Query 040051
Match_columns 590
No_of_seqs 260 out of 3002
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 04:38:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00906 2A0303 cationic amin 100.0 1.5E-65 3.2E-70 551.1 54.6 496 69-566 23-557 (557)
2 PRK15049 L-asparagine permease 100.0 1.8E-56 3.9E-61 476.7 49.1 365 69-448 23-408 (499)
3 COG0833 LysP Amino acid transp 100.0 2.7E-57 5.9E-62 457.3 36.7 399 71-540 41-467 (541)
4 PRK11387 S-methylmethionine tr 100.0 3.5E-55 7.6E-60 466.2 46.2 422 69-562 9-458 (471)
5 PRK10746 putative transport pr 100.0 2.1E-54 4.6E-59 457.3 47.4 424 68-566 4-455 (461)
6 PRK10249 phenylalanine transpo 100.0 1.6E-54 3.6E-59 458.6 46.3 364 68-448 15-397 (458)
7 COG1113 AnsP Gamma-aminobutyra 100.0 4.5E-54 9.9E-59 425.2 37.3 424 68-566 7-456 (462)
8 TIGR00908 2A0305 ethanolamine 100.0 3.9E-53 8.5E-58 448.1 46.0 422 69-568 2-438 (442)
9 PRK10836 lysine transporter; P 100.0 8.2E-53 1.8E-57 449.7 46.4 400 68-539 9-437 (489)
10 PRK11357 frlA putative fructos 100.0 3.9E-53 8.4E-58 448.2 43.3 422 69-564 3-439 (445)
11 PRK10238 aromatic amino acid t 100.0 1.5E-52 3.2E-57 443.4 46.6 364 69-449 7-389 (456)
12 TIGR00909 2A0306 amino acid tr 100.0 1.4E-52 3E-57 442.9 46.3 425 72-559 1-429 (429)
13 KOG1286 Amino acid transporter 100.0 1.4E-54 3E-59 455.2 29.9 481 70-565 26-553 (554)
14 TIGR01773 GABAperm gamma-amino 100.0 4E-52 8.7E-57 441.4 47.8 366 69-451 7-393 (452)
15 PRK10655 potE putrescine trans 100.0 2E-52 4.2E-57 442.3 45.0 419 72-566 4-434 (438)
16 PRK10644 arginine:agmatin anti 100.0 4E-52 8.6E-57 440.2 46.4 416 69-562 3-431 (445)
17 PRK10580 proY putative proline 100.0 6.5E-52 1.4E-56 439.7 47.9 419 68-560 3-447 (457)
18 PRK11049 D-alanine/D-serine/gl 100.0 1E-51 2.2E-56 438.9 46.8 366 69-451 15-404 (469)
19 PRK10197 gamma-aminobutyrate t 100.0 1.1E-50 2.4E-55 427.9 45.1 400 84-558 2-426 (446)
20 PRK10435 cadB lysine/cadaverin 100.0 5.8E-51 1.3E-55 429.4 42.8 358 72-444 3-377 (435)
21 TIGR00911 2A0308 L-type amino 100.0 7.1E-51 1.5E-55 436.8 43.2 377 68-457 36-426 (501)
22 KOG1289 Amino acid transporter 100.0 1.4E-51 2.9E-56 414.8 33.8 459 53-570 29-519 (550)
23 TIGR00913 2A0310 amino acid pe 100.0 3.2E-50 6.9E-55 430.2 46.5 360 73-449 1-395 (478)
24 TIGR03428 ureacarb_perm permea 100.0 3.1E-50 6.8E-55 428.6 46.2 414 68-509 7-447 (475)
25 TIGR00905 2A0302 transporter, 100.0 9.8E-50 2.1E-54 424.6 45.1 418 72-563 5-439 (473)
26 KOG1287 Amino acid transporter 100.0 5.2E-51 1.1E-55 410.9 32.3 403 68-482 6-420 (479)
27 PRK11021 putative transporter; 100.0 5.6E-49 1.2E-53 412.0 45.7 354 76-446 1-362 (410)
28 TIGR00907 2A0304 amino acid pe 100.0 3.1E-49 6.8E-54 422.7 43.7 441 68-564 6-479 (482)
29 TIGR00930 2a30 K-Cl cotranspor 100.0 9.1E-49 2E-53 437.9 45.5 402 70-477 72-519 (953)
30 TIGR03810 arg_ornith_anti argi 100.0 7.6E-48 1.6E-52 409.5 44.9 413 74-561 1-432 (468)
31 TIGR03813 put_Glu_GABA_T putat 100.0 1.9E-46 4.1E-51 399.8 46.4 435 74-563 1-458 (474)
32 TIGR00910 2A0307_GadC glutamat 100.0 8.6E-45 1.9E-49 387.4 46.5 403 73-510 3-431 (507)
33 PF13520 AA_permease_2: Amino 100.0 2.4E-43 5.2E-48 372.7 36.6 362 76-452 1-381 (426)
34 COG0531 PotE Amino acid transp 100.0 4.4E-42 9.4E-47 367.9 43.0 379 68-455 6-398 (466)
35 PF00324 AA_permease: Amino ac 100.0 1.3E-45 2.8E-50 394.4 14.3 360 81-451 2-397 (478)
36 PRK15238 inner membrane transp 100.0 1.9E-41 4.1E-46 362.9 46.4 405 72-506 5-460 (496)
37 KOG2082 K+/Cl- cotransporter K 100.0 5.3E-31 1.1E-35 268.9 28.8 401 73-477 111-627 (1075)
38 KOG1288 Amino acid transporter 100.0 7.1E-31 1.5E-35 266.1 22.7 396 75-476 66-503 (945)
39 TIGR00837 araaP aromatic amino 100.0 3.1E-28 6.7E-33 253.0 30.9 341 83-445 4-355 (381)
40 KOG2083 Na+/K+ symporter [Inor 99.9 1E-24 2.2E-29 220.5 19.2 392 73-477 27-448 (643)
41 TIGR00912 2A0309 spore germina 99.9 3.7E-22 8E-27 205.7 34.9 286 75-377 2-294 (359)
42 PHA02764 hypothetical protein; 99.9 7.5E-20 1.6E-24 171.3 24.1 277 67-399 5-285 (399)
43 TIGR00796 livcs branched-chain 99.9 2.1E-18 4.6E-23 174.5 36.1 336 86-456 5-364 (378)
44 PF03222 Trp_Tyr_perm: Tryptop 99.8 1.2E-16 2.5E-21 164.7 37.6 291 74-377 1-303 (394)
45 TIGR00814 stp serine transport 99.8 1.2E-16 2.7E-21 164.0 30.8 287 80-380 7-312 (397)
46 PRK10483 tryptophan permease; 99.8 1.8E-15 3.9E-20 154.2 35.4 347 72-441 7-365 (414)
47 PRK09664 tryptophan permease T 99.8 4.6E-15 9.9E-20 151.0 35.2 344 77-442 10-367 (415)
48 PRK15132 tyrosine transporter 99.7 2.8E-14 6.1E-19 146.2 37.9 291 77-380 4-303 (403)
49 COG0814 SdaC Amino acid permea 99.7 5.8E-14 1.3E-18 145.8 36.0 286 70-366 3-302 (415)
50 PF03845 Spore_permease: Spore 99.7 3.4E-14 7.3E-19 143.9 29.3 287 75-379 1-292 (320)
51 PRK13629 threonine/serine tran 99.7 5.9E-13 1.3E-17 135.7 34.5 288 83-381 26-348 (443)
52 PF01235 Na_Ala_symp: Sodium:a 99.4 3.5E-10 7.5E-15 115.1 28.4 292 70-379 13-338 (416)
53 KOG1303 Amino acid transporter 99.4 6.7E-10 1.5E-14 114.6 28.7 281 71-367 33-323 (437)
54 KOG1304 Amino acid transporter 99.3 3.3E-09 7.1E-14 107.8 29.1 350 73-451 44-417 (449)
55 TIGR00835 agcS amino acid carr 99.3 8.8E-09 1.9E-13 105.6 32.4 286 74-378 45-364 (425)
56 PLN03074 auxin influx permease 99.2 1.9E-08 4.1E-13 106.4 32.4 238 73-328 43-294 (473)
57 COG1115 AlsT Na+/alanine sympo 99.2 4.3E-08 9.3E-13 98.7 32.8 291 71-379 58-382 (452)
58 PRK11375 allantoin permease; P 99.2 3.2E-07 6.9E-12 97.6 39.9 332 68-418 19-367 (484)
59 PTZ00206 amino acid transporte 99.2 6.3E-08 1.4E-12 102.9 32.6 245 76-328 60-319 (467)
60 COG1457 CodB Purine-cytosine p 99.0 3.3E-06 7.1E-11 86.7 35.5 237 110-372 54-294 (442)
61 COG3949 Uncharacterized membra 99.0 2.3E-06 4.9E-11 82.7 31.6 265 83-370 10-280 (349)
62 PF13906 AA_permease_C: C-term 99.0 5.9E-10 1.3E-14 77.2 5.2 51 514-564 1-51 (51)
63 PRK11017 codB cytosine permeas 98.9 3.8E-05 8.1E-10 80.2 40.1 219 72-312 7-229 (404)
64 COG1953 FUI1 Cytosine/uracil/t 98.8 5.7E-05 1.2E-09 77.8 35.5 330 68-415 33-378 (497)
65 PRK09442 panF sodium/panthothe 98.8 0.00019 4E-09 77.1 41.0 287 73-381 40-350 (483)
66 PF01490 Aa_trans: Transmembra 98.7 5.1E-10 1.1E-14 117.8 -4.3 355 74-448 1-376 (409)
67 TIGR00800 ncs1 NCS1 nucleoside 98.6 0.00022 4.8E-09 75.6 35.5 242 68-317 6-258 (442)
68 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.0014 3E-08 70.4 40.5 283 73-375 35-346 (487)
69 TIGR00813 sss transporter, SSS 98.6 0.00017 3.6E-09 75.8 32.7 284 73-375 2-322 (407)
70 TIGR02119 panF sodium/pantothe 98.5 0.0024 5.3E-08 68.4 41.0 284 73-374 39-345 (471)
71 PRK10484 putative transporter; 98.4 0.0049 1.1E-07 66.9 43.8 293 73-375 37-355 (523)
72 PRK00701 manganese transport p 98.4 0.0021 4.5E-08 67.6 34.9 68 119-186 72-141 (439)
73 PRK15419 proline:sodium sympor 98.4 0.0056 1.2E-07 66.0 40.9 283 73-374 39-352 (502)
74 PRK12488 acetate permease; Pro 98.4 0.0037 8.1E-08 68.1 37.3 224 73-315 66-309 (549)
75 PF00474 SSF: Sodium:solute sy 98.4 3.7E-05 8.1E-10 80.7 20.7 290 73-383 5-325 (406)
76 COG0733 Na+-dependent transpor 98.3 0.0027 5.8E-08 64.9 32.1 287 76-367 8-323 (439)
77 PF05525 Branch_AA_trans: Bran 98.3 0.004 8.7E-08 64.4 33.3 311 87-433 14-345 (427)
78 TIGR03648 Na_symport_lg probab 98.3 0.0047 1E-07 67.4 34.6 148 73-240 31-182 (552)
79 COG0591 PutP Na+/proline sympo 98.3 0.0055 1.2E-07 65.7 34.0 282 73-375 37-353 (493)
80 TIGR02358 thia_cytX probable h 98.2 0.01 2.3E-07 61.6 39.3 244 110-378 31-275 (386)
81 TIGR02711 symport_actP cation/ 98.2 0.0072 1.6E-07 65.8 34.7 282 73-373 66-380 (549)
82 KOG1305 Amino acid transporter 98.2 0.00059 1.3E-08 70.6 24.1 248 73-329 3-258 (411)
83 PF01566 Nramp: Natural resist 98.2 0.0023 5E-08 65.9 27.9 244 119-379 20-285 (358)
84 PRK09395 actP acetate permease 98.1 0.024 5.3E-07 61.8 40.3 154 73-244 68-223 (551)
85 PLN00151 potassium transporter 98.0 0.0016 3.5E-08 71.0 24.0 283 204-502 274-573 (852)
86 PF02705 K_trans: K+ potassium 98.0 0.0023 4.9E-08 67.5 24.5 264 159-446 100-378 (534)
87 COG1914 MntH Mn2+ and Fe2+ tra 98.0 0.026 5.5E-07 58.4 37.2 122 114-253 50-173 (416)
88 PF02133 Transp_cyt_pur: Perme 97.9 0.0006 1.3E-08 72.5 18.4 240 72-316 5-251 (440)
89 PF02028 BCCT: BCCT family tra 97.8 0.08 1.7E-06 56.2 30.6 349 72-442 71-480 (485)
90 COG4147 DhlC Predicted symport 97.7 0.089 1.9E-06 54.1 27.6 181 124-320 90-290 (529)
91 PRK15433 branched-chain amino 97.6 0.14 3.1E-06 53.1 38.7 308 88-433 20-348 (439)
92 PLN00150 potassium ion transpo 97.5 0.02 4.3E-07 62.8 22.9 283 204-502 214-513 (779)
93 PLN00149 potassium transporter 97.4 0.029 6.3E-07 61.6 22.6 285 205-502 199-500 (779)
94 TIGR00794 kup potassium uptake 97.4 0.017 3.7E-07 62.8 20.7 278 204-496 168-462 (688)
95 PRK10745 trkD potassium transp 97.4 0.079 1.7E-06 56.8 24.6 307 160-496 112-436 (622)
96 PLN00148 potassium transporter 97.4 0.019 4E-07 63.0 20.1 283 204-502 197-496 (785)
97 COG1114 BrnQ Branched-chain am 97.2 0.34 7.3E-06 49.3 32.6 316 83-433 12-347 (431)
98 PRK09928 choline transport pro 96.7 1.3 2.8E-05 48.6 28.3 91 348-442 407-500 (679)
99 PRK09950 putative transporter; 96.7 1.2 2.6E-05 47.4 27.0 24 73-96 81-104 (506)
100 COG4145 PanF Na+/panthothenate 96.6 0.97 2.1E-05 45.2 29.3 246 113-374 73-344 (473)
101 COG1292 BetT Choline-glycine b 96.5 1.4 3.1E-05 46.5 25.2 98 337-442 392-493 (537)
102 KOG2466 Uridine permease/thiam 96.5 1 2.2E-05 46.6 22.2 300 68-390 48-381 (572)
103 COG3158 Kup K+ transporter [In 95.5 4.2 9E-05 43.1 22.8 329 90-446 30-394 (627)
104 KOG4303 Vesicular inhibitory a 95.3 0.043 9.3E-07 53.6 6.3 233 72-322 113-357 (524)
105 PF00209 SNF: Sodium:neurotran 95.1 6.1 0.00013 43.0 28.1 100 218-320 194-303 (523)
106 PRK03356 L-carnitine/gamma-but 94.9 6.7 0.00014 42.0 28.1 24 73-96 83-106 (504)
107 TIGR00842 bcct choline/carniti 94.7 6.6 0.00014 41.4 28.1 23 73-95 34-56 (453)
108 KOG1287 Amino acid transporter 94.0 0.68 1.5E-05 48.5 12.0 65 494-560 372-440 (479)
109 TIGR01197 nramp NRAMP (natural 93.6 10 0.00022 39.3 36.0 43 336-378 282-324 (390)
110 COG4146 Predicted symporter [G 92.2 14 0.0003 37.2 27.8 238 140-390 104-367 (571)
111 KOG3659 Sodium-neurotransmitte 92.0 20 0.00044 38.5 32.1 114 206-320 256-377 (629)
112 PF05297 Herpes_LMP1: Herpesvi 90.7 0.06 1.3E-06 50.9 -0.6 19 390-408 13-31 (381)
113 KOG3660 Sodium-neurotransmitte 90.6 31 0.00067 38.1 32.6 60 77-136 39-102 (629)
114 KOG2349 Na+:iodide/myo-inosito 89.5 8.5 0.00018 41.6 14.1 223 139-377 108-362 (585)
115 TIGR00910 2A0307_GadC glutamat 87.2 48 0.001 35.9 21.1 64 501-564 383-465 (507)
116 PF02554 CstA: Carbon starvati 84.3 51 0.0011 33.6 21.6 103 77-181 53-156 (376)
117 PRK15015 carbon starvation pro 84.2 71 0.0015 35.1 36.3 95 81-178 88-184 (701)
118 PF12794 MscS_TM: Mechanosensi 83.8 53 0.0012 33.4 17.1 36 285-320 28-67 (340)
119 COG2271 UhpC Sugar phosphate p 83.1 10 0.00023 39.2 10.2 48 360-416 68-115 (448)
120 PF02667 SCFA_trans: Short cha 82.9 66 0.0014 33.8 16.2 98 296-415 14-111 (453)
121 PF08507 COPI_assoc: COPI asso 76.8 25 0.00054 30.4 9.4 20 538-557 85-104 (136)
122 PF05961 Chordopox_A13L: Chord 76.6 4.5 9.6E-05 29.5 3.7 30 542-571 6-35 (68)
123 COG4736 CcoQ Cbb3-type cytochr 72.9 3.9 8.5E-05 29.5 2.7 10 576-585 45-54 (60)
124 PTZ00206 amino acid transporte 72.7 48 0.001 35.4 12.3 56 334-389 121-176 (467)
125 PHA03049 IMV membrane protein; 72.5 5.6 0.00012 28.9 3.4 28 542-569 6-33 (68)
126 KOG1286 Amino acid transporter 67.8 1.9E+02 0.0042 31.6 19.9 28 509-536 431-458 (554)
127 PHA02902 putative IMV membrane 65.4 19 0.00042 25.9 4.8 26 544-569 9-34 (70)
128 PF01102 Glycophorin_A: Glycop 63.7 12 0.00026 31.5 4.2 20 544-563 74-93 (122)
129 PHA02681 ORF089 virion membran 56.1 34 0.00073 26.1 5.0 22 541-562 6-27 (92)
130 PF07214 DUF1418: Protein of u 55.9 98 0.0021 24.7 7.7 22 494-515 19-40 (96)
131 PHA03048 IMV membrane protein; 54.9 72 0.0016 24.9 6.6 22 543-564 51-72 (93)
132 COG3247 HdeD Uncharacterized c 54.8 1.7E+02 0.0037 26.7 15.8 39 395-433 15-53 (185)
133 TIGR00366 conserved hypothetic 52.1 3.1E+02 0.0067 28.9 15.8 98 296-415 11-108 (438)
134 PRK11281 hypothetical protein; 50.7 5.2E+02 0.011 31.1 16.1 24 294-317 537-560 (1113)
135 COG1966 CstA Carbon starvation 50.5 3.6E+02 0.0078 29.2 31.2 101 78-180 54-155 (575)
136 COG5505 Predicted integral mem 50.2 34 0.00074 33.5 5.3 25 394-418 27-51 (384)
137 PF05525 Branch_AA_trans: Bran 46.8 3.7E+02 0.0081 28.3 14.5 95 142-251 264-358 (427)
138 PF03595 SLAC1: Voltage-depend 46.5 2.9E+02 0.0063 27.7 12.1 23 417-439 30-52 (330)
139 TIGR00913 2A0310 amino acid pe 46.0 2.1E+02 0.0046 30.5 11.5 16 547-562 448-463 (478)
140 PF03806 ABG_transport: AbgT p 45.9 4.1E+02 0.0089 28.5 14.5 98 115-229 301-404 (502)
141 PLN00411 nodulin MtN21 family 45.4 3.6E+02 0.0077 27.7 14.4 21 518-538 288-308 (358)
142 PRK15433 branched-chain amino 44.6 4.1E+02 0.0088 28.1 15.0 92 143-250 269-360 (439)
143 KOG1304 Amino acid transporter 43.3 4.3E+02 0.0093 28.0 12.5 86 343-438 133-219 (449)
144 TIGR00837 araaP aromatic amino 42.7 3.9E+02 0.0085 27.4 24.8 56 394-450 308-363 (381)
145 COG0109 CyoE Polyprenyltransfe 41.3 3.7E+02 0.008 26.7 11.2 58 377-434 72-136 (304)
146 PF05297 Herpes_LMP1: Herpesvi 38.6 10 0.00022 36.3 0.0 48 460-507 25-75 (381)
147 PF01578 Cytochrom_C_asm: Cyto 38.5 1.9E+02 0.0042 26.9 8.7 19 424-442 4-22 (214)
148 PHA02898 virion envelope prote 35.7 1.6E+02 0.0034 23.1 5.8 22 543-564 52-73 (92)
149 COG4025 Predicted membrane pro 35.5 3.9E+02 0.0084 25.3 9.5 15 371-385 56-70 (284)
150 PF06027 DUF914: Eukaryotic pr 35.4 4.9E+02 0.011 26.4 12.3 13 546-558 293-305 (334)
151 PF09991 DUF2232: Predicted me 33.2 4.6E+02 0.01 25.5 19.8 97 348-448 157-258 (290)
152 PF06679 DUF1180: Protein of u 32.5 76 0.0017 28.3 4.4 15 543-557 99-113 (163)
153 PRK00968 tetrahydromethanopter 32.0 61 0.0013 29.9 3.7 32 289-320 204-236 (240)
154 PF05767 Pox_A14: Poxvirus vir 31.9 2.5E+02 0.0053 22.2 6.4 21 543-563 52-72 (92)
155 PF14283 DUF4366: Domain of un 31.3 26 0.00056 33.0 1.4 9 548-556 169-177 (218)
156 KOG1619 Cytochrome b [Energy p 31.3 87 0.0019 29.6 4.7 25 508-532 151-175 (245)
157 PF11998 DUF3493: Protein of u 31.0 2.2E+02 0.0047 21.7 6.0 39 285-323 6-44 (75)
158 PF14256 YwiC: YwiC-like prote 30.7 3.4E+02 0.0074 23.1 13.3 46 402-447 7-52 (129)
159 cd08766 Cyt_b561_ACYB-1_like P 30.1 3.7E+02 0.0081 23.4 9.0 75 451-529 37-124 (144)
160 TIGR00796 livcs branched-chain 28.7 6.7E+02 0.015 25.9 16.4 75 143-232 259-333 (378)
161 COG5438 Predicted multitransme 28.2 6.7E+02 0.014 25.7 13.4 31 303-333 256-286 (385)
162 COG2456 Uncharacterized conser 28.1 35 0.00077 27.6 1.4 18 546-563 76-93 (121)
163 PF05656 DUF805: Protein of un 28.0 3.5E+02 0.0075 22.4 11.8 17 433-449 58-74 (120)
164 PF15102 TMEM154: TMEM154 prot 27.3 54 0.0012 28.4 2.5 9 558-566 81-89 (146)
165 PF04211 MtrC: Tetrahydrometha 27.0 5.7E+02 0.012 24.6 10.1 20 396-415 102-121 (262)
166 PRK09804 putative cryptic C4-d 26.8 7.9E+02 0.017 26.1 12.4 21 395-415 110-130 (455)
167 TIGR03810 arg_ornith_anti argi 26.7 7.9E+02 0.017 26.1 30.1 45 272-316 204-248 (468)
168 PF11446 DUF2897: Protein of u 25.7 1.2E+02 0.0025 21.6 3.5 13 550-562 16-28 (55)
169 PF11027 DUF2615: Protein of u 25.7 1.8E+02 0.0039 23.7 5.1 22 541-562 55-76 (103)
170 PRK13108 prolipoprotein diacyl 25.5 7E+02 0.015 26.6 10.8 16 546-562 262-277 (460)
171 cd08764 Cyt_b561_CG1275_like N 25.5 5.7E+02 0.012 24.0 12.5 21 511-531 125-145 (214)
172 PF12606 RELT: Tumour necrosis 25.0 1.8E+02 0.004 20.2 4.3 7 550-556 15-21 (50)
173 PF07857 DUF1632: CEO family ( 25.0 95 0.0021 30.0 4.0 15 545-559 121-135 (254)
174 PF15050 SCIMP: SCIMP protein 24.9 59 0.0013 26.9 2.2 18 544-561 16-33 (133)
175 PF12263 DUF3611: Protein of u 24.2 5.1E+02 0.011 23.7 8.3 50 268-317 66-118 (183)
176 PF02705 K_trans: K+ potassium 23.9 2.5E+02 0.0054 30.4 7.2 15 486-500 355-369 (534)
177 PLN02680 carbon-monoxide oxyge 23.6 6.3E+02 0.014 24.1 9.0 22 511-532 145-166 (232)
178 COG4060 MtrD Tetrahydromethano 23.5 1.1E+02 0.0023 27.3 3.6 33 289-321 194-227 (230)
179 COG1272 Predicted membrane pro 23.3 6.5E+02 0.014 23.9 14.2 65 488-558 119-185 (226)
180 PF04277 OAD_gamma: Oxaloaceta 22.4 2E+02 0.0042 21.9 4.7 7 550-556 21-27 (79)
181 PF08693 SKG6: Transmembrane a 22.4 44 0.00095 21.9 0.8 16 547-562 24-39 (40)
182 PHA02680 ORF090 IMV phosphoryl 22.0 3.4E+02 0.0074 21.2 5.6 21 543-563 53-73 (91)
183 PF02009 Rifin_STEVOR: Rifin/s 21.4 35 0.00076 33.8 0.3 24 543-566 263-286 (299)
184 PLN02810 carbon-monoxide oxyge 20.8 7.3E+02 0.016 23.6 9.3 23 510-532 144-166 (231)
185 COG3949 Uncharacterized membra 20.3 9.1E+02 0.02 24.5 19.8 69 305-376 40-108 (349)
No 1
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=100.00 E-value=1.5e-65 Score=551.09 Aligned_cols=496 Identities=40% Similarity=0.639 Sum_probs=409.0
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
+++++|+++.+++++++++.++|+|+|..++..+...+||..+++|+++++..++.+++|+|+++++|++||.|.|+++.
T Consensus 23 ~~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~sGg~Y~y~~~~ 102 (557)
T TIGR00906 23 ESKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPKAGSAYLYSYVT 102 (557)
T ss_pred ccchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeeHHHH
Confidence 45699999999999999999999999999998876558999999999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc-ccc--ccccCchhHHHHHHHHHHHHHHhhchhh
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIH-TNL--REGYNLLDPIAVAVLATAATIASISTRK 225 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 225 (590)
+||.+||++||.++++|....+..+.+++.|+..+++.....+... ... +........++++++++++.+|++|+|.
T Consensus 103 ~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~ 182 (557)
T TIGR00906 103 VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKE 182 (557)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhH
Confidence 9999999999999999999999999999999988775422111110 000 1000123467777888889999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC--------CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCC
Q 040051 226 TSVLNWIASAINTVVILFVIIVGFAHADASNLK--------PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSR 297 (590)
Q Consensus 226 ~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~--------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 297 (590)
+++++.+++.++++.++++++.++.+.+.+|+. ++.|+++.+++.++..++|+|.|+|++++++||+|||+|
T Consensus 183 s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r 262 (557)
T TIGR00906 183 SAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQR 262 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccc
Confidence 999999999999999988888888776666654 567778888999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051 298 DIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTH 377 (590)
Q Consensus 298 ~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 377 (590)
|+|||++.++.+++++|++..+++...+|+++++.++|+..+++..+.++...++.++.+++.+++.++.+++.+|++|+
T Consensus 263 ~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~~sRil~a 342 (557)
T TIGR00906 263 AIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFPLPRVIYA 342 (557)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999988888889999999888889999999999999999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC-c---
Q 040051 378 IARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITP-R--- 453 (590)
Q Consensus 378 ~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~--- 453 (590)
|||||.+|++|+|+|||+++|++|+++.++++.++.++.+++.+.++.+++.++.|.+.+++++++|++++.... +
T Consensus 343 marDGlLP~~fakv~~r~~tP~~Ail~~~iv~~il~~~~~~~~l~~l~sig~ll~y~lv~~~~l~lR~~~~~~~~~~~~~ 422 (557)
T TIGR00906 343 MARDGLLFKWLAQINSKTKTPINATVVSGAIAALMAFLFDLKALVDLLSIGTLLAYSLVAACVLILRYQPGLVYGQAKDT 422 (557)
T ss_pred HHcCCCccHHHhccCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccc
Confidence 999999999999999999999999999999998888888999999999999999999999999998876421000 0
Q ss_pred ----------------------cchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHH--HHHHHHHHHHHHHHhhccCCC
Q 040051 454 ----------------------KNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYV--ITVPLWFLGTLGISVLLPQQR 509 (590)
Q Consensus 454 ----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 509 (590)
.+..... ....+.+ ...+...+..-...++... ....++.+..+.....+++.+
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (557)
T TIGR00906 423 DEKDTLDSWVPFTSKSESQSEGFSLRTLF-SGLILGL-SILTTYGRAAIAEEAWSIALLTLFLVLFLLVVLTIWRQPQNK 500 (557)
T ss_pred cccccccccccccccccccccchhHHHHH-HHHHHHH-HHHHHhhhhhccccchhHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 0011111 1111111 1112222221111222222 222222333333333334434
Q ss_pred CCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccc
Q 040051 510 TPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYD 566 (590)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 566 (590)
.+++||+|.+|++|.+++..|++++.+++..+|+.+.+|+++|+++|+.|++||+++
T Consensus 501 ~~~~f~~p~~p~~p~~~i~~~~~l~~~l~~~~~~~~~~w~~~g~~~y~~yg~~~s~~ 557 (557)
T TIGR00906 501 QKVAFKVPLVPFLPALSILINIFLMVQLDADTWVRFAIWMAIGFLIYFLYGIRHSLE 557 (557)
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhhhccCC
Confidence 489999999999999999999999999999999999999999999999999999874
No 2
>PRK15049 L-asparagine permease; Provisional
Probab=100.00 E-value=1.8e-56 Score=476.74 Aligned_cols=365 Identities=18% Similarity=0.311 Sum_probs=313.1
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
++++||+++.+++.++++|.+||+|+|..++..+.. +||..+++|++++++.++.+.+++||++++|++||.|+|+++.
T Consensus 23 ~~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~-aGp~~il~~li~~i~~~~v~~slaELas~~P~aGg~y~y~~~~ 101 (499)
T PRK15049 23 EEGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQM-AGPALALVYLICGLFSFFILRALGELVLHRPSSGSFVSYAREF 101 (499)
T ss_pred chhhhccCCHhHhHHHhhhccccchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 345899999999999999999999999999999877 9998888999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
+||.+||++||.+|+.|....+......+.+...+-... +.+ .+.++++++++.+.+|++|+|..++
T Consensus 102 ~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~~~~~--------~~~-----~~~~~~~~~~l~~~iN~~gvk~~~~ 168 (499)
T PRK15049 102 LGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFG--------GVP-----QWVFALAALTIVGTMNMIGVKWFAE 168 (499)
T ss_pred hCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--------CCc-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998776666666666655321100 001 3356777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---ccC--C---CC------CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccC
Q 040051 229 LNWIASAINTVVILFVIIVGFAH---ADA--S---NL------KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKN 294 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~~---~~~--~---~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 294 (590)
+|.+++++|++.++.+++.++.. .+. . ++ .++.|+|+.+++.++..++|+|.|+|.+++++||+||
T Consensus 169 i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~kn 248 (499)
T PRK15049 169 MEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKD 248 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcC
Confidence 99999999988877766655431 111 0 11 1344566666777778899999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 040051 295 PSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNAR 373 (590)
Q Consensus 295 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 373 (590)
|+|++|||+..++..++++|++..+++...+|++++.. ++|+.++++..+.++...++.+.++++.+++.++.+++.||
T Consensus 249 P~r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR 328 (499)
T PRK15049 249 PQTMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGR 328 (499)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888753 57999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 374 YTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYYV 447 (590)
Q Consensus 374 ~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 447 (590)
++|+|||||.+|++|+|+| |+++|++|++++.+++++..++ ..++.+.++.+.+.++.|.+++++.+++|++.
T Consensus 329 ~l~a~Ardg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~~~~~li~y~~~~~~~l~~R~~~ 407 (499)
T PRK15049 329 ILRSMAMGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIASWAFIIVCQMRLRKAI 407 (499)
T ss_pred HHHHHHhcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999 8899999999998876543222 35888999999999999999999999988764
Q ss_pred c
Q 040051 448 R 448 (590)
Q Consensus 448 ~ 448 (590)
+
T Consensus 408 ~ 408 (499)
T PRK15049 408 K 408 (499)
T ss_pred h
Confidence 4
No 3
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=2.7e-57 Score=457.31 Aligned_cols=399 Identities=20% Similarity=0.281 Sum_probs=357.9
Q ss_pred cccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHh
Q 040051 71 DMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIEL 149 (590)
Q Consensus 71 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~ 149 (590)
++||+|..+|+.++++|+.||+|+|+..|..+.+ +||+ ++++|++.+++.++++.+++||++.+|.+|+...|++|..
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~-aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~sGsF~~ya~rfv 119 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQ-AGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPVSGSFSTYATRFV 119 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhhhhc
Confidence 6999999999999999999999999999999988 9997 9999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
+|-+||..||.||+.|....+.+..+.+..++.+++..-+ .+.+..++++++.++|.+++|..+..
T Consensus 120 dpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~v~--------------~~~w~~iF~~~i~~iN~~~Vk~fGE~ 185 (541)
T COG0833 120 DPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDTVP--------------PWIWIAIFLVLIFLLNLFGVKGFGET 185 (541)
T ss_pred CchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCCCC--------------hHHHHHHHHHHHHHHHHhccccccee
Confidence 9999999999999999999999999999999998754311 44788899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc----cC------CCC--CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCC
Q 040051 230 NWIASAINTVVILFVIIVGFAHA----DA------SNL--KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSR 297 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~----~~------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r 297 (590)
+.++..+|++.++.+++.++... +. +.+ .+.+++|+.+++..+..+.|+|.|.|.+...++|.|||+|
T Consensus 186 Efw~s~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K 265 (541)
T COG0833 186 EFWFSSIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRK 265 (541)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchh
Confidence 99999999999998888776521 10 111 1356778999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC---------CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhh
Q 040051 298 DIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID---------PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGA 368 (590)
Q Consensus 298 ~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 368 (590)
++|||+.....++.++|++..+++...+|+++.. ..+|+..++++.|.+.++.++++.++.+++++.|+.+
T Consensus 266 ~iPkAik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~l 345 (541)
T COG0833 266 SIPKAIKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGL 345 (541)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999999998742 3469999999999999999999999999999999999
Q ss_pred hchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040051 369 LGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 369 ~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~ 442 (590)
+++||++|+||+||..||+|+|+| |+|+|++|++++.+++++-.+- ..+++|.++++++.++.|+.++++.++
T Consensus 346 YasSR~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~~i~W~~I~~shir 424 (541)
T COG0833 346 YASSRMLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSGFIAWGSICLSHIR 424 (541)
T ss_pred hHHHHHHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 8899999999999998643333 268999999999999999999999999
Q ss_pred HhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHH
Q 040051 443 RRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWL 522 (590)
Q Consensus 443 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 522 (590)
+|+..+... +...+.+||.|.+|+.
T Consensus 425 FR~A~~~QG-------------------------------------------------------~s~~~L~yks~~~p~g 449 (541)
T COG0833 425 FRRAMKAQG-------------------------------------------------------RSLDELPYKSPFGPYG 449 (541)
T ss_pred HHHHHHHcC-------------------------------------------------------CChhhcCccCCCccHH
Confidence 998644322 2234578999999999
Q ss_pred HHHHHHHHHHHHhcCChh
Q 040051 523 PSLSIATNIFLMGSLGYQ 540 (590)
Q Consensus 523 ~~~~~~~~~~~~~~~~~~ 540 (590)
|+.+++.|...+...+|.
T Consensus 450 ~~~~~~~~~li~i~q~y~ 467 (541)
T COG0833 450 PIYGLILCILILIGQGYV 467 (541)
T ss_pred HHHHHHHHHHHHHHcchh
Confidence 999999998887765443
No 4
>PRK11387 S-methylmethionine transporter; Provisional
Probab=100.00 E-value=3.5e-55 Score=466.15 Aligned_cols=422 Identities=21% Similarity=0.306 Sum_probs=348.2
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGP-AIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
.+++||+++.+++++++++.++|+|+|..++..+.. +|| +.+++|++++++.++.+++++||++++|++||.|.|+++
T Consensus 9 ~~~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~-~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~aGG~y~y~~~ 87 (471)
T PRK11387 9 AGQFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIIST-TGAAGTLLAYLIGALVVYLVMQCLGELSVAMPETGAFHVYAAR 87 (471)
T ss_pred chhhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 346899999999999999999999999999999877 887 589999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||.+||.+||.+|+++....+......+.+++.+++. .+ .+...+++.++++.+|++|+|..+
T Consensus 88 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~--------------~~~~~~~~~~~~~~in~~gvk~~~ 152 (471)
T PRK11387 88 YLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ-VP--------------VWPWCLLFCALIFGLNVVSTRFFA 152 (471)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-Cc--------------HHHHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999999999988887777666666544321 11 224455556778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-------cC------CCC--CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhc
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHA-------DA------SNL--KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEET 292 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~-------~~------~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 292 (590)
+++.++..+|++.++.+++.++... +. +++ .++.|++..+++.++..++|+|.|+|.+++++||+
T Consensus 153 ~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~ 232 (471)
T PRK11387 153 EGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGET 232 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHh
Confidence 9999999999988877666554311 00 111 12334555678888888999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhch
Q 040051 293 KNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGN 371 (590)
Q Consensus 293 k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 371 (590)
|||+||+|||++.++.+++++|++..+++....|.++.. .++|+.++++..++++...++.+.++++.+++.++.+++.
T Consensus 233 knP~r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~ 312 (471)
T PRK11387 233 ENPAKVIPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYAS 312 (471)
T ss_pred cChhhHHHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999987765 4579999999999999999999999999999999999999
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040051 372 ARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRY 445 (590)
Q Consensus 372 sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 445 (590)
||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+. ..++.+.++.+...++.|++.+++.+++|+
T Consensus 313 sR~l~a~ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~~~~li~y~~~~~~~i~lr~ 391 (471)
T PRK11387 313 GRMLWSLSNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISGFAVVAVWLSICASHFMFRR 391 (471)
T ss_pred hHHHHHHHhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999 6799999999887665443332 135667888889999999999999999888
Q ss_pred hccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHH
Q 040051 446 YVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSL 525 (590)
Q Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 525 (590)
++++.. ++..+++||.|..|+.|++
T Consensus 392 ~~~~~~-------------------------------------------------------~~~~~~~~~~~~~~~~~~l 416 (471)
T PRK11387 392 RHLRDG-------------------------------------------------------KALSELAYRAPWYPLTPIL 416 (471)
T ss_pred HHHhcC-------------------------------------------------------CCCCCCCccCCCccHHHHH
Confidence 765432 2234578899999999999
Q ss_pred HHHHHHHHHhcCChh-----hHHHHHHHHHHHHHHHHHHhhc
Q 040051 526 SIATNIFLMGSLGYQ-----AFVRFGICTLVMLVYYFFFGLH 562 (590)
Q Consensus 526 ~~~~~~~~~~~~~~~-----~~~~~~~~~~i~~~~y~~~~~~ 562 (590)
+++.+.+++...... ..+....+++++++.|.+++|+
T Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 458 (471)
T PRK11387 417 GFVLCLLACVGLAFDPSQRIALWCGIPFVALCYGAYYLTQRL 458 (471)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999887766543222 2345566677777777666543
No 5
>PRK10746 putative transport protein YifK; Provisional
Probab=100.00 E-value=2.1e-54 Score=457.28 Aligned_cols=424 Identities=19% Similarity=0.286 Sum_probs=356.0
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
.++++||+++.+|+.++++|++||+|+|..++..+.. +||..+++|++++++.++++++++||++++|++||.|+|++|
T Consensus 4 ~~~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~-aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~sGg~~~y~~~ 82 (461)
T PRK10746 4 NKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKW-AGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHR 82 (461)
T ss_pred CchHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 3457899999999999999999999999999999887 999989999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||.+||.+||.+|+.+....+.+..+.+.|++.+++.. + .+.+..+++++++.+|++|+|..+
T Consensus 83 ~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~~-~--------------~~~~~~~~~~~~~~lN~~gv~~~~ 147 (461)
T PRK10746 83 YMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPEM-A--------------QWIPALIAVALVALANLAAVRLYG 147 (461)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-c--------------hHHHHHHHHHHHHHHHHHhHHHHH
Confidence 9999999999999999999888888888888887765321 1 235666677888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc-----c---c---CCCCC---CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 228 VLNWIASAINTVVILFVIIVGFAH-----A---D---ASNLK---PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~-----~---~---~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
++|.+++.+|++.++++++.++.. . + .+|+. ++.++|+.++..++..++|+|.|+|.+++.+||+|
T Consensus 148 ~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~k 227 (461)
T PRK10746 148 EIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAK 227 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence 999999999988776666544321 1 1 12221 24456788899999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchh
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNA 372 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 372 (590)
||+|++|||+..++..+.++|++..+++...+|++++.. ++|+.++++..+.+....++++.++.+.+++.++.+++.|
T Consensus 228 nP~k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~s 307 (461)
T PRK10746 228 NPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCG 307 (461)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998864 5699999998898888889999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHH---HH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 373 RYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIA---LF-----SGLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 373 R~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
|++++|||||.+|++|+|+| |+|+|++|++++.+...+.. +. ..++.+.++++.+.++.|.+++++.+++|
T Consensus 308 R~l~~~a~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r 386 (461)
T PRK10746 308 RMLYALAKNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFR 386 (461)
T ss_pred HHHHHHHhCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 78999999998865443211 11 24788999999999999999999999999
Q ss_pred hhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHH
Q 040051 445 YYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPS 524 (590)
Q Consensus 445 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 524 (590)
+++|+. +++++||.|.+|+.++
T Consensus 387 ~~~~~~----------------------------------------------------------~~~~~~~~~~~p~~~~ 408 (461)
T PRK10746 387 RAHKAA----------------------------------------------------------IASHPFRSILFPWANY 408 (461)
T ss_pred Hhcccc----------------------------------------------------------ccCCCCcCCCccHHHH
Confidence 886531 2346788888899988
Q ss_pred HHHHHHHHHHhcC--C---hhhHHHHHHHHHHHHHHHHHHhhccccc
Q 040051 525 LSIATNIFLMGSL--G---YQAFVRFGICTLVMLVYYFFFGLHATYD 566 (590)
Q Consensus 525 ~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 566 (590)
++++.++..+..+ + ..+.+....+++++.+.|+.+++.++.|
T Consensus 409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 455 (461)
T PRK10746 409 LTMAFLICVLIGMYFNEDTRMSLFVGIIFLLAVTLIYKVFGLNRHGK 455 (461)
T ss_pred HHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 8888876663333 1 1345566666777888887777664433
No 6
>PRK10249 phenylalanine transporter; Provisional
Probab=100.00 E-value=1.6e-54 Score=458.59 Aligned_cols=364 Identities=23% Similarity=0.350 Sum_probs=318.0
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
++++++|+++.+|+.++++|.++|+|+|..++..+.. +||.++++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 15 ~~~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~-aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~~Gg~~~y~~~ 93 (458)
T PRK10249 15 QEPTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQM-AGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAYK 93 (458)
T ss_pred CchhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 4567999999999999999999999999999999877 899999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||.+||.+||.+|+.+....+.+....+.|++.+++.. + .+.+.++++++.+.+|++|+|..+
T Consensus 94 ~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~----------~-----~~~~~~~~~~l~~~lN~~gv~~~~ 158 (458)
T PRK10249 94 YWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV----------P-----TWIWAAAFFIIINAVNLVNVRLYG 158 (458)
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC----------c-----HHHHHHHHHHHHHHHHHhcchhhh
Confidence 9999999999999999998888888888888887654321 1 235677778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc---cc------CCC-C--CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCC
Q 040051 228 VLNWIASAINTVVILFVIIVGFAH---AD------ASN-L--KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNP 295 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~---~~------~~~-~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 295 (590)
++|.+++++|++.++++++.++.. .+ .++ + .++.|+++.+++.++...+|+|.|+|.+++++||+|||
T Consensus 159 ~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P 238 (458)
T PRK10249 159 ETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDP 238 (458)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCH
Confidence 999999999988776666554321 11 111 1 12345678888999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARY 374 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 374 (590)
+|++|||+..+...++++|++..+++....|+++... ++|+.++++..++++...++.+.++++.+++.++.+++.||+
T Consensus 239 ~k~iPrai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~ 318 (458)
T PRK10249 239 EKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRM 318 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988888888887653 479999999888888889999999999999999999999999
Q ss_pred HHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040051 375 TTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVR 448 (590)
Q Consensus 375 l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 448 (590)
+|++||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++.+...++.|.+.+++.+++|++++
T Consensus 319 l~a~ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~ 397 (458)
T PRK10249 319 LFGLSVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMALVVATLLLNWIMICLAHLRFRAAMR 397 (458)
T ss_pred HHHHhcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 7799999999999988766544 257889999999999999999999999887533
No 7
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=4.5e-54 Score=425.18 Aligned_cols=424 Identities=23% Similarity=0.364 Sum_probs=369.5
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
+++++||.|+.+|..++++|+.||+|+|...+..... +||+.+++|+++|++.+.++-.++||...-|++|+..+|+++
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~-AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~ 85 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAM-AGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARK 85 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhh-hCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHH
Confidence 4567999999999999999999999999999999987 999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||..||++||.||+.+++...+...+.+.|++.+++.- + .++.+++++++...+|+.++|.++
T Consensus 86 ~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v-P--------------~Wv~al~~~~l~~~~NL~sVk~FG 150 (462)
T COG1113 86 YLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV-P--------------QWVFALAAVVLLLAVNLISVKVFG 150 (462)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c--------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998543 2 458888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcc------c-----cCCCC---CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 228 VLNWIASAINTVVILFVIIVGFAH------A-----DASNL---KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~------~-----~~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
++|+++..+|+..++.+++.++.. . +.+|. .+++|+|+.+++.++..++|+|.|.|.+...++|.|
T Consensus 151 E~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~ 230 (462)
T COG1113 151 ELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAK 230 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Confidence 999999999999999888877542 1 11222 268999999999999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchh
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNA 372 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 372 (590)
||+|.+|||+......+.++|+...+++....|+++..+ ++|+...++..|.++...++++.++.+.+++.|+.+++.+
T Consensus 231 dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglysts 310 (462)
T COG1113 231 DPEKAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTS 310 (462)
T ss_pred ChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccc
Confidence 999999999999999999999999999999999998765 5699999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 373 RYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYY 446 (590)
Q Consensus 373 R~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 446 (590)
|++|++|+||..||.|+|+| |+|+|++|++++++...+-.++ ..|+.+.+..+...+..|.++.++.+++|++
T Consensus 311 RmL~~la~~g~APk~~~kls-k~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~s~~~~l~vW~~I~~s~l~~rk~ 389 (462)
T COG1113 311 RMLYSLAKQGDAPKAFAKLS-KRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSSSGLGLLFVWLMILLSQLKLRKA 389 (462)
T ss_pred hHHHHHhhcCcccHhHhhcc-ccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999 8899999999988776544444 4689999999999999999999999999985
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHH
Q 040051 447 VREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLS 526 (590)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 526 (590)
+++ ..++..||.|+.|+..++.
T Consensus 390 ~~~----------------------------------------------------------~~~~~~fkm~~~p~~~~l~ 411 (462)
T COG1113 390 KPA----------------------------------------------------------EGKKLKFKMPLYPFTNYLT 411 (462)
T ss_pred chh----------------------------------------------------------cccCcccccccccHHHHHH
Confidence 432 2344567777777777777
Q ss_pred HHHHHHHHhcC----C-hhhHHHHHHHHHHHHHHHHHHhhccccc
Q 040051 527 IATNIFLMGSL----G-YQAFVRFGICTLVMLVYYFFFGLHATYD 566 (590)
Q Consensus 527 ~~~~~~~~~~~----~-~~~~~~~~~~~~i~~~~y~~~~~~~~~~ 566 (590)
+++.++.+..| + ........+|+++-.+.|+..++|+.++
T Consensus 412 l~fl~~vlv~m~~~~~t~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 456 (462)
T COG1113 412 LAFLAFVLVLMLFDPDTRISLLVGPVWLVLLGIGYLVKRKKKARK 456 (462)
T ss_pred HHHHHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 77666554333 1 1234555566666666665655554433
No 8
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=100.00 E-value=3.9e-53 Score=448.10 Aligned_cols=422 Identities=20% Similarity=0.300 Sum_probs=350.9
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
++++||+++.++.++++++.++| |.+...+..+.. +||. .++++++++++.++.+++++|+++++|++||.|.|+++
T Consensus 2 ~~~l~r~l~~~~~~~l~~~~~ig-g~~~~~~~~~~~-~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~~Gg~y~~~~~ 79 (442)
T TIGR00908 2 HRQLKKTLATWQLWGIGVGYVIS-GDYAGWNFGLAQ-GGWGGFVVATLLVATMYLTFCFSLAELSTMIPTAGGGYGFARR 79 (442)
T ss_pred CchhhccCCHHHHHHhHHHHHhh-ccchhHhhHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 56799999999999999999998 777777766666 8885 78899999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||..||.+||.+++.+....+.++..+++|++.+++..+ .+..+++++++.+.+|++|+|..+
T Consensus 80 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~~---------------~~~~~~~~~~~~~~ln~~g~~~~~ 144 (442)
T TIGR00908 80 AFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVGP---------------GWLAALVFYIVFIGINILGVGEAA 144 (442)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc---------------hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988764321 235667778888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCC--------CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCch
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHADASNL--------KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDI 299 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~--------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~ 299 (590)
+++.++.+++++.++++++....+.+..++ .++.+.++.+++.++..++|+|.|+|.+++++||+|||+||+
T Consensus 145 ~i~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~i 224 (442)
T TIGR00908 145 KLEFVVTAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDI 224 (442)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccc
Confidence 999999998887766555443332222111 234455666788888899999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHh-Ch-hHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 040051 300 PIGLLGSMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRV-GM-KWAKYLVALGALKGMTTVLLVGALGNARYTT 376 (590)
Q Consensus 300 p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 376 (590)
|||++.++.++.++|+..........+.+++. .++|+.++++.. |+ .+...++.+..+++.+++.++.+++.||+++
T Consensus 225 prai~~s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~ 304 (442)
T TIGR00908 225 PRGLIGAILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIF 304 (442)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998877776667766664 456888888755 32 4566677778888889999999999999999
Q ss_pred HHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch
Q 040051 377 HIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNL 456 (590)
Q Consensus 377 ~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 456 (590)
+|||||.+|++|+|+| |+|+|++|+++++++++++.+.++.+.+.++.+.+.++.|.+.+++++++|+++|
T Consensus 305 a~ardg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~~~~~~l~~~~~~~~~~~y~~~~~a~i~lr~~~p-------- 375 (442)
T TIGR00908 305 ALSRAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLTGQTALIILVSVFGAIISYVLSMAAHFTLRIRRP-------- 375 (442)
T ss_pred HHHhcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------
Confidence 9999999999999999 9999999999999999888877778888899999999999999999999888744
Q ss_pred hHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 040051 457 LMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGS 536 (590)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 536 (590)
+.+++||.|..|+.|+++++.+++++..
T Consensus 376 ----------------------------------------------------~~~rp~~~p~~~~~~~l~~~~~~~~l~~ 403 (442)
T TIGR00908 376 ----------------------------------------------------DMERPYRTPGGILTPGVALVLACVALVT 403 (442)
T ss_pred ----------------------------------------------------CCCCCccCCCcchHHHHHHHHHHHHHHH
Confidence 3346778888888999999988776554
Q ss_pred C---ChhhHHHHHHHHHHHHHHHHHHhhccccccc
Q 040051 537 L---GYQAFVRFGICTLVMLVYYFFFGLHATYDMA 568 (590)
Q Consensus 537 ~---~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~ 568 (590)
+ ++..+.....+.++..++|+.++|+|.++++
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 438 (442)
T TIGR00908 404 GFYVDPRVVVGAVAIFVVLIGYYFLYSRHHLVSGT 438 (442)
T ss_pred HHHcChHHHHHHHHHHHHHHHHHHhhhhchhhccC
Confidence 3 4434444567777788888888777666644
No 9
>PRK10836 lysine transporter; Provisional
Probab=100.00 E-value=8.2e-53 Score=449.72 Aligned_cols=400 Identities=21% Similarity=0.240 Sum_probs=330.2
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLR 146 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~ 146 (590)
+++++||+++.++++++++|.++|+|+|..++..+.. +||. .+++|++++++.++.+++++||++++|++||.|.|++
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~-aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~sGg~y~y~~ 87 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQ-AGPGGALLSYMLIGLMVYFLMTSLGELAAYMPVSGSFATYGQ 87 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH
Confidence 4467899999999999999999999999999999887 8996 8999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhh
Q 040051 147 IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKT 226 (590)
Q Consensus 147 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 226 (590)
+.+||.+||.+||.+++.+....+........++..+++. . + .+....+++++++.+|++|+|..
T Consensus 88 ~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~-~---------~-----~~~~~~~~~~~~~~lN~~gv~~~ 152 (489)
T PRK10836 88 NYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPD-T---------P-----GWIWSALFLGVIFLLNYISVRGF 152 (489)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC-C---------c-----hHHHHHHHHHHHHHHHHHcchhh
Confidence 9999999999999999988777665554444444433321 1 1 12445666777889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcc------cc----CCCCC---CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 227 SVLNWIASAINTVVILFVIIVGFAH------AD----ASNLK---PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 227 ~~~~~~~~~~~i~~~~~~~i~~~~~------~~----~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
+++|.++++.|++.++.+++.++.. .+ ++++. +..++++.+++.+....+|+|.|+|.+++++||+|
T Consensus 153 ~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~k 232 (489)
T PRK10836 153 GEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESE 232 (489)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhc
Confidence 9999999999998877666544321 11 11221 11234556666666667899999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC---------CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHH
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID---------PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVL 364 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 364 (590)
||+||+|||++.++.++.++|++..+.+...+|.++.+ .++|+..+++..+.++...++.+.++.+.+++.
T Consensus 233 nP~r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~ 312 (489)
T PRK10836 233 DPAKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAG 312 (489)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999988888876532 136888889888888888999999999999999
Q ss_pred HHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHH
Q 040051 365 LVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFS------GLDILSALLSLSTLFVFMMMAV 438 (590)
Q Consensus 365 ~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~ 438 (590)
++.+++.||++|+|||||.+|++|+|+| |+++|++|++++.+++++..+.. .++.+.++.+...++.|++.++
T Consensus 313 n~~~~~~sR~l~a~Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~ 391 (489)
T PRK10836 313 NSGMYASTRMLYTLACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAI 391 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 67999999999999887666542 3567888999999999999999
Q ss_pred HHHHHhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCcccccc
Q 040051 439 ALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPL 518 (590)
Q Consensus 439 ~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (590)
+.+++|++.+++.+ +.++++||.|.
T Consensus 392 a~l~~R~~~~~~~~-------------------------------------------------------~~~~~p~~~p~ 416 (489)
T PRK10836 392 SHYRFRRGYVLQGH-------------------------------------------------------DLNDLPYRSGF 416 (489)
T ss_pred HHHHHHHHHHhcCC-------------------------------------------------------CcCCCCCcCCC
Confidence 99998886432211 11236899999
Q ss_pred ccHHHHHHHHHHHHHHhcCCh
Q 040051 519 VPWLPSLSIATNIFLMGSLGY 539 (590)
Q Consensus 519 ~p~~~~~~~~~~~~~~~~~~~ 539 (590)
+|+.|+++++.+++++....+
T Consensus 417 ~p~~~~~~~~~~~~~~~~~~~ 437 (489)
T PRK10836 417 FPLGPIFAFVLCLIITLGQNY 437 (489)
T ss_pred ccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888765443
No 10
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=100.00 E-value=3.9e-53 Score=448.22 Aligned_cols=422 Identities=21% Similarity=0.304 Sum_probs=347.3
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
++++||++++++.++++++.++|+|+|..++.+....+++. .+++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y~~~ 82 (445)
T PRK11357 3 SQELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVYLKN 82 (445)
T ss_pred cccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceeeHHH
Confidence 46799999999999999999999999999998776635554 88999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhh
Q 040051 148 ELGDFAAFITAGN-ILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKT 226 (590)
Q Consensus 148 ~~g~~~g~~~g~~-~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 226 (590)
.+||.+||.+||. ++.......+..+..+++|+....+... .....++++++.+++.+|++|+|..
