EecCCcchHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCEEccCcChheEE---EcCCCcEEEEeCCCcee
Confidence            99999988887766443 3555666777888888877      57899999999   78888999999999863

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=3.3e-22  Score=144.41  Aligned_cols=140  Identities=25%  Similarity=0.380  Sum_probs=113.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC-C----CcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-D----ERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~----~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|.+.+.||+|+||.||+|... +    +..+|+|.+... .......+.+|+.++..++||||+++++++...+..+
T Consensus        43 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  122 (333)
T 1mqb_A           43 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM  122 (333)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             hHHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCCcE
Confidence            356778899999999999999843 2    245999987644 2334557889999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|+||+++|+|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       123 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl---~~~~~~~kl~Dfg~~~~  196 (333)
T 1mqb_A          123 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNIL---VNSNLVCKVSDFGLSRV  196 (333)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCCCC---
T ss_pred             EEEeCCCCCcHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChheEE---ECCCCcEEECCCCcchh
Confidence            9999999999999998653  2445566677788888877      47899999999   78888999999999874

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=99.87  E-value=2e-22  Score=142.37  Aligned_cols=140  Identities=18%  Similarity=0.235  Sum_probs=118.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+|+|.+...   .......+.+|+.+++.++||||+++++++.+.+..++
T Consensus        12 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~l   91 (284)
T 2vgo_A           12 TIDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHDRKRIYL   91 (284)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEE
T ss_pred             hhhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEcCCEEEE
Confidence            457899999999999999999985 46889999987532   22334678899999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+.
T Consensus        92 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~Dfg~~~  162 (284)
T 2vgo_A           92 MLEFAPRGELYKELQKHGRFDEQRSATFMEELADALHYCHERKVIHRDIKPENLL---MGYKGELKIADFGWSV  162 (284)
T ss_dssp             EECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEE---ECTTCCEEECCCTTCE
T ss_pred             EEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCHHHEE---EcCCCCEEEecccccc
Confidence            9999999999999987543 455666677788888877      46899999999   7788899999999875

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.87  E-value=1.1e-21  Score=141.81  Aligned_cols=138  Identities=20%  Similarity=0.241  Sum_probs=116.4

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhc--CCCCceeeeeeeeecCC----
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQ--INYRNVVKLLGCCLETE----   83 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~--l~h~~i~~l~~~~~~~~----   83 (167)
                      ....++|.+.+.||+|+||.||++.. +++.+|+|.+..   .....+.+|.+++..  ++||||+++++++...+    
T Consensus        38 ~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~---~~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~  113 (342)
T 1b6c_B           38 RTIARTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSS---REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWT  113 (342)
T ss_dssp             HHHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECG---GGHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCC
T ss_pred             ccccccEEEEeeecCCCCcEEEEEEE-cCccEEEEEeCc---hhHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccc
Confidence            34557899999999999999999987 588999998853   234667788888877  78999999999998775    


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhh--------------hcccchhHHHHhhhccCCccccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLK--------------RKKKKNKIWKQQLLKGLAPKRKK  149 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h--------------~~~~~~~~~~~~~~~~~~~~l~d  149 (167)
                      ..++++||+++|+|.+++..........+..+.+++.++.++|              +|+++.||+   +..+..++|+|
T Consensus       114 ~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIl---l~~~~~~kL~D  190 (342)
T 1b6c_B          114 QLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL---VKKNGTCCIAD  190 (342)
T ss_dssp             CEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEE---ECTTSCEEECC
T ss_pred             eeEEEEeecCCCcHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEE---ECCCCCEEEEE
Confidence            7899999999999999998766566677777788877776654              799999999   88888999999


Q ss_pred             cchhh
Q 040049          150 FEEEK  154 (167)
Q Consensus       150 f~~~~  154 (167)
                      ||.+.
T Consensus       191 fg~~~  195 (342)
T 1b6c_B          191 LGLAV  195 (342)
T ss_dssp             CTTCE
T ss_pred             CCCce
Confidence            99986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=99.87  E-value=3.5e-22  Score=146.00  Aligned_cols=142  Identities=19%  Similarity=0.235  Sum_probs=118.4

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--------ccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--------GKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--------~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      ...++|.+.+.||+|+||.||+|.. .+|+.||+|.+.....        ...+.+.+|+.++..+ +||||+++++++.
T Consensus        91 ~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~  170 (365)
T 2y7j_A           91 EFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDSYE  170 (365)
T ss_dssp             HHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred             hhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEEEe
Confidence            3446799999999999999999996 4799999998765431        1245678899999998 7999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ..+..++||||+++++|.+++..... .....+..+.+++.++.+      +|+|++++||+   +..+..++++|||.+
T Consensus       171 ~~~~~~lv~e~~~g~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl---~~~~~~ikl~DfG~~  247 (365)
T 2y7j_A          171 SSSFMFLVFDLMRKGELFDYLTEKVALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENIL---LDDNMQIRLSDFGFS  247 (365)
T ss_dssp             BSSEEEEEECCCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTTC
T ss_pred             eCCEEEEEEEeCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---ECCCCCEEEEecCcc
Confidence            99999999999999999999986543 555666677788888877      47899999999   888889999999987


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      ..
T Consensus       248 ~~  249 (365)
T 2y7j_A          248 CH  249 (365)
T ss_dssp             EE
T ss_pred             cc
Confidence            63

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=99.87  E-value=1.8e-22  Score=142.06  Aligned_cols=141  Identities=17%  Similarity=0.225  Sum_probs=115.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+...  .....+.+.+|+.+++.++||||+++++++..  .+..+
T Consensus         4 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~   83 (279)
T 2w5a_A            4 RAEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLY   83 (279)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEGGGTEEE
T ss_pred             chhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecCCCceEE
Confidence            457899999999999999999995 47899999987643  23445678999999999999999999998743  56789


Q ss_pred             EEEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCch-----------hhhhcccchhHHHHhhhccCCcccccc
Q 040049           87 LVYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIP-----------RLKRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~-----------~~h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                      +++||+++++|.+++....     ......+..+.+++.++.           .+|+|+++.||+   +..+..++++||
T Consensus        84 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl---~~~~~~~kl~df  160 (279)
T 2w5a_A           84 IVMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVF---LDGKQNVKLGDF  160 (279)
T ss_dssp             EEEECCTTEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEE---ECSSSCEEECCC
T ss_pred             EEEeCCCCCCHHHHHHhhcccCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEE---EcCCCCEEEecC
Confidence            9999999999999998642     244556666777777765           467899999999   788889999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       161 g~~~~  165 (279)
T 2w5a_A          161 GLARI  165 (279)
T ss_dssp             CHHHH
T ss_pred             chhee
Confidence            99874

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.87  E-value=2e-22  Score=142.87  Aligned_cols=145  Identities=26%  Similarity=0.341  Sum_probs=117.1

Q ss_pred             HHHHhhhcCCcccc-eecccCceeEEEEEe---CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeee
Q 040049            7 KELDKATDHLNVNI-VLGQGGQGTVHKGML---ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCL   80 (167)
Q Consensus         7 ~~~~~~~~~~~~~~-~ig~g~~g~v~~~~~---~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~   80 (167)
                      .++....++|.+.+ .||+|+||.||++..   .+++.+|+|.+....  ....+.+.+|+.+++.++||||+++++++ 
T Consensus         9 ~~~~~~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~-   87 (291)
T 1xbb_A            9 KEVYLDRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGIC-   87 (291)
T ss_dssp             --CBCCGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEE-
T ss_pred             ceeeecchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEE-
Confidence            44455667888888 999999999999953   346889999876542  23356789999999999999999999999 


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchh
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ..+..++++||+++++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+
T Consensus        88 ~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil---~~~~~~~kl~Dfg~~  164 (291)
T 1xbb_A           88 EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVL---LVTQHYAKISDFGLS  164 (291)
T ss_dssp             ESSSEEEEEECCTTEEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEETTEEEECCCTTC
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHhCCeEcCCCCcceEE---EeCCCcEEEccCCcc
Confidence            56778999999999999999987643 4555667778888888774      6899999999   888889999999988


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      ..
T Consensus       165 ~~  166 (291)
T 1xbb_A          165 KA  166 (291)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.87  E-value=2.1e-22  Score=143.01  Aligned_cols=139  Identities=26%  Similarity=0.323  Sum_probs=115.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec----------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE----------   81 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----------   81 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+.. .....+.+.+|+.+++.++||||+++++++..          
T Consensus         5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~   83 (303)
T 1zy4_A            5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRH-TEEKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA   83 (303)
T ss_dssp             HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEE-EHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred             cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEec-cHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence            46799999999999999999995 5789999998853 23345678899999999999999999998854          


Q ss_pred             ---CCcceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCcccccc
Q 040049           82 ---TEVPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKF  150 (167)
Q Consensus        82 ---~~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df  150 (167)
                         .+..++++||+++|+|.+++.....  .....+..+.+++.++.++      |+|+++.||+   +..+..++++||
T Consensus        84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil---~~~~~~~kl~df  160 (303)
T 1zy4_A           84 VKKKSTLFIQMEYCENGTLYDLIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIF---IDESRNVKIGDF  160 (303)
T ss_dssp             --CEEEEEEEEECCCSCBHHHHHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECCC
T ss_pred             cccCCceEEEEecCCCCCHHHhhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEE---EcCCCCEEEeeC
Confidence               3567899999999999999986543  3345566677888888774      6899999999   788889999999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.+..
T Consensus       161 g~~~~  165 (303)
T 1zy4_A          161 GLAKN  165 (303)
T ss_dssp             CCCSC
T ss_pred             cchhh
Confidence            98864

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.87  E-value=5.6e-22  Score=138.82  Aligned_cols=139  Identities=22%  Similarity=0.319  Sum_probs=114.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC--CcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET--EVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~--~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. ++..+|+|.+....  ....+.+.+|+.+++.++||||+++++++.+.  +..++
T Consensus         8 ~~~~y~~~~~lg~G~~g~V~~~~~-~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~l   86 (271)
T 3kmu_A            8 DFKQLNFLTKLNENHSGELWKGRW-QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSPPAPHPTL   86 (271)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEE-TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTTTSSSCEE
T ss_pred             CHHHhHHHHHhcCCCcceEEEEEE-CCeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccCCCCCeEe
Confidence            457899999999999999999997 48889999876543  33456789999999999999999999999877  77899


Q ss_pred             EEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+++|+|.+++.....   .....+..+.+++.++.+        +|+|+++.||+   +..+..++++||+++.
T Consensus        87 v~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil---~~~~~~~~l~~~~~~~  161 (271)
T 3kmu_A           87 ITHWMPYGSLYNVLHEGTNFVVDQSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVM---IDEDMTARISMADVKF  161 (271)
T ss_dssp             EEECCTTCBHHHHHHSCSSCCCCHHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEE---ECTTSCEEEEGGGSCC
T ss_pred             eecccCCCcHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEE---EcCCcceeEEecccee
Confidence            9999999999999987642   445566667777777765        56799999999   7778888888777653

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.87  E-value=4.5e-22  Score=143.20  Aligned_cols=141  Identities=21%  Similarity=0.311  Sum_probs=113.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++..      .++..+|+|.+... .......+.+|+.+++.++||||+++++++...+.
T Consensus        28 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~  107 (327)
T 2yfx_A           28 PRKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQSLP  107 (327)
T ss_dssp             CGGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             ChhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCCCC
Confidence            457899999999999999999973      24678999988643 33445678899999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcC--------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh---ccCCccc
Q 040049           85 PLLVYEYIPNGNLSDYLHEQN--------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL---KGLAPKR  147 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~--------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~---~~~~~~l  147 (167)
                      .++|+||+++++|.+++....        ......+..+.+++.++.+      +|+|+++.||+   +.   .+..+++
T Consensus       108 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIl---i~~~~~~~~~kl  184 (327)
T 2yfx_A          108 RFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCL---LTCPGPGRVAKI  184 (327)
T ss_dssp             CEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ESCSSTTCCEEE
T ss_pred             cEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEE---EecCCCcceEEE
Confidence            999999999999999998754        1233455667788888877      46899999999   65   4456899


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.++.
T Consensus       185 ~Dfg~~~~  192 (327)
T 2yfx_A          185 GDFGMARD  192 (327)
T ss_dssp             CCCHHHHH
T ss_pred             Cccccccc
Confidence            99999873

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=99.87  E-value=1.4e-22  Score=146.93  Aligned_cols=140  Identities=15%  Similarity=0.215  Sum_probs=116.6

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCC--CceeeeeeeeecCCcce
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINY--RNVVKLLGCCLETEVPL   86 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h--~~i~~l~~~~~~~~~~~   86 (167)
                      ...++|.+.+.||+|+||.||++...+++.+|+|.+...  .....+.+.+|+.++..++|  |||+++++++...+..+
T Consensus         6 ~~~~~y~i~~~lG~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~~~~~   85 (343)
T 3dbq_A            6 VKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIY   85 (343)
T ss_dssp             SSSCEEEEEEEESCCSSEEEEEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEE
T ss_pred             eecCEEEEEEEEecCCCeEEEEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeCCEEE
Confidence            456789999999999999999999778899999987644  23344678899999999976  99999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||| +.+++|.+++..... .....+..+.+++.++.+      +|+|+|+.||+   + .+..++|+|||+++.
T Consensus        86 lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIl---l-~~~~~kl~DFG~a~~  156 (343)
T 3dbq_A           86 MVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFL---I-VDGMLKLIDFGIANQ  156 (343)
T ss_dssp             EEEC-CCSEEHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---E-ETTEEEECCCSSSCC
T ss_pred             EEEe-CCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEE---E-ECCcEEEeecccccc
Confidence            9999 557799999987653 455566677888888877      57999999998   4 456789999999874

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=1.4e-21  Score=140.86  Aligned_cols=139  Identities=19%  Similarity=0.223  Sum_probs=113.0

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC--CCCceeeeeeeeecC----
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI--NYRNVVKLLGCCLET----   82 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l--~h~~i~~l~~~~~~~----   82 (167)
                      .....++|.+.+.||+|+||.||++.. +++.+|+|.+...   .......|.+++...  +||||+++++++...    
T Consensus        32 ~~~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~  107 (337)
T 3mdy_A           32 QRTIAKQIQMVKQIGKGRYGEVWMGKW-RGEKVAVKVFFTT---EEASWFRETEIYQTVLMRHENILGFIAADIKGTGSW  107 (337)
T ss_dssp             HTTHHHHCEEEEEEEEETTEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGG
T ss_pred             ccccccceEEEeEeecCCCeEEEEEEE-CCceEEEEEEecc---ccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCC
Confidence            344557899999999999999999986 4889999987532   234455566666554  899999999999876    


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh--------------hhhcccchhHHHHhhhccCCcccc
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR--------------LKRKKKKNKIWKQQLLKGLAPKRK  148 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~--------------~h~~~~~~~~~~~~~~~~~~~~l~  148 (167)
                      ...++|+||+++|+|.++++.........+..+.+++.++.+              +|+|+|+.||+   +..+..++|+
T Consensus       108 ~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nil---l~~~~~~kl~  184 (337)
T 3mdy_A          108 TQLYLITDYHENGSLYDYLKSTTLDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNIL---VKKNGTCCIA  184 (337)
T ss_dssp             CEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEE---ECTTSCEEEC
T ss_pred             CceEEEEeccCCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEE---ECCCCCEEEE
Confidence            678999999999999999987765666667777777777655              56899999999   7888899999


Q ss_pred             ccchhh
Q 040049          149 KFEEEK  154 (167)
Q Consensus       149 df~~~~  154 (167)
                      |||.++
T Consensus       185 Dfg~a~  190 (337)
T 3mdy_A          185 DLGLAV  190 (337)
T ss_dssp             CCTTCE
T ss_pred             eCCCce
Confidence            999985

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=99.87  E-value=4.1e-22  Score=146.79  Aligned_cols=137  Identities=15%  Similarity=0.227  Sum_probs=114.0

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCC--CCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQIN--YRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~--h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||++...+++.+|+|.+...  .....+.+.+|+.++..+.  ||||+++++++...+.+++||
T Consensus        56 ~~y~~~~~LG~G~fg~Vy~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~~~~~lv~  135 (390)
T 2zmd_A           56 RIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITDQYIYMVM  135 (390)
T ss_dssp             EEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEEE
T ss_pred             CceEEEEEEccCCCeEEEEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecCCEEEEEE
Confidence            459999999999999999999767899999987543  3344567899999999986  599999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      | +.+++|.+++..... .....+..+.+++.++.+      +|+|+|++||+   + .+..++|+|||+++.
T Consensus       136 E-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIl---l-~~~~~kl~DFG~a~~  203 (390)
T 2zmd_A          136 E-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFL---I-VDGMLKLIDFGIANQ  203 (390)
T ss_dssp             E-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEE---E-SSSCEEECCCSSSCC
T ss_pred             e-cCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEE---E-ECCeEEEEecCcccc
Confidence            9 567899999987653 444556667788888877      57999999998   4 457899999999874

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.87  E-value=8.6e-22  Score=139.22  Aligned_cols=138  Identities=29%  Similarity=0.452  Sum_probs=110.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc-------cHHHHHHHHHHHhcCCCCceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG-------KLDEFINKVVILSQINYRNVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~-------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+......       ..+.+.+|+.+++.++||||+++++++.+..
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~   96 (287)
T 4f0f_A           17 ADNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNPP   96 (287)
T ss_dssp             CSTTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTTT
T ss_pred             hhccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCCC
Confidence            457899999999999999999995 57899999987543321       1167889999999999999999999996554


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCch--------hhhhcccchhHHHHhhhccCC-----cccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIP--------RLKRKKKKNKIWKQQLLKGLA-----PKRK  148 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~--------~~h~~~~~~~~~~~~~~~~~~-----~~l~  148 (167)
                        ++++||+++|+|.+.+.....  .....+..+.+++.++.        .+|+|+++.||+   +..+..     ++++
T Consensus        97 --~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil---~~~~~~~~~~~~kl~  171 (287)
T 4f0f_A           97 --RMVMEFVPCGDLYHRLLDKAHPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIF---LQSLDENAPVCAKVA  171 (287)
T ss_dssp             --EEEEECCTTCBHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEE---ESCCCTTCSCCEEEC
T ss_pred             --eEEEEecCCCCHHHHHhcccCCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEE---EeccCCCCceeEEeC
Confidence              699999999999998876543  44555566667766664        578899999999   655444     8999


Q ss_pred             ccchhh
Q 040049          149 KFEEEK  154 (167)
Q Consensus       149 df~~~~  154 (167)
                      |||.++
T Consensus       172 Dfg~~~  177 (287)
T 4f0f_A          172 DFGLSQ  177 (287)
T ss_dssp             CCTTCB
T ss_pred             CCCccc
Confidence            999886

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.87  E-value=7.3e-22  Score=140.26  Aligned_cols=140  Identities=26%  Similarity=0.451  Sum_probs=112.9

Q ss_pred             hhcCCcccceecccCceeEEEEEeCC----CcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeee-cCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLAD----ERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCL-ETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~----~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~-~~~~~   85 (167)
                      ...+|.+.+.||+|+||.||+|....    ...+++|.+... .....+.+.+|+.+++.++||||+++++++. ..+..
T Consensus        23 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~  102 (298)
T 3f66_A           23 SSLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSP  102 (298)
T ss_dssp             GGEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCC
T ss_pred             cceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEcCCCce
Confidence            34578889999999999999998432    235788887643 3345567899999999999999999999864 45678


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++++||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++
T Consensus       103 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~ql~~~l~~lH~~~i~H~dikp~Nil---~~~~~~~kl~Dfg~a~  176 (298)
T 3f66_A          103 LVVLPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKYLASKKFVHRDLAARNCM---LDEKFTVKVADFGLAR  176 (298)
T ss_dssp             EEEEECCTTCBHHHHHHCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTTCCEEECSCGGGC
T ss_pred             EEEEeCCCCCCHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCchheEE---ECCCCCEEECcccccc
Confidence            999999999999999976443  344555666788888877      57899999999   7888899999999986

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=99.87  E-value=8.8e-23  Score=146.86  Aligned_cols=137  Identities=22%  Similarity=0.283  Sum_probs=112.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc-cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG-KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~-~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|+||.||++.. .+++.+|+|.+...... ....+.+|+.+++.++||||+++++++.+.+..++|+||
T Consensus         2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~lv~e~   81 (324)
T 3mtl_A            2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHTEKSLTLVFEY   81 (324)
T ss_dssp             CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEeeCCEEEEEecc
Confidence            5799999999999999999995 47899999987643221 112345789999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +++ +|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++
T Consensus        82 ~~~-~l~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl---~~~~~~~kl~Dfg~a~  148 (324)
T 3mtl_A           82 LDK-DLKQYLDDCGNIINMHNVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLL---INERGELKLADFGLAR  148 (324)
T ss_dssp             CSE-EHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEEESSCCGGGEE---ECTTCCEEECSSSEEE
T ss_pred             ccc-CHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCcCHHHEE---ECCCCCEEEccCcccc
Confidence            975 99998887543  444555667788888877      46899999999   8888899999999886

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.87  E-value=2.8e-22  Score=143.36  Aligned_cols=145  Identities=23%  Similarity=0.393  Sum_probs=112.1

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEe-C---CCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeec
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGML-A---DERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLE   81 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~---~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~   81 (167)
                      ++....++|.+.+.||+|+||.||+|.. .   ++..+|+|.+....  ....+.+.+|+.+++.++||||+++++++..
T Consensus        28 ~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~  107 (313)
T 3brb_A           28 DVVIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIE  107 (313)
T ss_dssp             TTBCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC
T ss_pred             hcccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEee
Confidence            3445567899999999999999999974 2   34589999876542  3345678999999999999999999999976


Q ss_pred             CC-----cceEEEecCCCCCHHHHHhhcC-------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC
Q 040049           82 TE-----VPLLVYEYIPNGNLSDYLHEQN-------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL  143 (167)
Q Consensus        82 ~~-----~~~lv~e~~~~g~L~~~i~~~~-------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~  143 (167)
                      .+     ..++++||+++|+|.+++....       ......+..+.+++.++.+      +|+|+++.||+   +..+.
T Consensus       108 ~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIl---i~~~~  184 (313)
T 3brb_A          108 MSSQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCM---LRDDM  184 (313)
T ss_dssp             -------CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEE---ECTTS
T ss_pred             ccccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEE---EcCCC
Confidence            54     3589999999999999985321       2445666677888888877      47899999999   78888


Q ss_pred             Cccccccchhhh
Q 040049          144 APKRKKFEEEKW  155 (167)
Q Consensus       144 ~~~l~df~~~~~  155 (167)
                      .++++|||.++.
T Consensus       185 ~~kl~Dfg~~~~  196 (313)
T 3brb_A          185 TVCVADFGLSKK  196 (313)
T ss_dssp             CEEECSCSCC--
T ss_pred             cEEEeecCccee
Confidence            999999999873

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=99.87  E-value=2.9e-22  Score=146.25  Aligned_cols=141  Identities=16%  Similarity=0.149  Sum_probs=118.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----C
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET-----E   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~   83 (167)
                      ...++|.+.+.||+|+||.||++.. .++..+|+|.+.... ......+.+|+.++..++||||+++++++...     .
T Consensus        24 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~  103 (364)
T 3qyz_A           24 DVGPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMK  103 (364)
T ss_dssp             CCTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCC
T ss_pred             cccccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccc
Confidence            3457899999999999999999985 578899999886433 33446788999999999999999999998655     3


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++++|++.+ +|.+++..........+..+.+++.++.+      +|+|++++||+   +..+..++|+|||.++.
T Consensus       104 ~~~iv~e~~~~-~L~~~l~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl---~~~~~~~kl~Dfg~a~~  177 (364)
T 3qyz_A          104 DVYIVQDLMET-DLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLL---LNTTCDLKICDFGLARV  177 (364)
T ss_dssp             CEEEEEECCSE-EHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             eEEEEEcccCc-CHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEE---ECCCCCEEEEeCcceEe
Confidence            58999999975 99999987665666777778888888887      47899999999   88888999999999873

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=99.87  E-value=3.9e-22  Score=143.27  Aligned_cols=140  Identities=18%  Similarity=0.155  Sum_probs=111.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc--------ccHHHHHHHHHHHhcCCCCceeeeeeeeecC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK--------GKLDEFINKVVILSQINYRNVVKLLGCCLET   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~--------~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~   82 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....        .....+.+|+.+++.++||||+++++++...
T Consensus         8 l~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~   87 (322)
T 2ycf_A            8 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDAE   87 (322)
T ss_dssp             HHHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEESS
T ss_pred             hhhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcCC
Confidence            456799999999999999999985 5789999998754321        1223578999999999999999999998765


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhcc---CCccccccch
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKG---LAPKRKKFEE  152 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~---~~~~l~df~~  152 (167)
                      + .++|+||+++++|.+.+..... .....+..+.+++.++.++      |+|+++.||+   +..+   ..++|+|||.
T Consensus        88 ~-~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl---~~~~~~~~~~kl~Dfg~  163 (322)
T 2ycf_A           88 D-YYIVLELMEGGELFDKVVGNKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVL---LSSQEEDCLIKITDFGH  163 (322)
T ss_dssp             S-EEEEEECCTTEETHHHHSTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESSSSSSCCEEECCCTT
T ss_pred             c-eEEEEecCCCCcHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEE---EecCCCCCeEEEccCcc
Confidence            5 8999999999999998876543 4555666778888888774      6899999999   5543   3489999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       164 ~~~  166 (322)
T 2ycf_A          164 SKI  166 (322)
T ss_dssp             CEE
T ss_pred             cee
Confidence            864

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.87  E-value=3.1e-22  Score=140.93  Aligned_cols=139  Identities=24%  Similarity=0.294  Sum_probs=112.5

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-CcceEEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET-EVPLLVY   89 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-~~~~lv~   89 (167)
                      ...++|.+.+.||+|+||.||++.. ++..+|+|.+...  ...+.+.+|+.+++.++||||+++++++... +..++++
T Consensus        18 ~~~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~lv~   94 (278)
T 1byg_A           18 LNMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVT   94 (278)
T ss_dssp             CCGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEE
T ss_pred             CChhhceEEeEEecCCCceEEEEEE-cCCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEcCCCceEEEE
Confidence            4567899999999999999999986 5889999988643  3457789999999999999999999987554 5789999


Q ss_pred             ecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++++|.+++.....   .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        95 e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~l~Dfg~~~~  166 (278)
T 1byg_A           95 EYMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVL---VSEDNVAKVSDFGLTKE  166 (278)
T ss_dssp             CCCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTTSCEEECCCCC---
T ss_pred             ecCCCCCHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHhCCccccCCCcceEE---EeCCCcEEEeecccccc
Confidence            99999999999986532   334455667788888877      47899999999   78888999999998874

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.87  E-value=4.6e-22  Score=145.78  Aligned_cols=138  Identities=26%  Similarity=0.440  Sum_probs=107.9

Q ss_pred             CCcccceecccCceeEEEEEeC--CC--cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCcceEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGMLA--DE--RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEVPLLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~~--~~--~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~~~lv   88 (167)
                      .|.+.+.||+|+||.||+|...  ++  ..+|+|.+... .....+.+.+|+.+++.++||||+++++++.. .+..++|
T Consensus        90 ~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~lv  169 (373)
T 3c1x_A           90 IVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVV  169 (373)
T ss_dssp             EEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCCSSCCEEE
T ss_pred             eeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcCCCCeEEE
Confidence            4667789999999999999842  22  45788887543 33456789999999999999999999998754 4678999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++|+|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||+++.
T Consensus       170 ~e~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIl---l~~~~~~kL~DFG~a~~  241 (373)
T 3c1x_A          170 LPYMKHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCM---LDEKFTVKVADFGLARD  241 (373)
T ss_dssp             EECCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCC-----
T ss_pred             EECCCCCCHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCCEecCccchheEE---ECCCCCEEEeecccccc
Confidence            999999999999986543  344455667788888877      47999999999   78888999999999873

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=99.87  E-value=6.2e-22  Score=141.60  Aligned_cols=138  Identities=26%  Similarity=0.330  Sum_probs=112.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+...  ...+.+.+|+.+++.++||||+++++++...+..++++|
T Consensus        27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~--~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~e  104 (314)
T 3com_A           27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVE--SDLQEIIKEISIMQQCDSPHVVKYYGSYFKNTDLWIVME  104 (314)
T ss_dssp             ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETT--SCCHHHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCch--HHHHHHHHHHHHHHhCCCCCCccEEEEEEeCCEEEEEee
Confidence            456899999999999999999985 46899999988643  234678899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           91 YIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+.
T Consensus       105 ~~~~~~L~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil---~~~~~~~kl~dfg~~~  173 (314)
T 3com_A          105 YCGAGSVSDIIRLRNKTLTEDEIATILQSTLKGLEYLHFMRKIHRDIKAGNIL---LNTEGHAKLADFGVAG  173 (314)
T ss_dssp             CCTTEEHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCCTTCE
T ss_pred             cCCCCCHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEE---ECCCCCEEEeecccch
Confidence            999999999987432  3555666777888888877      46899999999   7788899999999986

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=99.87  E-value=2.5e-22  Score=146.87  Aligned_cols=140  Identities=17%  Similarity=0.133  Sum_probs=104.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------   82 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.||+|.+...  .......+.+|+.+++.++||||+++++++...      
T Consensus        27 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~  106 (367)
T 2fst_X           27 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF  106 (367)
T ss_dssp             EETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGC
T ss_pred             CCCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccC
Confidence            347899999999999999999984 57899999988643  233456788999999999999999999998654      


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ...++++|++ +++|.+++..........+..+.+++.++.++      |+|+|+.||+   +..+..++|+|||+++.
T Consensus       107 ~~~~lv~e~~-~~~L~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIl---l~~~~~~kL~DFG~a~~  181 (367)
T 2fst_X          107 NDVYLVTHLM-GADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA---VNEDCELKILDFGLARH  181 (367)
T ss_dssp             CCCEEEEECC-CEECC-----CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECC------
T ss_pred             CeEEEEeccc-CCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEE---ECCCCCEEEeecccccc
Confidence            5579999998 67999988875556666777788888888874      6899999999   88888999999999874

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=9.3e-22  Score=139.14  Aligned_cols=140  Identities=24%  Similarity=0.339  Sum_probs=115.6

Q ss_pred             hhcCCcccc-eecccCceeEEEEEeC---CCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNI-VLGQGGQGTVHKGMLA---DERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~-~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+ .||+|+||.||++...   ++..+|+|.+.... ....+.+.+|+.+++.++||||+++++++ ..+..+
T Consensus         7 ~~~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~-~~~~~~   85 (287)
T 1u59_A            7 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVC-QAEALM   85 (287)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEE-ESSSEE
T ss_pred             cHHHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEe-cCCCcE
Confidence            456677776 8999999999999742   57889999887543 34567789999999999999999999999 556789


Q ss_pred             EEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus        86 lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~kl~Dfg~~~~  159 (287)
T 1u59_A           86 LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVL---LVNRHYAKISDFGLSKA  159 (287)
T ss_dssp             EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EEETTEEEECCCTTCEE
T ss_pred             EEEEeCCCCCHHHHHHhCCccCCHHHHHHHHHHHHHHHHHHHHCCEeeCCCchheEE---EcCCCCEEECcccceee
Confidence            9999999999999997543  2455666777888888877      46899999999   78888999999998863

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=99.86  E-value=1e-21  Score=139.03  Aligned_cols=140  Identities=19%  Similarity=0.213  Sum_probs=113.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~   85 (167)
                      .+.|.+.+.||+|+||.||++.. .++..+++|.+...  .....+.+.+|+.+++.++||||+++++++..    ....
T Consensus        25 ~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  104 (290)
T 1t4h_A           25 GRFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCI  104 (290)
T ss_dssp             SCEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEE
T ss_pred             ceeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccccCCCceE
Confidence            34578888999999999999985 57888999987543  34456678999999999999999999998865    3558


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCch--------hhhhcccchhHHHHhhh-ccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIP--------RLKRKKKKNKIWKQQLL-KGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~--------~~h~~~~~~~~~~~~~~-~~~~~~l~df~~~~~  155 (167)
                      ++|+||+++++|.+++..... .....+..+.+++.++.        .+|+|+++.||+   +. .+..++|+|||.+..
T Consensus       105 ~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil---~~~~~~~~kl~Dfg~~~~  181 (290)
T 1t4h_A          105 VLVTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIF---ITGPTGSVKIGDLGLATL  181 (290)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEE---ESSTTSCEEECCTTGGGG
T ss_pred             EEEEEecCCCCHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEE---EECCCCCEEEeeCCCccc
Confidence            999999999999999987543 45555666677777665        467899999998   65 677899999999863

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.86  E-value=9.1e-22  Score=139.21  Aligned_cols=141  Identities=21%  Similarity=0.216  Sum_probs=118.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+++|.+...  .....+.+.+|+.+++.++||||+++++++...+..+++
T Consensus        20 ~~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv   99 (287)
T 2wei_A           20 FAERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILEDSSSFYIV   99 (287)
T ss_dssp             HHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             HhhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeCCCeEEEE
Confidence            456899999999999999999995 47899999987543  344567899999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc---cCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK---GLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~---~~~~~l~df~~~~~  155 (167)
                      +|++++++|.+.+..... .....+..+.+++.++.+      +|+|+++.||+   +..   +..++++|||.+..
T Consensus       100 ~e~~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl---v~~~~~~~~~kL~Dfg~~~~  173 (287)
T 2wei_A          100 GELYTGGELFDEIIKRKRFSEHDAARIIKQVFSGITYMHKHNIVHRDLKPENIL---LESKEKDCDIKIIDFGLSTC  173 (287)
T ss_dssp             ECCCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ESCSSTTCCEEECSTTGGGT
T ss_pred             EEccCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCChhhEE---EecCCCcccEEEeccCccee
Confidence            999999999998876543 555666777888888877      46899999999   543   34689999998873

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.86  E-value=2.2e-22  Score=144.83  Aligned_cols=140  Identities=21%  Similarity=0.301  Sum_probs=112.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcE----EEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERI----VAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..++|.+.+.||+|+||.||+|.. .++..    +++|.+.... ......+.+|+.++..++||||+++++++. .+..
T Consensus        11 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~-~~~~   89 (325)
T 3kex_A           11 KETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCP-GSSL   89 (325)
T ss_dssp             CTTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEEC-BSSE
T ss_pred             CHhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEc-CCcc
Confidence            346899999999999999999984 44543    7777664332 233345678999999999999999999885 4568


Q ss_pred             eEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+||+++|+|.+.+....  ......+..+.+++.++.+      +|+|+|+.||+   +..+..++|+|||.++.
T Consensus        90 ~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil---~~~~~~~kl~Dfg~a~~  164 (325)
T 3kex_A           90 QLVTQYLPLGSLLDHVRQHRGALGPQLLLNWGVQIAKGMYYLEEHGMVHRNLAARNVL---LKSPSQVQVADFGVADL  164 (325)
T ss_dssp             EEEEECCTTCBSHHHHHSSGGGSCTTHHHHHHHHHHHHHHHHHHTTCCCSCCSSTTEE---ESSSSCEEECSCSGGGG
T ss_pred             EEEEEeCCCCCHHHHHHHccccCCHHHHHHHHHHHHHHHHHHHhCCCCCCccchheEE---ECCCCeEEECCCCcccc
Confidence            89999999999999998653  2445566667788888877      57899999999   78888999999999974

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=99.86  E-value=5.9e-22  Score=146.40  Aligned_cols=135  Identities=19%  Similarity=0.171  Sum_probs=108.7

Q ss_pred             hcCCccc-ceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHh-cCCCCceeeeeeeeec----CCcc
Q 040049           13 TDHLNVN-IVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILS-QINYRNVVKLLGCCLE----TEVP   85 (167)
Q Consensus        13 ~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~-~l~h~~i~~l~~~~~~----~~~~   85 (167)
                      .++|.+. +.||+|+||.||++.. .+++.+|+|.+...     ..+.+|+.++. ..+||||+++++++..    .+.+
T Consensus        60 ~~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~~-----~~~~~E~~~~~~~~~hp~iv~l~~~~~~~~~~~~~~  134 (400)
T 1nxk_A           60 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQDC-----PKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL  134 (400)
T ss_dssp             GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECS-----HHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             cccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCcc-----hhHHHHHHHHHHhcCCCCcceEeEEEeecccCCcEE
Confidence            4566666 6899999999999985 57899999988532     45667887764 4589999999999865    5678


Q ss_pred             eEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc---cCCccccccchh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK---GLAPKRKKFEEE  153 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~---~~~~~l~df~~~  153 (167)
                      ++||||+++|+|.+++....   ......+..+.+++.++.|+      |+|+|++||+   +..   +..++|+|||++
T Consensus       135 ~lv~E~~~gg~L~~~l~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nil---l~~~~~~~~~kl~DFG~a  211 (400)
T 1nxk_A          135 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL---YTSKRPNAILKLTDFGFA  211 (400)
T ss_dssp             EEEEECCCSEEHHHHHHCC---CCBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSSSTTCCEEECCCTTC
T ss_pred             EEEEEeCCCCcHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEE---EecCCCCccEEEEecccc
Confidence            99999999999999998753   24556667788888888874      6899999999   665   678999999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       212 ~~  213 (400)
T 1nxk_A          212 KE  213 (400)
T ss_dssp             EE
T ss_pred             cc
Confidence            74

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.86  E-value=1.3e-21  Score=138.83  Aligned_cols=137  Identities=19%  Similarity=0.306  Sum_probs=111.4

Q ss_pred             CCcccceecccCceeEEEEEe-CCC---cEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc-eEE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADE---RIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP-LLV   88 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~---~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~-~lv   88 (167)
                      .|...+.||+|+||.||+|.. .++   ..+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+.+.. +++
T Consensus        22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~v  101 (298)
T 3pls_A           22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPPEGLPHVL  101 (298)
T ss_dssp             EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCSSSCCEEE
T ss_pred             EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecCCCCcEEE
Confidence            455568999999999999983 333   368999876433 34457789999999999999999999999876655 899


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +||+.+|+|.+++.....  .....+..+.+++.++.+      +|+|++++||+   +..+..++++|||.++
T Consensus       102 ~e~~~~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil---i~~~~~~kl~Dfg~~~  172 (298)
T 3pls_A          102 LPYMCHGDLLQFIRSPQRNPTVKDLISFGLQVARGMEYLAEQKFVHRDLAARNCM---LDESFTVKVADFGLAR  172 (298)
T ss_dssp             ECCCTTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTTCCEEECCTTSSC
T ss_pred             EecccCCCHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEE---EcCCCcEEeCcCCCcc
Confidence            999999999999987432  444556667788888877      47899999999   7888899999999986

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=99.86  E-value=1.2e-21  Score=143.33  Aligned_cols=138  Identities=20%  Similarity=0.217  Sum_probs=112.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE------   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~------   83 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+...  .......+.+|+.+++.++||||+++++++...+      
T Consensus        24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~  103 (371)
T 2xrw_A           24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ  103 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred             hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence            47899999999999999999984 57899999987643  2334567889999999999999999999997654      


