Query 040051
Match_columns 590
No_of_seqs 260 out of 3002
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 06:56:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 100.0 4.3E-52 1.5E-56 441.1 42.7 417 70-564 4-432 (445)
2 3gia_A Uncharacterized protein 100.0 1.5E-50 5E-55 429.1 40.5 364 72-449 4-371 (444)
3 4djk_A Probable glutamate/gamm 100.0 1.8E-49 6.2E-54 428.4 43.2 436 68-562 5-467 (511)
4 2jln_A MHP1; hydantoin, transp 99.4 7E-10 2.4E-14 117.6 35.0 283 70-378 21-329 (501)
5 3dh4_A Sodium/glucose cotransp 98.9 8.6E-06 2.9E-10 86.9 35.9 288 73-383 19-353 (530)
6 2xq2_A Sodium/glucose cotransp 98.8 3.4E-05 1.1E-09 83.5 38.9 283 73-375 48-377 (593)
7 2a65_A Leutaa, Na(+):neurotran 97.9 0.0069 2.4E-07 63.5 27.0 107 207-316 171-292 (519)
8 2wsw_A BCCT family betaine/car 95.7 2.4 8E-05 43.8 27.4 25 72-96 87-111 (509)
9 4ain_A Glycine betaine transpo 95.2 3.4 0.00012 42.9 23.1 25 72-96 92-116 (539)
10 3gia_A Uncharacterized protein 74.5 74 0.0025 31.9 31.3 45 520-564 373-424 (444)
11 2ks1_B Epidermal growth factor 52.0 14 0.00048 23.9 3.1 16 550-565 26-41 (44)
12 4djk_A Probable glutamate/gamm 51.7 2.1E+02 0.0072 29.1 22.8 22 459-480 414-435 (511)
13 2l2t_A Receptor tyrosine-prote 51.2 15 0.00052 23.7 3.2 16 550-565 25-40 (44)
14 2jwa_A Receptor tyrosine-prote 23.0 80 0.0027 20.3 3.1 13 550-562 26-38 (44)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=100.00 E-value=4.3e-52 Score=441.05 Aligned_cols=417 Identities=18% Similarity=0.254 Sum_probs=355.4
Q ss_pred ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHh
Q 040051 70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIEL 149 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~ 149 (590)
+++||++++++.+++.++.++|+|+|..++.. .. +|+.++++|++++++.++.+++++|+++++|++||.|+|+++.+
T Consensus 4 ~~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~-~~-~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~ 81 (445)
T 3l1l_A 4 DADAHKVGLIPVTLMVSGAIMGSGVFLLPANL-AS-TGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCF 81 (445)
T ss_dssp ---CCCBCHHHHHHHHHHHHCSSHHHHHHHHH-HH-HCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHS
T ss_pred CCCCCcccHHHHHHHHHHhHHhhhHHhhHHHH-HH-hhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHc
Confidence 34689999999999999999999999998874 34 78888999999999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHH
Q 040051 150 GDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVL 229 (590)
Q Consensus 150 g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~ 229 (590)
||.+|++.||.+++++....+.+...++++++.+++.....+ ...+++++++++.+.+|++|+|..+++
T Consensus 82 G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~in~~g~~~~~~~ 150 (445)
T 3l1l_A 82 GPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPW-----------VLTITCVVVLWIFVLLNIVGPKMITRV 150 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHH-----------HHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccH-----------HHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 999999999999999999999999999988876654211111 144678888899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccCCCCC-CCCCCC---hhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHH
Q 040051 230 NWIASAINTVVILFVIIVGFAHADASNLK-PFLPFG---SEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLG 305 (590)
Q Consensus 230 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~-~~~~~g---~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~ 305 (590)
+.+++.++++.++++++.++.+.+.+++. ++.+.+ +.+++.++...+|+|.|+|..++++||+|||+|++||++..