T Consensus 83 ~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~-------------~~~~~~~~~~~~~~~~ln~~gv~~~ 149 (445)
T PRK11357 83 AGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPIDP-------------LLGKFIAAGLIIAFMLLHLRSVEGG 149 (445)
T ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-------------HHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 9999999999997 4455566777788888888876543211 0123566677777889999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-----CCCC-hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchh
Q 040051 227 SVLNWIASAINTVVILFVIIVGFAHADASNLKPF-----LPFG-SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIP 300 (590)
Q Consensus 227 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-----~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 300 (590)
+++|.+++++|++.++++++.++...+.+++.+. ...+ +.+++.++..++|+|.|+|.+++++||+|||+||+|
T Consensus 150 ~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP 229 (445)
T PRK11357 150 AAFQTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMP 229 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccch
Confidence 9999999999999887777766543333332211 1112 456778888999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051 301 IGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRV--GMKWAKYLVALGALKGMTTVLLVGALGNARYTTH 377 (590)
Q Consensus 301 ~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 377 (590)
||+..++.+++++|++..++.....|.+++.. +.|+.++++.. .+++...++.+..+++.+++.++.+.+.+|++|+
T Consensus 230 ~Ai~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a 309 (445)
T PRK11357 230 RALIGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYA 309 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999888888887654 56888877753 3455666777788888999999999999999999
Q ss_pred HHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchh
Q 040051 378 IARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLL 457 (590)
Q Consensus 378 ~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 457 (590)
|+|||.+|++|+|+|||+++|++|+++++++++++.+..+++.+.++.+....+.|.+..++++++|+++
T Consensus 310 ~ardg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~~---------- 379 (445)
T PRK11357 310 MAKDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFIFVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKRD---------- 379 (445)
T ss_pred HHhcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHheeecCC----------
Confidence 9999999999999999999999999999999988888889999999988888899999888888776542
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhc-
Q 040051 458 MLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGS- 536 (590)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~- 536 (590)
+.+++||.|..|+.|+++++.++++...
T Consensus 380 ---------------------------------------------------~~~~~~k~p~~~~~~~~~~~~~~~~~~~~ 408 (445)
T PRK11357 380 ---------------------------------------------------DYKPLWRTPAFGLMTTLAIASSLILVAST 408 (445)
T ss_pred ---------------------------------------------------CCCCCcccCCchHHHHHHHHHHHHHHHHH
Confidence 1235688889999999999888877532
Q ss_pred ---CChhhHHHHHHHHHHHHHHHHHHhhccc
Q 040051 537 ---LGYQAFVRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 537 ---~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
....++.....++++|+.+|+.++||++
T Consensus 409 ~~~~~~~~~~~~~~~~~~g~~~y~~~~~~~~ 439 (445)
T PRK11357 409 FVWAPIPGLICAVIVIATGLPAYAFWAKRSR 439 (445)
T ss_pred HHcCcHHHHHHHHHHHHHhhhHHhheechhh
Confidence 2333455667888899999887776643
No 11
>PRK10238 aromatic amino acid transporter; Provisional
Probab=100.00 E-value=1.5e-52 Score=443.39 Aligned_cols=364 Identities=24% Similarity=0.352 Sum_probs=318.3
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
++++||+++.+|+.++++++++|+|+|..++..+.. +||..+++|++++++.++++++++|+++++|.+||.|+|+++.
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~aGg~y~~~~~~ 85 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQS-AGPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKY 85 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 446899999999999999999999999999999987 8999899999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
+||..||.+||.+++++....+.....++++++.+++. .+ .+...++++++.+.+|++|+|..++
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~--------------~~~~~~i~~~~~~~lN~~gv~~~~~ 150 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IP--------------TWVSAAVFFVVINAINLTNVKVFGE 150 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-Cc--------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999998888998776532 11 2356667778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc---cc--c----CCCC---CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCC
Q 040051 229 LNWIASAINTVVILFVIIVGFA---HA--D----ASNL---KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPS 296 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~---~~--~----~~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 296 (590)
+|.+++.+|++.++++++.++. .. + ..++ .++.|+++.++..++..++|+|.|+|.+++++||+|||+
T Consensus 151 ~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~ 230 (456)
T PRK10238 151 MEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPE 230 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChh
Confidence 9999999999887666553322 11 1 1111 124466677777888889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 297 RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 297 r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
|++|||+..++..+.+.|++.........|.+++.. ++|+.++++..+.++...++++.++.+.+++.++.+++.||++
T Consensus 231 r~iPrAi~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l 310 (456)
T PRK10238 231 QSIPKATNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRML 310 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998888777888887753 5799999998998888899999999999999999999999999
Q ss_pred HHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 040051 376 THIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVRE 449 (590)
Q Consensus 376 ~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 449 (590)
|+|||||.+|++|+|+| |+++|++|++++.+++.+..++ ..++.+.++++.+.++.|.+.+++.+++|+++++
T Consensus 311 ~a~ardg~lP~~f~kv~-~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~~~~~~~i~y~~~~~~~l~~r~~~~~ 389 (456)
T PRK10238 311 FGLAQQGNAPKALASVD-KRGVPVNTILVSALVTALCVLINYLAPESAFGLLMALVVSALVINWAMISLAHMKFRRAKQE 389 (456)
T ss_pred HHHHhCCCccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 6799999999999988766554 3588899999999999999999999998887654
No 12
>TIGR00909 2A0306 amino acid transporter.
Probab=100.00 E-value=1.4e-52 Score=442.93 Aligned_cols=425 Identities=32% Similarity=0.549 Sum_probs=372.0
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
++|++|.++.+++.++.++|+|++..++..... +|+..+++|+++++..++.+++++|+++++|++||.|+|+++.+||
T Consensus 1 l~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~-~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~ 79 (429)
T TIGR00909 1 LSRELGLFDLTMLGIGAMIGTGIFVVTGIAAGK-AGPAVILSFVLAGLTALFIALVYAELAAMLPVAGSPYTYAYEAMGE 79 (429)
T ss_pred CCccccHHHHHHHHHhhhhcchHHHhHHHHHHH-cCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcceeeHHHHhCc
Confidence 579999999999999999999999999998776 8888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNR---EPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
..|+.+||.+++.+....+..+..+++++..+++. +.+.+.. ..+..+......+++++++.+.+|++|+|..++
T Consensus 80 ~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~ 157 (429)
T TIGR00909 80 LTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLT--AKPGNGGVFNLPALLIVLFLTYILYLGAKESGK 157 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhh--cCCcccccccHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99999999999999999999999999999887752 1111100 000011112245677888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHH
Q 040051 229 LNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMS 308 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~ 308 (590)
++.+++.++++.++++++.++.+.+.+++.++.+.++.++..++...+|+|.|+|.+.+++||+|||+|++||+++.+..
T Consensus 158 ~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~ 237 (429)
T TIGR00909 158 VNDILVVLKVAALLLFAALGAIHFASNNYTPFMPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLI 237 (429)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCCCCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHH
Confidence 99999999999888777777766666677666677777888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchh
Q 040051 309 MITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPW 387 (590)
Q Consensus 309 ~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~ 387 (590)
++.++|++..+......|.+++.+ +.|+..+.+..++++...++.+..+++.+++.++.+.+.||+++++||||.+|++
T Consensus 238 ~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~ 317 (429)
T TIGR00909 238 VVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSRDGLLPGS 317 (429)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence 999999999999888888877643 4688888888888999999999999999999999999999999999999999999
Q ss_pred hhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchhHHHHHHHHHH
Q 040051 388 FALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIII 467 (590)
Q Consensus 388 f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~ 467 (590)
|+|+|||+++|++|++++++++.++....+++.+.++.+...++.|.+.+++.+++|+|+|+
T Consensus 318 ~~~~~~~~~~P~~a~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~a~~~lr~~~~~------------------ 379 (429)
T TIGR00909 318 LSKVHPKTGTPHMSIIIFSLTAALLASLVPLEGLAELTSIGTLIAFAAVNVAVIILRRRRPD------------------ 379 (429)
T ss_pred HHHcCCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC------------------
Confidence 99999999999999999999998877778899999999999999999999999999887543
Q ss_pred HHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHH
Q 040051 468 ASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGI 547 (590)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 547 (590)
.+++||.|..|+.+.+.+..+.++....++.++....+
T Consensus 380 ------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (429)
T TIGR00909 380 ------------------------------------------IQRAFRCPLVPVLPVLVVSYCIYLLLNLGPGTTVWFLV 417 (429)
T ss_pred ------------------------------------------CCCCCCCCcchHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 34567778888888888888888888888989999999
Q ss_pred HHHHHHHHHHHH
Q 040051 548 CTLVMLVYYFFF 559 (590)
Q Consensus 548 ~~~i~~~~y~~~ 559 (590)
|+++|+++|.+|
T Consensus 418 ~~~~g~~~y~~~ 429 (429)
T TIGR00909 418 WMLLGSVFYFIY 429 (429)
T ss_pred HHHHHHHHHHcC
Confidence 999999998654
No 13
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-54 Score=455.16 Aligned_cols=481 Identities=30% Similarity=0.509 Sum_probs=374.2
Q ss_pred ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cccchhhhHHH
Q 040051 70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPV-AGGSFAYLRIE 148 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~-~Gg~y~~~~~~ 148 (590)
+++||+|+.+|+.++++|.++|+|+|+..|.++.+.|||+.+++++++++..++.++|++|++.++|. +|+.|.|++|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~ 105 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRF 105 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeee
Confidence 68999999999999999999999999999999998555669999999999999999999999999999 59999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc-cccccccCchhHHHHHHHHHHHHHHhhchhh--
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIH-TNLREGYNLLDPIAVAVLATAATIASISTRK-- 225 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~-- 225 (590)
+||.+||.+||.|++.|++..++++.+++.+++.+.+ ...+... .+.+.. .+...++++...+|+.|+|.
T Consensus 106 i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~~~~~~-----~~~~~fla~~v~in~~gv~~~g 178 (554)
T KOG1286|consen 106 VGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVDTVNPG-----GWIPDFLAFILIINLFGVLAYG 178 (554)
T ss_pred eCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--cccccccccCCCCC-----ccHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999871 1111111 122222 22233344444455555555
Q ss_pred ----hhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC---------CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhc
Q 040051 226 ----TSVLNWIASAINTVVILFVIIVGFAHADASNLK---------PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEET 292 (590)
Q Consensus 226 ----~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 292 (590)
...++.+++.+.++.+.++++.|....|..|+. +|.|.++.|++.++..++|+|.|+|.++..+||+
T Consensus 179 e~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~ 258 (554)
T KOG1286|consen 179 EVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEA 258 (554)
T ss_pred ceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhc
Confidence 555555555555555555555555556544444 3778889999999999999999999999999999
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCC--CCCCc----HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 040051 293 KNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTD--IDPNA----AYSVAFQRVGMKWAKYLVALGALKGMTTVLLV 366 (590)
Q Consensus 293 k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 366 (590)
|||+|++|+|+..++.++.++|++..+.+...+|+++ +++++ |+..+.+..+.+.++.++++++++++.++.++
T Consensus 259 kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~ 338 (554)
T KOG1286|consen 259 KNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNS 338 (554)
T ss_pred cCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 66665 44444444455555569999999999999999
Q ss_pred hhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHHHHHHHHHHHHH
Q 040051 367 GALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSG------LDILSALLSLSTLFVFMMMAVAL 440 (590)
Q Consensus 367 ~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~~~~~~~~ 440 (590)
.+++.||.+++||+||++||+|+++|+| |+|++|++++.+++++..+..+ ++++.++.+++.++.|.+++++.
T Consensus 339 ~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~tl~~w~~i~~~~ 417 (554)
T KOG1286|consen 339 SLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSIGTLFAWTLVALSH 417 (554)
T ss_pred HhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999966 9999999999999988877754 59999999999999999999999
Q ss_pred HHHhhhccCCC--Cccch-----hHHHHHHHHHHHHHhHHhhhcCCCC--------CcchHHHHHHHHHHHHHHHHHhhc
Q 040051 441 LVRRYYVREIT--PRKNL-----LMLVIFLLIIIASSAGISAYWGLKP--------NGWVGYVITVPLWFLGTLGISVLL 505 (590)
Q Consensus 441 ~~~r~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~ 505 (590)
+++|+..++.. ....+ ..+......+++.......+|.... ++....++...+++.+.+.+..+.
T Consensus 418 i~~R~a~~~q~~~~~~~~~~s~~~~~gs~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~yl~~~i~l~~~i~~~i~~ 497 (554)
T KOG1286|consen 418 LRFRYAMKVQGRSLDELPYKSPTGPYGSYYGLLVNILILLAQFYVAFFPIGSEFSAWGFFEAYLGLPILLIFYIGYKIYA 497 (554)
T ss_pred eeeeecccccCCCcccccccCCCCCchhHHHHHHHHHHHHHHHhccccccCCCCcHHHHHHHHHHHHHHHHHHHHHheee
Confidence 99998643222 11111 1244444444444444444443321 223334444444555555555444
Q ss_pred cCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHH--HHHHHHHHHHHHHHH-Hhhcccc
Q 040051 506 PQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFV--RFGICTLVMLVYYFF-FGLHATY 565 (590)
Q Consensus 506 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~y~~-~~~~~~~ 565 (590)
+.... .+|+.|.+.+..+.+++..++..++. ....|..++...|.. |+.+|.+
T Consensus 498 ~~~~~-------~vp~~~~idl~~~~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~ 553 (554)
T KOG1286|consen 498 KPTNT-------LVPLSPCIDLDTNIYLMDSLDAETWIEERFEVWLEIGLLIYFFWYGIRHSK 553 (554)
T ss_pred ccccc-------ccCCccceEEEecceeeccccchhhhhhhHHHHhhhhhHHHHHhhhhhccc
Confidence 33221 56778888888888888888888888 889999999999977 7766553
No 14
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=100.00 E-value=4e-52 Score=441.36 Aligned_cols=366 Identities=21% Similarity=0.273 Sum_probs=317.0
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
+.++||+++.+|+.+++++.++|+|+|..++..+.. +||..+++|++++++.++.+++++||++++|++||.|.|+++.
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~-~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~~Gg~~~~~~~~ 85 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIAS-AGPAALLAYLLAGLLVVFIMRMLGEMAVANPDTGSFSTYADDA 85 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 456899999999999999999999999999999887 8998888999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
+||.+||.+||.+|++++...+.+....+.+++.+++.. + .+.++++++++.+.+|++|+|..++
T Consensus 86 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~--------------~~~~~~~~~~~~~~~n~~gv~~~~~ 150 (452)
T TIGR01773 86 IGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI-P--------------LWLFSLILTIVLTLTNLYSVKSYGE 150 (452)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-c--------------HHHHHHHHHHHHHHHHHHhcchhhH
Confidence 999999999999999999999999988888888765321 1 3467778888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---c----cC---CCC---CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCC
Q 040051 229 LNWIASAINTVVILFVIIVGFAH---A----DA---SNL---KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNP 295 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~~---~----~~---~~~---~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 295 (590)
+|.+++++|++.++.+++.++.. . +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||+|||
T Consensus 151 ~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P 230 (452)
T TIGR01773 151 FEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNP 230 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcCh
Confidence 99999999998887766654321 1 11 111 12345667788999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC--CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID--PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNAR 373 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 373 (590)
+||+|||+..+...++++|++.........|.++.. +++|+.++.+..++++...++.+.++++.+++.++.+++.||
T Consensus 231 ~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR 310 (452)
T TIGR01773 231 IKSITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSR 310 (452)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999888888778866543 234888888888888888999999999999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 374 YTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYYV 447 (590)
Q Consensus 374 ~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 447 (590)
++++|||||.+|++|+|+| |+++|++|++++.+++++..++ ..++.+.++.+...++.|.+.+++.+++|++.
T Consensus 311 ~~~a~ardg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~i~~r~~~ 389 (452)
T TIGR01773 311 MLYSLAERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAIALLVYLVIAVSQLRMRKKL 389 (452)
T ss_pred HHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 7899999999999888766554 23567888888888999999999999988876
Q ss_pred cCCC
Q 040051 448 REIT 451 (590)
Q Consensus 448 ~~~~ 451 (590)
|+.+
T Consensus 390 ~~~~ 393 (452)
T TIGR01773 390 KANG 393 (452)
T ss_pred HhcC
Confidence 6543
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=100.00 E-value=2e-52 Score=442.25 Aligned_cols=419 Identities=17% Similarity=0.250 Sum_probs=343.7
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
+||++|.++++++++++++|+|+|..++... . +|+..+++|++++++.++.+++++|+++++|++||.|.|+++.+||
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~-~-~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~~GG~y~y~~~~~G~ 81 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLA-Q-VGTISILSWLVTAVGSMALAYAFAKCGMFSRKSGGMGGYAEYAFGK 81 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHH-H-hhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCCchHHHHHHHcCc
Confidence 4789999999999999999999999988754 4 7888889999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
..||++||.+|+.++......+..+..|+..+++...+.+ ....+.++++++.+.+|++|+|..+++|.
T Consensus 82 ~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~~~~~-----------~~~~~~~~~l~~~~~ln~~g~~~~~~i~~ 150 (438)
T PRK10655 82 SGNFMANYTYGVSLLIANVAIAISAVGYGTELFGATLSPV-----------QICLATIGVLWLCTVANFGGARITGQISS 150 (438)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchH-----------HHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 9999999999999988777777777788887765322111 13355667778899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCC-CCCCCC---hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHH
Q 040051 232 IASAINTVVILFVIIVGFAHADASNLK-PFLPFG---SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSM 307 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~ 307 (590)
+.+..+++.++++++.++...+.+++. ++.+.+ +.++..++..++|+|.|+|.+++++||+|||+||+|||++.+.
T Consensus 151 i~~~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~ 230 (438)
T PRK10655 151 VTVWGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGT 230 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHH
Confidence 999999888877777666554444443 233333 2567777888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCch
Q 040051 308 SMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPP 386 (590)
Q Consensus 308 ~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~ 386 (590)
.+++++|++...+.....|.+++. +++|+.++++...+++...++.+..+++.+++.++...+.+|++++++|||.+|+
T Consensus 231 ~~~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~a~dg~lP~ 310 (438)
T PRK10655 231 LGAAVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPK 310 (438)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhH
Confidence 999999999998888888877764 3568888888777788788888888999999999999999999999999999999
Q ss_pred hhhccCCCCCCchHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchhHH
Q 040051 387 WFALVHPKTGTPINANLLIVLASALIALF-------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLML 459 (590)
Q Consensus 387 ~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~ 459 (590)
+|+|+| |+++|++|++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+|+.+|++|..
T Consensus 311 ~~~~v~-~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~~~~~lr~~~~~~~~~~~~~-- 387 (438)
T PRK10655 311 IFSRVT-KVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKVANVPPSKAKVA-- 387 (438)
T ss_pred HHHhhC-cCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcchhHHH--
Confidence 999999 6799999999999887665543 357889999999999999999999999888876544433311
Q ss_pred HHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCCh
Q 040051 460 VIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGY 539 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 539 (590)
++++.++.+.+++++.....
T Consensus 388 ------------------------------------------------------------~~~~~~~~~~~~~~~~~~~~ 407 (438)
T PRK10655 388 ------------------------------------------------------------NFIAFVGALYSFYALYSSGE 407 (438)
T ss_pred ------------------------------------------------------------HHHHHHHHHHHHHHHHHhhH
Confidence 23444445444444444444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhccccc
Q 040051 540 QAFVRFGICTLVMLVYYFFFGLHATYD 566 (590)
Q Consensus 540 ~~~~~~~~~~~i~~~~y~~~~~~~~~~ 566 (590)
.+......++++|.++|.++.||+..|
T Consensus 408 ~~~~~~~~~~~~g~~~y~~~~~~~~~~ 434 (438)
T PRK10655 408 EAMLYGSIVTFLGWTLYGLISPRFELK 434 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 455666788899999997766664443
No 16
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=100.00 E-value=4e-52 Score=440.22 Aligned_cols=416 Identities=19% Similarity=0.264 Sum_probs=340.4
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
.++++|++|.++++++.++.++|+|+|..++.... .|+..+++|+++++..++.+++++||++++|++||.|+|+++.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~--~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~aGG~y~~~~~~ 80 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLAS--TGGIAIYGWLVTIIGALGLSMVYAKMSSLDPSPGGSYAYARRC 80 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHHH
Confidence 34578999999999999999999999999988654 3556789999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
+||.+||.+||.+|+.+.............|...+++.....+ ......++++++++.+|++|+|..++
T Consensus 81 ~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~ln~~gvk~~~~ 149 (445)
T PRK10644 81 FGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPL-----------VLTITCVVVLWIFVLLNIVGPKMITR 149 (445)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcH-----------HHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 9999999999999999887777666666677766654321111 12356677778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccccCCCCCC-CCC---CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHH
Q 040051 229 LNWIASAINTVVILFVIIVGFAHADASNLKP-FLP---FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLL 304 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~---~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~ 304 (590)
+|++++.++++.++++++.++...+.+++.+ +.+ +++.++..++..++|+|.|+|.+++++||+|||+|++|||++
T Consensus 150 i~~i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~ 229 (445)
T PRK10644 150 VQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATI 229 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHH
Confidence 9999999999888877777665444333322 111 234566677888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCC
Q 040051 305 GSMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHM 383 (590)
Q Consensus 305 ~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~ 383 (590)
.++.+++++|++..++....+|.+++. .+.|+.++++...+++...++.+..+++.+++.++.+...+|++++|||||.
T Consensus 230 ~s~~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~ardg~ 309 (445)
T PRK10644 230 GGVLIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGL 309 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999888887764 4578888888777777778888888899999999999999999999999999
Q ss_pred CchhhhccCCCCCCchHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccch
Q 040051 384 IPPWFALVHPKTGTPINANLLIVLASALIALF-------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNL 456 (590)
Q Consensus 384 lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~ 456 (590)
+|++|+|+| |+++|++|++++++++.++.+. ..++.+.++.+.+.++.|++.+++.+++|+|+++.++
T Consensus 310 lP~~~~~v~-~~~tP~~Ai~~~~~i~~l~~l~~~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~~~~---- 384 (445)
T PRK10644 310 FPPIFARVN-KAGTPVAGLLIVGVLMTIFQLSSISPNASKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKAR---- 384 (445)
T ss_pred ccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccc----
Confidence 999999999 5799999999999998776654 2488899999999999999999999988877542111
Q ss_pred hHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhc
Q 040051 457 LMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGS 536 (590)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 536 (590)
|..|+.|+++++.+++++..
T Consensus 385 ------------------------------------------------------------p~~~~~~~~~~~~~~~~~~~ 404 (445)
T PRK10644 385 ------------------------------------------------------------PAYLAVTLIAFVYCIWAVVG 404 (445)
T ss_pred ------------------------------------------------------------cchhHHHHHHHHHHHHHHHH
Confidence 23456777777777777766
Q ss_pred CChhhHHHHHHHHHHHHHHHHH-Hhhc
Q 040051 537 LGYQAFVRFGICTLVMLVYYFF-FGLH 562 (590)
Q Consensus 537 ~~~~~~~~~~~~~~i~~~~y~~-~~~~ 562 (590)
.+.........+++++...|++ ++||
T Consensus 405 ~~~~~~~~~~~~~~~~~~~y~~~~~~~ 431 (445)
T PRK10644 405 SGAKEVMWSFVTLMVITAFYALNYNRL 431 (445)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6665666666667777776654 4443
No 17
>PRK10580 proY putative proline-specific permease; Provisional
Probab=100.00 E-value=6.5e-52 Score=439.74 Aligned_cols=419 Identities=20% Similarity=0.338 Sum_probs=342.6
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRI 147 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~ 147 (590)
+++++||+++.+++++++++.++|+|+|..++..+.. +||.++++|++++++.++.+++++|+++++|++||.|.|+++
T Consensus 3 ~~~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~-aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~~Gg~y~y~~~ 81 (457)
T PRK10580 3 SKNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKM-AGPSVLLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQE 81 (457)
T ss_pred CCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3467999999999999999999999999999998876 999999999999999999999999999999999999999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||.+||++||.+++.+....+.....++.++..+++.. + ...+.++++++...+|++|+|..+
T Consensus 82 ~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~l~~~ln~~gv~~~~ 146 (457)
T PRK10580 82 NLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV----------P-----HWIWVLSVVLIICAVNLMSVKVFG 146 (457)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----------C-----hHHHHHHHHHHHHHHHHccchhHH
Confidence 9999999999999999998888887788888887665321 1 124456667788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhc-------cc-cCCC----CC--CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 228 VLNWIASAINTVVILFVIIVGFA-------HA-DASN----LK--PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~-------~~-~~~~----~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
++|.+++.+|++.++++++.++. .. +..+ +. ++.++++.+++.++..++|+|.|+|.+++++||+|
T Consensus 147 ~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~k 226 (457)
T PRK10580 147 ELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAK 226 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhc
Confidence 99999999999887766554421 11 1111 11 23456677888899999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchh
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNA 372 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 372 (590)
||+||+|||++.+.+++.++|++..+......|.+++.. ++|+..+++..|.++...++.+..+.+.+++.++.+++.|
T Consensus 227 nP~k~iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~s 306 (457)
T PRK10580 227 DPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVG 306 (457)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888888888764 4688888888888888888998889999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 373 RYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYY 446 (590)
Q Consensus 373 R~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 446 (590)
|++++|||||.+|++|+|+| |+++|++|+++++++..+..++ ..++.+.++.+...++.|.+.+++.+++|++
T Consensus 307 R~~~~~ardg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 307 RMLHGMAEQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred HHHHHHHhCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 6899999999997765443322 2467899999999999999999999999887
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHH
Q 040051 447 VREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLS 526 (590)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 526 (590)
+++.. .++++|+.|..|+.++++
T Consensus 386 ~~~~~---------------------------------------------------------~~~~~f~~~~~~~~~~~~ 408 (457)
T PRK10580 386 LPPEE---------------------------------------------------------VKALKFKVPGGVATTIGG 408 (457)
T ss_pred HHhcC---------------------------------------------------------CCCCCcccCCccHHHHHH
Confidence 54322 122455556666666666
Q ss_pred HHHHHHHHhcC-----ChhhHHHHHHHHHHHHHHHHHHh
Q 040051 527 IATNIFLMGSL-----GYQAFVRFGICTLVMLVYYFFFG 560 (590)
Q Consensus 527 ~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~y~~~~ 560 (590)
++.+.+++..+ ...+......+++++.+.|..++
T Consensus 409 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~y~~~~ 447 (457)
T PRK10580 409 LIFLVFIIGLIGYHPDTRISLYVGFAWIVLLLIGWMFKR 447 (457)
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66665543322 12244666777888888887754
No 18
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=100.00 E-value=1e-51 Score=438.92 Aligned_cols=366 Identities=19% Similarity=0.315 Sum_probs=316.0
Q ss_pred cccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 69 ENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 69 ~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
++++||+++.++++++++|.+||+|+|..++..+.. +||..+++|++++++.++.+++++|+++..|..|+.|.|+++.
T Consensus 15 ~~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~-aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~~~~~~~ya~~~ 93 (469)
T PRK11049 15 EQSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISL-AGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDL 93 (469)
T ss_pred chhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhh-cCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence 356999999999999999999999999999999887 8998899999999999999999999999999999999999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
+||..||++||.+++.+....+.++...+.|+..+++.. + .+.++++++++++++|++|+|..++
T Consensus 94 ~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~-~--------------~~~~~~~~~~~~~~iN~~g~~~~~~ 158 (469)
T PRK11049 94 LGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL-S--------------DWVASLAVVLLLLSLNLATVKMFGE 158 (469)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-c--------------HHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999998877777788888887665321 1 2345666778889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc-----cC----CCC------CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 229 LNWIASAINTVVILFVIIVGFAHA-----DA----SNL------KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 229 ~~~~~~~~~i~~~~~~~i~~~~~~-----~~----~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
+|++.+.+|++.++++++.++... +. .++ .++.|+++.+++.++...+|+|.|+|.+++++||+|
T Consensus 159 i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~k 238 (469)
T PRK11049 159 MEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETK 238 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhc
Confidence 999999999998888777765421 01 111 124456777889999999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchh
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNA 372 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~s 372 (590)
||+||+||++..+.+.+.++|++...+.....|.+++.. ++|+.++++..++++...++.+.++++.+++.++.+++.|
T Consensus 239 nP~r~iPrai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~s 318 (469)
T PRK11049 239 DPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTS 318 (469)
T ss_pred CHhhHHHHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998888999999999999888888888754 4799888888888888899999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHH---HH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 373 RYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIA---LF-----SGLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 373 R~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~---~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
|++|+|||||.+|++|+|+| |+|+|++|+++++++..+.. .. ..++.+.++.+....+.|.+.+++.+++|
T Consensus 319 R~l~a~ardg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr 397 (469)
T PRK11049 319 RMLFGLAQEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYR 397 (469)
T ss_pred HHHHHHHhCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 56999999999877654311 12 24778888888899999999999999999
Q ss_pred hhccCCC
Q 040051 445 YYVREIT 451 (590)
Q Consensus 445 ~~~~~~~ 451 (590)
+++|+.+
T Consensus 398 ~~~p~~~ 404 (469)
T PRK11049 398 KQRPHLH 404 (469)
T ss_pred HhhhhcC
Confidence 8877643
No 19
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=100.00 E-value=1.1e-50 Score=427.93 Aligned_cols=400 Identities=19% Similarity=0.245 Sum_probs=332.7
Q ss_pred HHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHH
Q 040051 84 FGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILL 163 (590)
Q Consensus 84 ~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 163 (590)
+++|+++|+|+|..++..++. +||.++++|++++++.++.+++++||++++|++||.|.|++|.+||.+||.+||.+|+
T Consensus 2 ~~ig~~IGsGif~~~g~~~~~-aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~~Gg~y~y~~~~~G~~~gf~~gw~~~~ 80 (446)
T PRK10197 2 LSIAGVIGASLFVGSSVAIAE-AGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWW 80 (446)
T ss_pred eeecchhHhHHHHHhHHHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcChHHHHHHHHHHHH
Confidence 578999999999999999887 8999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHH
Q 040051 164 ESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILF 243 (590)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~ 243 (590)
.++...+.+....+.+++.+.+.. + ...++++++++++.+|++|+|..+++|.+++.+|++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~ 145 (446)
T PRK10197 81 FWVLVIPLEANIAAMILHSWVPGI----------P-----IWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILA 145 (446)
T ss_pred HHHHHHHHHHHHHHHHHHhccccC----------c-----HHHHHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHH
Confidence 999998888877777666543210 1 3467888888899999999999999999999999998887
Q ss_pred HHHhhhcccc-------CCCC------CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHH
Q 040051 244 VIIVGFAHAD-------ASNL------KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMI 310 (590)
Q Consensus 244 ~~i~~~~~~~-------~~~~------~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~ 310 (590)
+++.++.... ..++ .++.|+++.+++.++..++|+|.|+|.+++++||+|||+||+|||+..++..+
T Consensus 146 ~ii~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i 225 (446)
T PRK10197 146 FIFLGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRI 225 (446)
T ss_pred HHHHHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHH
Confidence 7766554211 0111 13446677889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCCC--CcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhh
Q 040051 311 TIIYCLMALSLCVMQPYTDIDP--NAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWF 388 (590)
Q Consensus 311 ~~~y~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f 388 (590)
.++|++..++....+|+++.+. ..++..+.+..++++...++++.++++.+++.++.+++.||++|++||||.+|++|
T Consensus 226 ~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~ardg~lP~~~ 305 (446)
T PRK10197 226 SIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAVM 305 (446)
T ss_pred HHHHHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHH
Confidence 9999999999998899876543 34677778888989999999999999999999999999999999999999999999
Q ss_pred hccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchhHHHHH
Q 040051 389 ALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIF 462 (590)
Q Consensus 389 ~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 462 (590)
+|+| |+|+|++|++++++++++..+. ..++.+.++.+...++.|.+.+++.+++|++.++
T Consensus 306 ~~~~-~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~i~lr~~~~~------------- 371 (446)
T PRK10197 306 GKIN-RSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILRA------------- 371 (446)
T ss_pred HhhC-cCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 9999 8899999999998877655443 2578899999999999999999999998886331
Q ss_pred HHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC----C
Q 040051 463 LLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSL----G 538 (590)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~----~ 538 (590)
++.+.+||.|..|+.++++++.+++.+..+ +
T Consensus 372 ---------------------------------------------~~~~~~~~~~~~p~~~~~~i~~~~~~~~~~~~~~~ 406 (446)
T PRK10197 372 ---------------------------------------------EGSEIRLRMWLYPWLTWLVIGFITFVLVVMLFRPA 406 (446)
T ss_pred ---------------------------------------------cCCCCCCcCCCcchHHHHHHHHHHHHHHHHHHCcc
Confidence 122345666777777777776665443221 2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 040051 539 YQAFVRFGICTLVMLVYYFF 558 (590)
Q Consensus 539 ~~~~~~~~~~~~i~~~~y~~ 558 (590)
..........+++++..|+.
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~ 426 (446)
T PRK10197 407 QQLEVISTGLLAIGIICTVP 426 (446)
T ss_pred hHHHHHHHHHHHHHHHhhhH
Confidence 22233456677888888873
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=100.00 E-value=5.8e-51 Score=429.38 Aligned_cols=358 Identities=20% Similarity=0.253 Sum_probs=305.5
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
.+|+++.++++++.+++++|+|+|..++... . +|+.++++|+++++..++.+++++||++++|++||.|+|++| +||
T Consensus 3 ~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a-~-~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~~GG~y~y~~~-~g~ 79 (435)
T PRK10435 3 SAKKIGLFACTGVVAGNMMGSGIALLPANLA-S-IGSIAIWGWIISIIGAMSLAYVYARLATKNPQQGGPIAYAGE-ISP 79 (435)
T ss_pred CCCcCCHHHHHHHHHhhHHHHHHHHHHHHHH-H-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCChhHHHHH-HCc
Confidence 4789999999999999999999999999864 4 788899999999999999999999999999999999999999 899
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
.+||.+||.+|.............+..|+..+++...+.+ ...+++++++++.+++|++|+|..++++.
T Consensus 80 ~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~-----------~~~~~~~~i~~~~~~ln~~gvk~~~~i~~ 148 (435)
T PRK10435 80 AFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPI-----------PAGIACIAIVWVFTFVNMLGGTWVSRLTT 148 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChH-----------HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999987766666777777788877664221111 02245666777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCC----CCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHH
Q 040051 232 IASAINTVVILFVIIVGFAHADAS----NLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSM 307 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~ 307 (590)
+..+++++.++.+++.++.+.+++ ++.+..+.++.+++.++..++|+|.|+|.+++++||+|||+||+|||++.+.
T Consensus 149 i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~~~ 228 (435)
T PRK10435 149 IGLVLVLIPVVGTAIVGWHWFDAATYAANWNTSDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATMLGT 228 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHhhcccccCCCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHHHH
Confidence 999888877766666555443332 2222223456788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCch
Q 040051 308 SMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPP 386 (590)
Q Consensus 308 ~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~ 386 (590)
.+++++|++..++....+|.+++. .++|+.++++..++++...++.+..+++++++.++.++..+|..+++||||.+||
T Consensus 229 ~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~ardG~lP~ 308 (435)
T PRK10435 229 GLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRAANDGNFPK 308 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence 999999999999999999988884 5679999998888889999999989999999999999999999999999999999
Q ss_pred hhhccCCCCCCchHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 387 WFALVHPKTGTPINANLLIVLASALIALF------------SGLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 387 ~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
+|+|+| |+|+|++|+++++++..++... ..++.+.++.+...++.|++++++.+++|
T Consensus 309 ~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~y~~~~~~~ir~~ 377 (435)
T PRK10435 309 VYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFE 377 (435)
T ss_pred HHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999 7899999999987776543321 24788999999999999999999988543
No 21
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=100.00 E-value=7.1e-51 Score=436.81 Aligned_cols=377 Identities=22% Similarity=0.318 Sum_probs=310.8
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccCh-H-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGP-A-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYL 145 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~ 145 (590)
+++++||+++.+++++++++.++|+|+|..++..+.. +|+ + .+++|++++++.++.+++++|+++++|++||.|+|+
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~-~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~sGG~y~~~ 114 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKN-AGSVGLALIMWAVCGIFSIVGALVYAELGTTIPKSGGEYNYI 114 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhh-CCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhH
Confidence 4567999999999999999999999999999998876 676 4 568899999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-hhcC-CCCccccccccccccCchhHHHHHHHHHHHHHHhhc
Q 040051 146 RIELGDFAAFITAGNILLE-SIVGGAAVARAWTSYFTT-LLNR-EPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIS 222 (590)
Q Consensus 146 ~~~~g~~~g~~~g~~~~l~-~~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 222 (590)
++.+||.+||+++|..++. +....+..+..+++|+.. .++. ..+.| ....++++++++.+++|++|
T Consensus 115 ~~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~-----------~~~~i~~~~i~~~~~ln~~G 183 (501)
T TIGR00911 115 LEVFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEW-----------AIRLVAVLCVLLLTLVNCLS 183 (501)
T ss_pred HhHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchH-----------HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999987763 345566677777777643 2321 11111 13467778888999999999
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---CCC--CCC-CC--CCChhhHHHHHHHHHHhhcchhhhhhhhhhccC
Q 040051 223 TRKTSVLNWIASAINTVVILFVIIVGFAHAD---ASN--LKP-FL--PFGSEGIFKAAAVVYFAYGGFDNIATMAEETKN 294 (590)
Q Consensus 223 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---~~~--~~~-~~--~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 294 (590)
+|..++++.+++.++++.++++++.++.... ..+ ... +. +++..++..++..++|+|.|+|.+++++||+||
T Consensus 184 vk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~kn 263 (501)
T TIGR00911 184 VKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKN 263 (501)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcC
Confidence 9999999999999999988877776654321 111 111 11 134567788899999999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHhhhchhH
Q 040051 295 PSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAF-QRVGMKWAKYLVALGALKGMTTVLLVGALGNAR 373 (590)
Q Consensus 295 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR 373 (590)
|+|++|||+..+..+++++|++..+++....|.+++..+.+....+ +...+ ....++.+...++.+++.++.+++.||
T Consensus 264 P~r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g-~~~~~i~~~~~is~~~~~~~~~~~~sR 342 (501)
T TIGR00911 264 PYRTLPIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLG-VMSWAMPALVGLSCFGSVNGSLFSSSR 342 (501)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988888887776544333322 22222 556777888888999999999999999
Q ss_pred HHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc
Q 040051 374 YTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPR 453 (590)
Q Consensus 374 ~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 453 (590)
+++++||||.+|++|+|+|+|+++|+++++++++++++....+++..+.++.+....+.|.+.+++++++|+|+|+.+|+
T Consensus 343 ~l~a~ardg~lP~~~~~v~~~~~~P~~all~~~~i~~l~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~rp 422 (501)
T TIGR00911 343 LFFVGGREGHLPSLLSMIHVKRLTPLPSLLIVCTLTLLMLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNRP 422 (501)
T ss_pred HHHHHHhcCCccHHHHHhcCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCCC
Confidence 99999999999999999999999999999999998887776777878888888888999999999999999998887776
Q ss_pred cchh
Q 040051 454 KNLL 457 (590)
Q Consensus 454 ~~~~ 457 (590)
+|.+
T Consensus 423 ~r~p 426 (501)
T TIGR00911 423 IKVP 426 (501)
T ss_pred ccCc
Confidence 6643
No 22
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=414.76 Aligned_cols=459 Identities=18% Similarity=0.253 Sum_probs=371.3
Q ss_pred cCCCCchhhHHhhhcccccccccCCHHHHHHHHhhhh-hcchhhhcchHhHhhccCh-HHHHHHHHHHHHHHHHHHHHHH
Q 040051 53 SRSHDGNEICELRKQSENDMKRCLTWWDLTWFGFGAV-IGAGIFVLTGQEAHKHAGP-AIVLSYVASGVSAMLSVFCYTE 130 (590)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ae 130 (590)
.+++|++++.+++ +++++||++++++.+.++++.+ .-.|+-......+.. +|| ...++|++++++.++++++++|
T Consensus 29 ~~~~d~~~L~~lg--Ykqef~R~fs~~s~fg~sFs~~g~~~~i~tsm~~gl~~-gG~~~~vwgwlIa~~~~i~va~slaE 105 (550)
T KOG1289|consen 29 EDDSDEELLAELG--YKQELKREFSLFSIFGISFSLMGLLPGIATSMAYGLGS-GGPPTLVWGWLIAGFFSICVALSLAE 105 (550)
T ss_pred cccCCHHHHHHcC--CchhhhhhhhHHHHHHHHHHHhcchhhhhhheeecccc-CChHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344555666666 9999999999999999999866 113444444444444 565 5999999999999999999999
Q ss_pred hhhcccccccchhhhHH----HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhH
Q 040051 131 FAIEIPVAGGSFAYLRI----ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDP 206 (590)
Q Consensus 131 l~~~~P~~Gg~y~~~~~----~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (590)
+++.+|++||.|.|+.. .+||..+|++||...+++....++...+.++.+.......+++|. ....+...
T Consensus 106 l~Sa~PtsGgLy~waa~lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~------~~~~~~~~ 179 (550)
T KOG1289|consen 106 LCSAMPTSGGLYFWAAVLAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYE------PTNYHQFG 179 (550)
T ss_pred HHhhCCCCCcHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCc------ccceEeeh
Confidence 99999999999999985 677888999999999999999999999999999988776655543 22233568
Q ss_pred HHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc--------------CCCCCCCCCCChhhHHHHH
Q 040051 207 IAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHAD--------------ASNLKPFLPFGSEGIFKAA 272 (590)
Q Consensus 207 ~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~~~~~~~~ 272 (590)
+..++.++..++|+.+.|...+++.+.....++.+++.+|......+ .+|.+++.++|+ .++.++
T Consensus 180 v~~ai~~v~~lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~-afil~f 258 (550)
T KOG1289|consen 180 VFEAILFVHGLLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGW-AFILGF 258 (550)
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchH-HHHHhh
Confidence 88889999999999999999999999999999988877776655322 223334555554 467778
Q ss_pred HHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCC---CC--CcHHHHHHHHhChhH
Q 040051 273 AVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDI---DP--NAAYSVAFQRVGMKW 347 (590)
Q Consensus 273 ~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~~~ 347 (590)
....|++.|+|+.+|++||+|||+|+.||||+.++.+..++-....+.+...+|+|.- ++ .+|+.+.+...-++-
T Consensus 259 ~~~~wt~sGyDa~~H~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k 338 (550)
T KOG1289|consen 259 FNPAWTMSGYDAAAHMAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK 338 (550)
T ss_pred ccceeEEeccCchHHHHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCC
Confidence 8889999999999999999999999999999999999999999999998888885321 22 469999888665555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHH-----hhHHH
Q 040051 348 AKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALF-----SGLDI 420 (590)
Q Consensus 348 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~ 420 (590)
....+....+++.+.+..+.+.+.||+.|+.||||.+| ++++++||++++|.+|+++..+++.++.++ ..++.
T Consensus 339 ~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~A 418 (550)
T KOG1289|consen 339 GAVFLLSLIIIALFFMGISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNA 418 (550)
T ss_pred ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 55777788888888899999999999999999999999 999999998899999999999999888776 46788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHH
Q 040051 421 LSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLG 500 (590)
Q Consensus 421 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (590)
+.+.+.++..++|....+..+..+|+ ..++.+ |++|+.+. +..+..++|.++.++
T Consensus 419 lfs~a~i~l~~Ay~iP~~~rlf~~r~---~f~~gp---------------------~~lGk~s~-p~~~i~v~w~lf~~v 473 (550)
T KOG1289|consen 419 LFSAAAIALFIAYAIPIFCRLFFGRD---DFRPGP---------------------FNLGKFSK-PIGIIAVLWVLFMIV 473 (550)
T ss_pred HHHHHHHHHHHHHHHhHHhheeeccc---ccCCCC---------------------cccccccc-chHHHHHHHHHHHHH
Confidence 88888888888888887777665544 122233 67777777 555566999999999
Q ss_pred HHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccccccccc
Q 040051 501 ISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHATYDMAHQ 570 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~~~~~~~ 570 (590)
+.++|+..+... .+||| +.++.++.++.++++|+.++|| ..++++.
T Consensus 474 il~fP~~~pvT~----------------------~~MNy-a~VV~gg~~lf~li~~~~~~~k-~f~gP~~ 519 (550)
T KOG1289|consen 474 ILCFPSVYPVTA----------------------DNMNY-ACVVYGGVMLFCLIYYFVSARK-WFKGPIP 519 (550)
T ss_pred HHhCCcccCCCc----------------------ccCce-EEEeehhhhhhhhheeeeecce-eecCCcc
Confidence 999999866543 57888 7788899999999999888666 4444443
No 23
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=100.00 E-value=3.2e-50 Score=430.20 Aligned_cols=360 Identities=19% Similarity=0.250 Sum_probs=303.0
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccc-cccchhhhHHHhc
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPV-AGGSFAYLRIELG 150 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~-~Gg~y~~~~~~~g 150 (590)
||+++.+|+.+++++.++|+|+|..++..+.. +||. .+++|++++++.++.+++++||++++|+ .||.|.|+++.+|
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~-~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g 79 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALAT-GGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVD 79 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHh-cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcC
Confidence 58899999999999999999999999999887 8985 7999999999999999999999999995 5567789999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|.+||.+||.+|++++...+......+.++..+.+.. + ...+..+++++.+++|++|+|..+++|
T Consensus 80 ~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~-----~~~~~~~~~~~~~~in~~gv~~~~~~~ 144 (478)
T TIGR00913 80 PAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDKV----------N-----PAVWIAIFYVFIVIINLFGVKGYGEAE 144 (478)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC----------C-----HHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999999999999988888887543211 0 113334556778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--ccC---C--------CCCCCCCC----ChhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 231 WIASAINTVVILFVIIVGFAH--ADA---S--------NLKPFLPF----GSEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~--~~~---~--------~~~~~~~~----g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
.+++.+|++.++.+++.++.. .+. . +..++.+. ++.++..++..++|+|.|+|.+++++||+|
T Consensus 145 ~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k 224 (478)
T TIGR00913 145 FWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAA 224 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhc
Confidence 999999988777666554331 110 0 11122222 256788889999999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC----------CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID----------PNAAYSVAFQRVGMKWAKYLVALGALKGMTTV 363 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 363 (590)
||+||+|||++.+..+++++|++..++.....|.++.+ .++|+..+.+..+.++...++.+.++++.+++
T Consensus 225 nP~r~iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~ 304 (478)
T TIGR00913 225 NPRKSIPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSA 304 (478)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999988888888866421 12688777788888888899999999999999
Q ss_pred HHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHH
Q 040051 364 LLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF------SGLDILSALLSLSTLFVFMMMA 437 (590)
Q Consensus 364 ~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~ 437 (590)
.++.+++.||++|+|||||.+|++|+|+| |+++|++|++++++++.+..+. ..++.+.++.+...++.|++.+
T Consensus 305 ~~~~~~~~sR~l~a~ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~i~y~~~~ 383 (478)
T TIGR00913 305 ANSSLYASSRTLYALAHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNISGLSGFFTWMCIC 383 (478)
T ss_pred HHhhHHHHHHHHHHHHhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 7899999999999887654332 2478899999999999999999
Q ss_pred HHHHHHhhhccC
Q 040051 438 VALLVRRYYVRE 449 (590)
Q Consensus 438 ~~~~~~r~~~~~ 449 (590)
++.+++|++.++
T Consensus 384 ~~~i~~r~~~~~ 395 (478)
T TIGR00913 384 LSHIRFRKAMKA 395 (478)
T ss_pred HHHHHHHHHHHh
Confidence 999998876543
No 24
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=100.00 E-value=3.1e-50 Score=428.63 Aligned_cols=414 Identities=21% Similarity=0.255 Sum_probs=324.6
Q ss_pred ccccccccCCHHHHHHHHhhhh-hcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAV-IGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLR 146 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~-ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~ 146 (590)
++|+|||+++.++.++++++.+ ++.|++..++..+.. +||..+++|+++++..++.+++++||++++|++||.|+|++
T Consensus 7 ~~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~-~Gp~~~~~~li~~i~~l~~als~aEL~s~~P~aGG~Y~~~~ 85 (475)
T TIGR03428 7 YQPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGF-GGPAFFWTWPVVFVGQLLVALNFAELAARYPISGAIYQWSR 85 (475)
T ss_pred CccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCHHHHHH
Confidence 7889999999999999999986 789999999999877 99999999999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-----CCCccccccccccccCchhHHHHHHHHHHHHHHhh
Q 040051 147 IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNR-----EPNSLRIHTNLREGYNLLDPIAVAVLATAATIASI 221 (590)
Q Consensus 147 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (590)
+.+||.+||++||.+++++....+........++..+.+. .++++. .+....+...++++++++.+++|++
T Consensus 86 ~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~in~~ 161 (475)
T TIGR03428 86 RMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLT----SPSGAANAVLLGSVLLVLTTVINCI 161 (475)
T ss_pred HHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCcccc----CCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999887777776665555443210 011110 0111112446777788889999999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCC---CC----CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccC
Q 040051 222 STRKTSVLNWIASAINTVVILFVIIVGFAHADASN---LK----PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKN 294 (590)
Q Consensus 222 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---~~----~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~ 294 (590)
|+|..++++.+..+++++.++++++.++.+.+.+. +. +..+.....++.+....+|+|.|+|.+++++||+||
T Consensus 162 g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE~kn 241 (475)
T TIGR03428 162 GVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEETKN 241 (475)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhcC
Confidence 99999999999999998877777666654433211 11 111111344666777889999999999999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCC--CCCCcHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHhhhch
Q 040051 295 PSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTD--IDPNAAYSVAFQ-RVGMKWAKYLVALGALKGMTTVLLVGALGN 371 (590)
Q Consensus 295 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 371 (590)
|+||+|||+..++.++.++|.+..+......|..+ ...+++.+.++. ..+.++.. .+...++++.+++.++.+.+.
T Consensus 242 P~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~ 320 (475)
T TIGR03428 242 PRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGT-VLLVDVAIAILVCTLAIQTAG 320 (475)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888877777665554321 111222233333 44555544 444566778889999999999
Q ss_pred hHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 372 ARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALF-----SGLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 372 sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
||++|++||||.+| ++|+|+|||+++|++|+++.++++.++.++ ..++.+.++.+....+.|.+..++.+.+|
T Consensus 321 sR~~~a~Ardg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~~~~~~~~~Y~~~~~~~l~~~ 400 (475)
T TIGR03428 321 SRLMFSMARDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASVCIVLIYLAYLLVTVPLLLRR 400 (475)
T ss_pred HHHHHHHHhcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 589999999999999999999998776665 35788999999999999999998888766
Q ss_pred hhc-c---CCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCC
Q 040051 445 YYV-R---EITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQR 509 (590)
Q Consensus 445 ~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (590)
+|. | +..++.. |++|++|+ .+++++++|.++..++.++|+..+
T Consensus 401 ~~~~~~~~~~~~~g~---------------------f~lg~~g~-~vn~~a~~~~~~~~v~~~~P~~~~ 447 (475)
T TIGR03428 401 LRGWPRGDQTDPAGL---------------------FSLGRWGL-PVNILAVVYGALMVVNLSWPRPEV 447 (475)
T ss_pred HhccCCccCCCCCCC---------------------CCCchhHH-HHHHHHHHHHHHHHHHHHCCCCCC
Confidence 543 1 1112222 88888766 999999999999999999998644
No 25
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=100.00 E-value=9.8e-50 Score=424.58 Aligned_cols=418 Identities=19% Similarity=0.247 Sum_probs=342.9
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccc-cccchhhhHHHh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPV-AGGSFAYLRIEL 149 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~-~Gg~y~~~~~~~ 149 (590)
++|++|.++.++++++.++|+|+|..++..... +|+. .+++|++++++.++.+++|+|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~-~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~ 83 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASV-AGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGF 83 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHc
Confidence 478999999999999999999999999987765 8886 7899999999999999999999999999 999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
||..||.+||.+|+.+.......+....+++..+++..... ........+++++++.+.+|++|+|..+++
T Consensus 84 G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i 154 (473)
T TIGR00905 84 GPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSG---------NPVPSILGASVLLWVFTFLVLRGVRQAAFI 154 (473)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC---------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHH
Confidence 99999999999999988887777777778887776521100 001133566777778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCC-CCC-------CCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhh
Q 040051 230 NWIASAINTVVILFVIIVGFAHADASNLK-PFL-------PFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPI 301 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~-------~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 301 (590)
|.+.+.++++.++++++.++...+.+++. ++. ++++.++..++...+|+|.|+|.+++++||+|| +||+||
T Consensus 155 ~~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPr 233 (473)
T TIGR00905 155 NTITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGK 233 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchH
Confidence 99999999988888777776543333221 111 123456778888899999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCcH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDID-PNAA-YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
++..+..+++++|++...+.....|.+++. .++| ..++.+...+++...++.+..+++.+++.++.+.+.||++|+||
T Consensus 234 ai~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~ama 313 (473)
T TIGR00905 234 ATVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSAA 313 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988888887764 3567 67777777778888899999999999999999999999999999
Q ss_pred hcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc
Q 040051 380 RAHMIPPWFALVHPKTGTPINANLLIVLASALIALF-----SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRK 454 (590)
Q Consensus 380 rd~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 454 (590)
|||.+|++|+|+|| +++|++|++++++++.++.+. .+++.+.++.+...++.|.+.+++.+++|+|++ .++.
T Consensus 314 rdg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~~~-~~~~- 390 (473)
T TIGR00905 314 KDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAVVMILVPYLLSAAYLLKLAKVGT-YPKI- 390 (473)
T ss_pred hCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-cccc-
Confidence 99999999999995 599999999999887655443 468899999999999999999999999887641 1100
Q ss_pred chhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 040051 455 NLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLM 534 (590)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 534 (590)
+.|..++++.++++.++++.
T Consensus 391 ------------------------------------------------------------~~~~~~~~~~l~~~~~~~~~ 410 (473)
T TIGR00905 391 ------------------------------------------------------------KNRKALIVGVIACVYSIWLL 410 (473)
T ss_pred ------------------------------------------------------------ccchHHHHHHHHHHHHHHHH
Confidence 11224556666666666666
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 040051 535 GSLGYQAFVRFGICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 563 (590)
...+..+.....+++++|+..|.+++|++
T Consensus 411 ~~~~~~~~~~~~~~~~~g~~~y~~~~~~~ 439 (473)
T TIGR00905 411 YAAGLKYLLLGFILYAPGIIFYGRARKER 439 (473)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 66666566677888899988887765553
No 26
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-51 Score=410.90 Aligned_cols=403 Identities=22% Similarity=0.334 Sum_probs=352.0
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccCh-H-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGP-A-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYL 145 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~ 145 (590)
++.++||+++.+..+.+.+++++|+|+|..|..+..+ +|+ + ++..|+..+++++..++||+||++.+|++||.|.|.