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++|+||+++ +|.+.+... ......+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||.++.
T Consensus       104 ~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl---~~~~~~~kl~Dfg~a~~  176 (371)
T 2xrw_A          104 DVYIVMELMDA-NLCQVIQME-LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLART  176 (371)
T ss_dssp             EEEEEEECCSE-EHHHHHHSC-CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECCCCC---
T ss_pred             ceEEEEEcCCC-CHHHHHhhc-cCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEE---EcCCCCEEEEEeecccc
Confidence            67999999975 788888643 3445566677888888877      47899999999   88888999999999874

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=138.56  Aligned_cols=136  Identities=28%  Similarity=0.399  Sum_probs=107.8

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..++|.+.+.||+|+||.||++.. .++.+|+|.+..  ....+.+.+|+.+++.++||||+++++++.  +..++|+||
T Consensus         6 ~~~~~~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~--~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~--~~~~lv~e~   80 (307)
T 2eva_A            6 DYKEIEVEEVVGRGAFGVVCKAKW-RAKDVAIKQIES--ESERKAFIVELRQLSRVNHPNIVKLYGACL--NPVCLVMEY   80 (307)
T ss_dssp             CGGGEEEEEEEECCSSSEEEEEEE-TTEEEEEEECSS--TTHHHHHHHHHHHHHHCCCTTBCCEEEBCT--TTTEEEEEC
T ss_pred             CHhHeeeeeEeecCCCceEEEEEE-CCeeEEEEEecC--hhHHHHHHHHHHHHhcCCCCCcCeEEEEEc--CCcEEEEEc
Confidence            356899999999999999999986 478899998863  344577899999999999999999999886  458999999


Q ss_pred             CCCCCHHHHHhhcCc----chHhhHHHHHHHHcCchh---------hhhcccchhHHHHhhhccCC-ccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE----DFVKDVGFILSRRGGIPR---------LKRKKKKNKIWKQQLLKGLA-PKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~----~~~~~~~~~~~i~~~l~~---------~h~~~~~~~~~~~~~~~~~~-~~l~df~~~~~  155 (167)
                      +++|+|.+++.....    .....+..+.+++.++.+         +|+|+++.||+   +..+.. ++++|||.+..
T Consensus        81 ~~~~~L~~~l~~~~~~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIl---l~~~~~~~kl~Dfg~~~~  155 (307)
T 2eva_A           81 AEGGSLYNVLHGAEPLPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLL---LVAGGTVLKICDFGTACD  155 (307)
T ss_dssp             CTTCBHHHHHHCSSSEECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEE---EETTTTEEEECCCCC---
T ss_pred             CCCCCHHHHHhccCCCCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEE---EeCCCCEEEEcccccccc
Confidence            999999999986543    233444555666666655         56799999999   666655 79999999863

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=99.86  E-value=1.5e-21  Score=140.42  Aligned_cols=136  Identities=15%  Similarity=0.199  Sum_probs=113.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeec--CCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLE--TEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~--~~~~~l   87 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+..   ...+.+.+|+.+++.++ ||||+++++++.+  ....++
T Consensus        34 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~~~~~~~l  110 (330)
T 3nsz_A           34 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  110 (330)
T ss_dssp             EGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCCEEE
T ss_pred             CCCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccCCCCceEE
Confidence            346899999999999999999984 5789999998863   33467889999999997 9999999999987  566899


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC-Cccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL-APKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~-~~~l~df~~~~~  155 (167)
                      ++||+++++|.+++..  ......+..+.+++.++.+      +|+|++++||+   +..+. .++|+|||.++.
T Consensus       111 v~e~~~~~~l~~~~~~--~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil---~~~~~~~~kl~Dfg~a~~  180 (330)
T 3nsz_A          111 VFEHVNNTDFKQLYQT--LTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM---IDHEHRKLRLIDWGLAEF  180 (330)
T ss_dssp             EEECCCCCCHHHHGGG--CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EETTTTEEEECCCTTCEE
T ss_pred             EEeccCchhHHHHHHh--CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEE---EcCCCCEEEEEeCCCceE
Confidence            9999999999998864  2344556667788888877      57899999999   66444 789999999873

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=99.86  E-value=7.2e-22  Score=145.10  Aligned_cols=139  Identities=19%  Similarity=0.190  Sum_probs=107.2

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET-----   82 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----   82 (167)
                      +....++|.+.+.||+|+||.||+|.. .+++.+|+|.+......    ..+|+.+++.++||||+++++++...     
T Consensus         2 l~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~~~----~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~   77 (383)
T 3eb0_A            2 LETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDPRY----KNRELDIMKVLDHVNIIKLVDYFYTTGDEEP   77 (383)
T ss_dssp             ----CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCTTS----CCHHHHHHTTCCCTTBCCEEEEEEEC-----
T ss_pred             CccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCcch----HHHHHHHHHHcCCCCccchhheeeecCcccc
Confidence            345678999999999999999999984 68999999987543221    23699999999999999999998443     


Q ss_pred             ---------------------------------CcceEEEecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh
Q 040049           83 ---------------------------------EVPLLVYEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR  124 (167)
Q Consensus        83 ---------------------------------~~~~lv~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~  124 (167)
                                                       .+.++||||+++ +|.+.+...     ..+....+..+.+++.++.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~  156 (383)
T 3eb0_A           78 KPPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGF  156 (383)
T ss_dssp             --------------------------------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                                             347899999985 888877642     22445566667788888877


Q ss_pred             ------hhhcccchhHHHHhhh-ccCCccccccchhhh
Q 040049          125 ------LKRKKKKNKIWKQQLL-KGLAPKRKKFEEEKW  155 (167)
Q Consensus       125 ------~h~~~~~~~~~~~~~~-~~~~~~l~df~~~~~  155 (167)
                            +|+|+|+.|++   +. .+..++|+|||.++.
T Consensus       157 LH~~gi~H~Dikp~Nil---~~~~~~~~kl~Dfg~a~~  191 (383)
T 3eb0_A          157 IHSLGICHRDIKPQNLL---VNSKDNTLKLCDFGSAKK  191 (383)
T ss_dssp             HHTTTEECSCCCGGGEE---EETTTTEEEECCCTTCEE
T ss_pred             HHHCcCccCccCHHHEE---EcCCCCcEEEEECCCCcc
Confidence                  47899999998   65 567899999999873

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=99.86  E-value=1.1e-21  Score=142.36  Aligned_cols=140  Identities=16%  Similarity=0.184  Sum_probs=117.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----Cc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLET-----EV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~~   84 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ......+.+|+.+++.++||||+++++++...     ..
T Consensus         9 i~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~   88 (353)
T 2b9h_A            9 ISSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNE   88 (353)
T ss_dssp             SCTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCC
T ss_pred             cccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccce
Confidence            467899999999999999999995 478999999886433 33445678999999999999999999987654     56


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+.+ +|.+.+..........+..+.+++.++.++      |+|+++.||+   +..+..++|+|||.++.
T Consensus        89 ~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil---~~~~~~~kl~Dfg~a~~  161 (353)
T 2b9h_A           89 VYIIQELMQT-DLHRVISTQMLSDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLL---INSNCDLKVCDFGLARI  161 (353)
T ss_dssp             EEEEECCCSE-EHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEEEEeccCc-cHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---EcCCCcEEEEecccccc
Confidence            8999999974 999999876556666777788888888774      7899999999   78888999999999873

>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...

Probab=99.86  E-value=1.4e-21  Score=138.74  Aligned_cols=139  Identities=20%  Similarity=0.277  Sum_probs=114.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++++++...+..++++
T Consensus         2 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~lv~   81 (299)
T 2r3i_A            2 MENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVF   81 (299)
T ss_dssp             CTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             cchhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecCCceEEEE
Confidence            36799999999999999999995 478999999875432  233467889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||++ ++|.+++....   ......+..+.+++.++.++      |+|++++||+   +..+..++++|||.+..
T Consensus        82 e~~~-~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil---i~~~~~~kl~dfg~~~~  152 (299)
T 2r3i_A           82 EFLH-QDLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL---INTEGAIKLADFGLARA  152 (299)
T ss_dssp             ECCS-EEHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECSTTHHHH
T ss_pred             Eccc-CCHHHHHHhhhccCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHeE---EcCCCCEEECcchhhhh
Confidence            9997 49999988653   24455566677888888774      6899999999   78888999999999874

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=99.86  E-value=1e-21  Score=142.56  Aligned_cols=139  Identities=19%  Similarity=0.235  Sum_probs=114.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET------   82 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------   82 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++++++...      
T Consensus        15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~   94 (351)
T 3mi9_A           15 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   94 (351)
T ss_dssp             BGGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC------
T ss_pred             cccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeecccccccc
Confidence            457899999999999999999995 578999999875432  23345778999999999999999999999764      


Q ss_pred             --CcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccch
Q 040049           83 --EVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        83 --~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                        +..++|+||+++ +|.+.+....  ......+..+.+++.++.++      |+|+|++||+   +..+..++|+|||.
T Consensus        95 ~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl---~~~~~~~kl~Dfg~  170 (351)
T 3mi9_A           95 CKGSIYLVFDFCEH-DLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVL---ITRDGVLKLADFGL  170 (351)
T ss_dssp             --CEEEEEEECCSE-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTT
T ss_pred             CCceEEEEEeccCC-CHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEE---EcCCCCEEEccchh
Confidence              458999999976 7888777653  24556666778888888774      6899999999   88888999999998


Q ss_pred             hh
Q 040049          153 EK  154 (167)
Q Consensus       153 ~~  154 (167)
                      ++
T Consensus       171 a~  172 (351)
T 3mi9_A          171 AR  172 (351)
T ss_dssp             CE
T ss_pred             cc
Confidence            86

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.86  E-value=1.4e-21  Score=151.83  Aligned_cols=132  Identities=25%  Similarity=0.331  Sum_probs=110.2

Q ss_pred             ceecccCceeEEEEEe---CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGML---ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~---~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||+|.+   .++..+|+|.++..  .....+.+.+|+.+++.++||||+++++++.. +..++||||+++
T Consensus       375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-~~~~lv~E~~~~  453 (635)
T 4fl3_A          375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL  453 (635)
T ss_dssp             EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec-CCEEEEEEccCC
Confidence            3799999999999963   34678999987653  33446789999999999999999999999864 557899999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|.+++..... .....+..+.+++.++.|      +|+|+|+.||+   +..+..++|+|||+++.
T Consensus       454 g~L~~~l~~~~~l~~~~~~~i~~qi~~~L~yLH~~~iiHrDLkp~NIL---l~~~~~~kL~DFGla~~  518 (635)
T 4fl3_A          454 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVL---LVTQHYAKISDFGLSKA  518 (635)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECCTTHHHH
T ss_pred             CCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHCCEeCCCCChHhEE---EeCCCCEEEEEcCCccc
Confidence            999999986543 455566677888888877      57999999999   88888999999999874

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.5e-21  Score=140.73  Aligned_cols=140  Identities=22%  Similarity=0.362  Sum_probs=112.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcE----EEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERI----VAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~----~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.    +++|.+... .......+.+|+.+++.++||||+++++++...+ .
T Consensus        13 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~   91 (327)
T 3lzb_A           13 KETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST-V   91 (327)
T ss_dssp             CTTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEESSS-E
T ss_pred             CHhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEecCC-c
Confidence            357899999999999999999984 45543    577765433 3456678999999999999999999999997654 7


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++++++|+|.+++.....  .....+..+.+++.++.+      +|+|+|++||+   +..+..++|+|||.++.
T Consensus        92 ~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl---~~~~~~~kL~DfG~a~~  166 (327)
T 3lzb_A           92 QLITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVL---VKTPQHVKITDFGLAKL  166 (327)
T ss_dssp             EEEECCCSSCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EEETTEEEECCTTC---
T ss_pred             eEEEEecCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhCCCcCCCCCHHHEE---EcCCCCEEEccCcceeE
Confidence            889999999999999987543  445566677888888877      57999999999   78888999999999874

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.86  E-value=5.6e-22  Score=139.79  Aligned_cols=137  Identities=20%  Similarity=0.295  Sum_probs=113.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec---------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE---------   81 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~---------   81 (167)
                      -.++|.+.+.||+|+||.||++.. .+++.+|+|.+....    +.+.+|+.+++.++||||+++++++..         
T Consensus         9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~   84 (284)
T 2a19_B            9 FGMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSS   84 (284)
T ss_dssp             HHHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC-----
T ss_pred             hccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCccccc
Confidence            346799999999999999999996 478999999886443    345689999999999999999998854         


Q ss_pred             -------CCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCc
Q 040049           82 -------TEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAP  145 (167)
Q Consensus        82 -------~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~  145 (167)
                             ....++++||+++++|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..+
T Consensus        85 ~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~  161 (284)
T 2a19_B           85 KNSSRSKTKCLFIQMEFCDKGTLEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIF---LVDTKQV  161 (284)
T ss_dssp             ----CCEEEEEEEEECCCCSCBHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEETTEE
T ss_pred             ccccccCcceEEEEEeccCCCCHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEE---EcCCCCE
Confidence                   345789999999999999997642   2445566677788888877      46899999999   7888899


Q ss_pred             cccccchhhh
Q 040049          146 KRKKFEEEKW  155 (167)
Q Consensus       146 ~l~df~~~~~  155 (167)
                      +++|||.+..
T Consensus       162 kl~Dfg~~~~  171 (284)
T 2a19_B          162 KIGDFGLVTS  171 (284)
T ss_dssp             EECCCTTCEE
T ss_pred             EECcchhhee
Confidence            9999998763

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.86  E-value=1.9e-21  Score=137.11  Aligned_cols=142  Identities=24%  Similarity=0.360  Sum_probs=115.6

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ....++|.+.+.||+|+||.||++...    ++..+|+|.+... .....+.+.+|+.+++.++||||+++++++.. +.
T Consensus         8 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-~~   86 (281)
T 3cc6_A            8 GIAREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE-EP   86 (281)
T ss_dssp             SCCGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-SS
T ss_pred             eecccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-CC
Confidence            345678999999999999999999842    2346899987654 33455778999999999999999999999864 45


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        87 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~~  162 (281)
T 3cc6_A           87 TWIIMELYPYGELGHYLERNKNSLKVLTLVLYSLQICKAMAYLESINCVHRDIAVRNIL---VASPECVKLGDFGLSRY  162 (281)
T ss_dssp             CEEEEECCTTCBHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEE---EEETTEEEECCCCGGGC
T ss_pred             CEEEEecCCCCCHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHCCcccCCCccceEE---ECCCCcEEeCccCCCcc
Confidence            7899999999999999986542  445556667788888877      47899999999   78888999999999874

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.86  E-value=2e-21  Score=138.27  Aligned_cols=136  Identities=18%  Similarity=0.172  Sum_probs=111.4

Q ss_pred             hhcCCccc-ceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHH-hcCCCCceeeeeeeeec----CCc
Q 040049           12 ATDHLNVN-IVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVIL-SQINYRNVVKLLGCCLE----TEV   84 (167)
Q Consensus        12 ~~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~-~~l~h~~i~~l~~~~~~----~~~   84 (167)
                      ..++|.+. +.||+|+||.||++.. .+++.+|+|.+..     .....+|+..+ +..+||||+++++++..    ...
T Consensus        15 ~~~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~   89 (299)
T 3m2w_A           15 IIDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKC   89 (299)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEE
T ss_pred             cccchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhhcCCCce
Confidence            34667777 7899999999999985 5789999998853     24566788777 55689999999999876    667


Q ss_pred             ceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc---cCCccccccch
Q 040049           85 PLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK---GLAPKRKKFEE  152 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~---~~~~~l~df~~  152 (167)
                      .++|+||+++|+|.+++....   ......+..+.+++.++.++      |+|+++.||+   +..   +..++++|||.
T Consensus        90 ~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~~~kl~Dfg~  166 (299)
T 3m2w_A           90 LLIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLL---YTSKRPNAILKLTDFGF  166 (299)
T ss_dssp             EEEEECCCCSCBHHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESSSSTTCCEEECCCTT
T ss_pred             EEEEEeecCCCcHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEE---EecCCCCCcEEEecccc
Confidence            899999999999999998764   35556677788888888774      7899999999   665   67899999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       167 a~~  169 (299)
T 3m2w_A          167 AKE  169 (299)
T ss_dssp             CEE
T ss_pred             ccc
Confidence            863

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.86  E-value=6.4e-22  Score=154.87  Aligned_cols=138  Identities=14%  Similarity=0.162  Sum_probs=111.6

Q ss_pred             hcCCcccceecccCceeEEEEEeC--CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-----
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA--DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-----   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~--~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-----   84 (167)
                      .++|.+.+.||+|+||.||++.+.  +++.|++|.+... .......+.+|+.++..++||||+++++++...+.     
T Consensus        79 ~~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~  158 (681)
T 2pzi_A           79 AGQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPV  158 (681)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEE
T ss_pred             CCceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCce
Confidence            478999999999999999999854  6899999987543 23445678899999999999999999999987655     


Q ss_pred             ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .|+||||++|++|.+++.. ..+....+..+.+++.++.+      +|+|+|+.||+   +..+ .++|+|||.++.
T Consensus       159 ~~lv~E~~~g~~L~~~~~~-~l~~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIl---l~~~-~~kl~DFG~a~~  230 (681)
T 2pzi_A          159 GYIVMEYVGGQSLKRSKGQ-KLPVAEAIAYLLEILPALSYLHSIGLVYNDLKPENIM---LTEE-QLKLIDLGAVSR  230 (681)
T ss_dssp             EEEEEECCCCEECC----C-CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECSS-CEEECCCTTCEE
T ss_pred             eEEEEEeCCCCcHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHCCCeecccChHHeE---EeCC-cEEEEecccchh
Confidence            6999999999999988765 34556666777888888877      47899999998   6554 889999999874

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.86  E-value=2.1e-21  Score=137.52  Aligned_cols=139  Identities=24%  Similarity=0.302  Sum_probs=109.7

Q ss_pred             hhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ...++|.+.+.||+|+||.||++..  ...+|+|.+....  ....+.+.+|+.+++.++||||++++++. ..+..+++
T Consensus        21 i~~~~y~~~~~lG~G~~g~Vy~~~~--~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~-~~~~~~lv   97 (289)
T 3og7_A           21 IPDGQITVGQRIGSGSFGTVYKGKW--HGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYS-TAPQLAIV   97 (289)
T ss_dssp             CCTTSCEEEEEEEECSSEEEEEEES--SSEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEE-CSSSCEEE
T ss_pred             cCccceeeeeEecCCCCeEEEEEEE--cCceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeec-cCCccEEE
Confidence            3557899999999999999999984  3358999876443  34456789999999999999999999965 55678999


Q ss_pred             EecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++++|.+.+.....  .....+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        98 ~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil---~~~~~~~kl~Dfg~~~~  169 (289)
T 3og7_A           98 TQWCEGSSLYHHLHASETKFEMKKLIDIARQTARGMDYLHAKSIIHRDLKSNNIF---LHEDNTVKIGDFGLATE  169 (289)
T ss_dssp             EECCCEEEHHHHHTTC---CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EETTTEEEECCCC----
T ss_pred             EEecCCCcHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEE---ECCCCCEEEccceeccc
Confidence            999999999999975432  344555667788888877      47899999999   78888999999999863

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=99.85  E-value=4.2e-22  Score=144.30  Aligned_cols=139  Identities=20%  Similarity=0.240  Sum_probs=115.8

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcc-----------------cHHHHHHHHHHHhcCCCCceeee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG-----------------KLDEFINKVVILSQINYRNVVKL   75 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~-----------------~~~~~~~e~~~~~~l~h~~i~~l   75 (167)
                      .++|.+.+.||+|+||.||++.. +++.+|+|.+......                 ..+.+.+|+.++..++||||+++
T Consensus        30 ~~~y~~~~~lg~G~~g~V~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~  108 (348)
T 2pml_X           30 INDYRIIRTLNQGKFNKIILCEK-DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLTC  108 (348)
T ss_dssp             ETTEEEEEEEECCSSCCEEEEEE-TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCCC
T ss_pred             cCceEEEEEEcCCCCeEEEEEEc-CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcceE
Confidence            47899999999999999999998 8999999987542111                 12788999999999999999999


Q ss_pred             eeeeecCCcceEEEecCCCCCHHHH------Hhhc---CcchHhhHHHHHHHHcCchhh-------hhcccchhHHHHhh
Q 040049           76 LGCCLETEVPLLVYEYIPNGNLSDY------LHEQ---NEDFVKDVGFILSRRGGIPRL-------KRKKKKNKIWKQQL  139 (167)
Q Consensus        76 ~~~~~~~~~~~lv~e~~~~g~L~~~------i~~~---~~~~~~~~~~~~~i~~~l~~~-------h~~~~~~~~~~~~~  139 (167)
                      ++++...+..++|+||+++++|.++      +...   .......+..+.+++.++.++       |+|+++.||+   +
T Consensus       109 ~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil---~  185 (348)
T 2pml_X          109 EGIITNYDEVYIIYEYMENDSILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNIL---M  185 (348)
T ss_dssp             SEEEESSSEEEEEEECCTTCBSSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEE---E
T ss_pred             EEEEeeCCeEEEEEeccCCCcHHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEE---E
Confidence            9999999999999999999999998      5542   124455666677787777664       5699999999   8


Q ss_pred             hccCCccccccchhhh
Q 040049          140 LKGLAPKRKKFEEEKW  155 (167)
Q Consensus       140 ~~~~~~~l~df~~~~~  155 (167)
                      ..+..++++|||.+..
T Consensus       186 ~~~~~~kl~dfg~~~~  201 (348)
T 2pml_X          186 DKNGRVKLSDFGESEY  201 (348)
T ss_dssp             CTTSCEEECCCTTCEE
T ss_pred             cCCCcEEEeccccccc
Confidence            8888999999999874

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.85  E-value=2e-21  Score=151.39  Aligned_cols=141  Identities=17%  Similarity=0.320  Sum_probs=115.3

Q ss_pred             hhhcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      ...++|.+.+.||+|+||.||+|...    .+..+|+|.+... .....+.+.+|+.+++.++||||+++++++. .+..
T Consensus       387 i~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~  465 (656)
T 2j0j_A          387 IQRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPV  465 (656)
T ss_dssp             CCGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSC
T ss_pred             cccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEe-cCce
Confidence            34567888999999999999999853    2467899987643 3334567899999999999999999999984 5678


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++||||+++|+|.+++.....  .....+..+.+++.|+.+      +|+|+|+.||+   +..+..++|+|||.++.
T Consensus       466 ~lv~E~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~aL~~LH~~givHrDikp~NIL---l~~~~~vkL~DFG~a~~  540 (656)
T 2j0j_A          466 WIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL---VSSNDCVKLGDFGLSRY  540 (656)
T ss_dssp             EEEEECCTTCBHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECCCCCCCS
T ss_pred             EEEEEcCCCCcHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhCCccccccchHhEE---EeCCCCEEEEecCCCee
Confidence            999999999999999986542  444555667788888877      47899999999   88889999999999874

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.85  E-value=2.6e-21  Score=139.54  Aligned_cols=140  Identities=27%  Similarity=0.341  Sum_probs=109.1

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHH--HhcCCCCceeeeeeeeec-----
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVI--LSQINYRNVVKLLGCCLE-----   81 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~--~~~l~h~~i~~l~~~~~~-----   81 (167)
                      .....++|.+.+.||+|+||.||++.. +++.+|+|.+...   ....+..|..+  +..++||||+++++.+..     
T Consensus         8 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~-~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~   83 (336)
T 3g2f_A            8 PSLDLDNLKLLELIGRGRYGAVYKGSL-DERPVAVKVFSFA---NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADG   83 (336)
T ss_dssp             -CCCTTSEEEEEEEEECSSEEEEEEEE-TTEEEEEEEEEGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTS
T ss_pred             CCcChHHhheeeecccCCCeEEEEEEE-CCeEEEEEEeecc---chhhHHHHHHHHHHHhccCcchhhheecccccccCC
Confidence            344668999999999999999999976 6889999987633   23444445444  445899999999975532     


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh---------------hhhcccchhHHHHhhhccCCcc
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR---------------LKRKKKKNKIWKQQLLKGLAPK  146 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~---------------~h~~~~~~~~~~~~~~~~~~~~  146 (167)
                      ....++||||+++|+|.+++..........+..+.+++.++.+               +|+|+|++||+   +..+..++
T Consensus        84 ~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nil---l~~~~~~k  160 (336)
T 3g2f_A           84 RMEYLLVMEYYPNGSLXKYLSLHTSDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVL---VKNDGTCV  160 (336)
T ss_dssp             CEEEEEEECCCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEE---ECTTSCEE
T ss_pred             CceEEEEEecCCCCcHHHHHhhcccchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEE---EcCCCcEE
Confidence            3357899999999999999987766656666667777766654               56789999999   78888999


Q ss_pred             ccccchhhh
Q 040049          147 RKKFEEEKW  155 (167)
Q Consensus       147 l~df~~~~~  155 (167)
                      |+|||.++.
T Consensus       161 L~DFG~a~~  169 (336)
T 3g2f_A          161 ISDFGLSMR  169 (336)
T ss_dssp             ECCCTTCEE
T ss_pred             Eeeccceee
Confidence            999999863

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=99.85  E-value=1.9e-21  Score=138.86  Aligned_cols=141  Identities=23%  Similarity=0.289  Sum_probs=110.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-----cccHHHHHHHHHHHhcC---CCCceeeeeeeeec
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-----KGKLDEFINKVVILSQI---NYRNVVKLLGCCLE   81 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-----~~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~~   81 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+....     ......+.+|+..++.+   +||||+++++++..
T Consensus         6 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~   85 (308)
T 3g33_A            6 MATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCAT   85 (308)
T ss_dssp             ----CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEE
T ss_pred             ccccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeec
Confidence            3567999999999999999999994 578999999875322     12234566777666655   59999999999977


Q ss_pred             CC-----cceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccc
Q 040049           82 TE-----VPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        82 ~~-----~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                      ..     ..++++|++.+ +|.+++.....   .....+..+.+++.++.+      +|+|+|++||+   +..+..++|
T Consensus        86 ~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil---~~~~~~~kl  161 (308)
T 3g33_A           86 SRTDREIKVTLVFEHVDQ-DLRTYLDKAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENIL---VTSGGTVKL  161 (308)
T ss_dssp             CCSSSEEEEEEEEECCCC-BHHHHHHTCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEE---ECTTSCEEE
T ss_pred             cCCCCceeEEEEehhhhc-CHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---EcCCCCEEE
Confidence            55     47899999975 99999987642   445566677888888877      47899999999   788889999


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.++.
T Consensus       162 ~Dfg~a~~  169 (308)
T 3g33_A          162 ADFGLARI  169 (308)
T ss_dssp             CSCSCTTT
T ss_pred             eeCccccc
Confidence            99999873

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=99.85  E-value=1.1e-21  Score=141.29  Aligned_cols=146  Identities=16%  Similarity=0.151  Sum_probs=118.7

Q ss_pred             HHHHhhhcCCccc-ceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCC-CCceeeeeeeeec
Q 040049            7 KELDKATDHLNVN-IVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQIN-YRNVVKLLGCCLE   81 (167)
Q Consensus         7 ~~~~~~~~~~~~~-~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~   81 (167)
                      +....-.++|.+. +.||+|+||.||++.. .+++.+|+|.+...  .......+.+|+.++..+. ||||+++++++..
T Consensus        21 ~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~~  100 (327)
T 3lm5_A           21 QSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYEN  100 (327)
T ss_dssp             BCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEEC
T ss_pred             HHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEEe
Confidence            3444556677777 8899999999999985 47899999987643  3344678899999999985 6999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc---cCCccccc
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK---GLAPKRKK  149 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~---~~~~~l~d  149 (167)
                      .+..++|+||+++|+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..   ...++|+|
T Consensus       101 ~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl---~~~~~~~~~~kL~D  177 (327)
T 3lm5_A          101 TSEIILILEYAAGGEIFSLCLPELAEMVSENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNIL---LSSIYPLGDIKIVD  177 (327)
T ss_dssp             SSEEEEEEECCTTEEGGGGGSSCC-CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ESCBTTBCCEEECC
T ss_pred             CCeEEEEEEecCCCcHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEE---EecCCCCCcEEEee
Confidence            999999999999999999886532   2445566677888888877      47899999999   555   67899999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.++.
T Consensus       178 fg~a~~  183 (327)
T 3lm5_A          178 FGMSRK  183 (327)
T ss_dssp             GGGCEE
T ss_pred             Cccccc
Confidence            999874

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.85  E-value=3.7e-21  Score=136.51  Aligned_cols=139  Identities=14%  Similarity=0.101  Sum_probs=114.9

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+....  ..+.+.+|+..+..+ +|++++++++++......+++
T Consensus         7 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~lv   84 (298)
T 1csn_A            7 VVGVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLV   84 (298)
T ss_dssp             EETTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEE
T ss_pred             ccccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCCCceeEEE
Confidence            3457899999999999999999994 678999999875432  224577899999998 799999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC-----ccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA-----PKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~-----~~l~df~~~~~  155 (167)
                      +||+ +++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..     ++++|||.++.
T Consensus        85 ~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl---~~~~~~~~~~~~kl~Dfg~~~~  160 (298)
T 1csn_A           85 IDLL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFL---IGRPNSKNANMIYVVDFGMVKF  160 (298)
T ss_dssp             EECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ECCSSSTTTTCEEECCCTTCEE
T ss_pred             EEec-CCCHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEE---eccCCCCCCCeEEEEECccccc
Confidence            9999 889999998654  2455666777888888877      47899999999   655544     89999999873

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=99.85  E-value=3.1e-21  Score=137.36  Aligned_cols=140  Identities=19%  Similarity=0.217  Sum_probs=111.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC----cccHHHHHHHHHHHhcCCCCceeeeeeeee--cCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG----KGKLDEFINKVVILSQINYRNVVKLLGCCL--ETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~----~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~--~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++.. .++..+++|.+....    ......+.+|+.+++.++||||+++++++.  ..+.
T Consensus         3 l~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~   82 (305)
T 2wtk_C            3 LIGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYNEEKQK   82 (305)
T ss_dssp             --CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECC---C
T ss_pred             cccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEcCCCCe
Confidence            347899999999999999999995 578899999875431    234567899999999999999999999984  4567


Q ss_pred             ceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||++++ |.+.+....   ......+..+.+++.++.++      |+|+++.||+   +..+..++++|||.+..
T Consensus        83 ~~lv~e~~~~~-l~~~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl---~~~~~~~kl~dfg~~~~  158 (305)
T 2wtk_C           83 MYMVMEYCVCG-MQEMLDSVPEKRFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLL---LTTGGTLKISALGVAEA  158 (305)
T ss_dssp             EEEEEECCSEE-HHHHHHHSTTCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEEEehhccCC-HHHHHHhCcccccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEE---EcCCCcEEeeccccccc
Confidence            89999999875 777776532   24455666777888888774      7899999999   78888999999999864

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.85  E-value=1.4e-21  Score=142.64  Aligned_cols=140  Identities=15%  Similarity=0.125  Sum_probs=108.6

Q ss_pred             hhcCCcccceecccCceeEEEEEeCC------CcEEEEEeccCCCccc-----------HHHHHHHHHHHhcCCCCceee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLAD------ERIVAVKKSKVVGKGK-----------LDEFINKVVILSQINYRNVVK   74 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~------~~~~avk~~~~~~~~~-----------~~~~~~e~~~~~~l~h~~i~~   74 (167)
                      ..++|.+.+.||+|+||.||+|.+..      ++.+|+|.+.......           ......|+..+..++||||++
T Consensus        33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~  112 (364)
T 3op5_A           33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK  112 (364)
T ss_dssp             TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred             CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence            34589999999999999999998543      4789999876443211           112344556677889999999


Q ss_pred             eeeeeecC----CcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh--
Q 040049           75 LLGCCLET----EVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL--  140 (167)
Q Consensus        75 l~~~~~~~----~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~--  140 (167)
                      +++++...    ...++||||+ +++|.+++....  ......+..+.+++.++.+      +|+|+|+.||+   +.  
T Consensus       113 ~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Nil---l~~~  188 (364)
T 3op5_A          113 YWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNLL---LNYK  188 (364)
T ss_dssp             EEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---EESS
T ss_pred             EEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHEE---EecC
Confidence            99998764    4589999999 999999998753  2555666778888888887      47999999999   66  


Q ss_pred             ccCCccccccchhhh
Q 040049          141 KGLAPKRKKFEEEKW  155 (167)
Q Consensus       141 ~~~~~~l~df~~~~~  155 (167)
                      .+..++|+|||.++.
T Consensus       189 ~~~~~kl~DFG~a~~  203 (364)
T 3op5_A          189 NPDQVYLVDYGLAYR  203 (364)
T ss_dssp             CTTCEEECCCTTCEE
T ss_pred             CCCeEEEEECCccee
Confidence            678899999999863

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=99.85  E-value=5e-21  Score=135.32  Aligned_cols=140  Identities=15%  Similarity=0.160  Sum_probs=105.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-cc-HHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GK-LDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~-~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+..... .. .+.+..+...++.++||||+++++++...+..++|
T Consensus         5 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~~~~~lv   84 (290)
T 3fme_A            5 KADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFREGDVWIC   84 (290)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSSEEEE
T ss_pred             cHHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeeccCCEEEE
Confidence            467899999999999999999995 5789999998865422 22 22344445567888999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+++ +|.+++...     .......+..+.+++.++.+       +|+|+++.||+   +.....++++|||.++.
T Consensus        85 ~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil---~~~~~~~kl~Dfg~~~~  159 (290)
T 3fme_A           85 MELMDT-SLDKFYKQVIDKGQTIPEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVL---INALGQVKMCDFGISGY  159 (290)
T ss_dssp             EECCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCE---ECTTCCEEBCCC-----
T ss_pred             Eehhcc-chHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEE---ECCCCCEEEeecCCccc
Confidence            999975 888877642     22445555667777777765       56899999999   78888999999999874

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.84  E-value=1e-21  Score=140.50  Aligned_cols=147  Identities=14%  Similarity=0.211  Sum_probs=119.7

Q ss_pred             ccHHHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCC--CCceeeeeeee
Q 040049            4 FSAKELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQIN--YRNVVKLLGCC   79 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~--h~~i~~l~~~~   79 (167)
                      ++++.+....++|.+.+.||+|+||.||++...+++.+|+|.+...  .....+.+.+|+.++..++  ||||+++++++
T Consensus        18 ~~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~   97 (313)
T 3cek_A           18 LYFQSMSVKGRIYSILKQIGSGGSSKVFQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYE   97 (313)
T ss_dssp             --CCEEEETTEEEEEEEEEECCSSEEEEEEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEE
T ss_pred             CCeeeeeeccceEEEEEEecCCCCEEEEEEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEe
Confidence            4455566677889999999999999999999777899999987543  3344567889999999986  59999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      ...+..++++| +.+++|.+++..... .....+..+.+++.++.+      +|+|+++.||+   + .+..++|+|||.
T Consensus        98 ~~~~~~~lv~e-~~~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl---~-~~~~~kL~Dfg~  172 (313)
T 3cek_A           98 ITDQYIYMVME-CGNIDLNSWLKKKKSIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFL---I-VDGMLKLIDFGI  172 (313)
T ss_dssp             ECSSEEEEEEC-CCSEEHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---E-ETTEEEECCCSS
T ss_pred             ecCCEEEEEEe-cCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEE---E-ECCeEEEeeccc
Confidence            99999999999 567899999987643 445566667888888877      47899999998   4 457889999999


Q ss_pred             hhh
Q 040049          153 EKW  155 (167)
Q Consensus       153 ~~~  155 (167)
                      ++.
T Consensus       173 ~~~  175 (313)
T 3cek_A          173 ANQ  175 (313)
T ss_dssp             SCC
T ss_pred             ccc
Confidence            873

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.84  E-value=3.5e-21  Score=136.22  Aligned_cols=140  Identities=24%  Similarity=0.284  Sum_probs=108.0

Q ss_pred             hhcCCcccceecccCceeEEEEEe-C-CC--cEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-A-DE--RIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~-~~--~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ..++|.+.+.||+|+||.||++.+ . ++  ..+++|.+...   .....+.+.+|+.+++.++||||+++++++...+ 
T Consensus        16 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~~-   94 (291)
T 1u46_A           16 GEKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLTPP-   94 (291)
T ss_dssp             CGGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECSSS-
T ss_pred             chhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEccCC-
Confidence            356899999999999999999984 2 33  36899987643   2344567899999999999999999999997655 


Q ss_pred             ceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.+..
T Consensus        95 ~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil---i~~~~~~kl~Dfg~~~~  170 (291)
T 1u46_A           95 MKMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLL---LATRDLVKIGDFGLMRA  170 (291)
T ss_dssp             CEEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---EEETTEEEECCCTTCEE
T ss_pred             ceeeEecccCCCHHHHHHhccCCcCHHHHHHHHHHHHHHHHHHHhCCcccCCCchheEE---EcCCCCEEEcccccccc
Confidence            889999999999999998753  2445566667788888877      46899999999   78888999999998763

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=140.82  Aligned_cols=141  Identities=18%  Similarity=0.181  Sum_probs=113.4

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeee--------
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCL--------   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~--------   80 (167)
                      ....+|.+.+.||+|+||.||++.. .+++.+|+|.+........+.+.+|+..+..+. ||||+++++++.        
T Consensus        25 ~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~  104 (337)
T 3ll6_A           25 LGELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDT  104 (337)
T ss_dssp             ETTEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTT
T ss_pred             ccCceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhcccccccccccccc
Confidence            3456899999999999999999995 578999999886555556677899999999996 999999999984        


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcC----cchHhhHHHHHHHHcCch--------hhhhcccchhHHHHhhhccCCcccc
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIP--------RLKRKKKKNKIWKQQLLKGLAPKRK  148 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~--------~~h~~~~~~~~~~~~~~~~~~~~l~  148 (167)
                      .....++++||+. |+|.+++....    ......+..+.+++.++.        .+|+|+++.||+   +..+..++|+
T Consensus       105 ~~~~~~lv~e~~~-g~L~~~l~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl---~~~~~~~kl~  180 (337)
T 3ll6_A          105 GQAEFLLLTELCK-GQLVEFLKKMESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLL---LSNQGTIKLC  180 (337)
T ss_dssp             SSEEEEEEEECCS-EEHHHHHHHHHTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCE---ECTTSCEEBC
T ss_pred             CCceEEEEEEecC-CCHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEE---ECCCCCEEEe
Confidence            2344789999996 59999887521    244455666667777665        467899999999   8888899999


Q ss_pred             ccchhhh
Q 040049          149 KFEEEKW  155 (167)
Q Consensus       149 df~~~~~  155 (167)
                      |||.++.
T Consensus       181 Dfg~~~~  187 (337)
T 3ll6_A          181 DFGSATT  187 (337)
T ss_dssp             CCTTCBC
T ss_pred             cCcccee
Confidence            9999863

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.84  E-value=1.3e-21  Score=141.88  Aligned_cols=139  Identities=12%  Similarity=0.089  Sum_probs=106.8