T Consensus 151 ~~~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~ 230 (445)
T 3l1l_A 151 QAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIG 230 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHH
Confidence 99999999999988888887766655543 333333 55788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCCC-CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCC
Q 040051 306 SMSMITIIYCLMALSLCVMQPYTDID-PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMI 384 (590)
Q Consensus 306 ~~~~~~~~y~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~l 384 (590)
+..+++++|++..++.....|.+++. .+.|+.++++..++++...++.+..+++.+++.++.+++.+|++++|||||.+
T Consensus 231 ~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~l 310 (445)
T 3l1l_A 231 GVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLF 310 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999988774 45699999998888899999999999999999999999999999999999999
Q ss_pred chhhhccCCCCCCchHHHHHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCccchh
Q 040051 385 PPWFALVHPKTGTPINANLLIVLASALIALF-------SGLDILSALLSLSTLFVFMMMAVALLVRRYYVREITPRKNLL 457 (590)
Q Consensus 385 P~~f~~~~~~~~~P~~ai~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 457 (590)
|++|+|+| |+++|+++++++.+++.++.+. ..++.+.++.+.+.++.|.+.+++++++|+|+| ++
T Consensus 311 P~~~~~~~-~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~y~~~~~~~~~~r~~~~-~~------ 382 (445)
T 3l1l_A 311 PPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHF-GK------ 382 (445)
T ss_dssp CGGGGCCC-TTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSS-GG------
T ss_pred cHHHHhcC-CCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cc------
Confidence 99999999 6799999999999988766654 247899999999999999999999999887755 11
Q ss_pred HHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCccccccccHHHHHHHHHHHHHHhcC
Q 040051 458 MLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVPWLPSLSIATNIFLMGSL 537 (590)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 537 (590)
|.|..++++.++.+.+++++...
T Consensus 383 ---------------------------------------------------------r~~~~~~~~~~~~~~~~~~~~~~ 405 (445)
T 3l1l_A 383 ---------------------------------------------------------ARPAYLAVTTIAFLYCIWAVVGS 405 (445)
T ss_dssp ---------------------------------------------------------GCTTTHHHHHHHHHHHHHHHHHS
T ss_pred ---------------------------------------------------------ccchhHHHHHHHHHHHHHHHHHc
Confidence 11245667778888888877777
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHhhccc
Q 040051 538 GYQAFVRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 538 ~~~~~~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
++.......+++++|+.+|+.++||++
T Consensus 406 ~~~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 406 GAKEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 887888888999999999987776643
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=100.00 E-value=1.5e-50 Score=429.11 Aligned_cols=364 Identities=19% Similarity=0.347 Sum_probs=327.0
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
.||+++.++.++++++.++|+|++..++..+.. +|+.++++|++++++.++.+++++|+++++|++||.|+|+++.+||
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~-~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~~Gg~y~~~~~~~G~ 82 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKI-AGRNLPETFILSGIYALLVAYSYTKLGAKIVSNAGPIAFIHKAIGD 82 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHH-HGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCTTTHHHHHHHHHCS
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHhHHHHhCc
Confidence 589999999999999999999999999988776 8999999999999999999999999999999999999999999999
Q ss_pred h-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 152 F-AAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 152 ~-~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
. .+...+|.+++++....+.++..++++++..++...+.+. ...++++++++.+.+|++|+|..++++
T Consensus 83 ~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~in~~g~~~~~~~~ 151 (444)