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~-~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi 84 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLAN-TGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYI 84 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHc-CCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhH
Confidence 3456799999999999999999999999999999987 665 4 788899999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhch
Q 040051 146 RIELGDFAAFITAGNILLESI-VGGAAVARAWTSY-FTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIST 223 (590)
Q Consensus 146 ~~~~g~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 223 (590)
.+++||.+||...|.-++... .+.+..+..+++| ++..++. + ..+......++.+++++++++|+.++
T Consensus 85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~--c--------~~p~~~~~lla~~~l~~lt~~n~~~V 154 (479)
T KOG1287|consen 85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPL--C--------DVPRVASKLLAAALLVLLTLINSFSV 154 (479)
T ss_pred HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCC--C--------CCchHHHHHHHHHHHHHHHHHhhhhh
Confidence 999999999999997766655 4559999999999 6666651 1 22222356899999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccc---cCCCCCCC-CC---CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCC
Q 040051 224 RKTSVLNWIASAINTVVILFVIIVGFAHA---DASNLKPF-LP---FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPS 296 (590)
Q Consensus 224 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~---~~~~~~~~-~~---~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 296 (590)
|+..++|.+++..|++.+.++++.++... +.+|+... .+ .+...+..++...+|+|.|||.....+||+|||+
T Consensus 155 ~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ 234 (479)
T KOG1287|consen 155 KWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPR 234 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCcc
Confidence 99999999999999999999999988743 22332211 11 2234467788889999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 297 RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAF-QRVGMKWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 297 r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
||+|||+..++.+++++|+++.++...++++|++..++....-+ +..++.+. +++.+.+.++++++.++.+++.||++
T Consensus 235 ktLP~Ai~isi~lvt~iYil~NvAy~~vls~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~ 313 (479)
T KOG1287|consen 235 RTLPRAILISIPLVTVIYVLVNVAYFTVLSPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLF 313 (479)
T ss_pred ccchHHHHHhhHHHHHHHHHhHhheeEecCHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999886555544444 46666666 99999999999999999999999999
Q ss_pred HHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccc
Q 040051 376 THIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKN 455 (590)
Q Consensus 376 ~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~ 455 (590)
+++||+|++|+.|+..|++..+|..+++++++.+++..+.++++.+++..++...+.+.+..++++++|+|+|+.+||.|
T Consensus 314 ~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 314 YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 99999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHhhhcCCCCC
Q 040051 456 LLMLVIFLLIIIASSAGISAYWGLKPN 482 (590)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (590)
..-..+.+..++|..+.+..++.....
T Consensus 394 vpl~~p~~~~~~~i~lvvip~~~~~~~ 420 (479)
T KOG1287|consen 394 VPLFIPILFLLICIFLVVIPIISDFPV 420 (479)
T ss_pred eeeehHHHHHHHHHHHhheeeeecCCc
Confidence 877888888888988888888876443
No 27
>PRK11021 putative transporter; Provisional
Probab=100.00 E-value=5.6e-49 Score=412.00 Aligned_cols=354 Identities=17% Similarity=0.221 Sum_probs=292.0
Q ss_pred CCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHH
Q 040051 76 LTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAF 155 (590)
Q Consensus 76 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~ 155 (590)
+|+++.+++.+++++|+|+|..++..+.. +||.++++|++++++.++.+++++|+++++|++||.|.|+++.+||.+||
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~-aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~aGG~y~y~~~~~G~~~gf 79 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALV-AGNNSLWAWPLLILLIFPIAIVFARLGRHFPHAGGPAHFVGMAFGPRLGR 79 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHh-cCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHhHHHHhCchhHH
Confidence 57899999999999999999999999877 89999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 040051 156 ITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASA 235 (590)
Q Consensus 156 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 235 (590)
.+||.+++.+....+........++...++... +. ...+.++++++.+.+|++|+|..++++.+..+
T Consensus 80 ~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~ 146 (410)
T PRK11021 80 VTGWLFLSVIPVGLPAALQIAAGFGQALFGWSS--WQ-----------LLLAELLTLALLWLLNLRGASSSANLQTVIAL 146 (410)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCC--ch-----------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 999999988776666555556667766654321 10 23566777888899999999999999998876
Q ss_pred HHHHHHHHHHHhhhccccCCCC--CCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHH
Q 040051 236 INTVVILFVIIVGFAHADASNL--KPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITII 313 (590)
Q Consensus 236 ~~i~~~~~~~i~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~ 313 (590)
+.+..+..+... .+.+..++ .+..+.++.++..++..++|+|.|+|.+++++||+|||+||+|||++.+..+++++
T Consensus 147 ~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~l 224 (410)
T PRK11021 147 LIVALVVAIWWA--GDIKPADIPFPAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLV 224 (410)
T ss_pred HHHHHHHHHHHH--cCCchhcCCCCCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHH
Confidence 554433222211 11122222 22334567888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccC
Q 040051 314 YCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVH 392 (590)
Q Consensus 314 y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~ 392 (590)
|++.+++.....|.++.. .+.|..++++...+++...++.+..+++.+++.++.+.+.||++++|||||.+||+|+|+|
T Consensus 225 Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~ardg~lP~~~~k~~ 304 (410)
T PRK11021 225 YWACTVVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQAREGRPPSYLARLS 304 (410)
T ss_pred HHHHHHHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHhhc
Confidence 999998877666655442 3457777777655566667788888899999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 393 PKTGTPINANLLIVLASALIALF-----SGLDILSALLSLSTLFVFMMMAVALLVRRYY 446 (590)
Q Consensus 393 ~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 446 (590)
|+++|+++++++.+++.+..++ .+++.+.++.+...++.|.+.+++.++++++
T Consensus 305 -~~~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~a~~~l~~~ 362 (410)
T PRK11021 305 -ARGVPVNALNAVLGCCAVSILLIYALGLNLEALIAYANGIFVLIYLLCMLAACKLLKG 362 (410)
T ss_pred -cCCCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6799999999998887665443 4688899999999999999999999987754
No 28
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=100.00 E-value=3.1e-49 Score=422.67 Aligned_cols=441 Identities=17% Similarity=0.230 Sum_probs=340.6
Q ss_pred ccccccccCCHHHHHHHHhhhhh-cchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVI-GAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYL 145 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~ 145 (590)
+++++||+++.++.++++++.+. ..|++...+..... +||. .+++|++++++.++.+++++||++++|++||.|+|+
T Consensus 6 ~~~~l~r~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~~Gg~y~~~ 84 (482)
T TIGR00907 6 YKPELKREFSLWSIFGFAFSISNSWTGISTTYNYGLSS-GGAMSIVWGWIIAGAGSICIALSLAELSSAYPTSGGQYFWS 84 (482)
T ss_pred CcceeecccchhHHHHHHHHHHHHHHHHHHHHHHhhhc-CCccchhHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHH
Confidence 77889999999999999999652 36888877766655 8884 899999999999999999999999999999999999
Q ss_pred HHHhc----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCc--cccccccccccCchhHHHHHHHHHHHHHH
Q 040051 146 RIELG----DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNS--LRIHTNLREGYNLLDPIAVAVLATAATIA 219 (590)
Q Consensus 146 ~~~~g----~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 219 (590)
+|.+| +..||++||.+++++....++.....+.++........+. +. +..+ ....+.++++++.+++|
T Consensus 85 ~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 85 AKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYI-----PTRW-HIFGIMIGIHLIHALIN 158 (482)
T ss_pred HHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcc-----ccCc-hhhhhHHHHHHHHHHHH
Confidence 99887 5779999999999999999998888888887665332111 11 1111 13356677788899999
Q ss_pred hhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccC--C--C--CCC-------CCCCChhhHHHHHHHHHHhhcchhhhh
Q 040051 220 SISTRKTSVLNWIASAINTVVILFVIIVGFAHADA--S--N--LKP-------FLPFGSEGIFKAAAVVYFAYGGFDNIA 286 (590)
Q Consensus 220 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~--~--~~~-------~~~~g~~~~~~~~~~~~~~~~G~e~~~ 286 (590)
++|+|..++++.+..+++++.++++++..+...+. + + +.+ +.++++ +++.++..+.|+|.|+|.++
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~-~~~~~~~~~~fsf~G~e~~~ 237 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGF-AFLLGLLNPAWSMTGYDGTA 237 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCch-hhhhhhhhhHHHhcCcchhh
Confidence 99999999999999988887776555444332211 1 1 111 122232 45666777889999999999
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc-CCCC-C--CCcHHHHHHHH-hChhHHHHHHHHHHHHHHH
Q 040051 287 TMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQP-YTDI-D--PNAAYSVAFQR-VGMKWAKYLVALGALKGMT 361 (590)
Q Consensus 287 ~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~-~~~~-~--~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~ 361 (590)
+++||+|||+||+|||+..++.+..+++++..+......+ .+++ + .++|+.+++.. .|.++...++.+.++++.+
T Consensus 238 ~~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~ 317 (482)
T TIGR00907 238 HMAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSF 317 (482)
T ss_pred HHHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHH
Confidence 9999999999999999999998877766555554433332 2222 1 12588887765 4665777788888889999
Q ss_pred HHHHHhhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHH
Q 040051 362 TVLLVGALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALF-----SGLDILSALLSLSTLFVFM 434 (590)
Q Consensus 362 ~~~~~~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~ 434 (590)
++.++.+++.||++++|||||.+| ++|+|+|||+++|++|++++.+++.++.++ ..++.+.++.+...++.|.
T Consensus 318 ~~~~~~~~~~sR~l~a~ardg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~~~~~~~i~y~ 397 (482)
T TIGR00907 318 FCAITCMTANSRMIYAFSRDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSVCTVALDVSYV 397 (482)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 999999988899999999999998776655 3688999999999999999
Q ss_pred HHHHHHHHHhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 040051 435 MMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTW 514 (590)
Q Consensus 435 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (590)
+..++.+++|++ ++.+++ |++++++. ..+.+.++|..+.++..++|+..+.+.
T Consensus 398 ~~~~~~l~~~~~-~~~~~~-----------------------f~lg~~~~-~~~~~~~~~~~~~~v~~~~P~~~p~~~-- 450 (482)
T TIGR00907 398 IPIICKLAKGRN-TIAPGP-----------------------FWLGKYGF-FVNAVAVAWTVFSSVLFSFPPVLPVTP-- 450 (482)
T ss_pred HHHHHHHHhcCC-CCCCCC-----------------------CcCCcchH-HHHHHHHHHHHHHHhheeCCCCCCCCc--
Confidence 988877654443 334444 33444443 677778889999999999988643321
Q ss_pred ccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 040051 515 GVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 515 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
..+|| ..++.++.++++.++|+.++||+-
T Consensus 451 --------------------~~~ny-~~~~~~~~~~~~~~~~~~~~r~~~ 479 (482)
T TIGR00907 451 --------------------ENMNY-AVVVFAGVLAISLVYWKYKGRKEF 479 (482)
T ss_pred --------------------ccCCh-HhHHHHHHHHHHHHHheEeceeec
Confidence 46677 455668888999999988777743
No 29
>TIGR00930 2a30 K-Cl cotransporter.
Probab=100.00 E-value=9.1e-49 Score=437.87 Aligned_cols=402 Identities=15% Similarity=0.156 Sum_probs=325.5
Q ss_pred ccccccCCHHHHHHHH-hhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhhH
Q 040051 70 NDMKRCLTWWDLTWFG-FGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIE-IPVAGGSFAYLR 146 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~-~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~-~P~~Gg~y~~~~ 146 (590)
+..+|++|+++.+++. +++++|+|+|..+++++.+ +|.. ++++|++++++++++++|++|++++ +|++||.|.|++
T Consensus 72 ~~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~-aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yis 150 (953)
T TIGR00930 72 PAGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQ-AGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLIS 150 (953)
T ss_pred CCCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHH
Confidence 3456899999999986 9999999999999999988 8876 8899999999999999999999998 999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhh
Q 040051 147 IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKT 226 (590)
Q Consensus 147 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 226 (590)
|.+||.+|+.+||.+++++.+..+.++.++++|+..+++...... ...+.+...+++++++++++++|++|+|..
T Consensus 151 ralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-----~~~~~~~~~iia~i~l~ll~~In~~Gvk~~ 225 (953)
T TIGR00930 151 RSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-----MVDPINDIRIYGTVTVVVLLGISFAGMEWE 225 (953)
T ss_pred HHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-----ccCccccchHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999999999875321100 001111244788889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCC---------------CCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhh
Q 040051 227 SVLNWIASAINTVVILFVIIVGFAHADAS---------------NLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEE 291 (590)
Q Consensus 227 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---------------~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 291 (590)
+++|.++++++++.++.+++.++...... |+.+..+.+..+++..+...+++|+|+|+.+++++|
T Consensus 226 ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~sgE 305 (953)
T TIGR00930 226 NKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANISGD 305 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998888777665422110 111111222233667777788899999999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-Cc------------------HHHHH----HHH-hChhH
Q 040051 292 TKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NA------------------AYSVA----FQR-VGMKW 347 (590)
Q Consensus 292 ~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~------------------~~~~~----~~~-~~~~~ 347 (590)
+|||+|++|||++.++++++++|++..+++....+.+.... +. |.... +.. .....
T Consensus 306 lKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~~~ 385 (953)
T TIGR00930 306 LKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLVSP 385 (953)
T ss_pred ccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhhhh
Confidence 99999999999999999999999999988887777543221 00 11111 111 11122
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHH
Q 040051 348 AKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALL 425 (590)
Q Consensus 348 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~ 425 (590)
...++.++++++.+++.+++++++||++++|||||.+| ++|+|+|+|+++|++|+++++++++++.++++++.+..+.
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl~AmArDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~~l~~ia~li 465 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLFQALCKDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIAELNTIAPII 465 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45788999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhc-cCCCCccch-hHHHHHHHHHHHHHhHHhhhc
Q 040051 426 SLSTLFVFMMMAVALLVRRYYV-REITPRKNL-LMLVIFLLIIIASSAGISAYW 477 (590)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~r~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 477 (590)
+.+++++|+++++++++.|.++ |+.++.+|+ .+++.+++++.|+++++.+.|
T Consensus 466 s~~fLl~Y~lvnla~~~l~~~~~p~~RP~fk~~~~~~sllG~l~c~~lmf~i~w 519 (953)
T TIGR00930 466 SNFFLASYALINFSCFHASLLRSPGWRPRFKYYHWWLSLLGASLCCAIMFLISW 519 (953)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999888654 454544443 345666666666666666544
No 30
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=100.00 E-value=7.6e-48 Score=409.54 Aligned_cols=413 Identities=16% Similarity=0.224 Sum_probs=332.3
Q ss_pred ccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccccc-ccchhhhHHHhch
Q 040051 74 RCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVA-GGSFAYLRIELGD 151 (590)
Q Consensus 74 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~-Gg~y~~~~~~~g~ 151 (590)
|++|+++.+++.+++++|+|+|..++..+.. +||. .+++|+++++..++.+++++|+++++|++ ||.|+|+++.+||
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~-ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG~y~y~~~~fG~ 79 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAG-AAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGGVYSYAKAGFGP 79 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHcCc
Confidence 6899999999999999999999999998876 7886 78899999999999999999999999986 5999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
..||++||.+|+++......+......++..+++..... ........+.++++++..+|++|+|..+++|.
T Consensus 80 ~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~ 150 (468)
T TIGR03810 80 FMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGG---------NNPPSIIGASVLLWCVHFLVLRGVEGAAFINT 150 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC---------CcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 999999999999988777666666666666554321100 00012345566677788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCC---------C-CCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhh
Q 040051 232 IASAINTVVILFVIIVGFAHADASNLKP---------F-LPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPI 301 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~---------~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 301 (590)
+.+++|++.++++++.++...+.+++.. + .++.+.++..++...+|+|.|+|.+++++||.|| +||+||
T Consensus 151 i~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~-~k~ip~ 229 (468)
T TIGR03810 151 ITTIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEK-RSDVGK 229 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccC-cccchH
Confidence 9999999988887776654333222111 0 1112345667788899999999999999999999 799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-CcH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDIDP-NAA-YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
++..+..+++++|++..++.....|.+++.+ ++| ...+++...+++...++.+.++++.+++.++.+.+.||++|+||
T Consensus 230 ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~a 309 (468)
T TIGR03810 230 ATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLMA 309 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999888888777643 445 66777777888999999999999999999999999999999999
Q ss_pred hcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCcc
Q 040051 380 RAHMIPPWFALVHPKTGTPINANLLIVLASALIALF-----SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRK 454 (590)
Q Consensus 380 rd~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 454 (590)
|||.+|++|+|+| |+|+|+++++++.+++.++.+. ..++.+.++.+...++.|.+.+++.+++|+|+++ ++ .
T Consensus 310 rdg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~~~~li~y~~~~~~~~~l~~~~~~-~~-~ 386 (468)
T TIGR03810 310 KDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLATSAILVPYLWSAAYQVKLSWRGGQ-ER-G 386 (468)
T ss_pred hCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc-c
Confidence 9999999999999 7899999999998887655443 4688899999999999999999999998876531 11 0
Q ss_pred chhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHH
Q 040051 455 NLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLM 534 (590)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 534 (590)
|+ + .++.+.++.+.+++++
T Consensus 387 ~~---------------------------------------------------------~----~~~~~~l~~~~~~~~~ 405 (468)
T TIGR03810 387 RR---------------------------------------------------------K----QLLIGLVALLYAVWLI 405 (468)
T ss_pred hh---------------------------------------------------------h----hHHHHHHHHHHHHHHH
Confidence 10 0 0345666666666666
Q ss_pred hcCChhhHHHHHHHHHHHHHHHHHHhh
Q 040051 535 GSLGYQAFVRFGICTLVMLVYYFFFGL 561 (590)
Q Consensus 535 ~~~~~~~~~~~~~~~~i~~~~y~~~~~ 561 (590)
....+.......+.+++|+..|...+|
T Consensus 406 ~~~~~~~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 406 YAAGLKYLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666677777788888888855333
No 31
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=100.00 E-value=1.9e-46 Score=399.79 Aligned_cols=435 Identities=17% Similarity=0.222 Sum_probs=323.0
Q ss_pred ccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHH-HHHHHHHHHhhhcccccccchhhhHHHhchh
Q 040051 74 RCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSA-MLSVFCYTEFAIEIPVAGGSFAYLRIELGDF 152 (590)
Q Consensus 74 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~ 152 (590)
||++.++++++.+..+++. ...+.. .. .|+..++.|++++++. ++.+++++||++++|++||.|.|+++.+||.
T Consensus 1 ~~~~~~~l~~~~~~~v~~~--~~~~~~--a~-~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~~GG~y~~~~~a~G~~ 75 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSL--RGLPAE--AE-YGLSAAFYYLFAAIFFLVPVSLVAAELATAWPEKGGVFRWVGEAFGAR 75 (474)
T ss_pred CcccHHHHHHHHHHHHHHh--hcchHH--HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCceeeHhhhcChh
Confidence 4699999999998888653 222322 23 7888999999999876 5799999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHH
Q 040051 153 AAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWI 232 (590)
Q Consensus 153 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~ 232 (590)
+||.+||.+|+++++..+......+..+.......... +..+.+......+.++++++.+.+|++|+|..++++.+
T Consensus 76 ~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i~~~ 151 (474)
T TIGR03813 76 WGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVD----ESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKVAKW 151 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccC----cccccccHHHHHHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 99999999999998766554433333333221110000 11111111122455666667889999999999999988
Q ss_pred HHHH-HHHHHHHHHHhhhcc---ccCC----CCCCCCCC--ChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhH
Q 040051 233 ASAI-NTVVILFVIIVGFAH---ADAS----NLKPFLPF--GSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIG 302 (590)
Q Consensus 233 ~~~~-~i~~~~~~~i~~~~~---~~~~----~~~~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a 302 (590)
...+ +++.++++++.++.. .+.. ++.++.|+ ++.....+ ...+|+|.|+|.++..+||+|||+||+|||
T Consensus 152 ~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~iPrA 230 (474)
T TIGR03813 152 GGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNYPIA 230 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccchhHH
Confidence 7554 344444444444321 1111 11122232 23333322 345789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcH----HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 040051 303 LLGSMSMITIIYCLMALSLCVMQPYTDIDPNAA----YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 303 ~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 378 (590)
+..+..+++++|++..+++...+|+++...+++ +.++.+..+.++...++.+..+++.+++.++.+.+.||+++++
T Consensus 231 i~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~~a~ 310 (474)
T TIGR03813 231 ILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGMLAV 310 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998899887754433 3344555677788888888888899999999999999999999
Q ss_pred HhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 040051 379 ARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF--------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREI 450 (590)
Q Consensus 379 ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 450 (590)
||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++.+++.+++|+|+|+.
T Consensus 311 ardg~lP~~~~kv~-k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr~~~~~~ 389 (474)
T TIGR03813 311 AKAGYLPTFFQKTN-KNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLRYSQPDR 389 (474)
T ss_pred hhcCCCCHHHhccC-CCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999 8899999999998876544332 23678888989889999999999999999888877
Q ss_pred CCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHH
Q 040051 451 TPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATN 530 (590)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 530 (590)
+|++|. ..++++.+..+..++++.++.+++.++|+.++...
T Consensus 390 ~rpf~~---------------------p~g~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~------------------ 430 (474)
T TIGR03813 390 PRPYRI---------------------PGGLAGMWFIGGLGFVGSALAFVLSFIPPSQIGTG------------------ 430 (474)
T ss_pred CCCeEe---------------------cCCccchhHHHHHHHHHHHHHHheeEeCCcccCCC------------------
Confidence 776552 22445556889999999999999999998755432
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHHHHHHhhcc
Q 040051 531 IFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 531 ~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~ 563 (590)
.++|| +.+..++.+++..++|+.++||+
T Consensus 431 ----~~~ny-~~~~~~~~~~~~~~~~~~~~~~~ 458 (474)
T TIGR03813 431 ----SPTRY-VGLLIGLAALFVTAPFLIYARRK 458 (474)
T ss_pred ----chHHH-HHHHHHHHHHHHHHHHHHHHHhc
Confidence 34566 55566777777888888877664
No 32
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=100.00 E-value=8.6e-45 Score=387.38 Aligned_cols=403 Identities=16% Similarity=0.162 Sum_probs=297.8
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHH-HHHHHHHHHHhhhccc-ccccchhhhHHHhc
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVS-AMLSVFCYTEFAIEIP-VAGGSFAYLRIELG 150 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~~~~P-~~Gg~y~~~~~~~g 150 (590)
+|+++.++++++.++.+.+ ++..+. . .. .|...+..|++++++ .++.+++++||++++| ++||.|.|+++.+|
T Consensus 3 ~~~l~~~~~~~~~~~~v~~--~~~~~~-~-a~-~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~GG~y~wv~~a~G 77 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVLA--VYEYPT-F-AT-SGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEGGIFAWVSNTLG 77 (507)
T ss_pred CcEeeHHHHHHHHHHHHHH--HHhhHH-H-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCeeeehhhccC
Confidence 5779999999999998854 443342 2 23 688877778888877 6889999999999997 99999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|.+||+++|.+|+......+.........+......+ +.+.+.....+..++++++.+++|++|+|..++++
T Consensus 78 ~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~~--------~~~~~~~~~~i~~l~i~~~~t~~n~~G~k~~~~i~ 149 (507)
T TIGR00910 78 ERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKFP--------ALNEDPIIKFIAALIIFWALAFSQFGGTKRTAKIA 149 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--------hhccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 9999999999999887655443322222222222111 11111111334555667788999999999999999
Q ss_pred HHHHHHHHHH-HHHHHHhhhcc---ccCC----CCCCCCCCC-hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhh
Q 040051 231 WIASAINTVV-ILFVIIVGFAH---ADAS----NLKPFLPFG-SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPI 301 (590)
Q Consensus 231 ~~~~~~~i~~-~~~~~i~~~~~---~~~~----~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 301 (590)
.+..+..++. ++++++.+... .++. +..++.|+. ..+.+..+...+|+|.|+|.+++++||+|||+||+||
T Consensus 150 ~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~~Pr 229 (507)
T TIGR00910 150 KAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRDYPL 229 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCcccccH
Confidence 8876554443 33333323221 1111 112333321 1233444555689999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHH----HHHhC--hhHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVA----FQRVG--MKWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
|++.+++++.++|.+..+.+...+|.+++..+++..+. ....+ .++...++.+..+++.+++.++++++.||++
T Consensus 230 Ai~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~sR~l 309 (507)
T TIGR00910 230 AMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPSRGM 309 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888877654433332 33333 2567778888889999999999999999999
Q ss_pred HHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH---------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 376 THIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF---------SGLDILSALLSLSTLFVFMMMAVALLVRRYY 446 (590)
Q Consensus 376 ~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~ 446 (590)
+++||||.+|++|+|+| |+++|+++++++++++.++.++ ..++.+.++.+...++.|++..++++++|+|
T Consensus 310 ~~~ardg~lP~~~~k~n-k~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~i~Y~l~~~a~i~lr~k 388 (507)
T TIGR00910 310 FAAAQKGLLPAAFAKMN-KHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTVVIYLCAYFLFFIGYFVLILK 388 (507)
T ss_pred HHhcccCCcCHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999 8899999999999988765432 1345667778889999999999999999999
Q ss_pred ccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCC
Q 040051 447 VREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRT 510 (590)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (590)
+|+.+|++|. ..+..+.+..+++++++.++.+++.++|+..+.
T Consensus 389 ~p~~~rpf~~---------------------pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~ 431 (507)
T TIGR00910 389 HPDLKRTFNI---------------------PGGIGGKLIIAGIGFLLSIFAFFISFLPPANIA 431 (507)
T ss_pred cCCCCCCeEe---------------------cCCccchhhHHHHHHHHHHHHHheeeeCCCccC
Confidence 9888877662 122234457788888888888888888876443
No 33
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=100.00 E-value=2.4e-43 Score=372.66 Aligned_cols=362 Identities=28% Similarity=0.490 Sum_probs=310.9
Q ss_pred CCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHH-HHHHHHHHHhhhcccccccchhhhHHHhchhhH
Q 040051 76 LTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSA-MLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAA 154 (590)
Q Consensus 76 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g 154 (590)
+|+++.++++++.++|+|++..+ .... +|+..+++|++++++. ++.+++|+|+++++|++||.|.|+++.+||.+|
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~--~~~~-~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~~GG~y~~~~~~~g~~~g 77 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP--AAAS-AGPSAILAWIIAALLFFLPIALSYAELSSAYPSAGGIYVWVSRAFGPFWG 77 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH--HHTC-TGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSTTHHHHHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH--HHHH-HhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCeeeehhhhcccccch
Confidence 58999999999999999998877 3333 8888898999999887 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 040051 155 FITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIAS 234 (590)
Q Consensus 155 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~ 234 (590)
+.++|.+++.+....+..+..+++++...++.+-. ........++++++++.+.+|++|.|..++++.+.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~ 148 (426)
T PF13520_consen 78 FIVGWLYWVAYILSLASVASSFASYLLSLFGPDLN---------PSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILT 148 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGT---------CSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred hcccceeEEEeeccccccccchhhhhhhccccccc---------cccchheeeeecccccceEeeechhhhhhhhhhhhh
Confidence 99999999999999999999999999877653110 001114477888899999999999999999999999
Q ss_pred HHHH-HHHHHHHHhhhccccCCC-------CCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHH
Q 040051 235 AINT-VVILFVIIVGFAHADASN-------LKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGS 306 (590)
Q Consensus 235 ~~~i-~~~~~~~i~~~~~~~~~~-------~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~ 306 (590)
.+++ ..++++++.++...+.+. ...+.++++.+.+.++...+|+|.|+|++++++||.|| ||+||++..+
T Consensus 149 ~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~--k~ip~ai~~~ 226 (426)
T PF13520_consen 149 VIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN--KTIPRAIIIS 226 (426)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS--HHHHHHHHHH
T ss_pred hhhhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc--hhheeecccc
Confidence 9999 576677766666543221 12455667777888999999999999999999999777 8999999999
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCCCCc----HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcC
Q 040051 307 MSMITIIYCLMALSLCVMQPYTDIDPNA----AYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAH 382 (590)
Q Consensus 307 ~~~~~~~y~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~ 382 (590)
.+++.++|++..++.....|+++.+.++ +...+.+..++++...++.+..+++.+++.++.+.+.+|++++|+|||
T Consensus 227 ~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~d~ 306 (426)
T PF13520_consen 227 IIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMARDG 306 (426)
T ss_dssp HHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccccc
Confidence 9999999999999999999988765432 466777788878999999999999999999999999999999999999
Q ss_pred CCchhhhccCCCCCCchHHHHHHHHHHHHHHH-H-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 040051 383 MIPPWFALVHPKTGTPINANLLIVLASALIAL-F-----SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITP 452 (590)
Q Consensus 383 ~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~-~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~ 452 (590)
.+|++|+|+| |+++|++++++.++++.++.+ + .+++.+.++.+....+.|.+..++.++.|+|+|+.+|
T Consensus 307 ~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 381 (426)
T PF13520_consen 307 VLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSSVGYLISYILVILAVLFLRRKRPDLKR 381 (426)
T ss_dssp SSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHHHHTHHHHHHHHHHHHHTHHHSCSSGH
T ss_pred chhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Confidence 9999999999 999999999999999966543 2 2678999999999999999999999999988877644
No 34
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.4e-42 Score=367.86 Aligned_cols=379 Identities=31% Similarity=0.485 Sum_probs=324.3
Q ss_pred ccccccccCCHHH-HHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhH
Q 040051 68 SENDMKRCLTWWD-LTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLR 146 (590)
Q Consensus 68 ~~~~l~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~ 146 (590)
++++++|+++.++ ...+..+.++|.|++..++..+.. + +...++|++++++..+.+++++|+++.+|++||.|.|++
T Consensus 6 ~~~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~-~-~~~~~~~li~~~~~~~~a~~~~el~~~~p~~GG~y~~~~ 83 (466)
T COG0531 6 MSSELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGL-A-PAAILAWLIAGIIILFLALSYAELSSAIPSAGGAYAYAK 83 (466)
T ss_pred cchhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHh-c-hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeeeehh
Confidence 4566789999999 888999999999999999988765 4 555555999999999999999999999999999999999
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhh
Q 040051 147 IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKT 226 (590)
Q Consensus 147 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 226 (590)
+.+||..|+.++|.+++++....+......+.++...++... .+ ..+......++++++++.+++|++|+|..
T Consensus 84 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~~~~~~~ln~~G~~~~ 156 (466)
T COG0531 84 RALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG-LL------SIGPLLIILIALALIALLTLLNLRGIKAS 156 (466)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch-hh------cCCchHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 999999999999999999999999999999998888776421 00 00001245788899999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC---CC--CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhh
Q 040051 227 SVLNWIASAINTVVILFVIIVGFAHADASNLKPF---LP--FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPI 301 (590)
Q Consensus 227 ~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~---~~--~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 301 (590)
++++.+..+++++.++++++.++.+.+.++...+ .+ ..+.++..++...+|+|.|+|.+++++||+|||+|++||
T Consensus 157 ~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~ 236 (466)
T COG0531 157 AKINSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPR 236 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccH
Confidence 9999999999999999999888877665432211 11 223457788888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC---cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDIDPN---AAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 378 (590)
+++.+.+.++++|++..++.....|.+++... .|...+.....+.+...++.+..+.+.+++.++...+.+|.+++|
T Consensus 237 aii~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~ 316 (466)
T COG0531 237 AIILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAM 316 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998887655433 688888887777889999999999999999999999999999999
Q ss_pred HhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH-h----hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCc
Q 040051 379 ARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF-S----GLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPR 453 (590)
Q Consensus 379 ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~ 453 (590)
+|||.+|++|+|+|+|+++|+++++++.+++..+.+. . .++.+.++.+...++.|.+.+++.+.+|+|+++.+++
T Consensus 317 ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 396 (466)
T COG0531 317 ARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSLASVAFLIAYLLVALALLVLRRKKPDLKRP 396 (466)
T ss_pred HhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Confidence 9999999999999999999999999999999833333 2 3689999999999999999999999988886655544
Q ss_pred cc
Q 040051 454 KN 455 (590)
Q Consensus 454 ~~ 455 (590)
.+
T Consensus 397 ~~ 398 (466)
T COG0531 397 FR 398 (466)
T ss_pred cc
Confidence 33
No 35
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=100.00 E-value=1.3e-45 Score=394.40 Aligned_cols=360 Identities=27% Similarity=0.422 Sum_probs=306.5
Q ss_pred HHHHHhhhhhcchhhhcchHhHhhccCh-HHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHH
Q 040051 81 LTWFGFGAVIGAGIFVLTGQEAHKHAGP-AIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAG 159 (590)
Q Consensus 81 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~-~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~ 159 (590)
++++++++++|+|+|...+..+.. +|+ +.++++++++++.++++.+++||++++|++||.|.|++|.+||..|+.+||
T Consensus 2 v~~~~ig~~ig~g~f~~~g~~~~~-~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~~Gg~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 2 VFMISIGGIIGTGLFLGSGFAIAA-AGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPSAGGFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred EEEeeHHHHHHHHHHHHHHHHHHh-cccccchhHhHHHHHHHHhhhhhhhhhhhhhccccchhhhhhhccCCcCCceeeH
Confidence 346788999999999999999887 888 589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--hcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 040051 160 NILLESIVGGAAVARAWTSYFTTL--LNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAIN 237 (590)
Q Consensus 160 ~~~l~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~ 237 (590)
.||+.++...+.+....+.+++.+ +...+..| .+..+++.+++++.+.+|++|+|..++++.++..++
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~i~~~~~~~l~~~gv~~~~~~~~~~~~i~ 150 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGLPSTW----------VWGILIAIIFILLITLLNLFGVRVSGKIEFILTIIK 150 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccccccc----------cccchhhhhhhhhhhhhhhhhhhccchHHHHHHHHh
Confidence 999999999999988888777765 22221111 111145778888899999999999999999999999
Q ss_pred HHHHHHHHHhh-hc-cc--cCCCC---------CCCCCCC--------hhhHHHHHHHHHHhhcchhhhhhhhhhccCCC
Q 040051 238 TVVILFVIIVG-FA-HA--DASNL---------KPFLPFG--------SEGIFKAAAVVYFAYGGFDNIATMAEETKNPS 296 (590)
Q Consensus 238 i~~~~~~~i~~-~~-~~--~~~~~---------~~~~~~g--------~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 296 (590)
++.++.+++.+ +. .. ++.+. .+..+++ +.+++.++..++++|.|+|+++.++||+||||
T Consensus 151 ~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~ 230 (478)
T PF00324_consen 151 LIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPR 230 (478)
T ss_pred hhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCch
Confidence 99998888877 21 11 11111 1123334 78899999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCC------cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 297 RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPN------AAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALG 370 (590)
Q Consensus 297 r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 370 (590)
|++|||+..++++++++|++..++....+|+++.... +|+..+.+..+++++..++.+..+.+.+++.++.+++
T Consensus 231 k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~ 310 (478)
T PF00324_consen 231 KTIPRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYA 310 (478)
T ss_pred hhhhhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcc
Confidence 9999999999999999999999999999998886422 4888999999999999999999999999999999999
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 371 NARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFS------GLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 371 ~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
.||++++|||||.+|+++.++|+|+|+|++|++++.+++++..+.. .++.+.++.+...+..|.+.+++.+++|
T Consensus 311 ~sR~l~ama~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~r 390 (478)
T PF00324_consen 311 ASRLLYAMARDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNISTISNLIVYILINISYIRFR 390 (478)
T ss_pred cceeehhhhhhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhhhhhhhhhHHHhhhhhhhhhh
Confidence 9999999999999996666667799999999999999987766542 3567788889999999999999999888
Q ss_pred hhccCCC
Q 040051 445 YYVREIT 451 (590)
Q Consensus 445 ~~~~~~~ 451 (590)
++.+.++
T Consensus 391 ~~~~~~~ 397 (478)
T PF00324_consen 391 KKFKYRG 397 (478)
T ss_pred hhhcccc
Confidence 7744333
No 36
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=100.00 E-value=1.9e-41 Score=362.86 Aligned_cols=405 Identities=17% Similarity=0.237 Sum_probs=286.0
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHH-HHHHHHHHHHhhhcccc-cccchhhhHHHh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVS-AMLSVFCYTEFAIEIPV-AGGSFAYLRIEL 149 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~~~~P~-~Gg~y~~~~~~~ 149 (590)
++|++|++++.++.++.++|.+.. +..... +|+..++.+++++++ .++.+++++|+++++|+ +||.|+|+++.+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~~~---~~~~~~-~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~ 80 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFANS---PRAFYL-MGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSV 80 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCCch---HHHHHH-cChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHc
Confidence 478899999999999999986532 322334 788877777777766 67899999999999997 899999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhcCC-CCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTS-YFTTLLNRE-PNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
||.+||.++|.+|..+............. .....++.. ...|+.. +.. .......++++.+++.+++|++|+|..+
T Consensus 81 G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~a~~~~~~~t~vn~~g~~~~~ 158 (496)
T PRK15238 81 GPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGKDTTQTWHFL-GLN-STQVVGILAVIWMILVTFVASKGINKIA 158 (496)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhhhhh-ccc-chHHHHHHHHHHHHHHHHHHccchHHHH
Confidence 99999999999888877655333221111 111112211 1111100 000 0011224555666688999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH----hhhccc-cCC---CCCCCC---CCC---hhhHHHHHHHHHHhhcchhhhhhhhhhcc
Q 040051 228 VLNWIASAINTVVILFVII----VGFAHA-DAS---NLKPFL---PFG---SEGIFKAAAVVYFAYGGFDNIATMAEETK 293 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i----~~~~~~-~~~---~~~~~~---~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k 293 (590)
+++++.+..++...+++++ ..+... +.. +..++. +.+ ..+++.++..+.|+|.|+|..++++||+|
T Consensus 159 ~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~~ 238 (496)
T PRK15238 159 KVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGGLVDKTE 238 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHHHHHhcc
Confidence 9999888777654322221 111111 111 111111 111 13567778889999999999999999999
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC-------CcHHHHHHHHhC-----------------hhHHH
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP-------NAAYSVAFQRVG-----------------MKWAK 349 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~-----------------~~~~~ 349 (590)
||+|++|||+..+..+++++|++..+.+....|.++... +.|+. +.+..+ +.++.
T Consensus 239 ~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~g~~~~~~~~~g~~~~ 317 (496)
T PRK15238 239 NPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYV-LMNNLGYTLGHALGLSPAASLTLGVWFA 317 (496)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHH-HHHHHHHHHHHHhccchhhhhhhhHHHH
Confidence 999999999999999999999999888877777666532 12322 122211 24555
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHh---------hHHH
Q 040051 350 YLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFS---------GLDI 420 (590)
Q Consensus 350 ~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~---------~~~~ 420 (590)
.++.+..+.+.+++.++..++.+|.+++.+|||.+||+|+|+| |+|+|++|+++++++..++.+.. .++.
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~ 396 (496)
T PRK15238 318 RITGLSMFLAYTGAFFTLSYSPLKQLIEGTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGDAASAFFNI 396 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHhhCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCchhHHHHHHH
Confidence 5778888999999999999999999999999999999999999 89999999999988877554331 1688
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHH
Q 040051 421 LSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLG 500 (590)
Q Consensus 421 l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (590)
+.++.+...++.|++.+++++++|+ +|+.+|+++.+ ..+.++ +.++++.++++++..+
T Consensus 397 l~~l~~~~~li~y~~~~~a~i~~r~-~~~~~r~~~~~--------------------~~~~~~-~~~~~~~~~~~~~~~~ 454 (496)
T PRK15238 397 LTLMANVSMTLPYLFLAGAFPFFKK-KKDIDRPFVVF--------------------KTKKST-LIATIVVVLVVGFANV 454 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCceec--------------------CCccee-hhHHHHHHHHHHHHHH
Confidence 9999999999999999999999876 46666665531 111122 2555666666666666
Q ss_pred HHhhcc
Q 040051 501 ISVLLP 506 (590)
Q Consensus 501 ~~~~~~ 506 (590)
+.++++
T Consensus 455 ~~~~~p 460 (496)
T PRK15238 455 FTIIQP 460 (496)
T ss_pred HheeCC
Confidence 665555
No 37
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.3e-31 Score=268.89 Aligned_cols=401 Identities=16% Similarity=0.178 Sum_probs=316.4
Q ss_pred cccCCHHH-HHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccc-ccccchhhhHHHh
Q 040051 73 KRCLTWWD-LTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIP-VAGGSFAYLRIEL 149 (590)
Q Consensus 73 ~r~l~~~~-~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P-~~Gg~y~~~~~~~ 149 (590)
+-++|... ++.-++-++.|.-+|....+++.. +|.. .++..++.++++++++.+++.++++-- .+||.|..++|.+
T Consensus 111 a~~mGt~mGVyLPclQnIlGVilFiRLtWvVG~-AGv~q~fllv~iCC~cTmLTaISmSAIATNGVVpaGGsYfmISRsL 189 (1075)
T KOG2082|consen 111 AARMGTLMGVYLPCLQNILGVILFIRLTWVVGM-AGVGQGFLLVFICCLCTMLTAISMSAIATNGVVPAGGSYFMISRSL 189 (1075)
T ss_pred ccccceeeeeeHHHHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCeeEEEeccc
Confidence 33455544 445688999999999999999887 8876 788888999999999999999999966 7999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc---cccccccccCchhHHHHHHHHHHHHHHhhchhhh
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLR---IHTNLREGYNLLDPIAVAVLATAATIASISTRKT 226 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~ 226 (590)
||.+|-.+|.+++++..+..+.+.++..+.+..+.-.....+. ...+.....+...+.+.+++++..++...|+|..
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P~aaIf~~~~a~~~~~am~nnlRvYGT~~Li~m~lIVf~GVK~V 269 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFPAAAIFGAEDAHDEAAAMLNNLRVYGTVFLILMALIVFVGVKFV 269 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHccHhhhcCccccccchhhhhcceehHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988764322110000 0011223334456888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccc------------------------------CCC--------------------
Q 040051 227 SVLNWIASAINTVVILFVIIVGFAHAD------------------------------ASN-------------------- 256 (590)
Q Consensus 227 ~~~~~~~~~~~i~~~~~~~i~~~~~~~------------------------------~~~-------------------- 256 (590)
.++..++..+.++.++.+.+.++-... ..|
T Consensus 270 nk~A~vfL~CVILSIlaiyaG~i~~~~~~~~~~vC~lgnr~L~~~~~d~c~k~~~~~~~~~~~~L~~~fC~~~~~~~~c~ 349 (1075)
T KOG2082|consen 270 NKFAPVFLACVILSILAIYAGGIKSIFDPPGFPVCMLGNRLLSSSIFDNCSKTETVDNDNVTSFLWGLFCNSNNDSATCD 349 (1075)
T ss_pred HHhhHHHHHHHHHHHHHHHHhhhhhccCCCCCeeEEecceeccccccccchhhhccccccHHHHHHHhhCCCCCCCcccc
Confidence 999999999988888877766543100 001
Q ss_pred -------CC---------------CC----------CCCC-------------------hhhHHHHHHHHHHhhcchhhh
Q 040051 257 -------LK---------------PF----------LPFG-------------------SEGIFKAAAVVYFAYGGFDNI 285 (590)
Q Consensus 257 -------~~---------------~~----------~~~g-------------------~~~~~~~~~~~~~~~~G~e~~ 285 (590)
.+ ++ .+.| -..+...+.+-|.+.+|+-+.
T Consensus 350 ~y~~~nnvt~i~GipG~a~g~~~eNlws~Ylekg~~v~~g~~~~~~~~~~~~~~V~~Di~tSFtlLvgIfFPsVTGImaG 429 (1075)
T KOG2082|consen 350 EYFSKNNVTEIQGIPGLASGVFKENLWSAYLEKGEIVEYGVPSADIADSSGHPYVVQDITTSFTLLVGIFFPSVTGIMAG 429 (1075)
T ss_pred cccccccceeecCCcchhhhhhhhhhhHhhhcccccccCCCCCCCcccccCCCceeecchhhHHHHHHhhccccceeeec
Confidence 00 00 0000 011333345556789999999
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHH-----HhChhHHHHHHHHHHHHHH
Q 040051 286 ATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQ-----RVGMKWAKYLVALGALKGM 360 (590)
Q Consensus 286 ~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~~~~~~ 360 (590)
++.+++.|||+|.+|.+.+.+++.+..+|+...+.+.+....-.+.+. +-+... ....-+.++++.++.++|.
T Consensus 430 SNrSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDK--fG~sv~g~lVva~laWPsPwVi~IGsFlST 507 (1075)
T KOG2082|consen 430 SNRSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDK--FGQSVGGNLVVATLAWPSPWVIVIGSFLST 507 (1075)
T ss_pred CCCCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhh--hhhhccCcEEEEEecCCCceeeehhHHHHH
Confidence 999999999999999999999999999999988888776663333211 000000 0001123578889999999
Q ss_pred HHHHHHhhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040051 361 TTVLLVGALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAV 438 (590)
Q Consensus 361 ~~~~~~~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 438 (590)
+++.+.++.+++|++++.|||+.+| +.|+|.+ +++.|.+|++++.+++-.-+++++.+.+..+.++.++.+|.++++
T Consensus 508 ~GAgLQsLtgAPRLLQAIAkD~IiPfL~~F~~~~-~ngEPt~aLlLT~~Ice~gILigslD~iApilsmFFLMCY~fVNL 586 (1075)
T KOG2082|consen 508 CGAGLQSLTGAPRLLQAIAKDDIIPFLAPFGHGK-ANGEPTWALLLTAIICECGILIGSLDLIAPILSMFFLMCYLFVNL 586 (1075)
T ss_pred hHHHHhhhcCcHHHHHHHhhcCccchhhhhcccc-CCCCccHHHHHHHHHHHhhheeechhHHHHHHHHHHHHHHHHHhH
Confidence 9999999999999999999999999 9999987 899999999999999999999999999999999999999999999
Q ss_pred HHHHHh-hhccCCCCccchhHH-HHHHHHHHHHHhHHhhhc
Q 040051 439 ALLVRR-YYVREITPRKNLLML-VIFLLIIIASSAGISAYW 477 (590)
Q Consensus 439 ~~~~~r-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 477 (590)
++.+.. .+-|++++++|+++| +.+++.-+|++++|..-|
T Consensus 587 aCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SW 627 (1075)
T KOG2082|consen 587 ACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSW 627 (1075)
T ss_pred HHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 987644 467899999998887 588889999999998887
No 38
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.97 E-value=7.1e-31 Score=266.12 Aligned_cols=396 Identities=15% Similarity=0.168 Sum_probs=321.3
Q ss_pred cCCHHHHHHH-HhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccc-ccccchhhhHHHhch
Q 040051 75 CLTWWDLTWF-GFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIP-VAGGSFAYLRIELGD 151 (590)
Q Consensus 75 ~l~~~~~~~~-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P-~~Gg~y~~~~~~~g~ 151 (590)
++|.++.++. ..-+|...=+|...|.++.+ +|.. .+.-++++-.+.+++.++.+.++++-- +.||.|..++|.+||
T Consensus 66 kLgTf~GvfvPtaLsmfSiLlFLR~gfIvG~-aGll~Tll~lliaY~I~llTvlSicAIsTNGaV~GGGaYymISRsLGp 144 (945)
T KOG1288|consen 66 KLGTFEGVFVPTALSMFSILLFLRFGFIVGQ-AGLLKTLLMLLIAYAILLLTVLSICAISTNGAVRGGGAYYMISRSLGP 144 (945)
T ss_pred cccceeeEechhHHHHHHHHHHHHHhhhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhccCCceecCceEEEEEcccCc
Confidence 7888877654 33355566689999999988 8876 788888888999999999999999987 889999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
++|--.|.+++++++..++.++.++.+-+.+.++.+...-.....+|.+.+|..+.+.++..+...+++.|...++|..+
T Consensus 145 EfGGSIGllFf~anV~~~am~isG~vE~il~nfG~~a~g~sg~~~lP~g~ww~fly~t~vl~l~~~vc~lGsalfAkas~ 224 (945)
T KOG1288|consen 145 EFGGSIGLLFFVANVFNCAMNISGFVEPILDNFGKEAQGASGSQFLPDGYWWRFLYTTLVLALCLIVCLLGSALFAKASN 224 (945)
T ss_pred ccCCeeeehhhHHHHhcchhhhhhhhHHHHHhcCccccCCcccccCCCCcchhhHHHHHHHHHHHHHHHhhHHHHHhhhh
Confidence 99999999999999999999999999999999986543322224678888888889999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCC------------------CCC-----------------CCChhhHHHHHHHHH
Q 040051 232 IASAINTVVILFVIIVGFAHADASNLK------------------PFL-----------------PFGSEGIFKAAAVVY 276 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~~~~~~------------------~~~-----------------~~g~~~~~~~~~~~~ 276 (590)
+..++..+.+....+..++.++.++.. ++. ..+...+-..+.+.+
T Consensus 225 i~f~~is~s~~si~iS~ifvgp~~~~ip~~~~p~~sn~t~~~~yTG~~~sTl~dNL~~~yt~dyt~~~~~~F~~~FgV~F 304 (945)
T KOG1288|consen 225 ILFVVISVSLFSIPISFIFVGPFKDPIPVPGDPILSNTTLFVHYTGLSWSTLMDNLGSHYTEDYTGGGYEDFASTFGVFF 304 (945)
T ss_pred hhhhHHHHHHhhhhheeEEeccccCCCCCCCCccccCcceeeeecCccHHHHhhhhhhhhcccccCCCceehhhhheeee
Confidence 888776666655555544433322211 100 011223445566677
Q ss_pred HhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHH
Q 040051 277 FAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGA 356 (590)
Q Consensus 277 ~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (590)
-..+|.-+.++|++|.|+|+|.+||+.+.++..+.++|+++.+.+....|...+..+-.+ +..+ ....+++.+++
T Consensus 305 ~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v---~~~i--sl~p~fi~iGi 379 (945)
T KOG1288|consen 305 PGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDV---MMHI--SLHPPFILIGI 379 (945)
T ss_pred ccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhh---eeec--cccchHHHHHH
Confidence 788999999999999999999999999999999999999999999999998776654322 2211 12235677888
Q ss_pred HHHHHHHHHHhhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040051 357 LKGMTTVLLVGALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFM 434 (590)
Q Consensus 357 ~~~~~~~~~~~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 434 (590)
+.+.+.+.++.+.++||++.++|||+.+| -.|+|...+.+.|+.|+.++..++.+..+.+++|.+..+.++.++++|.
T Consensus 380 ~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g~~N~iA~~it~~FLlty~ 459 (945)
T KOG1288|consen 380 LSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWGDINKIASMITMTFLLTYG 459 (945)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 88888899999999999999999999999 6788887788999999999999999988899999999999999999999
Q ss_pred HHHHHHHHHhhh-ccCCCCccchhHH-HHHHHHHHHHHhHHhhh
Q 040051 435 MMAVALLVRRYY-VREITPRKNLLML-VIFLLIIIASSAGISAY 476 (590)
Q Consensus 435 ~~~~~~~~~r~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 476 (590)
.++++++.++.. -|+.++.+|+..| .+.++.+.++.+++.+-
T Consensus 460 ~vNLacl~LeissAPNFRPtFkyF~w~TclvG~l~s~~mMfvVd 503 (945)
T KOG1288|consen 460 AVNLACLLLEISSAPNFRPTFKYFNWHTCLVGVLLSLGMMFVVD 503 (945)
T ss_pred HHHHHHHHhhhccCCCCCchhhhhhHHHHHHHHHHHHhhhheec
Confidence 999999988874 5888888887765 45666666666666554
No 39
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.97 E-value=3.1e-28 Score=253.00 Aligned_cols=341 Identities=16% Similarity=0.123 Sum_probs=270.1
Q ss_pred HHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHH
Q 040051 83 WFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNIL 162 (590)
Q Consensus 83 ~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 162 (590)
++.+++++|+|++..|+..... +++.+++..+++++.+...+++++|+++++|++||.|+|+++.+||..|++.+|.++
T Consensus 4 ~lv~gt~IGaGIl~lP~~~a~~-g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~~~~~~~~~~~~~G~~~g~~~~~~~~ 82 (381)
T TIGR00837 4 LIIAGTTIGAGMLALPTSTAGA-WFIWTLLLLILLWFLMLHSGLLLLEVYLTYPGGASFNTIAKDLLGKTGNIIAGLSLL 82 (381)
T ss_pred EEeehhhHhHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCHHHHHHHHHHHH
Confidence 4567899999999999987654 555677778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHH
Q 040051 163 LESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVIL 242 (590)
Q Consensus 163 l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~ 242 (590)
+.......++....++++..+++.... .+.+ .....+++.+++..+++.|.|..++++.+++..+++.++
T Consensus 83 ~~~~~~~~ay~~~~~~~l~~~~~~~~~-----~~~~-----~~~~~~~~~~v~~~l~~~G~~~~~~v~~i~~~~~l~~l~ 152 (381)
T TIGR00837 83 FVLYILTYAYISGGGSILSRLIGEYFG-----FPWS-----ARAIVLIFTVLFGSFVWLSTSAVDRITRVLIFGKIIAFA 152 (381)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHhcC-----CCcc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHH
Confidence 998888888888888888877653110 0001 235666777788899999999999999999999999988
Q ss_pred HHHHhhhccccCCCCCCCC--CCChhhHHHHHHHHHHhhcchh-hhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHH
Q 040051 243 FVIIVGFAHADASNLKPFL--PFGSEGIFKAAAVVYFAYGGFD-NIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMAL 319 (590)
Q Consensus 243 ~~~i~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~G~e-~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~ 319 (590)
++++.++.+.+.+|+.+.. +.++.++..++...+++| |+| ......+|.|+++|++||+++.+..+++++|++...
T Consensus 153 ~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~f-g~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~ 231 (381)
T TIGR00837 153 LVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSF-GFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQL 231 (381)
T ss_pred HHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHH-HcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888887776666554431 235667777888888888 564 688889999877999999999999999999999999
Q ss_pred HHhhcccCCCCCC-------CcHHHHHHHH-hChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhcc
Q 040051 320 SLCVMQPYTDIDP-------NAAYSVAFQR-VGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALV 391 (590)
Q Consensus 320 ~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~ 391 (590)
+..+..|.+++.+ .++..++++. .+.++...++.+..++++.++.++...+.++. +++.|++.