Q ss_pred             hcCCcccceecccCceeEEEEEeC----CCcEEEEEeccCCCcc-----------cHHHHHHHHHHHhcCCCCceeeeee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKKSKVVGKG-----------KLDEFINKVVILSQINYRNVVKLLG   77 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~----~~~~~avk~~~~~~~~-----------~~~~~~~e~~~~~~l~h~~i~~l~~   77 (167)
                      .++|.+.+.||+|+||.||+|...    ++..+|+|........           ....+.+|+..+..++||||+++++
T Consensus        36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~  115 (345)
T 2v62_A           36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG  115 (345)
T ss_dssp             SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred             CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence            468999999999999999999954    5678999987644321           1123567788889999999999999


Q ss_pred             eeec----CCcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC--C
Q 040049           78 CCLE----TEVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL--A  144 (167)
Q Consensus        78 ~~~~----~~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~--~  144 (167)
                      ++..    ....++|+||+ +++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +..+.  .
T Consensus       116 ~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIl---l~~~~~~~  191 (345)
T 2v62_A          116 SGLTEFKGRSYRFMVMERL-GIDLQKISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLL---LGYKNPDQ  191 (345)
T ss_dssp             EEEEESSSCEEEEEEEECE-EEEHHHHCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EESSSTTS
T ss_pred             ccccccCCCcEEEEEEecc-CCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEE---EccCCCCc
Confidence            9987    67899999999 9999999986542 5566677788888888874      6899999999   76665  8


Q ss_pred             ccccccchhhh
Q 040049          145 PKRKKFEEEKW  155 (167)
Q Consensus       145 ~~l~df~~~~~  155 (167)
                      ++|+|||.++.
T Consensus       192 ~kL~Dfg~a~~  202 (345)
T 2v62_A          192 VYLADYGLSYR  202 (345)
T ss_dssp             EEECCCTTCEE
T ss_pred             EEEEeCCCcee
Confidence            99999999863

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=99.84  E-value=5.8e-21  Score=139.75  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=113.2

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc----
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP----   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~----   85 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+....  ......+.+|+.+++.++||||+++++++...+..    
T Consensus        41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~  120 (371)
T 4exu_A           41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  120 (371)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred             cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence            46899999999999999999985 578999999886532  23356788999999999999999999999877654    


Q ss_pred             --eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 --LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 --~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                        ++++||+.+ +|.+.+... ......+..+.+++.++.+      +|+|+++.||+   +..+..++|+|||.++.
T Consensus       121 ~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl---l~~~~~~kL~Dfg~a~~  193 (371)
T 4exu_A          121 DFYLVMPFMQT-DLQKIMGME-FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLA---VNEDCELKILDFGLARH  193 (371)
T ss_dssp             CCEEEEECCCE-EHHHHTTSC-CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECSTTCC--
T ss_pred             eEEEEEccccc-cHHHHhhcC-CCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeE---ECCCCCEEEEecCcccc
Confidence              999999974 888877533 3555666677788888877      47899999999   88888999999999874

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=99.84  E-value=1.1e-20  Score=140.86  Aligned_cols=138  Identities=20%  Similarity=0.162  Sum_probs=111.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcC------CCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQI------NYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l------~h~~i~~l~~~~~~~~~~   85 (167)
                      ..+|.+.+.||+|+||.||+|.. .+++.||+|.+... ......+.+|++++..+      .|+||+++++.+...+..
T Consensus        96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~~~~  174 (429)
T 3kvw_A           96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNE-KRFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFRNHI  174 (429)
T ss_dssp             TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEETTEE
T ss_pred             cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCc-cchHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccCCeE
Confidence            35699999999999999999984 56899999998643 33345667777777665      678999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC--ccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA--PKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~--~~l~df~~~~  154 (167)
                      ++++||+. ++|.+++....   ......+..+.+++.++.+      +|+|+|++||+   +..+..  ++|+|||.+.
T Consensus       175 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIL---l~~~~~~~vkL~DFG~a~  250 (429)
T 3kvw_A          175 CMTFELLS-MNLYELIKKNKFQGFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENIL---LKQQGRSGIKVIDFGSSC  250 (429)
T ss_dssp             EEEECCCC-CBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEE---ESSTTSCCEEECCCTTCE
T ss_pred             EEEEeccC-CCHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeE---EccCCCcceEEeecccce
Confidence            99999996 59999988754   2445566677888888887      47999999999   776655  8999999986


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       251 ~  251 (429)
T 3kvw_A          251 Y  251 (429)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=99.84  E-value=4.5e-21  Score=141.78  Aligned_cols=136  Identities=18%  Similarity=0.195  Sum_probs=102.5

Q ss_pred             cCCcc-cceecccCceeEEEEEeC---CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcceE
Q 040049           14 DHLNV-NIVLGQGGQGTVHKGMLA---DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPLL   87 (167)
Q Consensus        14 ~~~~~-~~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~l   87 (167)
                      +.|.+ .++||+|+||.||+|...   +++.+|+|.+....  ....+.+|+.+++.++||||+++++++..  ....++
T Consensus        20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~~--~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~l   97 (405)
T 3rgf_A           20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGTG--ISMSACREIALLRELKHPNVISLQKVFLSHADRKVWL   97 (405)
T ss_dssp             HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSSS--CCHHHHHHHHHHHHCCCTTBCCCCEEEEETTTTEEEE
T ss_pred             hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCCC--CCHHHHHHHHHHHhcCCCCeeeEeeEEecCCCCeEEE
Confidence            44655 457999999999999853   57889999886432  23567899999999999999999999954  667899


Q ss_pred             EEecCCCCCHHHHHhhcC----------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh----hccCCccc
Q 040049           88 VYEYIPNGNLSDYLHEQN----------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL----LKGLAPKR  147 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~----------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~----~~~~~~~l  147 (167)
                      |+||+.+ +|.+.+....          ......+..+.+++.|+.+      +|+|+|++||+   +    .....++|
T Consensus        98 v~e~~~~-~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIl---l~~~~~~~~~~kl  173 (405)
T 3rgf_A           98 LFDYAEH-DLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANIL---VMGEGPERGRVKI  173 (405)
T ss_dssp             EEECCSE-EHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECCSSTTTTCEEE
T ss_pred             EEeCCCC-CHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeE---EecCCCCCCcEEE
Confidence            9999975 8888887432          2334455667788888887      47899999999   6    56678999


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||+++.
T Consensus       174 ~Dfg~a~~  181 (405)
T 3rgf_A          174 ADMGFARL  181 (405)
T ss_dssp             CCTTCCC-
T ss_pred             EECCCcee
Confidence            99999874

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.84  E-value=1.6e-21  Score=139.40  Aligned_cols=143  Identities=23%  Similarity=0.227  Sum_probs=107.8

Q ss_pred             HhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc------cHHHHHHHHHHHhcC----CCCceeeeeee
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG------KLDEFINKVVILSQI----NYRNVVKLLGC   78 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~------~~~~~~~e~~~~~~l----~h~~i~~l~~~   78 (167)
                      ....++|.+.+.||+|+||.||++.. .+++.+|+|.+......      ....+.+|+..+..+    +||||++++++
T Consensus        27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~  106 (312)
T 2iwi_A           27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW  106 (312)
T ss_dssp             ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred             hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence            34467899999999999999999984 57889999988654221      223355688888877    89999999999


Q ss_pred             eecCCcceEEEec-CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhh-ccCCccccc
Q 040049           79 CLETEVPLLVYEY-IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLL-KGLAPKRKK  149 (167)
Q Consensus        79 ~~~~~~~~lv~e~-~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~-~~~~~~l~d  149 (167)
                      +...+..++++|+ +.+++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +. .+..++++|
T Consensus       107 ~~~~~~~~~v~e~~~~~~~L~~~l~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil---~~~~~~~~kl~d  183 (312)
T 2iwi_A          107 FETQEGFMLVLERPLPAQDLFDYITEKGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENIL---IDLRRGCAKLID  183 (312)
T ss_dssp             C-----CEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEE---EETTTTEEEECC
T ss_pred             EecCCeEEEEEEecCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEE---EeCCCCeEEEEE
Confidence            9999999999999 788999999987643 5566677788888888774      6899999999   66 677899999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.+..
T Consensus       184 fg~~~~  189 (312)
T 2iwi_A          184 FGSGAL  189 (312)
T ss_dssp             CSSCEE
T ss_pred             cchhhh
Confidence            998763

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.83  E-value=1.2e-20  Score=135.67  Aligned_cols=141  Identities=14%  Similarity=0.154  Sum_probs=111.2

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHH-HHhcCCCCceeeeeeeeecCCcceE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVV-ILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~-~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+.... ......+..|+. +++.++||||+++++++...+..++
T Consensus        19 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~~~~~l   98 (327)
T 3aln_A           19 FTAEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFREGDCWI   98 (327)
T ss_dssp             CCSCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECSSEEEE
T ss_pred             cCHHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeCCceEE
Confidence            3457899999999999999999995 578999999886542 233345556665 6777899999999999999999999


Q ss_pred             EEecCCCCCHHHHHhh------cCcchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHE------QNEDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~------~~~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      ++||+++ +|.+++..      ........+..+.+++.++.+       +|+|+++.||+   +..+..++|+|||.++
T Consensus        99 v~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIl---l~~~~~~kl~Dfg~~~  174 (327)
T 3aln_A           99 CMELMST-SFDKFYKYVYSVLDDVIPEEILGKITLATVKALNHLKENLKIIHRDIKPSNIL---LDRSGNIKLCDFGISG  174 (327)
T ss_dssp             EECCCSE-EHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEE---EETTTEEEECCCSSSC
T ss_pred             EEeecCC-ChHHHHHHHHhhhcccCcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEE---EcCCCCEEEccCCCce
Confidence            9999986 88887763      222445556667777777765       57899999999   7888899999999986


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       175 ~  175 (327)
T 3aln_A          175 Q  175 (327)
T ss_dssp             C
T ss_pred             e
Confidence            3

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.83  E-value=2.2e-21  Score=148.85  Aligned_cols=128  Identities=14%  Similarity=-0.025  Sum_probs=96.2

Q ss_pred             cccCceeEEEEE-eCCCcEEEEEeccCCC----------cccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEe
Q 040049           23 GQGGQGTVHKGM-LADERIVAVKKSKVVG----------KGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        23 g~g~~g~v~~~~-~~~~~~~avk~~~~~~----------~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ..|+.|....++ .-.|+.+++|.+....          ....+.+.+|+.+|+++ .|+||+++++++++.+.+|||||
T Consensus       243 ~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed~~~~yLVME  322 (569)
T 4azs_A          243 YAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGENAQSGWLVME  322 (569)
T ss_dssp             C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEECSSEEEEEEE
T ss_pred             ccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEECCEEEEEEe
Confidence            344444433333 2247788999775431          12345689999999999 69999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |++|++|.+.|...+....  ...+.|++.+|.|      +|||+||+|||   +..+..+||+|||+|+.
T Consensus       323 yv~G~~L~d~i~~~~~l~~--~~I~~QIl~AL~ylH~~GIIHRDIKPeNIL---L~~dg~vKL~DFGlAr~  388 (569)
T 4azs_A          323 KLPGRLLSDMLAAGEEIDR--EKILGSLLRSLAALEKQGFWHDDVRPWNVM---VDARQHARLIDFGSIVT  388 (569)
T ss_dssp             CCCSEEHHHHHHTTCCCCH--HHHHHHHHHHHHHHHHTTCEESCCCGGGEE---ECTTSCEEECCCTTEES
T ss_pred             cCCCCcHHHHHHhCCCCCH--HHHHHHHHHHHHHHHHCCceeccCchHhEE---ECCCCCEEEeecccCee
Confidence            9999999999997654222  2356788888877      57999999999   88889999999999873

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=99.83  E-value=9.3e-21  Score=137.70  Aligned_cols=138  Identities=16%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-----
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-----   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-----   84 (167)
                      .++|.+.+.||+|+||.||++.. .+|+.+|+|.+....  ......+.+|+.+++.++||||+++++++...+.     
T Consensus        23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~  102 (353)
T 3coi_A           23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY  102 (353)
T ss_dssp             ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred             CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence            46899999999999999999985 578999999876432  2334678899999999999999999999987654     


Q ss_pred             -ceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 -PLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 -~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       .++++||+.+ +|.+.+... ......+..+.+++.++.+      +|+|+++.||+   +..+..++++|||.++.
T Consensus       103 ~~~lv~e~~~~-~l~~~~~~~-~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl---~~~~~~~kl~Dfg~~~~  175 (353)
T 3coi_A          103 DFYLVMPFMQT-DLQKIMGLK-FSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLA---VNEDCELKILDFGLARH  175 (353)
T ss_dssp             CCEEEEECCSE-EGGGTTTSC-CCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEE---ECTTCCEEECSTTCTTC
T ss_pred             eEEEEeccccC-CHHHHhcCC-CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEe---ECCCCcEEEeecccccC
Confidence             4999999974 888776543 3455666677888888877      47899999999   88888999999999874

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.83  E-value=2.3e-21  Score=140.86  Aligned_cols=134  Identities=8%  Similarity=0.022  Sum_probs=108.5

Q ss_pred             hcCCcccceecccCceeEEEEEeC---------CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceee---------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA---------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVK---------   74 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~---------~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~---------   74 (167)
                      .++|.+.+.||+|+||.||++...         .++.+|+|.+...     +.+.+|+.++..++||||++         
T Consensus        41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~  115 (352)
T 2jii_A           41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP  115 (352)
T ss_dssp             SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence            478999999999999999999854         3788999987643     35778999999999999987         


Q ss_pred             ------eeeeeec-CCcceEEEecCCCCCHHHHHhhc---CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHh
Q 040049           75 ------LLGCCLE-TEVPLLVYEYIPNGNLSDYLHEQ---NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQ  138 (167)
Q Consensus        75 ------l~~~~~~-~~~~~lv~e~~~~g~L~~~i~~~---~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~  138 (167)
                            +++++.. .+..++|+||+ +++|.+++...   .......+..+.+++.++.+      +|+|+++.||+   
T Consensus       116 ~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl---  191 (352)
T 2jii_A          116 LLAIPTCMGFGVHQDKYRFLVLPSL-GRSLQSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIF---  191 (352)
T ss_dssp             TCSCCCCCEEEEETTTEEEEEEECC-CEEHHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEE---
T ss_pred             ccCccchhhccccCCcEEEEEecCC-CcCHHHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEE---
Confidence                  5666655 67789999999 89999999875   23556667778888888887      47899999999   


Q ss_pred             hhccC--Cccccccchhhh
Q 040049          139 LLKGL--APKRKKFEEEKW  155 (167)
Q Consensus       139 ~~~~~--~~~l~df~~~~~  155 (167)
                      +..+.  .++|+|||.++.
T Consensus       192 ~~~~~~~~~kl~Dfg~a~~  210 (352)
T 2jii_A          192 VDPEDQSQVTLAGYGFAFR  210 (352)
T ss_dssp             EETTEEEEEEECCGGGCBC
T ss_pred             EcCCCCceEEEecCcceee
Confidence            77766  899999999963

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=99.83  E-value=5.2e-21  Score=139.95  Aligned_cols=138  Identities=9%  Similarity=-0.051  Sum_probs=96.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHH---HHHhcCCCCceeeee-------ee
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKV---VILSQINYRNVVKLL-------GC   78 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~---~~~~~l~h~~i~~l~-------~~   78 (167)
                      ..+|.+.+.||+|+||.||++.. .+++.+|+|.+.....   ...+.+.+|+   ..++. +||||++++       ++
T Consensus        61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~-~hp~iv~~~~~~~~p~d~  139 (371)
T 3q60_A           61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLG-ESPEEARDRRRLLLPSDA  139 (371)
T ss_dssp             EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC-----------CBCCCCEE
T ss_pred             ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcc-cChhhhhhceeEEeeehh
Confidence            34589999999999999999995 5789999998876432   2345567774   45555 799988755       34


Q ss_pred             eecC-----------------CcceEEEecCCCCCHHHHHhhcCc--chHhh------HHHHHHHHcCchh------hhh
Q 040049           79 CLET-----------------EVPLLVYEYIPNGNLSDYLHEQNE--DFVKD------VGFILSRRGGIPR------LKR  127 (167)
Q Consensus        79 ~~~~-----------------~~~~lv~e~~~~g~L~~~i~~~~~--~~~~~------~~~~~~i~~~l~~------~h~  127 (167)
                      +..+                 ...++||||++ |+|.+++.....  .....      +..+.+++.++.+      +|+
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHr  218 (371)
T 3q60_A          140 VAVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHG  218 (371)
T ss_dssp             EEETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEET
T ss_pred             eecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccC
Confidence            4322                 23799999998 799999987532  22222      3344788888887      479


Q ss_pred             cccchhHHHHhhhccCCccccccchhhh
Q 040049          128 KKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|++||+   +..+..++|+|||+++.
T Consensus       219 Dikp~NIl---l~~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          219 HFTPDNLF---IMPDGRLMLGDVSALWK  243 (371)
T ss_dssp             TCSGGGEE---ECTTSCEEECCGGGEEE
T ss_pred             cCCHHHEE---ECCCCCEEEEecceeee
Confidence            99999999   88888999999999874

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=99.83  E-value=5.4e-21  Score=137.28  Aligned_cols=143  Identities=23%  Similarity=0.305  Sum_probs=111.7

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe--CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcC---CCCceeeeeeeee-
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML--ADERIVAVKKSKVVG--KGKLDEFINKVVILSQI---NYRNVVKLLGCCL-   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l---~h~~i~~l~~~~~-   80 (167)
                      +....++|.+.+.||+|+||.||++..  .+++.+|+|.+....  ......+.+|+.+++.+   +||||+++++++. 
T Consensus         6 ~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~   85 (326)
T 1blx_A            6 LCRADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTV   85 (326)
T ss_dssp             CCCGGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEE
T ss_pred             ccCchhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeee
Confidence            344568999999999999999999986  467889999775321  22223455676666555   8999999999986 


Q ss_pred             ----cCCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccc
Q 040049           81 ----ETEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKR  147 (167)
Q Consensus        81 ----~~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l  147 (167)
                          .....++++||++ |+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..+..++|
T Consensus        86 ~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nil---i~~~~~~kl  161 (326)
T 1blx_A           86 SRTDRETKLTLVFEHVD-QDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL---VTSSGQIKL  161 (326)
T ss_dssp             EECSSEEEEEEEEECCS-CBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEE
T ss_pred             cccCCCceEEEEEecCC-CCHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeE---EcCCCCEEE
Confidence                4567899999997 59999998653   2445566667788888877      47899999999   788889999


Q ss_pred             cccchhhh
Q 040049          148 KKFEEEKW  155 (167)
Q Consensus       148 ~df~~~~~  155 (167)
                      +|||.++.
T Consensus       162 ~Dfg~~~~  169 (326)
T 1blx_A          162 ADFGLARI  169 (326)
T ss_dssp             CSCCSCCC
T ss_pred             ecCccccc
Confidence            99999874

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=99.83  E-value=1.4e-20  Score=138.80  Aligned_cols=135  Identities=20%  Similarity=0.176  Sum_probs=103.9

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC------cce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETE------VPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~------~~~   86 (167)
                      ..+|.+.+.||+|+||.||++....+..+|+|++......    ..+|+.+++.++||||+++++++...+      ..+
T Consensus        39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~~~aikk~~~~~~~----~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~~  114 (394)
T 4e7w_A           39 EIAYTNCKVIGNGSFGVVFQAKLVESDEVAIKKVLQDKRF----KNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFLN  114 (394)
T ss_dssp             EEEEEEEEEEEEETTEEEEEEEETTTEEEEEEEEECCTTS----CCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEEE
T ss_pred             cceEEEeEEEeeCCCeEEEEEEECCCCeEEEEEEecCcch----HHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEEE
Confidence            3579999999999999999999766666888876433221    226899999999999999999985443      378


Q ss_pred             EEEecCCCCCHHHHHhh-----cCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhh-ccCCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHE-----QNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLL-KGLAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~-----~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~-~~~~~~l~df~~~~  154 (167)
                      +|+||+++ ++.+.+..     ........+..+.+++.++.|+      |+|+|++||+   +. .+..++|+|||.++
T Consensus       115 lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nil---l~~~~~~~kL~DFG~a~  190 (394)
T 4e7w_A          115 LVLEYVPE-TVYRASRHYAKLKQTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLL---LDPPSGVLKLIDFGSAK  190 (394)
T ss_dssp             EEEECCSE-EHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EETTTTEEEECCCTTCE
T ss_pred             EEeeccCc-cHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEE---EcCCCCcEEEeeCCCcc
Confidence            99999987 45444442     1224455666778888888874      7899999999   76 67889999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       191 ~  191 (394)
T 4e7w_A          191 I  191 (394)
T ss_dssp             E
T ss_pred             c
Confidence            3

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.82  E-value=2.4e-20  Score=132.16  Aligned_cols=141  Identities=17%  Similarity=0.115  Sum_probs=107.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeee-ecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC-LETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~-~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+......  ..+.+|+.++..++|++++..+..+ ...+..++++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 4hgt_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTKH--PQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC---C--CCHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeecccccc--hHHHHHHHHHHHhcCCCCCCeeeeecCCCCceEEEE
Confidence            457899999999999999999994 67899999976433221  3477899999999887777666555 5677789999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+ +++|.+++....  ......+..+.+++.++.+      +|+|+++.||++..-..+..++|+|||.++.
T Consensus        85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~  157 (296)
T 4hgt_A           85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             ECC-CCBHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             Ecc-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCcccee
Confidence            999 889999998543  3555666777888888877      4689999999921116778899999999873

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=99.82  E-value=1.7e-20  Score=136.48  Aligned_cols=144  Identities=22%  Similarity=0.178  Sum_probs=98.6

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc-
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV-   84 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~-   84 (167)
                      .......++|.+.+.||+|+||.||++.. .+++.+|+|.+... ........+++..+..++||||+++++++...+. 
T Consensus        16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~   94 (360)
T 3e3p_A           16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQD-PRFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER   94 (360)
T ss_dssp             HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECC-TTCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred             hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecC-ccccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence            34556778999999999999999999995 57899999987543 2233456677888888899999999999865332 


Q ss_pred             ------ceEEEecCCCCCHHHHHhh----cC-cchHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhhc-cCC
Q 040049           85 ------PLLVYEYIPNGNLSDYLHE----QN-EDFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLLK-GLA  144 (167)
Q Consensus        85 ------~~lv~e~~~~g~L~~~i~~----~~-~~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~~-~~~  144 (167)
                            .++++||+++ +|.+.+..    .. ......+..+.+++.++.+        +|+|+|++||+   +.. +..
T Consensus        95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIl---l~~~~~~  170 (360)
T 3e3p_A           95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRRQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVL---VNEADGT  170 (360)
T ss_dssp             CTTCEEEEEEEECCSC-BHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEE---EETTTTE
T ss_pred             cccceeEEEEeecccc-cHHHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEE---EeCCCCc
Confidence                  7899999987 66555543    11 2344455556666666654        56899999999   765 778


Q ss_pred             ccccccchhhh
Q 040049          145 PKRKKFEEEKW  155 (167)
Q Consensus       145 ~~l~df~~~~~  155 (167)
                      ++|+|||.++.
T Consensus       171 ~kl~Dfg~a~~  181 (360)
T 3e3p_A          171 LKLCDFGSAKK  181 (360)
T ss_dssp             EEECCCTTCBC
T ss_pred             EEEeeCCCcee
Confidence            99999999873

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=99.82  E-value=4.1e-21  Score=137.92  Aligned_cols=146  Identities=21%  Similarity=0.265  Sum_probs=115.8

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc------cHHHHHHHHHHHhcCC--CCceeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG------KLDEFINKVVILSQIN--YRNVVKLLG   77 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~------~~~~~~~e~~~~~~l~--h~~i~~l~~   77 (167)
                      .+.....++|.+.+.||+|+||.||++.. .+++.+|+|.+......      ....+.+|+.+++.+.  |||++++++
T Consensus        36 ~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~  115 (320)
T 3a99_A           36 KEKEPLESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLD  115 (320)
T ss_dssp             ----CCTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEE
T ss_pred             cccCCccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEE
Confidence            33445567899999999999999999984 57899999987543211      1234567888898885  599999999


Q ss_pred             eeecCCcceEEEecCCC-CCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhh-ccCCcccc
Q 040049           78 CCLETEVPLLVYEYIPN-GNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLL-KGLAPKRK  148 (167)
Q Consensus        78 ~~~~~~~~~lv~e~~~~-g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~-~~~~~~l~  148 (167)
                      ++...+..++++|++.+ ++|.+++..... .....+..+.+++.++.++      |+|+++.||+   +. .+..++|+
T Consensus       116 ~~~~~~~~~lv~e~~~~~~~L~~~l~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIl---l~~~~~~~kL~  192 (320)
T 3a99_A          116 WFERPDSFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL---IDLNRGELKLI  192 (320)
T ss_dssp             EEECSSEEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EETTTTEEEEC
T ss_pred             EEecCCcEEEEEEcCCCCccHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEE---EeCCCCCEEEe
Confidence            99999999999999975 899999987543 5556667778888888874      7899999999   66 56789999


Q ss_pred             ccchhhh
Q 040049          149 KFEEEKW  155 (167)
Q Consensus       149 df~~~~~  155 (167)
                      |||.++.
T Consensus       193 Dfg~~~~  199 (320)
T 3a99_A          193 DFGSGAL  199 (320)
T ss_dssp             CCTTCEE
T ss_pred             eCccccc
Confidence            9998863

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=99.82  E-value=2e-20  Score=139.07  Aligned_cols=134  Identities=18%  Similarity=0.169  Sum_probs=103.7

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------Ccce
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET------EVPL   86 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~~~~   86 (167)
                      .+|.+.+.||+|+||.||++.. .+++.||+|.+.....    ...+|+.+++.++||||+++++++...      .+++
T Consensus        54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~~----~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~  129 (420)
T 1j1b_A           54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKR----FKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN  129 (420)
T ss_dssp             EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCTT----SCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred             ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccch----hHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence            3689999999999999999995 4789999998754322    223699999999999999999988532      2367


Q ss_pred             EEEecCCCCCHHHHHhhc-----CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhh
Q 040049           87 LVYEYIPNGNLSDYLHEQ-----NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEK  154 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~-----~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~  154 (167)
                      +|+||+++ ++.+.+...     .......+..+.+++.++.|      +|+|+|++||+   +..+ ..++|+|||+++
T Consensus       130 lv~e~~~~-~l~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIL---l~~~~~~~kl~DFG~a~  205 (420)
T 1j1b_A          130 LVLDYVPE-TVYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLL---LDPDTAVLKLCDFGSAK  205 (420)
T ss_dssp             EEEECCCE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEE---EETTTTEEEECCCTTCE
T ss_pred             eehhcccc-cHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEE---EeCCCCeEEeccchhhh
Confidence            99999986 777666531     12444556667788888877      47999999999   6644 567999999997


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       206 ~  206 (420)
T 1j1b_A          206 Q  206 (420)
T ss_dssp             E
T ss_pred             h
Confidence            3

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.82  E-value=5e-20  Score=130.56  Aligned_cols=141  Identities=17%  Similarity=0.114  Sum_probs=111.6

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeee-ecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC-LETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~-~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.....  .+.+.+|+.++..++|++++..+..+ ...+..++++
T Consensus         7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~~~~~~~lv~   84 (296)
T 3uzp_A            7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVM   84 (296)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCSS--CCHHHHHHHHHHHHTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             eccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCcc--hhHHHHHHHHHHHhhcCCCCCccccccCCCCceEEEE
Confidence            457899999999999999999995 6899999998754332  24678999999999987766666555 5667789999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+ +++|.+++....  ......+..+.+++.++.++      |+|+++.||++..-..+..++|+|||.++.
T Consensus        85 e~~-~~~L~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~  157 (296)
T 3uzp_A           85 ELL-GPSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  157 (296)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             Eec-CCCHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCccc
Confidence            999 889999998443  35556667788888888874      689999999921114778899999999873

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.82  E-value=4.8e-20  Score=139.04  Aligned_cols=141  Identities=14%  Similarity=0.109  Sum_probs=111.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCC-CceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINY-RNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h-~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.||+|.+......  ..+..|+.++..+.| +++..+..++...+..++||
T Consensus         5 i~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~~--~~~~~E~~il~~L~~~~~i~~i~~~~~~~~~~~lvm   82 (483)
T 3sv0_A            5 VGNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTKH--PQLLYESKIYRILQGGTGIPNVRWFGVEGDYNVLVM   82 (483)
T ss_dssp             ETTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCSS--CCHHHHHHHHHHTTTSTTCCCEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEecccccc--HHHHHHHHHHHHhcCCCCCCeEEEEEeeCCEEEEEE
Confidence            357899999999999999999994 57899999986543322  347789999999976 55666666667788889999


Q ss_pred             ecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+ +++|.+++....  ......+..+.+++.++.|      +|+|+|+.||++..-..+..++|+|||+++.
T Consensus        83 e~~-g~sL~~ll~~~~~~l~~~~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~  155 (483)
T 3sv0_A           83 DLL-GPSLEDLFNFCSRKLSLKTVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKK  155 (483)
T ss_dssp             ECC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEE
T ss_pred             ECC-CCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCccee
Confidence            999 889999998543  3555666777888888887      4799999999921115778899999999873

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.82  E-value=5.2e-21  Score=148.27  Aligned_cols=142  Identities=21%  Similarity=0.244  Sum_probs=112.2

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeec------C
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLE------T   82 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~------~   82 (167)
                      ...++|.+.+.||+|+||.||++.. .+++.+|+|.+... .....+.+.+|+.++..++||||+++++++..      .
T Consensus        11 ~~~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~   90 (676)
T 3qa8_A           11 QTCGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPN   90 (676)
T ss_dssp             ------CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTT
T ss_pred             CCCCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCC
Confidence            3458899999999999999999984 57899999987653 34456678999999999999999999998765      5


Q ss_pred             CcceEEEecCCCCCHHHHHhhcC----cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccC---Cccccc
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQN----EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGL---APKRKK  149 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~----~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~---~~~l~d  149 (167)
                      +..++|+||+++|+|.+++....    ......+..+.+++.++.+      +|+|+++.||+   +..+.   .++++|
T Consensus        91 ~~~~LVmEy~~ggsL~~~L~~~~~~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NIL---l~~~g~~~~vKL~D  167 (676)
T 3qa8_A           91 DLPLLAMEYCEGGDLRKYLNQFENCCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIV---LQPGPQRLIHKIID  167 (676)
T ss_dssp             SSCCCEEECCSSCBHHHHHHSSSCTTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEE---EECCSSSCEEEECS
T ss_pred             CeEEEEEEeCCCCCHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeE---eecCCCceeEEEcc
Confidence            67899999999999999998754    2344566667788888877      57899999999   65443   378999


Q ss_pred             cchhhh
Q 040049          150 FEEEKW  155 (167)
Q Consensus       150 f~~~~~  155 (167)
                      ||.+..
T Consensus       168 FG~a~~  173 (676)
T 3qa8_A          168 LGYAKE  173 (676)
T ss_dssp             CCCCCB
T ss_pred             cccccc
Confidence            999874

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=99.82  E-value=3.4e-20  Score=133.51  Aligned_cols=139  Identities=19%  Similarity=0.202  Sum_probs=112.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe--CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCC------ceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML--ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYR------NVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~--~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~------~i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||++..  .+++.+|+|.+... ....+.+.+|+.++..++|+      +++++++++...+
T Consensus        12 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~~   90 (339)
T 1z57_A           12 LSARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNV-DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHHG   90 (339)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEETT
T ss_pred             ccCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecC-CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccCC
Confidence            457899999999999999999985  36889999988643 33456678888888877554      5999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc-------------
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK-------------  141 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~-------------  141 (167)
                      ..++|+||+ +++|.+++.....   .....+..+.+++.++.++      |+|++++||+   +..             
T Consensus        91 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil---~~~~~~~~~~~~~~~~  166 (339)
T 1z57_A           91 HICIVFELL-GLSTYDFIKENGFLPFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENIL---FVQSDYTEAYNPKIKR  166 (339)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESCCCEEEEEC----C
T ss_pred             cEEEEEcCC-CCCHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEE---EeccccccccCCcccc
Confidence            999999999 7899999987642   3455666778888888774      6899999999   554             


Q ss_pred             ------cCCccccccchhhh
Q 040049          142 ------GLAPKRKKFEEEKW  155 (167)
Q Consensus       142 ------~~~~~l~df~~~~~  155 (167)
                            +..++++|||.++.
T Consensus       167 ~~~~~~~~~~kl~Dfg~~~~  186 (339)
T 1z57_A          167 DERTLINPDIKVVDFGSATY  186 (339)
T ss_dssp             EEEEESCCCEEECCCSSCEE
T ss_pred             ccccccCCCceEeeCccccc
Confidence                  55789999999874

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=99.81  E-value=6.4e-20  Score=132.59  Aligned_cols=137  Identities=17%  Similarity=0.109  Sum_probs=105.6

Q ss_pred             hhcCCcccc-eecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcc
Q 040049           12 ATDHLNVNI-VLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVP   85 (167)
Q Consensus        12 ~~~~~~~~~-~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~   85 (167)
                      ..++|.+.+ .||+|+||.||++.. .+++.+|+|.+... .   .........++.++||||+++++++..    ....
T Consensus        26 ~~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~---~~~~e~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~  101 (336)
T 3fhr_A           26 VTDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS-P---KARQEVDHHWQASGGPHIVCILDVYENMHHGKRCL  101 (336)
T ss_dssp             GGGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS-H---HHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc-H---HHHHHHHHHHHhcCCCChHHHHHHHhhccCCCceE
Confidence            456788855 699999999999995 47899999988532 1   122222344566789999999999876    4458


Q ss_pred             eEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc---cCCccccccchh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK---GLAPKRKKFEEE  153 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~---~~~~~l~df~~~  153 (167)
                      ++|+||+++|+|.+++....   ......+..+.+++.++.+      +|+|+++.||+   +..   +..++++|||.+
T Consensus       102 ~lv~e~~~gg~L~~~l~~~~~~~l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIl---l~~~~~~~~~kl~Dfg~~  178 (336)
T 3fhr_A          102 LIIMECMEGGELFSRIQERGDQAFTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLL---YTSKEKDAVLKLTDFGFA  178 (336)
T ss_dssp             EEEEECCTTEEHHHHHHTC-CCCCBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ESCSSTTCCEEECCCTTC
T ss_pred             EEEEeccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEE---EEecCCCceEEEeccccc
Confidence            99999999999999998764   2455667778888888887      46899999999   543   455899999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       179 ~~  180 (336)
T 3fhr_A          179 KE  180 (336)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.81  E-value=3.5e-20  Score=138.21  Aligned_cols=145  Identities=19%  Similarity=0.198  Sum_probs=107.8

Q ss_pred             ccHHHHHhhhcCC-cccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeec
Q 040049            4 FSAKELDKATDHL-NVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLE   81 (167)
Q Consensus         4 ~~~~~~~~~~~~~-~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~   81 (167)
                      ++..++....+++ ...+.||+|+||+||.+...+|+.||+|.+...   ..+.+.+|+.++..+ +||||+++++++.+
T Consensus         4 ~~~p~~~~~l~~~~~~~~~LG~G~~g~V~~~~~~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~   80 (434)
T 2rio_A            4 ANIPNFEQSLKNLVVSEKILGYGSSGTVVFQGSFQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETT   80 (434)
T ss_dssp             ----CCSCSCSSCEEEEEEEEECSTTCEEEEEESSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEEC
T ss_pred             ccccchhhhhhheeeccCeEeeCCCeEEEEEEEECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEec
Confidence            3344444444444 446789999999998766667999999987532   345678899999876 89999999999999


Q ss_pred             CCcceEEEecCCCCCHHHHHhhcCcchH--------hhHHHHHHHHcCchh------hhhcccchhHHHHhhhc------
Q 040049           82 TEVPLLVYEYIPNGNLSDYLHEQNEDFV--------KDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK------  141 (167)
Q Consensus        82 ~~~~~lv~e~~~~g~L~~~i~~~~~~~~--------~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~------  141 (167)
                      .+..++++|||. |+|.+++........        ..+..+.+++.|+.+      +|+|+|++||+   +..      
T Consensus        81 ~~~~~lv~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NIL---l~~~~~~~~  156 (434)
T 2rio_A           81 DRFLYIALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNIL---VSTSSRFTA  156 (434)
T ss_dssp             SSEEEEEECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EECCHHHHS
T ss_pred             CCeEEEEEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEE---EecCccccc
Confidence            999999999996 599999986543111        224567888888887      46899999999   543      


Q ss_pred             -------cCCccccccchhhh
Q 040049          142 -------GLAPKRKKFEEEKW  155 (167)
Q Consensus       142 -------~~~~~l~df~~~~~  155 (167)
                             ...++|+|||.++.
T Consensus       157 ~~~~~~~~~~~kL~DFG~a~~  177 (434)
T 2rio_A          157 DQQTGAENLRILISDFGLCKK  177 (434)
T ss_dssp             CCTTCCCSCEEEECCCTTCEE
T ss_pred             ccccCCCceEEEEccccccee
Confidence                   34789999999873

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=99.81  E-value=3.6e-20  Score=136.15  Aligned_cols=121  Identities=19%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC--------CCceeeeeeeee---
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN--------YRNVVKLLGCCL---   80 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~--------h~~i~~l~~~~~---   80 (167)
                      .++|.+.+.||+|+||.||++.. .+++.+|+|.+.. .....+.+.+|+.+++.++        ||||+++++++.   
T Consensus        36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~-~~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~  114 (397)
T 1wak_A           36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKS-AEHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISG  114 (397)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-CHHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEE
T ss_pred             CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEec-CCcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecC
Confidence            46899999999999999999984 5789999999863 2334567889999988875        788999999987   


Q ss_pred             -cCCcceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh-------hhhcccchhHH
Q 040049           81 -ETEVPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIW  135 (167)
Q Consensus        81 -~~~~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~  135 (167)
                       .....++||||+ ++++.+.+....   ......+..+.+++.++.+       +|+|+|++||+
T Consensus       115 ~~~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIl  179 (397)
T 1wak_A          115 VNGTHICMVFEVL-GHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENIL  179 (397)
T ss_dssp             TTEEEEEEEECCC-CCBHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEE
T ss_pred             CCCceEEEEEecc-CccHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHee
Confidence             456789999999 557777766543   2455566667778777766       46789999999

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.81  E-value=4.7e-21  Score=137.21  Aligned_cols=143  Identities=18%  Similarity=0.250  Sum_probs=114.8

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      +++....++|.+.+.||+|+||.||++....  .+++|.+...  .....+.+.+|+.+++.++||||+++++++...+.
T Consensus        26 ~~~~i~~~~~~~~~~lg~G~~g~V~~~~~~~--~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~  103 (319)
T 2y4i_B           26 QEWDIPFEQLEIGELIGKGRFGQVYHGRWHG--EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSPPH  103 (319)
T ss_dssp             GGSSSCCSCEECCCBCCCSSSSEEEEEEESS--SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECSSC
T ss_pred             ccccCCHHHeEEeeEeccCCceEEEEEEEcC--eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecCCc
Confidence            4445566889999999999999999998643  4888877543  22333456789999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .++++||+++++|.+++....  ......+..+.+++.++.+      +|+|+++.||+   +. +..++++|||.++.
T Consensus       104 ~~iv~e~~~~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dlkp~NIl---~~-~~~~~l~Dfg~~~~  178 (319)
T 2y4i_B          104 LAIITSLCKGRTLYSVVRDAKIVLDVNKTRQIAQEIVKGMGYLHAKGILHKDLKSKNVF---YD-NGKVVITDFGLFSI  178 (319)
T ss_dssp             EEEECBCCCSEEHHHHTTSSCCCCCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCSTTEE---EC---CCEECCCSCCC-
T ss_pred             eEEEeecccCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhCCccccCCChhhEE---Ee-CCCEEEeecCCccc
Confidence            999999999999999998754  2456667778888888877      47899999998   54 56889999998663