T 3gia_A 83 NIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTFN-----------IAITEIGIVAFFTALNFFGSKAVGRAE 151 (444)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH-----------HHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHH-----------HHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 6 3555689999999999999999999999988765332221 336788888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccccCCCCCC-CCCCChhhHHHHHHHHHHhhcchhhhhhhhhhccCCCCchhhHHHHHHHH
Q 040051 231 WIASAINTVVILFVIIVGFAHADASNLKP-FLPFGSEGIFKAAAVVYFAYGGFDNIATMAEETKNPSRDIPIGLLGSMSM 309 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p~r~~p~a~~~~~~~ 309 (590)
.+++.++++.++++++.++...+++++.+ +.++++.+++.++...+|+|.|+|.+++++||+|||+|++||++..+..+
T Consensus 152 ~~~~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~ 231 (444)
T 3gia_A 152 FFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILI 231 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHH
Confidence 99999999999998888888777777665 45556778888888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccCCCCC--CCcHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCCCchh
Q 040051 310 ITIIYCLMALSLCVMQPYTDID--PNAAYSVAFQRVGMKWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHMIPPW 387 (590)
Q Consensus 310 ~~~~y~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~lP~~ 387 (590)
++++|++..++.....|.+++. .+.|+.++.+...+++...++.+..+++.+++.++.+++.||++++|||||.+|++
T Consensus 232 ~~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~dg~lP~~ 311 (444)
T 3gia_A 232 VMFVYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEF 311 (444)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHSSCCSS
T ss_pred HHHHHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 9999999999998888877653 34578888887777888889999999999999999999999999999999999999
Q ss_pred hhccCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 040051 388 FALVHPKTGTPINANLLIVLASALIALFSGLDILSALLSLSTLFVFMMMAVALLVRRYYVRE 449 (590)
Q Consensus 388 f~~~~~~~~~P~~ai~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 449 (590)
|+|+| | ++|.++++++.+++.++.++.+++.+.++.+.+.++.|.+.+++.+++|+++|+
T Consensus 312 f~~~~-~-~~P~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 371 (444)
T 3gia_A 312 FERKV-W-FKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGG 371 (444)
T ss_dssp CCTTS-C-CSCTHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC
T ss_pred HhCCC-C-CCCcHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 99998 4 569999999999999888889999999999999999999999999998887654
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=100.00 E-value=1.8e-49 Score=428.42 Aligned_cols=436 Identities=17% Similarity=0.210 Sum_probs=323.8
Q ss_pred ccccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChHHHHHHHHHHHHH-HHHHHHHHHhhh--cccccccchhh
Q 040051 68 SENDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPAIVLSYVASGVSA-MLSVFCYTEFAI--EIPVAGGSFAY 144 (590)
Q Consensus 68 ~~~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~~~~~~ll~~~~~-~~~a~~~ael~~--~~P~~Gg~y~~ 144 (590)
++++++|+++++++++++++.++| ++..+. . ..+|+..++.+++++++. ++.+++++|+++ ++| +||.|+|
T Consensus 5 ~~~~~~r~l~~~~~~~l~~~~~ig--~~~~~~--~-~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~P-~GG~y~~ 78 (511)
T 4djk_A 5 VQTGKAKQLTLLGFFAITASMVMA--VYEYPT--F-ATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGWE-EGGVFAW 78 (511)
T ss_dssp -------CCCHHHHHHHTGGGGCC--GGGHHH--H-HTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC----CHHHH
T ss_pred ccCccCccccHHHHHHHHHHHHHh--hchhHH--H-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCC-CCChhhh
Confidence 456789999999999999999986 333333 2 338888777777777775 569999999999 999 9999999
Q ss_pred hHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchh
Q 040051 145 LRIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTR 224 (590)
Q Consensus 145 ~~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k 224 (590)
+++.+||.+|+++||.+|++++...+......+.+++.++.. ++.+.+.....+++++++++++.+|++|+|
T Consensus 79 ~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------p~~~~~~~~~~~~~~~~~~~~~~in~~g~~ 150 (511)
T 4djk_A 79 VSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILKW--------PALNEDPITKTIAALIILWALALTQFGGTK 150 (511)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTC--------GGGTSCSSHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------cccccCcHHHHHHHHHHHHHHHHHHHhChH