T Consensus 232 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~---------l~~~~~~~ 302 (381)
T TIGR00837 232 ATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDY---------LADLFKFD 302 (381)
T ss_pred HHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHhCCC
Confidence 9999999888641 1455666664 56777888999999999999998887776644 44455554
Q ss_pred CCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040051 392 HPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRY 445 (590)
Q Consensus 392 ~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~ 445 (590)
+++++ |..+.+++.+...++..+.....+..+...+....++...+..+..++
T Consensus 303 ~~~~~-~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G~~~~~~~~~~p~l~~~~ 355 (381)
T TIGR00837 303 DSKKG-RFKTGLLTFLPPLVFALFYPEGFLYAIGYAGLAATIWAVIIPALLAWK 355 (381)
T ss_pred cccCC-CchhhhhhHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44434 678888888888888777666667777777777777777777665533
No 40
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1e-24 Score=220.45 Aligned_cols=392 Identities=16% Similarity=0.211 Sum_probs=319.8
Q ss_pred cccCCHHHHHHH-HhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccc-ccccchhhhHHHh
Q 040051 73 KRCLTWWDLTWF-GFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIP-VAGGSFAYLRIEL 149 (590)
Q Consensus 73 ~r~l~~~~~~~~-~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P-~~Gg~y~~~~~~~ 149 (590)
+-++|+|+.++. ++-++.|.-+|...+++.++ +|.+ .++...++.++++.++++..-++++-. ++||.|..++|.+
T Consensus 27 ~v~fg~~~gv~~~cmlni~gv~lflrl~wivgq-agi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg~yflis~sl 105 (643)
T KOG2083|consen 27 PVLFGWWDGVFVRCMLNIFGVILFLRLGWIVGQ-AGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGGVYFLISRSL 105 (643)
T ss_pred ceEEeeeehhhhhhhHHHHHHHHhhhhhheeec-chhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCcEEEEEEecc
Confidence 456999998877 66788899999999999988 9986 888888899999999999999999977 8999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
|+..|-..|.+|.++....++.+..++++.+..++..... +. .+.++.+.+.++..+|..|+|+..|+
T Consensus 106 g~efggsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~-~~-----------i~gi~~vt~~ill~i~~ag~~w~~k~ 173 (643)
T KOG2083|consen 106 GPEFGGSIGIIYAFANAVATAMYVVGFAESVAHLFETESK-EM-----------IDGIGSVTVLILLAINVAGVEWEAKL 173 (643)
T ss_pred cccccchhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccH-HH-----------hcchhHHHHHHHHHhhhccchhHHHH
Confidence 9999999999999999999999999999999999876532 11 33578888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCC-----C-----CC-CCCCC--ChhhHHHHHHHHHHhhcchhhhhhhhhhccCCC
Q 040051 230 NWIASAINTVVILFVIIVGFAHADAS-----N-----LK-PFLPF--GSEGIFKAAAVVYFAYGGFDNIATMAEETKNPS 296 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~~~~-----~-----~~-~~~~~--g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~ 296 (590)
|.++..+.++.+.-+++..+...+.. + +. ++.|. .-..++..+...+.+.+|.-+.++++++.|+|+
T Consensus 174 q~~ll~il~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq 253 (643)
T KOG2083|consen 174 QIVLLLILLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQ 253 (643)
T ss_pred HHHHHHHHHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCch
Confidence 99999998888888888776643310 0 00 11111 012566667777889999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-----CCc----HHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHH
Q 040051 297 RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID-----PNA----AYSVAFQRVG-MKWAKYLVALGALKGMTTVLLV 366 (590)
Q Consensus 297 r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-----~~~----~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 366 (590)
+++|++.+.++.....+|+.+..-.....-.+... .++ .+.+-++... ..........+...+.+++..+
T Consensus 254 ~~IP~GaL~Ai~vst~~yl~~i~~~Ga~~~r~~~~~~~~~~~~~c~~gl~~~~qv~smvS~~~Pl~~AGi~~a~LSsals 333 (643)
T KOG2083|consen 254 KAIPLGALLAIGVSTLLYLIFIADLGATPVRDALENWNDTSTKSCPIGLTNYLQVMSMVSTFGPLITAGILAAELSSALS 333 (643)
T ss_pred hhcccchhhhhhhhhhhhhhhhhhcccHHHHHHhccchhhccCCCccchHHHHHHHHhHhhcccchhhHHHHHHHHHHHH
Confidence 99999999999999999988777665544333221 111 2223332111 1222346677788888888999
Q ss_pred hhhchhHHHHHHHhcCCCc--hhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040051 367 GALGNARYTTHIARAHMIP--PWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRR 444 (590)
Q Consensus 367 ~~~~~sR~l~~~ard~~lP--~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r 444 (590)
.+.+++++++++++|+..| .+|+|-.++++.|.++..++...+..+..+++.+.+..+.+...+.+|.+++.+++..+
T Consensus 334 slVsap~V~QaL~kd~~yp~i~~f~KgyGkn~~Plrg~~l~~~~av~fi~igeln~iapiis~FfL~syAlinf~~f~aS 413 (643)
T KOG2083|consen 334 SLVSAPKVLQALCKDSLYPSILFFAKGYGKNKEPLRGYLLTFLTAVSFIAIGELNIIAPIISNFFLLSYALINFSCFHAS 413 (643)
T ss_pred HHHhhhHHHHHHHhcCCCccHHHHHccCCccccchHHHHHHHHhHheeEEecccceeccchhhhhhhhhhccchhhhhhh
Confidence 9999999999999999999 78899999999999999999999988888999999999999999999999999999877
Q ss_pred hhccCCCCc-cchh-HHHHHHHHHHHHHhHHhhhc
Q 040051 445 YYVREITPR-KNLL-MLVIFLLIIIASSAGISAYW 477 (590)
Q Consensus 445 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~ 477 (590)
...++..|+ ++.+ +|...++.+.|..+++.+-|
T Consensus 414 l~~s~~wRp~f~~yn~wVSllGalKOG~ImFli~w 448 (643)
T KOG2083|consen 414 LAISEGWRPSFKFYNAWVSLLGALLCLAIMFLISW 448 (643)
T ss_pred hccccccCchhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555444 4433 59999999999999999988
No 41
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.92 E-value=3.7e-22 Score=205.74 Aligned_cols=286 Identities=15% Similarity=0.133 Sum_probs=234.1
Q ss_pred cCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhH
Q 040051 75 CLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAA 154 (590)
Q Consensus 75 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g 154 (590)
++|.+|.+++.++.++|+|++..|+..+.. +|+.++++++++++..++.+++++|+++++|+. +.++|.++.+||..|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~-a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~~-~~~~~~~~~~Gk~~g 79 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQS-AGQDGWISIILGGLIIIFLLCLMIKIMSKFPEK-NFSEILSKYLGKILG 79 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhc-cCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhhHHHH
Confidence 689999999999999999999999988765 888899999999999999999999999999977 699999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 040051 155 FITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIAS 234 (590)
Q Consensus 155 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~ 234 (590)
++.+|.+++......+.....++++++.....+.+ .....+.+++++...+..|.|..+|++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~tp--------------~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~ 145 (359)
T TIGR00912 80 RLLSILFILYFFLIAAYLIRIFADFIKTYLLPRTP--------------IIVIIILIIIVSIYIVRKGIEVLLRTAEILL 145 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--------------HHHHHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence 99999999888888888888888888765533222 3366777778888899999999999999999
Q ss_pred HHHHHH-HHHHHHhhhccccCCCCCCCCCCChhhHHHHHH-HHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHH
Q 040051 235 AINTVV-ILFVIIVGFAHADASNLKPFLPFGSEGIFKAAA-VVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITI 312 (590)
Q Consensus 235 ~~~i~~-~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~ 312 (590)
.+++.. ++++........+.+|..|..++|+.+.+.+.. ...++|.|+|......+|+||| |+.||++..+..++++
T Consensus 146 ~~~i~~~~~il~~~~~~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~-~~~~k~~~~~~~~~~~ 224 (359)
T TIGR00912 146 IIFLILFILVLILLAPKLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKK-KKIKKSIIKAIIIGVL 224 (359)
T ss_pred HHHHHHHHHHHHHHhcccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCCh-hhhHHHHHHHHHHHHH
Confidence 888776 344444444445677778888888888888776 7889999999999999999996 5799999999999999
Q ss_pred HHHHHHHHHhhcccCCCCCC-CcHHHHHHHHhChh-H---HHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051 313 IYCLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMK-W---AKYLVALGALKGMTTVLLVGALGNARYTTH 377 (590)
Q Consensus 313 ~y~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~---~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 377 (590)
+|.+..++.....++++.+. ..|..+..+....+ . ...++....+.+.+.....+++..++.+..
T Consensus 225 ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~ 294 (359)
T TIGR00912 225 LYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSK 294 (359)
T ss_pred HHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887764 45888887755433 2 223444444555666666667777766543
No 42
>PHA02764 hypothetical protein; Provisional
Probab=99.86 E-value=7.5e-20 Score=171.28 Aligned_cols=277 Identities=13% Similarity=0.144 Sum_probs=181.8
Q ss_pred cccccccccCCHHHHHHHHhhhhh-cchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhh
Q 040051 67 QSENDMKRCLTWWDLTWFGFGAVI-GAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYL 145 (590)
Q Consensus 67 ~~~~~l~r~l~~~~~~~~~~~~~i-g~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~ 145 (590)
|+.++|-|+.+.+|.++..++.+- |.++ ..+........|...+++|+++++++++.+++|+|+++++|++||.|.|.
T Consensus 5 ReSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPgAL~YAELGSAmPrAGGdYVYI 83 (399)
T PHA02764 5 RKSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPLLLMYYKLTTKFPLNGGDYAYI 83 (399)
T ss_pred hhcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCceEEEh
Confidence 377899999999999999999873 3322 21222222224666889999999999999999999999999999999999
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhch
Q 040051 146 RIELGDFAAFITAGNILLESIVGGAAVARAWT-S-YFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIST 223 (590)
Q Consensus 146 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 223 (590)
+|++||.+|++.||..|+.+..+.++..-.-. + .++..+. . ..-..-......+...|.
T Consensus 84 SRAFGP~~GFLvG~a~WLtl~~G~Pal~~l~~~~~~i~~~~~------------------~-f~~~~s~~~i~~~i~~~~ 144 (399)
T PHA02764 84 RTAFSSKFYTIFGISLWLTYVLSQPILGDLVLLNFNIQNQFE------------------Q-FLIVESLFPIVLLIIANK 144 (399)
T ss_pred HHhhCccHHHHHHHHHHHHHHhhcchhhheeeeeeeeHHHHH------------------H-HHHHHHHHHHHHHHHccc
Confidence 99999999999999999999888776432111 0 0000000 0 111111222333344567
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCCh-hhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhH
Q 040051 224 RKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGS-EGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIG 302 (590)
Q Consensus 224 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a 302 (590)
|...|...++.....+ +..+...+.-|+.. .+... .....+.....-.|.=.|+....++|.||-+|....+
T Consensus 145 ~~~~~~v~il~~a~~i------~aif~~~~s~n~~~-~~f~~snt~~~a~~~~l~~~~fi~a~~y~~~ei~n~~k~~~~g 217 (399)
T PHA02764 145 KIYAKIVDILAIAQII------IAIFIAFKSFNFQY-QNFTISNTLLSALLFDLSAFIFINAISYIAGEIKNIKKSSMIG 217 (399)
T ss_pred HHHHHHHHHHHHHHHH------HHHHhhccceeEEE-cceeehHHHHHHHHHHHHHHHHhccHHHHHHHhhcchhhhhhh
Confidence 7777766664443332 22222222223221 11111 2345556666677778899999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcC
Q 040051 303 LLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAH 382 (590)
Q Consensus 303 ~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~ 382 (590)
...+...+.++-+..+. . + . .+..+.+....++-.....--.||+.++|+-|+
T Consensus 218 yf~s~~~~~~~~ii~sy------------~-n-~-------------~il~~~~~~w~~~y~~~~~~~~srli~~~~fd~ 270 (399)
T PHA02764 218 YFVSYGIVAILSIIDSY------------S-N-L-------------NILFALMPIWFFSYMPIANKIQSRLIQTMSFDK 270 (399)
T ss_pred hHHHHHHHHHHHHHHhh------------h-h-H-------------HHHHHHHHHHHHhheeeecchHHHHHHHHHhhh
Confidence 88777776655444331 0 0 1 112222334444444455566899999999999
Q ss_pred CCchhhhccCCCCCCch
Q 040051 383 MIPPWFALVHPKTGTPI 399 (590)
Q Consensus 383 ~lP~~f~~~~~~~~~P~ 399 (590)
.+|+.|+|.+| ++|+
T Consensus 271 ~lpe~f~k~~~--nv~~ 285 (399)
T PHA02764 271 VLPEKFSKINP--NVLL 285 (399)
T ss_pred hchHHHhccCC--Ccee
Confidence 99999999983 7887
No 43
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=99.86 E-value=2.1e-18 Score=174.49 Aligned_cols=336 Identities=14% Similarity=0.147 Sum_probs=251.6
Q ss_pred hhhhhcchhhhcchHhHhhccC-h-H-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHH
Q 040051 86 FGAVIGAGIFVLTGQEAHKHAG-P-A-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNIL 162 (590)
Q Consensus 86 ~~~~ig~gi~~~~~~~~~~~~G-~-~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~ 162 (590)
++.-+|+|.+..|+....+ +| . . +.++|+++++...+.+++ ..|++||.|++..+.+||..|++.+|..+
T Consensus 5 FamffGAGNlIfPp~lG~~-aG~~~~~a~lgf~ltgV~lpllgl~------av~~~gG~~~~l~~~~g~~f~~lf~~~~~ 77 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLA-AGEHVWTAALGFLLTGVGLPLLGLI------ALALVGGGYDSLSARIGKVFGILFTVILY 77 (378)
T ss_pred HHHHHhhhHHhhhHHHHHH-hCccHHHHHHHHHHHHHHHHHHHHh------eeeecCCCHHHHHHHhChHHHHHHHHHHH
Confidence 4444789999999988777 55 3 3 788999999998888877 88999999999999999999999999776
Q ss_pred HHHH-HH----HHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHH
Q 040051 163 LESI-VG----GAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAIN 237 (590)
Q Consensus 163 l~~~-~~----~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~ 237 (590)
+..- .. .++.++..+ +..+++..... ....+..+++..+..++++.+.|...+++++++-++
T Consensus 78 l~iGP~~aiPRtaa~s~e~~--i~p~~~~~~~~-----------~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~l 144 (378)
T TIGR00796 78 LTIGPLFAIPRTATVSFEMG--IAPLLHSPTSL-----------LALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPAL 144 (378)
T ss_pred HHHHhchhhhHHHHHHHHHH--HHhccCcccch-----------HHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHH
Confidence 5442 22 233333322 44444321100 012345666667777799999999999999999999
Q ss_pred HHHHHHHHHhhhccccCCCCCCCCCCCh-hhHHHHHHHHHHhhc-------chhhhhhhhh-hccCCCCchhhHHHHHH-
Q 040051 238 TVVILFVIIVGFAHADASNLKPFLPFGS-EGIFKAAAVVYFAYG-------GFDNIATMAE-ETKNPSRDIPIGLLGSM- 307 (590)
Q Consensus 238 i~~~~~~~i~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~-------G~e~~~~~a~-E~k~p~r~~p~a~~~~~- 307 (590)
++.++++++.++.+...+...+..+..- ..+..++.-..++++ |+-...++.+ |.|||+|+.|+++..++
T Consensus 145 Li~l~~lii~g~~~p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~G~i 224 (378)
T TIGR00796 145 LVTLLALIIKALLWPAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKAGLI 224 (378)
T ss_pred HHHHHHHHHHHHHcCCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999987643322111111111 347777888888888 9988888888 99999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC----CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCC
Q 040051 308 SMITIIYCLMALSLCVMQPYTDID----PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHM 383 (590)
Q Consensus 308 ~~~~~~y~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~ 383 (590)
..+.+.|+...++..+..+.++.. .++...++.+..-++.+..++.+.+.++++++.++...+.++
T Consensus 225 a~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~---------- 294 (378)
T TIGR00796 225 AAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSE---------- 294 (378)
T ss_pred HHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 777778888888887777755443 234666777777789999999999999999999988777444
Q ss_pred CchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhccCCCCccch
Q 040051 384 IPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLV--RRYYVREITPRKNL 456 (590)
Q Consensus 384 lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~ 456 (590)
+|+|.++| +|+++.++...+...+.....++.+.++..-...+.|-+.....+. +|++.|+.+++.|.
T Consensus 295 ---~f~~~~~k--~~y~~~v~~~~l~s~~ia~~Gl~~Ii~~~~PvL~~~YP~~i~lill~ll~~~~~~~~~~y~~ 364 (378)
T TIGR00796 295 ---YFHKLVPK--LSYKTWVIVFTLFSFIVANLGLTQIISISIPVLMIIYPLAIVLILLSFLRKLWDSKRAVYQI 364 (378)
T ss_pred ---HHHHhcCC--CCHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeeh
Confidence 45677654 9999988888777777777789999998888788888666665555 67777766666663
No 44
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.82 E-value=1.2e-16 Score=164.71 Aligned_cols=291 Identities=16% Similarity=0.147 Sum_probs=241.3
Q ss_pred ccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchh
Q 040051 74 RCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDF 152 (590)
Q Consensus 74 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~ 152 (590)
|+-+.++..++.+|+.+|.|++..|-.... +|.. ..+..+++..+....++.++|...+.|+..+.-..+++.+||.
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~--~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~ 78 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAG--AGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKK 78 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHh--CchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChH
Confidence 345688899999999999999999987643 6654 7888899999999999999999999999889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-ccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 153 AAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPN-SLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 153 ~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
++++.+..|++.......++..+.++.+.++++.... ++. .....+++.+++..+.+.|.|...|++.
T Consensus 79 g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~-----------~~~~~~~f~~i~~~iv~~g~~~v~~~n~ 147 (394)
T PF03222_consen 79 GGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLS-----------PWLSSLLFTIIFGGIVYFGTKAVDRINR 147 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCc-----------HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999888888889999999999988865321 111 3356666777778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccccCCCCCCC--CCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHH
Q 040051 232 IASAINTVVILFVIIVGFAHADASNLKPF--LPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSM 309 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~ 309 (590)
.+...+++.++.+++.++.+.+.++.... .+..+...+.++...+++|.-...++.+....++-+|+++|+++.+..+
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 99999999999999999888887765541 2345677888999999999999999999999997778999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCC----CC---cHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051 310 ITIIYCLMALSLCVMQPYTDID----PN---AAYSVAFQ-RVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTH 377 (590)
Q Consensus 310 ~~~~y~l~~~~~~~~~~~~~~~----~~---~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 377 (590)
..++|++..+++.+.+|.++.. ++ ++.....+ ..++++...+..+...++..+|..+...+..+.+..
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d 303 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLAD 303 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888887642 22 23444444 456788888889999999999988888887777643
No 45
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.79 E-value=1.2e-16 Score=164.03 Aligned_cols=287 Identities=15% Similarity=0.119 Sum_probs=219.2
Q ss_pred HHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHH----HHHhhhcccc-cccchhhhHHHhchhhH
Q 040051 80 DLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFC----YTEFAIEIPV-AGGSFAYLRIELGDFAA 154 (590)
Q Consensus 80 ~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~----~ael~~~~P~-~Gg~y~~~~~~~g~~~g 154 (590)
......++.++|+|++..|.. +|...++.++++++++++.++. +.|.....|. ..+.++++++.+||.+|
T Consensus 7 ~w~~~l~gt~IGaGiL~LP~~-----ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 7 GWMLGLYGTAIGAGVLFLPIQ-----AGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWG 81 (397)
T ss_pred hHHHHHHHHHHHHHHHHHHHH-----HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHH
Confidence 445667888899999999985 3444566666666666665555 4444443443 67899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 040051 155 FITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIAS 234 (590)
Q Consensus 155 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~ 234 (590)
.+.++.|++.......+++....+.+.+++..... .+.| ......++++++...++..|.|...|++.++.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~-----~~~p----~~~i~~lilv~il~~iv~~G~~~i~r~~~il~ 152 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLG-----TAPP----LRGLLSLALILILVAIMSFGEKLLFKIMGPLV 152 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCc----HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 99999999999999888888888777766543110 0000 12356667777778999999999999999999
Q ss_pred HHHHHHHHHHHHhhhccccCCCCC--CCCCCChhhHHHHHHHHHHhhcchhhhhhhh----hhccCC---CCchhhHHHH
Q 040051 235 AINTVVILFVIIVGFAHADASNLK--PFLPFGSEGIFKAAAVVYFAYGGFDNIATMA----EETKNP---SRDIPIGLLG 305 (590)
Q Consensus 235 ~~~i~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a----~E~k~p---~r~~p~a~~~ 305 (590)
..+++.++.+.+..+.+.+.++.. +.....+..++.++...+|+|.|+|..+.++ +|.+|| +|+..|++..
T Consensus 153 ~~~ii~l~~l~~~lip~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~ 232 (397)
T TIGR00814 153 FPLVLILVLLSLYLIPHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKG 232 (397)
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence 999998888888888887777664 2222345678899999999999999999999 777755 5778899999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC----CCcH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHh
Q 040051 306 SMSMITIIYCLMALSLCVMQPYTDID----PNAA-YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIAR 380 (590)
Q Consensus 306 ~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 380 (590)
+..+..++|+...+.+.+..++++.. ++.+ ...+.+....++...+..+...++..+|..+...+....+..+-+
T Consensus 233 ~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~ 312 (397)
T TIGR00814 233 ASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVL 312 (397)
T ss_pred HHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 99999999999999999999988753 2222 233333667778888888888888888888888888888877774
No 46
>PRK10483 tryptophan permease; Provisional
Probab=99.78 E-value=1.8e-15 Score=154.17 Aligned_cols=347 Identities=14% Similarity=0.069 Sum_probs=257.1
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhc
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELG 150 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g 150 (590)
.|++.+.++..++..|+.||.|++..|-.... .|-. +.+..++.++++..+++.+.|...++|+.-+....+++.+|
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~--~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~g~~~~tma~~~LG 84 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSG--AWFFWSMAALIFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLG 84 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcC
Confidence 46779999999999999999999988876643 5654 78889999999999999999999999988889999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|.+..+.+..+.+-.-....++..+.++.+++.++..+ ++ .+ .....+++.+++..+.+.|.|...|++
T Consensus 85 ~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~--~~----i~-----~~~~~llF~~~~~~iv~~gt~~vd~~n 153 (414)
T PRK10483 85 KGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMS--LN----VP-----ARAAGFGFALLVAFVVWLSTKAVSRMT 153 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcC--CC----Cc-----HHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 99888777777776667777788888888888875311 11 11 336778888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCCCC--C-CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHH
Q 040051 231 WIASAINTVVILFVIIVGFAHADASNLKPFL--P-FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSM 307 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~--~-~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~ 307 (590)
+++...+++.++..+...+.+.+.++..+.. + ..+...+.++...+++|.=...++.+.+..++-.|+++|+++.+.
T Consensus 154 ~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs 233 (414)
T PRK10483 154 AIVLGAKVITFFLTFGSLLGHVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGT 233 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHH
Confidence 9999999998888877777776655443211 1 123456788889999999889999998888765568999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCCC----CCc---HHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 308 SMITIIYCLMALSLCVMQPYTDID----PNA---AYSVAFQ-RVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 308 ~~~~~~y~l~~~~~~~~~~~~~~~----~~~---~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
.+..++|++-..++.+.+|+++.. +++ .....++ ..+.++...+..+...++..+|.++...+....+..+-
T Consensus 234 ~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~ 313 (414)
T PRK10483 234 LMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF 313 (414)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999977642 222 2223333 45666777788888888888888887777777665544
Q ss_pred hcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040051 380 RAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALL 441 (590)
Q Consensus 380 rd~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 441 (590)
+-+ +++.+ ......++.+...++.+...-..+..+.-.+.........+...
T Consensus 314 k~~---------~~~~~-r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~~~il~~ilP~l 365 (414)
T PRK10483 314 GFD---------DSAMG-RFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLAATIWAAIVPAL 365 (414)
T ss_pred CCC---------Ccccc-ceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 321 11111 12234457777777777755455555544444444444444443
No 47
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.76 E-value=4.6e-15 Score=151.03 Aligned_cols=344 Identities=14% Similarity=0.085 Sum_probs=250.9
Q ss_pred CHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHH
Q 040051 77 TWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAF 155 (590)
Q Consensus 77 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~ 155 (590)
+.....++..|+.+|.|++..|-.... .|-. +.+..++.++++..+++.+.|...++|+.-+.-..+++.+||.+..
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~--~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAG--AWFFWGAFILIIAWFSMLHSGLLLLEANLNYPVGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHcChHHHH
Confidence 677799999999999999988876643 5654 7888999999999999999999999998888999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 040051 156 ITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASA 235 (590)
Q Consensus 156 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 235 (590)
+.+..+.+-.-....++..+.++.++..++... .++ .+ .....+++.+++..+.+.|.|...++++++..
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~-~~~----i~-----~~~~~llF~~~~~~~v~~gt~~vd~~nr~l~~ 157 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNL-GYH----AN-----PRIVGICTAIFVASVLWISSLAASRITSLFLG 157 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc-cCC----Cc-----HHHHHHHHHHHHHHHHHhchhHHHHHHHHHHH
Confidence 877777766666777788888888888875311 011 01 23566888889999999999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCC-CCC----hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHH
Q 040051 236 INTVVILFVIIVGFAHADASNLKPFL-PFG----SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMI 310 (590)
Q Consensus 236 ~~i~~~~~~~i~~~~~~~~~~~~~~~-~~g----~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~ 310 (590)
.+++..+..+.....+.+.++..... ..+ +...+.++++.+++|.=...++.+....++-.|+.+|+++.+..+.
T Consensus 158 ~~ii~f~~~~~~l~~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~Ip 237 (415)
T PRK09664 158 LKIISFVIVFGSFFFQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLA 237 (415)
T ss_pred HHHHHHHHHHHHHhhcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHH
Confidence 99998888888877777766543211 111 2346778888889998889999998888766688999999999999
Q ss_pred HHHHHHHHHHHhhcccCCCCC----CCcHH----HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcC
Q 040051 311 TIIYCLMALSLCVMQPYTDID----PNAAY----SVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAH 382 (590)
Q Consensus 311 ~~~y~l~~~~~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~ 382 (590)
.++|++...++.+.+|+++.. ++... ....+...+++...+..+...++..+|.++...+....+..+-+.+
T Consensus 238 LviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~ 317 (415)
T PRK09664 238 LVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKID 317 (415)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999988877642 21122 2233355667778888888888888887777666666655433221
Q ss_pred CCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040051 383 MIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 383 ~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 442 (590)
+++ +-......++.+...++.++..-..+..+.-.+.........+..+.
T Consensus 318 ---------~~~-~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~~~il~~ilP~lM 367 (415)
T PRK09664 318 ---------NSH-GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLCATIWAVIIPAVL 367 (415)
T ss_pred ---------Ccc-ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11222344577777777777554555555544444444444554443
No 48
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.74 E-value=2.8e-14 Score=146.24 Aligned_cols=291 Identities=14% Similarity=0.160 Sum_probs=229.6
Q ss_pred CHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHH
Q 040051 77 TWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAF 155 (590)
Q Consensus 77 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~ 155 (590)
+.+...++..|+.+|.|++..|-.... +|.. +.+..++++.+....++.++|...+.|+..+....+++.+||..++
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~--~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~~~~~~~~a~~~LG~~g~~ 81 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAG--VGFSVTLILLIGLWALMCYTALLLLEVYQHVPADTGLGTLAKRYLGRYGQW 81 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHh--ChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhChHHHH
Confidence 567888999999999999999887643 6664 7777888888888899999998888887778999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHH
Q 040051 156 ITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASA 235 (590)
Q Consensus 156 ~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~ 235 (590)
+.+..|++.......++..+.++.+.+.++..-. . +.+ .....+.+.++...+.+.|.|...|++.++..
T Consensus 82 i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~-~----~i~-----~~~~~l~F~~~~~~iv~~g~~~v~~~n~~L~~ 151 (403)
T PRK15132 82 LTGFSMMFLMYALTAAYISGAGELLASSISDWTG-I----SMS-----PTAGVLLFTLVAGGVVCVGTSSVDLFNRFLFS 151 (403)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhcc-C----CCC-----hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 9999999988888888888877777666532000 0 000 22455666667777888999999999999999
Q ss_pred HHHHHHHHHHHhhhccccCCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHH
Q 040051 236 INTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYC 315 (590)
Q Consensus 236 ~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~ 315 (590)
.+++.++.+......+.+.++.... +.+....+.++...+++|.=...++.+....++-+|+++|+++.+..+..++|+
T Consensus 152 ~~ii~~~~~~~~l~p~~~~~~L~~~-~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl 230 (403)
T PRK15132 152 AKIIFLVVMLALMMPHIHKVNLLTL-PLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYI 230 (403)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHhcC-CccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 9998888777777777776665421 112123778888999999999999999999888778999999999999999999
Q ss_pred HHHHHHhhcccCCCCC----CCc---HHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHh
Q 040051 316 LMALSLCVMQPYTDID----PNA---AYSVAF-QRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIAR 380 (590)
Q Consensus 316 l~~~~~~~~~~~~~~~----~~~---~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ar 380 (590)
+-..++.+..|.++.. ++. +....+ +..+.++...+..+...++..+|..+...+....+..+-+
T Consensus 231 ~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 231 FWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999987642 222 333333 3567788888888888889999988888888887776553
No 49
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.71 E-value=5.8e-14 Score=145.77 Aligned_cols=286 Identities=14% Similarity=0.073 Sum_probs=229.0
Q ss_pred ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhhHH
Q 040051 70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAG-GSFAYLRI 147 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~G-g~y~~~~~ 147 (590)
+..+++.+..+.+...++..+|+|++..|-... . +|-. .++..++++.++....+++.|...+.|+.. +.++-+++
T Consensus 3 ~~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~-~-~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~ 80 (415)
T COG0814 3 SSMKKTSSDLGGVLILAGTAIGAGVLFLPVAFG-G-GGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVED 80 (415)
T ss_pred ccccCCcchHHHHHHHHccccccchhhhhHHhc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHH
Confidence 345677889999999999999999999887652 2 6665 788899999999999999999999999884 89999999
Q ss_pred HhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 148 ELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 148 ~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
.+||.++++.+..+.+.......++....++.+...++..-... + .......+++...+..+.+.+.+..-
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~------~---~~r~~~~lif~~~~~~l~~~~~~~~l 151 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN------P---LPRKLGSLIFALVLAFLSWLGTLAVL 151 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC------C---cchHHHHHHHHHHHHHHHHhchhHHH
Confidence 99999999999999999999999999999999998886421110 0 11446677777777779999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCCCCC--CC-CCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCc-hhhHH
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHADASNLKP--FL-PFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRD-IPIGL 303 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~--~~-~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~-~p~a~ 303 (590)
|.+..+...+++.++++......+.+.++... .. +..+..++.++...+++|.+......+..|+|+++++ ++|++
T Consensus 152 k~ts~l~~~~v~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 152 KITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 99999999999999888888888776655432 12 2456778899999999999999999999999988777 99999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCCCC-------CCcHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHH
Q 040051 304 LGSMSMITIIYCLMALSLCVMQPYTDID-------PNAAYSVAFQ-RVGMKWAKYLVALGALKGMTTVLLV 366 (590)
Q Consensus 304 ~~~~~~~~~~y~l~~~~~~~~~~~~~~~-------~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~ 366 (590)
..+..+..++|+...+......+.+..+ ++.....+.. ....+.......+....+..++...
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlg 302 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLG 302 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999888876432 2223333333 3444556666666666666555443
No 50
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.68 E-value=3.4e-14 Score=143.86 Aligned_cols=287 Identities=16% Similarity=0.175 Sum_probs=239.1
Q ss_pred cCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhH
Q 040051 75 CLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAA 154 (590)
Q Consensus 75 ~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g 154 (590)
|+|.+|.+.+.+..++|+++...|+..+.. +| .+|++.+++++..+..++.+..+.+++|+. ..+++.++.+||..|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~-~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~~-~l~~~~~~~~Gk~lg 77 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQ-AG-DAWISVLLGGLIGLLLALLIYYLLKRFPGK-TLVEISEKLFGKWLG 77 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHhCcHHH
Confidence 578999999999999999999999998877 56 899999999999999999999999999976 489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHH
Q 040051 155 FITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIAS 234 (590)
Q Consensus 155 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~ 234 (590)
...+..+.+.+....+.....+++.++..+-.+++ ...+...+++........|.+..+|...+..
T Consensus 78 ~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~TP--------------~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~ 143 (320)
T PF03845_consen 78 KIINLLYILYFLLISALVLREFSEFIKTYLLPETP--------------IWVIILLFLLVAAYAARKGIEVIARVAEILF 143 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCC--------------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999987654444 3367777788888899999999999888888
Q ss_pred HHHHHHHHHHHHhhhccccCCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHH
Q 040051 235 AINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIY 314 (590)
Q Consensus 235 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y 314 (590)
...++.++.+........+.+|..|..+.|+...+.+.....+.|.|.|....+...+||| |+..|....+...++++|
T Consensus 144 ~~~~i~~~~i~~~~~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~k~~~~~~~~~~~~~ 222 (320)
T PF03845_consen 144 PIFLILLLLILLLSIPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDK-KKLKKSLLIAILISGLFL 222 (320)
T ss_pred HHHHHHHHHHHHHhcccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-hHHHHHHHHHHHHHHHHH
Confidence 8888777777777777778888889999999999999888999999999999999999997 557899999999999999
Q ss_pred HHHHHHHhhcccCCCCCC-CcHHHHHHHHhChh----HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 315 CLMALSLCVMQPYTDIDP-NAAYSVAFQRVGMK----WAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 315 ~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
.+..+....+.+++..+. .-|.....+....+ -...++...-+.+.+......++..++.+..+-
T Consensus 223 ~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f 292 (320)
T PF03845_consen 223 LFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLF 292 (320)
T ss_pred HHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999988888888766543 45777777744322 233444445555566666666777777665433
No 51
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.66 E-value=5.9e-13 Score=135.71 Aligned_cols=288 Identities=11% Similarity=0.062 Sum_probs=225.5
Q ss_pred HHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcc-cccccchhhhHHHhchhhHHHHHHH
Q 040051 83 WFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEI-PVAGGSFAYLRIELGDFAAFITAGN 160 (590)
Q Consensus 83 ~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~-P~~Gg~y~~~~~~~g~~~g~~~g~~ 160 (590)
...+|..+|+|++..|-.... +|.. .++..+++..++...+..++|..... |+..+.-+.+++.+||.+|.+.+..
T Consensus 26 l~l~GTAIGAGmLfLPI~~g~--~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~il 103 (443)
T PRK13629 26 LGLFGTAIGAGVLFFPIRAGF--GGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFL 103 (443)
T ss_pred HHHHHHHHhHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHH
Confidence 567788899999999877632 5664 77778888999999999999999998 5666788899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHH
Q 040051 161 ILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVV 240 (590)
Q Consensus 161 ~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~ 240 (590)
|++.......++.....+.+.+.+.+.-. . ++. .....+++++.++..+...|.|...|++.++...+++.
T Consensus 104 Yff~ly~ll~aY~~~itn~l~sfl~~ql~-~---~~~-----~r~l~slifv~~l~~iv~~G~~~v~kv~~~Lv~~~i~~ 174 (443)
T PRK13629 104 YFFAICPLLWIYGVTITNTFMTFWENQLG-F---APL-----NRGFVALFLLLLMAFVIWFGKDLMVKVMSYLVWPFIAS 174 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcC-c---CCc-----cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 99998888888887777777765322100 0 000 14478888899999999999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCCCC----CC----Ch-hhHHHHHHHHHHhhcchhhhhhhhhh----cc------CCCCchhh
Q 040051 241 ILFVIIVGFAHADASNLKPFL----PF----GS-EGIFKAAAVVYFAYGGFDNIATMAEE----TK------NPSRDIPI 301 (590)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~~~----~~----g~-~~~~~~~~~~~~~~~G~e~~~~~a~E----~k------~p~r~~p~ 301 (590)
++.+.+..+.+.+.++..... +. +. ...+.+++..+++|.=.-.++.++.. .+ +.+|+..|
T Consensus 175 l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~r 254 (443)
T PRK13629 175 LVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQ 254 (443)
T ss_pred HHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHH
Confidence 999999999888776654211 11 11 24677888888888777777776655 42 23478899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCC----CCcH-HHHHHHHhCh---------hHHHHHHHHHHHHHHHHHHHHh
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDID----PNAA-YSVAFQRVGM---------KWAKYLVALGALKGMTTVLLVG 367 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~----~~~~-~~~~~~~~~~---------~~~~~i~~~~~~~~~~~~~~~~ 367 (590)
++..+..+..++|++..+.+.+..|++++. ++.+ ...+.+..++ ++...+..+...++..+|.++.
T Consensus 255 ii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv 334 (443)
T PRK13629 255 IISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGH 334 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999988863 3445 5566665555 6678888888888888888888
Q ss_pred hhchhHHHHHHHhc
Q 040051 368 ALGNARYTTHIARA 381 (590)
Q Consensus 368 ~~~~sR~l~~~ard 381 (590)
..+.--.+..+.+.
T Consensus 335 ~LGl~E~l~gl~~~ 348 (443)
T PRK13629 335 YLGTLEGLNGLILK 348 (443)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887753
No 52
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=99.39 E-value=3.5e-10 Score=115.05 Aligned_cols=292 Identities=15% Similarity=0.150 Sum_probs=194.2
Q ss_pred ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccc-------cccch
Q 040051 70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPV-------AGGSF 142 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~-------~Gg~y 142 (590)
++.+++++.++.++.+++..+|+|-......++.. |||++++...+.+++...+.++=.-|+.+|.+ .||..
T Consensus 13 ~~~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~-GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~ 91 (416)
T PF01235_consen 13 KEEEGGISPFQALCTALAGTVGTGNIAGVATAIAI-GGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPM 91 (416)
T ss_pred CCCCCCcChHHHHHHHHHhccCcchHHHHHHHHHh-hchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHH
Confidence 34466899999999999999999999999888877 99997776777788888877777777766652 47899
Q ss_pred hhhHHHhchh-hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHh
Q 040051 143 AYLRIELGDF-AAFITAGNILLESIVG-GAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIAS 220 (590)
Q Consensus 143 ~~~~~~~g~~-~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (590)
.|.++.+|.. ++.+.+......+... ...-+...++.++..++.+ .+..++++.++..++..
T Consensus 92 yyi~~gl~~k~la~~fai~~~~~~~~~~~~~Q~nsi~~~~~~~f~i~----------------~~~~gi~l~~l~~~vi~ 155 (416)
T PF01235_consen 92 YYIEKGLGSKWLAILFAIFLIIAFGIGFNMVQANSIADALSSAFGIP----------------PWITGIILAILVALVIF 155 (416)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhcccc----------------HHHHHHHHHHHHHHHHH
Confidence 9999999854 4444444433333222 3334444444444433321 34677778888888889
Q ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC---------CCCCCC----hhhHHH------HHHHHHHhh--
Q 040051 221 ISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLK---------PFLPFG----SEGIFK------AAAVVYFAY-- 279 (590)
Q Consensus 221 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~g----~~~~~~------~~~~~~~~~-- 279 (590)
-|+|..+++...+.-++.+.-++..+..+.. +.++.. .|.+.. ..|... ++.=.+|+-
T Consensus 156 GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~-n~~~ip~~~~~If~~AF~~~aa~GG~~G~~i~~ai~~Gv~Rg~fSNEA 234 (416)
T PF01235_consen 156 GGIKRIAKVSEKLVPFMAILYILGGLIIIII-NIDQIPAAFSLIFSSAFTPKAAFGGFAGSTIMMAIRQGVARGLFSNEA 234 (416)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHcCCccchhhHHHHHHHHHHHHhhhhhhccCCC
Confidence 9999999999888777766554444433321 111111 233332 222111 111113333
Q ss_pred -cchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCC---CCCcHHHHHHHHhChhHHHHHHHHH
Q 040051 280 -GGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDI---DPNAAYSVAFQRVGMKWAKYLVALG 355 (590)
Q Consensus 280 -~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~i~~~~ 355 (590)
.|....+|.+.|+++|.|+--.+++-..+-+.++..++.+++.....++.. +...-...+++..-+++...++.++
T Consensus 235 G~Gsa~~a~a~a~~~hP~~QGl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~~~~~g~~l~~~Af~~~~g~~g~~~v~i~ 314 (416)
T PF01235_consen 235 GLGSAPIAHAAAETDHPVRQGLVQMFEVFIDTIIVCTITALVILVTGVWSWGSGLEGAALTQAAFSTVLGSWGPYFVAIA 314 (416)
T ss_pred CCChhHHHHHHhcCCCcHHHeeeeeehHhHHHHHHHHHHHHHhhccCCCCCCCcchHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 577788888889999988877777777777777777777776655433221 2122345566665558888999999
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHH
Q 040051 356 ALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 356 ~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
+++-.+++.+++.+..-|.+.-+.
T Consensus 315 l~lFafTTilg~~~yge~~~~yl~ 338 (416)
T PF01235_consen 315 LFLFAFTTILGWYYYGEKCAEYLF 338 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999988888776555
No 53
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.36 E-value=6.7e-10 Score=114.60 Aligned_cols=281 Identities=15% Similarity=0.151 Sum_probs=192.1
Q ss_pred cccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccccccc-----chhh
Q 040051 71 DMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGG-----SFAY 144 (590)
Q Consensus 71 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg-----~y~~ 144 (590)
..+|+-++++..+-.++.++|.|+...|.. ..+ .|-. .+...++.+++++.++..+.+.-..++.-.| .-+.
T Consensus 33 ~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A-~~~-lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 33 TPSRGGSWWQAAFHIINALIGAGVLSLPYA-LAQ-LGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccCCCCcceehhhheehhhhhhhhhhhHHH-HHh-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 346789999999999999999999988844 444 7865 5888899999999999989999888887777 6677
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchh
Q 040051 145 LRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTR 224 (590)
Q Consensus 145 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 224 (590)
++++||+..-.++++...+.....+..+....++.+...++....+-. ..+ ...+.+....+. +....+....
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~-----~l~-~~~f~iif~~i~-~~~s~lp~~~ 183 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN-----SLD-KQYFIIIFGLIV-LPLSQLPNFH 183 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc-----ccc-ceehhhhHHHHH-HHHHHCCCcc
Confidence 788999887778888888888888888888899999888765322110 111 111222222222 2222244445
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccCC--CCCCCCCCChhhH-HHHHHHHHHhhcchhhhhhhhhhccCCCCchhh
Q 040051 225 KTSVLNWIASAINTVVILFVIIVGFAHADAS--NLKPFLPFGSEGI-FKAAAVVYFAYGGFDNIATMAEETKNPSRDIPI 301 (590)
Q Consensus 225 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~--~~~~~~~~g~~~~-~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~ 301 (590)
...++.....+..+.........+..++-.. ...+....+.... +.++....|+|.|.-...+.-..+|+|+| ++|
T Consensus 184 ~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~-f~~ 262 (437)
T KOG1303|consen 184 SLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPK-FKK 262 (437)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchh-hhh
Confidence 5555555555555555455555555544211 1111111111222 77888899999999999999999999977 999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHh
Q 040051 302 GLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRV-GMKWAKYLVALGALKGMTTVLLVG 367 (590)
Q Consensus 302 a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~ 367 (590)
+.+.+..+++++|+..++.-....+.+..+ +..... ...|.....++.+.+-.+++..-.
T Consensus 263 ~~lis~~~~~~~y~~vai~GY~aFG~~~~~------~il~s~~~p~~~~~~ani~i~~h~i~s~~i~ 323 (437)
T KOG1303|consen 263 ALLISYIIVTFLYFPVAIIGYWAFGDSVPD------NILLSLQPPTWLIALANILIVLHLIGSYQIY 323 (437)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhccccch------hhhhcccCchhHHHHHHHHHHHHHhhhhhhh
Confidence 999999999999999999877776654332 122223 356777777777777666654433
No 54
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.31 E-value=3.3e-09 Score=107.76 Aligned_cols=350 Identities=13% Similarity=0.100 Sum_probs=201.7
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHH-HHHHHHHHHH---HHHHHHHhhhccccc---------
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLS-YVASGVSAML---SVFCYTEFAIEIPVA--------- 138 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~-~ll~~~~~~~---~a~~~ael~~~~P~~--------- 138 (590)
++..+..+.+.=-+.+++|+|++..|... .. +|.. ..+. .+++.+...+ ..-|--+++++.-.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AF-k~-sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~ 121 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAF-KN-SGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAE 121 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHH-Hh-cchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHH
Confidence 44578888888888899999998777654 44 7753 3433 4444444333 344566666664111
Q ss_pred ---ccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCccccccccccccCchhHHHHHHHHH
Q 040051 139 ---GGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNRE-PNSLRIHTNLREGYNLLDPIAVAVLAT 214 (590)
Q Consensus 139 ---Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (590)
-+.+.| -|.+||...+++-....+.+...+..+....++-++++.+.. ...+. ......+.+..
T Consensus 122 ~a~~~~~~~-~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s-----------~~~~i~~~~~~ 189 (449)
T KOG1304|consen 122 SAMEGGPGW-LRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLS-----------VRLYILIQLPP 189 (449)
T ss_pred HHHcCCcHH-HHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCcc-----------HHHHHHHHHHH
Confidence 122335 788999999999999999999999999999999999988731 12221 12332233333
Q ss_pred HHHHH-hhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-CCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhc
Q 040051 215 AATIA-SISTRKTSVLNWIASAINTVVILFVIIVGFAHAD-ASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEET 292 (590)
Q Consensus 215 ~~~i~-~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 292 (590)
...+| .+..|...-+..+.-++.++.++++..-.+.... .++...+. ++.++-..+..++|+|-|.-.+-.+=+++
T Consensus 190 ~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~--~~~~~~lf~GtaifafEGig~VLPlEn~M 267 (449)
T KOG1304|consen 190 LLLLNLIRNLKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVT--GWSGLPLFFGTAIFAFEGIGMVLPLENSM 267 (449)
T ss_pred HHHHHHHHhhHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCcccccccc--chhhhHHHHHHHHHHhccceEEEehhhcc
Confidence 33333 2344444444444444444333333333222222 11221222 36677778889999999999999999999
Q ss_pred cCCCCchh---hHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 293 KNPSRDIP---IGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGAL 369 (590)
Q Consensus 293 k~p~r~~p---~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 369 (590)
|+| ++.| ..+-.++.+++++|....+.-+...+++.-+.-. -+....++...+.+...++.+-+.--.++
T Consensus 268 k~P-~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sIT------LNLP~~~l~~~Vkl~~ai~I~ls~pLQ~y 340 (449)
T KOG1304|consen 268 KKP-QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSIT------LNLPQEILSQTVKLLLAIAIFLTYPLQFY 340 (449)
T ss_pred cCh-hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEE------ecCCccHHHHHHHHHHHHHHHHcCchhhh
Confidence 999 4578 9999999999999999888766666654432100 01112333444445444444444444455
Q ss_pred chhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040051 370 GNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIAL-FSGLDILSALLSLSTLFVFMMMAVALLVRRYYVR 448 (590)
Q Consensus 370 ~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~ 448 (590)
..-++++.- +.+++++ +++.-.++.-=++..+++.+++. +.+++.++++.+......-.++.=+++-..-..+
T Consensus 341 v~~eIi~~~-----i~~k~~~-~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~ 414 (449)
T KOG1304|consen 341 VPIEIIEPG-----IRKKFSE-NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYP 414 (449)
T ss_pred hhHHHHHHh-----HHHhcCc-chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcc
Confidence 555555532 2222321 10000111111112222222222 4788888888887766555555555555444444
Q ss_pred CCC
Q 040051 449 EIT 451 (590)
Q Consensus 449 ~~~ 451 (590)
+..
T Consensus 415 ~~~ 417 (449)
T KOG1304|consen 415 EGK 417 (449)
T ss_pred ccc
Confidence 443
No 55
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=99.30 E-value=8.8e-09 Score=105.55 Aligned_cols=286 Identities=16% Similarity=0.166 Sum_probs=179.8
Q ss_pred ccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhccc---c----cccchhhhH
Q 040051 74 RCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIP---V----AGGSFAYLR 146 (590)
Q Consensus 74 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P---~----~Gg~y~~~~ 146 (590)
++++.++.++.+++..+|+|-......++.. +||++++...+++++...+.+.-.-++.++- + .||...|.+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~-GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~g~~~GGP~yyi~ 123 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAI-GGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDADGVFRGGPMYYIK 123 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCEecChHHHHH
Confidence 4699999999999999999855566666655 9998644455555555555555555554443 2 244558888
Q ss_pred HHhc-hhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchh
Q 040051 147 IELG-DFAAFITAGNILLES-IVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTR 224 (590)
Q Consensus 147 ~~~g-~~~g~~~g~~~~l~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 224 (590)
+.++ |++|.+.... .+.+ ...........++.++..++. + .+..++++.++...+..-|+|
T Consensus 124 ~gl~~k~lg~lfa~~-~i~~f~~~~~~Q~nsi~~~~~~~~~~--~--------------~~v~~i~l~~l~~~vi~GGik 186 (425)
T TIGR00835 124 KGLGMRWLAVLFAVF-LIASFGIGNMVQANAIASALSNAFNV--P--------------KLVTGIVLTVLTALIIFGGLK 186 (425)
T ss_pred HHhCccHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHcCC--c--------------HHHHHHHHHHHHHHHHhcCch
Confidence 8766 7778777766 4444 445566666666776644421 1 346667777777777777999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCC---------CCCCCChhhHHHH----------HHHHHHhh---cch
Q 040051 225 KTSVLNWIASAINTVVILFVIIVGFAHADASNLK---------PFLPFGSEGIFKA----------AAVVYFAY---GGF 282 (590)
Q Consensus 225 ~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~---------~~~~~g~~~~~~~----------~~~~~~~~---~G~ 282 (590)
..+++...+.-++.+..+...+.... .+.+|.. .|.+....|-+.+ +.=..|+- .|.
T Consensus 187 ~Ia~v~~~lvP~m~~~Y~~~~l~ii~-~n~~~lp~~~~~If~~AF~~~a~~GG~~G~~v~~ai~~Gv~Rg~fSNEAG~Gs 265 (425)
T TIGR00835 187 RIAKISSVVVPFMALLYVIMALYIII-MNIEQLPAVISLIFRSAFGGDAAAGGFAGSTVAQAIMIGVKRGLFSNEAGMGS 265 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHHhhHHHHhccccccCc
Confidence 99999998887777665444332222 1222211 2223221111212 11123433 577
Q ss_pred hhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC---CCCCCcHHHHHHHHhChhHHHHHHHHHHHHH
Q 040051 283 DNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYT---DIDPNAAYSVAFQRVGMKWAKYLVALGALKG 359 (590)
Q Consensus 283 e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 359 (590)
...+|.+.|+++|.|+--.++.-..+-+.++..+..+++.....++ +++...-...+++..-+++...++.+++++-
T Consensus 266 a~~a~a~a~~~hP~~QGl~~~~~vfiDTivvCt~Talvil~tg~~~~~~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lF 345 (425)
T TIGR00835 266 APIAAAAAQVSHPVRQGLVQMLGVFIDTMIVCTATALVILLSGVWNNGEGLSGAQLTQQALSYGLGSFGAVFVAVALFLF 345 (425)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 7778888899999887766666666656667777766655443333 1121122334566544567889999999999
Q ss_pred HHHHHHHhhhchhHHHHHH
Q 040051 360 MTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 360 ~~~~~~~~~~~~sR~l~~~ 378 (590)
.+++.+++.+..-+.+.-+
T Consensus 346 aftTii~~~yyge~~~~yl 364 (425)
T TIGR00835 346 AFSTIIGWYYYGEKNAEFL 364 (425)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999988877776654
No 56
>PLN03074 auxin influx permease; Provisional
Probab=99.25 E-value=1.9e-08 Score=106.40 Aligned_cols=238 Identities=11% Similarity=0.069 Sum_probs=136.2
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHH----Hhhhcccccccc------
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYT----EFAIEIPVAGGS------ 141 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~a----el~~~~P~~Gg~------ 141 (590)
.+.-+..+...-.+.+.+|.|++..|... .+ +|.. .++..++.+++...++..+. |...+.|+.+-.
T Consensus 43 ~~~~s~~~~~~~l~~~~vG~GILaLP~Af-~~-~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~ 120 (473)
T PLN03074 43 WHGGSVYDAWFSCASNQVAQVLLTLPYSF-SQ-LGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVI 120 (473)
T ss_pred cCCchHHHHHHHHHHHHHhHHHHhHHHHH-HH-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHH
Confidence 34456666666688888999999887765 34 7764 66677777777777666554 566666654321
Q ss_pred --hhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCCccccccccccccCchhHHHHHHHHHHHHH
Q 040051 142 --FAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNR-EPNSLRIHTNLREGYNLLDPIAVAVLATAATI 218 (590)
Q Consensus 142 --y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (590)
.+-+.+.+||.++........+.....+.......++.+..+... +...| ..+..++.+.+.
T Consensus 121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~~~~~~------------~~i~~~v~~~~~--- 185 (473)
T PLN03074 121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNLDKRTW------------TYIFGACCATTV--- 185 (473)
T ss_pred HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCcCCCeE------------EeehHHHHHHHH---
Confidence 222344689988877755444444443333333333322222111 00111 112222222222
Q ss_pred HhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCc
Q 040051 219 ASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRD 298 (590)
Q Consensus 219 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~ 298 (590)
-....|...++..+.....+.....+++......+......-.+.++..++.++..++|+|.|.-....+-.|+|||+ +
T Consensus 186 ~i~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~~~~~~~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~-~ 264 (473)
T PLN03074 186 FIPSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQVEGVKHSGPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQ-K 264 (473)
T ss_pred HccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCchhHHHHHHHHHHHHHHhcccccHHHHHHhccChh-c
Confidence 234455555554444433333222333333333332222111123455667777788999999999999999999995 5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040051 299 IPIGLLGSMSMITIIYCLMALSLCVMQPYT 328 (590)
Q Consensus 299 ~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~ 328 (590)
.++....+...+..+|+...+..+...+++
T Consensus 265 F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~ 294 (473)
T PLN03074 265 FKYIYLAATLYVLTLTLPSAAAVYWAFGDE 294 (473)
T ss_pred ccchHHHHHHHHHHHHHHHHHeeeeeechh
Confidence 898888888888888888777665555543
No 57
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=99.24 E-value=4.3e-08 Score=98.65 Aligned_cols=291 Identities=16% Similarity=0.174 Sum_probs=201.0
Q ss_pred cccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhccc-------ccccchh
Q 040051 71 DMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIP-------VAGGSFA 143 (590)
Q Consensus 71 ~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P-------~~Gg~y~ 143 (590)
+-+++++.++.++.+++..+|+|-......++.. +||++++...+.+++...+.+.=+-|+..|. ..||..+
T Consensus 58 ~~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~-GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~y 136 (452)
T COG1115 58 AGKGGVSSFQALMTSLAARVGTGNIAGVATAIAL-GGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAY 136 (452)
T ss_pred CCCCCcChHHHHHHHHHhccCcchHHHHHHHHHc-CCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHH
Confidence 3467899999999999999999999998888876 9999666666677888888888777887776 2478999
Q ss_pred hhHHHhc-hhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhh
Q 040051 144 YLRIELG-DFAAFITAGNILLESI-VGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASI 221 (590)
Q Consensus 144 ~~~~~~g-~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (590)
|.++.+| |+.|.+.+....+++- +....-+.+.++.+++.++.+ ....++++.++...+...
T Consensus 137 Yi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~~~----------------~~~~gi~la~l~~~VI~G 200 (452)
T COG1115 137 YIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFGIP----------------PLVTGIVLALLVALVIFG 200 (452)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcCCc----------------HHHHHHHHHHHHHHHHHc
Confidence 9999999 6677777766666665 567777778888888777543 347788888888899999
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCC---------CCCCCC----Chhh------HHHHHHHHHHhh---
Q 040051 222 STRKTSVLNWIASAINTVVILFVIIVGFAHADASNL---------KPFLPF----GSEG------IFKAAAVVYFAY--- 279 (590)
Q Consensus 222 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~---------~~~~~~----g~~~------~~~~~~~~~~~~--- 279 (590)
|+|..+++.....-.+-+.-++..+..+.. +.++. +.|.+. |+.| +..++.=..|+-
T Consensus 201 Gi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~-n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAG 279 (452)
T COG1115 201 GIKRIAKVSSKVVPFMAILYVLVALVIIVL-NISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAG 279 (452)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhccccc
Confidence 999999998876655544333322222211 11100 122222 2211 112222234443
Q ss_pred cchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC--CCc-HHHHHHHHhChhHHHHHHHHHH
Q 040051 280 GGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID--PNA-AYSVAFQRVGMKWAKYLVALGA 356 (590)
Q Consensus 280 ~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~i~~~~~ 356 (590)
.|....++.+.++++|.|+--..+....+-+.++.....+.+.....++... +.. -...+++..-+++...++.+.+
T Consensus 280 mGsap~aaAaA~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l 359 (452)
T COG1115 280 MGSAPIAAAAAKTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIAL 359 (452)
T ss_pred CCcchhHHHhhcCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHH
Confidence 4566666777788899776656666555556677777777766655443332 233 3445677777789999999999
Q ss_pred HHHHHHHHHHhhhchhHHHHHHH
Q 040051 357 LKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 357 ~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
.+-.+++.+++.+..-|.+.-+.