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.81  E-value=4.2e-20  Score=137.71  Aligned_cols=139  Identities=18%  Similarity=0.179  Sum_probs=107.3

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ..+|...+.||+|+||.|+.....+++.||+|.+......   .+.+|+.+++.+ +||||+++++++.+.+..++++||
T Consensus        23 ~~~y~~~~~LG~G~~G~V~~~~~~~~~~vAvK~~~~~~~~---~~~~E~~~l~~l~~HpnIv~l~~~~~~~~~~~lv~E~   99 (432)
T 3p23_A           23 KISFCPKDVLGHGAEGTIVYRGMFDNRDVAVKRILPECFS---FADREVQLLRESDEHPNVIRYFCTEKDRQFQYIAIEL   99 (432)
T ss_dssp             TEEEEEEEEEEECGGGCEEEEEESSSSEEEEEEECTTTEE---ECHHHHHHHHHSCCCTTBCCEEEEEEETTEEEEEEEC
T ss_pred             cEEEecCCeeecCcCEEEEEEEEeCCeEEEEEEECHHHHH---HHHHHHHHHHhccCCCCcCeEEEEEecCCEEEEEEEC
Confidence            3468888999999999976544567899999988643322   345799999998 799999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhh--hccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL--LKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~--~~~~~~~l~df~~~~~  155 (167)
                      |.+ +|.+++.....  .....+..+.+++.|+.+      +|+|+|++||++..-  .....++|+|||+++.
T Consensus       100 ~~g-~L~~~l~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~  172 (432)
T 3p23_A          100 CAA-TLQEYVEQKDFAHLGLEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKK  172 (432)
T ss_dssp             CSE-EHHHHHHSSSCCCCSSCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEEC
T ss_pred             CCC-CHHHHHHhcCCCccchhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceee
Confidence            965 99999987643  223445667788888877      579999999982100  2234567999999874

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=99.80  E-value=4.4e-20  Score=135.53  Aligned_cols=140  Identities=24%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CC-----ceeeeeeeeecCC
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YR-----NVVKLLGCCLETE   83 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~-----~i~~l~~~~~~~~   83 (167)
                      ...++|.+.+.||+|+||.||+|.. .+++.||+|.+... ......+..|++++..+. |+     +++++.+++...+
T Consensus        51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~~  129 (382)
T 2vx3_A           51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNK-KAFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFRN  129 (382)
T ss_dssp             EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSS-HHHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEETT
T ss_pred             EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEecc-HHHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccCC
Confidence            3457899999999999999999985 47889999998632 333456677888877764 44     4999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhh--ccCCcccccc
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLL--KGLAPKRKKF  150 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~--~~~~~~l~df  150 (167)
                      ..++|+||+++ +|.+++....   ......+..+.+++.++.+        +|+|+|++||+   +.  ....++|+||
T Consensus       130 ~~~lv~e~~~~-~L~~~l~~~~~~~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIl---l~~~~~~~~kL~DF  205 (382)
T 2vx3_A          130 HLCLVFEMLSY-NLYDLLRNTNFRGVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENIL---LCNPKRSAIKIVDF  205 (382)
T ss_dssp             EEEEEEECCCC-BHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEE---ESSTTSCCEEECCC
T ss_pred             ceEEEEecCCC-CHHHHHhhcCcCCCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEE---EecCCCCcEEEEec
Confidence            99999999965 9999998754   2445555667777777665        57899999999   63  3567899999


Q ss_pred             chhhh
Q 040049          151 EEEKW  155 (167)
Q Consensus       151 ~~~~~  155 (167)
                      |.++.
T Consensus       206 G~a~~  210 (382)
T 2vx3_A          206 GSSCQ  210 (382)
T ss_dssp             TTCEE
T ss_pred             cCcee
Confidence            99863

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.80  E-value=1.4e-19  Score=129.48  Aligned_cols=140  Identities=15%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc-cc-HHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-GK-LDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-~~-~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+..... .. .+.+..+..+++.++||||+++++++...+..+++
T Consensus        23 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~lv  102 (318)
T 2dyl_A           23 EINDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITNTDVFIA  102 (318)
T ss_dssp             CGGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECSSEEEEE
T ss_pred             hhccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecCCcEEEE
Confidence            457889999999999999999995 4789999998865432 22 22344444567788999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+ ++.+..+.....  ......+..+.+++.++.+       +|+|+++.||+   +..+..++|+|||.+..
T Consensus       103 ~e~~-~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil---~~~~~~~kl~dfg~~~~  174 (318)
T 2dyl_A          103 MELM-GTCAEKLKKRMQGPIPERILGKMTVAIVKALYYLKEKHGVIHRDVKPSNIL---LDERGQIKLCDFGISGR  174 (318)
T ss_dssp             ECCC-SEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEE---ECTTSCEEECCCTTC--
T ss_pred             Eecc-CCcHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEE---ECCCCCEEEEECCCchh
Confidence            9999 546655554322  2445566667777777766       46799999999   78888999999999863

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=99.79  E-value=1.6e-19  Score=130.78  Aligned_cols=139  Identities=16%  Similarity=0.149  Sum_probs=110.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCC-cEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc------eeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADE-RIVAVKKSKVVGKGKLDEFINKVVILSQINYRN------VVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~-~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~------i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||++.. .++ ..+|+|.+... ....+.+.+|+.+++.++|++      ++.+.+++...+
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~-~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~~~   95 (355)
T 2eu9_A           17 LQERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNV-GKYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNFHG   95 (355)
T ss_dssp             ETTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEETT
T ss_pred             ecccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEccc-ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeeeCC
Confidence            457899999999999999999985 344 68999988632 334566788888888876655      899999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhh---------------
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQL---------------  139 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~---------------  139 (167)
                      ..++++||+ ++++.+.+....   ......+..+.+++.++.+      +|+|+++.||+   +               
T Consensus        96 ~~~lv~e~~-~~~l~~~l~~~~~~~~~~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIl---l~~~~~~~~~~~~~~~  171 (355)
T 2eu9_A           96 HMCIAFELL-GKNTFEFLKENNFQPYPLPHVRHMAYQLCHALRFLHENQLTHTDLKPENIL---FVNSEFETLYNEHKSC  171 (355)
T ss_dssp             EEEEEEECC-CCBHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ESCCCEEEEECCC-CC
T ss_pred             eEEEEEecc-CCChHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEE---Eecccccccccccccc
Confidence            999999999 557777777653   2445566677888888877      47899999999   5               


Q ss_pred             ----hccCCccccccchhhh
Q 040049          140 ----LKGLAPKRKKFEEEKW  155 (167)
Q Consensus       140 ----~~~~~~~l~df~~~~~  155 (167)
                          .....++|+|||.++.
T Consensus       172 ~~~~~~~~~~kl~Dfg~~~~  191 (355)
T 2eu9_A          172 EEKSVKNTSIRVADFGSATF  191 (355)
T ss_dssp             CEEEESCCCEEECCCTTCEE
T ss_pred             cccccCCCcEEEeecCcccc
Confidence                4567899999999874

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.79  E-value=9.7e-20  Score=128.77  Aligned_cols=134  Identities=11%  Similarity=0.046  Sum_probs=101.2

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCc------------------ccHHHHHHHHHHHhcCC
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGK------------------GKLDEFINKVVILSQIN   68 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~------------------~~~~~~~~e~~~~~~l~   68 (167)
                      .++......|.+.+.||+|+||.||+|...+++.+|+|.++....                  .....+.+|+.+++.++
T Consensus        83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~  162 (282)
T 1zar_A           83 HRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ  162 (282)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCeEEEecCEeccCCCceEEEEEeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc
Confidence            344555666777799999999999999987789999998754321                  12456889999999998


Q ss_pred             CCceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc
Q 040049           69 YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        69 h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~  142 (167)
                        | +++.+++. .+..++||||++|++|.+ +..     ......+.+++.++.+      +|+|+||.||+   +. +
T Consensus       163 --~-~~v~~~~~-~~~~~lvmE~~~g~~L~~-l~~-----~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NIL---l~-~  228 (282)
T 1zar_A          163 --G-LAVPKVYA-WEGNAVLMELIDAKELYR-VRV-----ENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVL---VS-E  228 (282)
T ss_dssp             --T-SSSCCEEE-EETTEEEEECCCCEEGGG-CCC-----SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE---EE-T
T ss_pred             --C-CCcCeEEe-ccceEEEEEecCCCcHHH-cch-----hhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEE---EE-C
Confidence              4 66666553 366799999999999988 432     1223455666666655      68999999999   66 7


Q ss_pred             CCccccccchhh
Q 040049          143 LAPKRKKFEEEK  154 (167)
Q Consensus       143 ~~~~l~df~~~~  154 (167)
                      ..++|+|||.|+
T Consensus       229 ~~vkl~DFG~a~  240 (282)
T 1zar_A          229 EGIWIIDFPQSV  240 (282)
T ss_dssp             TEEEECCCTTCE
T ss_pred             CcEEEEECCCCe
Confidence            889999999987

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.78  E-value=1.3e-19  Score=138.35  Aligned_cols=126  Identities=10%  Similarity=0.091  Sum_probs=92.5

Q ss_pred             ccceecccCceeEEEEEeCCCcEEEEEeccCCCcc--------cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           18 VNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG--------KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~--------~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..+.||+|+||.||++.. .+..+++|........        ..+.+.+|+++++.++||||+++..++...+..++||
T Consensus       340 ~~~~LG~G~fg~Vy~~~~-~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~~~~~lVm  418 (540)
T 3en9_A          340 PEHLIGKGAEADIKRDSY-LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDLDNKRIMM  418 (540)
T ss_dssp             --------CCEEEEEEEC-SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEETTTTEEEE
T ss_pred             CCCEEeeCCCEEEEEEEE-CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeCCccEEEE
Confidence            356899999999999954 5677888865332211        1345789999999999999996666666778889999


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ||+++++|.+++..       ....+.+++.++.+      +|+|+||+||+   +..  .++|+|||+++..
T Consensus       419 E~~~ggsL~~~l~~-------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NIL---l~~--~~kL~DFGla~~~  479 (540)
T 3en9_A          419 SYINGKLAKDVIED-------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFI---FDK--DLYIIDFGLGKIS  479 (540)
T ss_dssp             ECCCSEEHHHHSTT-------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEE---ESS--SEEECCCTTCEEC
T ss_pred             ECCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEE---ECC--eEEEEECccCEEC
Confidence            99999999999886       33455666666665      67999999998   555  8999999999853

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=99.78  E-value=1.4e-19  Score=132.18  Aligned_cols=139  Identities=16%  Similarity=0.160  Sum_probs=109.3

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-----------CCceeeeeeee
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-----------YRNVVKLLGCC   79 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-----------h~~i~~l~~~~   79 (167)
                      ..++|.+.+.||+|+||.||++.. .+++.+|+|.+.. .....+.+.+|+.+++.+.           ||||+++++++
T Consensus        17 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-~~~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~   95 (373)
T 1q8y_A           17 KDARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRG-DKVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHF   95 (373)
T ss_dssp             TTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECS-CHHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEE
T ss_pred             cCCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecC-CccchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHh
Confidence            356899999999999999999995 5789999998863 2334466788888888775           89999999998


Q ss_pred             ecCC----cceEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhh-----
Q 040049           80 LETE----VPLLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLL-----  140 (167)
Q Consensus        80 ~~~~----~~~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~-----  140 (167)
                      ...+    ..++++|++ +++|.+++....   ......+..+.+++.++.+       +|+|+|++||+   +.     
T Consensus        96 ~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIl---l~~~~~~  171 (373)
T 1q8y_A           96 NHKGPNGVHVVMVFEVL-GENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVL---MEIVDSP  171 (373)
T ss_dssp             EEEETTEEEEEEEECCC-CEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEE---EEEEETT
T ss_pred             hccCCCCceEEEEEecC-CCCHHHHHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeE---EeccCCC
Confidence            7654    688999999 889999998643   2444555666777777665       56799999999   53     


Q ss_pred             -ccCCccccccchhhh
Q 040049          141 -KGLAPKRKKFEEEKW  155 (167)
Q Consensus       141 -~~~~~~l~df~~~~~  155 (167)
                       ....++|+|||.++.
T Consensus       172 ~~~~~~kl~Dfg~a~~  187 (373)
T 1q8y_A          172 ENLIQIKIADLGNACW  187 (373)
T ss_dssp             TTEEEEEECCCTTCEE
T ss_pred             cCcceEEEcccccccc
Confidence             334789999999874

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.68  E-value=4.2e-17  Score=120.94  Aligned_cols=139  Identities=13%  Similarity=0.094  Sum_probs=95.5

Q ss_pred             hcCCcccceecccCceeEEEEE-eCCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCC-Cceee-------------
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGK---GKLDEFINKVVILSQINY-RNVVK-------------   74 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~-~~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h-~~i~~-------------   74 (167)
                      ...|...+.||+|+||.||++. ..+++.||+|.+.....   ...+.+.+|+.++..+.| ++...             
T Consensus        77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~  156 (413)
T 3dzo_A           77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL  156 (413)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred             ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence            3457788899999999999999 45799999998763322   235678899999998876 22111             


Q ss_pred             --------eeeeeec-----CCcceEEEecCCCCCHHHHHhhc------Cc--chHhhHHHHHHHHcCchh------hhh
Q 040049           75 --------LLGCCLE-----TEVPLLVYEYIPNGNLSDYLHEQ------NE--DFVKDVGFILSRRGGIPR------LKR  127 (167)
Q Consensus        75 --------l~~~~~~-----~~~~~lv~e~~~~g~L~~~i~~~------~~--~~~~~~~~~~~i~~~l~~------~h~  127 (167)
                              +...+..     ....+++++.+ +++|.+++...      ..  .....+..+.+++.++.|      +|+
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHr  235 (413)
T 3dzo_A          157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHT  235 (413)
T ss_dssp             EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECS
T ss_pred             cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence                    1111111     12346677655 66999988522      11  122333445788888877      479


Q ss_pred             cccchhHHHHhhhccCCccccccchhhh
Q 040049          128 KKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|++||+   +..+..++|+|||+++.
T Consensus       236 DiKp~NIL---l~~~~~~kL~DFG~a~~  260 (413)
T 3dzo_A          236 YLRPVDIV---LDQRGGVFLTGFEHLVR  260 (413)
T ss_dssp             CCCGGGEE---ECTTCCEEECCGGGCEE
T ss_pred             CcccceEE---EecCCeEEEEeccceee
Confidence            99999999   88888999999999863

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=99.64  E-value=1.7e-16  Score=110.74  Aligned_cols=129  Identities=12%  Similarity=0.032  Sum_probs=87.3

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcE--EEEEeccCCCccc------------------------HHHHHHHHHHHhcC
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERI--VAVKKSKVVGKGK------------------------LDEFINKVVILSQI   67 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~--~avk~~~~~~~~~------------------------~~~~~~e~~~~~~l   67 (167)
                      -|.+.+.||+|+||.||+|.. .+|+.  +|+|.++......                        ...+.+|++.+..+
T Consensus        48 ~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l  127 (258)
T 1zth_A           48 ITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLERA  127 (258)
T ss_dssp             EEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHHH
T ss_pred             chhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHHH
Confidence            467788999999999999996 68888  9999764331110                        13578899999988


Q ss_pred             CCCce--eeeeeeeecCCcceEEEecCCC-C----CHHHHHhhcCcchHhhHHHHHHHHcCch-------hhhhcccchh
Q 040049           68 NYRNV--VKLLGCCLETEVPLLVYEYIPN-G----NLSDYLHEQNEDFVKDVGFILSRRGGIP-------RLKRKKKKNK  133 (167)
Q Consensus        68 ~h~~i--~~l~~~~~~~~~~~lv~e~~~~-g----~L~~~i~~~~~~~~~~~~~~~~i~~~l~-------~~h~~~~~~~  133 (167)
                      .|+++  +..++.    +..++||||+.+ |    +|.+.....  ..........+++.++.       .+|+|++|.|
T Consensus       128 ~~~~i~~p~~~~~----~~~~lVmE~~g~~g~~~~~L~~~~~~~--~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~N  201 (258)
T 1zth_A          128 KEAGVSVPQPYTY----MKNVLLMEFIGEDELPAPTLVELGREL--KELDVEGIFNDVVENVKRLYQEAELVHADLSEYN  201 (258)
T ss_dssp             HHTTCCCCCEEEE----ETTEEEEECCEETTEECCBHHHHGGGG--GGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTS
T ss_pred             HhCCCCCCeEEEc----CCCEEEEEecCCCCCccccHHHHhhcc--ChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHH
Confidence            77754  233322    467899999942 3    666654331  11122333444544444       4678999999


Q ss_pred             HHHHhhhccCCccccccchhh
Q 040049          134 IWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus       134 ~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |+   +..  .++++|||.|.
T Consensus       202 IL---l~~--~~~liDFG~a~  217 (258)
T 1zth_A          202 IM---YID--KVYFIDMGQAV  217 (258)
T ss_dssp             EE---ESS--SEEECCCTTCE
T ss_pred             EE---EcC--cEEEEECcccc
Confidence            98   554  88999999986

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=99.46  E-value=1.5e-14  Score=105.72  Aligned_cols=149  Identities=7%  Similarity=0.011  Sum_probs=88.3

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--------------cccHHHHH--------HHHHHH
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--------------KGKLDEFI--------NKVVIL   64 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--------------~~~~~~~~--------~e~~~~   64 (167)
                      ..+.....-|.+..+||+|++|.||.|...+|+.+|+|..+...              ......+.        +|.+.+
T Consensus        88 ~~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL  167 (397)
T 4gyi_A           88 HTHAARKDVYSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM  167 (397)
T ss_dssp             HHHHHTTSCSEEEEEEEECSSEEEEEEECTTCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCEEEecCEeeeCCceEEEEEECCCCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            34445555689999999999999999998789999999754321              01112222        344444


Q ss_pred             hcCCCCceeeeeeeeecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCch------hhhhcccchhHHHHh
Q 040049           65 SQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIP------RLKRKKKKNKIWKQQ  138 (167)
Q Consensus        65 ~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~------~~h~~~~~~~~~~~~  138 (167)
                      ..+.++++.-..-+.  ....++||||++|++|.++...     +.+.....+++.++.      .+|+|+||.|||   
T Consensus       168 ~rL~~~gv~vp~p~~--~~~~~LVME~i~G~~L~~l~~~-----~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NIL---  237 (397)
T 4gyi_A          168 KALYEEGFPVPEPIA--QSRHTIVMSLVDALPMRQVSSV-----PDPASLYADLIALILRLAKHGLIHGDFNEFNIL---  237 (397)
T ss_dssp             HHHHHTTCSCCCEEE--EETTEEEEECCSCEEGGGCCCC-----SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE---
T ss_pred             HHHHhcCCCCCeeee--ccCceEEEEecCCccHhhhccc-----HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEE---
Confidence            444333321111111  1234799999999888654321     112223344444444      478999999999   


Q ss_pred             hhccCC----------ccccccchhh-----hhhhhhhhhhc
Q 040049          139 LLKGLA----------PKRKKFEEEK-----WRHTVLKRKEN  165 (167)
Q Consensus       139 ~~~~~~----------~~l~df~~~~-----~~~~i~hr~~~  165 (167)
                      +.++..          +.+.||+.+=     ....+..||.+
T Consensus       238 l~~dgd~~d~~~~~~~~~iID~~Q~V~~~hp~a~~~l~RDv~  279 (397)
T 4gyi_A          238 IREEKDAEDPSSITLTPIIIXFPQMVSMDHPNAEMYFDRDVQ  279 (397)
T ss_dssp             EEEEECSSCTTSEEEEEEECCCTTCEETTSTTHHHHHHHHHH
T ss_pred             EeCCCCcccccccccceEEEEeCCcccCCCCChHHHHHHHHH
Confidence            766542          5666888542     11245556543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=99.01  E-value=3.4e-10  Score=78.76  Aligned_cols=92  Identities=14%  Similarity=-0.025  Sum_probs=70.5

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcce
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPL   86 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~   86 (167)
                      .+......|.+....+.|+.+.||++.. .++.+++|............+.+|+.+++.+. +..+.+++++....+..|
T Consensus         8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~-~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~~~~~~   86 (263)
T 3tm0_A            8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSN   86 (263)
T ss_dssp             HHHHHHTTSEEEECCSCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEEE
T ss_pred             HHHHHhccceeEeeccCCCCCeEEEEEC-CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEecCCceE
Confidence            3445567798888889899999999874 36789999875421122345778888888874 667788898888888899


Q ss_pred             EEEecCCCCCHHHH
Q 040049           87 LVYEYIPNGNLSDY  100 (167)
Q Consensus        87 lv~e~~~~g~L~~~  100 (167)
                      ++|||++|.+|.+.
T Consensus        87 lv~e~i~G~~l~~~  100 (263)
T 3tm0_A           87 LLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEECCSSEEHHHH
T ss_pred             EEEEecCCeehhhc
Confidence            99999999888765

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=98.90  E-value=5.8e-10  Score=77.23  Aligned_cols=84  Identities=14%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc--eeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN--VVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~--i~~l~~~~~~~~~~~lv~   89 (167)
                      ....+.+....+.|..+.||++...+|..+++|.....   ....+..|+.+++.+.+.+  +.+++++....+..+++|
T Consensus        18 ~~~~~~~~~~~~gg~~~~v~~~~~~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~~~~~~~v~   94 (264)
T 1nd4_A           18 RLFGYDWAQQTIGCSDAAVFRLSAQGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLL   94 (264)
T ss_dssp             TTTTCEEEECSCTTSSCEEEEEECTTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEE
T ss_pred             hcCCCceEecccCCCCceEEEEecCCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccCCCCCEEEE
Confidence            33455554444466668999987666778999986533   2234667888888775434  456788877777889999


Q ss_pred             ecCCCCCHH
Q 040049           90 EYIPNGNLS   98 (167)
Q Consensus        90 e~~~~g~L~   98 (167)
                      ||++|.++.
T Consensus        95 e~i~G~~l~  103 (264)
T 1nd4_A           95 GEVPGQDLL  103 (264)
T ss_dssp             ECCSSEETT
T ss_pred             EecCCcccC
Confidence            999998774

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=98.07  E-value=4.8e-06  Score=60.36  Aligned_cols=81  Identities=9%  Similarity=0.090  Sum_probs=54.5

Q ss_pred             cccceecccCceeEEEEEeCCCcEEEEEecc--CCC-cccHHHHHHHHHHHhcCC--CCceeeeeeeeecC---CcceEE
Q 040049           17 NVNIVLGQGGQGTVHKGMLADERIVAVKKSK--VVG-KGKLDEFINKVVILSQIN--YRNVVKLLGCCLET---EVPLLV   88 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~--~~~-~~~~~~~~~e~~~~~~l~--h~~i~~l~~~~~~~---~~~~lv   88 (167)
                      ..++.++.|.++.+|+.... +..+++|...  ... ......+.+|..+++.+.  +..+.+++.++.+.   +..|+|
T Consensus        41 ~~~~~l~~G~sn~~y~v~~~-~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~~g~~~~v  119 (359)
T 3dxp_A           41 LSVEQFKGGQSNPTFKLVTP-GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESVIGRAFYI  119 (359)
T ss_dssp             CEEEECCC-CCSCEEEEECS-SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTTTSSCEEE
T ss_pred             ceEEEcCCcccceEEEEEEC-CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCccCCeEEE
Confidence            34577899999999998754 4577888664  221 122345778998888876  45567788887665   447899


Q ss_pred             EecCCCCCHH
Q 040049           89 YEYIPNGNLS   98 (167)
Q Consensus        89 ~e~~~~g~L~   98 (167)
                      |||++|..+.
T Consensus       120 me~v~G~~l~  129 (359)
T 3dxp_A          120 MEFVSGRVLW  129 (359)
T ss_dssp             EECCCCBCCC
T ss_pred             EEecCCeecC
Confidence            9999987663

>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*

Probab=97.76  E-value=0.00015  Score=50.28  Aligned_cols=78  Identities=14%  Similarity=0.140  Sum_probs=53.6

Q ss_pred             eecccCce-eEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           21 VLGQGGQG-TVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        21 ~ig~g~~g-~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      .+..|..+ .+|+... .++..+.+|.-.   ......+.+|...++.+. +--+.+++.++.+.+..++|||+++|.++
T Consensus        31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~---~~~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~~~~~lvme~l~G~~~  107 (272)
T 4gkh_A           31 RDNVGQSGATIYRLYGKPNAPELFLKHGK---GSVANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTA  107 (272)
T ss_dssp             EEECSSSSCEEEEEECCTTCCCEEEEEEE---THHHHHHHHHHHHHHHHTTTSCCCCEEEEEEETTEEEEEEECCCSEEH
T ss_pred             EccCCCcCCeEEEEEecCCCeEEEEEECC---CCCHhHHHHHHHHHHHhccCCCcCeEEEEEEECCeEEEEEEeeCCccc
Confidence            34445444 5888764 345678888654   233456778888887764 33356778888888889999999998776


Q ss_pred             HHHH
Q 040049           98 SDYL  101 (167)
Q Consensus        98 ~~~i  101 (167)
                      .+..
T Consensus       108 ~~~~  111 (272)
T 4gkh_A          108 FQVL  111 (272)
T ss_dssp             HHHH
T ss_pred             cccc
Confidence            6543

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=96.50  E-value=0.0028  Score=44.72  Aligned_cols=75  Identities=19%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-CCCc--eeeeeeeeecCC---cceEEEecC
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRN--VVKLLGCCLETE---VPLLVYEYI   92 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-~h~~--i~~l~~~~~~~~---~~~lv~e~~   92 (167)
                      ++.++.|....+|+..    ..+++|....  ......+.+|.++++.+ .+..  +...+......+   ..|+||+++
T Consensus        25 i~~~~~G~~n~v~~v~----~~~vlR~~~~--~~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~~~~~~~~~vm~~i   98 (304)
T 3sg8_A           25 IEISGEGNDCIAYEIN----RDFIFKFPKH--SRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPSETYQMSFAGFTKI   98 (304)
T ss_dssp             CCEEEECSSEEEEEST----TSEEEEEESS--HHHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCCSSCSCSCEEEECC
T ss_pred             eEecCCCCcceEEEEC----CEEEEEecCC--cchHHHHHHHHHHHHHHHhcCCCCCCceEeecCCCCCCCcceEEEccc
Confidence            4568889988888652    4577776432  23346788899988776 3332  233443333332   358899999


Q ss_pred             CCCCHHH
Q 040049           93 PNGNLSD   99 (167)
Q Consensus        93 ~~g~L~~   99 (167)
                      +|.++.+
T Consensus        99 ~G~~l~~  105 (304)
T 3sg8_A           99 KGVPLTP  105 (304)
T ss_dssp             CCEECCH
T ss_pred             CCeECCc
Confidence            9877764

>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}

Probab=96.42  E-value=0.013  Score=40.97  Aligned_cols=79  Identities=15%  Similarity=0.073  Sum_probs=54.2

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCC---ceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYR---NVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~---~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ....-+..+|.|..+.+|+.+..+|+.+.+|.-..........+..|++.|+.+.-.   -+.+++.+    +..+++||
T Consensus        15 ~~v~~v~~~g~G~~~~vyrv~l~DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~----~~~~lv~e   90 (288)
T 3f7w_A           15 REVAAVAERGHSHRWHLYRVELADGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGW----DDRTLAME   90 (288)
T ss_dssp             CCEEEEEEEEEETTEEEEEEEETTSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEE----ETTEEEEE
T ss_pred             CCeEEEEecCCCCCeEEEEEEECCCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEec----cCceEEEE
Confidence            345567789999999999999888999999976544444344567888887766321   22333333    23478999


Q ss_pred             cCCCCC
Q 040049           91 YIPNGN   96 (167)
Q Consensus        91 ~~~~g~   96 (167)
                      |++++.
T Consensus        91 ~l~~~~   96 (288)
T 3f7w_A           91 WVDERP   96 (288)
T ss_dssp             CCCCCC
T ss_pred             eecccC
Confidence            987654

>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}

Probab=95.64  E-value=0.067  Score=38.05  Aligned_cols=77  Identities=16%  Similarity=0.037  Sum_probs=57.0

Q ss_pred             cccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC---CCceeeeeeeeecCCcceEEEecCC
Q 040049           17 NVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN---YRNVVKLLGCCLETEVPLLVYEYIP   93 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~---h~~i~~l~~~~~~~~~~~lv~e~~~   93 (167)
                      .-.+.++.|....+|+... ++..+++|....   .....+..|...++.+.   ...+++++.+....+..+++|||++
T Consensus        39 ~~~~~l~gG~~n~~y~v~~-~~~~~vlK~~~~---~~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~g~~~lvme~l~  114 (312)
T 3jr1_A           39 KHKEKLYSGEMNEIWLIND-EVQTVFVKINER---SYRSMFRAEADQLALLAKTNSINVPLVYGIGNSQGHSFLLLEALN  114 (312)
T ss_dssp             CEEEEECCSSSSEEEEEES-SSCEEEEEEEEG---GGHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECSSEEEEEEECCC
T ss_pred             eeeEEeCCccceeeeEEEE-CCCeEEEEeCCc---ccHHHHHHHHHHHHHHHhhCCCCcceEEEEeecCCceEEEEEecc
Confidence            3446789999999999875 466788887542   23566778888777763   3556777777777788999999999


Q ss_pred             CCCH
Q 040049           94 NGNL   97 (167)
Q Consensus        94 ~g~L   97 (167)
                      |..+
T Consensus       115 G~~~  118 (312)
T 3jr1_A          115 KSKN  118 (312)
T ss_dssp             CCCC
T ss_pred             CCCC
Confidence            8764

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=95.58  E-value=0.083  Score=37.26  Aligned_cols=102  Identities=13%  Similarity=0.006  Sum_probs=61.5

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCC---ceeeeeeeee-cCCcceEEEecCCC
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYR---NVVKLLGCCL-ETEVPLLVYEYIPN   94 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~---~i~~l~~~~~-~~~~~~lv~e~~~~   94 (167)
                      ++.++.|....+|+.    +..+++|.-.  .......+.+|.+++..+.+.   .+...+.+.. ..+..+++|++++|
T Consensus        24 v~~l~~G~~n~v~~v----g~~~VlR~~~--~~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~~~g~~~~v~e~i~G   97 (306)
T 3tdw_A           24 VESLGEGFRNYAILV----NGDWVFRFPK--SQQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKRSDGNPFVGYRKVQG   97 (306)
T ss_dssp             EEEEEECSSEEEEEE----TTTEEEEEES--SHHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEECTTSCEEEEEECCCS
T ss_pred             eeecCCCcceeEEEE----CCEEEEEecC--CchHHHHHHHHHHHHHHHHhcCCCCCCCeEeecccCCCceEEEEeccCC
Confidence            456778888888876    4567777632  233446788999999988642   2445555553 34567899999999


Q ss_pred             CCHHHHHhhcCcchHhhHHHHHHHHcCchhhhh
Q 040049           95 GNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKR  127 (167)
Q Consensus        95 g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~  127 (167)
                      .++.+..-... ..........+++..++.+|.
T Consensus        98 ~~l~~~~~~~l-~~~~~~~~~~~lg~~La~LH~  129 (306)
T 3tdw_A           98 QILGEDGMAVL-PDDAKDRLALQLAEFMNELSA  129 (306)
T ss_dssp             EECHHHHHTTS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             eECchhhhhhC-CHHHHHHHHHHHHHHHHHHhc
Confidence            88866322211 112222334445555555554

>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*

Probab=95.13  E-value=0.047  Score=39.86  Aligned_cols=75  Identities=16%  Similarity=0.144  Sum_probs=47.0

Q ss_pred             cceecccCceeEEEEEe-CCCcEEEEEeccCCCc-------ccHHHHHHHHHHHhcCCC--Cce-eeeeeeeecCCcceE
Q 040049           19 NIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK-------GKLDEFINKVVILSQINY--RNV-VKLLGCCLETEVPLL   87 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~-------~~~~~~~~e~~~~~~l~h--~~i-~~l~~~~~~~~~~~l   87 (167)
                      .+.+|.|..+.||++.. .+++.+++|.......       .....+..|.+.++.+..  |.. ..++.+  +.+..++
T Consensus        35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~--d~~~~~l  112 (397)
T 2olc_A           35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  112 (397)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEE--cCCccEE
Confidence            46789999999999974 3467899997543211       123456678888776532  333 344433  3456789


Q ss_pred             EEecCCCC
Q 040049           88 VYEYIPNG   95 (167)
Q Consensus        88 v~e~~~~g   95 (167)
                      |||++++.
T Consensus       113 vmE~l~g~  120 (397)
T 2olc_A          113 VMEDLSHL  120 (397)
T ss_dssp             EECCCTTS
T ss_pred             EEEeCCCc
Confidence            99999764

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=94.05  E-value=0.089  Score=37.73  Aligned_cols=81  Identities=6%  Similarity=0.002  Sum_probs=50.6

Q ss_pred             ccee-cccCceeEEEEEeC-------CCcEEEEEeccCCC---cccHHHHHHHHHHHhcCC-C--CceeeeeeeeecC--
Q 040049           19 NIVL-GQGGQGTVHKGMLA-------DERIVAVKKSKVVG---KGKLDEFINKVVILSQIN-Y--RNVVKLLGCCLET--   82 (167)
Q Consensus        19 ~~~i-g~g~~g~v~~~~~~-------~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~-h--~~i~~l~~~~~~~--   82 (167)
                      .+.+ +.|....+|+....       ++..+++|......   ......+.+|..+++.+. +  ..+.+++.+..+.  
T Consensus        25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~  104 (357)
T 3ats_A           25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV  104 (357)
T ss_dssp             EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred             EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence            3566 78888889987643       25678888654321   001134566777777653 2  2355666666544  


Q ss_pred             -CcceEEEecCCCCCHHH
Q 040049           83 -EVPLLVYEYIPNGNLSD   99 (167)
Q Consensus        83 -~~~~lv~e~~~~g~L~~   99 (167)
                       +..+++||+++|.++.+
T Consensus       105 ~g~~~~v~e~l~G~~l~~  122 (357)
T 3ats_A          105 LGTPFFLMDYVEGVVPPD  122 (357)
T ss_dssp             TSSCEEEEECCCCBCCCB
T ss_pred             cCCceEEEEecCCCChhh
Confidence             34689999999877654

>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}

Probab=89.60  E-value=0.48  Score=33.08  Aligned_cols=71  Identities=13%  Similarity=0.079  Sum_probs=39.2

Q ss_pred             cceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-eeeeeeeecCCcceEEEecC-CCCC
Q 040049           19 NIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-VKLLGCCLETEVPLLVYEYI-PNGN   96 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-~~l~~~~~~~~~~~lv~e~~-~~g~   96 (167)
                      ++.++.|....+|+.     ..+++|.-....... ....+|...++.+...++ .+++..  +.+.-++++||+ +|.+
T Consensus        23 i~~l~gG~tN~~~~~-----~~~vlR~~~~~~~~~-~~r~~E~~~l~~l~~~g~~P~~~~~--~~~~~~~v~e~i~~g~~   94 (301)
T 3dxq_A           23 PLERLGGLTNLVFRA-----GDLCLRIPGKGTEEY-INRANEAVAAREAAKAGVSPEVLHV--DPATGVMVTRYIAGAQT   94 (301)
T ss_dssp             CEEEESCSSEEEEEE-----TTEEEEEECC----C-CCHHHHHHHHHHHHHTTSSCCEEEE--CTTTCCEEEECCTTCEE
T ss_pred             eeEcCCcccccccee-----eeEEEECCCCCccce-eCHHHHHHHHHHHHHcCCCCceEEE--ECCCCEEEEeecCCCcc
Confidence            677888888989987     456777654321111 112346666655432122 344443  343457899999 6544


Q ss_pred             H
Q 040049           97 L   97 (167)
Q Consensus        97 L   97 (167)
                      +
T Consensus        95 l   95 (301)
T 3dxq_A           95 M   95 (301)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}

Probab=87.31  E-value=1.8  Score=30.44  Aligned_cols=73  Identities=14%  Similarity=0.160  Sum_probs=38.2

Q ss_pred             ceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcC-----CCCceeeee-e--eeecCCcceEEEec
Q 040049           20 IVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQI-----NYRNVVKLL-G--CCLETEVPLLVYEY   91 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l-----~h~~i~~l~-~--~~~~~~~~~lv~e~   91 (167)
                      ..++.|....+|+....++ .+++|..... .   ..+..|..++..+     ..|.++... +  +....+..+++++|
T Consensus        38 ~~l~gG~~n~~~~v~~~~~-~~vlk~~~~~-~---~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~~  112 (346)
T 2q83_A           38 DVIQGNQMALVWKVHTDSG-AVCLKRIHRP-E---KKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYDW  112 (346)
T ss_dssp             EECC----CEEEEEEETTE-EEEEEEECSC-H---HHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEEC
T ss_pred             eeccccccCcEEEEEeCCC-CEEEEecCCC-H---HHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEEe
Confidence            3455567888998876444 5888877642 1   2333344444433     224433311 1  11235667899999


Q ss_pred             CCCCCH
Q 040049           92 IPNGNL   97 (167)
Q Consensus        92 ~~~g~L   97 (167)
                      ++|.++
T Consensus       113 i~G~~~  118 (346)
T 2q83_A          113 IEGRPF  118 (346)
T ss_dssp             CCCBCC
T ss_pred             ecCccC
Confidence            998543

>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A

Probab=86.78  E-value=0.061  Score=40.43  Aligned_cols=60  Identities=8%  Similarity=0.069  Sum_probs=16.2

Q ss_pred             ccceecccCceeEEEEEeCC-CcEEEE------EeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeee
Q 040049           18 VNIVLGQGGQGTVHKGMLAD-ERIVAV------KKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCL   80 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~~~-~~~~av------k~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~   80 (167)
                      +.+.+|   ||.||++.+.. ..+||+      |.....  .......+.+|..+++...|||+++.+++-.
T Consensus       146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~  214 (463)
T 3cxl_A          146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKV  214 (463)
T ss_dssp             STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEE
T ss_pred             ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEE
Confidence            345565   99999998532 356676      433321  1223346788888888899999999887663

>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}

Probab=84.51  E-value=8.5  Score=27.02  Aligned_cols=80  Identities=8%  Similarity=-0.003  Sum_probs=37.7