Confidence 999999999999999999999999998888888888765421 112222222457788889999999999999
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHhhhccc---cC----CCCCCCCCCC-hhhHHHHHHHHHHhhcchhhhhhhhhhccCC
Q 040051 225 KTSVLNWIASAINTVV-ILFVIIVGFAHA---DA----SNLKPFLPFG-SEGIFKAAAVVYFAYGGFDNIATMAEETKNP 295 (590)
Q Consensus 225 ~~~~~~~~~~~~~i~~-~~~~~i~~~~~~---~~----~~~~~~~~~g-~~~~~~~~~~~~~~~~G~e~~~~~a~E~k~p 295 (590)
..++++.+.+.++++. ++++++.++... +. .+..++.|+. ..+.+.++...+|+|.|+|++++++||+|||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P 230 (511)
T 4djk_A 151 YTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNP 230 (511)
T ss_dssp SHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCc
Confidence 9999999998886543 444555444321 11 1223333321 1233455677899999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHH----HHHHhC--hhHHHHHHHHHHHHHHHHHHHHhhh
Q 040051 296 SRDIPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSV----AFQRVG--MKWAKYLVALGALKGMTTVLLVGAL 369 (590)
Q Consensus 296 ~r~~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~ 369 (590)
+|++|||++.++.+++++|++..+++...+|.++...+++..+ +++..| .++...++.+..+++.+++.++.++
T Consensus 231 ~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (511)
T 4djk_A 231 GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIV 310 (511)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988766554433 333455 5788889999999999999999999
Q ss_pred chhHHHHHHHhcCCCchhhhccCCCCCCchHHHHHHHHHHHH-HHHHhh--------HHHHHHHHHHHHHHHHHHHHHHH
Q 040051 370 GNARYTTHIARAHMIPPWFALVHPKTGTPINANLLIVLASAL-IALFSG--------LDILSALLSLSTLFVFMMMAVAL 440 (590)
Q Consensus 370 ~~sR~l~~~ard~~lP~~f~~~~~~~~~P~~ai~~~~~~~~~-~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~ 440 (590)
+.||++++|||||.+|++|+|+| |+++|+++++++.++..+ +..+++ ++.+.++.+.+.++.|.+.++++
T Consensus 311 ~~sR~l~a~ardg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l~~~~~~~~~~~~~~~f~~l~~~~~~~~~~~y~~~~~~~ 389 (511)
T 4djk_A 311 GPSRGMYVTAQKNLLPAAFAKMN-KNGVPVTLVISQLVITSIALIILTNTGGGNNMSFLIALALTVVIYLCAYFMLFIGY 389 (511)
T ss_dssp HHHHHTCHHHHGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCcccHHHHhcC-CCCCcHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 579999999998544333 333343 78899999999999999999999
Q ss_pred HHHhhhccCCCCccchhHHHHHHHHHHHHHhHHhhhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCCCCCCcccccccc
Q 040051 441 LVRRYYVREITPRKNLLMLVIFLLIIIASSAGISAYWGLKPNGWVGYVITVPLWFLGTLGISVLLPQQRTPKTWGVPLVP 520 (590)
Q Consensus 441 ~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 520 (590)
+++|+|+++.++++|. ..++++.+..+++++++.++.++..++|+..+...
T Consensus 390 ~~~r~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~-------- 440 (511)
T 4djk_A 390 IVLVLKHPDLKRTFNI---------------------PGGKGVKLVVAIVGLLTSIMAFIVSFLPPDNIQGD-------- 440 (511)
T ss_dssp HHHHHHCCSCCCSCCC---------------------SSTTHHHHHHHHHHHHHHHHHHHHTTCCCSCSTTC--------
T ss_pred HHHHHhCCCCCCCeec---------------------CCCchHHHHHHHHHHHHHHHHHHeeeeCCccccCC--------
Confidence 9999888776666552 12233334567777777777777777776543322
Q ss_pred HHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHhhc
Q 040051 521 WLPSLSIATNIFLMGSLGYQAFVRFGICTLVMLVYYFFFGLH 562 (590)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~y~~~~~~ 562 (590)
..+|| .....+++++++.++|+.|+++
T Consensus 441 --------------~~~~~-~~~~~~~~~~~~~i~~~~~~~~ 467 (511)
T 4djk_A 441 --------------STDMY-VELLVVSFLVVLALPFILYAVH 467 (511)
T ss_dssp --------------CCCCH-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred --------------chHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 23455 3345556666666666665544
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=99.41 E-value=7e-10 Score=117.64 Aligned_cols=283 Identities=14% Similarity=0.028 Sum_probs=160.0
Q ss_pred ccccccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH---HHHHHHHHHHHHHHHHHHHHHhhhccccccc-chhhh
Q 040051 70 NDMKRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA---IVLSYVASGVSAMLSVFCYTEFAIEIPVAGG-SFAYL 145 (590)
Q Consensus 70 ~~l~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~---~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg-~y~~~ 145 (590)
++.+|+.++++.+.+=++..+..+.+..-+... .|.. ++++.+++.++........+.++.+ .|- .....