T Consensus 360 ~lFafTTIlg~yyyge~~~~fl~ 382 (452)
T COG1115 360 FLFAFTTILGWYYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888776554
No 58
>PRK11375 allantoin permease; Provisional
Probab=99.22 E-value=3.2e-07 Score=97.61 Aligned_cols=332 Identities=13% Similarity=0.054 Sum_probs=169.3
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAY 144 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~ 144 (590)
+.++.+|+.++++.+.+=++..+..+.+...+..+. .|.. ++++.+++.++....+...+..+.++-. +....
T Consensus 19 pvp~~~Rt~~~~~~~~~W~g~~~~i~~~~~~g~~l~--~GLs~~~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl--~~~v~ 94 (484)
T PRK11375 19 PKTQSQRTWKTFNYFTLWMGSVHNVPNYVMVGGFFI--LGLSTFSIMLAIILSAFFIAAVMVLNGAAGSKYGV--PFAMI 94 (484)
T ss_pred cCCccccCCcHHHHHHHHHHHhccHHHHHHHHHHHH--ccchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--ChhHh
Confidence 345557889999999887776655444433333332 3432 5555555555544444444444444322 46677
Q ss_pred hHHHhchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhcCCCCccccc-cccc-cccCc-hhHHHHHHHHHHHHHHh
Q 040051 145 LRIELGDFAAFITAGNIL-LESIVGGAAVARAWTSYFTTLLNREPNSLRIH-TNLR-EGYNL-LDPIAVAVLATAATIAS 220 (590)
Q Consensus 145 ~~~~~g~~~g~~~g~~~~-l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~-~~~~~~~~~~~~~~i~~ 220 (590)
.+..||...+.+.+.... +..+...+......++.+..++...-+.+... .+.+ .+.+. ..+..+++.++.+.+..
T Consensus 95 sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l~~~~~~ 174 (484)
T PRK11375 95 LRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLVNVGIGF 174 (484)
T ss_pred HHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHHHHHHHH
Confidence 788999887677776653 45555555666666665554432211111100 0111 01111 12333444566666677
Q ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC-------ChhhHHHHHHHHHHhhc-chhhhhhhhhhc
Q 040051 221 ISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPF-------GSEGIFKAAAVVYFAYG-GFDNIATMAEET 292 (590)
Q Consensus 221 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~-------g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~ 292 (590)
.|.|...+++.+...+.++..+.+.+..+...+.+......+. ....+..++...+-++. +.-..+..+...
T Consensus 175 ~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~~~D~tRy~ 254 (484)
T PRK11375 175 GGGKVLNKFTAILNPCIYIVFGGMAIWAISLVGIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVSASDFTQNA 254 (484)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHccccchhccc
Confidence 8999999999888877766555555444443332211111111 12233333323222333 444567788888
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHH-HhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHH-Hhhhc
Q 040051 293 KNPSRDIPIGLLGSMSMITIIYCLMALS-LCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLL-VGALG 370 (590)
Q Consensus 293 k~p~r~~p~a~~~~~~~~~~~y~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~ 370 (590)
|++ |+.-++...+..+...+.....+. .............+| .+++...+......+..+.++++..++.. ..+++
T Consensus 255 k~~-~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp-~~i~~~~~~~~~~~~a~l~~v~a~~~tN~~~N~ys 332 (484)
T PRK11375 255 HSF-RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNV-LDIVQRWDSLFASFFAVLVILMTTISTNATGNIIP 332 (484)
T ss_pred CCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCH-HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 886 444566666665555443222222 111111100112334 34444444455555556666777776644 45555
Q ss_pred hhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhH
Q 040051 371 NARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGL 418 (590)
Q Consensus 371 ~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~ 418 (590)
.+--+ .+.+||+..+ | ++.++.++++.++..+..+
T Consensus 333 ~~~~l-----~~l~pk~i~~---~-----~~~~i~~iig~~~~pw~~~ 367 (484)
T PRK11375 333 AGYQI-----AALAPTKLTY---K-----NGVLIASIISLLICPWKLM 367 (484)
T ss_pred HHHHH-----HHhCcCccch---h-----hHHHHHHHHHHHhccHHHh
Confidence 54333 3567754322 2 3666676676666655433
No 59
>PTZ00206 amino acid transporter; Provisional
Probab=99.18 E-value=6.3e-08 Score=102.87 Aligned_cols=245 Identities=12% Similarity=0.097 Sum_probs=153.7
Q ss_pred CCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhH
Q 040051 76 LTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAA 154 (590)
Q Consensus 76 l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g 154 (590)
=|..+..+-.+.+++|+|++..|... .+ +|.. .++..++.++++......+.+.+.+ ++.-...+-+++.+||..+
T Consensus 60 gg~~~s~fnL~~~~iGaGILsLP~Af-~~-~G~v~giillil~a~ls~ys~~lL~~~~~~-~~~~sY~~la~~~~G~~g~ 136 (467)
T PTZ00206 60 GGIAASAFNIASSTVGAGIVGLPSAA-NS-SGLVMAMIYLIIITAMTIFSIYALGVAADK-TNIRTYEGVARVLLGPWGS 136 (467)
T ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHH-HH-hhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCCCHHHHHHHHhCHHHH
Confidence 45566667777788999999888765 33 6764 6666677777777777677776655 3333455666778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHH
Q 040051 155 FITAGNILLESIVGGAAVARAWTSYFTTLLNREP-NSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIA 233 (590)
Q Consensus 155 ~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~ 233 (590)
+++.....+.....+.++....++.+...+.... .++-. . ..... .....+.+.+.+-+.....++..+++..+.
T Consensus 137 ~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~--~-~~~~r-~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~ 212 (467)
T PTZ00206 137 YYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK--Q-KSGNR-LLTSLMWLCFMLPLVIPRHIDSLRYVSTIA 212 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh--h-ccCcE-EeeeehhhhHhhhcccccchHHHHHHHHHH
Confidence 9999999999999999999999998888775421 11100 0 00000 001111112222222344555555554443
Q ss_pred HHHHHHHHHHHHHhhhccccCCCCC----------C--CCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCC-CCchh
Q 040051 234 SAINTVVILFVIIVGFAHADASNLK----------P--FLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNP-SRDIP 300 (590)
Q Consensus 234 ~~~~i~~~~~~~i~~~~~~~~~~~~----------~--~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p-~r~~p 300 (590)
....+...+.+++.......+++.. + .++ .....+.++....|+|.+.......-+|+||| .|+..
T Consensus 213 ~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~-~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~ 291 (467)
T PTZ00206 213 VSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFN-SGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFV 291 (467)
T ss_pred HHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEec-CchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHH
Confidence 3332222222222222221111111 0 111 11346778899999999999999999999997 36788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 040051 301 IGLLGSMSMITIIYCLMALSLCVMQPYT 328 (590)
Q Consensus 301 ~a~~~~~~~~~~~y~l~~~~~~~~~~~~ 328 (590)
+.+..+..++.++|.++.+.-+...+.+
T Consensus 292 ~v~~~s~~i~~~lY~~~G~~GYl~fG~~ 319 (467)
T PTZ00206 292 LASTIAMGMCFTMYVLTAFFGYMDFGRN 319 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 9999999999999999988877666643
No 60
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=99.03 E-value=3.3e-06 Score=86.65 Aligned_cols=237 Identities=11% Similarity=0.015 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 040051 110 IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPN 189 (590)
Q Consensus 110 ~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (590)
++++.+++-++........++++.+...+ +..-.+..||...+.+.....++.++...+.+...+++......+
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glp--qmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~---- 127 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLP--QMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG---- 127 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCC--hheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC----
Confidence 56666666666666666666666655433 455556789999998888888888888888777777665222111
Q ss_pred ccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCC-CCCCCCCChhhH
Q 040051 190 SLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASN-LKPFLPFGSEGI 268 (590)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-~~~~~~~g~~~~ 268 (590)
+| .....++..++.++...+|.|...+++++.....+...+..+...+-..+..+ ...-.|..+..+
T Consensus 128 -------~~-----~~~~ili~g~l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~f 195 (442)
T COG1457 128 -------LP-----VWAGILIIGVLMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDALWVKGPTSPLSF 195 (442)
T ss_pred -------Cc-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeeccCCCcchhH
Confidence 11 33555666677888899999999999999998887777666665554222221 111224445556
Q ss_pred HHHHHHHHHhhc-chhhhhhhhhhccCCC--CchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhCh
Q 040051 269 FKAAAVVYFAYG-GFDNIATMAEETKNPS--RDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGM 345 (590)
Q Consensus 269 ~~~~~~~~~~~~-G~e~~~~~a~E~k~p~--r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (590)
..++..++-.+. +--.++.++.-.|+|+ |.+--+.....+-...++++....... .+.++ +..+.....|+
T Consensus 196 l~a~slv~g~~~sw~~~~aDysRy~~~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a-~g~~~-----~~~~~~~~~G~ 269 (442)
T COG1457 196 LSALSLVIGSFASWGPYAADYSRYAPSPTPSKAFLAAVLGFFLGTSFMMILGAALAAA-AGNAD-----SIADVMLGLGG 269 (442)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCc-----hHHHHHHhccc
Confidence 666555443333 3355677777777765 333222222222233333333333332 33222 34455555553
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchh
Q 040051 346 KWAKYLVALGALKGMTTVLLVGALGNA 372 (590)
Q Consensus 346 ~~~~~i~~~~~~~~~~~~~~~~~~~~s 372 (590)
+.....+.+.++..++..-.+|+++
T Consensus 270 --~g~~~~lil~l~~~ttN~~nlYsa~ 294 (442)
T COG1457 270 --FGLPAILILVLGTVTTNANNLYSAG 294 (442)
T ss_pred --HHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 3344445555555555444444443
No 61
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=99.01 E-value=2.3e-06 Score=82.71 Aligned_cols=265 Identities=13% Similarity=0.045 Sum_probs=164.5
Q ss_pred HHHhhhhhcchhhhcchHhHhhccCh---HHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHH
Q 040051 83 WFGFGAVIGAGIFVLTGQEAHKHAGP---AIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAG 159 (590)
Q Consensus 83 ~~~~~~~ig~gi~~~~~~~~~~~~G~---~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~ 159 (590)
+..++.++|.|.- .|+-.-+..|+ .+.++.++.+++....+....|+++++. +...-++.++.+||.++-..-.
T Consensus 10 f~~ig~~vGAGfA--sGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~-a~~y~~~~~~v~~~~~~ki~d~ 86 (349)
T COG3949 10 FAFIGTVVGAGFA--SGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN-ATSYREILKYVSGPKFAKIIDI 86 (349)
T ss_pred HHHHHHhhccccc--chHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-ccchHHHHHHHhhHHHHHHHHH
Confidence 3455677888853 44443344554 3899999999999999999999999986 3346788899999999887765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhc-hhhhhHHHHHHHHHHH
Q 040051 160 NILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIS-TRKTSVLNWIASAINT 238 (590)
Q Consensus 160 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g-~k~~~~~~~~~~~~~i 238 (590)
...+.-...+.....+.+..+++.++.+ .++-++.++.+..+...++ ++..-+++.+.+-+.+
T Consensus 87 ~iif~lf~~~vVM~AGags~~~e~~~lP----------------~wiGali~i~~v~i~lfl~~vegi~tvn~iI~P~LI 150 (349)
T COG3949 87 IIIFFLFSTAVVMLAGAGSLLEEMFGLP----------------YWIGALIIILLVLILLFLGRVEGIITVNGIITPFLI 150 (349)
T ss_pred HHHHHHHHHHHHHhccchhHHHHHhCcc----------------HHHHHHHHHHHHHHHHHHhcccceeeeheeHHHHHH
Confidence 5544444444344444444777777653 2244466666666666666 6666666666555444
Q ss_pred HHHHHHHHhhhccccCCCCC--CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHH
Q 040051 239 VVILFVIIVGFAHADASNLK--PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCL 316 (590)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l 316 (590)
+.+..+.....+....+..+ .....+|..-..+ ...+-.....-....+++|+|++ |+..+|-..+-++.+++..+
T Consensus 151 i~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~-Y~alNi~~~~avLv~lg~~~~~~-~~~~~g~l~gglIlgvl~~l 228 (349)
T COG3949 151 IILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG-YGALNILVAVAVLVPLGGRMESR-KVSGIGGLIGGLILGVLLFL 228 (349)
T ss_pred HHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh-hhhHHHHhHhHhhhhhccccccc-chhhhhhhhhhHHHHHHHHH
Confidence 43222222211111111111 1111223211111 11111223444556777999995 77889999998888988888
Q ss_pred HHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 317 MALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALG 370 (590)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 370 (590)
....+....| +-...+-|...+..... +....++.+.+.....++..+.+++
T Consensus 229 ~nlsLi~~~~-~v~~~dIP~l~i~~~~~-~~i~lvm~vIi~~~IytT~vg~iy~ 280 (349)
T COG3949 229 INLSLIALYD-KVVNYDIPLLTIAKNFS-PLIGLVMSVIIWLEIYTTTVGLIYG 280 (349)
T ss_pred HHHHHHhhcc-hhhccCCcHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888776655 33345679988888776 5566677777777777777666554
No 62
>PF13906 AA_permease_C: C-terminus of AA_permease
Probab=99.01 E-value=5.9e-10 Score=77.21 Aligned_cols=51 Identities=47% Similarity=0.872 Sum_probs=49.4
Q ss_pred cccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhccc
Q 040051 514 WGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 514 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
||+|++|++|++++..|++++.+++..+|+.+++|+++|++.|+.|++||+
T Consensus 1 F~vP~vP~~P~~si~~ni~Lm~~L~~~twirf~iWl~iGl~iYf~YG~~hS 51 (51)
T PF13906_consen 1 FKVPLVPFLPALSILINIYLMAQLSALTWIRFGIWLAIGLVIYFGYGIRHS 51 (51)
T ss_pred CCCCcccHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHheeeecC
Confidence 689999999999999999999999999999999999999999999999985
No 63
>PRK11017 codB cytosine permease; Provisional
Probab=98.93 E-value=3.8e-05 Score=80.23 Aligned_cols=219 Identities=10% Similarity=0.019 Sum_probs=119.0
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhhHHHh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAG-GSFAYLRIEL 149 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~G-g~y~~~~~~~ 149 (590)
.+|+ +.++.+..-++..+....+..-+.. ...-+.. ++++.+++.++........+-.+ |+.| ......+..|
T Consensus 7 ~~r~-~~~~~~~~~~g~~~~~~~~~~g~~l-~~GLs~~~ai~aiilG~~i~~~~~~l~~~~G---~k~G~~~~v~sR~~F 81 (404)
T PRK11017 7 SARK-GVLSLTMVMLGFTFFSASMWAGGTL-GTGLSFVDFLLAVLIGNLLLGIYTAALGYIG---AKTGLSTHLLARFSF 81 (404)
T ss_pred HHhc-chHhHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hccCcCHHHHHHHHh
Confidence 3455 7888766555544333333222222 1102222 66666666655444444444444 4444 3566777899
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
|...+.+.+....+..+...+......+..+...++.+. ....+++.++.......|.|...++
T Consensus 82 G~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~~~~----------------~~~~~i~~~l~~~~~~~G~~~i~~~ 145 (404)
T PRK11017 82 GEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATGLDI----------------NLLIVLSGLLMTVTAYFGISALTIL 145 (404)
T ss_pred chhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888888777777776667666666666665543211 1233344555666778889999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc-CCCCCCCCCCChhhHHHHHHHHH-HhhcchhhhhhhhhhccCCCCchhhHHHHHH
Q 040051 230 NWIASAINTVVILFVIIVGFAHAD-ASNLKPFLPFGSEGIFKAAAVVY-FAYGGFDNIATMAEETKNPSRDIPIGLLGSM 307 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~ 307 (590)
+++.....++..+...+..+.+.+ .+......+.+...+..++...+ +...+.-..+.++...|++++ .-.+...+.
T Consensus 146 ~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~-~~~~~~lg~ 224 (404)
T PRK11017 146 SRIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKI-AVLATMVAF 224 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccc-eeehhHHHH
Confidence 988777666655444433333221 11111111222233444433322 223455667788888888654 335555555
Q ss_pred HHHHH
Q 040051 308 SMITI 312 (590)
Q Consensus 308 ~~~~~ 312 (590)
.+...
T Consensus 225 ~i~~~ 229 (404)
T PRK11017 225 FLGNS 229 (404)
T ss_pred HHHHH
Confidence 44443
No 64
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=98.82 E-value=5.7e-05 Score=77.79 Aligned_cols=330 Identities=15% Similarity=0.093 Sum_probs=178.8
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhH
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLR 146 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~ 146 (590)
..++.+|+.++++.+.+=.+.+.-.+.+..-+......-++. ++++.+++-++....+..-+..++++-.+ .-.-.+
T Consensus 33 P~~~~~rtWg~~~~~~~W~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIp--Fpv~~R 110 (497)
T COG1953 33 PTPAEQRTWGWWNYFALWLGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIP--FPVLSR 110 (497)
T ss_pred CCccccCcchHHHHHHHHHHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCC--chHHHH
Confidence 445668999999999887776655555555554444422344 77777777777777666666666654322 344566
Q ss_pred HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccc---cccccccCchhHHHHHHHHHHHHHHhhch
Q 040051 147 IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIH---TNLREGYNLLDPIAVAVLATAATIASIST 223 (590)
Q Consensus 147 ~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 223 (590)
..||-..+-.-...-.+.-+......+...+..++.++...-+.+... .+.........+..+++-++-..+...|+
T Consensus 111 aSFGi~Ga~~p~l~R~i~A~~WyGvqty~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~ 190 (497)
T COG1953 111 ASFGIYGANFPALIRAIVAIVWYGVQTYAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGM 190 (497)
T ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCH
Confidence 788876665555554454555555555555555555443211111111 00111111122333444455566667899
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC----CC---hhhHHHHHHHH-HHhhcchhhhhhhhhhccCC
Q 040051 224 RKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLP----FG---SEGIFKAAAVV-YFAYGGFDNIATMAEETKNP 295 (590)
Q Consensus 224 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~----~g---~~~~~~~~~~~-~~~~~G~e~~~~~a~E~k~p 295 (590)
+...|++.+...+..+..+.+.+-...+.+..+...-.| .+ +..++.+.... -+-=+..-.....+.+.|+|
T Consensus 191 ~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~~~v~~~Atl~lN~~DFsRfa~s~ 270 (497)
T COG1953 191 ESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIAAWVGFWATLALNIPDFTRFAKSQ 270 (497)
T ss_pred HHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCchhhcccCCh
Confidence 999999999999999888888888777665532221111 11 12222222111 11113344566777788876
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCC---CcHHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHhhhch
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDP---NAAYSVAFQRVGMKWAKY-LVALGALKGMTTVLLVGALGN 371 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~ 371 (590)
|+.-++-+.++-+...+.-+..++..... +.+.. -.| .++..+........ +..+..+++.+++..+.-..+
T Consensus 271 -~~~~~gq~~gLPv~~~l~~ligvv~tsa~--~~lyG~~~w~P-~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vs 346 (497)
T COG1953 271 -KAQIWGQLVGLPVNFALFSLIGVVVTSAS--YILYGETIWDP-LDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVS 346 (497)
T ss_pred -hhhhhccchhhhHHHHHHHHHHhhHHHHH--HHhhCcccCCH-HHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCC
Confidence 45556655555555555544444432211 11111 123 45555555444443 666666666666554443333
Q ss_pred hHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 040051 372 ARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF 415 (590)
Q Consensus 372 sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~ 415 (590)
+-. .++ +.+||.... | ++-+++++++.++.-.
T Consensus 347 p~~--D~s--~l~Pk~in~---k-----rg~liaA~ial~~~PW 378 (497)
T COG1953 347 PGY--DLS--ALFPKYINI---K-----RGGLIAAIIALLICPW 378 (497)
T ss_pred hHH--HHH--Hhcccccch---h-----hhHHHHHHHHHHHcCh
Confidence 322 222 567776653 2 3466677777555444
No 65
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.80 E-value=0.00019 Score=77.15 Aligned_cols=287 Identities=13% Similarity=0.046 Sum_probs=157.5
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHH-HHHH---HHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAI-VLSY---VASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
.|+++++-..+-..+..++.+.+......... .|... +.+. ....+.....+.-+.++.++. +.-...+|.++.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~l~~R 117 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYK-YGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY-NAVTLNDMLRAR 117 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58888887777776777776666555544444 45432 1111 111111122333344555554 344688999999
Q ss_pred hchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 149 LGDF-AAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 149 ~g~~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
+|+. ...+.+....+..+...+....+.+..++..++.+. ...+.+..++.......-|.|...
T Consensus 118 yg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~gi~~---------------~~~iii~~~iv~iYt~~GGl~av~ 182 (483)
T PRK09442 118 YQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATGISY---------------ETGLLIFGITVALYTAFGGFRAVV 182 (483)
T ss_pred hCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHHHHHHhccHHHHH
Confidence 8854 566666666666666777777888888888776421 112222333445566677888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-------------cCCCCCCCCCCChh--hHHHH-HHHHHHhhcchhhhhhhhhh
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHA-------------DASNLKPFLPFGSE--GIFKA-AAVVYFAYGGFDNIATMAEE 291 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~~--~~~~~-~~~~~~~~~G~e~~~~~a~E 291 (590)
+...+-.++.++..+++.+..+... +++.+.+..+.++. ..... .........+.....+-.=.
T Consensus 183 ~TD~iQ~~i~~~~~~vi~~~~~~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~a 262 (483)
T PRK09442 183 LTDALQGIVMLVGTVILLIGVIHAGGGLENAVQTLQAIDPQLVTPQGADDILSPPFMTSFWILVCFGVIGLPHTAVRCMS 262 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCccccCCCCCCccccHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 8777766666555444433222211 11111111111111 11111 11112222333333334444
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHH---hhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhh
Q 040051 292 TKNPSRDIPIGLLGSMSMITIIYCLMALSL---CVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGA 368 (590)
Q Consensus 292 ~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 368 (590)
.||+ |+..|+..++.+....+++...+.- ....|. ..+++..++....+..++++..++..+++.+.+++..+.+
T Consensus 263 aks~-~~a~~~~~~~~~~~~~~~~~~~~~G~~~~~~~p~-~~~~~~~~p~l~~~~lp~~l~gl~~a~~~aA~mST~~s~l 340 (483)
T PRK09442 263 YKDS-KALHRGIIIGTIVVGFLMFGMHLAGALGRAVLPD-LTVPDKVIPTLMLKVLPPFAAGIFLAAPMAAIMSTVDSQL 340 (483)
T ss_pred cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCccchHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7775 6788888888776666655443321 112332 2234455666677777788888888888888888888877
Q ss_pred hchhHHHHHHHhc
Q 040051 369 LGNARYTTHIARA 381 (590)
Q Consensus 369 ~~~sR~l~~~ard 381 (590)
.+.+-. ++||
T Consensus 341 ~~~ss~---~~~D 350 (483)
T PRK09442 341 LQSSST---IIKD 350 (483)
T ss_pred HHHHHH---HHHH
Confidence 766554 3455
No 66
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=98.73 E-value=5.1e-10 Score=117.82 Aligned_cols=355 Identities=14% Similarity=0.111 Sum_probs=200.9
Q ss_pred ccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhccc---ccccchhhhHHHh
Q 040051 74 RCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIP---VAGGSFAYLRIEL 149 (590)
Q Consensus 74 r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P---~~Gg~y~~~~~~~ 149 (590)
|+-|.++..+..++.++|+|++..|.... + +|.. .++..++.+++...+...+.|.....+ +.-...+-+++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~-~-~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFA-Q-SGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHH-H-hhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 46789999999999999999998887664 3 6764 777788888888889999999988775 3334444557899
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
||..++++.....+.....+..+....++.+..+++....... .. ...+.++..++..-+. -.|....+
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~------~~---~~~~~~i~~~i~~pls--~~~~l~~l 147 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLF------IS---RYVWIIIFALIVLPLS--FLKNLKSL 147 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccccc------cc---cccccccccccccccc--ccchhhHH
Confidence 9999999988888877777777777777777766654221100 00 1111111122222121 22333333
Q ss_pred HHHHHHHHHHHHH--HHHHhhhc-c--ccCCCCC---CCCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCC--ch
Q 040051 230 NWIASAINTVVIL--FVIIVGFA-H--ADASNLK---PFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSR--DI 299 (590)
Q Consensus 230 ~~~~~~~~i~~~~--~~~i~~~~-~--~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r--~~ 299 (590)
........+..+. .+.+.... . .+..+.. ...+..+.++..++....++|.+......+.+|+|+|+| ++
T Consensus 148 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~ 227 (409)
T PF01490_consen 148 RYLSILGLFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKM 227 (409)
T ss_pred HHHhhhhhhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCcccccc
Confidence 3322222222211 11111111 1 1111111 112234567888999999999999999999999999864 45
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChh-HHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 040051 300 PIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMK-WAKYLVALGALKGMTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 300 p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 378 (590)
.|+...+..++.++|.+..+......+.+. + + .+..+.... +...+..+...+..+.+.--..+...+.+...
T Consensus 228 ~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~-~--~---~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~ 301 (409)
T PF01490_consen 228 KKVLSISMIICFIIYLLFGIFGYLAFGDSV-Q--G---NILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENL 301 (409)
T ss_pred ceeeeehhhhhhHHhhhhhhcccceeeeee-c--c---hhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhh
Confidence 699999999999999999988776665432 1 1 222222222 33344444444444444333344444444443
Q ss_pred HhcC--CCchhhhccCCCCCCchHHH-HHHHHHHHHH-HHHhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhhhcc
Q 040051 379 ARAH--MIPPWFALVHPKTGTPINAN-LLIVLASALI-ALFSGLDILSALLSLST--LFVFMMMAVALLVRRYYVR 448 (590)
Q Consensus 379 ard~--~lP~~f~~~~~~~~~P~~ai-~~~~~~~~~~-~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~r~~~~ 448 (590)
-+.. ..++ ..+..++.+.....+ ....+++.++ ....+++.+.++.+... .+.|++..+.+++.+++++
T Consensus 302 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~ 376 (409)
T PF01490_consen 302 LFKRAASSRD-SPKNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKR 376 (409)
T ss_pred eecccccccc-ccccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccc
Confidence 3221 0000 000000000011111 1111122222 22367777777776543 5667777777776655543
No 67
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.65 E-value=0.00022 Score=75.60 Aligned_cols=242 Identities=10% Similarity=0.044 Sum_probs=124.6
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccCh--H-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGP--A-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAY 144 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~--~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~ 144 (590)
+.++.+|+.++++.+.+=++..+....+..-.... . .|. . ++++.+++.++........+..+.++-. .....
T Consensus 6 pvp~~~R~~~~~~~~~~W~~~~~~v~~~~~Ga~l~-~-~GLs~~~ailai~lG~~i~~~~~~l~~~~G~r~Gl--~~~v~ 81 (442)
T TIGR00800 6 PVKEEERTWSFLNYFSLWLGAAFNIATWAIGALGL-P-LGLSWWQSVIAIILGNLLGGIFVALNSRAGAKYGL--PFPVL 81 (442)
T ss_pred CCCcccCCccHHHHHHHHHHHhhhHHHHHHHHHHH-h-cCCcHHHHHHHHHHHHHHHHHHHHHhhhhHHHhCC--Ccchh
Confidence 33445677899999888777665544333322222 2 332 2 5566666655555544444555544332 36777
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHH-HH-HHHhhc
Q 040051 145 LRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLAT-AA-TIASIS 222 (590)
Q Consensus 145 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~i~~~g 222 (590)
.+..||...+.+.+...++..+...+..+...++.++..++.-.+.+. +.+.+......+..++... .. +....|
T Consensus 82 sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~---~~~~~~t~~~~~~~~i~~~l~~~~~~~~g 158 (442)
T TIGR00800 82 SRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYL---HLGNGMTTLELICFIIFWALVLVFLFFFG 158 (442)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhccccc---ccCCcccHHHHHHHHHHHHHHHHHHHcCH
Confidence 788999999998888888888888888888888777666543211100 0010000011222222222 22 234556
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCC-CCC----CCCCChhhHHHHHHHHH-HhhcchhhhhhhhhhccCCC
Q 040051 223 TRKTSVLNWIASAINTVVILFVIIVGFAHADASN-LKP----FLPFGSEGIFKAAAVVY-FAYGGFDNIATMAEETKNPS 296 (590)
Q Consensus 223 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~-~~~----~~~~g~~~~~~~~~~~~-~~~~G~e~~~~~a~E~k~p~ 296 (590)
.|...+.+.......++.+..++.......+..+ ... ..+.+...++.++..++ +...+....+.++...|+++
T Consensus 159 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~~~~ 238 (442)
T TIGR00800 159 YKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGKSKK 238 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcCCcc
Confidence 6665555555554444443333322221111111 111 11222334444444332 23345567788888888864
Q ss_pred CchhhHHHHHHHHHHHHHHHH
Q 040051 297 RDIPIGLLGSMSMITIIYCLM 317 (590)
Q Consensus 297 r~~p~a~~~~~~~~~~~y~l~ 317 (590)
+..++...+.....+...+.
T Consensus 239 -~~~~~~~~~~~~~~~~~~~~ 258 (442)
T TIGR00800 239 -TAIWGQFLALPGGFTLTCFF 258 (442)
T ss_pred -chHHHHHHHHHHHHHHHHHH
Confidence 44555555555544444333
No 68
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.61 E-value=0.0014 Score=70.43 Aligned_cols=283 Identities=12% Similarity=0.032 Sum_probs=142.4
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhc-chHhHhhccChHHHHHHHHHHHH-HHHHHHHHHHhhhccc----ccccchhhhH
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVL-TGQEAHKHAGPAIVLSYVASGVS-AMLSVFCYTEFAIEIP----VAGGSFAYLR 146 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~-~~~~~~~~~G~~~~~~~ll~~~~-~~~~a~~~ael~~~~P----~~Gg~y~~~~ 146 (590)
.|+++++-..+-..+..++...+.. ++... . .|....+.. ++..+ .+...+.+++--+++. ..-..++|.+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y-~-~G~~~~~~~-~g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~ 111 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALY-V-TGLSELWIA-IGLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFE 111 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHH-H-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHH
Confidence 5788888776555555555444443 33333 3 455432222 12222 2223344444333222 2334799999
Q ss_pred HHhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhch
Q 040051 147 IELGD---FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIST 223 (590)
Q Consensus 147 ~~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 223 (590)
+.+|+ ....+.+....+......+....+.+..++..++.+. ...+.+...+.......-|.
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~gi~~---------------~~~iii~~~i~~~Yt~~GGl 176 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFGLDY---------------KTGLLIGALIIVIYTFFGGF 176 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccH---------------HHHHHHHHHHHHHHHHhhhH
Confidence 99984 4555555555555555666677777777777765321 11222333445566667788
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------CCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhh
Q 040051 224 RKTSVLNWIASAINTVVILFVIIVGFAHAD-------------ASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAE 290 (590)
Q Consensus 224 k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-------------~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~ 290 (590)
|...+...+=.++.++..+++.+..+.+.+ ++..+.+.+..+..+...+.. ...+.|.....+-.-
T Consensus 177 ~av~~TD~iQ~~i~~~~~~~v~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~p~~~qR~~ 255 (487)
T TIGR02121 177 LAVSWTDFVQGLLMFFALVLVPIVALFNLGGFGETLSAVAAINPHLLDMFKGASVIAIISLLAW-GLGYFGQPHIIVRFM 255 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhCccccCCCCCCCHHHHHHHHHH-HHHhccchHHHHHHH
Confidence 888887776666665544433333222211 111111111122222221111 112223222222223
Q ss_pred hccCCCCchhhHHHHHHHHHHHHHHHHHH----HHhh--cccCCC-CCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Q 040051 291 ETKNPSRDIPIGLLGSMSMITIIYCLMAL----SLCV--MQPYTD-IDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTV 363 (590)
Q Consensus 291 E~k~p~r~~p~a~~~~~~~~~~~y~l~~~----~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 363 (590)
-.||+ |+..|+...+.....+.++...+ .... ..|..+ .+++..++.......+++..-++..+++.+.+++
T Consensus 256 aaks~-k~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~p~~~~~~~d~~~~~~~~~~~p~~l~gl~~a~ilaA~mST 334 (487)
T TIGR02121 256 AIRSH-KELPKARRIGMSWMILSLLGAIAVGLTGIAYFNKNPHVELVDRETIFIVLSQILFHPWIAGILLAAILAAIMST 334 (487)
T ss_pred hcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccccCCCcchhHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 35664 67778877765443322221111 1111 112111 1234455666666667887788888888888888
Q ss_pred HHHhhhchhHHH
Q 040051 364 LLVGALGNARYT 375 (590)
Q Consensus 364 ~~~~~~~~sR~l 375 (590)
..+.+.+.|-.+
T Consensus 335 ~~s~l~s~ss~~ 346 (487)
T TIGR02121 335 ISSQLLVSSSAL 346 (487)
T ss_pred HHHHHHHHHHHH
Confidence 888888777654
No 69
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.60 E-value=0.00017 Score=75.82 Aligned_cols=284 Identities=13% Similarity=0.013 Sum_probs=161.6
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch-
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD- 151 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~- 151 (590)
.|+++++...+-..+..++.+.+......... .|...++..+...+..+..+..+.+.-++.+ .-..++|.++.+|+
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~T~~e~l~~Ryg~~ 79 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYA-YGFAIGFYELGALVLLIILGWLFVPIFINNG-AYTMPEYLEKRFGKR 79 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCchhHHHHHHhCch
Confidence 47888888887777777776666655555444 5644333223233334455666666655544 44689999999998
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
....+.+....+..+...+....+.+..++..++.+. ...+.+...+.......-|.|...+...
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~gi~~---------------~~~~ii~~~i~~~Yt~~GG~~av~~Td~ 144 (407)
T TIGR00813 80 ILRGLSVLSLILYIFLYMSVDLFSGALLIELITGLDL---------------YLSLLLLGAITILYTVFGGLKAVVWTDT 144 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchH---------------HHHHHHHHHHHHHHHHHcchHHHHHHHH
Confidence 5667777777788888888888888888888876431 1122233334445566678888888777
Q ss_pred HHHHHHHHHHHHHHHhhhcccc-------------C------CCCCC-CCCCC-hhhH---HHHHHHH-HHhhcchhhhh
Q 040051 232 IASAINTVVILFVIIVGFAHAD-------------A------SNLKP-FLPFG-SEGI---FKAAAVV-YFAYGGFDNIA 286 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~~~-------------~------~~~~~-~~~~g-~~~~---~~~~~~~-~~~~~G~e~~~ 286 (590)
+=.++.++..+++.+..+.+.+ + +++.. ..+.. ...+ ..+.... .+.+ .-....
T Consensus 145 iQ~~i~~~~~i~~~~~~~~~~GG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-~~~~~~ 223 (407)
T TIGR00813 145 IQAVIMILGTFILPVFAFSEVGGLGTFVEKASQAAPTNPSPDDLYDFFRDPSTSDLPWGAGVFGLPHVALWYW-TNQVIV 223 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCCCccchhhhccCCCCCcccCCChHHHHhChHHHHHHHh-cCHHHh
Confidence 6666655544433333322111 0 00000 00000 0011 0111111 1111 111112
Q ss_pred hhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHH-Hh--hccc----CCC----CCCCcHHHHHHHHhChhHHHHHHHHH
Q 040051 287 TMAEETKNPSRDIPIGLLGSMSMITIIYCLMALS-LC--VMQP----YTD----IDPNAAYSVAFQRVGMKWAKYLVALG 355 (590)
Q Consensus 287 ~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~-~~--~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~ 355 (590)
+-.=-.|| +|+..|+...+.+...+++++..+. +. ...| ..+ .+.+..++.......+++..-++.++
T Consensus 224 qR~~a~ks-~~~~r~~~~~~~~~~~~~~~~~~l~G~~a~~~~~~~~p~~~~~~~~~~~~~~p~~~~~~lp~~l~gl~~ag 302 (407)
T TIGR00813 224 QRCLAAKS-AKHAKKGCLISGVLKLLPMFGAVLPGLIARALYTDIDPALAGAVNQNSDQAYPLLVQELMPPGLAGLFLAA 302 (407)
T ss_pred hHHHhcCC-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccChhhhcccCCChhhHHHHHHHHHcCcchHHHHHHH
Confidence 22333566 4788899988877666655443322 11 1122 111 13345666667777778888888888
Q ss_pred HHHHHHHHHHHhhhchhHHH
Q 040051 356 ALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 356 ~~~~~~~~~~~~~~~~sR~l 375 (590)
++.+.+++..+.+.+.+-.+
T Consensus 303 ilaA~mST~~s~l~a~ss~~ 322 (407)
T TIGR00813 303 ILAAVMSTLSSQLNSASTVF 322 (407)
T ss_pred HHHHHHHhhhhhHHHHHHHH
Confidence 88888888888887776664
No 70
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.54 E-value=0.0024 Score=68.37 Aligned_cols=284 Identities=11% Similarity=-0.007 Sum_probs=156.2
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHH-HHHH---HHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAI-VLSY---VASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~-~~~~---ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
.|+++++....-.++..++.+.+......... .|... .+.+ ..+.+.....+.-+.++.++. +.-..++|.++.
T Consensus 39 gr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~T~~e~l~~R 116 (471)
T TIGR02119 39 GRSMGGFVLAMTLVATYGSASSFIGGPGIAYN-YGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKY-NAITINDVLKAR 116 (471)
T ss_pred CCcccHHHHHHHHHHHHhhHHHHcCcHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccHHHHHHHH
Confidence 58899998888877777877666655544444 45431 1111 111111111233344444443 344688999999
Q ss_pred hch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 149 LGD-FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 149 ~g~-~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
+|+ ....+.+....+...........+.+..++..++.+. ...+.+..++.......-|.|...
T Consensus 117 yg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~gi~~---------------~~~iii~~~iv~iYt~~GG~~av~ 181 (471)
T TIGR02119 117 YNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTGLSY---------------LTALFIFSSSVLIYTTFGGFRAVA 181 (471)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHhhhHHHHH
Confidence 994 4566666666665555666667777777777775421 112222333355566667888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccc-cC------------CCCCCCCCCChh--hHHHHH-HHHHHhhcchhhhhhhhhh
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHA-DA------------SNLKPFLPFGSE--GIFKAA-AVVYFAYGGFDNIATMAEE 291 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~-~~------------~~~~~~~~~g~~--~~~~~~-~~~~~~~~G~e~~~~~a~E 291 (590)
+.+.+-.++.++..+++.+..+... +. +...++.+.++. .+...+ ....+...+.....+-.-.
T Consensus 182 ~td~iQ~~v~~~~~~~~~~~~l~~~gG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~~R~~a 261 (471)
T TIGR02119 182 LTDAIQGIVMFTGTTILLIAVIKAGGGVEKIMEKLKDIDPNLITPFGGDGGLTKPFVASFWILVGIGVIGLPQTAVRCMS 261 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhcCccccCCCCCCcchhhhHHHHHHHHHHHHHhCchHHHHHHHh
Confidence 8877777666655544443333321 11 111111111211 111111 1112222333333445556
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHHHHH-hh-cccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 292 TKNPSRDIPIGLLGSMSMITIIYCLMALSL-CV-MQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGAL 369 (590)
Q Consensus 292 ~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 369 (590)
.||+ |+..|+...+.+....+++...+.- .. ...++..+++..++....+..+++..-++..+++.+.+++..+.+.
T Consensus 262 ak~~-~~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~d~~~p~~~~~~lp~~~~gl~~a~llaA~mST~~s~l~ 340 (471)
T TIGR02119 262 YKDS-KAMHRAMIIGTIVVGIIMLGMHLAGVLGRAVIPDLTVPDKVIPLLAIKVLPPILAGIFLAAPMAAIMSTVNSLLL 340 (471)
T ss_pred cCCH-HHHhhhHhHHHHHHHHHHHHHHHHHHhhhhhccCCCCccchHHHHHHHHchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7774 7888999888776666655443331 11 1122222335556666666667888888888888888888888777
Q ss_pred chhHH
Q 040051 370 GNARY 374 (590)
Q Consensus 370 ~~sR~ 374 (590)
+.+-.
T Consensus 341 ~~ss~ 345 (471)
T TIGR02119 341 QSSST 345 (471)
T ss_pred HHHHH
Confidence 77655
No 71
>PRK10484 putative transporter; Provisional
Probab=98.44 E-value=0.0049 Score=66.85 Aligned_cols=293 Identities=12% Similarity=-0.018 Sum_probs=141.8
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDF 152 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~ 152 (590)
.|+++++-..+-..++.+++..+......... .|...........+...+.++.++.--.+. ..-..++|.++.+|+.
T Consensus 37 gR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Ryg~~ 114 (523)
T PRK10484 37 GRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYA-SGMSVMAWEVTAAIALIILALIFLPRYLKS-GITTIPDFLEERYDKT 114 (523)
T ss_pred CCCCchHHHHHHHHHHHhhHHHHhcchHHHHH-hCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHhcCch
Confidence 68899988776666666766666555444333 565432111122222333444444433332 2335788999999987
Q ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHH--HHHHHHHHHHhhchhhhhHH
Q 040051 153 AAFITAGNILLESIVG-GAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAV--AVLATAATIASISTRKTSVL 229 (590)
Q Consensus 153 ~g~~~g~~~~l~~~~~-~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~g~k~~~~~ 229 (590)
.....+..+.+.+... .+......+..++..++...- .+.+... ...+.+ +.++.......-|.|...+.
T Consensus 115 ~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~-----~gi~~~~--~~~~~~~~~~~i~~~Yt~~GGl~aV~~T 187 (523)
T PRK10484 115 TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSEL-----LGISYGA--AIWLLVWLIGIIGAIYAVFGGLKAVAVS 187 (523)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhh-----cCCcHHH--HHHHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6666666555555443 233333333334443321100 0000000 011111 12233455556788888887
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc---------------cCCCCCCCCC----CChhhHHHHHHHH-HHhhcchhhhhhhh
Q 040051 230 NWIASAINTVVILFVIIVGFAHA---------------DASNLKPFLP----FGSEGIFKAAAVV-YFAYGGFDNIATMA 289 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~---------------~~~~~~~~~~----~g~~~~~~~~~~~-~~~~~G~e~~~~~a 289 (590)
..+=.++.++..+++.+..+... +++.+..+.+ ..+...+.+.... ++.+.+-....+-.
T Consensus 188 D~iQ~vim~i~~iiv~~~~l~~~g~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~qR~ 267 (523)
T PRK10484 188 DTINGIGLLIGGLLVPVFGLIALGDGSFMQGLEQLTTVHPEKLNSIGGATDPVPFPTLFTGLILVNLFYWCTNQSIVQRA 267 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCccHHhHHHHHhhcCchhhcccCCCCCCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 76666655554433322221110 1111111111 1122222222221 11121212222333
Q ss_pred hhccCCCCchhhHHHHHHHHHHHHHHHHH---HHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Q 040051 290 EETKNPSRDIPIGLLGSMSMITIIYCLMA---LSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLV 366 (590)
Q Consensus 290 ~E~k~p~r~~p~a~~~~~~~~~~~y~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 366 (590)
=-.||+ |+..|+...+.....+.++... +......|.+..+++..++.......++++.-++..+++.+.+++..+
T Consensus 268 ~aak~~-k~a~~~~~~~~~~~~~~~~~~~~~G~~a~~~~p~~~~~~d~~~p~~~~~~lp~~l~Gl~~a~ilAA~mST~~s 346 (523)
T PRK10484 268 LGAKNL-AEGQKGALLAAFFKLLGPLILVLPGIIAFHLYGDGLPNADMAYPTLVNDVLPVPLVGFFAAVLFGAILSTFNG 346 (523)
T ss_pred HhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCChhhHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHH
Confidence 335664 6777888777655544443322 122222333222345566666666677777778888888888888888
Q ss_pred hhhchhHHH
Q 040051 367 GALGNARYT 375 (590)
Q Consensus 367 ~~~~~sR~l 375 (590)
.+.+.|-.+
T Consensus 347 ~l~s~st~~ 355 (523)
T PRK10484 347 FLNSASTLF 355 (523)
T ss_pred HHHHHHHHH
Confidence 887776653
No 72
>PRK00701 manganese transport protein MntH; Reviewed
Probab=98.43 E-value=0.0021 Score=67.55 Aligned_cols=68 Identities=9% Similarity=-0.034 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHhhhccc-ccc-cchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 040051 119 VSAMLSVFCYTEFAIEIP-VAG-GSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNR 186 (590)
Q Consensus 119 ~~~~~~a~~~ael~~~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~ 186 (590)
++..+.+..+-|++.|.- .+| |.-+-.++.+|+.++++......+........+..+.+.-++.+++.
T Consensus 72 lls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~gi 141 (439)
T PRK00701 72 LLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFGI 141 (439)
T ss_pred HHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 344455667777777766 344 78888899999999887766666666777777777766666665543
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.41 E-value=0.0056 Score=66.04 Aligned_cols=283 Identities=10% Similarity=-0.031 Sum_probs=138.8
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHH-HHHHHHHH-Hhh---hcccccccchhhhHH
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSA-MLSVFCYT-EFA---IEIPVAGGSFAYLRI 147 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~a-el~---~~~P~~Gg~y~~~~~ 147 (590)
.|+++++-..+-..+..++...+......... .|....+. .++..+. +.....++ .+- .+....-..++|.++
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~-~G~~~~~~-~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~ 116 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFL-SGISESWI-AIGLTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTG 116 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHH-cCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHH
Confidence 58899988877666666766555544443333 56543222 1222222 11111111 111 112234467899999
Q ss_pred Hhch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchh
Q 040051 148 ELGD---FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTR 224 (590)
Q Consensus 148 ~~g~---~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 224 (590)
.+|+ ....+.+....+......+....+.+..++..++.+. ...+.+...+.......-|.|
T Consensus 117 Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~gi~~---------------~~~iii~~~iv~iYt~~GGl~ 181 (502)
T PRK15419 117 RFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFGMSY---------------ETALWAGAAATILYTFIGGFL 181 (502)
T ss_pred HhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHHHHHHhhhHH
Confidence 9984 4555566656666666666767777777777765321 112333334555666677888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhcc-cc------------CCCCCCCCCCChhhHHHHHHHHHHhhcchhhhhhhhhh
Q 040051 225 KTSVLNWIASAINTVVILFVIIVGFAH-AD------------ASNLKPFLPFGSEGIFKAAAVVYFAYGGFDNIATMAEE 291 (590)
Q Consensus 225 ~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~------------~~~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E 291 (590)
...+...+=.++.++..+++.+..+.. ++ .++.....+.++..+. +.......+.|.....+-.--
T Consensus 182 aV~~TD~iQ~~imi~g~i~~~~~~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~p~~~qR~~a 260 (502)
T PRK15419 182 AVSWTDTVQASLMIFALILTPVIVIISVGGFGDSLEVIKQKSIENVDMLKGLNFVAII-SLMGWGLGYFGQPHILARFMA 260 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhcCccccCcccCCCHHHHH-HHHHHHHHHcCChHHHHhhee
Confidence 888877776666655444333322221 11 1111111111122222 111112223333222222223
Q ss_pred ccCCCCchhhHHHH----HHHHHHHHHHHHHHHHhh--cccCC----CCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHH
Q 040051 292 TKNPSRDIPIGLLG----SMSMITIIYCLMALSLCV--MQPYT----DIDPNAAYSVAFQRVGMKWAKYLVALGALKGMT 361 (590)
Q Consensus 292 ~k~p~r~~p~a~~~----~~~~~~~~y~l~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 361 (590)
.||+ |++.++... .........++....... ..|.. +.+++..+.........+++.-++..+++.+.+
T Consensus 261 ak~~-~~~~~a~~~~~~~~~~~~~~~~~ig~~~~~~~~~~p~~~~~~~~~~d~~~~~l~~~~lp~~l~gl~~a~ilAA~m 339 (502)
T PRK15419 261 ADSH-HSIVHARRISMTWMILCLAGAVAVGFFGIAYFNEHPAVAGAVNQNAERVFIELAQILFNPWIAGILLSAILAAVM 339 (502)
T ss_pred cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCCCcchHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 4554 333333222 111111111111111111 11210 012344566666666678888888888888899
Q ss_pred HHHHHhhhchhHH
Q 040051 362 TVLLVGALGNARY 374 (590)
Q Consensus 362 ~~~~~~~~~~sR~ 374 (590)
++..+.+.+.|-.
T Consensus 340 ST~~s~l~a~ss~ 352 (502)
T PRK15419 340 STLSCQLLVCSSA 352 (502)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888887755
No 74
>PRK12488 acetate permease; Provisional
Probab=98.40 E-value=0.0037 Score=68.05 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=123.2
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHH-HHHHHHHhhhcccccccchhhhHHHhc-
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAML-SVFCYTEFAIEIPVAGGSFAYLRIELG- 150 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~-~a~~~ael~~~~P~~Gg~y~~~~~~~g- 150 (590)
.|+++++...+...+..+++..|......... .|...++ +.++..+... ..+.+++--++... -..++|.++.+|
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~-~G~~~~~-~~~g~~~g~~~~~~~~a~~lr~~g~-~T~~d~l~~Rf~s 142 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFM-NGYDGLL-YALGVLAGWPIILFLIAERLRNLGK-YTFADVVSYRLAQ 142 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChhHHH-HHHHHHHHHHHHHHHHHHHHHHCCC-cchHHHHHHHcCC
Confidence 58899999887777777776666655444444 5654332 2233333222 23445544444332 357788888888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|....+.+....+..+........+.+..++.+++.+. ...+.+..++.......-|+|...+.+
T Consensus 143 ~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~gi~~---------------~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T PRK12488 143 GPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFGISY---------------LYAVVIVGALMVLYVTFGGMLATTWVQ 207 (549)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 66888888877777777777777888888887765421 112222333444555567999988887
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc--C----------CCC-CC-CCCCC----hhhHHHHHHHHHHhhcchhhhhhhhhhc
Q 040051 231 WIASAINTVVILFVIIVGFAHAD--A----------SNL-KP-FLPFG----SEGIFKAAAVVYFAYGGFDNIATMAEET 292 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~~--~----------~~~-~~-~~~~g----~~~~~~~~~~~~~~~~G~e~~~~~a~E~ 292 (590)
.+=.++.++..+++.+..+.+.+ . +.. .. +.|.+ ...++.......+.+.|..-..+-.--.
T Consensus 208 ~iQ~~im~~~~i~~~~~~l~~~g~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~lg~~~~p~~~qR~~aa 287 (549)
T PRK12488 208 IIKAVLLLSGTSFMAFMVLKHFGFSTEAMFASAVAVHAKGQAILAPGGLLSNPIDAISLGLGMMFGTAGLPHILMRFFTV 287 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhccccchhhcCCcccccCHHHHHHHHHHHHHHhccCcHHHHHhhcC
Confidence 77666666554444333322211 0 000 00 11211 1112222222233444444444434445
Q ss_pred cCCCCchhhHHHHHHHHHHHHHH
Q 040051 293 KNPSRDIPIGLLGSMSMITIIYC 315 (590)
Q Consensus 293 k~p~r~~p~a~~~~~~~~~~~y~ 315 (590)
||+ |+..|+..++.....++|+
T Consensus 288 ks~-k~ar~s~~~~~~~~~~~~~ 309 (549)
T PRK12488 288 SDA-REARKSVLYATGFIGYFYL 309 (549)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHH
Confidence 774 7788888887655554444
No 75
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.38 E-value=3.7e-05 Score=80.75 Aligned_cols=290 Identities=17% Similarity=0.101 Sum_probs=141.9
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDF 152 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~ 152 (590)
.|+++++-..+-..+..+|.+.+......... .|....+..+...+.....++.++.--++. +.-...+|.++.+|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~-~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~T~~e~~~~Ryg~~ 82 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYS-YGISGLWYAIGYAIGFLLFALFFAPRLRRS-GAVTIPEYLEKRYGSK 82 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHH-T-GGGGHHHHHHHHHHHHHHHHTHHHHHHT-T--SHHHHHHHHT-HH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCcceeeeccccchhHHHHHHHHHHhhccc-chhhhhhhhhhhcCCc
Confidence 47888887777777777776666554444444 565433323333333333444444433332 3446889999999988
Q ss_pred h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 153 A--AFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 153 ~--g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
. ..+......+......+....+.+..++..++.+. ...+.+...+.......-|.|...+..
T Consensus 83 ~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~gi~~---------------~~~~~i~~~i~~iYt~~GGl~av~~td 147 (406)
T PF00474_consen 83 ALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFGIPY---------------NTAILIVGVIVIIYTFFGGLRAVAWTD 147 (406)
T ss_dssp H-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--H---------------HHHHHHHHHHHHHTTCTT------SHH
T ss_pred hhhhhhcccccchhhhhhhhccccccccchhhccchhh---------------hHHHHHHHHHHHHhhhhhhHhhhhHHH
Confidence 8 55655556666667778888888888888876421 112223333444455566888888776
Q ss_pred HHHHHHHHHHHHHHHHhhhccc-------------cCCCCCCCCCCCh------hhHHHHHHHHHHhhcchhhhhhhhhh
Q 040051 231 WIASAINTVVILFVIIVGFAHA-------------DASNLKPFLPFGS------EGIFKAAAVVYFAYGGFDNIATMAEE 291 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~-------------~~~~~~~~~~~g~------~~~~~~~~~~~~~~~G~e~~~~~a~E 291 (590)
.+-.++.++..+++.+..+... +++....+.|.+. ...........+...+.....+-.--
T Consensus 148 ~iQ~~i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~a 227 (406)
T PF00474_consen 148 FIQGVIMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLA 227 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHS
T ss_pred HHHHHHHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHh
Confidence 6666655554444433332211 1100111112221 10000001111222222222222223
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHH------HHHHhhccc----CCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHH
Q 040051 292 TKNPSRDIPIGLLGSMSMITIIYCLM------ALSLCVMQP----YTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMT 361 (590)
Q Consensus 292 ~k~p~r~~p~a~~~~~~~~~~~y~l~------~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 361 (590)
.||+ |+..|+...+.....+++... ........| ++..+++..++.......+++..-++..+++.+.+
T Consensus 228 ak~~-~~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ 306 (406)
T PF00474_consen 228 AKSP-KTARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIM 306 (406)
T ss_dssp SSHH-HHHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHH
T ss_pred cCCH-HHHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhh
Confidence 4554 677888777765444444331 111222222 12223345677777777778888888888888888
Q ss_pred HHHHHhhhchhHHHHHHHhcCC
Q 040051 362 TVLLVGALGNARYTTHIARAHM 383 (590)
Q Consensus 362 ~~~~~~~~~~sR~l~~~ard~~ 383 (590)
++..+.+.+.+-.+ +||=.