Q ss_pred             ceecccCcee-EEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC--CCceeeeeeeeecCCcceEEEecCCCCC
Q 040049           20 IVLGQGGQGT-VHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN--YRNVVKLLGCCLETEVPLLVYEYIPNGN   96 (167)
Q Consensus        20 ~~ig~g~~g~-v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~--h~~i~~l~~~~~~~~~~~lv~e~~~~g~   96 (167)
                      +.++.|.... +|+....++..+++|.........   +..|+.++..+.  .-.+.+++.+....  -++++|++.+.+
T Consensus        24 ~~l~gg~s~~~~~r~~~~~~~~~vlk~~~~~~~~~---~~~e~~~l~~L~~~g~~vP~v~~~d~~~--g~ll~e~l~~~~   98 (333)
T 3csv_A           24 TPLAGDASSRRYQRLRSPTGAKAVLMDWSPEEGGD---TQPFVDLAQYLRNLDISAPEIYAEEHAR--GLLLIEDLGDAL   98 (333)
T ss_dssp             CC--------CCEEEECTTCCEEEEEECCTTTTCC---SHHHHHHHHHHHHTTCBCCCEEEEETTT--TEEEECCCCSCB
T ss_pred             eECCCCCCCceEEEEEcCCCCeEEEEECCCCCCcc---ccHHHHHHHHHHhCCCCCCceeeecCCC--CEEEEeeCCCcc
Confidence            4455554433 556654336677777654332122   223444444432  12234445443222  378999998777


Q ss_pred             HHHHHhhc
Q 040049           97 LSDYLHEQ  104 (167)
Q Consensus        97 L~~~i~~~  104 (167)
                      +.+.+...
T Consensus        99 l~~~l~~~  106 (333)
T 3csv_A           99 FTEVINND  106 (333)
T ss_dssp             HHHHHHHC
T ss_pred             hHHHhcCC
Confidence            87776543

>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8

Probab=82.57  E-value=4.1  Score=30.15  Aligned_cols=73  Identities=19%  Similarity=0.187  Sum_probs=46.1

Q ss_pred             cceecccCceeEEEEEeCC--------CcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-eeeeeeeecCCcceEEE
Q 040049           19 NIVLGQGGQGTVHKGMLAD--------ERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-VKLLGCCLETEVPLLVY   89 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~--------~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-~~l~~~~~~~~~~~lv~   89 (167)
                      ++.++.|....+|++...+        +..+++|+-...  ...+.+..|..++..+...++ .++++.+.  +  .+++
T Consensus        78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~--~--g~v~  151 (429)
T 1nw1_A           78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS--G--GRLE  151 (429)
T ss_dssp             EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET--T--EEEE
T ss_pred             EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC--C--CEEE
Confidence            4567788888899988542        467888876321  122455678888777643233 45555542  2  3899


Q ss_pred             ecCCCCCH
Q 040049           90 EYIPNGNL   97 (167)
Q Consensus        90 e~~~~g~L   97 (167)
                      ||++|.++
T Consensus       152 e~l~G~~l  159 (429)
T 1nw1_A          152 EYIPSRPL  159 (429)
T ss_dssp             CCCCEEEC
T ss_pred             EEeCCccc
Confidence            99987554

>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*

Probab=81.61  E-value=3.5  Score=30.06  Aligned_cols=97  Identities=15%  Similarity=0.183  Sum_probs=51.3

Q ss_pred             cceecccCceeEEEEEeC--------CCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCc-eeeeeeeeecCCcceEEE
Q 040049           19 NIVLGQGGQGTVHKGMLA--------DERIVAVKKSKVVGKGKLDEFINKVVILSQINYRN-VVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~--------~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~-i~~l~~~~~~~~~~~lv~   89 (167)
                      ++.+..|-...+|++...        ++..+++|.-.. .........+|.++++.+...+ -.++++.+..    .+|+
T Consensus        55 v~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~----g~v~  129 (379)
T 3feg_A           55 VYPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE----GRLE  129 (379)
T ss_dssp             CEEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT----EEEE
T ss_pred             EEEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC----ccEE
Confidence            356777777888988753        246788886422 1223456668888887764222 2455555532    3899


Q ss_pred             ecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhhhh
Q 040049           90 EYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKR  127 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~h~  127 (167)
                      ||++|.+|..    ..   ........+++..++.+|.
T Consensus       130 e~i~G~~l~~----~~---l~~p~~~~~ia~~La~LH~  160 (379)
T 3feg_A          130 QYIPSRPLKT----QE---LREPVLSAAIATKMAQFHG  160 (379)
T ss_dssp             ECCSEEECCG----GG---GGCHHHHHHHHHHHHHHHT
T ss_pred             EEecCccCCh----hH---hCCHHHHHHHHHHHHHHhC
Confidence            9999865531    10   0111233445666666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	1e-19
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	2e-19
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	6e-19
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	7e-19
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	3e-18
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	6e-18
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	8e-18
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-17
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	1e-17
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	2e-17
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	4e-17
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	4e-17
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	5e-17
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	7e-17
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	1e-16
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	2e-16
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	2e-16
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	2e-16
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	2e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-16
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	6e-16
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	1e-15
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	2e-15
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	3e-15
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	3e-15
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-15
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	3e-15
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	5e-15
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	8e-15
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	1e-14
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	5e-14
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	8e-14
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	8e-14
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	2e-13
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-13
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	4e-13
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	6e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	8e-13
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	1e-12
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	1e-12
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	2e-12
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	4e-12
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	7e-12
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	1e-11
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-11
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	8e-11
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-10
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	2e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	3e-10
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	3e-10
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	4e-10
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	4e-10
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	7e-10
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	1e-09
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	2e-09
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-09
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	7e-09
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	3e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	5e-08
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	6e-08
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	4e-07
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	6e-07
d1zara2	191	d.144.1.9 (A:91-281) Rio2 serine protein kinase C-	1e-05

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (199), Expect = 1e-19
 Identities = 30/107 (28%), Positives = 54/107 (50%), Gaps = 6/107 (5%)

Query: 7   KELDKATDHLNV-NIVLGQGGQGTVHKGMLA---DERIVAVKK-SKVVGKGKLDEFINKV 61
           K+L    D+L + +I LG G  G+V +G+      +  VA+K   +   K   +E + + 
Sbjct: 1   KKLFLKRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREA 60

Query: 62  VILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            I+ Q++   +V+L+G C + E  +LV E    G L  +L  + E+ 
Sbjct: 61  QIMHQLDNPYIVRLIGVC-QAEALMLVMEMAGGGPLHKFLVGKREEI 106

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 2e-19
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 1/95 (1%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
             L     LG G  G V  G    +  VA+K  K  G    DEFI +  ++  +++  +V
Sbjct: 4   KDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKE-GSMSEDEFIEEAKVMMNLSHEKLV 62

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +L G C +     ++ EY+ NG L +YL E    F
Sbjct: 63  QLYGVCTKQRPIFIITEYMANGCLLNYLREMRHRF 97

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.6 bits (193), Expect = 6e-19
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
             L     +G G  G VH G   ++  VA+K  +  G    ++FI +  ++ ++++  +V
Sbjct: 5   SELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIRE-GAMSEEDFIEEAEVMMKLSHPKLV 63

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +L G CLE     LV+E++ +G LSDYL  Q 
Sbjct: 64  QLYGVCLEQAPICLVFEFMEHGCLSDYLRTQR 95

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.9 bits (194), Expect = 7e-19
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
           + L +   LG G  G V  G       VAVK  K  G    D F+ +  ++ Q+ ++ +V
Sbjct: 13  ETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLK-QGSMSPDAFLAEANLMKQLQHQRLV 71

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +L     +  +  ++ EY+ NG+L D+L   +
Sbjct: 72  RLYAVVTQEPI-YIITEYMENGSLVDFLKTPS 102

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.3 bits (190), Expect = 3e-18
 Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 1/95 (1%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
             + V   +G G  GTV+KG    +  V +         +L  F N+V +L +  + N++
Sbjct: 8   GQITVGQRIGSGSFGTVYKGKWHGDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNIL 67

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             +G         +V ++    +L  +LH     F
Sbjct: 68  LFMGYS-TAPQLAIVTQWCEGSSLYHHLHIIETKF 101

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 6e-18
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 4/93 (4%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
             L +   +G+G  G V  G       VAVK  K         F+ +  +++Q+ + N+V
Sbjct: 7   KELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIK--NDATAQAFLAEASVMTQLRHSNLV 63

Query: 74  KLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQN 105
           +LLG  +E +  L +V EY+  G+L DYL  + 
Sbjct: 64  QLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRG 96

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 76.2 bits (187), Expect = 8e-18
 Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 2/112 (1%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVIL 64
           K+ +   D  +   VLG G    V        +++VA+K  +K   +GK     N++ +L
Sbjct: 2   KQAEDIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVL 61

Query: 65  SQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
            +I + N+V L           L+ + +  G L D + E+     +D   ++
Sbjct: 62  HKIKHPNIVALDDIYESGGHLYLIMQLVSGGELFDRIVEKGFYTERDASRLI 113

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.0 bits (186), Expect = 1e-17
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 10/139 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKK-SKVVGKGKLDEFINKVVILSQ 66
           + L+    LG G  G V +              VAVK         + +  ++++ +LS 
Sbjct: 23  NRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSY 82

Query: 67  I-NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL 125
           + N+ N+V LLG C      L++ EY   G+L ++L  + + F+               L
Sbjct: 83  LGNHMNIVNLLGACTIGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELAL 142

Query: 126 KRKKKKNKIWKQQLLKGLA 144
             +   +  +  Q+ KG+A
Sbjct: 143 DLEDLLS--FSYQVAKGMA 159

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 19/110 (17%), Positives = 39/110 (35%), Gaps = 2/110 (1%)

Query: 9   LDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQ 66
           ++   D       LG G  G V K        ++A K     +     ++ I ++ +L +
Sbjct: 1   MELKDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHE 60

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
            N   +V   G         +  E++  G+L   L +      + +G + 
Sbjct: 61  CNSPYIVGFYGAFYSDGEISICMEHMDGGSLDQVLKKAGRIPEQILGKVS 110

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.6 bits (185), Expect = 2e-17
 Identities = 29/99 (29%), Positives = 58/99 (58%), Gaps = 6/99 (6%)

Query: 16  LNVNIVLGQGGQGTVHKGMLAD----ERIVAVKK-SKVVGKGKLDEFINKVVILSQINYR 70
           ++ N V+G+G  G V+ G L D    +   AVK  +++   G++ +F+ + +I+   ++ 
Sbjct: 29  VHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHP 88

Query: 71  NVVKLLGCCLETE-VPLLVYEYIPNGNLSDYLHEQNEDF 108
           NV+ LLG CL +E  PL+V  Y+ +G+L +++  +  + 
Sbjct: 89  NVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNP 127

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.3 bits (182), Expect = 4e-17
 Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            +GQG  GTV+  M +A  + VA+++  +  + K +  IN+++++ +    N+V  L   
Sbjct: 27  KIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSY 86

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNED 107
           L  +   +V EY+  G+L+D + E   D
Sbjct: 87  LVGDELWVVMEYLAGGSLTDVVTETCMD 114

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 29/162 (17%), Positives = 62/162 (38%), Gaps = 7/162 (4%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKK-SKVVGKGKLDEFIN 59
             L+   +++     +G+G  G V +             +VAVK   +        +F  
Sbjct: 6   LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQR 65

Query: 60  KVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRR 119
           +  ++++ +  N+VKLLG C   +   L++EY+  G+L+++L   +   V  +       
Sbjct: 66  EAALMAEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLST 125

Query: 120 GGIPRLKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWRHTVLK 161
                       +   +  + + +A       E K+ H  L 
Sbjct: 126 RARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLA 167

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 74.7 bits (183), Expect = 5e-17
 Identities = 18/89 (20%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG G  G VH+ +  A  R+   K              N++ I++Q+++  ++ L    
Sbjct: 36  ELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAF 95

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            +    +L+ E++  G L D +  ++   
Sbjct: 96  EDKYEMVLILEFLSGGELFDRIAAEDYKM 124

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 74.0 bits (181), Expect = 7e-17
 Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG G  G VH+    A     A K      +   +    ++  +S + +  +V L    
Sbjct: 33  ELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAF 92

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            +    +++YE++  G L + + +++   
Sbjct: 93  EDDNEMVMIYEFMSGGELFEKVADEHNKM 121

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (178), Expect = 1e-16
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 11/142 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADER------IVAVKK-SKVVGKGKLDEFINKVVILSQ 66
           ++L    VLG G  G V                VAVK   +     + +  ++++ +++Q
Sbjct: 37  ENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQ 96

Query: 67  I-NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL 125
           + ++ N+V LLG C  +    L++EY   G+L +YL  + E F +D     +++      
Sbjct: 97  LGSHENIVNLLGACTLSGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEE 156

Query: 126 KRKK---KKNKIWKQQLLKGLA 144
                  +    +  Q+ KG+ 
Sbjct: 157 DLNVLTFEDLLCFAYQVAKGME 178

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.7 bits (178), Expect = 2e-16
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 7/119 (5%)

Query: 2   QIFSAKELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEF 57
           ++F   + +K    L     +G G  G V+    + +  +VA+K    S      K  + 
Sbjct: 6   ELFFKDDPEKLFSDLRE---IGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDI 62

Query: 58  INKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           I +V  L ++ + N ++  GC L      LV EY            +      ++  + 
Sbjct: 63  IKEVRFLQKLRHPNTIQYRGCYLREHTAWLVMEYCLGSASDLLEVHKKPLQEVEIAAVT 121

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.4 bits (177), Expect = 2e-16
 Identities = 23/99 (23%), Positives = 41/99 (41%), Gaps = 4/99 (4%)

Query: 11  KATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQ 66
           K  +      +LG+G   TV     LA  R  A+K   K  ++ + K+     +  ++S+
Sbjct: 5   KRPEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSR 64

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +++   VKL     + E       Y  NG L  Y+ +  
Sbjct: 65  LDHPFFVKLYFTFQDDEKLYFGLSYAKNGELLKYIRKIG 103

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.5 bits (177), Expect = 2e-16
 Identities = 25/119 (21%), Positives = 56/119 (47%), Gaps = 14/119 (11%)

Query: 1   VQIFSAKELDKAT---------DHLNVNIVLGQGGQGTVHKGMLA----DERIVAVKK-S 46
           +  F+ ++ ++A            + +  V+G G  G V  G L      E  VA+K   
Sbjct: 4   IDPFTFEDPNEAVREFAKEIDISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLK 63

Query: 47  KVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
               + +  +F+++  I+ Q ++ NV+ L G   ++   +++ E++ NG+L  +L + +
Sbjct: 64  SGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMIITEFMENGSLDSFLRQND 122

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 2e-16
 Identities = 29/103 (28%), Positives = 51/103 (49%), Gaps = 6/103 (5%)

Query: 21  VLGQGGQGTVHKGMLADE---RIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKL 75
            LG G  GTV KG    +   + VAVK  K++       DE + +  ++ Q++   +V++
Sbjct: 14  ELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRM 73

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSR 118
           +G C E E  +LV E    G L+ YL +      K++  ++ +
Sbjct: 74  IGIC-EAESWMLVMEMAELGPLNKYLQQNRHVKDKNIIELVHQ 115

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 4e-16
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 2/103 (1%)

Query: 7   KELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILS 65
           ++L+   D   +   LG G  G V+K        + A K      + +L++++ ++ IL+
Sbjct: 6   RDLN-PEDFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILA 64

Query: 66  QINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
             ++ N+VKLL          ++ E+   G +   + E     
Sbjct: 65  SCDHPNIVKLLDAFYYENNLWILIEFCAGGAVDAVMLELERPL 107

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 70.9 bits (173), Expect = 6e-16
 Identities = 30/101 (29%), Positives = 53/101 (52%), Gaps = 4/101 (3%)

Query: 8   ELDKATDHLNVNIVLGQGGQGTVHKGMLAD-ERIVAVKKSKVVGKGKLDEFINKVVILSQ 66
           E+++    + +   LG G  G V++G+       VAVK  K     +++EF+ +  ++ +
Sbjct: 13  EMER--TDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLK-EDTMEVEEFLKEAAVMKE 69

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNED 107
           I + N+V+LLG C       ++ E++  GNL DYL E N  
Sbjct: 70  IKHPNLVQLLGVCTREPPFYIITEFMTYGNLLDYLRECNRQ 110

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 1e-15
 Identities = 24/95 (25%), Positives = 45/95 (47%), Gaps = 2/95 (2%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVV 73
           + L + + LGQG  G V  G       VA+K  K  G    + F+ +  ++ ++ +  +V
Sbjct: 17  ESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLK-PGTMSPEAFLQEAQVMKKLRHEKLV 75

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +L     E  +  +V EY+  G+L D+L  +   +
Sbjct: 76  QLYAVVSEEPI-YIVTEYMSKGSLLDFLKGETGKY 109

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.4 bits (169), Expect = 2e-15
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           +LG GG   VH    L   R VAVK               F  +    + +N+  +V + 
Sbjct: 14  ILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVY 73

Query: 77  GCCLETE----VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
                      +P +V EY+    L D +H +     K    ++
Sbjct: 74  DTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVI 117

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 3e-15
 Identities = 26/102 (25%), Positives = 50/102 (49%), Gaps = 7/102 (6%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML------ADERIVAVKK-SKVVGKGKLDEFINKVVILSQ 66
           + + ++  LGQG  G V++G+         E  VA+K  ++     +  EF+N+  ++ +
Sbjct: 20  EKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKE 79

Query: 67  INYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            N  +VV+LLG   + +  L++ E +  G+L  YL       
Sbjct: 80  FNCHHVVRLLGVVSQGQPTLVIMELMTRGDLKSYLRSLRPAM 121

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 3e-15
 Identities = 22/89 (24%), Positives = 42/89 (47%), Gaps = 4/89 (4%)

Query: 21  VLGQGGQGTVHKGML-ADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
            LG+G  G V+       + I+A+K   K+++   G   +   +V I S + + N+++L 
Sbjct: 13  PLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLY 72

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           G   +     L+ EY P G +   L + +
Sbjct: 73  GYFHDATRVYLILEYAPLGTVYRELQKLS 101

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 3e-15
 Identities = 28/142 (19%), Positives = 57/142 (40%), Gaps = 11/142 (7%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD---ERIVAVKK-SKVVGKGKLDEFINKVVILSQI-N 68
           + +    V+G+G  G V K  +         A+K+  +   K    +F  ++ +L ++ +
Sbjct: 10  NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGH 69

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPRLKR 127
           + N++ LLG C       L  EY P+GNL D+L +    +         S    +   + 
Sbjct: 70  HPNIINLLGACEHRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQL 129

Query: 128 KKKKNKIWKQQLLKGLAPKRKK 149
                  +   + +G+    +K
Sbjct: 130 LH-----FAADVARGMDYLSQK 146

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.6 bits (167), Expect = 3e-15
 Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 21  VLGQGGQGTVHKGML----ADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVV 73
            LG G  G V +G           VAVK      +     +D+FI +V  +  +++RN++
Sbjct: 15  KLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLI 74

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           +L G  L   +  +V E  P G+L D L +    F
Sbjct: 75  RLYGVVLTPPM-KMVTELAPLGSLLDRLRKHQGHF 108

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.9 bits (168), Expect = 5e-15
 Identities = 18/89 (20%), Positives = 42/89 (47%), Gaps = 2/89 (2%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG+G  G VH+ +  + ++    K  KV G  +      ++ IL+   +RN++ L    
Sbjct: 12  DLGRGEFGIVHRCVETSSKKTYMAKFVKVKGTDQ-VLVKKEISILNIARHRNILHLHESF 70

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
              E  ++++E+I   ++ + ++    + 
Sbjct: 71  ESMEELVMIFEFISGLDIFERINTSAFEL 99

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.7 bits (165), Expect = 8e-15
 Identities = 16/92 (17%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
            +G G  G   K    +D +I+  K      + + +    +++V +L ++ + N+V+   
Sbjct: 11  TIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYD 70

Query: 78  CCLETE--VPLLVYEYIPNGNLSDYLHEQNED 107
             ++       +V EY   G+L+  + +  ++
Sbjct: 71  RIIDRTNTTLYIVMEYCEGGDLASVITKGTKE 102

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 1e-14
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 16  LNVNIVLGQGGQGTVHKGMLADE-RIVAVKK--SKVVGKGKLDEFINKVVILSQINYRNV 72
           L  +I +G+G   TV+KG+  +    VA  +   + + K +   F  +  +L  + + N+
Sbjct: 11  LKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNI 70

Query: 73  VKLLGCCLET----EVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           V+       T    +  +LV E + +G L  YL       +K +    
Sbjct: 71  VRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVMKIKVLRSWC 118

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (159), Expect = 5e-14
 Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 2/86 (2%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
            LG+G  G V   +    E  VAVK           +    ++ I   +N+ NVVK  G 
Sbjct: 12  TLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGH 71

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQ 104
             E  +  L  EY   G L D +   
Sbjct: 72  RREGNIQYLFLEYCSGGELFDRIEPD 97

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.5 bits (159), Expect = 8e-14
 Identities = 19/103 (18%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 21  VLGQGGQGTVHKGMLAD-ERIVAVK---KSKVVGKGKLDEFINKVV---ILSQINYRNVV 73
           ++G+GG G V+    AD  ++ A+K   K ++  K      +N+ +   ++S  +   +V
Sbjct: 11  IIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIV 70

Query: 74  KLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
            +       +    + + +  G+L  +L +       D+ F  
Sbjct: 71  CMSYAFHTPDKLSFILDLMNGGDLHYHLSQHGVFSEADMRFYA 113

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 8e-14
 Identities = 21/100 (21%), Positives = 44/100 (44%), Gaps = 6/100 (6%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLADE----RIVAVKK-SKVVGKGKLDEFINKVVILSQIN 68
           + + +   +G+G  G VH+G+          VA+K           ++F+ + + + Q +
Sbjct: 7   ERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFD 66

Query: 69  YRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           + ++VKL+G   E  V  ++ E    G L  +L  +    
Sbjct: 67  HPHIVKLIGVITENPV-WIIMELCTLGELRSFLQVRKYSL 105

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 2e-13
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCL 80
            +G+G  G V +G       VAVK      + +      ++     + + N++  +    
Sbjct: 10  SIGKGRFGEVWRGKW-RGEEVAVKIFSS-REERSWFREAEIYQTVMLRHENILGFIAADN 67

Query: 81  ETE----VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL 125
           +         LV +Y  +G+L DYL+         +   LS   G+  L
Sbjct: 68  KDNGTWTQLWLVSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHL 116

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (155), Expect = 2e-13
 Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 6/101 (5%)

Query: 14  DHLNVNIVLGQGGQGTVHKGMLAD-----ERIVAVKK-SKVVGKGKLDEFINKVVILSQI 67
             +    V+G G  G V+KGML       E  VA+K       + +  +F+ +  I+ Q 
Sbjct: 7   SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF 66

Query: 68  NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           ++ N+++L G   + +  +++ EY+ NG L  +L E++ +F
Sbjct: 67  SHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEF 107

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.3 bits (153), Expect = 4e-13
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 14/141 (9%)

Query: 14  DHLNVNIVLGQGGQGTVHKGML--------ADERIVAVKK-SKVVGKGKLDEFINKVVIL 64
           D L +   LG+G  G V                  VAVK       +  L + I+++ ++
Sbjct: 13  DRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMM 72

Query: 65  SQI-NYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIP 123
             I  ++N++ LLG C +     ++ EY   GNL +YL  +    ++             
Sbjct: 73  KMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQL 132

Query: 124 RLKRKKKKNKIWKQQLLKGLA 144
             K           Q+ +G+ 
Sbjct: 133 SSKDLVS----CAYQVARGME 149

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (152), Expect = 6e-13
 Identities = 18/101 (17%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILS-QINYRNVVKL 75
           +LG+G  G V         +  A+K   K  V+    ++  + +  +LS    +  +  +
Sbjct: 9   MLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHM 68

Query: 76  LGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
                  E    V EY+  G+L  ++   ++  +    F  
Sbjct: 69  FCTFQTKENLFFVMEYLNGGDLMYHIQSCHKFDLSRATFYA 109

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.4 bits (151), Expect = 8e-13
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
            LG G  G VH      + R  A+K   K  VV   +++   ++ ++LS + +  ++++ 
Sbjct: 11  TLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMW 70

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           G   + +   ++ +YI  G L   L +          F  
Sbjct: 71  GTFQDAQQIFMIMDYIEGGELFSLLRKSQRFPNPVAKFYA 110

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 1e-12
 Identities = 18/102 (17%), Positives = 42/102 (41%), Gaps = 6/102 (5%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDE-----FINKVVILSQINYRNVVK 74
            LG+G   TV+K       +IVA+KK K+  + +  +      + ++ +L ++++ N++ 
Sbjct: 5   FLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIG 64

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
           LL          LV++++                   +   +
Sbjct: 65  LLDAFGHKSNISLVFDFMETDLEVIIKDNSLVLTPSHIKAYM 106

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.8 bits (149), Expect = 1e-12
 Identities = 38/140 (27%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 14  DHLNVNIVLGQGGQGTVHKGM------LADERIVAVKK-SKVVGKGKLDEFINKVVILSQ 66
           D L +   LG+G  G V +         A  R VAVK   +     +    ++++ IL  
Sbjct: 13  DRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIH 72

Query: 67  INYR-NVVKLLGCCLETEVPL-LVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR 124
           I +  NVV LLG C +   PL ++ E+   GNLS YL  +  +FV               
Sbjct: 73  IGHHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLT 132

Query: 125 LKRKKKKNKIWKQQLLKGLA 144
           L+        +  Q+ KG+ 
Sbjct: 133 LEHLIC----YSFQVAKGME 148

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 26/121 (21%), Positives = 47/121 (38%), Gaps = 10/121 (8%)

Query: 3   IFSAKELDKATDHLNVNIVLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGK---LD 55
           +F  + +D   D+ +    LG G    V K    +     A K   K +     +    +
Sbjct: 2   VFRQENVD---DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSRE 58

Query: 56  EFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFI 115
           +   +V IL +I + NV+ L          +L+ E +  G L D+L E+     ++    
Sbjct: 59  DIEREVSILKEIQHPNVITLHEVYENKTDVILILELVAGGELFDFLAEKESLTEEEATEF 118

Query: 116 L 116
           L
Sbjct: 119 L 119

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 19/87 (21%), Positives = 38/87 (43%), Gaps = 2/87 (2%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVKKSKV--VGKGKLDEFINKVVILSQINYRNVVKLLGC 78
            +G+G  G V+K         A+KK ++    +G     I ++ IL ++ + N+VKL   
Sbjct: 9   KIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDV 68

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQN 105
               +  +LV+E++           + 
Sbjct: 69  IHTKKRLVLVFEHLDQDLKKLLDVCEG 95

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 7e-12
 Identities = 16/91 (17%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVKLLGC 78
            +G+G  G V       ++  VA+KK S    +      + ++ IL +  + N++ +   
Sbjct: 15  YIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDI 74

Query: 79  C----LETEVPLLVYEYIPNGNLSDYLHEQN 105
                +E    + +  ++   +L   L  Q+
Sbjct: 75  IRAPTIEQMKDVYLVTHLMGADLYKLLKTQH 105

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.4 bits (143), Expect = 1e-11
 Identities = 28/94 (29%), Positives = 50/94 (53%), Gaps = 7/94 (7%)

Query: 21  VLGQGGQGTVHKGMLADE-----RIVAVKK-SKVVGKGKLDEFINKVVILSQINYRNVVK 74
           VLG G  GTV+KG+   E       VA+K+  +        E +++  +++ ++  +V +
Sbjct: 16  VLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCR 75

Query: 75  LLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           LLG CL + V  L+ + +P G L DY+ E  ++ 
Sbjct: 76  LLGICLTSTV-QLITQLMPFGCLLDYVREHKDNI 108

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 21/95 (22%), Positives = 41/95 (43%), Gaps = 11/95 (11%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK---------SKVVGKGKLDEFINKVVILSQIN-Y 69
           +LG+G    V + +     +  AVK          S    +   +  + +V IL +++ +
Sbjct: 10  ILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGH 69

Query: 70  RNVVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQ 104
            N+++L           LV++ +  G L DYL E+
Sbjct: 70  PNIIQLKDTYETNTFFFLVFDLMKKGELFDYLTEK 104

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 8e-11
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 4/100 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
           +LG+G  G V      A  R  A+K   K  ++ K ++   + +  +L    +  +  L 
Sbjct: 12  LLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALK 71

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
                 +    V EY   G L  +L  +     +   F  
Sbjct: 72  YAFQTHDRLCFVMEYANGGELFFHLSRERVFTEERARFYG 111

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 21  VLGQGGQGTVHKGMLADE-RIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
           V+G G  G V++  L D   +VA+KK     + K  E    + I+ ++++ N+V+L    
Sbjct: 27  VIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRFKNRE----LQIMRKLDHCNIVRLRYFF 82

Query: 80  LETEVP------LLVYEYIPNGNLSDYLHEQNE 106
             +          LV +Y+P        H    
Sbjct: 83  YSSGEKKDEVYLNLVLDYVPETVYRVARHYSRA 115

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 55.6 bits (133), Expect = 2e-10
 Identities = 18/100 (18%), Positives = 40/100 (40%), Gaps = 7/100 (7%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINY-RNVVKLLGC 78
            LG+G    V + + + +   V VK  K     K  +   ++ IL  +    N++ L   
Sbjct: 42  KLGRGKYSEVFEAINITNNEKVVVKILK---PVKKKKIKREIKILENLRGGPNIITLADI 98

Query: 79  CLE--TEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
             +  +  P LV+E++ N +         +  ++   + +
Sbjct: 99  VKDPVSRTPALVFEHVNNTDFKQLYQTLTDYDIRFYMYEI 138

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLDEFINKVVILSQINYRNVVKLL 76
            LG G  G V            A+K   K KVV   +++  +N+  IL  +N+  +VKL 
Sbjct: 48  TLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLE 107

Query: 77  GCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
               +     +V EY+  G +  +L    
Sbjct: 108 FSFKDNSNLYMVMEYVAGGEMFSHLRRIG 136

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.1 bits (132), Expect = 3e-10
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 11/92 (11%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQI-NYRNVVKLLGC 78
           VLG G  G V +      +   A+K  +        +   +V +  +     ++V+++  
Sbjct: 19  VLGLGINGKVLQIFNKRTQEKFALKMLQ-----DCPKARREVELHWRASQCPHIVRIVDV 73

Query: 79  C----LETEVPLLVYEYIPNGNLSDYLHEQNE 106
                   +  L+V E +  G L   + ++ +
Sbjct: 74  YENLYAGRKCLLIVMECLDGGELFSRIQDRGD 105

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 3/95 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK--KSKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
            +G+G  G V+K        +VA+K  +     +G     I ++ +L ++N+ N+VKLL 
Sbjct: 9   KIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLD 68

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                    LV+E++                   +
Sbjct: 69  VIHTENKLYLVFEFLHQDLKKFMDASALTGIPLPL 103

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (131), Expect = 4e-10
 Identities = 21/107 (19%), Positives = 43/107 (40%), Gaps = 11/107 (10%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK--SKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
            +GQG  G V K       + VA+KK   +   +G     + ++ IL  + + NVV L+ 
Sbjct: 17  KIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIE 76

Query: 78  CCLETEVP--------LLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
            C     P         LV+++  +       +   +  + ++  ++
Sbjct: 77  ICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVM 123

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 7e-10
 Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 9/97 (9%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVK---KSKVVGKGKLD---EFINKVVILSQIN--YRN 71
           +LG GG G+V+ G+ ++D   VA+K   K ++   G+L        +VV+L +++  +  
Sbjct: 11  LLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSG 70

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
           V++LL      +  +L+ E             +    
Sbjct: 71  VIRLLDWFERPDSFVLILERPEPVQDLFDFITERGAL 107

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 20/101 (19%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK--SKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
            +G G QG V        +R VA+KK       +        ++V++  +N++N++ LL 
Sbjct: 24  PIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLN 83

Query: 78  CCL------ETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
                    E +   LV E +          E + + +  +
Sbjct: 84  VFTPQKTLEEFQDVYLVMELMDANLCQVIQMELDHERMSYL 124

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.9 bits (126), Expect = 2e-09
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLG-C 78
            +G G  G ++ G  +A    VA+K   V  K K  +   +  I   +     +  +  C
Sbjct: 14  KIGSGSFGDIYLGTDIAAGEEVAIKLECV--KTKHPQLHIESKIYKMMQGGVGIPTIRWC 71

Query: 79  CLETEVPLLVYEYIPNGNLSDYLHEQN 105
             E +  ++V E +       +     
Sbjct: 72  GAEGDYNVMVMELLGPSLEDLFNFCSR 98

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 2e-09
 Identities = 20/99 (20%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLG 77
            +G+G  GTV K        IVA+K+ ++    +G     + ++ +L ++ ++N+V+L  
Sbjct: 9   KIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHD 68

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFIL 116
                +   LV+E+        +     +   + V   L
Sbjct: 69  VLHSDKKLTLVFEFCDQDLKKYFDSCNGDLDPEIVKSFL 107

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (122), Expect = 7e-09
 Identities = 20/127 (15%), Positives = 38/127 (29%), Gaps = 19/127 (14%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKK--SKVVGKGKLDEFINKVVILSQINYRNVVKLLG 77
            +G G  G V   +       VA+KK       +        ++ +L  + + NV+ LL 
Sbjct: 25  PVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLD 84

Query: 78  CCLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQ 137
                E      ++            +           L +   +   + +         
Sbjct: 85  VFTPDETLDDFTDFYLVMPFMGTDLGK-----------LMKHEKLGEDRIQF-----LVY 128

Query: 138 QLLKGLA 144
           Q+LKGL 
Sbjct: 129 QMLKGLR 135

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (117), Expect = 3e-08
 Identities = 21/113 (18%), Positives = 40/113 (35%), Gaps = 12/113 (10%)

Query: 4   FSAKELDKA----TDHLNVNIVLGQGGQGTVHKGM-LADERIVAVK--KSKVVGKGKLDE 56
           F  +EL+K      +       +G G  G+V           VAVK              
Sbjct: 4   FYRQELNKTIWEVPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKR 63

Query: 57  FINKVVILSQINYRNVVKLLGCC-----LETEVPLLVYEYIPNGNLSDYLHEQ 104
              ++ +L  + + NV+ LL        LE    + +  ++   +L++ +  Q
Sbjct: 64  TYRELRLLKHMKHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ 116

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 5e-08
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 9/94 (9%)

Query: 21  VLGQGGQGTVHKGMLA----DERIVAVK---KSKVVGKGK-LDEFINKVVILSQINYR-N 71
           VLG G  G V            ++ A+K   K+ +V K K  +    +  +L  I     
Sbjct: 31  VLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPF 90

Query: 72  VVKLLGCCLETEVPLLVYEYIPNGNLSDYLHEQN 105
           +V L           L+ +YI  G L  +L ++ 
Sbjct: 91  LVTLHYAFQTETKLHLILDYINGGELFTHLSQRE 124

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.9 bits (115), Expect = 6e-08
 Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 9/143 (6%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            LG G   TV     + +   VA+K  +   K   +   +++ +L ++N  +  K     
Sbjct: 20  KLGWGHFSTVWLAKDMVNNTHVAMKIVR-GDKVYTEAAEDEIKLLQRVNDADNTKEDSMG 78

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRLKRKKKKNKIWKQQL 139
               + LL +      N    +          +  I         L   K+      +QL
Sbjct: 79  ANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQ----ISKQL 134

Query: 140 LKGLAPKRKKFEEEKWRHTVLKR 162
           L GL    ++       HT +K 
Sbjct: 135 LLGLDYMHRRC---GIIHTDIKP 154

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 46.0 bits (108), Expect = 4e-07
 Identities = 12/89 (13%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 21  VLGQGGQGTVHKGM-LADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCC 79
            +G+G  G + +G  L + + VA+K      +    +  ++      +     +  +   
Sbjct: 12  RIGEGSFGVIFEGTNLLNNQQVAIKFEPR--RSDAPQLRDEYRTYKLLAGCTGIPNVYYF 69

Query: 80  LETEVPLLVYEYIPNGNLSDYLHEQNEDF 108
            +  +  ++   +   +L D L      F
Sbjct: 70  GQEGLHNVLVIDLLGPSLEDLLDLCGRKF 98

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (107), Expect = 6e-07
 Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 21 VLGQGGQGTVHKG--MLADERIVAVK--KSKVVGKGKLDEFINKVVILSQI---NYRNVV 73
           +G+G  G V K   +    R VA+K  + +   +G     I +V +L  +    + NVV
Sbjct: 14 EIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVV 73

Query: 74 KLLGCCLETEVPLLVYEYIPNGNL 97
          +L   C  +         +   ++
Sbjct: 74 RLFDVCTVSRTDRETKLTLVFEHV 97

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]} Length = 191

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 21  VLGQGGQGTVHKGMLADERIVAVK----------KSKVVGKGKLDEFINKVVILSQINYR 70
           ++G+G +  V            VK          K K         F    +  ++  +R
Sbjct: 7   LMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFR 66

Query: 71  NVVKLLGCC----LETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDV 112
            + KL G         E   ++ E I    L     E  ++ +  +
Sbjct: 67  ALQKLQGLAVPKVYAWEGNAVLMELIDAKELYRVRVENPDEVLDMI 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	99.97
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	99.97
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	99.97
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	99.97
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	99.97
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	99.97
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	99.96
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	99.96
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	99.96
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	99.96
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	99.96
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	99.96
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	99.96
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	99.96
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	99.96
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	99.96
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	99.96
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	99.96
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	99.96
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	99.96
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	99.96
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	99.95
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	99.95
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	99.95
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	99.95
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	99.95
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	99.95
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	99.95
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	99.95
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	99.94
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	99.94
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	99.94
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.94
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	99.94
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	99.94
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	99.94
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	99.94
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	99.94
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	99.94
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	99.93
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	99.93
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	99.93
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	99.93
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	99.93
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	99.93
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	99.93
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	99.92
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	99.92
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	99.92
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	99.91
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	99.91
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	99.91
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	99.91
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	99.9
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	99.89
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	99.89
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.88
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	99.88
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.72
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	99.7
d1j7la_	263	Type IIIa 3',5"-aminoglycoside phosphotransferase	97.94
d1nd4a_	255	Aminoglycoside 3'-phosphotransferase IIa (Kanamyci	97.33
d2pula1	392	Methylthioribose kinase MtnK {Bacillus subtilis [T	96.1
d1zyla1	325	RdoA {Escherichia coli [TaxId: 562]}	88.68
d2ppqa1	316	Homoserine kinase ThrB {Agrobacterium tumefaciens	87.36

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.1e-31  Score=189.08  Aligned_cols=139  Identities=23%  Similarity=0.243  Sum_probs=124.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      ++|.+.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+.+++.++||||+++++++.+++.+|+|||||
T Consensus        20 ~~Y~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmEy~   99 (293)
T d1yhwa1          20 KKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVGDELWVVMEYL   99 (293)
T ss_dssp             TTBCSCEECCCSSSCEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cccEEEEEEecCcCcEEEEEEECCCCCEEEEEEEecccChHHHHHHHHHHHHHhCCCCCEeeEeEEEEECCEEEEEEEec
Confidence            4799999999999999999994 679999999987665566788999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||+|.+++.+...........+.|++.|+.|+      |+|+||+||+   +..+..++|+|||.|+.
T Consensus       100 ~gg~L~~~~~~~~l~~~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NIL---l~~~~~vkl~DFG~a~~  165 (293)
T d1yhwa1         100 AGGSLTDVVTETCMDEGQIAAVCRECLQALEFLHSNQVIHRDIKSDNIL---LGMDGSVKLTDFGFCAQ  165 (293)
T ss_dssp             TTCBHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             CCCcHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHCCCcccCCcHHHeE---ECCCCcEeeccchhhee
Confidence            999999998876656667777888999999884      7999999999   77888999999999874