T Consensus 21 p~~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~---~GLs~~~a~lai~lG~li~~~~~~l~~~~G~~---~Gl~~~v~~ 94 (501)
T 2jln_A 21 RYAERSVGPFSLAAIWFAMAIQVAIFIAAGQMT---SSFQVWQVIVAIAAGCTIAVILLFFTQSAAIR---WGINFTVAA 94 (501)
T ss_dssp CGGGCCBCHHHHHHHHHHHHCSTHHHHHHHHHT---TTSCHHHHHHHHHHHHHHHHHHHHHHTHHHHH---HCCCHHHHT
T ss_pred ChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHh---cCcCHHHHHHHHHHHHHHHHHHHHHHhHHHhh---cCCChhhhh
Confidence 334677899999988888777665554333322 2432 5555555555544444444444444 343 45577
Q ss_pred HHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----cCCCCccccccccccccCchhHHHHHHHHHHHHHHhh
Q 040051 146 RIELGDFAAFITAGNILLESIVGGAAVARAWTSYFTTLL----NREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASI 221 (590)
Q Consensus 146 ~~~~g~~~g~~~g~~~~l~~~~~~a~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 221 (590)
+..||+..+.+......+..+...+......++.+...+ +..+ ..+..+++.++...+.++
T Consensus 95 R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~---------------~~v~~~i~~~l~~~~~~~ 159 (501)
T 2jln_A 95 RMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTN---------------LPLWIVIFGAIQVVTTFY 159 (501)
T ss_dssp TTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------------HHHHHHHHHHHHHHHHTT
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch---------------HHHHHHHHHHHHHHHHHh
Confidence 889999999988888878777777777777777776654 2211 124445566677778899
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHHhhhccccC--CCCCCCCC-CChhhHHHHHHHH-HHhhcchhhhhhhhhhccCCCC
Q 040051 222 STRKTSVLNWIASAINTVVILFVIIVGFAHADA--SNLKPFLP-FGSEGIFKAAAVV-YFAYGGFDNIATMAEETKNPSR 297 (590)
Q Consensus 222 g~k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~--~~~~~~~~-~g~~~~~~~~~~~-~~~~~G~e~~~~~a~E~k~p~r 297 (590)
|.|...+++.+...+.++.++.+.+..+...+. .+.....+ ....+++.++..+ .+...+.-..+.++.+.|++++
T Consensus 160 G~~~i~~~~~~~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~ 239 (501)
T 2jln_A 160 GITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPN 239 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCcc
Confidence 999999999999888777776666655544332 11111111 1122344444332 2222344557788899988754
Q ss_pred c-----------hhhHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCcHHHHHHHHhChhHH-HHHHH-HHHHHHHHHHH
Q 040051 298 D-----------IPIGLLGSMSMITIIYCLMALSLCVMQPYTDIDPNAAYSVAFQRVGMKWA-KYLVA-LGALKGMTTVL 364 (590)
Q Consensus 298 ~-----------~p~a~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~-~~~~~~~~~~~ 364 (590)
. .-.+...+..+...+..+......... ...+|...+.....++.. ..+.. +.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~~~~~~~-----~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn 314 (501)
T 2jln_A 240 ASREGQTKADARYATAQWLGMVPASIIFGFIGAASMVLV-----GEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTN 314 (501)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----SCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTH
T ss_pred ccccchhhccchHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 1 333333333333332222222222111 223455444443333322 45556 66677776665
Q ss_pred HH-hhhchhHHHHHH
Q 040051 365 LV-GALGNARYTTHI 378 (590)
Q Consensus 365 ~~-~~~~~sR~l~~~ 378 (590)
.. ..++.+--+..+
T Consensus 315 ~~~n~ys~~~~l~~~ 329 (501)
T 2jln_A 315 PAANLLSPAYTLCST 329 (501)
T ss_dssp HHHHTHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHh
Confidence 53 677776665554
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.88 E-value=8.6e-06 Score=86.87 Aligned_cols=288 Identities=14% Similarity=0.054 Sum_probs=145.0
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
.|+++++...+-..+..+++..+......... .|.. ..+.|. +.+.....+..+...-.+. +.-..++|.++.+|+
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~-~G~~~~~~~~~-~~~~~~i~~~~~~p~~~~~-~~~T~~e~l~~Rfg~ 95 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 95 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHH-TCGGGHHHHHH-HHHHHHHHHHHTHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-hChHHHHHHHH-HHHHHHHHHHHHHHHHHHc-CCccHHHHHHHHcCc
Confidence 58899998887777777766555555444444 5654 333232 2222223333333333332 344689999999999
Q ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 152 FAAFITAGNILLESIV-GGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
....+.+....+.+.. ..+......+..++..++.+. ...+.+..++.......-|.|...+..