T Consensus 307 ST~~s~l~a~ss~~---~~Di~ 325 (406)
T PF00474_consen 307 STADSLLLAISSIF---SRDIY 325 (406)
T ss_dssp HHHHHHHHHHHHHH---HHHCC
T ss_pred HHHHHHHhhhhhhh---hHHhh
Confidence 88888888777664 57743
No 76
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=98.35 E-value=0.0027 Score=64.92 Aligned_cols=287 Identities=15% Similarity=0.049 Sum_probs=141.3
Q ss_pred CCHHHHH-HHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccccchhhhHHHhchhh
Q 040051 76 LTWWDLT-WFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIE-IPVAGGSFAYLRIELGDFA 153 (590)
Q Consensus 76 l~~~~~~-~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~-~P~~Gg~y~~~~~~~g~~~ 153 (590)
.+.+-.+ .-+.|+-+|.|-.-+.++.....||..-++-|++. ++..-.-+.++|++-= .-+.+..-.|-+ ..++..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~-~l~~GiPlli~Ef~iGr~~~~~~~~a~~~-l~~~~~ 85 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIF-LLLVGIPLLLAEFAIGRRGRKNAVGAFRK-LAPKKK 85 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHH-HHHHhHHHHHHHHHhhhhcCCChhHHHHH-hccCcc
Confidence 4444444 44677779999888888887775665534434433 3333334455565532 112222222222 221233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccc-------cc-cccccccCchhHHHHHHHHHHHHHHhhchhh
Q 040051 154 AFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLR-------IH-TNLREGYNLLDPIAVAVLATAATIASISTRK 225 (590)
Q Consensus 154 g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 225 (590)
....||.-.+......+.++...+-.+..........|. .. .+..++.......-++++++..++..+|++.
T Consensus 86 ~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV~~ 165 (439)
T COG0733 86 WEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGVKK 165 (439)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhHHh
Confidence 333444433333333333333222222222111110010 00 1111111112344456667777777888887
Q ss_pred -hhHHHHHHHHHHHHHHHHHHHhhhccccC---------CCCCCCCCCChhhHHHHHHHHHHhhc-chhhhhhhhhhccC
Q 040051 226 -TSVLNWIASAINTVVILFVIIVGFAHADA---------SNLKPFLPFGSEGIFKAAAVVYFAYG-GFDNIATMAEETKN 294 (590)
Q Consensus 226 -~~~~~~~~~~~~i~~~~~~~i~~~~~~~~---------~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~k~ 294 (590)
.-|.+.++.-...+.++++.+-.+...+. .+++.+.+ ...+..++.-++|+.. |+-....++.-.++
T Consensus 166 GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~--~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k 243 (439)
T COG0733 166 GIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTD--PKVWLAALGQAFFSLSLGFGIMITYSSYLSK 243 (439)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCc--hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 66777776666555555555544332210 11222221 3456777778888875 88888888888876
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHHHHHhhc---ccCCCCCCC----cHHHHHHHHhC-hhHHHHHHHHHHHHHHHHHHHH
Q 040051 295 PSRDIPIGLLGSMSMITIIYCLMALSLCVM---QPYTDIDPN----AAYSVAFQRVG-MKWAKYLVALGALKGMTTVLLV 366 (590)
Q Consensus 295 p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~ 366 (590)
+.|+++.-....+....+-++..+.+.-. ...+.-+.. ..++.++.+.. +.....+.....+++.++|..+
T Consensus 244 -~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 244 -KSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGADASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred -ccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 68899988888877777666655554322 222211111 14556666554 2233334444444444444444
Q ss_pred h
Q 040051 367 G 367 (590)
Q Consensus 367 ~ 367 (590)
.
T Consensus 323 m 323 (439)
T COG0733 323 M 323 (439)
T ss_pred H
Confidence 3
No 77
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=98.32 E-value=0.004 Score=64.36 Aligned_cols=311 Identities=16% Similarity=0.179 Sum_probs=167.3
Q ss_pred hhhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHH
Q 040051 87 GAVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILL 163 (590)
Q Consensus 87 ~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l 163 (590)
+.-.|+|-..-|...-.+ +|.. +.++++++++..=..+.. + .-+.||.+.=..+..||..|.+......+
T Consensus 14 amFFGAGNLIFPp~lG~~-aG~~~~~a~~GF~lTgV~lP~Lgvi----a--~~~~~~~~~~l~~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 14 AMFFGAGNLIFPPFLGQQ-AGSNWWPAMIGFLLTGVGLPLLGVI----A--VAKSGGGIEDLASRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHhCCccccchHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH----H--HhhcCCCHHHHhcccCcHHHHHHHHHHHH
Confidence 333678887777776555 7753 555666666553322211 1 12234445555556677777666533222
Q ss_pred H--HHHHHHH-HHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHH
Q 040051 164 E--SIVGGAA-VARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVV 240 (590)
Q Consensus 164 ~--~~~~~a~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~ 240 (590)
. =....+- .+.++...+..+++. +.. ....+..+++..+..++.+..-|...++-++++-+.++.
T Consensus 87 ~IGP~~aiPRtaa~sfe~~i~p~~~~-~~~-----------~~~~ifs~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~ 154 (427)
T PF05525_consen 87 SIGPLFAIPRTAAVSFEMGIAPFFPE-NSN-----------ISLLIFSIIFFAITYLLSLNPSKIVDRIGKFLTPILLIL 154 (427)
T ss_pred HHHhcccCcchhhhhHHHhhhccCCc-ccc-----------cchhhhhHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHH
Confidence 1 1111111 111221122233321 111 113466777778888888999999999999999999999
Q ss_pred HHHHHHhhhccccCCCCCC---CCCCC-hhhHHHHH----HHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHH----H
Q 040051 241 ILFVIIVGFAHADASNLKP---FLPFG-SEGIFKAA----AVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSM----S 308 (590)
Q Consensus 241 ~~~~~i~~~~~~~~~~~~~---~~~~g-~~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~----~ 308 (590)
++++++.++.+...+...+ +.++. ..|+..+- ..+...|...-..+--....||+ |+..|.+..+- .
T Consensus 155 l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iIi~~i~~~g~~~~-k~~~~~~~~ag~ia~~ 233 (427)
T PF05525_consen 155 LAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIIIINAIRQKGYKDK-KEIKKYTIKAGLIAGI 233 (427)
T ss_pred HHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHH
Confidence 9888888887643322111 11111 12222211 11223333333333333444453 34444444444 4
Q ss_pred HHHHHHHHHHHHHhhcccC--CCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCch
Q 040051 309 MITIIYCLMALSLCVMQPY--TDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPP 386 (590)
Q Consensus 309 ~~~~~y~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~ 386 (590)
...++|......-....+. ++.+....+..+.++.-++.+..++.+.+.++|+++..+...+++.....+
T Consensus 234 lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~-------- 305 (427)
T PF05525_consen 234 LLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSEL-------- 305 (427)
T ss_pred HHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 4445555544432222221 112223455666777777889999999999999999999888888776543
Q ss_pred hhhccCCCCCCchHH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040051 387 WFALVHPKTGTPINA-NLLIVLASALIALFSGLDILSALLSLSTLFVF 433 (590)
Q Consensus 387 ~f~~~~~~~~~P~~a-i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (590)
.| +.+++. +++.++++.+++-++ ++.+++++.-...+.|
T Consensus 306 -----~~--kisY~~~v~i~~i~S~~ian~G-l~~Ii~~s~PiL~~iY 345 (427)
T PF05525_consen 306 -----FP--KISYKVWVIIFTIFSFIIANLG-LDQIIKISVPILMFIY 345 (427)
T ss_pred -----hc--ccChHHHHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHh
Confidence 32 344442 333445555444443 6777777766556666
No 78
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.27 E-value=0.0047 Score=67.43 Aligned_cols=148 Identities=8% Similarity=-0.048 Sum_probs=91.9
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHH---HHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIV---LSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIEL 149 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~---~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~ 149 (590)
.|+++++....-..+..++...+......... .|...+ +++.++ ....++.+++.-++... -..++|.++.+
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~-~G~~~~~~~~g~~~~---~~~~~~~~~p~~rr~~~-~T~~e~l~~Rf 105 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAF-LGYDGLAYLMGWTGG---YVLLALLLAPYLRKFGK-YTVPDFIGDRY 105 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHH-hChHHHHHHHHHHHH---HHHHHHHHHHHHHHCCC-ccHHHHHHHHh
Confidence 58899998777777777766555544433333 464322 222222 23345666666666643 36899999999
Q ss_pred c-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhH
Q 040051 150 G-DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSV 228 (590)
Q Consensus 150 g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~ 228 (590)
| |....+.+....+......+....+.+..++.+++.+. ...+.+..++.......-|.|...+
T Consensus 106 ~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~gi~~---------------~~~iii~~~i~~iYt~~GG~~aV~~ 170 (552)
T TIGR03648 106 YSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLEVDF---------------ETGVFIGMAIVFFYAVLGGMKGVTW 170 (552)
T ss_pred CCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 8 55688887777777777777777777888887776431 1122223334455555678888887
Q ss_pred HHHHHHHHHHHH
Q 040051 229 LNWIASAINTVV 240 (590)
Q Consensus 229 ~~~~~~~~~i~~ 240 (590)
...+=.++.++.
T Consensus 171 TD~iQ~iim~ig 182 (552)
T TIGR03648 171 TQVAQYIVLIVA 182 (552)
T ss_pred HHHHHHHHHHHH
Confidence 766665555544
No 79
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.25 E-value=0.0055 Score=65.71 Aligned_cols=282 Identities=13% Similarity=0.070 Sum_probs=153.4
Q ss_pred cccCCHHHHHHHHhhhh-hc-chhhhcchHhHhhccChHHHHHHH----HHHHHHHHHHHHHHHhhhcccccccchhhhH
Q 040051 73 KRCLTWWDLTWFGFGAV-IG-AGIFVLTGQEAHKHAGPAIVLSYV----ASGVSAMLSVFCYTEFAIEIPVAGGSFAYLR 146 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~-ig-~gi~~~~~~~~~~~~G~~~~~~~l----l~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~ 146 (590)
.|+++.+ ..+++.+.. .+ ...+-.++... . .|...++..+ ...+.....+--+.+++ +.+..-..++|.+
T Consensus 37 gR~lg~~-v~~ls~~as~~s~~t~lG~~g~ay-~-~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~-~~~~~~T~~d~l~ 112 (493)
T COG0591 37 GRSLGPF-VYALSAAASDTSGWTFLGLPGLAY-A-SGLSGLWIAIGLLIGAFLLWLLFAPRLRRLA-KARGATTIPDFLE 112 (493)
T ss_pred CCcCChH-HHHHHHHHHHHHHHHHhcchHHHH-h-cChHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccCCccHHHHHH
Confidence 6889999 666655544 44 34444455443 3 5665333222 33334455566666666 5555667899999
Q ss_pred HHhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhh
Q 040051 147 IELG-DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRK 225 (590)
Q Consensus 147 ~~~g-~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~ 225 (590)
+.+| +....+.+....+......+....+.+..++..++.+. .....+...++.......|.|.
T Consensus 113 ~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi~~---------------~~~~~~~~~~v~~Yt~~gG~~a 177 (493)
T COG0591 113 ARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGISY---------------VTGILIGALIVALYTFLGGLRA 177 (493)
T ss_pred HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCH---------------HHHHHHHHHHHHHHHHHcChhH
Confidence 9999 99999999999999999999999999998877776221 1123333445555556677777
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhccc-----------cCCC---CCCCCC-CChhhHHH--H-HHHHHHhhcchhhhhh
Q 040051 226 TSVLNWIASAINTVVILFVIIVGFAHA-----------DASN---LKPFLP-FGSEGIFK--A-AAVVYFAYGGFDNIAT 287 (590)
Q Consensus 226 ~~~~~~~~~~~~i~~~~~~~i~~~~~~-----------~~~~---~~~~~~-~g~~~~~~--~-~~~~~~~~~G~e~~~~ 287 (590)
..+...+=..+.++.+..+.+...... ..++ ..++.. ..+..... . ....+..+...+...+
T Consensus 178 v~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~r 257 (493)
T COG0591 178 VVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLGYFGQPHILPR 257 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhhhhcCchhhhh
Confidence 777665555554444433333322210 0111 011110 11111111 1 1111233333344444
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHHHHHHHH-----HHhhcccC-C----CCCCCcHHHHHHHHhChhHHHHHHHHHHH
Q 040051 288 MAEETKNPSRDIPIGLLGSMSMITIIYCLMAL-----SLCVMQPY-T----DIDPNAAYSVAFQRVGMKWAKYLVALGAL 357 (590)
Q Consensus 288 ~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~-----~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 357 (590)
.-. .|++ |+.||.......+-.+.++...+ ......+. + +.+.+..++......-++|..-++...++
T Consensus 258 ~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~g~~~~ail 335 (493)
T COG0591 258 FMA-AKSI-KSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLLPDLSVPLLNPELVFPYLILALFPPWIAGLLLAAIL 335 (493)
T ss_pred hhh-hccH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCCHHHHHHHHHHHHChHHHHHHHHHHHH
Confidence 433 4554 33443333333332322222211 11111111 1 12334566777777777888888888888
Q ss_pred HHHHHHHHHhhhchhHHH
Q 040051 358 KGMTTVLLVGALGNARYT 375 (590)
Q Consensus 358 ~~~~~~~~~~~~~~sR~l 375 (590)
.+.+++..+.+...|-.+
T Consensus 336 aAvmSt~ss~ll~~ss~~ 353 (493)
T COG0591 336 AAVMSTASSQLLVASSAI 353 (493)
T ss_pred HHHHHHHHHHHHhhhHHH
Confidence 888888887777776554
No 80
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.23 E-value=0.01 Score=61.57 Aligned_cols=244 Identities=14% Similarity=0.076 Sum_probs=136.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 040051 110 IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPN 189 (590)
Q Consensus 110 ~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (590)
++++.+++.++........+..+.++.. ......+..||+..+.+......+..+...+..+...++.++.+.+..-+
T Consensus 31 ai~aiilG~~i~~~~~~l~~~~G~~~Gl--~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~ 108 (386)
T TIGR02358 31 GLLAILLGHLVGVLLLSAAGVIGADTGL--SAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFG 108 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCc--CHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5666666655555444444444444322 36777788999999999998888888888889888888888887753211
Q ss_pred ccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCCChhhHH
Q 040051 190 SLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPFGSEGIF 269 (590)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~~ 269 (590)
. .. .....+++.++.......|.|...+++.+...+..+..+...+....+.+.... ..+.+...+.
T Consensus 109 ~---------~~--~~~~~~i~~~l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~s~~ 175 (386)
T TIGR02358 109 E---------ES--PMLWILIVGILVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFSKADLSEL--WNRAGDMSFA 175 (386)
T ss_pred C---------Cc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--cCCCCCccHH
Confidence 0 00 112223334456666778999999999998887776665555444444332211 1111112233
Q ss_pred HHHHHHHHh-hcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHH
Q 040051 270 KAAAVVYFA-YGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWA 348 (590)
Q Consensus 270 ~~~~~~~~~-~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (590)
.++....-. ..+....+.++...|+|+ +.-++...+..+...+..+.........+. .+|. +.....+..
T Consensus 176 ~~~~~~~~~~~swa~~~~DysRy~k~~~-~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~-----~d~~-~~~~~~g~~-- 246 (386)
T TIGR02358 176 VAVELVIAMPLSWLPLIADYTRFARNPR-HVFLGTVLGYFIGSCWMYFLGLAVTLATGQ-----TDII-SILAGAGLG-- 246 (386)
T ss_pred HHHHHHHHHHHHHHHHccchhhhcCCCc-ceehHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCHH-HHHHhccHH--
Confidence 332222211 122234778888888864 455777776666666555555544433332 2333 333333322
Q ss_pred HHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 040051 349 KYLVALGALKGMTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 349 ~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 378 (590)
.+..+..+++..++.....++.+=-+.++
T Consensus 247 -~~~~~~~~l~~~~~n~~N~ys~~l~l~~l 275 (386)
T TIGR02358 247 -IPALLIILLSTVTTTFMDIYSAAISTGNL 275 (386)
T ss_pred -HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 23334445555555555555554444443
No 81
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.22 E-value=0.0072 Score=65.82 Aligned_cols=282 Identities=11% Similarity=0.020 Sum_probs=140.2
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccchhhhHHHhc-
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAM-LSVFCYTEFAIEIPVAGGSFAYLRIELG- 150 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~-~~a~~~ael~~~~P~~Gg~y~~~~~~~g- 150 (590)
.|+++++..-.-..+..++...|......... .|...++.. ++..+.. ...+.+++--++.-. --..+|.++.++
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~-~G~~~~~~~-~g~~~~~~i~~~~~a~~lrr~g~-~T~~d~l~~Rf~s 142 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYT-SGYDGLIYS-LGFLVGWPIILFLIAERLRNLGR-YTFADVASYRLKQ 142 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHH-HHHHHHHHHHHHHHHHHHHHcCC-ccHHHHHHHHcCC
Confidence 58888886655445555554444444333333 465432222 2333322 334455665444432 346677778886
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|....+.+....+..+........+.+..++.+++.+. ...+.+..++.......-|+|...+.+
T Consensus 143 ~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~gi~~---------------~~~iii~~~i~~~Yt~~GGm~av~~td 207 (549)
T TIGR02711 143 RPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNY---------------HVAVVLVGILMVMYVLFGGMLATTWVQ 207 (549)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 66777777666666666666777777777777776421 112223333445555677898888887
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc--------------CCCCCCCCCCCh----hhHHHHHHHHHHhhcchhhhhhhhhhc
Q 040051 231 WIASAINTVVILFVIIVGFAHAD--------------ASNLKPFLPFGS----EGIFKAAAVVYFAYGGFDNIATMAEET 292 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~~--------------~~~~~~~~~~g~----~~~~~~~~~~~~~~~G~e~~~~~a~E~ 292 (590)
.+=.++.++..+++.+..+.+.+ +.....+.|.+. ...+...........|..-...-.=-.
T Consensus 208 ~iQ~~im~~g~i~~~~~~~~~~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~g~P~~~~R~~ta 287 (549)
T TIGR02711 208 IIKAVLLLFGATFMAFMVMKSVGFSFNTLFKEAMAVHPKGVAIMSPGGLVSDPISALSLGLGLMFGTAGLPHILMRFFTV 287 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhhCcccccccCCCccccchHHHHHHHHHHHHHhcCCchhheeeeec
Confidence 77766665544433332221111 111111112111 111211111222333332222222235
Q ss_pred cCCCCchhhHHHHHHHHHHHHHHHHHHH-H--hhcccCC-CC-C--------CCcHHHHHHHHhChhHHHHHHHHHHHHH
Q 040051 293 KNPSRDIPIGLLGSMSMITIIYCLMALS-L--CVMQPYT-DI-D--------PNAAYSVAFQRVGMKWAKYLVALGALKG 359 (590)
Q Consensus 293 k~p~r~~p~a~~~~~~~~~~~y~l~~~~-~--~~~~~~~-~~-~--------~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 359 (590)
||+ |+..|+..++......+|+...+. + ....+++ +. + .+..........++.++.-++..+.+.+
T Consensus 288 ks~-k~ar~s~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~glv~A~~~AA 366 (549)
T TIGR02711 288 SDA-KEARKSVFYATGFMGYFYILTFIIGFGAILLVSANPEFKDATGALIGGNNMAAVHLANAVGGNLFLGFISAVAFAT 366 (549)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccCCCcchHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 664 788899988877766666554322 1 1122211 11 0 0112223333445555555666666666
Q ss_pred HHHHHHHhhhchhH
Q 040051 360 MTTVLLVGALGNAR 373 (590)
Q Consensus 360 ~~~~~~~~~~~~sR 373 (590)
.+++..+.+.+.+-
T Consensus 367 ~mST~~s~l~a~st 380 (549)
T TIGR02711 367 ILAVVAGLTLAGAS 380 (549)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665553
No 82
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=98.20 E-value=0.00059 Score=70.58 Aligned_cols=248 Identities=14% Similarity=0.107 Sum_probs=132.9
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
+++-+.+..+.-....+.|+|++..|... .. .|.. .++.....+.+.......+.+.+.+.++. ..-.-.++.+|+
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~af-k~-~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~~-ty~~l~~~~~g~ 79 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAF-KT-AGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGER-TYSSLGDLIFGK 79 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHH-HH-hcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCCC-CHHHHHHHHcCC
Confidence 45667888888888999999999887765 33 6764 66677778888888888888888888866 333444556665
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-CccccccccccccCc-hhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 152 FAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREP-NSLRIHTNLREGYNL-LDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
..........-...+. +.++.....+.+........ ..+.. .+. .+... ..+..+.++..+.+.+ .... -+.
T Consensus 80 ~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~~-~~~~~~ill~~~~~i~pLsl~k--~l~~-Lk~ 153 (411)
T KOG1305|consen 80 LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SHY-LDRNFLILLVLLFIILPLSLLK--NLDS-LKY 153 (411)
T ss_pred CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-ccc-ccceeEeehHHHHHHHHHHHHH--hhhh-HHH
Confidence 4422111111000000 00000000111111100000 00000 000 00000 0122222222222222 1111 122
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccC--CCCCCCCCCCh--hhHHHHHHHHHHhhcchhhhhhhhhhccCCC-CchhhHHH
Q 040051 230 NWIASAINTVVILFVIIVGFAHADA--SNLKPFLPFGS--EGIFKAAAVVYFAYGGFDNIATMAEETKNPS-RDIPIGLL 304 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~~g~--~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~-r~~p~a~~ 304 (590)
....++..++.++..++......+. .......+++. .+++.++...+++|...+.....-.|+|||+ |++-+...
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~ 233 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSN 233 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHH
Confidence 2233333333333333322222111 11112233333 5788899999999999999999999999994 68889999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCC
Q 040051 305 GSMSMITIIYCLMALSLCVMQPYTD 329 (590)
Q Consensus 305 ~~~~~~~~~y~l~~~~~~~~~~~~~ 329 (590)
.+......+|......-....+.+.
T Consensus 234 ~~~~~~~~iy~~~g~~GYL~Fg~~v 258 (411)
T KOG1305|consen 234 IAIILATLIYLLTGLFGYLTFGDLV 258 (411)
T ss_pred HHHHHHHHHHHHHHHhhhheecccc
Confidence 9999999999998888776666543
No 83
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=98.16 E-value=0.0023 Score=65.87 Aligned_cols=244 Identities=16% Similarity=0.135 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHhhhccc--ccccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccc
Q 040051 119 VSAMLSVFCYTEFAIEIP--VAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTN 196 (590)
Q Consensus 119 ~~~~~~a~~~ael~~~~P--~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (590)
++..+..+.+-|++.++- +.-+..+-.++.+||.+++.......+........+..+.+.-++.+++.+.
T Consensus 20 ll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g~~~-------- 91 (358)
T PF01566_consen 20 LLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFGIPL-------- 91 (358)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCc--------
Confidence 344556666677777766 2335677778899999999998888888888878787777777766653321
Q ss_pred cccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcc-ccCCC-CCCCC----CCChhhHHH
Q 040051 197 LREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAH-ADASN-LKPFL----PFGSEGIFK 270 (590)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~-~~~~~-~~~~~----~~g~~~~~~ 270 (590)
....++..+....+..+..+...++++++..+..+..+.+++..+.. .+... ..++. |. ...+..
T Consensus 92 --------~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~-~~~~~~ 162 (358)
T PF01566_consen 92 --------WIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPG-PGSLLF 162 (358)
T ss_pred --------HHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcc-hhHHHH
Confidence 13333333333333332355577777777766666544444443332 22211 11222 22 122222
Q ss_pred HHHHHHHhhcchhhhhhhhh---hccCCC---Cc-hhhHHHHHHHHHHHHHHHHHHHH----hhcc-cCC-CCCCCcHHH
Q 040051 271 AAAVVYFAYGGFDNIATMAE---ETKNPS---RD-IPIGLLGSMSMITIIYCLMALSL----CVMQ-PYT-DIDPNAAYS 337 (590)
Q Consensus 271 ~~~~~~~~~~G~e~~~~~a~---E~k~p~---r~-~p~a~~~~~~~~~~~y~l~~~~~----~~~~-~~~-~~~~~~~~~ 337 (590)
.+...-.....++...+-+- +-.+++ ++ --|....-..+..++..+.+.++ .... +.+ +..+.+...
T Consensus 163 ~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~~~~~~~~~~~ 242 (358)
T PF01566_consen 163 AVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRPDEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGGSEVETAAQAA 242 (358)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhHHHHH
Confidence 22222233333333322221 111111 11 01222222222222222222211 1111 211 222334556
Q ss_pred HHHHHhCh-hHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 338 VAFQRVGM-KWAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 338 ~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
++++..-+ ++...++.++.+.+.+++..+...+.++.+.+.-
T Consensus 243 ~~L~~~~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~ 285 (358)
T PF01566_consen 243 QALEPLLGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFL 285 (358)
T ss_pred HHHHHhcCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhh
Confidence 67776666 7999999999999999999999999988887655
No 84
>PRK09395 actP acetate permease; Provisional
Probab=98.12 E-value=0.024 Score=61.85 Aligned_cols=154 Identities=10% Similarity=-0.038 Sum_probs=89.5
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHH-HHHHHHHHhhhcccccccchhhhHHHhc-
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAM-LSVFCYTEFAIEIPVAGGSFAYLRIELG- 150 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~-~~a~~~ael~~~~P~~Gg~y~~~~~~~g- 150 (590)
.|+++++....-..+..++...|......... .|...++ +.++..+.. ...+.+++--++.. .-..++|.++.+|
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~-~G~~~~~-~~~~~~~g~~~~~~~~~~~~r~~g-~~T~~d~l~~Rygs 144 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFT-SGYDGLI-YSIGFLVGWPIILFLIAERLRNLG-KYTFADVASYRLKQ 144 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHH-hCHHHHH-HHHHHHHHHHHHHHHHHHHHhhCC-CccHHHHHHHHcCC
Confidence 57899887666666666666555554444333 5654322 222222222 22333333333222 2346677778888
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 151 DFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 151 ~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
|....+.+....+..+........+.+..++.+++.+. ...+.+..++.......-|.|...+.+
T Consensus 145 ~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~gi~~---------------~~~ili~~~i~~iYt~~GGm~av~~TD 209 (551)
T PRK09395 145 GPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFGLNY---------------HVAVVLVGVLMMVYVLFGGMLATTWVQ 209 (551)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 56888888777777777777777777777777765421 112333334455566667999888877
Q ss_pred HHHHHHHHHHHHHH
Q 040051 231 WIASAINTVVILFV 244 (590)
Q Consensus 231 ~~~~~~~i~~~~~~ 244 (590)
.+=.++.++..+++
T Consensus 210 ~iQ~iim~~g~ii~ 223 (551)
T PRK09395 210 IIKAVLLLSGATFM 223 (551)
T ss_pred HHHHHHHHHHHHHH
Confidence 76666655544433
No 85
>PLN00151 potassium transporter; Provisional
Probab=98.03 E-value=0.0016 Score=70.98 Aligned_cols=283 Identities=13% Similarity=0.104 Sum_probs=141.0
Q ss_pred hhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC---------ChhhHHHHHHH
Q 040051 204 LDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPF---------GSEGIFKAAAV 274 (590)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~ 274 (590)
+..+++++++.+..+.-+|....+++..-..++-++.+..+.+..+.+.++.-+..++|. +..+ +..+..
T Consensus 274 VV~Is~~ILv~LF~~Q~~GT~kVg~~FgPImllWFl~i~~iGiynI~~~~p~Vl~AlnP~Y~~~Ff~~~~~~g-w~~LGg 352 (852)
T PLN00151 274 VVMISVAFLVILFSVQRFGTSKVGFAFGPALALWFCSLGGIGIYNLVKYDSSVFRAFNPVYIYYFFKRNSTKA-WSALGG 352 (852)
T ss_pred ehhHHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhhCHHHHHHHHHhCCCce-EEEecc
Confidence 456788888888888999988777776555555555555555555655555544444442 2222 223445
Q ss_pred HHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHH
Q 040051 275 VYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVAL 354 (590)
Q Consensus 275 ~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 354 (590)
++-+.+|.|+.-.=-+ +-.+|.+.+|-...+.=+.++--+..-++....|. ..++|+... ..+++.+-+.+
T Consensus 353 VvLciTGaEALfADLG--HFg~~sIqiaw~~~V~P~LlL~Y~GQaA~L~~~p~---~~~npFy~s----vP~~~~wP~~v 423 (852)
T PLN00151 353 CVLCATGSEAMFADLG--YFSVRSIQLAFTCLVLPCLLLAYMGQAAYLMKNPD---SAEQIFFSS----VPSSLFWPVFL 423 (852)
T ss_pred eeeeeccchhhhcccC--CCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCchhHHHHHH
Confidence 6778899997643222 33456666665544444444333333333333331 124455432 33344443333
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hhhccCCCC-C---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040051 355 GALKGMTTVLLVGALGNARYTTHIARAHMIPP-WFALVHPKT-G---TPINANLLIVLASALIALFSGLDILSALLSLST 429 (590)
Q Consensus 355 ~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~ 429 (590)
.+.++..-+..+...++=-+..+.-+-|.+|+ ..-+++++. | .|..--++.....++...+.+.+.+.+..+++.
T Consensus 424 lAtlAaIIASQA~ISgtFSii~Qai~Lg~fPRvkIvHTS~~~~GQIYIP~vNw~Lmv~~i~v~l~F~~s~~l~~AYGiAV 503 (852)
T PLN00151 424 IANLAALIASRAMTTATFSCIKQSMALGCFPRLKIIHTSRKFMGQIYIPVINWFLLVMCLVVVCSFRSITDIGNAYGIAE 503 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEeCCCccCCceeeHHHHHHHHHHHHhheeeecCHHHHHHHhhhhh
Confidence 33333333333333333344444556689994 233444332 2 465544444333333444567788888887776
Q ss_pred HHHHHHHHHH-HHHHhhhccCCCCccchhHHHHH--HHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHH
Q 040051 430 LFVFMMMAVA-LLVRRYYVREITPRKNLLMLVIF--LLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGIS 502 (590)
Q Consensus 430 ~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (590)
...+++..+- .++.+...+ .+.+....+ ++..+-...+.+........||+++.+.+++. .+...|.
T Consensus 504 ~~vM~iTT~L~~lV~~~~W~-----~~~~~~~~f~~~F~~ie~~f~sA~l~Ki~~GGW~Pl~la~v~~-~iM~~W~ 573 (852)
T PLN00151 504 VGVMMVSTILVTLVMLLIWQ-----TNIFLVLCFPVVFLSVELVFFSSVLSSVGDGGWIPLVFASVFL-CIMYIWN 573 (852)
T ss_pred hhhhhHHHHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH-HHHHHHH
Confidence 6555544332 222232211 011111111 12233334444444555567776655554443 3333443
No 86
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=98.02 E-value=0.0023 Score=67.55 Aligned_cols=264 Identities=15% Similarity=0.116 Sum_probs=143.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHH
Q 040051 159 GNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINT 238 (590)
Q Consensus 159 ~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i 238 (590)
-+..-+.+++.|....+..+-++...+... ..+..+++++++.+..+.-+|....+++.--...+-+
T Consensus 100 al~~gDgviTPAISVlSAvEGl~v~~p~~~-------------~~Vv~it~~ILv~LF~iQ~~GT~~ig~~FgPim~~WF 166 (534)
T PF02705_consen 100 ALFYGDGVITPAISVLSAVEGLEVATPSLE-------------PYVVPITIAILVGLFAIQRFGTAKIGKLFGPIMLLWF 166 (534)
T ss_pred hhhhcceeecchHHHHHHhhhhhccCCCCc-------------ceehhHHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH
Confidence 344445567777777777776664432211 1245678888888888999998888877544444444
Q ss_pred HHHHHHHHhhhccccCCCCCCCCC---------CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHH
Q 040051 239 VVILFVIIVGFAHADASNLKPFLP---------FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSM 309 (590)
Q Consensus 239 ~~~~~~~i~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~ 309 (590)
+.+..+.+..+... ++-+..++| ++..+ +..+..++-+.+|-|+.-.=-+ +-.+|++.++-..-+.-
T Consensus 167 ~~l~~~G~~~I~~~-p~Vl~A~nP~yai~f~~~~~~~~-~~~LG~V~L~~TGaEALyADmG--Hfg~~~Ir~aw~~~V~P 242 (534)
T PF02705_consen 167 LTLGVLGLYNIIQH-PEVLKALNPYYAIRFFIRNGWIG-FFVLGAVFLCVTGAEALYADMG--HFGRKPIRIAWFFLVFP 242 (534)
T ss_pred HHHHHHHHHHHhhC-HHHHHHhCHHHHHHHHHHcCCch-hhhcchHHHHHhhHHHHHhhhc--cccchhhhhhHHHHHHH
Confidence 44444444333332 222222222 33333 3345677889999998764222 22346666665553333
Q ss_pred HHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hh
Q 040051 310 ITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPP-WF 388 (590)
Q Consensus 310 ~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f 388 (590)
+.++--+.+-+.....|. ..++|+.... .+|+.+-+.+...++..-+..+...++=-+..+.-+-|.+|| ..
T Consensus 243 aL~LnY~GQgA~ll~~p~---~~~npFf~~~----P~~~~~p~~ilAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I 315 (534)
T PF02705_consen 243 ALLLNYFGQGALLLSHPE---AVSNPFFLLI----PEWLLWPMVILATLATIIASQAVISGAFSLTRQAIQLGYFPRLKI 315 (534)
T ss_pred HHHHHHccHHHHHHcCcc---hhhhHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEE
Confidence 333333333333333331 1256665443 335444444444444443444455555555666678899995 23
Q ss_pred hccCCCC-C---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHhhh
Q 040051 389 ALVHPKT-G---TPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVAL-LVRRYY 446 (590)
Q Consensus 389 ~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~r~~ 446 (590)
.+.+++. | .|..--++......+...+.+-+.+.+..+++......+..+-. ++.|++
T Consensus 316 ~hTS~~~~GQIYIP~vNw~L~i~~i~vvl~F~~S~~la~AYGiAVt~tM~iTT~L~~~v~~~~ 378 (534)
T PF02705_consen 316 VHTSEKEEGQIYIPEVNWLLMIGVIAVVLGFRSSSNLAAAYGIAVTGTMLITTILLFLVMRRV 378 (534)
T ss_pred EECCcccCCcEechHHHHHHHHHHHhhheEECChHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444333 2 46655444444444444557788888888888777776665543 344444
No 87
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=98.02 E-value=0.026 Score=58.39 Aligned_cols=122 Identities=13% Similarity=0.105 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhccc-ccc-cchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcc
Q 040051 114 YVASGVSAMLSVFCYTEFAIEIP-VAG-GSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSL 191 (590)
Q Consensus 114 ~ll~~~~~~~~a~~~ael~~~~P-~~G-g~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 191 (590)
++...++.-+.++..-|++.+.- .+| |.-+-.++.++|.++++.-....+..+...-.+..+.+--++.+++.+.
T Consensus 50 ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~ip~--- 126 (416)
T COG1914 50 LLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFGIPL--- 126 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH---
Confidence 33334555566677777777766 333 4677778889999998888777777777777788887777777765421
Q ss_pred ccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc
Q 040051 192 RIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHAD 253 (590)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~ 253 (590)
.++.++..+..++...+- -..+++.+...+.++..+.+....+.+.+
T Consensus 127 --------------~~g~iItav~~~iil~~~-~~r~~E~~v~~l~~~~~i~~~~~~~~~~p 173 (416)
T COG1914 127 --------------IIGAVITAVDVLIILLLK-GYRLLERVVLILGLVLVILFVYVAFVAPP 173 (416)
T ss_pred --------------HHHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 233333333333222221 56677777777776666666666555433
No 88
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.91 E-value=0.0006 Score=72.46 Aligned_cols=240 Identities=17% Similarity=0.068 Sum_probs=117.1
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccC--hH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHH
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAG--PA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIE 148 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G--~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~ 148 (590)
.+|+.++++.+.+=++..+....+..-... .. .| .. ++++.+++.++........+.++.+.-. ......+..
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~-~~-~gL~~~~ailai~~G~~l~~i~~~~~~~~G~r~Gl--~~~v~sR~~ 80 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALG-VA-LGLSFWQAILAILIGNLLGAILVALMGIIGPRTGL--PTMVLSRAS 80 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHH-HC-CCS-HHHHHHHHHHHHHHHHHHHHHHTHHHHCC-----HHHHTTTT
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHH-Hc-cCchHHHHHHHHHHHHHHHHHHHHHhcccccccCC--Cchhcchhc
Confidence 467788999998877766554444332222 12 33 22 6666666666655544444555544332 356666779
Q ss_pred hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCcccccc-ccccccCchhHHHHHHHHHHHHHHhhchhhhh
Q 040051 149 LGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHT-NLREGYNLLDPIAVAVLATAATIASISTRKTS 227 (590)
Q Consensus 149 ~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~ 227 (590)
||.....+......+..+...+.+....++.+....+...+.+...+ ..........+..+++.++.......|.|...
T Consensus 81 FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~l~ 160 (440)
T PF02133_consen 81 FGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLFAIYGMKALR 160 (440)
T ss_dssp S-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHHHCTHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 99988888888888888888888888888888887765322110000 00000000112223334455556778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccCCC--CCCCCCCChhhHHHHHHHHHHhhc-chhhhhhhhhhccCCCCchhhHHH
Q 040051 228 VLNWIASAINTVVILFVIIVGFAHADASN--LKPFLPFGSEGIFKAAAVVYFAYG-GFDNIATMAEETKNPSRDIPIGLL 304 (590)
Q Consensus 228 ~~~~~~~~~~i~~~~~~~i~~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~~a~E~k~p~r~~p~a~~ 304 (590)
+++.+...+.....+...+......+... ..+..+.....+..++....-.+. ..-..+.++...|++ |+..++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~-~~~~~~~~ 239 (440)
T PF02133_consen 161 RLAVIAAPILLVVFIGMLIWALSKAGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD-TSAWWGFW 239 (440)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHCT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H-HHHHHHHH
T ss_pred hHHhhhhHHHHhhhhheeEEEeecCCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC-CCcEEEEe
Confidence 88877766555444333333333322211 111111111123333322222211 223344677778875 44445555
Q ss_pred HHHHHHHHHHHH
Q 040051 305 GSMSMITIIYCL 316 (590)
Q Consensus 305 ~~~~~~~~~y~l 316 (590)
.+.....+...+
T Consensus 240 ~~~~~~~~~~~~ 251 (440)
T PF02133_consen 240 LGFPGGFIPFVL 251 (440)
T ss_dssp HHHHHHHHHHHH
T ss_pred ehhhhHHHHHHH
Confidence 555554444433
No 89
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=97.75 E-value=0.08 Score=56.15 Aligned_cols=349 Identities=13% Similarity=0.043 Sum_probs=157.2
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcc-----------hHhHhh-------cc---C-h-HHHHHHHHHHHHHHHHHHHH
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLT-----------GQEAHK-------HA---G-P-AIVLSYVASGVSAMLSVFCY 128 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~-----------~~~~~~-------~~---G-~-~~~~~~ll~~~~~~~~a~~~ 128 (590)
-|.+++.++-+++.++.-+|+|+..-. +..... .+ . - ..+.+|-+-++..+..++.+
T Consensus 71 ~kPefS~~sW~aMlf~aGig~GivfwgvaEP~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~ 150 (485)
T PF02028_consen 71 AKPEFSTFSWFAMLFCAGIGAGIVFWGVAEPLYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFF 150 (485)
T ss_dssp S--SS-HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCchHHHHHHHHHHhcchhhcchhHhhHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheee
Confidence 366799999999999998888875421 111000 00 0 0 13456666677777777777
Q ss_pred HHhhhcccccccchhhhHHHhchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhcCCCCccccccccccccCch
Q 040051 129 TEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESI----VGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLL 204 (590)
Q Consensus 129 ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (590)
..-...+.-+...|....+...+..|.+.=....++.+ .+.+......+.-++..++.+++... .
T Consensus 151 y~k~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~Gi~~~~~~-----------~ 219 (485)
T PF02028_consen 151 YNKGKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLFGIPNTFGL-----------Q 219 (485)
T ss_dssp HTS---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSTHHH-----------H
T ss_pred eecCCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHcCCCCchHH-----------H
Confidence 66333333444455555443334445544444444443 34444455555556666665433211 1
Q ss_pred hHHHHHHHHHHHHHHhhc----hhhhhHHHHHHHHHHHHHHHHHHHhhhc-----------cccC---C-CCCCCCCCC-
Q 040051 205 DPIAVAVLATAATIASIS----TRKTSVLNWIASAINTVVILFVIIVGFA-----------HADA---S-NLKPFLPFG- 264 (590)
Q Consensus 205 ~~~~~~~~~~~~~i~~~g----~k~~~~~~~~~~~~~i~~~~~~~i~~~~-----------~~~~---~-~~~~~~~~g- 264 (590)
..+.+++.++.+.-...| +|..++++..+.+..++.++++.=..+. ..+. . +..++.+.+
T Consensus 220 ~~ii~~~~~i~~~S~~~Gl~kGIk~LS~~n~~l~~~ll~~vl~~Gpt~fil~~~~~s~G~yl~~f~~~s~~t~~~~~~~~ 299 (485)
T PF02028_consen 220 IIIIIVITVIFTISAVSGLDKGIKRLSNINVYLAFALLLFVLLFGPTVFILNLFTESIGDYLQNFFRMSLWTDPFGNSGQ 299 (485)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHT--TTTTTTTH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccccccCccc
Confidence 233333344444444444 4555555555554443333222100000 0000 0 111222333
Q ss_pred hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhh-ccc-----CCCC---CCCcH
Q 040051 265 SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCV-MQP-----YTDI---DPNAA 335 (590)
Q Consensus 265 ~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~-~~~-----~~~~---~~~~~ 335 (590)
|.+-+..+.-+.|.-.+--....++.=.|. |+++--++..++...+.-.+-...... ... ..+. .++++
T Consensus 300 w~~~WTvFYwaWWiawaPfvG~FiArISkG--RTIRE~il~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~ 377 (485)
T PF02028_consen 300 WPQDWTVFYWAWWIAWAPFVGLFIARISKG--RTIREFILGVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGP 377 (485)
T ss_dssp HHHHTHHHHHHHHHHTHHHHHHHHHHCTTT--SBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-H
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHhhhcCC--cCHHHHHHHHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcch
Confidence 544444444444444444445555666665 788555555444444332222211111 111 1111 01112
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHH--HHHHHHHHH
Q 040051 336 YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLL--IVLASALIA 413 (590)
Q Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~--~~~~~~~~~ 413 (590)
-...++....-++..++....++..+....+..-+++..+-.++.+| +.+| ..+.+..|. .++++..+.
T Consensus 378 ~~a~~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~-------~~ep--~~~~ri~W~~~~~~~a~~ll 448 (485)
T PF02028_consen 378 EAALFAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKG-------DEEP--PRWLRIFWGLIIGALAIVLL 448 (485)
T ss_dssp HHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-------TSSS---HHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCC-------CCCC--chHHHHHHHHHHHHHHHHHH
Confidence 22222222222233455555555555555666666777777777665 1121 223333333 233344444
Q ss_pred HHhhHHHH---HHHHHHHHHHHHHHHHHHHHH
Q 040051 414 LFSGLDIL---SALLSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 414 ~~~~~~~l---~~~~~~~~~~~~~~~~~~~~~ 442 (590)
..+.++.+ ..+.++...+..++.+++.++
T Consensus 449 ~~ggl~~lq~~~ii~~lP~~~v~~~~~~~~~k 480 (485)
T PF02028_consen 449 LIGGLDALQSASIIGGLPFSFVMLLMCISFIK 480 (485)
T ss_dssp HHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555444 444445555556666666665
No 90
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.65 E-value=0.089 Score=54.06 Aligned_cols=181 Identities=10% Similarity=0.054 Sum_probs=106.2
Q ss_pred HHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCc
Q 040051 124 SVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNL 203 (590)
Q Consensus 124 ~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (590)
.++..+|--+++-+--=.-.++.|.-.+..-.+++....+...........+.+..+..+++.+..
T Consensus 90 ~~fL~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~gv~~~-------------- 155 (529)
T COG4147 90 LLFLIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLGVPYH-------------- 155 (529)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCCCce--------------
Confidence 566777777776432111223345556777777777777777777777778888888888875321
Q ss_pred hhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCC---------------CCCCCCCCCh--h
Q 040051 204 LDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADAS---------------NLKPFLPFGS--E 266 (590)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---------------~~~~~~~~g~--~ 266 (590)
..+.++.++......+-|+|...+.|.+=.++.+...++..+....+.+.+ +.....+.|. .
T Consensus 156 -vgv~ig~ilm~~Yvv~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~ 234 (529)
T COG4147 156 -VGVVIGGILMMVYVVLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYK 234 (529)
T ss_pred -eehhhHhHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCccc
Confidence 134455566667777889999999988776666655544444333321110 0001111221 2
Q ss_pred hHHHHHHHHHHhhcchhhhhhhhhh---ccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 040051 267 GIFKAAAVVYFAYGGFDNIATMAEE---TKNPSRDIPIGLLGSMSMITIIYCLMALS 320 (590)
Q Consensus 267 ~~~~~~~~~~~~~~G~e~~~~~a~E---~k~p~r~~p~a~~~~~~~~~~~y~l~~~~ 320 (590)
..+..+...+--..|.-...|.--. +.| -|+..+...++...++++|+...+.
T Consensus 235 ~~i~~isl~~aLm~GTAgLPHil~RFfTvp~-~k~AR~Sv~wA~~fIg~fYi~~~~i 290 (529)
T COG4147 235 DPIDFISLGFALMVGTAGLPHILMRFFTVPD-AKEARKSVFWATGFIGIFYILTPII 290 (529)
T ss_pred CHHHHHHHHHHHHHccCCCCeEEEEEEecCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444444566666665422 222 2566788888999999999876544
No 91
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=97.56 E-value=0.14 Score=53.14 Aligned_cols=308 Identities=13% Similarity=0.107 Sum_probs=156.4
Q ss_pred hhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHHH
Q 040051 88 AVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLE 164 (590)
Q Consensus 88 ~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~ 164 (590)
.-.|.|-..-|...-.+ +|.. +.++++++++..=..+.. +. -++||.+.=..+..||..|.+..-...+.
T Consensus 20 mFFGAGNLIFPp~LG~~-aG~~~~~a~~GF~iT~VglPlLgii----av--a~~~g~~~~l~~rv~~~f~~~f~~~i~l~ 92 (439)
T PRK15433 20 LFVGAGNIIFPPMVGLQ-AGEHVWTAAFGFLITAVGLPVLTVV----AL--AKVGGGVDSLSTPIGKVAGVLLATVCYLA 92 (439)
T ss_pred HHhcCcchhccHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHH----HH--hhcCCCHHHHhhhcchHHHHHHHHHHHHH
Confidence 33688888778776555 7753 555666666553222211 11 12333444444556777666554322111
Q ss_pred HHHHHH-HHHHHHHHHHHHhhcCCCCccccc--cccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHH
Q 040051 165 SIVGGA-AVARAWTSYFTTLLNREPNSLRIH--TNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVI 241 (590)
Q Consensus 165 ~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~ 241 (590)
++.. +..+.. ...++.. |-.++......+..+++..+..++.+..-|...++-++++-+.++.+
T Consensus 93 --IGP~~aiPRta-----------avsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l 159 (439)
T PRK15433 93 --VGPLFATPRTA-----------TVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIAL 159 (439)
T ss_pred --HhhccccCCcc-----------ccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHH
Confidence 1100 001111 1112211 21221101123566777778888888899999999999999999988
Q ss_pred HHHHHhhhccccCCC--C-CCCCCCC-hhhHHHHH----HHHHHhhcchhhhhhhhhhccCCCCchhhHH----HHHHHH
Q 040051 242 LFVIIVGFAHADASN--L-KPFLPFG-SEGIFKAA----AVVYFAYGGFDNIATMAEETKNPSRDIPIGL----LGSMSM 309 (590)
Q Consensus 242 ~~~~i~~~~~~~~~~--~-~~~~~~g-~~~~~~~~----~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~----~~~~~~ 309 (590)
+++++.++.+...+. . ..+..+. ..|+..+- ..+...|...-.-+--....||+ |++.|.+ ..+...
T Consensus 160 ~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii~~i~~~G~~~~-~~~~k~t~~ag~ia~~~ 238 (439)
T PRK15433 160 VILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGVTEA-RLLTRYTVWAGLMAGVG 238 (439)
T ss_pred HHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHHH
Confidence 888888887632221 1 0111110 11121110 11122222222222233446664 3444444 444444
Q ss_pred HHHHHHHHHHHHhhccc-CCCCCCC-cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchh
Q 040051 310 ITIIYCLMALSLCVMQP-YTDIDPN-AAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPW 387 (590)
Q Consensus 310 ~~~~y~l~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~ 387 (590)
..++|......-....+ .++.++. .-........-++++..++.+.+.++++++..+...+.++.+.... |
T Consensus 239 L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~-----~-- 311 (439)
T PRK15433 239 LTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYV-----P-- 311 (439)
T ss_pred HHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----C--
Confidence 44556555544332222 1111112 2223334455668899999999999999999999888888764321 1
Q ss_pred hhccCCCCCCchH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040051 388 FALVHPKTGTPIN-ANLLIVLASALIALFSGLDILSALLSLSTLFVF 433 (590)
Q Consensus 388 f~~~~~~~~~P~~-ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (590)
.|++ .+++.++++.+++-++ ++.++++..-...+.|
T Consensus 312 ---------isY~~~v~i~~l~S~~lSn~G-~~~II~~s~PiL~~iY 348 (439)
T PRK15433 312 ---------LSYRTLVFILGGFSMVVSNLG-LSQLIQISVPVLTAIY 348 (439)
T ss_pred ---------CcHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHh
Confidence 3333 3344455555444444 5666666655555555
No 92
>PLN00150 potassium ion transporter family protein; Provisional
Probab=97.55 E-value=0.02 Score=62.76 Aligned_cols=283 Identities=15% Similarity=0.117 Sum_probs=141.9
Q ss_pred hhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC---------ChhhHHHHHHH
Q 040051 204 LDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPF---------GSEGIFKAAAV 274 (590)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~ 274 (590)
+..+++++++.+..+.-+|....+++..-..++-++.+..+.+..+.+.++.-+..++|. +..+ +..+..
T Consensus 214 Vv~is~~ILv~LF~iQ~~GT~kVg~~FgPIm~~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LG~ 292 (779)
T PLN00150 214 VTIISCVILVILFSLQRFGTHKVSFLFAPIFLCWFFSLALIGCYNIIKWDKSVFLAFNPLYIVSFFIRNGRQG-WESLGG 292 (779)
T ss_pred ehhhHHHHHHHHHHHHhccchhhhhhhccHHHHHHHHHHHHHHHHHHhcCHHHHhhcCHHHHHHHHHhCCCce-EEEecc
Confidence 446778888888888999988777766555555555555555555555555444444442 2222 223455
Q ss_pred HHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHH
Q 040051 275 VYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVAL 354 (590)
Q Consensus 275 ~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 354 (590)
++-+.+|.|+.-.=-+ +-.+|.+.+|-..-+.=+.++--+..-+.....|. +.++|+... ..+++.+-+.+
T Consensus 293 V~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~LlL~Y~GQaA~ll~~p~---~~~npFf~~----iP~~~~~P~~v 363 (779)
T PLN00150 293 IVLCMTGTEAMFADLG--HFTVKSMQIAFTSLVYPCLLLTYLGQAAYLVKHME---DVNDPFYRS----LPKPIYWPIFV 363 (779)
T ss_pred eeeeecchhhhhcccc--CCCccceeeeehhhHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCchhHHHHHH
Confidence 6788899997643222 33456666665544444433333333333332231 224555433 33444444444
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hhhccCCCCC----CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040051 355 GALKGMTTVLLVGALGNARYTTHIARAHMIPP-WFALVHPKTG----TPINANLLIVLASALIALFSGLDILSALLSLST 429 (590)
Q Consensus 355 ~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~ 429 (590)
.+.++..-+..+...++=.+..+.-+-|.+|+ ..-+++++.+ .|..--++.....++...+.+.+.+.+..+++.
T Consensus 364 lAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkI~hTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV 443 (779)
T PLN00150 364 LATCSAMIASQAMISATFSIVKQAMALGCFPRVKIVHTSNKVHGQVYIPEINWILMVLCLVITAGFRDTDEIGNAYGIAV 443 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheEEecChHHHHHHhhhhe
Confidence 43333333334444444444555556789994 2334443322 465544433333333334467788888887776
Q ss_pred HHHHHHHHHH-HHHHhhhccCCCCccchhHHHH--HHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHH
Q 040051 430 LFVFMMMAVA-LLVRRYYVREITPRKNLLMLVI--FLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGIS 502 (590)
Q Consensus 430 ~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (590)
....++..+- .++.+...+ .+.+.... .++..+-...+..........||+++.+.+++.. +...|.
T Consensus 444 ~~vM~iTT~L~~~v~~~~W~-----~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~-iM~~W~ 513 (779)
T PLN00150 444 VGVMIITTCLMTLVMIIIWR-----KHILLALLFFTVFAIIEGIYFSAVLFKVTQGGWVPLVIAAVFGT-VMYTWH 513 (779)
T ss_pred ehhhHHHHHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcHHHHHHHHHHH-HHHHHH
Confidence 5555444332 233332211 11111111 1222334444444555555677766655554433 333443
No 93
>PLN00149 potassium transporter; Provisional
Probab=97.45 E-value=0.029 Score=61.60 Aligned_cols=285 Identities=13% Similarity=0.094 Sum_probs=143.1
Q ss_pred hHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC---------ChhhHHHHHHHH
Q 040051 205 DPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPF---------GSEGIFKAAAVV 275 (590)
Q Consensus 205 ~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~~ 275 (590)
..+++++++.+..+.-+|....+++..-..++-++.+..+.+..+.+.++.-+..++|. +..+ +..+..+
T Consensus 199 v~is~~ILv~LF~~Q~~GT~kvg~~FgPIml~Wf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~f~~~~~~~g-~~~LGgV 277 (779)
T PLN00149 199 VPVACIILIGLFALQHYGTHRVGFLFAPVVLTWLLCISAIGVYNIFHWNPHVYQALSPYYMYKFLKKTQRGG-WMSLGGI 277 (779)
T ss_pred hHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHhHhhhcCHHHHHHHHHHCCCce-eEeecch
Confidence 45778888888888889988777766555555555555555555555555555555542 2222 2235556
Q ss_pred HHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHH
Q 040051 276 YFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALG 355 (590)
Q Consensus 276 ~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 355 (590)
+-+.+|.|+.-.=-+ +-.+|.+.+|-...+.=+.++--+..-++....|...-+-++|+... ..+++.+-+.+.
T Consensus 278 ~L~iTG~EALyADlG--HF~~~~Ir~aw~~~V~P~L~L~Y~GQaA~l~~~p~~~~~~~~pFy~~----iP~~~~~P~~vl 351 (779)
T PLN00149 278 LLCITGSEAMFADLG--HFSQLSIKIAFTSLVYPSLILAYMGQAAYLSKHHVIESDYRIGFYVS----VPEKLRWPVLVI 351 (779)
T ss_pred hhcccchhhhhhccc--CCCccceeeeehhhHHHHHHHHhhhHHHHHhcCcchhccccCcHHHh----CCchhHHHHHHH
Confidence 788999997643222 33456666665544444444333334444333332111223455432 334444444444
Q ss_pred HHHHHHHHHHHhhhchhHHHHHHHhcCCCchh-hhccCCCCC----CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040051 356 ALKGMTTVLLVGALGNARYTTHIARAHMIPPW-FALVHPKTG----TPINANLLIVLASALIALFSGLDILSALLSLSTL 430 (590)
Q Consensus 356 ~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~-f~~~~~~~~----~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 430 (590)
+.++..-+..+...++=.+..+.-+-|.+|+. .-+++++.. .|..--++.....++...+.+.+.+.+..+++..