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.4e-31  Score=188.21  Aligned_cols=146  Identities=23%  Similarity=0.317  Sum_probs=124.3

Q ss_pred             HHHHHhhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc
Q 040049            6 AKELDKATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEV   84 (167)
Q Consensus         6 ~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~   84 (167)
                      ++++....++|.+.+.||+|+||.||+|.+ .+++.||+|.++.. ....+.+.+|+.+++.++||||+++++++.+.+.
T Consensus         9 ~~~wei~~~~~~~~~~iG~G~fg~Vy~a~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~   87 (287)
T d1opja_           9 YDKWEMERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKED-TMEVEEFLKEAAVMKEIKHPNLVQLLGVCTREPP   87 (287)
T ss_dssp             CCTTBCCGGGEEEEEETTTTTTSSEEEEEEGGGTEEEEEEECCTT-CSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSS
T ss_pred             CcccEecHHHeEEeeEEeeCCCeEEEEEEECCCCeEEEEEEECCc-cchHHHHHHHHHHHHhCCCCCEecCCccEeeCCe
Confidence            344555678899999999999999999985 46899999998643 4456789999999999999999999999999999


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc---chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE---DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~---~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      .+++||||++|+|.+++.....   ........+.+++.|+.|      +|+|+|++||+   ++.+..+||+|||+|+.
T Consensus        88 ~~iv~E~~~~g~l~~~l~~~~~~~~~~~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NIL---l~~~~~~Kl~DFG~a~~  164 (287)
T d1opja_          88 FYIITEFMTYGNLLDYLRECNRQEVSAVVLLYMATQISSAMEYLEKKNFIHRDLAARNCL---VGENHLVKVADFGLSRL  164 (287)
T ss_dssp             CEEEEECCTTCBHHHHHHHSCTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCEEECCCCCTTT
T ss_pred             eEEEeecccCcchHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHCCcccCccccCeEE---ECCCCcEEEccccceee
Confidence            9999999999999999976432   334455567789999888      47999999999   88889999999999985

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.2e-31  Score=187.04  Aligned_cols=140  Identities=22%  Similarity=0.242  Sum_probs=119.0

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|++.+.||+|+||.||+|.. .+++.+|+|.+.... ....+.+.+|+.+++.++||||+++++++.+++.+|+|||
T Consensus         4 ~~dy~~~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~~~~~~~~~~~~~ivmE   83 (271)
T d1nvra_           4 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREGNIQYLFLE   83 (271)
T ss_dssp             TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CcceEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHhCCCCCEeeEeeeeccCceeEEEEe
Confidence            36799999999999999999995 579999999876543 2334568899999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||++|+|.+++..... +....+..+.|++.|+.|      +|||+||+||+   +..+..+||+|||+|+.
T Consensus        84 y~~gg~L~~~l~~~~~l~e~~~~~i~~qi~~al~ylH~~~IiHrDiKp~NIL---l~~~~~~KL~DFG~a~~  152 (271)
T d1nvra_          84 YCSGGELFDRIEPDIGMPEPDAQRFFHQLMAGVVYLHGIGITHRDIKPENLL---LDERDNLKISDFGLATV  152 (271)
T ss_dssp             CCTTEEGGGGSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             ccCCCcHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCccCcccHHHEE---ECCCCCEEEccchhhee
Confidence            9999999999986543 556667778899999988      47999999999   88888999999999974

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.5e-31  Score=188.95  Aligned_cols=141  Identities=17%  Similarity=0.146  Sum_probs=123.1

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ..++|++.+.||+|+||.||+|.. .+++.+|+|.++.. .......+.+|+.+++.++||||+++++++.+++.+++||
T Consensus         4 ~~d~y~~~~~iG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~iVm   83 (322)
T d1s9ja_           4 KDDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSDGEISICM   83 (322)
T ss_dssp             CGGGEEEEEEEECCSSCCEEEEEETTTTEEEEEEEEECCCCTTHHHHHHHHGGGGGGCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             CccCCEEEEEEecCCCeEEEEEEECCCCcEEEEEEEChhhCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEE
Confidence            467899999999999999999995 57899999987654 3445678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+++|+|.+++.+... .....+..+.|++.|+.|       +|||+||+||+   +..+..+||+|||+|+.
T Consensus        84 Ey~~gg~L~~~l~~~~~l~~~~~~~~~~qil~aL~yLH~~~~IiHRDiKP~NIL---l~~~~~vkl~DFGla~~  154 (322)
T d1s9ja_          84 EHMDGGSLDQVLKKAGRIPEQILGKVSIAVIKGLTYLREKHKIMHRDVKPSNIL---VNSRGEIKLCDFGVSGQ  154 (322)
T ss_dssp             ECCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEE---ECTTCCEEECCCCCCHH
T ss_pred             EcCCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCEEccccCHHHee---ECCCCCEEEeeCCCccc
Confidence            99999999999987643 555666778888888877       46899999999   88889999999999984

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-30  Score=180.88  Aligned_cols=140  Identities=24%  Similarity=0.379  Sum_probs=118.9

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.+.||+|+||.||+|.+.+++.||+|.+... ....+.+.+|+.+++.++||||+++++++..++..++||||+
T Consensus         4 p~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~lv~E~~   82 (263)
T d1sm2a_           4 PSELTFVQEIGSGQFGLVHLGYWLNKDKVAIKTIREG-AMSEEDFIEEAEVMMKLSHPKLVQLYGVCLEQAPICLVFEFM   82 (263)
T ss_dssp             CSCEEEEEEEECCSSCCEEEEEETTTEEEEEEECCSS-SSCHHHHHHHHHHHHHCCCTTBCCEEEEECSSSSCEEEEECC
T ss_pred             hHHcEEEEEEeeCCCeEEEEEEECCCCEEEEEEECCC-cCcHHHHHHHHHHHHhcCCCCcccccceeccCCceEEEEEec
Confidence            4689999999999999999999878889999998643 344578999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ++|+|.+++.....  ........+.+++.|+.|      +|+|+|+.||+   ++++..+||+|||+|+..
T Consensus        83 ~~g~L~~~l~~~~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nil---l~~~~~~Kl~DFGla~~~  151 (263)
T d1sm2a_          83 EHGCLSDYLRTQRGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCL---VGENQVIKVSDFGMTRFV  151 (263)
T ss_dssp             TTCBHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEE---ECGGGCEEECSCC-----
T ss_pred             CCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhhee---ecCCCCeEecccchheec
Confidence            99999999876543  445566678899999988      57999999999   888999999999999843

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-31  Score=186.06  Aligned_cols=139  Identities=19%  Similarity=0.192  Sum_probs=122.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      +.|++.+.||+|+||.||+|.. .++..+|+|.+........+.+.+|+.+++.++||||+++++++.+++.+++|||||
T Consensus        12 d~Y~i~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~lvmEy~   91 (288)
T d2jfla1          12 DFWEIIGELGDGAFGKVYKAQNKETSVLAAAKVIDTKSEEELEDYMVEIDILASCDHPNIVKLLDAFYYENNLWILIEFC   91 (288)
T ss_dssp             GTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECSSSGGGGGTHHHHHHHHHCCCTTBCCEEEEEEETTEEEEEEECC
T ss_pred             cCeEEeEEEeeCCCcEEEEEEECCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEeeCCeEEEEEecC
Confidence            5689999999999999999995 578999999987666666778999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+++.+...  ........+.|++.|+.|+      |+|+||+||+   +..+..+||+|||+|+.
T Consensus        92 ~~g~L~~~~~~~~~~l~e~~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIl---l~~~~~~Kl~DFG~a~~  159 (288)
T d2jfla1          92 AGGAVDAVMLELERPLTESQIQVVCKQTLDALNYLHDNKIIHRDLKAGNIL---FTLDGDIKLADFGVSAK  159 (288)
T ss_dssp             TTEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             CCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEeecChhhee---ECCCCCEEEEechhhhc
Confidence            99999999876432  4555667788999999885      7999999999   88888999999999864

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1e-30  Score=181.53  Aligned_cols=140  Identities=20%  Similarity=0.244  Sum_probs=121.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+++.+|+|
T Consensus         5 l~dy~i~~~iG~G~fg~Vy~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~iv   84 (263)
T d2j4za1           5 LEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDATRVYLI   84 (263)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             hhHeEEEEEEecCCCcEEEEEEECCCCcEEEEEEEchHHccChHHHHHHHHHHHHHHhcCCCCCCeEEEEEEECCEEEEE
Confidence            35799999999999999999995 57899999987532   234567788999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||++|+|.+.+..... ........+.|++.|+.|      +|+|+||+|++   +.++..+|++|||.|+.
T Consensus        85 mEy~~~g~L~~~l~~~~~l~e~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nil---l~~~~~~kl~DFG~a~~  155 (263)
T d2j4za1          85 LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLL---LGSAGELKIADFGWSVH  155 (263)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEECCCCSCSC
T ss_pred             EeecCCCcHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHCCeeeeeeccccce---ecCCCCEeecccceeee
Confidence            999999999999987654 556677778899999988      57999999999   88888999999999874

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=99.96  E-value=3.1e-30  Score=185.77  Aligned_cols=140  Identities=18%  Similarity=0.211  Sum_probs=121.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|.+......+...+.+|+.+++.++||||+++++++.+++.+|+||||
T Consensus        28 ~d~Y~i~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  107 (352)
T d1koba_          28 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFEDKYEMVLILEF  107 (352)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEECSSEEEEEEEC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEECCcchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            35799999999999999999994 57999999998766555667788999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhh--ccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLL--KGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~--~~~~~~l~df~~~~~  155 (167)
                      |+||+|.+.+.....  .....+..+.+++.|+.|      +|||+||+||+   +.  ....++|+|||+|+.
T Consensus       108 ~~gg~L~~~~~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NIL---l~~~~~~~vkL~DFGla~~  178 (352)
T d1koba_         108 LSGGELFDRIAAEDYKMSEAEVINYMRQACEGLKHMHEHSIVHLDIKPENIM---CETKKASSVKIIDFGLATK  178 (352)
T ss_dssp             CCCCBHHHHTTCTTCCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSTTCCCEEECCCTTCEE
T ss_pred             CCCChHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCCeeeccccccccc---ccccCCCeEEEeeccccee
Confidence            999999998876543  556667778899999988      47999999998   55  457889999999874

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-30  Score=179.44  Aligned_cols=140  Identities=17%  Similarity=0.234  Sum_probs=114.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec--CCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE--TEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~--~~~~~l   87 (167)
                      .++|++.+.||+|+||.||+|.. .+|+.||+|.+...  +....+.+.+|+.+++.++||||+++++++.+  .+.+|+
T Consensus         3 ~edy~~~~~iG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~i   82 (269)
T d2java1           3 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDRTNTTLYI   82 (269)
T ss_dssp             GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTSCCCTTBCCEEEEEEC----CEEE
T ss_pred             chhCEEeEEEecCCCeEEEEEEECCCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEeCCCCEEEE
Confidence            46899999999999999999984 57899999987654  33445678999999999999999999999865  456899


Q ss_pred             EEecCCCCCHHHHHhhcC-----cchHhhHHHHHHHHcCchh-----------hhhcccchhHHHHhhhccCCccccccc
Q 040049           88 VYEYIPNGNLSDYLHEQN-----EDFVKDVGFILSRRGGIPR-----------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-----~~~~~~~~~~~~i~~~l~~-----------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                      |||||++|+|.+++.+..     .+....+..+.|++.|+.|           +|||+||+||+   ++.+..++|+|||
T Consensus        83 vmEy~~~g~L~~~i~~~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIl---l~~~~~vkl~DFG  159 (269)
T d2java1          83 VMEYCEGGDLASVITKGTKERQYLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVF---LDGKQNVKLGDFG  159 (269)
T ss_dssp             EEECCTTEEHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEE---ECTTSCEEECCHH
T ss_pred             EEecCCCCcHHHHHHhccccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcC---cCCCCcEEEeecc
Confidence            999999999999987532     2456677778888888866           48999999999   8888999999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      .|+.
T Consensus       160 ~a~~  163 (269)
T d2java1         160 LARI  163 (269)
T ss_dssp             HHHH
T ss_pred             ceee
Confidence            9984

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=7.5e-31  Score=185.94  Aligned_cols=146  Identities=19%  Similarity=0.187  Sum_probs=113.7

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ...+.|.+.+.||+|+||.||+|.. .+++.||+|.+.... ......+.+|+.+++.++||||+++++++.+++.+|+|
T Consensus         6 di~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~lv   85 (307)
T d1a06a_           6 DIRDIYDFRDVLGTGAFSEVILAEDKRTQKLVAIKCIAKKALEGKEGSMENEIAVLHKIKHPNIVALDDIYESGGHLYLI   85 (307)
T ss_dssp             CGGGTEEEEEESBSGGGGGEEEEEETTTCCEEEEEEEEC----------CHHHHHHHTCCCTTBCCEEEEEECSSEEEEE
T ss_pred             CCccceEEEEEEeeccCeEEEEEEECCCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEE
Confidence            3456799999999999999999995 578999999876432 23345678999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      ||||+||+|.+++..... +.......+.+++.|+.|      +|+|+||+|+++....++..++++|||+|+..
T Consensus        86 mE~~~gg~L~~~l~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~  160 (307)
T d1a06a_          86 MQLVSGGELFDRIVEKGFYTERDASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKME  160 (307)
T ss_dssp             ECCCCSCBHHHHHHTCSCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------
T ss_pred             EeccCCCcHHHhhhcccCCCHHHHHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEc
Confidence            999999999999987643 566677778899999988      47999999999433345678999999999853

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-30  Score=181.90  Aligned_cols=140  Identities=19%  Similarity=0.200  Sum_probs=121.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++.+++.+|+|
T Consensus         7 p~dy~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~~~~~~iv   86 (288)
T d1uu3a_           7 PEDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQDDEKLYFG   86 (288)
T ss_dssp             GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCSTTBCCEEEEEECSSEEEEE
T ss_pred             CCCCEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHHcCCCCeeEEEEEEEECCEEEEE
Confidence            36799999999999999999995 57999999987532   234567799999999999999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+||+|.+++...+. +....+..+.+++.|+.|      +|||+|++||+   +..+..++++|||+|+.
T Consensus        87 mEy~~gg~L~~~~~~~~~l~e~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIl---l~~~~~vkl~DFG~a~~  157 (288)
T d1uu3a_          87 LSYAKNGELLKYIRKIGSFDETCTRFYTAEIVSALEYLHGKGIIHRDLKPENIL---LNEDMHIQITDFGTAKV  157 (288)
T ss_dssp             ECCCTTEEHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEccCCCCHHHhhhccCCCCHHHHHHHHHHHHHHHHhhccccEEcCcCCccccc---cCCCceEEeccccccee
Confidence            999999999999887654 556667778888888887      57999999999   88888999999999974

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=99.96  E-value=6e-30  Score=184.12  Aligned_cols=140  Identities=17%  Similarity=0.228  Sum_probs=121.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|.+........+.+.+|+.+++.++||||+++++++.+++.+|+||||
T Consensus        25 l~~Y~i~~~lG~G~fg~Vy~~~~~~~g~~vAvK~i~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivmE~  104 (350)
T d1koaa2          25 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFEDDNEMVMIYEF  104 (350)
T ss_dssp             GGTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECCCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEcccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEEEEEEEc
Confidence            46899999999999999999995 57999999998766666677889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc--cCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK--GLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~--~~~~~l~df~~~~~  155 (167)
                      |+||+|.+.+.+..  .........+.|++.|+.|      +|+|+|++||+   +..  +..++|+|||+|+.
T Consensus       105 ~~gg~L~~~l~~~~~~l~e~~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIl---l~~~~~~~vkL~DFG~a~~  175 (350)
T d1koaa2         105 MSGGELFEKVADEHNKMSEDEAVEYMRQVCKGLCHMHENNYVHLDLKPENIM---FTTKRSNELKLIDFGLTAH  175 (350)
T ss_dssp             CCSCBHHHHHTCTTSCBCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSTTSCCEEECCCTTCEE
T ss_pred             CCCCCHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHhcCCeeeeechhHee---eccCCCCeEEEeecchhee
Confidence            99999999996543  3556667778899999988      47999999998   543  46789999999874

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-30  Score=178.97  Aligned_cols=143  Identities=23%  Similarity=0.318  Sum_probs=119.8

Q ss_pred             HHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049            8 ELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus         8 ~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ++....++|.+.+.||+|+||.||+|.+.++..||+|.+... ....+.+.+|+.+++.++||||+++++++. ++..++
T Consensus         7 ~wei~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~~~~~-~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~-~~~~~i   84 (272)
T d1qpca_           7 EWEVPRETLKLVERLGAGQFGEVWMGYYNGHTKVAVKSLKQG-SMSPDAFLAEANLMKQLQHQRLVRLYAVVT-QEPIYI   84 (272)
T ss_dssp             TTBCCGGGEEEEEEEEEETTEEEEEEEETTTEEEEEEEECTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEE
T ss_pred             CeecCHHHeEEeEEEecCCCcEEEEEEECCCCEEEEEEEccC-cCCHHHHHHHHHHHHhCCCCCEeEEEeeec-cCCeEE
Confidence            344456789999999999999999999878889999988643 345578999999999999999999999874 456799


Q ss_pred             EEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||||+++|+|.+.+....   .........+.+++.|+.|      +|+|+|++||+   ++++..+||+|||+|+.
T Consensus        85 v~Ey~~~g~L~~~~~~~~~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIl---l~~~~~~Kl~DFGla~~  158 (272)
T d1qpca_          85 ITEYMENGSLVDFLKTPSGIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANIL---VSDTLSCKIADFGLARL  158 (272)
T ss_dssp             EEECCTTCBHHHHTTSHHHHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             EEEeCCCCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhhee---eecccceeeccccceEE
Confidence            999999999998876543   2344555667888888887      47999999999   88899999999999974

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.2e-30  Score=182.52  Aligned_cols=140  Identities=18%  Similarity=0.096  Sum_probs=122.8

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ..++|.+++.||+|+||.||+|.. .+++.||+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+.+|+
T Consensus         3 ~l~dy~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~~~~~~i   82 (337)
T d1o6la_           3 TMNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQTHDRLCF   82 (337)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEECSSEEEE
T ss_pred             chHhcEEEEEEecCcCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhCCCCCEEEEEeeecccccccc
Confidence            346899999999999999999994 68999999987542   23456788999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      |||||+||+|.+.+..... +....+..+.+++.|+.|      +|||+||+||+   ++++..++|+|||+|+
T Consensus        83 v~ey~~gg~L~~~~~~~~~~~e~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIL---l~~~g~vkl~DFG~a~  153 (337)
T d1o6la_          83 VMEYANGGELFFHLSRERVFTEERARFYGAEIVSALEYLHSRDVVYRDIKLENLM---LDKDGHIKITDFGLCK  153 (337)
T ss_dssp             EEECCTTCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCB
T ss_pred             ceeccCCCchhhhhhcccCCcHHHHHHHHHHHhhhhhhhhhcCccccccCHHHeE---ecCCCCEEEeeccccc
Confidence            9999999999999997654 555667778889999988      57999999999   8888999999999997

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-29  Score=174.50  Aligned_cols=139  Identities=22%  Similarity=0.298  Sum_probs=121.7

Q ss_pred             hcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYI   92 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~   92 (167)
                      .++|.+.++||+|+||.||+|..++++.||+|.++.. ....+.+.+|+.+++.++||||+++++++.+++.+++|+||+
T Consensus         3 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~l~~~-~~~~~~~~~Ev~~~~~l~HpnIv~~~g~~~~~~~~~iv~Ey~   81 (258)
T d1k2pa_           3 PKDLTFLKELGTGQFGVVKYGKWRGQYDVAIKMIKEG-SMSEDEFIEEAKVMMNLSHEKLVQLYGVCTKQRPIFIITEYM   81 (258)
T ss_dssp             CCCCCCCCCCCEETTEEEEEEEETTTEEEEEEEEESS-SSCHHHHHHHHHHHHTCCCTTBCCEEEEECCSSSEEEEEECC
T ss_pred             hHHCEEeEEEecCCCeEEEEEEECCCCEEEEEEECcC-cCCHHHHHHHHHHHHhcCCCceeeEEEEEeeCCceEEEEEcc
Confidence            4789999999999999999999878889999988753 334578999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+++.....  .....+....+++.|+.|+      |+|+++.|++   ++.+..+||+|||+++.
T Consensus        82 ~~g~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nil---l~~~~~~kl~DfG~a~~  149 (258)
T d1k2pa_          82 ANGCLLNYLREMRHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCL---VNDQGVVKVSDFGLSRY  149 (258)
T ss_dssp             TTEEHHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEE---ECTTCCEEECCCSSCCB
T ss_pred             CCCcHHHhhhccccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEE---EcCCCcEEECcchhhee
Confidence            99999999776543  4456667788999999885      6899999999   88889999999999873

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.4e-29  Score=178.77  Aligned_cols=140  Identities=22%  Similarity=0.398  Sum_probs=112.4

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CC---cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DE---RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~---~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      .++|.+.+.||+|+||.||+|... ++   ..+|+|.+... .....+.+.+|+.+++.++||||+++++++..++.+++
T Consensus        25 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~~~~~i  104 (299)
T d1jpaa_          25 ISCVKIEQVIGAGEFGEVCSGHLKLPGKREIFVAIKTLKSGYTEKQRRDFLSEASIMGQFDHPNVIHLEGVVTKSTPVMI  104 (299)
T ss_dssp             GGGEEEEEEEEECSSSEEEEEEECC---CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSSSSCEE
T ss_pred             hhhcEEeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCCccEEEEEeeCCEEEE
Confidence            356778889999999999999853 33   35888877543 34455679999999999999999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||||++|+|.+++.....  ........+.+++.|+.|      +|+|+|+.||+   ++++..+||+|||+|+.
T Consensus       105 v~Ey~~~g~L~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHrDlKp~NIL---l~~~~~~Kl~DFGla~~  177 (299)
T d1jpaa_         105 ITEFMENGSLDSFLRQNDGQFTVIQLVGMLRGIAAGMKYLADMNYVHRDLAARNIL---VNSNLVCKVSDFGLSRF  177 (299)
T ss_dssp             EEECCTTEEHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCC-----
T ss_pred             EEEecCCCcceeeeccccCCCCHHHHHHHHHHHHHHHHHHhhCCCccCccccceEE---ECCCCcEEECCcccceE
Confidence            9999999999998887543  444555667889999988      47999999999   88899999999999874

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.8e-29  Score=176.24  Aligned_cols=140  Identities=23%  Similarity=0.199  Sum_probs=119.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC------cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG------KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~------~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.+|+|.+....      ....+.+.+|+.+++.++||||+++++++.+++.+
T Consensus         9 ~d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~   88 (293)
T d1jksa_           9 DDYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYENKTDV   88 (293)
T ss_dssp             GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEECSSEE
T ss_pred             ccCEEEeEEEecCCCeEEEEEEECCCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhCCCCCCCcEEEEEEECCEE
Confidence            46799999999999999999995 579999999875421      22467899999999999999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccC----Cccccccchhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGL----APKRKKFEEEK  154 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~----~~~l~df~~~~  154 (167)
                      |+|||||++|+|.+++..... .....+..+.+++.|+.|+      |+|+|++|++   +....    .++++|||.|+
T Consensus        89 ~iv~E~~~gg~L~~~i~~~~~l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nil---l~~~~~~~~~vkl~DfG~a~  165 (293)
T d1jksa_          89 ILILELVAGGELFDFLAEKESLTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIM---LLDRNVPKPRIKIIDFGLAH  165 (293)
T ss_dssp             EEEEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ESCSSSSSCCEEECCCTTCE
T ss_pred             EEEEEcCCCccccchhccccccchhHHHHHHHHHHHHHHhhhhcceeecccccceEE---EecCCCcccceEecchhhhh
Confidence            999999999999999987653 5566677788899999884      7999999998   55443    47999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       166 ~  166 (293)
T d1jksa_         166 K  166 (293)
T ss_dssp             E
T ss_pred             h
Confidence            4

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=1.5e-29  Score=179.84  Aligned_cols=139  Identities=19%  Similarity=0.210  Sum_probs=120.5

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|.+.+.||+|+||.||+|.. .+|+.||+|.+...   .....+.+.+|+.+++.++||||+++++++.+++.+|+||
T Consensus         4 ~dy~i~~~lG~G~fg~Vy~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~ivm   83 (316)
T d1fota_           4 QDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQDAQQIFMIM   83 (316)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEECSSEEEEEE
T ss_pred             hHeEEEEEEecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHhccCcChhheeeeEeeCCeeeeEe
Confidence            5799999999999999999995 57999999987532   3345678899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||+||+|.+.+..... ........+.+++.|+.|      +|+|+||+||+   ++.+..+||+|||.|+.
T Consensus        84 E~~~gg~l~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIL---l~~~g~vkL~DFG~a~~  153 (316)
T d1fota_          84 DYIEGGELFSLLRKSQRFPNPVAKFYAAEVCLALEYLHSKDIIYRDLKPENIL---LDKNGHIKITDFGFAKY  153 (316)
T ss_dssp             CCCCSCBHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ECTTSCEEECCCSSCEE
T ss_pred             eecCCccccccccccccccccHHHHHHHHHHHhhhhhccCcEEccccCchhee---EcCCCCEEEecCccceE
Confidence            99999999999887654 444555667788888877      57999999999   88889999999999984

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=1.2e-29  Score=179.74  Aligned_cols=139  Identities=22%  Similarity=0.249  Sum_probs=119.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCc---ccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGK---GKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~---~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      +.|+..+.||+|+||.||+|.. .+++.||+|.+.....   ...+.+.+|+.+++.++||||+++++++.+++.+|+||
T Consensus        15 ~~y~~l~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~iv~   94 (309)
T d1u5ra_          15 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLREHTAWLVM   94 (309)
T ss_dssp             HHEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEE
T ss_pred             HhcEeeEEEecCCCeEEEEEEECCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHHCCCCCEeeEEEEEEECCEEEEEE
Confidence            3589999999999999999984 5789999998765432   33456889999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||++|+|..++..... +....+..+.+++.|+.|      +|||+||+||+   +..+..+||+|||.|+.
T Consensus        95 E~~~~g~l~~~~~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NIL---l~~~~~~Kl~DFG~a~~  164 (309)
T d1u5ra_          95 EYCLGSASDLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNIL---LSEPGLVKLGDFGSASI  164 (309)
T ss_dssp             ECCSEEHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEE---EETTTEEEECCCTTCBS
T ss_pred             EecCCCchHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEE---ECCCCCEEEeecccccc
Confidence            99999988776665543 566677778899999988      47999999999   88888999999999884

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-29  Score=176.51  Aligned_cols=140  Identities=24%  Similarity=0.317  Sum_probs=117.0

Q ss_pred             HhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           10 DKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        10 ~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ....++|.+.+.||+|+||.||+|...  ..||+|.++..  .....+.+.+|+.+++.++||||+++++++. .+.+++
T Consensus         4 ei~~~~~~~~~~lG~G~fg~Vy~~~~~--~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~~~~~-~~~~~l   80 (276)
T d1uwha_           4 EIPDGQITVGQRIGSGSFGTVYKGKWH--GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYST-APQLAI   80 (276)
T ss_dssp             BCCTTCCCCCSEEEECSSCEEEEEESS--SEEEEEECCCSSCCTTHHHHHHHHHHHHTTCCCTTBCCEEEEEC-SSSCEE
T ss_pred             ccccccEEEEEEEeeCCCcEEEEEEEC--CEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeeeEEEe-ccEEEE
Confidence            345678999999999999999999853  35999987644  3455678999999999999999999999874 456899


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||||++|+|.+++.....  ........+.|++.|+.|      +|+|+|+.||+   ++.+..+||+|||+|+.
T Consensus        81 v~Ey~~~g~L~~~l~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~ivHrDlKp~NiL---l~~~~~~Kl~DFGla~~  153 (276)
T d1uwha_          81 VTQWCEGSSLYHHLHIIETKFEMIKLIDIARQTAQGMDYLHAKSIIHRDLKSNNIF---LHEDLTVKIGDFGLATV  153 (276)
T ss_dssp             EEECCCEEEHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EETTSSEEECCCCCSCC
T ss_pred             EEecCCCCCHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHhcCCEeccccCHHHEE---EcCCCCEEEccccceee
Confidence            9999999999999976543  445556667889999988      57999999999   88889999999999874

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.1e-29  Score=174.05  Aligned_cols=138  Identities=20%  Similarity=0.218  Sum_probs=113.3

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec----CCcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE----TEVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~----~~~~~l   87 (167)
                      .|...+.||+|+||.||+|.. .++..+|+|.+...  .....+.+.+|+++++.++||||+++++++.+    ++.+|+
T Consensus        10 y~~~~~~iG~G~fg~Vy~~~~~~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~~~~~~~~~~~~~~~i   89 (270)
T d1t4ha_          10 FLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWESTVKGKKCIVL   89 (270)
T ss_dssp             EEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEESSSCEEEEE
T ss_pred             EEEeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEeeccccCCEEEE
Confidence            346677899999999999995 57889999987543  33455678999999999999999999999865    356899


Q ss_pred             EEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh--------hhhcccchhHHHHhhh-ccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR--------LKRKKKKNKIWKQQLL-KGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~--------~h~~~~~~~~~~~~~~-~~~~~~l~df~~~~~  155 (167)
                      |||||++|+|.+++.+... ........+.|++.|+.|        +|+|+||+||+   +. ++..+||+|||+|+.
T Consensus        90 vmE~~~~g~L~~~l~~~~~~~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NIL---l~~~~~~~Kl~DFGla~~  164 (270)
T d1t4ha_          90 VTELMTSGTLKTYLKRFKVMKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIF---ITGPTGSVKIGDLGLATL  164 (270)
T ss_dssp             EEECCCSCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEE---ESSTTSCEEECCTTGGGG
T ss_pred             EEeCCCCCcHHHHHhccccccHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhce---eeCCCCCEEEeecCccee
Confidence            9999999999999987643 455556667888888766        57999999998   64 467899999999984

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.96  E-value=4.4e-29  Score=174.46  Aligned_cols=140  Identities=22%  Similarity=0.258  Sum_probs=121.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc---------cHHHHHHHHHHHhcCC-CCceeeeeeeeecC
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG---------KLDEFINKVVILSQIN-YRNVVKLLGCCLET   82 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~---------~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~   82 (167)
                      ++|++.+.||+|+||+||+|.. .+++.+|+|.+......         ..+.+.+|+.+++.++ ||||+++++++.++
T Consensus         3 ~~y~~~~~iG~G~~g~V~~~~~~~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~   82 (277)
T d1phka_           3 ENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYETN   82 (277)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEECS
T ss_pred             ccCEEceEEecCcCeEEEEEEECCCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHhcCCCCeEEEEeecccC
Confidence            6899999999999999999995 57899999987654321         2245889999999997 99999999999999


Q ss_pred             CcceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           83 EVPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        83 ~~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +.+|+|||||++|+|.++++.... +.........|++.|+.|+      |+|+||+|++   +..+..++|+|||++++
T Consensus        83 ~~~~ivmE~~~~g~L~~~l~~~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nil---l~~~~~~kl~DFG~a~~  159 (277)
T d1phka_          83 TFFFLVFDLMKKGELFDYLTEKVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENIL---LDDDMNIKLTDFGFSCQ  159 (277)
T ss_dssp             SEEEEEEECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             cceEEEEEcCCCchHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEE---EcCCCCeEEccchheeE
Confidence            999999999999999999987654 5666777788999999884      6999999999   88889999999999985


Q ss_pred             h
Q 040049          156 R  156 (167)
Q Consensus       156 ~  156 (167)
                      .
T Consensus       160 ~  160 (277)
T d1phka_         160 L  160 (277)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.4e-29  Score=176.98  Aligned_cols=139  Identities=16%  Similarity=0.179  Sum_probs=118.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      -++|.+.+.||+|+||.||+|.. .+++.+|+|.++.. ..+...+.+|+.+++.++||||+++++++.+++.+|+||||
T Consensus         4 ~~rY~i~~~lG~G~fg~Vy~~~~~~~~~~~AiK~i~~~-~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~~~~~~lvmE~   82 (321)
T d1tkia_           4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVK-GTDQVLVKKEISILNIARHRNILHLHESFESMEELVMIFEF   82 (321)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCC-THHHHHHHHHHHHHHHSCCTTBCCEEEEEEETTEEEEEECC
T ss_pred             ccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEcCC-cccHHHHHHHHHHHHhCCCCCCCeEEEEEEECCEEEEEEec
Confidence            46799999999999999999995 57899999998654 33445688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc--cCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK--GLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~--~~~~~l~df~~~~~  155 (167)
                      |+||+|.+.+.....  .....+..+.+++.|+.|+      |+|+||+||+   +..  ...++++|||+++.
T Consensus        83 ~~gg~L~~~i~~~~~~l~e~~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIl---l~~~~~~~ikl~DFG~~~~  153 (321)
T d1tkia_          83 ISGLDIFERINTSAFELNEREIVSYVHQVCEALQFLHSHNIGHFDIRPENII---YQTRRSSTIKIIEFGQARQ  153 (321)
T ss_dssp             CCCCBHHHHHTSSSCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ESSSSCCCEEECCCTTCEE
T ss_pred             CCCCcHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCccccccccee---ecCCCceEEEEcccchhhc
Confidence            999999999987642  5556677788899999884      7999999998   654  34778999999873

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-28  Score=172.63  Aligned_cols=142  Identities=21%  Similarity=0.320  Sum_probs=119.6

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEE
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      +....++|.+.+.||+|+||.||+|.+.+++.||+|.+... ....+.+.+|+.+++.++||||+++++++. .+..++|
T Consensus        12 ~~i~~~~~~i~~~iG~G~fg~Vy~~~~~~~~~vAiK~l~~~-~~~~~~~~~E~~~l~~l~h~nIv~~~g~~~-~~~~~lv   89 (285)
T d1fmka3          12 WEIPRESLRLEVKLGQGCFGEVWMGTWNGTTRVAIKTLKPG-TMSPEAFLQEAQVMKKLRHEKLVQLYAVVS-EEPIYIV   89 (285)
T ss_dssp             SBCCGGGEEEEEEEEECSSCEEEEEEETTTEEEEEEECCTT-SSCHHHHHHHHHHHHHCCCTTBCCEEEEEC-SSSCEEE
T ss_pred             eEcCHHHEEEeeEEeeCCCeEEEEEEECCCCEEEEEEECcc-cCCHHHHHHHHHHHHhcccCCEeEEEEEEe-cCCeEEE
Confidence            34456789999999999999999999877788999998643 445578999999999999999999999984 4568999


Q ss_pred             EecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||+++|+|...+....   .........+.+++.|+++      +|+|+|+.||+   ++.+..++|+|||+|+.
T Consensus        90 ~Ey~~~g~l~~~~~~~~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIl---l~~~~~~kl~DfGla~~  162 (285)
T d1fmka3          90 TEYMSKGSLLDFLKGETGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANIL---VGENLVCKVADFGLARL  162 (285)
T ss_dssp             ECCCTTCBHHHHHSHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECGGGCEEECCCCTTC-
T ss_pred             EEecCCCchhhhhhhcccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEE---ECCCCcEEEcccchhhh
Confidence            99999999998887543   2445566677888888887      47999999999   88889999999999974

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-28  Score=171.90  Aligned_cols=140  Identities=24%  Similarity=0.357  Sum_probs=115.9

Q ss_pred             hhcCCcccce-ecccCceeEEEEEeC---CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIV-LGQGGQGTVHKGMLA---DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~-ig~g~~g~v~~~~~~---~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+. ||+|+||.||+|...   ++..||+|.++.. .....+.+.+|+++++.++||||+++++++.+ +.++
T Consensus         6 ~~~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~g~~~~-~~~~   84 (285)
T d1u59a_           6 KRDNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA-EALM   84 (285)
T ss_dssp             CGGGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES-SSEE
T ss_pred             cccCeEECCcEEecccCeEEEEEEEecCCCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhCCCCCEeeEeeeecc-CeEE
Confidence            4466777774 999999999999742   4567999988654 34456789999999999999999999999864 5689


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|||||++|+|.+++.....  +.......+.+++.|+.|      +|+|+|+.|++   +..+..+|++|||+|+.
T Consensus        85 lvmE~~~~g~L~~~l~~~~~~l~~~~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nil---l~~~~~~Kl~DFGla~~  158 (285)
T d1u59a_          85 LVMEMAGGGPLHKFLVGKREEIPVSNVAELLHQVSMGMKYLEEKNFVHRDLAARNVL---LVNRHYAKISDFGLSKA  158 (285)
T ss_dssp             EEEECCTTEEHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EEETTEEEECCCTTCEE
T ss_pred             EEEEeCCCCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhCCeecCcCchhhee---eccCCceeeccchhhhc
Confidence            99999999999999875432  455666778899999988      46899999999   88899999999999874

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.4e-28  Score=174.31  Aligned_cols=142  Identities=24%  Similarity=0.361  Sum_probs=114.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCC-----cEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCC
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADE-----RIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETE   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~-----~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~   83 (167)
                      ..++|.+.+.||+|+||.||+|.. ..+     ..||+|.+... .......+.+|+.++..+ +||||+++++++.+.+
T Consensus        35 ~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~l~~~~~~~~  114 (325)
T d1rjba_          35 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTLSG  114 (325)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECSSS
T ss_pred             CHHHeEEeeEEeeCCCeEEEEEEEcCCCcccceeEEEEEEeccccCHHHHHHHHHHHHHHHHhcCCCcEeEEEEEEeeCC
Confidence            457899999999999999999984 322     36888877543 344456788999999988 8999999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc------------------------chHhhHHHHHHHHcCchh------hhhcccchh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE------------------------DFVKDVGFILSRRGGIPR------LKRKKKKNK  133 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~------------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~  133 (167)
                      .+++|||||++|+|.++++....                        .....+..+.+++.|+.|      +|||+||+|
T Consensus       115 ~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~N  194 (325)
T d1rjba_         115 PIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARN  194 (325)
T ss_dssp             SCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGG
T ss_pred             eEEEEEEcCCCCcHHHHHHhccCCCcchhhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhc
Confidence            99999999999999999986531                        223444567788888887      579999999


Q ss_pred             HHHHhhhccCCccccccchhhhh
Q 040049          134 IWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus       134 ~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      |+   +..+..+||+|||+|+..
T Consensus       195 il---l~~~~~~Kl~DFGla~~~  214 (325)
T d1rjba_         195 VL---VTHGKVVKICDFGLARDI  214 (325)
T ss_dssp             EE---EETTTEEEECCCGGGSCG
T ss_pred             cc---cccCCeEEEeeccccccc
Confidence            99   888899999999999853