T Consensus 352 AtlAaIIASQA~ISg~FSii~Qa~~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~l~~AYGiAV~ 431 (779)
T PLN00149 352 AILAAVVGSQAIITGTFSIIKQCSALGCFPKVKIVHTSSKIHGQIYIPEINWTLMLLCLAVTVGFRDTKRLGNASGLAVI 431 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCcccCCceeeHHHHHHHHHHHHhheeEecChHHHHHHhhhhhe
Confidence 33333333344444444444455567899942 334443322 4655444333333333445677788888877765
Q ss_pred HHHHHHHHH-HHHHhhhccCCCCccchhHHHHH--HHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHH
Q 040051 431 FVFMMMAVA-LLVRRYYVREITPRKNLLMLVIF--LLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGIS 502 (590)
Q Consensus 431 ~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (590)
...++..+- .++.+...+ .+.+....+ ++..+-...+..........||+++.+.+++.. +...|.
T Consensus 432 ~vM~iTT~L~~lv~~~~W~-----~~~~~~~~f~~~f~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~-iM~~W~ 500 (779)
T PLN00149 432 TVMLVTTCLMSLVIVLCWH-----KSVLLAICFIFFFGTIEALYFSASLIKFLEGAWVPIALSFIFLL-VMYVWH 500 (779)
T ss_pred hHHHHHHHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHH-HHHHHH
Confidence 555444332 233332211 011111111 222334444445555556677766655554433 333443
No 94
>TIGR00794 kup potassium uptake protein. Proteins of the KUP family include the KUP (TrkD) protein of E. coli, a partially sequenced ORF from Lactococcus lactis, high affinity K+ uptake systems (Hak1) of the yeast Debaryomyces occidentalis as well as the fungus, Neurospora crassa, and several homologues in plants. While the E. coli KUP protein is assumed to be a secondary transporter, and uptake is blocked by protonophores such as CCCP (but not arsenate), the energy coupling mechanism has not been defined. However, the N. crassa protein has been shown to be a K+:H+ symporter, establishing that the KUP family consists of secondary carriers. The plant high affinity (20mM) K+ transporter can complement K+ uptake defects in E. coli.
Probab=97.44 E-value=0.017 Score=62.76 Aligned_cols=278 Identities=14% Similarity=0.140 Sum_probs=143.9
Q ss_pred hhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCC---------CChhhHHHHHHH
Q 040051 204 LDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLP---------FGSEGIFKAAAV 274 (590)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~ 274 (590)
+..+++++++.+..+.-+|....+++.--...+-++.+.++.+..+...++.-+..++| ++..+ +..+..
T Consensus 168 Vv~it~~ILv~LF~iQ~~GT~kvg~~FgPim~vWF~~l~~~Gi~~I~~~~P~Vl~AlnP~ya~~f~~~~~~~~-~~~LG~ 246 (688)
T TIGR00794 168 VVPISCIILVLLFLIQRFGTAKVGFTFAPIILVWLLLLAGIGIYNIVKFNPEVLKALSPYYAVQFFIEYGTVG-WVSLGG 246 (688)
T ss_pred ehhHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHhcCHHHHhHhCHHHHHHHHHHCCCce-eeeccc
Confidence 45677888888888889998877777665555555555555555555534443444444 22222 223555
Q ss_pred HHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHH
Q 040051 275 VYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVAL 354 (590)
Q Consensus 275 ~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 354 (590)
++-+.+|.|+.-.=-+.. -+|.+.+|-..-+.-+.++--+..-+.....|. ..++|+... ..+|+.+-+.+
T Consensus 247 V~L~iTGaEALyADmGHF--g~~~Ir~aw~~~V~P~L~LnY~GQgA~ll~~p~---~~~NpFf~~----~P~~~~~p~~v 317 (688)
T TIGR00794 247 VVLSITGVEAMFADLGHF--GKLPIQLAWFTFVYPSLILCYIGQAAYLSKHPE---AIKNPFFLS----IPDWALWPLFI 317 (688)
T ss_pred hhheeccHhhhhcccCCC--CcccceeehHHHHHHHHHHHHcchHHHHhcCcc---hhcCcHHHh----CchHHHHHHHH
Confidence 678899999764433332 346666665533333333322333333332231 124666543 33455554444
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hhhccCCC-CC---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040051 355 GALKGMTTVLLVGALGNARYTTHIARAHMIPP-WFALVHPK-TG---TPINANLLIVLASALIALFSGLDILSALLSLST 429 (590)
Q Consensus 355 ~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~ 429 (590)
.+.++..-+..+...++=.+..+.-+-|.+|+ ...+.+++ .| .|..--++.....++...+.+-+.+.+..+++.
T Consensus 318 lAtlAtIIASQA~IsG~FSl~~Qai~Lg~~Pr~~I~hTS~~~~GQIYiP~vNw~Lmv~~i~vvl~F~~S~~la~AYGiaV 397 (688)
T TIGR00794 318 IATLAAIIASQAVISGVFSITSQAVRLGCFPRVKIIHTSEKYHGQIYIPFVNWLLMLGVIAVTAGFRDTNNLGAAYGIAV 397 (688)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHheeEEecChHHHHHHhhhhh
Confidence 44444433334444444455555667799994 23444433 22 465544444333333444567788888888777
Q ss_pred HHHHHHHHHH-HHHHhhhccCCCCccchhHHH--HHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHH
Q 040051 430 LFVFMMMAVA-LLVRRYYVREITPRKNLLMLV--IFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFL 496 (590)
Q Consensus 430 ~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (590)
...+++..+- .++.++..+ . +++... ...+..+-...+.+........||+++.+.++++.+
T Consensus 398 t~tM~iTT~L~~~v~~~~w~-~----~~~~~~~~~~~f~~id~~ff~anl~Ki~~GGW~pl~ia~i~~~i 462 (688)
T TIGR00794 398 TGTFLVTTCLMTVVMTIVWK-W----NIYFVALFLLVFLSVELIYFSSNLDKVPEGGWFPLSLSGIFMSV 462 (688)
T ss_pred hhhhHHHHHHHHHHHHHHcC-c----cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6666555443 333443311 1 111111 122233444444455555566777666655554433
No 95
>PRK10745 trkD potassium transport protein Kup; Provisional
Probab=97.39 E-value=0.079 Score=56.81 Aligned_cols=307 Identities=14% Similarity=0.126 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHH
Q 040051 160 NILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTV 239 (590)
Q Consensus 160 ~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~ 239 (590)
++.-+.+++.|....++.+=++...+. + ...+..+++++++.+..+.-+|....+++.--...+-++
T Consensus 112 l~~gDgvITPAISVLSAVEGL~v~~p~----------l---~~~Vvpit~~ILv~LF~iQ~~GT~~vG~~FgPIm~vWF~ 178 (622)
T PRK10745 112 FFYGEVVITPAISVMSAIEGLEIVAPQ----------L---DTYIVPLSIIVLTLLFMIQKHGTGMVGKLFAPIMLTWFL 178 (622)
T ss_pred HHhhccccchhHHHHHHhhcccccCCC----------C---CCccHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHH
Confidence 333345566666666665555533321 1 112456778888888888889988777776555544444
Q ss_pred HHHHHHHhhhccccCCCCCCCCC---------CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHH
Q 040051 240 VILFVIIVGFAHADASNLKPFLP---------FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMI 310 (590)
Q Consensus 240 ~~~~~~i~~~~~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~ 310 (590)
.+.++.+..+.+ +++-+..++| ++..+ +..+..++-+.+|-|+.-.=-+ +-.+|.+.++-...+.=+
T Consensus 179 ~i~~~Gi~~I~~-~P~Vl~AlnP~ya~~f~~~~~~~g-f~~LG~V~L~vTGaEALYADmG--HFG~~~Ir~aW~~~v~P~ 254 (622)
T PRK10745 179 TLAVLGLRSIIA-NPEVLHALNPMWAVHFFLEYKTVS-FFALGAVVLAITGVEALYADMG--HFGKFPIRLAWFTVVLPS 254 (622)
T ss_pred HHHHHHHHHHhc-CHHHHhHhCHHHHHHHHHhCCCce-EEEecceeeeccchHHHhhccC--CCCccceeeeehhhHHHH
Confidence 544444444443 3333333333 22222 2234456778889997643222 334566766655444423
Q ss_pred H-HHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hh
Q 040051 311 T-IIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPP-WF 388 (590)
Q Consensus 311 ~-~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f 388 (590)
. +-|+. +-+....-|. ..++|+... ..+|+.+-+.+.+.++..-+..+...++=.+..+.-+-|.+|+ ..
T Consensus 255 L~LnY~G-QgA~ll~~p~---~~~NpFf~~----~P~~~~~p~viLATlAtIIASQAvISGaFSl~~QAi~Lg~~Prl~I 326 (622)
T PRK10745 255 LVLNYFG-QGALLLKNPE---AIKNPFFLL----APDWALIPLLILATLATVIASQAVISGVFSLTRQAVRLGYLPPMRI 326 (622)
T ss_pred HHHHhcc-hHHHHhcCch---hhcCcHHHh----CChhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhCCCCCceE
Confidence 3 33333 3333322221 225666543 3345444444444343333334444444445555667799994 23
Q ss_pred hccCCC-CC---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhccCCCCccchhHHH--H
Q 040051 389 ALVHPK-TG---TPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVA-LLVRRYYVREITPRKNLLMLV--I 461 (590)
Q Consensus 389 ~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~~~~--~ 461 (590)
.+.+++ .| .|..--++......+...+.+-+.+.+..+++....+.+..+- .++.|++.+ .+.+... .
T Consensus 327 ~hTS~~~~GQIYIP~vNw~Lmv~~i~~vl~F~sS~~La~AYGiAVt~tM~iTT~L~~~v~~~~w~-----~~~~~~~~~~ 401 (622)
T PRK10745 327 IHTSEMESGQIYIPFVNWLLYVAVVIVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWH-----WNKYFVALIL 401 (622)
T ss_pred EeCCCccCCceeeHHHHHHHHHHHHeeEEEecCchHHHHHhhhhheeHhHHHHHHHHHHHHHHcC-----ccHHHHHHHH
Confidence 444433 22 4554433333333333344667778888777765555555433 333333211 1112212 2
Q ss_pred HHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHH
Q 040051 462 FLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFL 496 (590)
Q Consensus 462 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (590)
....++....+..........||+++.+.++++.+
T Consensus 402 ~~f~~id~~ff~anl~Ki~~GGW~pl~ia~v~~~i 436 (622)
T PRK10745 402 IAFLCIDIPLFSANLDKLLSGGWLPLSLGLVMFIV 436 (622)
T ss_pred HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Confidence 22334445555555555566788666655554433
No 96
>PLN00148 potassium transporter; Provisional
Probab=97.38 E-value=0.019 Score=63.01 Aligned_cols=283 Identities=11% Similarity=0.097 Sum_probs=143.6
Q ss_pred hhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCCC---------ChhhHHHHHHH
Q 040051 204 LDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPFLPF---------GSEGIFKAAAV 274 (590)
Q Consensus 204 ~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~---------g~~~~~~~~~~ 274 (590)
+..+++++++.+..+.-+|....+++..-..++-++.+..+.+..+.+.++.-+..++|. +..+ +..+..
T Consensus 197 vv~is~~ILv~LF~vQ~~GT~kVg~~FgPIm~lWf~~i~~iGiyni~~~~p~Vl~AlnP~y~~~ff~~~~~~g-~~~LGg 275 (785)
T PLN00148 197 LVLLACVILVGLFALQHCGTHRVAFMFAPIVIIWLLSIGSIGLYNIIHWNPKIIHALSPYYIIKFFRVTGKDG-WISLGG 275 (785)
T ss_pred ehhHHHHHHHHHHHHhccccHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCHHHhhhcCHHHHHHHHHhCCCce-EEeecc
Confidence 446778888888888899988777776655555555555555656666555545545442 2222 223555
Q ss_pred HHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHH
Q 040051 275 VYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVAL 354 (590)
Q Consensus 275 ~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 354 (590)
++-+.+|.|+.-.=-+ +-.+|.+.+|-...+.=+.++--+..-++....|. +.++|+... ..+++.+-+.+
T Consensus 276 V~L~iTGaEALyADlG--HFg~~~Iriaw~~~V~P~L~L~Y~GQaA~ll~~p~---~~~npFf~~----iP~~~~~P~~v 346 (785)
T PLN00148 276 ILLSITGTEAMFADLG--HFTAASIRLAFATVIYPCLVVQYMGQAAFLSKNIP---SIPNSFYDS----IPDPVFWPVFV 346 (785)
T ss_pred hheeccchhhhhhhcc--CCCccceEEeeeehHHHHHHHHHcchHHHHhcCcc---cccCcHHHh----CCchhHHHHHH
Confidence 6788899997644333 33456666665544444443333333333333332 124565433 33344444444
Q ss_pred HHHHHHHHHHHHhhhchhHHHHHHHhcCCCch-hhhccCCCC-C---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040051 355 GALKGMTTVLLVGALGNARYTTHIARAHMIPP-WFALVHPKT-G---TPINANLLIVLASALIALFSGLDILSALLSLST 429 (590)
Q Consensus 355 ~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~-~f~~~~~~~-~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~ 429 (590)
.+.++..-+..+...++=.+..+.-+-|.+|+ ..-+++++. | .|..--++.....++...+.+.+.+.+..+++.
T Consensus 347 lAtlAtIIASQA~ISg~FSi~~Qai~Lg~fPrvkIvhTS~~~~GQIYIP~vNw~Lmv~~i~vv~~F~~s~~la~AYGiAV 426 (785)
T PLN00148 347 IATLAAIVGSQAVITATFSIVKQCHALGCFPRVKVVHTSKHIYGQIYIPEINWILMILTLAVTIGFRDTTLIGNAYGLAC 426 (785)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccCCceeeHHHHHHHHHHHHHhheeeccchhHHHhhhhhe
Confidence 33333333333334344444445556789994 233444332 2 466544444443334444567777887777766
Q ss_pred HHHHHHHHH-HHHHHhhhccCCCCccchhHHH--HHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHH
Q 040051 430 LFVFMMMAV-ALLVRRYYVREITPRKNLLMLV--IFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGIS 502 (590)
Q Consensus 430 ~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (590)
....++..+ ..++.+...+ .+.+... ..++..+-...+..........||+++.+.+++.. +...|.
T Consensus 427 ~~vM~iTT~L~~lV~~~~W~-----~~~~~~~~f~~~F~~ie~~f~sa~l~Ki~~GGW~pl~ia~v~~~-iM~~W~ 496 (785)
T PLN00148 427 MTVMFITTFLMALVIIFVWQ-----KSIILAALFLLFFGFIEGVYLSAALMKVPQGGWVPLVLSAIFMS-IMYIWH 496 (785)
T ss_pred eeHHHHHHHHHHHHHHHHhC-----ccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHH-HHHHHH
Confidence 555444433 2223332211 0111111 11223344444445555555677766655554433 333443
No 97
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=97.18 E-value=0.34 Score=49.28 Aligned_cols=316 Identities=17% Similarity=0.185 Sum_probs=156.5
Q ss_pred HHHhhhhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHH
Q 040051 83 WFGFGAVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAG 159 (590)
Q Consensus 83 ~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~ 159 (590)
++.++.-.|.|-..-|...-.. +|.. +.++++++++..=.....- .-.+||.+.=..+..||..|.+..-
T Consensus 12 fmLFalFFGAGNlIFPP~LG~~-aG~~~~~A~lGFllTgVglPlLgiIa------~a~~g~~~~~l~~~i~~~fg~~f~~ 84 (431)
T COG1114 12 FMLFALFFGAGNLIFPPMLGLH-AGEHVWPAILGFLLTGVGLPLLGIIA------VALYGGGVESLATRIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHhcCCCccCChhhhhh-cCccHHHHHHHHHHHHhhHHHHHHHH------hhccCCCHHHHhhhccchHHHHHHH
Confidence 3344444677776666655444 7753 5666666665532222211 2234555555666778887776653
Q ss_pred HHHHHH--HHHHH-HHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHH
Q 040051 160 NILLES--IVGGA-AVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAI 236 (590)
Q Consensus 160 ~~~l~~--~~~~a-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~ 236 (590)
...+.- ....+ ....++..-+....+.. +.....+..+++..+..++.+..-|...++-.+++-+
T Consensus 85 ~iyLsIGPffAiPRt~~vsfe~~i~p~~~~~------------~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPi 152 (431)
T COG1114 85 AIYLSIGPFFAIPRTGAVSFEVGISPLLGDS------------SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPI 152 (431)
T ss_pred HHHHHhcccccCCcccchhHHHhhhcccCCC------------cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHH
Confidence 322211 00000 01111111111111111 1112446677777888888899999999999999999
Q ss_pred HHHHHHHHHHhhhccccCCCCC---CCCCCC-hhhHHHH----HHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHH
Q 040051 237 NTVVILFVIIVGFAHADASNLK---PFLPFG-SEGIFKA----AAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMS 308 (590)
Q Consensus 237 ~i~~~~~~~i~~~~~~~~~~~~---~~~~~g-~~~~~~~----~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~ 308 (590)
+++.++++++..+.+.+..--. .+.+.. ..|+..+ =..+...|...-.-+.-..-.+++ |+..|-.+.+-+
T Consensus 153 lLv~l~il~i~~~~~p~g~~~~a~~~y~~~pf~~GfleGY~TMDaLAal~FgivIv~alk~~g~~~~-~~~~~~~~~agl 231 (431)
T COG1114 153 LLVLLLILVIAAIIPPAGPISAASGAYQSQPFSKGFLEGYLTMDALAALAFGIVIVNALKSKGVTTK-KQIIKYTIKAGL 231 (431)
T ss_pred HHHHHHHHHHHHHhCCCCCcccccHHHHhChHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHH
Confidence 9998888888776654322110 111111 1111111 122333443333333333334443 345555555544
Q ss_pred HHHHHHHHHHHHHhhccc--CCCCC--CC--cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcC
Q 040051 309 MITIIYCLMALSLCVMQP--YTDID--PN--AAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAH 382 (590)
Q Consensus 309 ~~~~~y~l~~~~~~~~~~--~~~~~--~~--~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~ 382 (590)
+..+...+.-..+....+ .+... ++ .-+.+..+...++....++.+.+.++|+++..+...+++...
T Consensus 232 Ia~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF------- 304 (431)
T COG1114 232 IAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFF------- 304 (431)
T ss_pred HHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 444433333333222221 11111 11 123344445566778888999999999999888777766654
Q ss_pred CCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040051 383 MIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVF 433 (590)
Q Consensus 383 ~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (590)
+|+-||-.-..++ .+..+++.++.- ..++.+..+..-.....|
T Consensus 305 ------~~~~p~~SY~~~v-~if~i~sflvan-~GL~~Ii~isvPvL~~iY 347 (431)
T COG1114 305 ------SKLVPKLSYKTWV-IIFTLISFLVAN-LGLEQIIKISVPVLTAIY 347 (431)
T ss_pred ------HHhcccccHHHHH-HHHHHHHHHHHH-hhHHHHHHHHHHHHHHHh
Confidence 3333321112222 223344433332 335666666655445555
No 98
>PRK09928 choline transport protein BetT; Provisional
Probab=96.72 E-value=1.3 Score=48.63 Aligned_cols=91 Identities=15% Similarity=0.024 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHH---HHH
Q 040051 348 AKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGLDIL---SAL 424 (590)
Q Consensus 348 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l---~~~ 424 (590)
+..++.+..++..+....+..-+.+-++-.++..|.-|+ .-.|+...=.++++ .+++++.+.+.+.++.+ .-+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~---~~pp~~~RifW~v~-ig~la~~LL~~GGL~aLQt~sii 482 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDIN---SDAPNWLRVFWSVA-IGLLTLGMLMTNGISALQNTTVI 482 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCC---CCCCcceeeHHHHH-HHHHHHHHHHhcCHHHHHHHHHH
Confidence 334444444444444555556666777777776553220 00112222334444 33444444455545544 444
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040051 425 LSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~ 442 (590)
.++.+.+..++.+.++++
T Consensus 483 ~alPf~~I~ll~~~sl~k 500 (679)
T PRK09928 483 MGLPFSFVIFFVMAGLYK 500 (679)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555666666677665
No 99
>PRK09950 putative transporter; Provisional
Probab=96.66 E-value=1.2 Score=47.45 Aligned_cols=24 Identities=13% Similarity=0.064 Sum_probs=20.0
Q ss_pred cccCCHHHHHHHHhhhhhcchhhh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFV 96 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~ 96 (590)
|.++|.++.+++.++.-+|.|+..
T Consensus 81 kPefS~~sW~aMlf~aG~G~gllf 104 (506)
T PRK09950 81 KPEYSTLSWLFMFICAGLGSSTLY 104 (506)
T ss_pred CCCccchhHHHHHHHHhhhhHHHH
Confidence 678999999999999888888743
No 100
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=96.56 E-value=0.97 Score=45.17 Aligned_cols=246 Identities=12% Similarity=0.054 Sum_probs=137.9
Q ss_pred HHHHHHHHHHH-HHHHHHHhhhcccc------cccchhhhH-HHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 040051 113 SYVASGVSAML-SVFCYTEFAIEIPV------AGGSFAYLR-IELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLL 184 (590)
Q Consensus 113 ~~ll~~~~~~~-~a~~~ael~~~~P~------~Gg~y~~~~-~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~ 184 (590)
+|++-..+..+ +.+.+.-++.++.. +=-..++.+ |.-+++.-++.+....+.+...+.+.-.+.+..++...
T Consensus 73 gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAltI~D~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~ 152 (473)
T COG4145 73 GWVLLAMIQVPTVWLALGVLGKKFAILAREYNALTINDLLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL 152 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCeeHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 45444444444 44555555555442 112344443 44678888999999999999999999999999999888
Q ss_pred cCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-CC-------C
Q 040051 185 NREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHAD-AS-------N 256 (590)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-~~-------~ 256 (590)
+.+-.. ...+...........-|.|.....-.+=..++++..+++.+..+...+ .+ +
T Consensus 153 gidY~t---------------gL~ifa~~V~iYt~fGGFRAvvltD~IQG~vmligtv~Lf~~~i~~~GG~~~av~tl~~ 217 (473)
T COG4145 153 GIDYTT---------------GLLIFAVSVAIYTAFGGFRAVVLTDTIQGLVMLIGTVVLFVGVIYAGGGLSNAVETLTT 217 (473)
T ss_pred CCCchh---------------hHHHHHHHHHHHHhhcceeeeehHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHh
Confidence 754211 111122223334445677877776666666666655544444333221 10 1
Q ss_pred CC--CCCCCCh-----hhHHHH-HHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHH--Hhhccc
Q 040051 257 LK--PFLPFGS-----EGIFKA-AAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALS--LCVMQP 326 (590)
Q Consensus 257 ~~--~~~~~g~-----~~~~~~-~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~--~~~~~~ 326 (590)
.. -..|.+. ..++.. ...+++.-.|.-....---..|| +|.+.++++.+..++.++-+.+-.+ ....+-
T Consensus 218 iDp~lv~P~~~~~~l~~~Fm~Sfwilv~~gvlglP~t~vr~ia~kD-skaih~gmiigt~vi~il~~gmhl~G~~graVi 296 (473)
T COG4145 218 IDPGLVTPQGADDILDPPFMASFWILVCFGVLGLPHTAVRCIAFKD-SKAIHRGMIIGTIVIAILMLGMHLAGALGRAVI 296 (473)
T ss_pred CCccccCCCCCcccccchHHHHHHHHHHHHHhcCcHHHHHHHhccc-hhHHhcCcchHHHHHHHHHHHHHHhhhhhhhhc
Confidence 11 1122221 122222 23344555555555544455688 5889999999988888776655444 122222
Q ss_pred CCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHH
Q 040051 327 YTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARY 374 (590)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~ 374 (590)
+|--..|.-.+.++-....|...-++..+.+.+.+++.++.+.-.|-.
T Consensus 297 Pdlt~~D~Vip~lalkvlpp~~agifl~apmaAiMSTIds~L~~~sst 344 (473)
T COG4145 297 PDLTVVDLVIPTLALKVLPPFAAGIFLAAPMAAIMSTINSQLLQSSST 344 (473)
T ss_pred CCCCccchhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222223444444444555566666666777777788887776655544
No 101
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=96.51 E-value=1.4 Score=46.46 Aligned_cols=98 Identities=23% Similarity=0.275 Sum_probs=52.1
Q ss_pred HHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcC-CCchhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 040051 337 SVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAH-MIPPWFALVHPKTGTPINANLLIVLASALIALF 415 (590)
Q Consensus 337 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~-~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~ 415 (590)
..+++....-++..+..+..++....-..+..-+.+=++-.++..| .-|+...|+- ++ ++.++++..+.+.
T Consensus 392 ~alf~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~~~pp~~~r~~-------W~-v~~~~ia~~lL~~ 463 (537)
T COG1292 392 TALFQVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGGEDPPRWVRVF-------WG-VLIGLIAAVLLLI 463 (537)
T ss_pred hHHHHHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCCCCChHHHHHH-------HH-HHHHHHHHHHHHh
Confidence 3344433333344444544444444455666677777887777655 3343333322 33 3445555555555
Q ss_pred hhHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 040051 416 SGLDILS---ALLSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 416 ~~~~~l~---~~~~~~~~~~~~~~~~~~~~ 442 (590)
+.++.+- -+....+.+..++.+.++++
T Consensus 464 ggl~aLqt~~ii~alPF~~vll~~~~sl~k 493 (537)
T COG1292 464 GGLEALQTAAIITALPFSLVLLVMMFSLIK 493 (537)
T ss_pred CCHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 5554444 44444556666777777776
No 102
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=96.49 E-value=1 Score=46.65 Aligned_cols=300 Identities=12% Similarity=0.105 Sum_probs=140.0
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAY 144 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~ 144 (590)
..+.-+|..|+++-+.+=.+..++.+.+...+..+. -|.. .+...+++-++.......-+ +.|..|+-
T Consensus 48 Pv~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~--lGLswwq~~~tv~vG~~~~~~f~~lns-------~~G~~yhI 118 (572)
T KOG2466|consen 48 PVPPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALE--LGLSWWQTWITVWVGYLFTAIFLVLNS-------RPGSDYHI 118 (572)
T ss_pred cCCcccccccHHHHHHHHHhccccccceeehhhHHh--ccCCHHHHHHHHHHHHHHHHHHHHHcc-------CCCccccc
Confidence 345568899999999887777777777766666554 3532 55555555444433332222 23444443
Q ss_pred h-----HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----CC---CCccccccccccccCchhHHHHHHH
Q 040051 145 L-----RIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLN----RE---PNSLRIHTNLREGYNLLDPIAVAVL 212 (590)
Q Consensus 145 ~-----~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (590)
. +..||-..+-.--..-.+.....-+..+...++.++.++. .. ++.. + -+.......+..+++-
T Consensus 119 sFpv~sR~sFGiygS~~pIi~R~vma~vwYg~~awiGgecV~lmL~si~~~~~hipntl---~-~~~~tt~e~i~FfIFw 194 (572)
T KOG2466|consen 119 SFPVLSRSSFGIYGSLWPIINRVVMACVWYGVNAWIGGECVQLMLKSIFKSFSHIPNTL---G-KPGTTTYEFIGFFIFW 194 (572)
T ss_pred ceeeeeeeehhhhHhHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHhhhhhcCcccc---C-CCCCchHHHHHHHHHH
Confidence 2 2244433222222222333334444555555555554432 21 1111 1 1111111223333444
Q ss_pred HHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCC---CCCCCCCCChhhHHHHHHHHHHhhcchhhh----
Q 040051 213 ATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADAS---NLKPFLPFGSEGIFKAAAVVYFAYGGFDNI---- 285 (590)
Q Consensus 213 ~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~G~e~~---- 285 (590)
++...+.+++.....++..+-.+......+.+.+..+.+.+.. ...+-...|..-.+.-+.....++.++...
T Consensus 195 v~s~~~~~~~p~~ir~lf~~ka~~t~fA~~g~LIw~l~kAhG~G~l~~~~st~~gs~~aWa~~~~i~~~~~~fstl~~N~ 274 (572)
T KOG2466|consen 195 VASLPFYWFPPYKIRHLFTWKAVLTPFAAFGFLIWLLKKAHGLGHLFDSKSTVSGSAHAWAFVRSIMSCIANFSTLIVNA 274 (572)
T ss_pred HHhhheeeccHHHhhhHHHHHHhhhHHHHHHHHHHHHHhcCCccccccCCCcccccchhHHHHHHHHHHHhccchhhccC
Confidence 4444445567777777777666666666666666666654431 111122222211222222344555555443
Q ss_pred hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc--cCCCCCCC---cHHHHHHH-------HhChhHHHHHHH
Q 040051 286 ATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQ--PYTDIDPN---AAYSVAFQ-------RVGMKWAKYLVA 353 (590)
Q Consensus 286 ~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~--~~~~~~~~---~~~~~~~~-------~~~~~~~~~i~~ 353 (590)
...+.-.|+|.. .+.+-+.++.+.. .+..+ +...+ ..+.+-.. +|+ +++. ..|.+....++.
T Consensus 275 pDFsRF~ksp~a-~~~~Ql~alp~~~---~l~~l-iGVlv~sa~~~iYG~~~W~Pl-dil~~~l~~~y~~G~RAgvFfi~ 348 (572)
T KOG2466|consen 275 PDFSRFAKSPNA-IWWGQLIALPLPF---GLTPL-IGVLVTSASKIIYGTNYWSPL-DILNQWLDTNYSAGARAGVFFIG 348 (572)
T ss_pred chhHhhcCCCCc-cchhhhhhhhhhh---hhhhh-eeeEehhhhhhhhcccccCHH-HHHHHHhccccccccchhhhHHH
Confidence 334444555532 2333333222222 22111 11111 11222221 343 3333 235567778888
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhc
Q 040051 354 LGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFAL 390 (590)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~ 390 (590)
++..++.++...+.-..++ ++.-.+++||++.-
T Consensus 349 ~~f~laql~~NISan~vaa----gnDl~~L~PkyinI 381 (572)
T KOG2466|consen 349 FGFALAQLGTNISANSVAA----GNDLSALLPKYINI 381 (572)
T ss_pred HHHHHHHHhcchhcccccc----chhhHhhCcceEEe
Confidence 8888888776554432222 23334688887754
No 103
>COG3158 Kup K+ transporter [Inorganic ion transport and metabolism]
Probab=95.49 E-value=4.2 Score=43.11 Aligned_cols=329 Identities=15% Similarity=0.136 Sum_probs=151.6
Q ss_pred hcchhhhcchHhHhhccC--h--H---HHHHHHHHHHHHHHHHHHHHHhhhcc--cccccchhhhH---HHhchhh----
Q 040051 90 IGAGIFVLTGQEAHKHAG--P--A---IVLSYVASGVSAMLSVFCYTEFAIEI--PVAGGSFAYLR---IELGDFA---- 153 (590)
Q Consensus 90 ig~gi~~~~~~~~~~~~G--~--~---~~~~~ll~~~~~~~~a~~~ael~~~~--P~~Gg~y~~~~---~~~g~~~---- 153 (590)
||++.....-..+..+.| . . .+++.++ ..+++.+..=|.-+.-+- ...||...... +..++..
T Consensus 30 IGTSPLYa~~e~~~~~~~~~v~~~~VlGvlSLi~-WtLtlIVTiKYv~~vlRADN~GEGGilsL~aL~~~~~~~~~~~l~ 108 (627)
T COG3158 30 IGTSPLYALREALSGQGGLGVSRDEVLGVLSLII-WTLTLIVTIKYVLFVLRADNNGEGGILSLMALARRAAPRRTALLI 108 (627)
T ss_pred CCCChHHHHHHHhccCCCCCCCcceeeeHHHHHH-HHHHHHHHHhhheeEEecCCCCCchhhhHHHHHHhhcCCCchhhh
Confidence 677666666555554344 1 1 2222222 222333333333333332 34677666543 4444332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHHH
Q 040051 154 --AFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLNW 231 (590)
Q Consensus 154 --g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~~ 231 (590)
|.+-+-.++-+.+++.|....++.+-+....+..+ ..+..+++++++.+..+.-+|....+++.-
T Consensus 109 ~~g~iGaalf~GD~vITPAiSVlSAvEGL~iv~p~~~-------------~~Vvpitl~IL~~LF~iQ~~GT~~Vg~~FG 175 (627)
T COG3158 109 ILGLIGAALFYGDAVITPAISVLSAVEGLEIVTPALD-------------PYVVPITLIILVLLFLIQRFGTGRVGKLFG 175 (627)
T ss_pred hHHHHhHHHHhcccccchhHHHHHHhccccccCcccc-------------CccHHHHHHHHHHHHHHhcccchhhhhhhc
Confidence 33333344445556666666666665554432221 125567788888888888899877777654
Q ss_pred HHHHHHHHHHHHHHHhhhcc--ccCCCCCCCCC---------CChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchh
Q 040051 232 IASAINTVVILFVIIVGFAH--ADASNLKPFLP---------FGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIP 300 (590)
Q Consensus 232 ~~~~~~i~~~~~~~i~~~~~--~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p 300 (590)
- ++++-.+.+...|+.+ .+++-....+| +++.+++ .+..++-+.+|-|+.-.=-+.. -+|.+.
T Consensus 176 P---Vm~lWF~~l~~~Gl~~i~~~p~IL~AiNP~yAi~fl~~~~~~gf~-vLGaVfLavTGaEALYADmGHf--Gr~pI~ 249 (627)
T COG3158 176 P---VMLLWFLALAVLGLINIIDDPEILRAINPYYAVHFLLEEGFVGFF-VLGAVFLAVTGAEALYADMGHF--GRKPIR 249 (627)
T ss_pred c---HHHHHHHHHHHHHHHHHhcCHHHHHHhChHHHHHHHHhCCceEEE-EeeeeeeeeccHHHHHhhcccc--CCccHH
Confidence 3 3333333344444443 23322233333 2222221 1334566778888764332322 245554
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhccc-CCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHH
Q 040051 301 IGLLGSMSMITIIYCLMALSLCVMQP-YTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIA 379 (590)
Q Consensus 301 ~a~~~~~~~~~~~y~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~a 379 (590)
+|-.....= .++.++.-++..- .+.-...+|+...+ ..|+.+-+.+....+..-+..+...++=-+..+.-
T Consensus 250 ~AWf~vv~P----~L~LNY~GQGA~vL~~p~a~~npFF~~~----P~~aliP~viLAT~ATVIASQAvISGaFSLtrQAi 321 (627)
T COG3158 250 VAWFFVVLP----CLLLNYFGQGALLLSNPEAIGNPFFLLA----PDWALIPLVILATAATVIASQAVISGAFSLTRQAI 321 (627)
T ss_pred HHHHHHHHH----HHHHHHccccceeccCcccccCcHHHhC----hhhHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence 443332221 2222222221111 11112245644333 23332222222222222122222223333334445
Q ss_pred hcCCCchh-hhccCCC-CC---CchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhh
Q 040051 380 RAHMIPPW-FALVHPK-TG---TPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAV-ALLVRRYY 446 (590)
Q Consensus 380 rd~~lP~~-f~~~~~~-~~---~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~r~~ 446 (590)
|-|.+|+. ..+.+++ .| .|..-.++...+.+++..+.+-+.+.+..+++......+..+ ...+.|++
T Consensus 322 ~Lg~lPrm~I~~TSe~~~GQIYiP~VN~~L~~~V~~~vl~F~~S~~LAaAYGiAVTgtM~iTt~L~~~~~~~~ 394 (627)
T COG3158 322 RLGYLPRMRIRHTSETESGQIYIPAVNWLLLVAVVFVVLGFGSSSNLAAAYGIAVTGTMVITTILLTVVMRKK 394 (627)
T ss_pred HhCCCCceEEEecCCcccceEEehHHHHHHHHHHhheeeEecChHHHHHhhChheeehhHHHHHHHHHHHHHh
Confidence 77999942 3344433 22 466655554444444444567777887777766555555544 34445554
No 104
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=95.26 E-value=0.043 Score=53.63 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=131.8
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHH----HHHHHHhhhcc--cccccchhhh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLS----VFCYTEFAIEI--PVAGGSFAYL 145 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~----a~~~ael~~~~--P~~Gg~y~~~ 145 (590)
-+.+++.++.-.=....+-|.=+..+|-.+. . +|..++.+.+..+.+...+ .-|+.|=...- -+.--.|.-+
T Consensus 113 ~~~kI~a~qAaWNVTNAIQGMFivgLP~Avl-h-GGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaI 190 (524)
T KOG4303|consen 113 ASEKISALQAAWNVTNAIQGMFIVGLPIAVL-H-GGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAI 190 (524)
T ss_pred CCCccHHHHHhhhhhhhhheeeEeccceeee-E-cchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHH
Confidence 3466888887766666555544443444332 2 6665666555554443332 23344322110 0111234444
Q ss_pred HHH-hchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---CccccccccccccCchhHHHHHHHHHHHHHHh
Q 040051 146 RIE-LGDFAA-FITAGNILLESIVGGAAVARAWTSYFTTLLNREP---NSLRIHTNLREGYNLLDPIAVAVLATAATIAS 220 (590)
Q Consensus 146 ~~~-~g~~~g-~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (590)
... ++|.+| ..+.....+..+.++-.+....++.++..++..+ ..| . .+.-+. ++..--+
T Consensus 191 A~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sW------------m-~i~~a~--LLpc~FL 255 (524)
T KOG4303|consen 191 ADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASW------------M-MITSAS--LLPCSFL 255 (524)
T ss_pred HHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccch------------h-hhhhHH--HhhhHHH
Confidence 444 666665 5666677788888888899999999988876422 111 1 222222 2222234
Q ss_pred hchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCC-CCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCch
Q 040051 221 ISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNLKPF-LPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDI 299 (590)
Q Consensus 221 ~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~ 299 (590)
...|..+++..+.++.++++-++++...+.....-.|... +.-....+=..+.++.|+|+..--..++-+.+|||++ .
T Consensus 256 k~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~-F 334 (524)
T KOG4303|consen 256 KDLKIVSRLSFFCTISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQ-F 334 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhH-h
Confidence 5778899999999999988877777666654332222210 0000001111233456888888888899999999954 4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh
Q 040051 300 PIGLLGSMSMITIIYCLMALSLC 322 (590)
Q Consensus 300 p~a~~~~~~~~~~~y~l~~~~~~ 322 (590)
---+-++-+...++=.++.....
T Consensus 335 n~Ml~WsHIAAaVfK~~Fg~~~f 357 (524)
T KOG4303|consen 335 NVMLKWSHIAAAVFKVVFGMLGF 357 (524)
T ss_pred eeeeehHHHHHHHHHHHHHHhee
Confidence 45566676666666555544433
No 105
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=95.15 E-value=6.1 Score=42.99 Aligned_cols=100 Identities=15% Similarity=0.157 Sum_probs=56.2
Q ss_pred HHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc---------CCCCCCCCCCChhhHHHHHHHHHHhhc-chhhhhh
Q 040051 218 IASISTRKTSVLNWIASAINTVVILFVIIVGFAHAD---------ASNLKPFLPFGSEGIFKAAAVVYFAYG-GFDNIAT 287 (590)
Q Consensus 218 i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~---------~~~~~~~~~~g~~~~~~~~~~~~~~~~-G~e~~~~ 287 (590)
....|+|..+|+.......-.+.++++.+-++...+ ..++..+.+ ..-+..++.-++|+.. |+-....
T Consensus 194 ~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~--~~vW~~A~~Q~ffsl~ig~G~~it 271 (523)
T PF00209_consen 194 GIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLD--PKVWIAALGQVFFSLSIGFGIMIT 271 (523)
T ss_dssp TTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTS--HHHHHHHHHHHHHHTTTTSSHHHH
T ss_pred heEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhH--HHHHHHHHHHHhhccCCCcceEEE
Confidence 345788888888776665444444444443332211 012222221 2345667778888874 7888888
Q ss_pred hhhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 040051 288 MAEETKNPSRDIPIGLLGSMSMITIIYCLMALS 320 (590)
Q Consensus 288 ~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~ 320 (590)
++.-.|+ ++|++|...........+.++..++
T Consensus 272 ~~Sy~~~-~~n~~~~a~~v~~~~~~~sllag~~ 303 (523)
T PF00209_consen 272 YGSYNKF-KNNIFRDALIVAFINTLVSLLAGLV 303 (523)
T ss_dssp HHTTS-T-TS-SHHHHHHHHHHHHHHHHTTGTH
T ss_pred EcCcCCC-CccccccceEEEcCchhhhHhHHHH
Confidence 8887776 6788887777776666665554443
No 106
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=94.86 E-value=6.7 Score=41.95 Aligned_cols=24 Identities=13% Similarity=0.184 Sum_probs=20.2
Q ss_pred cccCCHHHHHHHHhhhhhcchhhh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFV 96 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~ 96 (590)
|.+++.++.+++.+++-+|+|+..
T Consensus 83 kPefs~~sW~aMlf~aG~G~gllf 106 (504)
T PRK03356 83 KPEFSTASWIFMMFASCTSAAVLF 106 (504)
T ss_pred CCCccchHHHHHHHHHhhhhhhhh
Confidence 678999999999999888888743
No 107
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=94.74 E-value=6.6 Score=41.39 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=18.0
Q ss_pred cccCCHHHHHHHHhhhhhcchhh
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIF 95 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~ 95 (590)
|.+++.++.+++.+++-+|.|+.
T Consensus 34 kPefS~~sW~aMlf~aG~G~gll 56 (453)
T TIGR00842 34 KPEFSTLSWLAMLFAAGMGIGLM 56 (453)
T ss_pred CCCCcchHHHHHHHHHhhhhhhh
Confidence 56788888888888888887764
No 108
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.99 E-value=0.68 Score=48.47 Aligned_cols=65 Identities=20% Similarity=0.116 Sum_probs=42.9
Q ss_pred HHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC---C-hhhHHHHHHHHHHHHHHHHHHh
Q 040051 494 WFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSL---G-YQAFVRFGICTLVMLVYYFFFG 560 (590)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~i~~~~y~~~~ 560 (590)
.+......+.+.++++.+|++|+|.+ .|.+.++.+++++... + .....+....++.|+.+|+..-
T Consensus 372 ~l~~~gll~lR~k~p~~~rPiKvpl~--~p~~~~~~~i~lvvip~~~~~~~~~~ig~~i~l~G~~~Y~~~i 440 (479)
T KOG1287|consen 372 GLSMAGLLWLRWKHPPLPRPIKVPLF--IPILFLLICIFLVVIPIISDFPVETLIGIGIILSGVPFYFLFI 440 (479)
T ss_pred HHHHHHHHHHHhhCCCCCCCEeeeee--hHHHHHHHHHHHhheeeeecCCccchhHHHHHHHhhhhheEEE
Confidence 33445556667788889999999976 4555566666554332 2 2225666777788888887644
No 109
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=93.62 E-value=10 Score=39.33 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=31.4
Q ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHH
Q 040051 336 YSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHI 378 (590)
Q Consensus 336 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ 378 (590)
....++..-+++...++.++.+.+-.+|..+..++..=++...
T Consensus 282 ~~~~L~p~~G~~a~~lF~igLlaAG~sS~it~~~ag~~v~~gf 324 (390)
T TIGR01197 282 IGVLLGCLFSPAAGYIFAVGLLAAGQSSGMVGTYSGQFVMEGF 324 (390)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 3445555666788899999999998888888887665555443
No 110
>COG4146 Predicted symporter [General function prediction only]
Probab=92.23 E-value=14 Score=37.19 Aligned_cols=238 Identities=11% Similarity=0.004 Sum_probs=111.7
Q ss_pred cchhhhHHHhchhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHH-HHHHHHHH
Q 040051 140 GSFAYLRIELGDFAAFITAGNILLESI-VGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAV-AVLATAAT 217 (590)
Q Consensus 140 g~y~~~~~~~g~~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 217 (590)
-.-++.++.+++.-.-+...++.++|. ...+...++.+..+++.++.... .+. ..... .+...+ +-++-+..
T Consensus 104 TIPdFlE~RfD~~TR~Iis~lFLi~y~~~flPtvLYsGAla~nsiF~l~~v-~~I----S~g~~-i~~~viaiG~~g~~Y 177 (571)
T COG4146 104 TIPDFLEERFDKTTRMIISFLFLIAYGVCFLPTVLYSGALALNSIFHLGEV-LQI----SHGAA-IWLLVIAIGLAGILY 177 (571)
T ss_pred cchHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHhhhhchHhh-hCc----CcchH-HHHHHHHHHHHHHHH
Confidence 367889999999999999998888884 56777777788888888765321 000 00000 111111 11222334
Q ss_pred HHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCC---------------CC----CCCCCChhhHHHHHHHHHHh
Q 040051 218 IASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASN---------------LK----PFLPFGSEGIFKAAAVVYFA 278 (590)
Q Consensus 218 i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~---------------~~----~~~~~g~~~~~~~~~~~~~~ 278 (590)
...-|.|..+.-..+-.+..++.-+.+=+.++.+.+..+ +. +-.+..|...+.++...=+.
T Consensus 178 ai~GGLkA~AvsDtiNgigLviGgLlvPifaLi~lG~Gsfa~G~~~itt~h~eKlNaIGg~~d~vPw~a~fTGll~vN~F 257 (571)
T COG4146 178 AIIGGLKAMAVSDTINGIGLVIGGLLVPIFALIALGKGSFAQGIEQITTVHAEKLNAIGGPTDPVPWGAAFTGLLLVNTF 257 (571)
T ss_pred HHHcchhheeeccccchhhHhhhhHHHHHHHHHhhcCccHhhchhhhhccCHHHhcccCCCCCCCcHHHHHHhHhhhhee
Confidence 445677766554443333333332222222222211111 10 11223455566666554333
Q ss_pred hc----chhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHH
Q 040051 279 YG----GFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVA 353 (590)
Q Consensus 279 ~~----G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~ 353 (590)
|- |+-.=+-.+.+.+.-+|-+-.+-..-+....++-+-..++.-.. .++. .+..++....+.-...+.-++.
T Consensus 258 YWcTNQ~IvQRtLaak~LaeGQKG~Llaa~fk~~~pl~LvLPGliafhly---gdL~~aDmaYP~LVn~VlPv~l~GFf~ 334 (571)
T COG4146 258 YWCTNQGIVQRTLAAKSLAEGQKGALLAAVFKMLDPLVLVLPGLIAFHLY---GDLPKADMAYPTLVNNVLPVPLVGFFG 334 (571)
T ss_pred eeeccHHHHHHHHhhhhhhccccccHHHHHHHHhchHHhhhhHHHHHHHh---ccCCccccccHHHHHhccchHHHHHHH
Confidence 32 22222333444555555444333333333333333222222111 1122 2233344444444444444555
Q ss_pred HHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhc
Q 040051 354 LGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFAL 390 (590)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~ 390 (590)
....-+.+++.|+.+.+++-+. .| +..|+.+.+
T Consensus 335 AvLFGAilStFN~fLNSa~Tlf-~~---diy~~I~k~ 367 (571)
T COG4146 335 AVLFGAILSTFNGFLNSASTLF-SM---DIYRRIIKQ 367 (571)
T ss_pred HHHHHHHHHHHHHHhhhhhHHh-hh---hhhhHhhcC
Confidence 5555566677777776666543 32 345555443
No 111
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=91.99 E-value=20 Score=38.53 Aligned_cols=114 Identities=15% Similarity=0.186 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHhhhccccCCCC-CC-CCCC-----ChhhHHHHHHHHHHh
Q 040051 206 PIAVAVLATAATIASISTRKTSVLNWIASAINTVVILFVIIVGFAHADASNL-KP-FLPF-----GSEGIFKAAAVVYFA 278 (590)
Q Consensus 206 ~~~~~~~~~~~~i~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~~-~~-~~~~-----g~~~~~~~~~~~~~~ 278 (590)
+..+++.+++.+..+.|+|.+||+..+.+..-.+++.++.+-+....+..+. .- ..|+ ....+..+..-++++
T Consensus 256 lc~~lv~~liyf~~~kG~kssGKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffs 335 (629)
T KOG3659|consen 256 LCLVLVWLLIYFSLWKGVKSSGKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFS 335 (629)
T ss_pred HHHHHHHHHHHHHHhccccccceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhh
Confidence 3444445556677788999999986655555433333333333321111111 11 1111 123455566666666
Q ss_pred h-cchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHH
Q 040051 279 Y-GGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALS 320 (590)
Q Consensus 279 ~-~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~ 320 (590)
. .|+.....++.-.|- +.|.-|=.+..-++..+.+++..++
T Consensus 336 lg~GfG~L~AfaSyn~F-~NNc~rDAll~S~in~~ts~~sgfv 377 (629)
T KOG3659|consen 336 LGPGFGVLIAFASYNKF-HNNCYRDALLTSIINCLTSFLSGFV 377 (629)
T ss_pred cCccchhhhhhhhhccc-ccchhhhhHHHHHHHHHHHHHHHHH
Confidence 5 366666666655544 3444454444444455555544444
No 112
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=90.67 E-value=0.06 Score=50.86 Aligned_cols=19 Identities=21% Similarity=0.216 Sum_probs=0.0
Q ss_pred ccCCCCCCchHHHHHHHHH
Q 040051 390 LVHPKTGTPINANLLIVLA 408 (590)
Q Consensus 390 ~~~~~~~~P~~ai~~~~~~ 408 (590)
|++||--.|...+.+..++
T Consensus 13 ~r~pr~p~~~a~l~~~~ll 31 (381)
T PF05297_consen 13 RRPPRCPQPHASLLFGLLL 31 (381)
T ss_dssp -------------------
T ss_pred CCCCCCCCcchhHHHHHHH
Confidence 5667766777766665443
No 113
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=90.63 E-value=31 Score=38.12 Aligned_cols=60 Identities=18% Similarity=0.249 Sum_probs=39.4
Q ss_pred CHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHH----HHHHHHHHHHHHHHhhhccc
Q 040051 77 TWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVA----SGVSAMLSVFCYTEFAIEIP 136 (590)
Q Consensus 77 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll----~~~~~~~~a~~~ael~~~~P 136 (590)
+..+.++-+++..+|.|-+.+.+....+.||.+-++.|++ .++-.+..=+++++..++-|
T Consensus 39 ~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~ 102 (629)
T KOG3660|consen 39 SKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGP 102 (629)
T ss_pred hHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCCh
Confidence 6788888899999999999877777766566553333433 33334445556666655544
No 114
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=89.55 E-value=8.5 Score=41.60 Aligned_cols=223 Identities=13% Similarity=0.068 Sum_probs=112.6
Q ss_pred ccchhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHH
Q 040051 139 GGSFAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATI 218 (590)
Q Consensus 139 Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 218 (590)
...|+|.+..|++..-.+....+.+..+...+...+.-+..++...+.+-. . ...+.........
T Consensus 108 ~~~~eYl~~Rf~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~~~~--------------l-~~~~~~~ic~~YT 172 (585)
T KOG2349|consen 108 TTMYEYLEKRFGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGINLY--------------L-IVVILGLICVFYT 172 (585)
T ss_pred eehhHHHHHHhcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhccCce--------------e-ehHHHHHHHHHHH
Confidence 368999999999986666666777666666666666666666666543211 0 1111222333444
Q ss_pred HhhchhhhhHHHHHHHHHHHHHHHHHHHhhhcccc-------------CCCCC-CCCC-----CChhhHHHHHHHHHHhh
Q 040051 219 ASISTRKTSVLNWIASAINTVVILFVIIVGFAHAD-------------ASNLK-PFLP-----FGSEGIFKAAAVVYFAY 279 (590)
Q Consensus 219 ~~~g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~-------------~~~~~-~~~~-----~g~~~~~~~~~~~~~~~ 279 (590)
..-|+|..-+.-.+=+.+++..++.+++.+....+ ..+.. .+.. +.++.++.+-....-.+
T Consensus 173 ~~GGlkaVi~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~ 252 (585)
T KOG2349|consen 173 ALGGLKAVIWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSY 252 (585)
T ss_pred HhcCeeEEEEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHH
Confidence 45677777776666667777777666666554311 11111 1111 12233444444444445
Q ss_pred cchhhh-hhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHH-HhhcccCCCC---------CCCcHHHHHHHHhCh--h
Q 040051 280 GGFDNI-ATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALS-LCVMQPYTDI---------DPNAAYSVAFQRVGM--K 346 (590)
Q Consensus 280 ~G~e~~-~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~--~ 346 (590)
.|.+.. .+----.|+ .|+..++++.......+...+.... +....-+.+. .++.-.+.......+ +
T Consensus 253 ~~vnQ~~VQR~lsl~s-lk~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~Cdpl~~g~v~~~D~~~P~fV~d~~~~~p 331 (585)
T KOG2349|consen 253 YGVNQLIVQRYLSLPS-LKHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTDCDPLCGGLVGCPDQLLPLFVMDLMGHLP 331 (585)
T ss_pred HhhhHHHHhHHhcccc-HHHhhhhhhhhhhHHHHHHHhhcccceeEeeecccCCcccccccCCccccccHHHHHhcCCCC
Confidence 555433 222222333 4555666666665555554443332 1111111111 123323333332222 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Q 040051 347 WAKYLVALGALKGMTTVLLVGALGNARYTTH 377 (590)
Q Consensus 347 ~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~ 377 (590)
.+.-++..++..+.+++.-+.+.+.|-+.+.
T Consensus 332 Gl~GLfia~vfsA~LSsLSS~~NS~s~v~~e 362 (585)
T KOG2349|consen 332 GLRGLFIAVVFSAALSSLSSIFNSLSTVFLE 362 (585)
T ss_pred CccchhHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 3344555666666777777777777777654
No 115
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=87.22 E-value=48 Score=35.89 Aligned_cols=64 Identities=13% Similarity=0.196 Sum_probs=35.5
Q ss_pred HHhhccCCCCCCcccccccc----HHHHHHHHHHHHHHhc-------------CChhhHHHH--HHHHHHHHHHHHHHhh
Q 040051 501 ISVLLPQQRTPKTWGVPLVP----WLPSLSIATNIFLMGS-------------LGYQAFVRF--GICTLVMLVYYFFFGL 561 (590)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~p----~~~~~~~~~~~~~~~~-------------~~~~~~~~~--~~~~~i~~~~y~~~~~ 561 (590)
+..+.++++.+|+||.|..+ +...++++.+++.+.. ++|....+. +++.+++.++|..++|
T Consensus 383 i~lr~k~p~~~rpf~~pg~~~~~~i~~~~~~~~~~~~~v~~~~Pp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~y~~~~~ 462 (507)
T TIGR00910 383 FVLILKHPDLKRTFNIPGGIGGKLIIAGIGFLLSIFAFFISFLPPANIAGDETDMYQEILLISFLVTAALPFIIYALHDK 462 (507)
T ss_pred HHHHHhcCCCCCCeEecCCccchhhHHHHHHHHHHHHHheeeeCCCccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34456677888999998654 4555555555554321 233222221 2344566677766666
Q ss_pred ccc
Q 040051 562 HAT 564 (590)
Q Consensus 562 ~~~ 564 (590)
|++
T Consensus 463 ~~~ 465 (507)
T TIGR00910 463 KGH 465 (507)
T ss_pred ccc
Confidence 643
No 116
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=84.29 E-value=51 Score=33.56 Aligned_cols=103 Identities=20% Similarity=-0.004 Sum_probs=66.3
Q ss_pred CHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHH
Q 040051 77 TWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAF 155 (590)
Q Consensus 77 ~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~ 155 (590)
+.+-++..=+.++.|.|-...|-..+. =|+. +++..++++++.-.+-=..+-+.|.--+.-+.-+.+++..||..+.