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.6e-28  Score=176.67  Aligned_cols=139  Identities=18%  Similarity=0.129  Sum_probs=121.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVY   89 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~   89 (167)
                      ++|++++.||+|+||.||+|.. .+|+.+|+|.+...   .....+.+.+|+.+++.++||||+++++++.+.+..++|+
T Consensus        41 d~y~i~~~lG~G~fg~Vy~a~~~~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~~v~  120 (350)
T d1rdqe_          41 DQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKDNSNLYMVM  120 (350)
T ss_dssp             GGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEE
T ss_pred             cCeEEEEEeecCcCcEEEEEEECCCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHHcCCCcEeeccccccccccccccc
Confidence            6799999999999999999995 57999999987532   3345677899999999999999999999999999999999


Q ss_pred             ecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           90 EYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        90 e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+.+|+|.+.+..... .....+..+.+++.|+.|+      |||+||+||+   +..+..++|+|||+|+.
T Consensus       121 e~~~~g~l~~~l~~~~~l~e~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NIL---l~~~g~ikL~DFG~a~~  190 (350)
T d1rdqe_         121 EYVAGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLL---IDQQGYIQVTDFGFAKR  190 (350)
T ss_dssp             ECCTTCBHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTSCEEECCCTTCEE
T ss_pred             ccccccchhhhHhhcCCCCHHHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcc---cCCCCCEEeeeceeeee
Confidence            99999999999987643 5566777788899998885      7999999999   88888999999999984

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2e-28  Score=177.04  Aligned_cols=140  Identities=14%  Similarity=0.084  Sum_probs=116.1

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHH---HHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFIN---KVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~---e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|.+.+.||+|+||.||+|.. .+|+.||+|.+....   ......+.+   ++.+++.++||||+++++++.+++.+
T Consensus         3 lddy~i~~~lG~G~fg~Vy~~~~~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~~~~~   82 (364)
T d1omwa3           3 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHTPDKL   82 (364)
T ss_dssp             STTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEECSSEE
T ss_pred             HHhCeeeeEEecCCCeEEEEEEECCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEECCEE
Confidence            46899999999999999999995 579999999875321   122223334   46777788999999999999999999


Q ss_pred             eEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|||||+||+|.+++..... .....+..+.+++.|+.|      +|||+||+||+   +.....+||+|||+|+.
T Consensus        83 ~ivmE~~~gg~L~~~l~~~~~~~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NIL---l~~~g~iKl~DFGla~~  156 (364)
T d1omwa3          83 SFILDLMNGGDLHYHLSQHGVFSEADMRFYAAEIILGLEHMHNRFVVYRDLKPANIL---LDEHGHVRISDLGLACD  156 (364)
T ss_dssp             EEEECCCCSCBHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECSSSCEEECCCTTCEE
T ss_pred             EEEEEecCCCcHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHCCccceeeccceeE---EcCCCcEEEeeeceeee
Confidence            999999999999999987654 455667778889999988      57999999999   88889999999999873

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.9e-28  Score=170.22  Aligned_cols=140  Identities=24%  Similarity=0.379  Sum_probs=114.8

Q ss_pred             hcCCcccceecccCceeEEEEEeC-CC----cEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGMLA-DE----RIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~~-~~----~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      .++|...+.||+|+||.||+|.+. ++    ..||+|.+... .......+.+|+.+++.++||||+++++++.+.+..+
T Consensus         6 ~~~~~~~~~iG~G~fG~Vy~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~H~nIv~~~g~~~~~~~~~   85 (283)
T d1mqba_           6 PSCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMM   85 (283)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECSSSSEE
T ss_pred             HHHeEeeeEEeeCCCeEEEEEEEeCCCCEEEEEEEEEEECcccChHHHHHHHHHHHHHHhcCCCCEeeeeEEEecCCceE
Confidence            467889999999999999999853 22    46899988644 3344557899999999999999999999999999999


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++||+.++++.+.+.....  ........+.+++.|+.|      +|+|+|++||+   ++.+..+||+|||+|+.
T Consensus        86 ~v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~gl~~lH~~~iiHrDlKp~NIL---l~~~~~~Kl~DFGla~~  159 (283)
T d1mqba_          86 IITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNIL---VNSNLVCKVSDFGLSRV  159 (283)
T ss_dssp             EEEECCTTEEHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCCCC---
T ss_pred             EEEEecccCcchhhhhcccccccHHHHHHHHHHHHHhhhhccccccccCccccceEE---ECCCCeEEEcccchhhc
Confidence            99999999999988876543  444555677888888888      47999999999   88899999999999985

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-28  Score=172.55  Aligned_cols=139  Identities=19%  Similarity=0.192  Sum_probs=118.9

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC---CcccHHHHHHHHHHHh-cCCCCceeeeeeeeecCCcceEE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV---GKGKLDEFINKVVILS-QINYRNVVKLLGCCLETEVPLLV   88 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~---~~~~~~~~~~e~~~~~-~l~h~~i~~l~~~~~~~~~~~lv   88 (167)
                      ++|.+.+.||+|+||.||+|.. .+++.||+|.+...   .....+.+..|...+. .++||||+++++++.+++.+|+|
T Consensus         2 ddy~i~~~iG~G~fg~Vy~~~~~~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~~~hp~Iv~~~~~~~~~~~~yiv   81 (320)
T d1xjda_           2 EDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQTKENLFFV   81 (320)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEECSSEEEEE
T ss_pred             CCeEEeeEEecCCCcEEEEEEECCCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHhCCCCcEEEEEEEEccCCceeEE
Confidence            6799999999999999999995 57999999988532   2345566777777665 68999999999999999999999


Q ss_pred             EecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           89 YEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        89 ~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |||+++|+|.+++..... +.......+.+++.|+.|+      |+|+|++||+   +.+...++++|||.++.
T Consensus        82 mEy~~~g~L~~~i~~~~~~~e~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL---~~~~~~~kl~DFG~a~~  152 (320)
T d1xjda_          82 MEYLNGGDLMYHIQSCHKFDLSRATFYAAEIILGLQFLHSKGIVYRDLKLDNIL---LDKDGHIKIADFGMCKE  152 (320)
T ss_dssp             EECCTTCBHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEE---ECTTSCEEECCCTTCBC
T ss_pred             EeecCCCcHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCccccee---ecCCCceeccccchhhh
Confidence            999999999999987654 5556677788999999884      7999999999   88889999999999873

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.7e-28  Score=168.85  Aligned_cols=132  Identities=26%  Similarity=0.337  Sum_probs=109.8

Q ss_pred             ceecccCceeEEEEEeC---CCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEecCCC
Q 040049           20 IVLGQGGQGTVHKGMLA---DERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        20 ~~ig~g~~g~v~~~~~~---~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~~~~   94 (167)
                      +.||+|+||.||+|.+.   +++.||+|.++..  ++...+.+.+|+.+++.++||||+++++++.+ +..++||||+++
T Consensus        13 k~iG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~HpnIv~~~g~~~~-~~~~lvmE~~~~   91 (277)
T d1xbba_          13 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA-ESWMLVMEMAEL   91 (277)
T ss_dssp             EEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES-SSEEEEEECCTT
T ss_pred             CCcccCCCeEEEEEEEccCCcCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhCCCCCCceEEEEecc-CCEEEEEEcCCC
Confidence            46999999999999743   3578999987543  33445679999999999999999999999865 457899999999


Q ss_pred             CCHHHHHhhcCc-chHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           95 GNLSDYLHEQNE-DFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        95 g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|.+++..... ........+.+++.|+.|+      |+|+|+.||+   +..+..++++|||+|+.
T Consensus        92 g~L~~~l~~~~~l~~~~~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nil---l~~~~~~kl~DFGla~~  156 (277)
T d1xbba_          92 GPLNKYLQQNRHVKDKNIIELVHQVSMGMKYLEESNFVHRDLAARNVL---LVTQHYAKISDFGLSKA  156 (277)
T ss_dssp             EEHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EEETTEEEECCCTTCEE
T ss_pred             CcHHHHHhhccCCCHHHHHHHHHHHHHHHhhHHhCCcccCCCcchhhc---ccccCcccccchhhhhh
Confidence            999999987653 5556667788999999885      7999999999   88889999999999873

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=1.4e-27  Score=168.77  Aligned_cols=146  Identities=19%  Similarity=0.326  Sum_probs=120.9

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCCCc-ccHHHHHHHHHHHhcCCCCceeeeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVVGK-GKLDEFINKVVILSQINYRNVVKLLGCC   79 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~~~-~~~~~~~~e~~~~~~l~h~~i~~l~~~~   79 (167)
                      .++...+++|++.+.||+|+||.||+|+..      ++..||+|.+..... ...+.+.+|+.+++.++|||++++++++
T Consensus         6 ~~~e~p~~~~~~~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~   85 (301)
T d1lufa_           6 LSLEYPRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVC   85 (301)
T ss_dssp             HHTBCCGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEE
T ss_pred             hhccCCHHHcEEeEEEeeCCCeEEEEEEECCCccCCCCeEEEEEEEChhcChHHHHHHHHHHHHHHhcCCCCcccceeee
Confidence            345556788999999999999999999843      357899999865433 3356799999999999999999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-------------------------chHhhHHHHHHHHcCchh------hhhc
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-------------------------DFVKDVGFILSRRGGIPR------LKRK  128 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-------------------------~~~~~~~~~~~i~~~l~~------~h~~  128 (167)
                      .+.+..++++||+++|+|.+++.....                         ........+.+++.|++|      +|+|
T Consensus        86 ~~~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrD  165 (301)
T d1lufa_          86 AVGKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRD  165 (301)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSC
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCccccccccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeE
Confidence            999999999999999999999975431                         122344556778888877      4799


Q ss_pred             ccchhHHHHhhhccCCccccccchhhh
Q 040049          129 KKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +|++||+   ++.+..+||+|||+|+.
T Consensus       166 lKp~NIL---ld~~~~~Kl~DFGls~~  189 (301)
T d1lufa_         166 LATRNCL---VGENMVVKIADFGLSRN  189 (301)
T ss_dssp             CSGGGEE---ECGGGCEEECCCSCHHH
T ss_pred             EcccceE---ECCCCcEEEccchhhee
Confidence            9999999   88889999999999873

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.7e-28  Score=169.85  Aligned_cols=138  Identities=21%  Similarity=0.291  Sum_probs=114.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+++.||+|+||.||+|.. .+++.||+|.++...  ....+.+.+|+.+++.++||||+++++++.+++.+|+|+|
T Consensus         2 d~Y~~~~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~Hp~Iv~~~~~~~~~~~~~iv~e   81 (298)
T d1gz8a_           2 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTENKLYLVFE   81 (298)
T ss_dssp             TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEC-------CCHHHHHHHHHHTTCCCTTBCCEEEEEEETTEEEEEEE
T ss_pred             CCCEeccEEecCcCeEEEEEEECCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEEeccccccccceeEEEe
Confidence            5899999999999999999995 679999999885432  2345678999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhc-C--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQ-N--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~-~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+.+ ++.+.+... .  ......+..+.|++.|+.|      +|+|+||+||+   ++.+...+++|||.|+.
T Consensus        82 ~~~~-~~~~~~~~~~~~~l~e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl---~~~~~~~kl~DFG~a~~  151 (298)
T d1gz8a_          82 FLHQ-DLKKFMDASALTGIPLPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLL---INTEGAIKLADFGLARA  151 (298)
T ss_dssp             CCSE-EHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECSTTHHHH
T ss_pred             ecCC-chhhhhhhhcccCCCHHHHHHHHHHHHHHHHHhhcCCEEccccCchhee---ecccCcceeccCCccee
Confidence            9976 444554432 2  2556667778899999988      57999999999   78888999999999984

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=99.94  E-value=2.3e-27  Score=166.49  Aligned_cols=140  Identities=21%  Similarity=0.207  Sum_probs=119.2

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      ++|.+.+.||+|+||.||+|...+++.||+|.+....  ......+.+|+.+++.++||||+++++++..++..++++|+
T Consensus         2 ~~Y~~~~~iG~G~fg~Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~~~~~i~~e~   81 (286)
T d1ob3a_           2 EKYHGLEKIGEGTYGVVYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHTKKRLVLVFEH   81 (286)
T ss_dssp             CSEEEEEEEEEETTEEEEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEECSSCEEEEEEC
T ss_pred             CCceeccEEecCCCcEEEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhCCCCcEEeeeeecccCCceeEEEEe
Confidence            5899999999999999999998889999999886542  33357889999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           92 IPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        92 ~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      +.++.+..+.+.... .....+..+.+++.|+.+      +|+|+||+||+   +..+..++++|||.+...
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIl---l~~~~~~kl~DfG~a~~~  150 (286)
T d1ob3a_          82 LDQDLKKLLDVCEGGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLL---INREGELKIADFGLARAF  150 (286)
T ss_dssp             CSEEHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTSCEEECCTTHHHHH
T ss_pred             ehhhhHHHHHhhcCCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceee---EcCCCCEEecccccceec
Confidence            988666666554433 556666778889888887      57999999999   888899999999998753

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.6e-27  Score=167.86  Aligned_cols=140  Identities=24%  Similarity=0.372  Sum_probs=114.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCc--EEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeeeeeeecCCcceE
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADER--IVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~--~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~~~~~~~l   87 (167)
                      -++|.+.+.||+|+||.||+|.+ .++.  .||+|.+... .....+.+.+|+.+++.+ +||||+++++++.+.+.+++
T Consensus         9 ~~~~~~~~~iG~G~fg~Vy~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~~~~~~i   88 (309)
T d1fvra_           9 WNDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHRGYLYL   88 (309)
T ss_dssp             GGGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEETTEEEE
T ss_pred             HHHcEEEEEEeeCCCcEEEEEEECCCCeEEEEEEEEECcccChHHHHHHHHHHHHHHhccCCCCEeeEEEEEecCCeeEE
Confidence            36889999999999999999984 4554  4677776433 334556799999999998 79999999999999999999


Q ss_pred             EEecCCCCCHHHHHhhcC-----------------cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCC
Q 040049           88 VYEYIPNGNLSDYLHEQN-----------------EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLA  144 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~-----------------~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~  144 (167)
                      |+||+++|+|.++++...                 .+....+....+++.|+.+      +|+|+|+.||+   +.....
T Consensus        89 V~ey~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL---~~~~~~  165 (309)
T d1fvra_          89 AIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNIL---VGENYV  165 (309)
T ss_dssp             EECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---ECGGGC
T ss_pred             EEEecCCCcHHHHHhhccccccchhhhccccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEE---EcCCCc
Confidence            999999999999997542                 1344566678888999887      57999999999   888899


Q ss_pred             ccccccchhhh
Q 040049          145 PKRKKFEEEKW  155 (167)
Q Consensus       145 ~~l~df~~~~~  155 (167)
                      +||+|||.++.
T Consensus       166 ~kl~DfG~a~~  176 (309)
T d1fvra_         166 AKIADFGLSRG  176 (309)
T ss_dssp             EEECCTTCEES
T ss_pred             eEEcccccccc
Confidence            99999999873

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.2e-27  Score=164.55  Aligned_cols=138  Identities=24%  Similarity=0.302  Sum_probs=112.7

Q ss_pred             hhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCcceEEEe
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEVPLLVYE   90 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~~~lv~e   90 (167)
                      .-++|.+.+.||+|+||.||+|.. .|..||+|.++.  ....+.+.+|+.+++.++||||+++++++.. ++.+++|+|
T Consensus         5 ~~~~~~~~~~lG~G~fg~Vy~~~~-~~~~vAvK~i~~--~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~e   81 (262)
T d1byga_           5 NMKELKLLQTIGKGEFGDVMLGDY-RGNKVAVKCIKN--DATAQAFLAEASVMTQLRHSNLVQLLGVIVEEKGGLYIVTE   81 (262)
T ss_dssp             CGGGEEEEEEEEECSSCEEEEEEE-TTEEEEEEECCC--CC--HHHHHTHHHHTTCCCTTBCCEEEEECCC--CCEEEEC
T ss_pred             CHHHeEEeEEEecCCCeEEEEEEE-CCeEEEEEEECc--HHHHHHHHHHHHHHHhCCCCCEeeEEEEEEecCCcEEEEEe
Confidence            346788999999999999999997 578899999864  3455789999999999999999999998854 567899999


Q ss_pred             cCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+++|+|.+++.+..   .+.......+.+++.|+.|      +|+|+++.|++   ++.+..++++|||.++.
T Consensus        82 y~~~g~L~~~l~~~~~~~l~~~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil---~~~~~~~kl~dfg~s~~  152 (262)
T d1byga_          82 YMAKGSLVDYLRSRGRSVLGGDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVL---VSEDNVAKVSDFGLTKE  152 (262)
T ss_dssp             CCTTEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTTSCEEECCCCC---
T ss_pred             ccCCCCHHHHHHhcCCCCCCHHHHHHHHHHHHhhccccccCceeccccchHhhe---ecCCCCEeeccccccee
Confidence            999999999997653   2444555667888888888      46899999999   88899999999999884

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.94  E-value=3.2e-27  Score=165.11  Aligned_cols=139  Identities=21%  Similarity=0.223  Sum_probs=117.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---cccHHHHHHHHHHHhcCCCCceeeeeeeeecCC----c
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---KGKLDEFINKVVILSQINYRNVVKLLGCCLETE----V   84 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~----~   84 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.||+|.++...   ......+.+|+.+++.++||||+++++++...+    .
T Consensus         6 ~drY~i~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~~~hpniv~~~~~~~~~~~~~~~   85 (277)
T d1o6ya_           6 SDRYELGEILGFGGMSEVHLARDLRLHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAETPAGPL   85 (277)
T ss_dssp             TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEECSSSEE
T ss_pred             cceeEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHhcCCCCCCcccceeeeccCCCce
Confidence            46799999999999999999994 689999999986543   234457899999999999999999999987653    3


Q ss_pred             ceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhh
Q 040049           85 PLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEK  154 (167)
Q Consensus        85 ~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~  154 (167)
                      +|+||||++|++|.+.+..... ........+.|++.|+.+      +|+|+||+||+   +..+...+++|||.++
T Consensus        86 ~~lvmE~~~g~~L~~~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIl---l~~~~~~~l~d~~~~~  159 (277)
T d1o6ya_          86 PYIVMEYVDGVTLRDIVHTEGPMTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIM---ISATNAVKVMDFGIAR  159 (277)
T ss_dssp             EEEEEECCCEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EETTSCEEECCCTTCE
T ss_pred             EEEEEECCCCCEehhhhcccCCCCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccc---cCccccceeehhhhhh
Confidence            7899999999999998887653 555666778889999887      57999999999   8888899999999865

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=165.68  Aligned_cols=140  Identities=17%  Similarity=0.325  Sum_probs=111.0

Q ss_pred             hhcCCcccceecccCceeEEEEEeC-C---CcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcce
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGMLA-D---ERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPL   86 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~~-~---~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~   86 (167)
                      ..++|.+.+.||+|+||.||+|... +   +..+|+|.++... ....+.+.+|+.+++.++||||+++++++. .+.++
T Consensus         5 ~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~-~~~~~   83 (273)
T d1mp8a_           5 QRERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVIT-ENPVW   83 (273)
T ss_dssp             CGGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEC-SSSCE
T ss_pred             CHHHeEEEEEEeeCCCcEEEEEEEecCCceeEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEe-cCeEE
Confidence            4578999999999999999999853 2   3568888876443 334567999999999999999999999985 56789


Q ss_pred             EEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           87 LVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        87 lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +||||+++|+|.+++.....  +.......+.+++.|+.|      +|+|+|+.||+   +.....+|++|||.|+.
T Consensus        84 iv~E~~~~g~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIl---l~~~~~~Kl~DfG~a~~  157 (273)
T d1mp8a_          84 IIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARNVL---VSSNDCVKLGDFGLSRY  157 (273)
T ss_dssp             EEEECCTTEEHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---EEETTEEEECC------
T ss_pred             EEEEeccCCcHHhhhhccCCCCCHHHHHHHHHHHHHHhhhhcccCeeccccchhhee---ecCCCcEEEccchhhee
Confidence            99999999999998776543  445566667889999888      57999999999   88889999999999984

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-27  Score=165.93  Aligned_cols=136  Identities=18%  Similarity=0.215  Sum_probs=110.5

Q ss_pred             cCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHH--HHHHhcCCCCceeeeeeeeecCC----cceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINK--VVILSQINYRNVVKLLGCCLETE----VPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e--~~~~~~l~h~~i~~l~~~~~~~~----~~~l   87 (167)
                      .+|.+.+.||+|+||.||+|+. +|+.||+|.++..   ....+.+|  +..+..++||||+++++++.+++    ..++
T Consensus         3 ~~~~l~~~iG~G~fg~Vy~~~~-~g~~vAvK~~~~~---~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~l   78 (303)
T d1vjya_           3 RTIVLQESIGKGRFGEVWRGKW-RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWL   78 (303)
T ss_dssp             GGEEEEEEEECCSSSEEEEEEE-TTEEEEEEEECGG---GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEE
T ss_pred             cEEEEEEEEeeCCCeEEEEEEE-CCEEEEEEEECcc---chhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEE
Confidence            5678889999999999999986 6889999988633   22344444  44555789999999999997653    4789


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh--------------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR--------------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~--------------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                      ||||+++|+|.+++++........+....+++.++.+              +|+|+|++||+   ++.+..+||+|||++
T Consensus        79 v~Ey~~~g~L~~~l~~~~l~~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NIL---l~~~~~~Kl~DFGl~  155 (303)
T d1vjya_          79 VSDYHEHGSLFDYLNRYTVTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNIL---VKKNGTCCIADLGLA  155 (303)
T ss_dssp             EEECCTTCBHHHHHHHCCBCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEE---ECTTSCEEECCCTTC
T ss_pred             EEecccCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceE---EcCCCCeEEEecCcc
Confidence            9999999999999998765666666777888877765              48999999999   888999999999988


Q ss_pred             hhh
Q 040049          154 KWR  156 (167)
Q Consensus       154 ~~~  156 (167)
                      +..
T Consensus       156 ~~~  158 (303)
T d1vjya_         156 VRH  158 (303)
T ss_dssp             EEE
T ss_pred             ccc
Confidence            743

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.4e-27  Score=167.98  Aligned_cols=146  Identities=23%  Similarity=0.354  Sum_probs=120.1

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeee
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCC   79 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~   79 (167)
                      +++....++|.+.+.||+|+||.||+|.+.      ++..||+|.++.. .......+.+|+.+++.++||||+++++++
T Consensus        13 ~~~ei~~~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~   92 (308)
T d1p4oa_          13 DEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLGVV   92 (308)
T ss_dssp             CTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEEEE
T ss_pred             cceeecHHHeEEeeEEeeCCCeEEEEEEECCcccCCCCcEEEEEEECcccChHHHHHHHHHHHHHHHcCCCCEeeeeeEE
Confidence            455556789999999999999999999742      2578999988643 233445689999999999999999999999


Q ss_pred             ecCCcceEEEecCCCCCHHHHHhhcCc-----------chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc
Q 040049           80 LETEVPLLVYEYIPNGNLSDYLHEQNE-----------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG  142 (167)
Q Consensus        80 ~~~~~~~lv~e~~~~g~L~~~i~~~~~-----------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~  142 (167)
                      ...+..++|+||+++|+|.+++.....           ..........+++.|+.+      +|+|+|+.|++   ++.+
T Consensus        93 ~~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiL---ld~~  169 (308)
T d1p4oa_          93 SQGQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCM---VAED  169 (308)
T ss_dssp             CSSSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEE---ECTT
T ss_pred             ecCCceeEEEeecCCCCHHHHHHhcccccccccccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCcee---ecCC
Confidence            999999999999999999999885431           122344567778888877      57999999999   8899


Q ss_pred             CCccccccchhhh
Q 040049          143 LAPKRKKFEEEKW  155 (167)
Q Consensus       143 ~~~~l~df~~~~~  155 (167)
                      ..+||+|||+|+.
T Consensus       170 ~~~Kl~DFGla~~  182 (308)
T d1p4oa_         170 FTVKIGDFGMTRD  182 (308)
T ss_dssp             CCEEECCTTCCCG
T ss_pred             ceEEEeeccccee
Confidence            9999999999974

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=165.27  Aligned_cols=138  Identities=22%  Similarity=0.368  Sum_probs=112.4

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCc----EEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceE
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADER----IVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLL   87 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~----~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~l   87 (167)
                      ++|++.+.||+|+||.||+|.+ .+|+    +||+|.+... .....+.+.+|+.+++.++||||+++++++.++ ..++
T Consensus         9 ~dy~~~~~lG~G~fG~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~g~~~~~-~~~~   87 (317)
T d1xkka_           9 TEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTS-TVQL   87 (317)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEECC----CCEEEEEEEECC----CTHHHHHHHHHHHHHCCCTTBCCEEEEEESS-SEEE
T ss_pred             HHCEEeeEEecCCCeEEEEEEEcCCCCEEEEEEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC-CeeE
Confidence            5799999999999999999984 4444    5888877543 345567899999999999999999999999764 5677


Q ss_pred             EEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++.+|+|.+.+.....  +.......+.+++.|+.|      +|+|+|+.||+   ++.+..+||+|||+|+.
T Consensus        88 v~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~qi~~gl~yLH~~~iiHrDlKp~NIl---l~~~~~~kl~DFGla~~  160 (317)
T d1xkka_          88 ITQLMPFGCLLDYVREHKDNIGSQYLLNWCVQIAKGMNYLEDRRLVHRDLAARNVL---VKTPQHVKITDFGLAKL  160 (317)
T ss_dssp             EEECCTTCBHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---EEETTEEEECCCSHHHH
T ss_pred             EEEeccCCcccccccccccCCCHHHHHHHHHHHHHHHHHHHHcCcccCcchhhcce---eCCCCCeEeecccccee
Confidence            8899999999998887643  344556678899999988      57999999999   88899999999999984

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.7e-27  Score=166.41  Aligned_cols=135  Identities=21%  Similarity=0.179  Sum_probs=109.0

Q ss_pred             ccceecccCceeEEEEEe-CCCcEEEEEeccCCCcc-----cHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEec
Q 040049           18 VNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKG-----KLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYEY   91 (167)
Q Consensus        18 ~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~-----~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e~   91 (167)
                      .++.||+|+||+||+|.. .+|+.||+|.++.....     ..+.+.+|+.+++.++||||+++++++..++.+|+||||
T Consensus         2 ~l~~lG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~~~~~~~~~ivmE~   81 (299)
T d1ua2a_           2 KLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGHKSNISLVFDF   81 (299)
T ss_dssp             EEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECCTTCCEEEEEC
T ss_pred             cceEeccCcCeEEEEEEECCCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHhCCCCCEeEEEeeeccCCceeehhhh
Confidence            357899999999999994 57999999987643221     124688999999999999999999999999999999999


Q ss_pred             CCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           92 IPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        92 ~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++++++........ .........+.|++.|+.|      +|+|+||+||+   +.....+||+|||.|+.
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIl---i~~~~~~KL~DFG~a~~  149 (299)
T d1ua2a_          82 METDLEVIIKDNSLVLTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLL---LDENGVLKLADFGLAKS  149 (299)
T ss_dssp             CSEEHHHHHTTCCSSCCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECCCGGGST
T ss_pred             hcchHHhhhhhcccCCCHHHHHHHHHHHHHHHHHhhccceecccCCcceEE---ecCCCccccccCccccc
Confidence            99877665554333 2445566778889999888      47999999999   88889999999999974

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9e-27  Score=162.40  Aligned_cols=139  Identities=24%  Similarity=0.288  Sum_probs=108.1

Q ss_pred             hcCCcccceecccCceeEEEEEe-C-CC--cEEEEEeccCC---CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcc
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-A-DE--RIVAVKKSKVV---GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVP   85 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~-~~--~~~avk~~~~~---~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~   85 (167)
                      .++|++.+.||+|+||.||+|.. . ++  ..||+|.+...   .....+.+.+|+.+++.++||||+++++++.+ +..
T Consensus         7 ~~d~~~~~~iG~G~fg~Vy~~~~~~~~~~~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l~H~nIv~~~g~~~~-~~~   85 (273)
T d1u46a_           7 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT-PPM   85 (273)
T ss_dssp             GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-SSC
T ss_pred             hHHeEEEEEEecCCCeEEEEEEEECCCCcEEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-cch
Confidence            46799999999999999999984 2 23  36899987543   23345678999999999999999999999965 467


Q ss_pred             eEEEecCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+||+++|++.+.+.....  ........+.+++.|+.|      +|+|+|+.||+   ++.+..++++|||+++.
T Consensus        86 ~lv~e~~~~~~l~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIl---l~~~~~vkl~DfGl~~~  160 (273)
T d1u46a_          86 KMVTELAPLGSLLDRLRKHQGHFLLGTLSRYAVQVAEGMGYLESKRFIHRDLAARNLL---LATRDLVKIGDFGLMRA  160 (273)
T ss_dssp             EEEEECCTTCBHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEE---EEETTEEEECCCTTCEE
T ss_pred             heeeeeecCcchhhhhhcccCCCCHHHHHHHHHHHHHHHHHhhhCCEeeeeecHHHhc---cccccceeeccchhhhh
Confidence            899999999999998876543  444555668888999988      47899999999   88889999999999873

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.8e-27  Score=167.28  Aligned_cols=138  Identities=18%  Similarity=0.154  Sum_probs=110.4

Q ss_pred             hcCCcccc-eecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhc-CCCCceeeeeeeeec----CCcc
Q 040049           13 TDHLNVNI-VLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQ-INYRNVVKLLGCCLE----TEVP   85 (167)
Q Consensus        13 ~~~~~~~~-~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~-l~h~~i~~l~~~~~~----~~~~   85 (167)
                      .++|.+.. .||+|+||.||+|.. .+++.||+|.++.     .....+|+.++.+ .+||||+++++++.+    ...+
T Consensus        10 ~~~y~i~~~~lG~G~fg~Vy~a~~~~~~~~vAiK~i~~-----~~~~~~E~~~~~~~~~hpnIv~l~~~~~~~~~~~~~~   84 (335)
T d2ozaa1          10 IDDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENLYAGRKCL   84 (335)
T ss_dssp             GGTEEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEEETTEEEE
T ss_pred             ccCEEEeeEEeeeccCeEEEEEEECCCCCEEEEEEECC-----cHHHHHHHHHHHHhcCCCCCCeEEEEEeecccCCCEE
Confidence            56898875 599999999999994 6799999998853     2456789987654 589999999999865    3568


Q ss_pred             eEEEecCCCCCHHHHHhhcC---cchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQN---EDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~---~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+|||||+||+|.+++.+..   .+....+..+.+++.|+.|+      |||+||+||++..-.....++++|||+|+.
T Consensus        85 ~ivmEy~~gg~L~~~i~~~~~~~l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~  163 (335)
T d2ozaa1          85 LIVMECLDGGELFSRIQDRGDQAFTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKE  163 (335)
T ss_dssp             EEEEECCCSEEHHHHHHSCSCCCEEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEE
T ss_pred             EEEEECCCCCcHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeee
Confidence            99999999999999998753   24556677788999999884      799999999822112345689999999873

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-26  Score=163.19  Aligned_cols=144  Identities=24%  Similarity=0.345  Sum_probs=119.4

Q ss_pred             HHhhhcCCcccceecccCceeEEEEEe------CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049            9 LDKATDHLNVNIVLGQGGQGTVHKGML------ADERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus         9 ~~~~~~~~~~~~~ig~g~~g~v~~~~~------~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      +....++|.+.+.||+|+||.||+|.+      .++..+|+|.++... ......+.+|+.+++.+ +||||+++++++.
T Consensus        18 ~~~~~~~~~l~~~iG~G~fg~Vy~a~~~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l~~HpnIv~~~g~~~   97 (311)
T d1t46a_          18 WEFPRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACT   97 (311)
T ss_dssp             GBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccCCHHHeEEeeEEeecCCeEEEEEEEeccccCCCCeEEEEEEECcccCHHHHHHHHHHHHHHHhccCCCCEEEEEEEEe
Confidence            334568899999999999999999974      245789999986543 34556789999999998 6999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-------------------chHhhHHHHHHHHcCchh------hhhcccchhHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-------------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIW  135 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-------------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~  135 (167)
                      +++..+++||||++|+|.++++....                   ..........+++.|+.+      +|+|+|++||+
T Consensus        98 ~~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl  177 (311)
T d1t46a_          98 IGGPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNIL  177 (311)
T ss_dssp             SSSSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE
T ss_pred             eCCEEEEEEEcCCCCCHHHHHHhccccccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeeccccccccc
Confidence            99999999999999999999986531                   223444567788888887      47999999999


Q ss_pred             HHhhhccCCccccccchhhh
Q 040049          136 KQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       136 ~~~~~~~~~~~l~df~~~~~  155 (167)
                         ++....++++|||.++.
T Consensus       178 ---~~~~~~~ki~DfG~~~~  194 (311)
T d1t46a_         178 ---LTHGRITKICDFGLARD  194 (311)
T ss_dssp             ---EETTTEEEECCCGGGSC
T ss_pred             ---ccccCcccccccchhee
Confidence               88889999999999984

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5e-26  Score=161.28  Aligned_cols=134  Identities=27%  Similarity=0.456  Sum_probs=110.7

Q ss_pred             cceecccCceeEEEEEeCC----CcEEEEEeccCC-CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-CCcceEEEecC
Q 040049           19 NIVLGQGGQGTVHKGMLAD----ERIVAVKKSKVV-GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-TEVPLLVYEYI   92 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~~----~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-~~~~~lv~e~~   92 (167)
                      .++||+|+||+||+|.+..    ...||+|.++.. .....+.+.+|+.++++++||||+++++++.+ ++..++|||||
T Consensus        32 ~~~iG~G~fg~Vyk~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~~~g~~~~~~~~~~lv~E~~  111 (311)
T d1r0pa_          32 NEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRSEGSPLVVLPYM  111 (311)
T ss_dssp             EEEEEEETTEEEEEEEECC----CEEEEEEEECCCCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEETTTEEEEEEECC
T ss_pred             ceEEeecCCeEEEEEEEECCCCEEEEEEEEEECcccCHHHHHHHHHHHHHHHhCCCCCEeEEeEEEEecCCceEEEEEEe
Confidence            4689999999999998532    235899988643 44556789999999999999999999999875 45789999999


Q ss_pred             CCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           93 PNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        93 ~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++|+|.+++.....  ..........+++.|+.|      +|+|+|+.||+   ++.+..++|+|||+++.
T Consensus       112 ~~g~l~~~~~~~~~~~~~~~~~~i~~qia~gL~~lH~~~iiHrDLK~~NIL---l~~~~~~kL~DFG~~~~  179 (311)
T d1r0pa_         112 KHGDLRNFIRNETHNPTVKDLIGFGLQVAKGMKFLASKKFVHRDLAARNCM---LDEKFTVKVADFGLARD  179 (311)
T ss_dssp             TTCBHHHHHHCTTCCCBHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE---ECTTCCEEECSSGGGCC
T ss_pred             ecCchhhhhccccccchHHHHHHHHHHHHHhhhhhcccCcccCCccHHhEe---ECCCCCEEEecccchhh
Confidence            99999999886653  233445667888888887      57899999999   88889999999999974

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-26  Score=160.94  Aligned_cols=139  Identities=19%  Similarity=0.244  Sum_probs=120.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCCcceEEEe
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      ++|.+++.||+|+||+||+|.+ .+++.||+|.++..  .......+.+|+.+++.++||||+++++++.+.+..+++++
T Consensus         2 ~ry~~i~~LG~G~fg~V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~niv~~~~~~~~~~~~~iv~~   81 (292)
T d1unla_           2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSDKKLTLVFE   81 (292)
T ss_dssp             CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEECSSEEEEEEE
T ss_pred             CCCEeeeEEecCcCeEEEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHhcCcCCEEeeccccccccceeEEee
Confidence            5799999999999999999995 57899999987544  33456788999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ++.++++..++..... .....+..+.|++.|+.|      +|+|+||+||+   +.....++++|||.++.
T Consensus        82 ~~~~~~l~~~~~~~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIl---i~~~~~~kl~DFG~a~~  150 (292)
T d1unla_          82 FCDQDLKKYFDSCNGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLL---INRNGELKLANFGLARA  150 (292)
T ss_dssp             CCSEEHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             eccccccccccccccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccc---cccCCceeeeecchhhc
Confidence            9999998887776543 445566778888888888      47999999999   78888999999999984

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-26  Score=165.04  Aligned_cols=141  Identities=16%  Similarity=0.145  Sum_probs=114.9

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC-cccHHHHHHHHHHHhcCCCCceeeeeeeeecCCc----c
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG-KGKLDEFINKVVILSQINYRNVVKLLGCCLETEV----P   85 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~~----~   85 (167)
                      .+++|.+++.||+|+||+||+|.. .+|+.||+|.+.... ....+.+++|+.+++.++|||++++++++.....    .
T Consensus         6 i~~rY~~~~~LG~G~fg~Vy~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l~hp~iv~~~~~~~~~~~~~~~~   85 (345)
T d1pmea_           6 VGPRYTNLSYIGEGAYGMVCSAYDNVNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKD   85 (345)
T ss_dssp             CCTTEEEEEECC---CCCEEEEEETTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCC
T ss_pred             cCCCeEEEEEEeeccCeEEEEEEECCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHcCCCCCCcEEEEEeeccccccce
Confidence            456799999999999999999984 689999999986543 3445678999999999999999999999966532    3


Q ss_pred             eEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           86 LLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      +++++++.+|+|.+++.....+.......+.|++.|+.|      +|||+||+||+   +.+...++|+|||.|+.
T Consensus        86 ~~l~~~~~~g~L~~~l~~~~l~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NIL---l~~~~~~kl~DfG~a~~  158 (345)
T d1pmea_          86 VYLVTHLMGADLYKLLKTQHLSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLL---LNTTCDLKICDFGLARV  158 (345)
T ss_dssp             EEEEEECCCEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             EEEEEeecCCchhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEE---ECCCCCEEEcccCceee
Confidence            445566778999999987766667777788899999988      47999999999   88888999999999874

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.3e-26  Score=160.04  Aligned_cols=148  Identities=25%  Similarity=0.317  Sum_probs=110.8

Q ss_pred             cHHHHHhhhcCCcccceecccCceeEEEEEeC------CCcEEEEEeccCC-CcccHHHHHHHHHHHhcC-CCCceeeee
Q 040049            5 SAKELDKATDHLNVNIVLGQGGQGTVHKGMLA------DERIVAVKKSKVV-GKGKLDEFINKVVILSQI-NYRNVVKLL   76 (167)
Q Consensus         5 ~~~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~------~~~~~avk~~~~~-~~~~~~~~~~e~~~~~~l-~h~~i~~l~   76 (167)
                      ..+++....++|.+.+.||+|+||.||+|...      +++.||+|.+... .....+.+.+|...+..+ +||||+.++
T Consensus         4 ~~~~wei~~~~y~~~~~iG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~~h~~iv~~~   83 (299)
T d1ywna1           4 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL   83 (299)
T ss_dssp             CHHHHBCCGGGEEEEEEEEECSSCEEEEEEEESTTSSSCEEEEEEEEC----CHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred             CCccccccHHHEEEeeEEeecCCeEEEEEEEcCCCcccCCeEEEEEEEccccCcHHHHHHHHHHHHHHhhcCCCeEEEee
Confidence            34555566789999999999999999999842      2468999988643 334456677888777776 689999999