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~--~GwlPa~lWI~~G~if~GaVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~ 130 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQ--FGWLPALLWIVFGCIFAGAVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKK 130 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHH--hcchHHHHHHHHccHHHHHHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHH
Confidence 345566667778888888877766532 5765 5554555555555544344444443223335677788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040051 156 ITAGNILLESIVGGAAVARAWTSYFT 181 (590)
Q Consensus 156 ~~g~~~~l~~~~~~a~~~~~~~~~~~ 181 (590)
+..+..++.-++..+......++.+.
T Consensus 131 lf~~f~~~~lilV~avF~~v~a~~~~ 156 (376)
T PF02554_consen 131 LFLIFIFFLLILVIAVFADVVANTFV 156 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 98888877777776666555554443
No 117
>PRK15015 carbon starvation protein A; Provisional
Probab=84.22 E-value=71 Score=35.14 Aligned_cols=95 Identities=20% Similarity=0.101 Sum_probs=53.9
Q ss_pred HHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccc-cchhhhHHHhchhhHHHHH
Q 040051 81 LTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAG-GSFAYLRIELGDFAAFITA 158 (590)
Q Consensus 81 ~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~G-g~y~~~~~~~g~~~g~~~g 158 (590)
++.-=+.++.|.|..+.|-..+ + -|.. ..+..+++.++.-.+ .=|.-+-...-+.| +.-..+++..|+..+.+..
T Consensus 88 LfGHHFasIAGAGPivGPvlAa-~-~GwlP~~LWIl~G~vf~GaV-hD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lfl 164 (701)
T PRK15015 88 LFGHHFAAIAGAGPLVGPVLAA-Q-MGYLPGMIWLLAGVVLAGAV-QDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIAL 164 (701)
T ss_pred hhHHHHHHHhccCccHHHHHHH-H-HcchHHHHHHHHcceeechh-hhhhheeeeecCCCccHHHHHHHHhhHHHHHHHH
Confidence 4445566778888888877665 3 5654 444233444433332 22223322333333 5667788899999888877
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040051 159 GNILLESIVGGAAVARAWTS 178 (590)
Q Consensus 159 ~~~~l~~~~~~a~~~~~~~~ 178 (590)
...++..++..+..+...++
T Consensus 165 i~i~~iliiviAvfalvvv~ 184 (701)
T PRK15015 165 VACFMIMVIILAVLAMIVVK 184 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666555555554444443
No 118
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=83.84 E-value=53 Score=33.40 Aligned_cols=36 Identities=17% Similarity=0.207 Sum_probs=24.6
Q ss_pred hhhhhhhccCCCCc----hhhHHHHHHHHHHHHHHHHHHH
Q 040051 285 IATMAEETKNPSRD----IPIGLLGSMSMITIIYCLMALS 320 (590)
Q Consensus 285 ~~~~a~E~k~p~r~----~p~a~~~~~~~~~~~y~l~~~~ 320 (590)
....++++.++++| -|+|+..+++.+.-.-++...+
T Consensus 28 L~~~~~~ig~~~~D~~~~T~~al~~tll~alp~pl~~~~~ 67 (340)
T PF12794_consen 28 LERIAKRIGKVRQDSFSHTPRALLLTLLLALPLPLLLLAI 67 (340)
T ss_pred HHHHHHHcCCccCCCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666555 8999999988887666555444
No 119
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=83.14 E-value=10 Score=39.20 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=30.6
Q ss_pred HHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHh
Q 040051 360 MTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFS 416 (590)
Q Consensus 360 ~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~ 416 (590)
.+++.....++.|+.+..+--|+.=| |.=.| ..+++++++.+++.+..
T Consensus 68 ~i~s~f~i~YG~sKf~~G~~sDr~np--------r~fm~-~gLilsai~nil~Gfs~ 115 (448)
T COG2271 68 ILGSAFSITYGVSKFVMGVLSDRSNP--------RYFMA-FGLILSAIVNILFGFSP 115 (448)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCC--------ceeeh-HHHHHHHHHHHHHhhhh
Confidence 44566677888999999888886544 43222 24666666666555443
No 120
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function.
Probab=82.93 E-value=66 Score=33.79 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=49.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
+|-+|=+.+.+++++.+.+++.... . +++|. +..+..+..... ++.+..-.+..- .. -
T Consensus 14 er~lPD~fvFAilLT~iv~~~a~~~-t---------~~~p~-~~v~~Wg~GfW~-LL~F~MQM~Lil-vt---------G 71 (453)
T PF02667_consen 14 ERYLPDPFVFAILLTFIVFVLALLL-T---------GQSPL-EMVEAWGDGFWS-LLAFAMQMALIL-VT---------G 71 (453)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHh-c---------CCCHH-HHHHHHhccHHH-HHHHHHHHHHHH-HH---------H
Confidence 5778888888888887777543332 1 22333 334433433221 222222111110 11 1
Q ss_pred HHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 040051 376 THIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF 415 (590)
Q Consensus 376 ~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~ 415 (590)
|++|+....-|.+.|+-+.-++|..|+.+..+++.+.+++
T Consensus 72 ~~lA~sp~v~r~l~~lA~~p~t~~~Ai~lv~~vs~i~s~i 111 (453)
T PF02667_consen 72 YALASSPPVKRLLDRLASLPKTPRQAIVLVALVSMIASWI 111 (453)
T ss_pred HHHhCChHHHHHHHHHHhcCCCCcceeeHHHHHHHHHHHH
Confidence 2333333223444454445578889998888887665544
No 121
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=76.81 E-value=25 Score=30.38 Aligned_cols=20 Identities=15% Similarity=0.124 Sum_probs=11.2
Q ss_pred ChhhHHHHHHHHHHHHHHHH
Q 040051 538 GYQAFVRFGICTLVMLVYYF 557 (590)
Q Consensus 538 ~~~~~~~~~~~~~i~~~~y~ 557 (590)
+...++.....+..|+++-.
T Consensus 85 ~~~~~i~g~~~~~~G~~~i~ 104 (136)
T PF08507_consen 85 SILSIIIGLLLFLVGVIYII 104 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55455565566666665443
No 122
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=76.57 E-value=4.5 Score=29.53 Aligned_cols=30 Identities=10% Similarity=0.159 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccccC
Q 040051 542 FVRFGICTLVMLVYYFFFGLHATYDMAHQQ 571 (590)
Q Consensus 542 ~~~~~~~~~i~~~~y~~~~~~~~~~~~~~~ 571 (590)
..+.+.+.++|++.|-.|.|++..+.+...
T Consensus 6 iLi~ICVaii~lIlY~iYnr~~~~q~~~~~ 35 (68)
T PF05961_consen 6 ILIIICVAIIGLILYGIYNRKKTTQNTNPS 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCc
Confidence 345567778899999888888665544443
No 123
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=72.88 E-value=3.9 Score=29.46 Aligned_cols=10 Identities=30% Similarity=0.132 Sum_probs=4.1
Q ss_pred CCCCCCCCCc
Q 040051 576 PLKDNDEDTI 585 (590)
Q Consensus 576 ~~~~~~~~~~ 585 (590)
..+.+|+.++
T Consensus 45 ~l~l~Dd~q~ 54 (60)
T COG4736 45 ILPLNDDAQD 54 (60)
T ss_pred CCCCCcchhh
Confidence 3444444433
No 124
>PTZ00206 amino acid transporter; Provisional
Probab=72.67 E-value=48 Score=35.43 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=43.7
Q ss_pred cHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhh
Q 040051 334 AAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFA 389 (590)
Q Consensus 334 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~ 389 (590)
..+.++.+...+++..+++.+..++..++++.+++......+...-++...|+++.
T Consensus 121 ~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~ 176 (467)
T PTZ00206 121 RTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLK 176 (467)
T ss_pred CCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhh
Confidence 35677777766789999999999999999999999988888877665444455554
No 125
>PHA03049 IMV membrane protein; Provisional
Probab=72.48 E-value=5.6 Score=28.85 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccccc
Q 040051 542 FVRFGICTLVMLVYYFFFGLHATYDMAH 569 (590)
Q Consensus 542 ~~~~~~~~~i~~~~y~~~~~~~~~~~~~ 569 (590)
..+.+.+.++|++.|-+|.|+...+...
T Consensus 6 ~l~iICVaIi~lIvYgiYnkk~~~q~~~ 33 (68)
T PHA03049 6 ILVIICVVIIGLIVYGIYNKKTTTSQNP 33 (68)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCC
Confidence 3455677788999998888775554443
No 126
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=67.80 E-value=1.9e+02 Score=31.60 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=21.4
Q ss_pred CCCCccccccccHHHHHHHHHHHHHHhc
Q 040051 509 RTPKTWGVPLVPWLPSLSIATNIFLMGS 536 (590)
Q Consensus 509 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 536 (590)
.++.+|+.+..|+.++++.+++......
T Consensus 431 ~~~~~~~s~~~~~gs~~~~~~~~l~~~~ 458 (554)
T KOG1286|consen 431 LDELPYKSPTGPYGSYYGLLVNILILLA 458 (554)
T ss_pred cccccccCCCCCchhHHHHHHHHHHHHH
Confidence 4556788888999999999988775443
No 127
>PHA02902 putative IMV membrane protein; Provisional
Probab=65.38 E-value=19 Score=25.95 Aligned_cols=26 Identities=12% Similarity=0.034 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhcccccccc
Q 040051 544 RFGICTLVMLVYYFFFGLHATYDMAH 569 (590)
Q Consensus 544 ~~~~~~~i~~~~y~~~~~~~~~~~~~ 569 (590)
..+.+++.+.++|-.|+|.+--..++
T Consensus 9 ~~v~v~Ivclliya~YrR~kci~sP~ 34 (70)
T PHA02902 9 LAVIVIIFCLLIYAAYKRYKCIPSPD 34 (70)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 34556677788888888775555333
No 128
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=63.70 E-value=12 Score=31.52 Aligned_cols=20 Identities=20% Similarity=0.424 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 040051 544 RFGICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 544 ~~~~~~~i~~~~y~~~~~~~ 563 (590)
+++++.+|.+++|++.++|+
T Consensus 74 ~aGvIg~Illi~y~irR~~K 93 (122)
T PF01102_consen 74 MAGVIGIILLISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 44445555566665555443
No 129
>PHA02681 ORF089 virion membrane protein; Provisional
Probab=56.12 E-value=34 Score=26.13 Aligned_cols=22 Identities=9% Similarity=0.253 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040051 541 AFVRFGICTLVMLVYYFFFGLH 562 (590)
Q Consensus 541 ~~~~~~~~~~i~~~~y~~~~~~ 562 (590)
+.+..+.+.+.+.++|-.|+|.
T Consensus 6 a~~~~V~V~IVclliya~YRR~ 27 (92)
T PHA02681 6 ALLTVIVISIVCYIVIMMYRRS 27 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4445566667777777777776
No 130
>PF07214 DUF1418: Protein of unknown function (DUF1418); InterPro: IPR010815 This family consists of several hypothetical Enterobacterial proteins of around 100 residues in length. Members of this family are often described as YbjC. In Escherichia coli the ybjC gene is located downstream of nfsA (which encodes the major oxygen-insensitive nitroreductase). It is thought that nfsA and ybjC form an operon an its promoter is a class I SoxS-dependent promoter []. The function of this family is unknown.
Probab=55.91 E-value=98 Score=24.71 Aligned_cols=22 Identities=14% Similarity=0.027 Sum_probs=9.2
Q ss_pred HHHHHHHHHhhccCCCCCCccc
Q 040051 494 WFLGTLGISVLLPQQRTPKTWG 515 (590)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~ 515 (590)
.+++...+...+..-..|.++.
T Consensus 19 ~~LLv~a~Lsin~~l~LP~~l~ 40 (96)
T PF07214_consen 19 MILLVLAYLSINDYLSLPAPLS 40 (96)
T ss_pred HHHHHHHHHHHcccccCccccc
Confidence 3333444444444434444443
No 131
>PHA03048 IMV membrane protein; Provisional
Probab=54.88 E-value=72 Score=24.91 Aligned_cols=22 Identities=23% Similarity=0.421 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 040051 543 VRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
.+.++++.+|++.|--|+|+=+
T Consensus 51 FIlgivl~lG~~ifsmy~r~C~ 72 (93)
T PHA03048 51 FVLGIVMTIGMLIYSMWGRYCT 72 (93)
T ss_pred HHHHHHHHHHHHHHHHHhcccC
Confidence 4567888999999888887744
No 132
>COG3247 HdeD Uncharacterized conserved protein [Function unknown]
Probab=54.85 E-value=1.7e+02 Score=26.74 Aligned_cols=39 Identities=13% Similarity=0.089 Sum_probs=24.7
Q ss_pred CCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q 040051 395 TGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVF 433 (590)
Q Consensus 395 ~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 433 (590)
.+.|.....+.+++.+++..+.-++...+.......+..
T Consensus 15 l~~~w~~~l~~Gv~lii~Gl~~l~~P~~s~~~l~~~vG~ 53 (185)
T COG3247 15 LKKPWWWVLLLGVLLIILGLLALFNPAISTVALVYVVGI 53 (185)
T ss_pred hcCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 456777788888887777766555555555555444443
No 133
>TIGR00366 conserved hypothetical integral membrane protein.
Probab=52.12 E-value=3.1e+02 Score=28.88 Aligned_cols=98 Identities=12% Similarity=0.195 Sum_probs=49.6
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
+|-+|-+.+.+++++.++++..... ..++|. +..+..|..... ++.+..=.... -.. =
T Consensus 11 ~r~lPd~~vFa~~lt~iv~~~al~~----------~~~~p~-~~v~~wg~GfW~-LL~F~MQM~li-lvt---------G 68 (438)
T TIGR00366 11 SKWLPDPLIFALLLTLVTFVLVIVL----------TKQTPV-SLVDMWGNGFWN-LLGFGMQMALI-LVT---------G 68 (438)
T ss_pred HHHCCcHHHHHHHHHHHHHHHHHHh----------cCCCHH-HHHHHHHhhHHH-HHHHHHHHHHH-HHH---------H
Confidence 5778888888887777776544432 122332 344444433221 22222111111 001 1
Q ss_pred HHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHH
Q 040051 376 THIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALF 415 (590)
Q Consensus 376 ~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~ 415 (590)
|.+|.....-|.+.|+-+.-++|..|+++..+++.+.+++
T Consensus 69 ~~lA~sp~v~r~l~~la~~p~t~~~ai~~v~~vs~~~s~i 108 (438)
T TIGR00366 69 YALAYSPIVYKLLKTIASLPKTPKQAVALVTFIGSIACWI 108 (438)
T ss_pred HHHhcCHHHHHHHHHHHhCCCCCCceeehHHHHHHHHHHH
Confidence 2233333223444555445678999998888888765544
No 134
>PRK11281 hypothetical protein; Provisional
Probab=50.68 E-value=5.2e+02 Score=31.07 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=16.5
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHH
Q 040051 294 NPSRDIPIGLLGSMSMITIIYCLM 317 (590)
Q Consensus 294 ~p~r~~p~a~~~~~~~~~~~y~l~ 317 (590)
|.....|+|+.++++.+.-..+++
T Consensus 537 D~~~~T~~al~~t~l~alp~~l~~ 560 (1113)
T PRK11281 537 DSQLHTPKAILITLLLALPVTLIF 560 (1113)
T ss_pred CcccccHHHHHHHHHHHHHHHHHH
Confidence 334567899999888776555543
No 135
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=50.52 E-value=3.6e+02 Score=29.20 Aligned_cols=101 Identities=20% Similarity=0.056 Sum_probs=59.7
Q ss_pred HHHHHHHHhhhhhcchhhhcchHhHhhccC-hHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHH
Q 040051 78 WWDLTWFGFGAVIGAGIFVLTGQEAHKHAG-PAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFI 156 (590)
Q Consensus 78 ~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G-~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~ 156 (590)
.+-++..=+.++.|.|..+.|-..+. -| +.+.+..+++++++-.+-=.+.-+.|.--+.-+.-+.+++.+|+..|.+
T Consensus 54 k~vlfGhHFaaIAGAGPivGPvlAAq--~G~Lp~~LWIl~G~VfaGaVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 54 KWVLFGHHFASIAGAGPIVGPALAAQ--YGWLPAFLWILLGCVFAGAVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred chhhhHHHHHHHhccCcchhHHHHHH--hcCcHHHHHHHHhhhhhhhhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 34455556677889999888776643 45 5555545666666555443333333332223346677788888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040051 157 TAGNILLESIVGGAAVARAWTSYF 180 (590)
Q Consensus 157 ~g~~~~l~~~~~~a~~~~~~~~~~ 180 (590)
.....++--++..+..+...+..+
T Consensus 132 ~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 132 FLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 776655555555555444444433
No 136
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=50.21 E-value=34 Score=33.51 Aligned_cols=25 Identities=12% Similarity=0.166 Sum_probs=13.8
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhH
Q 040051 394 KTGTPINANLLIVLASALIALFSGL 418 (590)
Q Consensus 394 ~~~~P~~ai~~~~~~~~~~~~~~~~ 418 (590)
|.+.-+.|.++..+.+..+.-.+-+
T Consensus 27 kwk~~Vpa~v~iy~gamff~t~Glf 51 (384)
T COG5505 27 KWKSAVPAAVIIYAGAMFFTTVGLF 51 (384)
T ss_pred CccchhhHHHHHHHHHHHHhhcccc
Confidence 3344555666666666555555544
No 137
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=46.82 E-value=3.7e+02 Score=28.30 Aligned_cols=95 Identities=12% Similarity=0.129 Sum_probs=65.6
Q ss_pred hhhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhh
Q 040051 142 FAYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASI 221 (590)
Q Consensus 142 y~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (590)
-..+++.+|+....+.+....++...++-.-..++++|++..++. -. -..+.+++.++...+..+
T Consensus 264 ~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~k--is-------------Y~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 264 SQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPK--IS-------------YKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cC-------------hHHHHHHHHHHHHHHHHh
Confidence 345567899999999999999999988888899999999998862 11 225666667777788888
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhcc
Q 040051 222 STRKTSVLNWIASAINTVVILFVIIVGFAH 251 (590)
Q Consensus 222 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~ 251 (590)
|....-++..-...+.-=..+++++..+.+
T Consensus 329 Gl~~Ii~~s~PiL~~iYP~~IvLIll~l~~ 358 (427)
T PF05525_consen 329 GLDQIIKISVPILMFIYPVAIVLILLNLFD 358 (427)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 887766655443333222333444444443
No 138
>PF03595 SLAC1: Voltage-dependent anion channel; InterPro: IPR004695 Two members of the Tellurite-Resistance/Dicarboxylate Transporter (TDT) family have been functionally characterised. One is the TehA protein of Escherichia coli which has been implicated in resistance to tellurite; the other is the Mae1 protein of Schizosaccharomyces pombe which functions in the uptake of malate and other dicarboxylates by a proton symport mechanism. These proteins exhibit 10 putative transmembrane a-helical spanners (TMSs).; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3M76_A 3M7C_A 3M7E_A 3M74_A 3M7B_A 3M71_A 3M72_A 3M77_A 3M7L_A 3M75_A ....
Probab=46.48 E-value=2.9e+02 Score=27.71 Aligned_cols=23 Identities=39% Similarity=0.678 Sum_probs=10.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 040051 417 GLDILSALLSLSTLFVFMMMAVA 439 (590)
Q Consensus 417 ~~~~l~~~~~~~~~~~~~~~~~~ 439 (590)
..+.+..+......+.|....+.
T Consensus 30 ~~~~~~~~~~~~~~~l~~~~~~~ 52 (330)
T PF03595_consen 30 GLAILSEVLFILALILFLVLLVL 52 (330)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444445555554333
No 139
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=46.01 E-value=2.1e+02 Score=30.52 Aligned_cols=16 Identities=6% Similarity=0.187 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHhhc
Q 040051 547 ICTLVMLVYYFFFGLH 562 (590)
Q Consensus 547 ~~~~i~~~~y~~~~~~ 562 (590)
+.+.+.++.|..|+.+
T Consensus 448 ~~~~~~~~~~~~~~~~ 463 (478)
T TIGR00913 448 LSLPIFIALYIGHKVY 463 (478)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3334444455444443
No 140
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=45.90 E-value=4.1e+02 Score=28.54 Aligned_cols=98 Identities=11% Similarity=0.047 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhchhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhcCCC
Q 040051 115 VASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGDFAAFITAGNILLESIV------GGAAVARAWTSYFTTLLNREP 188 (590)
Q Consensus 115 ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~~~g~~~g~~~~l~~~~------~~a~~~~~~~~~~~~~~~~~~ 188 (590)
.+..+.......+|+..+.++.+..-......+......++++-.....+.+. .....+...++.+++.= .
T Consensus 301 piI~l~F~i~GivYG~~sG~iks~~Dv~~~M~~~m~~m~~yiVL~F~aaQFia~F~~Snlg~i~Av~GA~~L~~~~-~-- 377 (502)
T PF03806_consen 301 PIIFLFFLIPGIVYGIASGTIKSDKDVVKMMSKGMKSMAPYIVLAFFAAQFIAYFNWSNLGTILAVKGAEFLKSLG-L-- 377 (502)
T ss_pred HHHHHHHHHHHHHHhhhhceecCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhcC-C--
Confidence 34456677789999999999998888888888888887777665433322222 12333444555555421 0
Q ss_pred CccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 189 NSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
+ .....+.++++..++|++=...++|-
T Consensus 378 ---------~-----~~~l~i~fill~a~iNLfi~S~SaKW 404 (502)
T PF03806_consen 378 ---------P-----GIPLIIGFILLTAFINLFIGSASAKW 404 (502)
T ss_pred ---------C-----cHHHHHHHHHHHHHHHHhhhcchhhH
Confidence 1 22566777888899998755544443
No 141
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=45.44 E-value=3.6e+02 Score=27.68 Aligned_cols=21 Identities=5% Similarity=0.108 Sum_probs=15.6
Q ss_pred cccHHHHHHHHHHHHHHhcCC
Q 040051 518 LVPWLPSLSIATNIFLMGSLG 538 (590)
Q Consensus 518 ~~p~~~~~~~~~~~~~~~~~~ 538 (590)
..+..|+++++....++...-
T Consensus 288 ~~~L~PV~a~llg~l~LgE~l 308 (358)
T PLN00411 288 FKPLSILIAVVMGAIFLNDSL 308 (358)
T ss_pred HHhHHHHHHHHHHHHHhCCCC
Confidence 568889888888877665543
No 142
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=44.59 E-value=4.1e+02 Score=28.11 Aligned_cols=92 Identities=11% Similarity=0.222 Sum_probs=63.8
Q ss_pred hhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhc
Q 040051 143 AYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIS 222 (590)
Q Consensus 143 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 222 (590)
..+.+.+|+....+.+...+++...++.....+++++++..++.. -..+.+++.++...+..+|
T Consensus 269 ~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~is----------------Y~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 269 AYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVPLS----------------YRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc----------------HHHHHHHHHHHHHHHHHhH
Confidence 455789999999999999999999999999999999999876411 2256666677777777778
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 223 TRKTSVLNWIASAINTVVILFVIIVGFA 250 (590)
Q Consensus 223 ~k~~~~~~~~~~~~~i~~~~~~~i~~~~ 250 (590)
.+..-++..-.....-=..+++++..+.
T Consensus 333 ~~~II~~s~PiL~~iYP~~IvLill~l~ 360 (439)
T PRK15433 333 LSQLIQISVPVLTAIYPPCIALVVLSFT 360 (439)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 7766665544333322233333444444
No 143
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=43.29 E-value=4.3e+02 Score=27.98 Aligned_cols=86 Identities=19% Similarity=0.169 Sum_probs=52.5
Q ss_pred hChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHH-HHHHHHHHHHhhHHHH
Q 040051 343 VGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLI-VLASALIALFSGLDIL 421 (590)
Q Consensus 343 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~-~~~~~~~~~~~~~~~l 421 (590)
.-++++..+++..++++.++.+..++.-.++-+.++-+.. + ....+.+-.++. ...-+++.++.++..+
T Consensus 133 ~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~---------~-~~~~s~~~~i~~~~~~~lll~~Ir~Lk~L 202 (449)
T KOG1304|consen 133 KYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH---------S-PGVLSVRLYILIQLPPLLLLNLIRNLKIL 202 (449)
T ss_pred hhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc---------C-CCCccHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 3447888999999999999999888888888888877611 1 223333333322 3333344445666666
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040051 422 SALLSLSTLFVFMMMAV 438 (590)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ 438 (590)
...+.++..+...-..+
T Consensus 203 sp~Sl~Anv~~~~g~~i 219 (449)
T KOG1304|consen 203 SPFSLFANVFILVGLAI 219 (449)
T ss_pred hHHHHHHHHHHHHHHHH
Confidence 66655555444433333
No 144
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=42.66 E-value=3.9e+02 Score=27.37 Aligned_cols=56 Identities=11% Similarity=-0.029 Sum_probs=33.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 040051 394 KTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVREI 450 (590)
Q Consensus 394 ~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 450 (590)
|...-..+.+...+++...- -..+..+.........+...+..+-++..|+|+++.
T Consensus 308 ~~~~~~~~~~~pl~~a~~~p-~~~~~~l~~~G~~~~~~~~~~p~l~~~~~r~~~~~~ 363 (381)
T TIGR00837 308 RFKTGLLTFLPPLVFALFYP-EGFLYAIGYAGLAATIWAVIIPALLAWKARKKFPNA 363 (381)
T ss_pred CchhhhhhHHhHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 44554555555555553332 222334444446677777888888888888886653
No 145
>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]
Probab=41.32 E-value=3.7e+02 Score=26.71 Aligned_cols=58 Identities=14% Similarity=0.140 Sum_probs=30.1
Q ss_pred HHHhcCCCchhhhccCCC----CC-CchHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHH
Q 040051 377 HIARAHMIPPWFALVHPK----TG-TPINANLLIVLASALIALF--SGLDILSALLSLSTLFVFM 434 (590)
Q Consensus 377 ~~ard~~lP~~f~~~~~~----~~-~P~~ai~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~ 434 (590)
.+-.|+.+-+...|+.+| .. .|..++.+..+++.+-..+ ...|.+........++.|.
T Consensus 72 N~~~DrDID~~M~RT~~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv 136 (304)
T COG0109 72 NMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYV 136 (304)
T ss_pred hhhhhhhHHHhhhhccCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555555555554422 22 5778888877776543332 2345555555555544443
No 146
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=38.59 E-value=10 Score=36.33 Aligned_cols=48 Identities=6% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHhhhcCCCC---CcchHHHHHHHHHHHHHHHHHhhccC
Q 040051 460 VIFLLIIIASSAGISAYWGLKP---NGWVGYVITVPLWFLGTLGISVLLPQ 507 (590)
Q Consensus 460 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (590)
+.+...++..++++..|..+.. ......+-++++.++++++++.|+|+
T Consensus 25 l~~~~llll~ail~w~~iimsd~t~~a~~vl~sfAvvliiIIiIImlF~Rr 75 (381)
T PF05297_consen 25 LLFGLLLLLVAILVWFFIIMSDLTQGALTVLYSFAVVLIIIIIIIMLFKRR 75 (381)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333344444455444444432 22233444455555555555556554
No 147
>PF01578 Cytochrom_C_asm: Cytochrome C assembly protein; InterPro: IPR002541 This entry consists of various proteins involved in cytochrome c assembly from mitochondria and bacteria; CycK from Rhizobium leguminosarum [], CcmC from Escherichia coli and Paracoccus denitrificans [, ] and orf240 from Triticum aestivum (Wheat) mitochondria []. The members of this family are probably integral membrane proteins with six predicted transmembrane helices that may comprise the membrane component of an ABC (ATP binding cassette) transporter complex. This transporter may be necessary for transport of some component needed for cytochrome c assembly. One member, R. leguminosarum CycK, contains a putative haem-binding motif []. Wheat orf240 also contains a putative haem-binding motif and is a proposed ABC transporter with c-type haem as its proposed substrate []. However it seems unlikely that all members of this family transport haem or c-type apocytochromes because P. denitrificans CcmC transports neither [].; GO: 0006461 protein complex assembly, 0008535 respiratory chain complex IV assembly, 0016020 membrane
Probab=38.50 E-value=1.9e+02 Score=26.91 Aligned_cols=19 Identities=11% Similarity=0.331 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040051 424 LLSLSTLFVFMMMAVALLV 442 (590)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~ 442 (590)
......+.++.+..+.++.
T Consensus 4 ~~~~l~~~~~~~~~~~~~~ 22 (214)
T PF01578_consen 4 LYESLLFLAWLLALIYLFL 22 (214)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444455566666655554
No 148
>PHA02898 virion envelope protein; Provisional
Probab=35.70 E-value=1.6e+02 Score=23.09 Aligned_cols=22 Identities=5% Similarity=0.276 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccc
Q 040051 543 VRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
.+.++++.+|++.|-.|+|+=+
T Consensus 52 FIlgivl~lG~~ifs~y~r~C~ 73 (92)
T PHA02898 52 FILAIILILGIIFFKGYNMFCG 73 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhcC
Confidence 4567888899999888887744
No 149
>COG4025 Predicted membrane protein [Function unknown]
Probab=35.53 E-value=3.9e+02 Score=25.31 Aligned_cols=15 Identities=20% Similarity=0.273 Sum_probs=12.1
Q ss_pred hhHHHHHHHhcCCCc
Q 040051 371 NARYTTHIARAHMIP 385 (590)
Q Consensus 371 ~sR~l~~~ard~~lP 385 (590)
.-|-...++||+.+|
T Consensus 56 ~ve~v~e~~re~~i~ 70 (284)
T COG4025 56 KVEKVMEKVREFQIP 70 (284)
T ss_pred HHHHHHHHHhcCCCc
Confidence 456788899999987
No 150
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=35.42 E-value=4.9e+02 Score=26.39 Aligned_cols=13 Identities=15% Similarity=0.138 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHH
Q 040051 546 GICTLVMLVYYFF 558 (590)
Q Consensus 546 ~~~~~i~~~~y~~ 558 (590)
...+++|++.|..
T Consensus 293 f~lIiiG~vvy~~ 305 (334)
T PF06027_consen 293 FALIIIGFVVYNL 305 (334)
T ss_pred HHHHHHHhheEEc
Confidence 3445677777644
No 151
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=33.23 E-value=4.6e+02 Score=25.46 Aligned_cols=97 Identities=19% Similarity=0.133 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHHHHHHhhH-----HHHH
Q 040051 348 AKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASALIALFSGL-----DILS 422 (590)
Q Consensus 348 ~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~-----~~l~ 422 (590)
...++....++..+.........+.|.+ .|.|.-.+.+.+.+ +.+.|.+.+++..+..++....... +.+.
T Consensus 157 ~~~~~P~~~~i~~~~~~~~~~~l~~~il---~r~~~~~~~~~~~~-~~~lP~~~~~~~i~~~~~~l~~~~~~~~~~~~i~ 232 (290)
T PF09991_consen 157 IKRLFPALLIISALLMSLINYYLARRIL---RRLGIPIPPLPPFR-EWRLPRWLIWLLIVALALSLVGGGFGGSWLQIIG 232 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHcCCCCCCCCchH-HHhCcHHHHHHHHHHHHHHHHhcccchHHHHHHH
Confidence 3334444444444444444444445544 34443323333444 5678988887765544333332211 2233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcc
Q 040051 423 ALLSLSTLFVFMMMAVALLVRRYYVR 448 (590)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~r~~~~ 448 (590)
.-........|.+..++++....+++
T Consensus 233 ~Nl~~v~~~l~~~qGla~~~~~~~~~ 258 (290)
T PF09991_consen 233 LNLLIVLSFLFFIQGLAVIHFFLKRR 258 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22333345556777777776554444
No 152
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=32.47 E-value=76 Score=28.29 Aligned_cols=15 Identities=7% Similarity=0.193 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHH
Q 040051 543 VRFGICTLVMLVYYF 557 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~ 557 (590)
+++++...+.++|..
T Consensus 99 ~Vl~g~s~l~i~yfv 113 (163)
T PF06679_consen 99 YVLVGLSALAILYFV 113 (163)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 153
>PRK00968 tetrahydromethanopterin S-methyltransferase subunit D; Provisional
Probab=31.95 E-value=61 Score=29.91 Aligned_cols=32 Identities=16% Similarity=0.225 Sum_probs=25.7
Q ss_pred hhhccCCC-CchhhHHHHHHHHHHHHHHHHHHH
Q 040051 289 AEETKNPS-RDIPIGLLGSMSMITIIYCLMALS 320 (590)
Q Consensus 289 a~E~k~p~-r~~p~a~~~~~~~~~~~y~l~~~~ 320 (590)
-|-.+||| |+.||+++.+.+.+.++-+...+.
T Consensus 204 IEGfHDPKFKr~p~~vias~vaS~~~gii~v~~ 236 (240)
T PRK00968 204 IEGFHDPKFKRWPRAVIASFVASLVCGIVAVLM 236 (240)
T ss_pred eecCCCcccccchHHHHHHHHHHHHHHHHHHHH
Confidence 46788997 899999999999888777665544
No 154
>PF05767 Pox_A14: Poxvirus virion envelope protein A14; InterPro: IPR008785 This family consists of several Poxvirus virion envelope protein A14-like sequences. A14 is a component of the virion membrane and has been found to be an H1 phosphatase substrate in vivo and in vitro. A14 is hyperphosphorylated on serine residues in the absence of H1 expression [].; GO: 0019031 viral envelope
Probab=31.90 E-value=2.5e+02 Score=22.19 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 040051 543 VRFGICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~~~~~~~ 563 (590)
.++++++.+|.++|-.|+|+=
T Consensus 52 FI~giil~lG~~i~s~ygr~C 72 (92)
T PF05767_consen 52 FILGIILTLGIVIFSMYGRYC 72 (92)
T ss_pred HHHHHHHHHHHHHHHHHhhhc
Confidence 466788899999998888774
No 155
>PF14283 DUF4366: Domain of unknown function (DUF4366)
Probab=31.30 E-value=26 Score=32.99 Aligned_cols=9 Identities=22% Similarity=0.080 Sum_probs=3.4
Q ss_pred HHHHHHHHH
Q 040051 548 CTLVMLVYY 556 (590)
Q Consensus 548 ~~~i~~~~y 556 (590)
++++|...|
T Consensus 169 v~l~gGGa~ 177 (218)
T PF14283_consen 169 VALIGGGAY 177 (218)
T ss_pred HHHhhcceE
Confidence 333443333
No 156
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=31.28 E-value=87 Score=29.65 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=18.3
Q ss_pred CCCCCccccccccHHHHHHHHHHHH
Q 040051 508 QRTPKTWGVPLVPWLPSLSIATNIF 532 (590)
Q Consensus 508 ~~~~~~~~~~~~p~~~~~~~~~~~~ 532 (590)
|..++.+|...+||...+++.....
T Consensus 151 pg~~~~~Rs~lmP~H~~~Gl~~f~l 175 (245)
T KOG1619|consen 151 PGSPESYRSRLMPWHVFLGLAIFIL 175 (245)
T ss_pred CCCCccHHhhhhhHHHHHHHHHHHH
Confidence 3445678888899988888766644
No 157
>PF11998 DUF3493: Protein of unknown function (DUF3493); InterPro: IPR021883 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 79 to 331 amino acids in length.
Probab=31.02 E-value=2.2e+02 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.9
Q ss_pred hhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q 040051 285 IATMAEETKNPSRDIPIGLLGSMSMITIIYCLMALSLCV 323 (590)
Q Consensus 285 ~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~~~~~~ 323 (590)
-..+=+|++.|=|.+.+-+..+...+..+..++.+.-..
T Consensus 6 ~~rLraE~~aPfR~lR~f~y~a~~aSa~iG~~i~~~rl~ 44 (75)
T PF11998_consen 6 YARLRAEAQAPFRGLRRFFYGAFGASAGIGLFIFLFRLI 44 (75)
T ss_pred HHHHHHHHHCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678999999999999999999988888877776443
No 158
>PF14256 YwiC: YwiC-like protein
Probab=30.71 E-value=3.4e+02 Score=23.14 Aligned_cols=46 Identities=20% Similarity=0.181 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 040051 402 NLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYV 447 (590)
Q Consensus 402 i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~ 447 (590)
-+...++..++...+..++.--....+.+..|....-.....|.|+
T Consensus 7 AW~Ml~~P~l~G~~~~~~w~~~~L~~aw~~~yl~~~p~~~~~k~r~ 52 (129)
T PF14256_consen 7 AWAMLLVPFLLGMAGGPSWAHLPLLLAWLFGYLAFYPFLLWLKQRR 52 (129)
T ss_pred hHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3555555555555544443333334445556655555444444443
No 159
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=30.11 E-value=3.7e+02 Score=23.43 Aligned_cols=75 Identities=19% Similarity=0.390 Sum_probs=34.8
Q ss_pred CCccchhHHHHHHHHHHHHHhHHhhhcCC----C--C----CcchHH---HHHHHHHHHHHHHHHhhccCCCCCCccccc
Q 040051 451 TPRKNLLMLVIFLLIIIASSAGISAYWGL----K--P----NGWVGY---VITVPLWFLGTLGISVLLPQQRTPKTWGVP 517 (590)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~----~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (590)
++..+...+..-...++|+++++...+.. + + -+|..+ .+..+-|+..... +++|. ..+.+|..
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~~~~~~SlHSwlGl~t~~L~~lQ~~~G~~~-f~~P~---~~~~~r~~ 112 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVGIPNLYSLHSWLGIGTISLFGLQWLFGFVT-FWFPG---ASRNTRAA 112 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccccccHHHHHHHHHHHHHHHHHHHHHHH-HHcCC---CcHHHHHH
Confidence 33444555555555555555555554432 1 1 222222 2222223333322 34443 23445666
Q ss_pred cccHHHHHHHHH
Q 040051 518 LVPWLPSLSIAT 529 (590)
Q Consensus 518 ~~p~~~~~~~~~ 529 (590)
..|+.-..+.+.
T Consensus 113 ~~p~H~~~G~~~ 124 (144)
T cd08766 113 LLPWHVFLGLAI 124 (144)
T ss_pred HHHHHHHHHHHH
Confidence 778766655554
No 160
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=28.66 E-value=6.7e+02 Score=25.92 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=53.3
Q ss_pred hhhHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhc
Q 040051 143 AYLRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASIS 222 (590)
Q Consensus 143 ~~~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g 222 (590)
+.+++.+|+..+.+.+....++...++-....++++++..+.+. .. ...+.+...+....+...|
T Consensus 259 ~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--~~-------------y~~~v~~~~l~s~~ia~~G 323 (378)
T TIGR00796 259 AYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--LS-------------YKTWVIVFTLFSFIVANLG 323 (378)
T ss_pred HHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CC-------------HHHHHHHHHHHHHHHHHhC
Confidence 56778999999999999999998888888888899999987642 11 2244445555555555667
Q ss_pred hhhhhHHHHH
Q 040051 223 TRKTSVLNWI 232 (590)
Q Consensus 223 ~k~~~~~~~~ 232 (590)
....-++...
T Consensus 324 l~~Ii~~~~P 333 (378)
T TIGR00796 324 LTQIISISIP 333 (378)
T ss_pred HHHHHHHHHH
Confidence 7666554433
No 161
>COG5438 Predicted multitransmembrane protein [Function unknown]
Probab=28.21 E-value=6.7e+02 Score=25.72 Aligned_cols=31 Identities=10% Similarity=0.245 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCCCCCC
Q 040051 303 LLGSMSMITIIYCLMALSLCVMQPYTDIDPN 333 (590)
Q Consensus 303 ~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~ 333 (590)
+..+..+.+.+..+.-.++...-+-+++.+.
T Consensus 256 ~~~~~viIg~LGAimDvaisIaSsi~El~e~ 286 (385)
T COG5438 256 LFLAGVIIGSLGAIMDVAISIASSINELHEQ 286 (385)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhc
Confidence 4444445555555555555555555555433
No 162
>COG2456 Uncharacterized conserved protein [Function unknown]
Probab=28.10 E-value=35 Score=27.59 Aligned_cols=18 Identities=28% Similarity=0.456 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 040051 546 GICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 546 ~~~~~i~~~~y~~~~~~~ 563 (590)
..++-++..+|..++-..
T Consensus 76 L~vitI~~ayyLlfrlYl 93 (121)
T COG2456 76 LFVITIGLAYYLLFRLYL 93 (121)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455677788888776553
No 163
>PF05656 DUF805: Protein of unknown function (DUF805); InterPro: IPR008523 This entry is represented by Lactobacillus phage LBR48, DUF805. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0016021 integral to membrane
Probab=28.03 E-value=3.5e+02 Score=22.35 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhhhccC
Q 040051 433 FMMMAVALLVRRYYVRE 449 (590)
Q Consensus 433 ~~~~~~~~~~~r~~~~~ 449 (590)
..+..++...+|.+.-+
T Consensus 58 ~~i~~lal~vRRlhD~G 74 (120)
T PF05656_consen 58 LFIPSLALTVRRLHDIG 74 (120)
T ss_pred HHHHHHHHHhhhhhcCC
Confidence 33344555556655443
No 164
>PF15102 TMEM154: TMEM154 protein family
Probab=27.26 E-value=54 Score=28.44 Aligned_cols=9 Identities=11% Similarity=0.305 Sum_probs=4.1
Q ss_pred HHhhccccc
Q 040051 558 FFGLHATYD 566 (590)
Q Consensus 558 ~~~~~~~~~ 566 (590)
.++||+.++
T Consensus 81 ~~kRkr~K~ 89 (146)
T PF15102_consen 81 YYKRKRTKQ 89 (146)
T ss_pred EEeecccCC
Confidence 344554444
No 165
>PF04211 MtrC: Tetrahydromethanopterin S-methyltransferase, subunit C ; InterPro: IPR005865 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit C in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=27.05 E-value=5.7e+02 Score=24.59 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=13.8
Q ss_pred CCchHHHHHHHHHHHHHHHH
Q 040051 396 GTPINANLLIVLASALIALF 415 (590)
Q Consensus 396 ~~P~~ai~~~~~~~~~~~~~ 415 (590)
-.|..++++..++..++..+
T Consensus 102 ~~PI~~~iiA~IiG~vvG~l 121 (262)
T PF04211_consen 102 AGPIIALIIAAIIGAVVGLL 121 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777666665
No 166
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional
Probab=26.81 E-value=7.9e+02 Score=26.10 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=14.2
Q ss_pred CCCchHHHHHHHHHHHHHHHH
Q 040051 395 TGTPINANLLIVLASALIALF 415 (590)
Q Consensus 395 ~~~P~~ai~~~~~~~~~~~~~ 415 (590)
-+.|+.-+-...+++.++.+.
T Consensus 110 ik~pYlll~~~~llg~llsl~ 130 (455)
T PRK09804 110 IRSPYIILSATYVIGQIMAQF 130 (455)
T ss_pred cCCchhHHHHHHHHHHHHHhc
Confidence 345888877777777666543
No 167
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=26.72 E-value=7.9e+02 Score=26.07 Aligned_cols=45 Identities=20% Similarity=0.420 Sum_probs=24.8
Q ss_pred HHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHH
Q 040051 272 AAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCL 316 (590)
Q Consensus 272 ~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l 316 (590)
....+..+.+....+.-.++-||..|.+..++....++-.+....
T Consensus 204 ~~~~f~G~e~~~~~a~e~k~~k~ip~ai~~~~~~v~~lY~l~~~~ 248 (468)
T TIGR03810 204 TVWVFIGIEGASMLSARAEKRSDVGKATVIGLIGVLAIYVLVSVL 248 (468)
T ss_pred HHHHHHhHhHHhhhHhhccCcccchHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433344444556887778777777766664444443
No 168
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=25.69 E-value=1.2e+02 Score=21.61 Aligned_cols=13 Identities=0% Similarity=0.046 Sum_probs=5.1
Q ss_pred HHHHHHHHHHhhc
Q 040051 550 LVMLVYYFFFGLH 562 (590)
Q Consensus 550 ~i~~~~y~~~~~~ 562 (590)
++|=++-+-|..+
T Consensus 16 IigNia~LK~sAk 28 (55)
T PF11446_consen 16 IIGNIAALKYSAK 28 (55)
T ss_pred HHhHHHHHHHhcc
Confidence 3343333334444
No 169
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=25.65 E-value=1.8e+02 Score=23.69 Aligned_cols=22 Identities=9% Similarity=0.244 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHHHHHhhc
Q 040051 541 AFVRFGICTLVMLVYYFFFGLH 562 (590)
Q Consensus 541 ~~~~~~~~~~i~~~~y~~~~~~ 562 (590)
...+..+|+++++++|++.-++
T Consensus 55 ~~~~~~~w~~~A~~ly~~RP~s 76 (103)
T PF11027_consen 55 MFMMMMLWMVLAMALYLLRPSS 76 (103)
T ss_pred HHHHHHHHHHHHHHHHHcCchh
Confidence 4556688889999998765443
No 170
>PRK13108 prolipoprotein diacylglyceryl transferase; Reviewed
Probab=25.52 E-value=7e+02 Score=26.60 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhhc
Q 040051 546 GICTLVMLVYYFFFGLH 562 (590)
Q Consensus 546 ~~~~~i~~~~y~~~~~~ 562 (590)
+..+++|+++ +++.||
T Consensus 262 l~~il~gl~~-~~~~~~ 277 (460)
T PRK13108 262 TFVFIGAVVY-IILAPK 277 (460)
T ss_pred HHHHHHHHHH-HHHhhc
Confidence 4444555544 344444
No 171
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561). Cytochrome b(561), as found in non-vertebrate eumetazoans, similar to the Drosophila melanogaster CG1275 gene product. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=25.48 E-value=5.7e+02 Score=24.03 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=10.8
Q ss_pred CCccccccccHHHHHHHHHHH
Q 040051 511 PKTWGVPLVPWLPSLSIATNI 531 (590)
Q Consensus 511 ~~~~~~~~~p~~~~~~~~~~~ 531 (590)
++.+|....|+.-..+.+..+
T Consensus 125 ~~~~r~~~~p~H~~~Gl~~fv 145 (214)
T cd08764 125 PETLRAAYLPLHVFFGLFIFV 145 (214)
T ss_pred chHHHHHHhHHHHHHHHHHHH
Confidence 334455556665555555443
No 172
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=25.01 E-value=1.8e+02 Score=20.20 Aligned_cols=7 Identities=29% Similarity=0.197 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 040051 550 LVMLVYY 556 (590)
Q Consensus 550 ~i~~~~y 556 (590)
++++.+.
T Consensus 15 lLg~~I~ 21 (50)
T PF12606_consen 15 LLGLSIC 21 (50)
T ss_pred HHHHHHH
Confidence 4444443
No 173
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=25.01 E-value=95 Score=30.03 Aligned_cols=15 Identities=20% Similarity=0.080 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHH
Q 040051 545 FGICTLVMLVYYFFF 559 (590)
Q Consensus 545 ~~~~~~i~~~~y~~~ 559 (590)
.++..+++..+|.+.
T Consensus 121 G~~l~~~~~~~f~fi 135 (254)
T PF07857_consen 121 GVALVLVSGIIFSFI 135 (254)
T ss_pred HHHHHHHHHHheeee
Confidence 344456666666443
No 174
>PF15050 SCIMP: SCIMP protein
Probab=24.86 E-value=59 Score=26.91 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 040051 544 RFGICTLVMLVYYFFFGL 561 (590)
Q Consensus 544 ~~~~~~~i~~~~y~~~~~ 561 (590)
++.+.+.+|++.|.++++
T Consensus 16 II~vS~~lglIlyCvcR~ 33 (133)
T PF15050_consen 16 IILVSVVLGLILYCVCRW 33 (133)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556788888876553
No 175
>PF12263 DUF3611: Protein of unknown function (DUF3611); InterPro: IPR022051 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 180 and 205 amino acids in length. There are two completely conserved residues (W and G) that may be functionally important.
Probab=24.18 E-value=5.1e+02 Score=23.67 Aligned_cols=50 Identities=12% Similarity=0.096 Sum_probs=24.2
Q ss_pred HHHHHHHHHHhhcchhhhhhhh--hhccCCC-CchhhHHHHHHHHHHHHHHHH
Q 040051 268 IFKAAAVVYFAYGGFDNIATMA--EETKNPS-RDIPIGLLGSMSMITIIYCLM 317 (590)
Q Consensus 268 ~~~~~~~~~~~~~G~e~~~~~a--~E~k~p~-r~~p~a~~~~~~~~~~~y~l~ 317 (590)
+.......+|+|.-.-.+-.+. ++.++|+ .++.|.+..++.+..+--++.
T Consensus 66 l~~l~~si~~~fry~Rlar~L~~~~~~~~P~k~~~~~~l~~Gl~~nl~Gmllt 118 (183)
T PF12263_consen 66 LVALFFSIFWSFRYTRLARRLRSPNPAKRPSKADVVRLLRIGLIINLVGMLLT 118 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445566665433333332 3333443 456666666666554443333
No 176
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=23.87 E-value=2.5e+02 Score=30.43 Aligned_cols=15 Identities=33% Similarity=0.069 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 040051 486 GYVITVPLWFLGTLG 500 (590)
Q Consensus 486 ~~~~~~~~~~~~~~~ 500 (590)
.+++.....++.+-+
T Consensus 355 AYGiAVt~tM~iTT~ 369 (534)
T PF02705_consen 355 AYGIAVTGTMLITTI 369 (534)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444333
No 177
>PLN02680 carbon-monoxide oxygenase
Probab=23.63 E-value=6.3e+02 Score=24.08 Aligned_cols=22 Identities=18% Similarity=0.369 Sum_probs=12.6
Q ss_pred CCccccccccHHHHHHHHHHHH
Q 040051 511 PKTWGVPLVPWLPSLSIATNIF 532 (590)
Q Consensus 511 ~~~~~~~~~p~~~~~~~~~~~~ 532 (590)
++..|....|+.-..+.+..+.
T Consensus 145 ~~~~R~~~~p~H~~~G~~if~L 166 (232)
T PLN02680 145 SRNSRASLLPWHVFFGIYIYAL 166 (232)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 3344555667777666655543
No 178
>COG4060 MtrD Tetrahydromethanopterin S-methyltransferase, subunit D [Coenzyme metabolism]
Probab=23.48 E-value=1.1e+02 Score=27.29 Aligned_cols=33 Identities=15% Similarity=0.316 Sum_probs=25.1
Q ss_pred hhhccCCC-CchhhHHHHHHHHHHHHHHHHHHHH
Q 040051 289 AEETKNPS-RDIPIGLLGSMSMITIIYCLMALSL 321 (590)
Q Consensus 289 a~E~k~p~-r~~p~a~~~~~~~~~~~y~l~~~~~ 321 (590)
.|..+||| |..||+.+.+.+...+.-++..+..
T Consensus 194 IEGfHDPKfkk~pk~vias~vasil~~iia~l~v 227 (230)
T COG4060 194 IEGFHDPKFKKLPKAVIASLVASILAGIIAVLLV 227 (230)
T ss_pred eecccChhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence 46678997 8899999999888777666554443
No 179
>COG1272 Predicted membrane protein, hemolysin III homolog [General function prediction only]
Probab=23.29 E-value=6.5e+02 Score=23.89 Aligned_cols=65 Identities=14% Similarity=0.104 Sum_probs=36.6
Q ss_pred HHHHHHHHHH--HHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHH
Q 040051 488 VITVPLWFLG--TLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFF 558 (590)
Q Consensus 488 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~ 558 (590)
.+.++.|.+. .+++....+ ++.|+.+...+-.+.+.+++..--+...++. ....+++.|.+.|-.
T Consensus 119 ~~~~iiW~lal~Gi~~kl~~~--~~~r~ls~~~yl~mGw~~v~~~~~l~~~l~~----~~~~~l~~GGv~Ysv 185 (226)
T COG1272 119 ILLGLIWGLALAGILFKLFFK--KRFRKLSLVLYLAMGWLGLIVIKPLIAKLGL----IGLVLLALGGVLYSV 185 (226)
T ss_pred HHHHHHHHHHHHHHhhhhhcc--CcCceeeehhhHHHHHHHHHHHHHHHHhCch----HHHHHHHHHhHHhee
Confidence 3444444433 333333333 5566667666666666666665555555554 555666777777753
No 180
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=22.44 E-value=2e+02 Score=21.90 Aligned_cols=7 Identities=43% Similarity=0.624 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 040051 550 LVMLVYY 556 (590)
Q Consensus 550 ~i~~~~y 556 (590)
++.++++
T Consensus 21 lL~~~i~ 27 (79)
T PF04277_consen 21 LLILVIS 27 (79)
T ss_pred HHHHHHH
Confidence 3333333
No 181
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=22.36 E-value=44 Score=21.95 Aligned_cols=16 Identities=13% Similarity=0.407 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHhhc
Q 040051 547 ICTLVMLVYYFFFGLH 562 (590)
Q Consensus 547 ~~~~i~~~~y~~~~~~ 562 (590)
+.+++++..|+.|+|+
T Consensus 24 I~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 24 IIIVLGAFLFFWYRRK 39 (40)
T ss_pred HHHHHHHHhheEEecc
Confidence 3344444444444443
No 182
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=22.05 E-value=3.4e+02 Score=21.22 Aligned_cols=21 Identities=14% Similarity=0.213 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 040051 543 VRFGICTLVMLVYYFFFGLHA 563 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~~~~~~~ 563 (590)
.+.+.++.+|++.|-.|++..
T Consensus 53 FIlG~vl~lGilifs~y~~C~ 73 (91)
T PHA02680 53 FIVGAVLLLGLFVFSMYRKCS 73 (91)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 455777888888887777443
No 183
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=21.36 E-value=35 Score=33.80 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccccc
Q 040051 543 VRFGICTLVMLVYYFFFGLHATYD 566 (590)
Q Consensus 543 ~~~~~~~~i~~~~y~~~~~~~~~~ 566 (590)
+.+++.+++.+++|+++++|++++
T Consensus 263 iaIliIVLIMvIIYLILRYRRKKK 286 (299)
T PF02009_consen 263 IAILIIVLIMVIIYLILRYRRKKK 286 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444455666666655443333
No 184
>PLN02810 carbon-monoxide oxygenase
Probab=20.76 E-value=7.3e+02 Score=23.58 Aligned_cols=23 Identities=13% Similarity=0.274 Sum_probs=15.0
Q ss_pred CCCccccccccHHHHHHHHHHHH
Q 040051 510 TPKTWGVPLVPWLPSLSIATNIF 532 (590)
Q Consensus 510 ~~~~~~~~~~p~~~~~~~~~~~~ 532 (590)
.++.+|....|+....++...+.
T Consensus 144 ~~~~~R~~~lP~Hv~~Gl~if~L 166 (231)
T PLN02810 144 GSTNLRSGSLPWHVLFGLFVYIL 166 (231)
T ss_pred CchhHHHHHhHHHHHHHHHHHHH
Confidence 34556667778887777766543
No 185
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=20.32 E-value=9.1e+02 Score=24.46 Aligned_cols=69 Identities=9% Similarity=0.057 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHH
Q 040051 305 GSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTT 376 (590)
Q Consensus 305 ~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~ 376 (590)
.++++.++++.+....+.-....- ++....+..+...+++.+.+..+.+.+..+++......+++-.+.
T Consensus 40 ~gIivs~vlf~~~g~vim~ig~~f---~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~ 108 (349)
T COG3949 40 LGIILSTVLFTLSGAVIMTIGKKF---NATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLE 108 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHH
Confidence 455666666666555544322221 122345566666778888889998888888888777766665553
Done!