Q ss_pred             eeeecC-CcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccch
Q 040049           77 GCCLET-EVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKN  132 (167)
Q Consensus        77 ~~~~~~-~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~  132 (167)
                      +++..+ +.++++||||++|+|.+++.....                 ........+.|++.|+.|      +|+|+||+
T Consensus        84 ~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~  163 (299)
T d1ywna1          84 GACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAAR  163 (299)
T ss_dssp             EEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC-----------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGG
T ss_pred             eeeccCCCeEEEEEEecCCCcHHHHHHhccccccccccchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCcc
Confidence            987654 568999999999999999986431                 233455567788899988      47999999


Q ss_pred             hHHHHhhhccCCccccccchhhh
Q 040049          133 KIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus       133 ~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ||+   ++.+..+||+|||+|+.
T Consensus       164 NIL---l~~~~~~Kl~DFGla~~  183 (299)
T d1ywna1         164 NIL---LSEKNVVKICDFGLARD  183 (299)
T ss_dssp             GEE---ECGGGCEEECC------
T ss_pred             cee---ECCCCcEEEccCcchhh
Confidence            999   88889999999999973

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.2e-26  Score=163.45  Aligned_cols=140  Identities=16%  Similarity=0.123  Sum_probs=113.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecCC-----
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLETE-----   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~~-----   83 (167)
                      ..++|.+++.||+|+||.||+|.. .+|+.||+|.+...  .....+.+.+|+.+++.++|||++++++++...+     
T Consensus        16 ~~~~Y~~i~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~hpniv~l~~~~~~~~~~~~~   95 (346)
T d1cm8a_          16 VRAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDF   95 (346)
T ss_dssp             CBSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTC
T ss_pred             cCCcEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhcCCCCeeEEEEEeccCcccccc
Confidence            357899999999999999999995 57999999998653  2334567899999999999999999999997654     


Q ss_pred             -cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 -VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 -~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                       .+++||||+ +++|...++.........+..+.+++.|+.++      |+|+||+||+   +..+..++++|||.|+.
T Consensus        96 ~~~~lv~e~~-~~~l~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL---~~~~~~~kl~Dfg~a~~  170 (346)
T d1cm8a_          96 TDFYLVMPFM-GTDLGKLMKHEKLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLA---VNEDCELKILDFGLARQ  170 (346)
T ss_dssp             CCCEEEEECC-SEEHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTCCEEECCCTTCEE
T ss_pred             ceEEEEEecc-cccHHHHHHhccccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhh---cccccccccccccceec
Confidence             469999999 56888888766667777788889999999884      6999999999   88899999999999874

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.2e-25  Score=158.63  Aligned_cols=143  Identities=22%  Similarity=0.311  Sum_probs=112.4

Q ss_pred             hhhcCCcccceecccCceeEEEEEe-CC-------CcEEEEEeccCCC-cccHHHHHHHHHHHhcC-CCCceeeeeeeee
Q 040049           11 KATDHLNVNIVLGQGGQGTVHKGML-AD-------ERIVAVKKSKVVG-KGKLDEFINKVVILSQI-NYRNVVKLLGCCL   80 (167)
Q Consensus        11 ~~~~~~~~~~~ig~g~~g~v~~~~~-~~-------~~~~avk~~~~~~-~~~~~~~~~e~~~~~~l-~h~~i~~l~~~~~   80 (167)
                      ...++|.+.+.||+|+||.||+|+. ..       +..||+|.+.... ......+.+|...+.++ +||||+++++++.
T Consensus        10 i~~~~~~l~~~iG~G~fg~Vy~~~~~~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~~~HpnIv~~~~~~~   89 (299)
T d1fgka_          10 LPRDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACT   89 (299)
T ss_dssp             CCGGGEEEEEECC-----CEEEEEEECC----CCCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred             ccHHHeEEeeEEeecCCcEEEEEEEcCCCcccccCceEEEEEEECcccChHHHHHHHHHHHHHHHhcCCCeEEecccccc
Confidence            3567899999999999999999983 22       2468999886543 34456788898888887 7999999999999


Q ss_pred             cCCcceEEEecCCCCCHHHHHhhcCc-----------------chHhhHHHHHHHHcCchh------hhhcccchhHHHH
Q 040049           81 ETEVPLLVYEYIPNGNLSDYLHEQNE-----------------DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQ  137 (167)
Q Consensus        81 ~~~~~~lv~e~~~~g~L~~~i~~~~~-----------------~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~  137 (167)
                      +++..++||||+++|+|.+++.....                 ........+.+++.|+.|      +|+|+|++|++  
T Consensus        90 ~~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiL--  167 (299)
T d1fgka_          90 QDGPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVL--  167 (299)
T ss_dssp             SSSSCEEEECCCTTCBHHHHHHTTSCC------------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEE--
T ss_pred             cCCeEEEEEEccCCCcHHHHHHhhcCCccccccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeeccccee--
Confidence            99999999999999999999986531                 233445567788888887      57999999999  


Q ss_pred             hhhccCCccccccchhhhh
Q 040049          138 QLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus       138 ~~~~~~~~~l~df~~~~~~  156 (167)
                       +..+..+|++|||.++..
T Consensus       168 -l~~~~~~kl~dfg~~~~~  185 (299)
T d1fgka_         168 -VTEDNVMKIADFGLARDI  185 (299)
T ss_dssp             -ECTTCCEEECSTTCCCCG
T ss_pred             -ecCCCCeEeccchhhccc
Confidence             888899999999998844

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-26  Score=160.75  Aligned_cols=140  Identities=21%  Similarity=0.261  Sum_probs=113.9

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC---c---ccHHHHHHHHHHHhcCC--CCceeeeeeeeecCC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG---K---GKLDEFINKVVILSQIN--YRNVVKLLGCCLETE   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~---~---~~~~~~~~e~~~~~~l~--h~~i~~l~~~~~~~~   83 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.||+|.+....   .   .....+.+|+.+++.++  ||||+++++++.+++
T Consensus         3 ~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~~~   82 (273)
T d1xwsa_           3 ESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFERPD   82 (273)
T ss_dssp             TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEECSS
T ss_pred             CCeEEEeEEEeeCCCeEEEEEEECCCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEeeCC
Confidence            46799999999999999999994 579999999875321   1   11233568999999886  899999999999999


Q ss_pred             cceEEEecCCC-CCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-cCCccccccchhh
Q 040049           84 VPLLVYEYIPN-GNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-GLAPKRKKFEEEK  154 (167)
Q Consensus        84 ~~~lv~e~~~~-g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-~~~~~l~df~~~~  154 (167)
                      ..++|+|++.+ +++.+.+..... .....+..+.|++.|+.+      +|+|+||+||+   +.. ...++++|||.|+
T Consensus        83 ~~~lv~e~~~~~~~l~~~~~~~~~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIl---l~~~~~~vkl~DFG~a~  159 (273)
T d1xwsa_          83 SFVLILERPEPVQDLFDFITERGALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENIL---IDLNRGELKLIDFGSGA  159 (273)
T ss_dssp             EEEEEEECCSSEEEHHHHHHHHCSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEE---EETTTTEEEECCCTTCE
T ss_pred             eEEEEEEeccCcchHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceE---EecCCCeEEECccccce
Confidence            99999999976 678888776543 556677778899999988      47999999999   664 4688999999987


Q ss_pred             h
Q 040049          155 W  155 (167)
Q Consensus       155 ~  155 (167)
                      .
T Consensus       160 ~  160 (273)
T d1xwsa_         160 L  160 (273)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=6.4e-26  Score=161.44  Aligned_cols=140  Identities=18%  Similarity=0.125  Sum_probs=118.3

Q ss_pred             hcCCcccceecccCceeEEEEEe-C---CCcEEEEEeccCC----CcccHHHHHHHHHHHhcCCC-CceeeeeeeeecCC
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-A---DERIVAVKKSKVV----GKGKLDEFINKVVILSQINY-RNVVKLLGCCLETE   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~---~~~~~avk~~~~~----~~~~~~~~~~e~~~~~~l~h-~~i~~l~~~~~~~~   83 (167)
                      .++|.+++.||+|+||.||+|.. .   +|+.||+|.++..    +....+.+.+|+.+++.++| |||+++++++.+.+
T Consensus        23 l~~y~~~~~IG~G~fg~Vy~~~~~~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~h~pnIv~~~~~~~~~~  102 (322)
T d1vzoa_          23 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTET  102 (322)
T ss_dssp             GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEETT
T ss_pred             hhceEEEEEEecCCCeEEEEEEECccCCCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhccCCCeEEEeeeeeccCC
Confidence            36799999999999999999974 2   4789999987542    22344667899999999966 89999999999999


Q ss_pred             cceEEEecCCCCCHHHHHhhcCc-chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNE-DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~-~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..++++||+.+|+|.+.+..... +....+..+.|++.|+.+      +|+|+||+|++   ++.+..++|+|||.++.
T Consensus       103 ~~~~v~e~~~~~~L~~~i~~~~~~~e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nil---l~~~~~vkL~DFG~a~~  178 (322)
T d1vzoa_         103 KLHLILDYINGGELFTHLSQRERFTEHEVQIYVGEIVLALEHLHKLGIIYRDIKLENIL---LDSNGHVVLTDFGLSKE  178 (322)
T ss_dssp             EEEEEECCCCSCBHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTSCEEESCSSEEEE
T ss_pred             ceeeeeecccccHHHHHHHhcccccHHHHHHHHHHHHHHHHHhhcCCEEeccCCcccee---ecCCCCEEEeeccchhh
Confidence            99999999999999999987754 445566667788888877      57899999999   88889999999999874

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3e-25  Score=159.48  Aligned_cols=141  Identities=16%  Similarity=0.093  Sum_probs=114.5

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCC--cccHHHHHHHHHHHhcCCCCceeeeeeeeecC-----C
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVG--KGKLDEFINKVVILSQINYRNVVKLLGCCLET-----E   83 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~--~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~-----~   83 (167)
                      ..++|.+.+.||+|+||+||+|.. .+|+.||+|.+....  ....+.+.+|+.+++.++|||++++++++...     .
T Consensus        16 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~h~~iv~~~~~~~~~~~~~~~   95 (348)
T d2gfsa1          16 VPERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEF   95 (348)
T ss_dssp             EETTEEEEEECGGGTTSSEEEEEETTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSTTTC
T ss_pred             CCCCeEEEEEEecCCCeEEEEEEECCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhcCCCCeeeEEEEEeeccccccC
Confidence            357899999999999999999994 689999999986543  23445788999999999999999999998643     2


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhccCCccccccchhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      ..+++++++.+|+|.+++..........+..+.+++.|+.++      |+|+|++||+   +..+..++++|||.+..
T Consensus        96 ~~~~i~~~~~gg~L~~~~~~~~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NIL---i~~~~~~kl~dfg~a~~  170 (348)
T d2gfsa1          96 NDVYLVTHLMGADLNNIVKCQKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLA---VNEDCELKILDFGLARH  170 (348)
T ss_dssp             CCCEEEEECCSEEHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECCC----C
T ss_pred             ceEEEEEeecCCchhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCcccccCCcccc---ccccccccccccchhcc
Confidence            345667778899999999876666677777888999999885      6899999999   88888999999999874

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=99.91  E-value=4.9e-25  Score=157.28  Aligned_cols=136  Identities=16%  Similarity=0.201  Sum_probs=112.2

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecC--CcceE
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLET--EVPLL   87 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~--~~~~l   87 (167)
                      ..++|.+++.||+|+||.||+|.. .+++.||+|.++..   ..+.+.+|+.+++.+. ||||+++++++...  ..+++
T Consensus        33 ~~d~y~i~~~LG~G~fg~V~~a~~~~~~~~vAiK~i~~~---~~~~~~~Ei~il~~l~~hpnIv~~~~~~~~~~~~~~~~  109 (328)
T d3bqca1          33 NQDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKPV---KKKKIKREIKILENLRGGPNIITLADIVKDPVSRTPAL  109 (328)
T ss_dssp             CGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSS---CHHHHHHHHHHHHHHTTSTTBCCEEEEEECTTTCSEEE
T ss_pred             CCcCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEECHH---HHHHHHHHHHHHHhccCCCCCcEEEEEEEecCCCceeE
Confidence            346799999999999999999995 67999999998643   3467889999999985 99999999999754  56899


Q ss_pred             EEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchhh------hhcccchhHHHHhhhc-cCCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPRL------KRKKKKNKIWKQQLLK-GLAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~~------h~~~~~~~~~~~~~~~-~~~~~l~df~~~~~  155 (167)
                      |||||++++|.+..+  ..........+.|++.||.|+      |+|+||+||+   +.. +..++++|||.|+.
T Consensus       110 v~e~~~~~~L~~~~~--~l~e~~i~~i~~qil~aL~~LH~~gIvHrDiKp~NIL---i~~~~~~vkl~DFG~a~~  179 (328)
T d3bqca1         110 VFEHVNNTDFKQLYQ--TLTDYDIRFYMYEILKALDYCHSMGIMHRDVKPHNVM---IDHEHRKLRLIDWGLAEF  179 (328)
T ss_dssp             EEECCCSCBGGGTTT--SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEE---EETTTTEEEECCGGGCEE
T ss_pred             EEeecCCCcHHHHhc--CCCHHHHHHHHHHHHHHHHHHhhcccccccccccceE---EcCCCCeeeeccccccee
Confidence            999999999977643  234555667788899999885      7999999998   664 44689999999873

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.5e-25  Score=155.67  Aligned_cols=141  Identities=18%  Similarity=0.171  Sum_probs=111.7

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeec-------
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLE-------   81 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~-------   81 (167)
                      ..++|.+++.||+|+||+||+|.. .+|+.||+|.+...  .......+.+|+.+++.++|||++++++.+..       
T Consensus         8 ~~~rY~i~~~LG~G~fg~Vy~a~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l~h~nii~~~~~~~~~~~~~~~   87 (318)
T d3blha1           8 EVSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNR   87 (318)
T ss_dssp             BGGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-------
T ss_pred             ccCCEEEEEEEecCcCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHhcCCCccceEeeeecccccccc
Confidence            468899999999999999999995 58999999987543  33445678899999999999999999998855       


Q ss_pred             -CCcceEEEecCCCCCHHHHHhhcC-cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchh
Q 040049           82 -TEVPLLVYEYIPNGNLSDYLHEQN-EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEE  153 (167)
Q Consensus        82 -~~~~~lv~e~~~~g~L~~~i~~~~-~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~  153 (167)
                       .+.+++++|++.++++........ ......+....|++.|+.|      +|+|+|++||+   +.++..++++|||++
T Consensus        88 ~~~~~~iv~e~~~~~~~~~~~~~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NIL---l~~~~~~kl~dfg~~  164 (318)
T d3blha1          88 CKGSIYLVFDFCEHDLAGLLSNVLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVL---ITRDGVLKLADFGLA  164 (318)
T ss_dssp             ---CEEEEEECCCEEHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEE---ECTTSCEEECCCTTC
T ss_pred             cCceEEEEEeccCCCccchhhhcccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchhee---ecCCCcEEeeeccee
Confidence             345789999998765544433322 2455566677888888887      57999999999   888899999999998


Q ss_pred             hh
Q 040049          154 KW  155 (167)
Q Consensus       154 ~~  155 (167)
                      +.
T Consensus       165 ~~  166 (318)
T d3blha1         165 RA  166 (318)
T ss_dssp             EE
T ss_pred             ee
Confidence            63

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.5e-24  Score=154.86  Aligned_cols=133  Identities=18%  Similarity=0.178  Sum_probs=103.6

Q ss_pred             CCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------CcceE
Q 040049           15 HLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNVVKLLGCCLET------EVPLL   87 (167)
Q Consensus        15 ~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~~~~l   87 (167)
                      +|...++||+|+||+||+|.. .+++.||+|.+......    ..+|+.+++.++||||+++++++...      .++++
T Consensus        21 ~Y~~~k~LG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~----~~~Ei~il~~l~h~niv~~~~~~~~~~~~~~~~~~~l   96 (350)
T d1q5ka_          21 SYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDKRF----KNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLNL   96 (350)
T ss_dssp             EEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSSS----CCHHHHHHHHCCCTTBCCEEEEEEEC--CCSCCEEEE
T ss_pred             CcEeeeEEeeCcCeEEEEEEECCCCCEEEEEEECccchH----HHHHHHHHHhcCCCCCCcEEEEEEecCccCCceEEEE
Confidence            688889999999999999995 57999999988643322    23799999999999999999998543      34789


Q ss_pred             EEecCCCCCHHHHHhh----c-CcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhcc-CCccccccchhhh
Q 040049           88 VYEYIPNGNLSDYLHE----Q-NEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKG-LAPKRKKFEEEKW  155 (167)
Q Consensus        88 v~e~~~~g~L~~~i~~----~-~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~-~~~~l~df~~~~~  155 (167)
                      |||||+++ +.+.+..    . ..+.......+.|++.|+.|      +|+|+|++||+   +..+ ..++|+|||+++.
T Consensus        97 v~Ey~~~~-~~~~l~~~~~~~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NIL---l~~~~~~~kl~DFG~a~~  172 (350)
T d1q5ka_          97 VLDYVPET-VYRVARHYSRAKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLL---LDPDTAVLKLCDFGSAKQ  172 (350)
T ss_dssp             EEECCSEE-HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ECTTTCCEEECCCTTCEE
T ss_pred             EEeccCCc-cHHHHHhhhhccCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEE---EecCCCceeEecccchhh
Confidence            99999875 4444432    1 12444566678888888888      47999999999   7655 4789999999873

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7e-24  Score=152.75  Aligned_cols=139  Identities=20%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCC--CcccHHHHHHHHHHHhcCCCCceeeeeeeeecC------C
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVV--GKGKLDEFINKVVILSQINYRNVVKLLGCCLET------E   83 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~--~~~~~~~~~~e~~~~~~l~h~~i~~l~~~~~~~------~   83 (167)
                      .++|.+++.||+|+||+||+|.. .+|+.||+|.+...  .......+.+|+.+++.++||||+++++++...      .
T Consensus        16 ~~~Y~i~~~LG~G~fg~V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l~hpnIv~~~~~f~~~~~~~~~~   95 (355)
T d2b1pa1          16 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ   95 (355)
T ss_dssp             ETTEEEEEECSCC--CEEEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred             cCCeEEEEEeecCcCeEEEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhcCCCCeeEEEEEEecccccccCc
Confidence            47899999999999999999995 57999999998644  233455688999999999999999999999643      5


Q ss_pred             cceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhhh
Q 040049           84 VPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKWR  156 (167)
Q Consensus        84 ~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~~  156 (167)
                      .+|+|||||.+ ++.+.+.. ..+....+..+.+++.|+.+      +|+|+||+|++   +..+...+++|||.++..
T Consensus        96 ~~~iv~Ey~~~-~l~~~~~~-~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil---~~~~~~~kl~df~~~~~~  169 (355)
T d2b1pa1          96 DVYLVMELMDA-NLCQVIQM-ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIV---VKSDCTLKILDFGLARTA  169 (355)
T ss_dssp             EEEEEEECCSE-EHHHHHTS-CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEE---ECTTCCEEECCCCC----
T ss_pred             eeEEEEeccch-HHHHhhhc-CCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccc---cccccceeeechhhhhcc
Confidence            68999999976 55555543 33556677778888888887      57999999999   888889999999987743

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.1e-24  Score=149.76  Aligned_cols=141  Identities=21%  Similarity=0.232  Sum_probs=107.4

Q ss_pred             hhcCCcccceecccCceeEEEEEe-CC-CcEEEEEeccCC--CcccHHHHHHHHHHHhc---CCCCceeeeeeeeec---
Q 040049           12 ATDHLNVNIVLGQGGQGTVHKGML-AD-ERIVAVKKSKVV--GKGKLDEFINKVVILSQ---INYRNVVKLLGCCLE---   81 (167)
Q Consensus        12 ~~~~~~~~~~ig~g~~g~v~~~~~-~~-~~~~avk~~~~~--~~~~~~~~~~e~~~~~~---l~h~~i~~l~~~~~~---   81 (167)
                      ..++|++++.||+|+||.||+|.. .+ ++.||+|.+...  .......+.+|+.+++.   ++||||+++++++..   
T Consensus         5 ~~~~Y~i~~~LG~G~fg~V~~a~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~   84 (305)
T d1blxa_           5 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT   84 (305)
T ss_dssp             GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred             CcCCEEEEEEEecccCeEEEEEEEECCCCEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeeccccc
Confidence            467999999999999999999985 44 667999987542  22223345567766655   489999999999853   


Q ss_pred             --CCcceEEEecCCCCCHHHHHhhcC--cchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccc
Q 040049           82 --TEVPLLVYEYIPNGNLSDYLHEQN--EDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFE  151 (167)
Q Consensus        82 --~~~~~lv~e~~~~g~L~~~i~~~~--~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~  151 (167)
                        ....++++|++.++++........  .+....+..+.|++.|+.|      +|+|+||+||+   +.....++++|||
T Consensus        85 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NIL---i~~~~~~kl~dfg  161 (305)
T d1blxa_          85 DRETKLTLVFEHVDQDLTTYLDKVPEPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNIL---VTSSGQIKLADFG  161 (305)
T ss_dssp             SSEEEEEEEEECCSCBHHHHHHHSCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEE---ECTTCCEEECSCC
T ss_pred             ccCceEEEEEEeccCCchhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEE---EcCCCCeeecchh
Confidence              246789999998876654444332  2445566678889999888      57999999999   7888899999999


Q ss_pred             hhhh
Q 040049          152 EEKW  155 (167)
Q Consensus       152 ~~~~  155 (167)
                      .++.
T Consensus       162 ~~~~  165 (305)
T d1blxa_         162 LARI  165 (305)
T ss_dssp             SCCC
T ss_pred             hhhh
Confidence            9874

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.88  E-value=3.6e-23  Score=145.43  Aligned_cols=137  Identities=14%  Similarity=0.108  Sum_probs=108.8

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCC-CceeeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINY-RNVVKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h-~~i~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|.+.+.||+|+||.||+|.. .+++.+|+|.+....  ....+.+|++.++.+.| +|++.+++++......++|||
T Consensus         4 g~~Y~i~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~~~~~~~vme   81 (293)
T d1csna_           4 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQEGLHNVLVID   81 (293)
T ss_dssp             TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcccc--CcHHHHHHHHHHHHhcCCCCCCEEEEEeecCCccEEEEE
Confidence            46899999999999999999995 578999999875432  22346678888888865 899999999999999999999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhc-----cCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLK-----GLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~-----~~~~~l~df~~~~~  155 (167)
                      |+ +++|.+.+.....  ........+.+++.++.+      +|+|+||+||+   +..     ...++++|||.|+.
T Consensus        82 ~~-~~~l~~~~~~~~~~~~~~~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nil---i~~~~~~~~~~vkl~DFG~a~~  155 (293)
T d1csna_          82 LL-GPSLEDLLDLCGRKFSVKTVAMAAKQMLARVQSIHEKSLVYRDIKPDNFL---IGRPNSKNANMIYVVDFGMVKF  155 (293)
T ss_dssp             CC-CCBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEE---ECCSSSTTTTCEEECCCTTCEE
T ss_pred             ec-CCCHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHCCceeccCCcccee---ecCcccccCCceEEcccceeEE
Confidence            99 6799999886543  333444456677777766      68999999998   542     45689999999974

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=3.1e-23  Score=146.12  Aligned_cols=140  Identities=17%  Similarity=0.098  Sum_probs=107.6

Q ss_pred             hcCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-eeeeeeeecCCcceEEEe
Q 040049           13 TDHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-VKLLGCCLETEVPLLVYE   90 (167)
Q Consensus        13 ~~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-~~l~~~~~~~~~~~lv~e   90 (167)
                      .++|++.+.||+|+||.||+|.. .+++.||+|.+.....  ...+..|+++++.++|+++ +.+..+....+..++|||
T Consensus         6 g~rY~l~~~iG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~i~~~l~~~~~i~~~~~~~~~~~~~~ivme   83 (299)
T d1ckia_           6 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGAEGDYNVMVME   83 (299)
T ss_dssp             TTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEESCTT--SCCHHHHHHHHHHSTTSTTCCCEEEEEEETTEEEEEEE
T ss_pred             CCEEEEeEEEeeCCCcEEEEEEECCCCCEEEEEEEchhcc--CHHHHHHHHHHHHccCCCcccEEEEEEecCCEEEEEEE
Confidence            35799999999999999999985 5789999998764322  2357789999999986655 555566677788899999


Q ss_pred             cCCCCCHHHHHhhcCc--chHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccchhhh
Q 040049           91 YIPNGNLSDYLHEQNE--DFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEEEKW  155 (167)
Q Consensus        91 ~~~~g~L~~~i~~~~~--~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~~~~  155 (167)
                      |+. +++.+.+.....  ........+.+++.|+.+      +|||+||+||++.....+..++++|||.|+.
T Consensus        84 ~~~-~~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~  155 (299)
T d1ckia_          84 LLG-PSLEDLFNFCSRKFSLKTVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKK  155 (299)
T ss_dssp             CCC-CBHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEE
T ss_pred             EcC-CchhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCccee
Confidence            995 477776665432  445555667788888877      5799999999854445567889999999984

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.72  E-value=3.3e-18  Score=112.82  Aligned_cols=124  Identities=12%  Similarity=0.065  Sum_probs=86.4

Q ss_pred             cccceecccCceeEEEEEeCCCcEEEEEeccCCCcc------------------cHHHHHHHHHHHhcCCCCceeeeeee
Q 040049           17 NVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKG------------------KLDEFINKVVILSQINYRNVVKLLGC   78 (167)
Q Consensus        17 ~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~------------------~~~~~~~e~~~~~~l~h~~i~~l~~~   78 (167)
                      .+.++||+|+||.||+|...+|+.||+|.++.....                  .......|...+..+.|++++..+++
T Consensus         3 ~vg~~IG~G~~g~Vy~a~~~~g~~vAvKi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~v~~~~~~   82 (191)
T d1zara2           3 AIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQGLAVPKVYAW   82 (191)
T ss_dssp             EEEEEEEECSSEEEEEEEETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTTTSSSCCEEEE
T ss_pred             hhCCEeeeCcceEEEEEECCCCCEEEEEEEecccchhhhhhhhhhhccHHHHHHHHHHHHHHHHHHHHccCCCcceEEEe
Confidence            467899999999999999878999999976432110                  11234567788888999998887755


Q ss_pred             eecCCcceEEEecCCCCCHHHHHhhcCcchHhhHHHHHHHHcCchh------hhhcccchhHHHHhhhccCCccccccch
Q 040049           79 CLETEVPLLVYEYIPNGNLSDYLHEQNEDFVKDVGFILSRRGGIPR------LKRKKKKNKIWKQQLLKGLAPKRKKFEE  152 (167)
Q Consensus        79 ~~~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~~~~~i~~~l~~------~h~~~~~~~~~~~~~~~~~~~~l~df~~  152 (167)
                      .    ..+++|||+++..+.+.      ..........+++.++.+      +|+|+||+||+   +.++ .++++|||.
T Consensus        83 ~----~~~lvme~~~~~~~~~l------~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NIL---v~~~-~~~liDFG~  148 (191)
T d1zara2          83 E----GNAVLMELIDAKELYRV------RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVL---VSEE-GIWIIDFPQ  148 (191)
T ss_dssp             E----TTEEEEECCCCEEGGGC------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEE---EETT-EEEECCCTT
T ss_pred             c----CCEEEEEeeccccccch------hhHHHHHHHHHHHHHHHHHhhCCEEEccCChhhee---eeCC-CEEEEECCC
Confidence            3    24799999988654321      112223344555555555      68999999998   5544 467789998


Q ss_pred             hh
Q 040049          153 EK  154 (167)
Q Consensus       153 ~~  154 (167)
                      |.
T Consensus       149 a~  150 (191)
T d1zara2         149 SV  150 (191)
T ss_dssp             CE
T ss_pred             cc
Confidence            75

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=7.8e-18  Score=120.97  Aligned_cols=138  Identities=15%  Similarity=0.098  Sum_probs=98.0

Q ss_pred             cCCcccceecccCceeEEEEEe-CCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-----------CCceeeeeeeeec
Q 040049           14 DHLNVNIVLGQGGQGTVHKGML-ADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-----------YRNVVKLLGCCLE   81 (167)
Q Consensus        14 ~~~~~~~~ig~g~~g~v~~~~~-~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-----------h~~i~~l~~~~~~   81 (167)
                      ++|.+++.||+|+||+||+|+. .+|+.||+|+++.. ....+.+.+|+.+++.+.           |+||+++++++..
T Consensus        13 ~rY~i~~~LG~G~fg~Vy~~~~~~~g~~vAvKvi~~~-~~~~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~   91 (362)
T d1q8ya_          13 ARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGD-KVYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNH   91 (362)
T ss_dssp             TTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSC-HHHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEE
T ss_pred             CcEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEecc-ccchHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeee
Confidence            4699999999999999999995 68999999998643 233456778888777654           5789999988865


Q ss_pred             C--CcceEEEecCCCCC-HHHHHhhcC---cchHhhHHHHHHHHcCchh-------hhhcccchhHHHHhhhccC-----
Q 040049           82 T--EVPLLVYEYIPNGN-LSDYLHEQN---EDFVKDVGFILSRRGGIPR-------LKRKKKKNKIWKQQLLKGL-----  143 (167)
Q Consensus        82 ~--~~~~lv~e~~~~g~-L~~~i~~~~---~~~~~~~~~~~~i~~~l~~-------~h~~~~~~~~~~~~~~~~~-----  143 (167)
                      .  ...++++.++..+. .........   ......+..+.+++.|+.+       +|+|+|++||+   +....     
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIl---l~~~~~~~~~  168 (362)
T d1q8ya_          92 KGPNGVHVVMVFEVLGENLLALIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVL---MEIVDSPENL  168 (362)
T ss_dssp             EETTEEEEEEEECCCCEEHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEE---EEEEETTTTE
T ss_pred             ccccceeeeeeecccccccccccccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHee---eeccCccccc
Confidence            4  44556666554433 222222221   2444556667788777765       57899999998   55432     


Q ss_pred             -Cccccccchhhh
Q 040049          144 -APKRKKFEEEKW  155 (167)
Q Consensus       144 -~~~l~df~~~~~  155 (167)
                       .++++|||.|..
T Consensus       169 ~~~kl~dfg~s~~  181 (362)
T d1q8ya_         169 IQIKIADLGNACW  181 (362)
T ss_dssp             EEEEECCCTTCEE
T ss_pred             ceeeEeecccccc
Confidence             378899999874

>d1j7la_ d.144.1.6 (A:) Type IIIa 3',5"-aminoglycoside phosphotransferase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Type IIIa 3',5"-aminoglycoside phosphotransferase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.94  E-value=1.2e-05  Score=53.89  Aligned_cols=93  Identities=14%  Similarity=-0.026  Sum_probs=61.4

Q ss_pred             HHHHhhhcCCcccceecccCceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC-CCceeeeeeeeecCCcc
Q 040049            7 KELDKATDHLNVNIVLGQGGQGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN-YRNVVKLLGCCLETEVP   85 (167)
Q Consensus         7 ~~~~~~~~~~~~~~~ig~g~~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~-h~~i~~l~~~~~~~~~~   85 (167)
                      .++......|.+++..+.++.+.||+... +++.+.+|............+.+|...+..+. +--+.+++.+....+..
T Consensus         7 ~~l~~~~~~~~~~~~~~G~s~~~v~rv~~-~~~~~vlk~~~~~~~~~~~~~~~E~~~l~~l~~~vpvP~vl~~~~~~~~~   85 (263)
T d1j7la_           7 PELKKLIEKYRCVKDTEGMSPAKVYKLVG-ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWS   85 (263)
T ss_dssp             HHHHHHHTTSEEEECSCCCSSSEEEEEEC-SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEETTEE
T ss_pred             HHHHHhhhceEEEEcCCCCCCCcEEEEEe-CCCeEEEEEcCCCcccchhhHHHHHHHHHHHhccCCCCcEEEEEecCCce
Confidence            45666667788777655555678998764 55667788765443333344567777766553 32345667777778888


Q ss_pred             eEEEecCCCCCHHHH
Q 040049           86 LLVYEYIPNGNLSDY  100 (167)
Q Consensus        86 ~lv~e~~~~g~L~~~  100 (167)
                      ++||++++|.++.+.
T Consensus        86 ~lv~~~l~G~~~~~~  100 (263)
T d1j7la_          86 NLLMSEADGVLCSEE  100 (263)
T ss_dssp             EEEEECCSSEEHHHH
T ss_pred             EEEEEeccccccccc
Confidence            999999988776543

>d1nd4a_ d.144.1.6 (A:) Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase) {Bacteria (Klebsiella pneumoniae) [TaxId: 573]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Aminoglycoside 3'-phosphotransferase IIa (Kanamycin kinase)
species: Bacteria (Klebsiella pneumoniae) [TaxId: 573]

Probab=97.33  E-value=0.00054  Score=45.27  Aligned_cols=74  Identities=16%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             eecccC-ceeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCC--CCceeeeeeeeecCCcceEEEecCCCCCH
Q 040049           21 VLGQGG-QGTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQIN--YRNVVKLLGCCLETEVPLLVYEYIPNGNL   97 (167)
Q Consensus        21 ~ig~g~-~g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~--h~~i~~l~~~~~~~~~~~lv~e~~~~g~L   97 (167)
                      .+..|. -+.||+....++..+.+|.......   ..+..|...++.+.  .-.+.+++.+..+++..++++++++|.++
T Consensus        17 ~~~~G~s~~~v~r~~~~~~~~~vlK~~~~~~~---~~l~~E~~~l~~L~~~gvpvP~v~~~~~~~~~~~~v~~~i~G~~~   93 (255)
T d1nd4a_          17 QQTIGCSDAAVFRLSAQGRPVLFVKTDLSGAL---NELQDEAARLSWLATTGVPCAAVLDVVTEAGRDWLLLGEVPGQDL   93 (255)
T ss_dssp             ECSCTTSSCEEEEEECTTSCCEEEEEECSCTT---SCHHHHHHHHHHHHTTTCCBCCEEEEEECSSCEEEEEECCSSEET
T ss_pred             EcCCcccCCeEEEEEeCCCCEEEEEeCCccCH---hHHHHHHHHHHHHHhcCCCCCceeeecccccceEEEEEeeecccc
Confidence            334444 3678988876777788887654333   23455666666543  22356677777777888999999987554

>d2pula1 d.144.1.6 (A:5-396) Methylthioribose kinase MtnK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Methylthioribose kinase MtnK
species: Bacillus subtilis [TaxId: 1423]

Probab=96.10  E-value=0.0071  Score=42.67  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             cceecccCceeEEEEEeC-CCcEEEEEeccC----CC---cccHHHHHHHHHHHhcCC--CCc-eeeeeeeeecCCcceE
Q 040049           19 NIVLGQGGQGTVHKGMLA-DERIVAVKKSKV----VG---KGKLDEFINKVVILSQIN--YRN-VVKLLGCCLETEVPLL   87 (167)
Q Consensus        19 ~~~ig~g~~g~v~~~~~~-~~~~~avk~~~~----~~---~~~~~~~~~e~~~~~~l~--h~~-i~~l~~~~~~~~~~~l   87 (167)
                      .+.+|.|....||+.... +++.+++|...+    ..   +....+...|.+.+..+.  -|. +++++.+  +++..++
T Consensus        31 ~~eig~G~~N~vfrV~~~~~~~svivKqa~p~~r~~g~~~~~~~~R~~~E~~~L~~~~~~~p~~vP~v~~~--d~~~~~l  108 (392)
T d2pula1          31 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYS--DTEMAVT  108 (392)
T ss_dssp             EEECCSSSSEEEEEEEC----CEEEEEEECCGGGC--CCCCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEE--ETTTTEE
T ss_pred             EEEeCCCceEeEEEEEeCCCCeEEEEecCCchhcccCCCCCCCHHHHHHHHHHHHHhhhhCCCCcceEEEE--cCCCCEE
Confidence            356899999999999843 467888885432    11   123344556777776552  233 3444433  4556789


Q ss_pred             EEecCCCCC
Q 040049           88 VYEYIPNGN   96 (167)
Q Consensus        88 v~e~~~~g~   96 (167)
                      +||++++..
T Consensus       109 vmE~L~~~~  117 (392)
T d2pula1         109 VMEDLSHLK  117 (392)
T ss_dssp             EECCCTTSE
T ss_pred             EEeccCCcc
Confidence            999997643

>d1zyla1 d.144.1.6 (A:4-328) RdoA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: RdoA
species: Escherichia coli [TaxId: 562]

Probab=88.68  E-value=0.11  Score=35.26  Aligned_cols=66  Identities=15%  Similarity=0.058  Sum_probs=39.6

Q ss_pred             eeEEEEEeCCCcEEEEEeccCCCcccHHHHHHHHHHHhcCCCCce-----eeee--eeeecCCcceEEEecCCC
Q 040049           28 GTVHKGMLADERIVAVKKSKVVGKGKLDEFINKVVILSQINYRNV-----VKLL--GCCLETEVPLLVYEYIPN   94 (167)
Q Consensus        28 g~v~~~~~~~~~~~avk~~~~~~~~~~~~~~~e~~~~~~l~h~~i-----~~l~--~~~~~~~~~~lv~e~~~~   94 (167)
                      -.||++...+|..+++|.-++. ....+++..|...+..+...++     +..-  ......+..+.++++++|
T Consensus        36 N~vy~v~~~dg~~~VlK~~rp~-~~s~~~i~~E~~~l~~L~~~gipv~~p~~~~g~~~~~~~~~~~~l~~~~~G  108 (325)
T d1zyla1          36 NRVYQFQDEDRRRFVVKFYRPE-RWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGG  108 (325)
T ss_dssp             SEEEEECCTTCCCEEEEEECTT-TSCHHHHHHHHHHHHHHHHTTCSBCCCCCBTTBSCEEETTEEEEEEECCCC
T ss_pred             ceeEEEEcCCCCEEEEEEeCCC-CCCHHHHHHHHHHHHHHHhcCCCCCCceecCCCeeeeeeeEEEEEEeecCC
Confidence            3589988778888999986543 3344666777776665532111     1111  122334567788888865

>d2ppqa1 d.144.1.6 (A:5-320) Homoserine kinase ThrB {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: APH phosphotransferases
domain: Homoserine kinase ThrB
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=87.36  E-value=1.7  Score=28.70  Aligned_cols=44  Identities=9%  Similarity=0.114  Sum_probs=27.6

Q ss_pred             ccHHHHHhhhcCCcccce-----ecccCceeEEEEEeCCCcEEEEEeccC
Q 040049            4 FSAKELDKATDHLNVNIV-----LGQGGQGTVHKGMLADERIVAVKKSKV   48 (167)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~-----ig~g~~g~v~~~~~~~~~~~avk~~~~   48 (167)
                      .+-+++....++|.+.+.     |..|.--..|.....+| .+++|+...
T Consensus         3 ls~~el~~~l~~Y~lg~~~~~~~i~~G~~N~ny~v~t~~g-~yVLri~~~   51 (316)
T d2ppqa1           3 ITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTTKD-PLILTLYEK   51 (316)
T ss_dssp             CCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEESSC-CEEEEEECC
T ss_pred             CCHHHHHHHHHhCCCCCceEeecCCCCcccCeEEEEECCC-cEEEEEcCC
Confidence            456788888888877543     33454466788775444 478887754