T Consensus 96 ~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~Gi~~---------------~~~i~i~~~i~~~Yt~~GGl~aV~~TD 160 (530)
T 3dh4_A 96 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL---------------MYSILGLALFALVYSIYGGLSAVVWTD 160 (530)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCH---------------HHHHHHHHHHHHHTTC------CCSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH---------------HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 8887777665544433 344555555666777765321 111222222223334446888887777
Q ss_pred HHHHHHHHHHHHHHHHhhhccc----------------cCCCCCCC----CC-----CChhhHHHHHHHHHHhhcchhh-
Q 040051 231 WIASAINTVVILFVIIVGFAHA----------------DASNLKPF----LP-----FGSEGIFKAAAVVYFAYGGFDN- 284 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~----------------~~~~~~~~----~~-----~g~~~~~~~~~~~~~~~~G~e~- 284 (590)
.+-.++.++..+++.+..+... +++.+..+ .+ .++...+.+.......|.|.+-
T Consensus 161 ~iQ~~im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~ 240 (530)
T 3dh4_A 161 VIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQY 240 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 6666666554444333322210 11111111 01 1111111111112233444432
Q ss_pred hhhhhhhccCCCCchhhHHHHHHHHHHHHHHH---HHHHHhhccc----------------CCCCCCCcHHHHHHHHhCh
Q 040051 285 IATMAEETKNPSRDIPIGLLGSMSMITIIYCL---MALSLCVMQP----------------YTDIDPNAAYSVAFQRVGM 345 (590)
Q Consensus 285 ~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l---~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~ 345 (590)
..+-.=..||+ |+..|+...+.+...++.++ ..++.....+ ++..+.+..++...+ ..+
T Consensus 241 i~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~-~lp 318 (530)
T 3dh4_A 241 IIQRTLAAKSV-SEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQ-FLP 318 (530)
T ss_dssp HHHHHHSSSCH-HHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHT-TCC
T ss_pred HHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHH-Hcc
Confidence 33333446775 67778887776554333221 1111111110 122234556666665 666
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHhcCC
Q 040051 346 KWAKYLVALGALKGMTTVLLVGALGNARYTTHIARAHM 383 (590)
Q Consensus 346 ~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l~~~ard~~ 383 (590)
+++.-++..+++.+.+++..+.+.+.|-.+ ++|=.
T Consensus 319 ~~l~Gl~~a~llAA~mST~ss~l~s~st~~---~~Diy 353 (530)
T 3dh4_A 319 VGVKGVVFAALAAAIVSSLASMLNSTATIF---TMDIY 353 (530)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HhHHH
Confidence 777788888888888888888888877764 46643
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.83 E-value=3.4e-05 Score=83.48 Aligned_cols=283 Identities=14% Similarity=0.064 Sum_probs=146.1
Q ss_pred cccCCHHHHHHHHhhhhhcchhhhcchHhHhhccChH-HHHHHHHHHHHHHHHHHHHHHhhhcccccccchhhhHHHhch
Q 040051 73 KRCLTWWDLTWFGFGAVIGAGIFVLTGQEAHKHAGPA-IVLSYVASGVSAMLSVFCYTEFAIEIPVAGGSFAYLRIELGD 151 (590)
Q Consensus 73 ~r~l~~~~~~~~~~~~~ig~gi~~~~~~~~~~~~G~~-~~~~~ll~~~~~~~~a~~~ael~~~~P~~Gg~y~~~~~~~g~ 151 (590)
.|+++++...+-.++..+++..+......... .|.. ..+.|. +.+.....++.+...-.+. +.-..++|.++.+|+
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~-~G~~~~~~~~~-~~~~~~~~~~~~~p~~~r~-~~~T~~e~l~~Rfg~ 124 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYS-IGLAIASYEWM-SAITLIIVGKYFLPIFIEK-GIYTIPEFVEKRFNK 124 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHH-TCGGGGHHHHH-HHHHHHHHHHTHHHHHHHT-TCCSHHHHHHHHTCH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHH-cCHHHHHHHHH-HHHHHHHHHHHHHHHHHhC-CCCCcHHHHHHHccC
Confidence 47888886665555566665555544444333 5643 323222 2222233333344443333 334689999999999
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCccccccccccccCchhHHHHHHHHHHHHHHhhchhhhhHHH
Q 040051 152 FAAFITAGNILLESI-VGGAAVARAWTSYFTTLLNREPNSLRIHTNLREGYNLLDPIAVAVLATAATIASISTRKTSVLN 230 (590)
Q Consensus 152 ~~g~~~g~~~~l~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~k~~~~~~ 230 (590)
....+......+.+. ...+....+.+..++..++.+. ...+.+..++........|.|...+..
T Consensus 125 ~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~Gi~~---------------~~~i~i~~~i~~~Yt~~GGl~av~~TD 189 (593)
T 2xq2_A 125 KLKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPL---------------MYSILGLALFALVYSIYGGLSAVVWTD 189 (593)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCCH---------------HHHHHHHHHHHHHHHHTTC---CCHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccH---------------HHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 888777766554443 3445555566667777775321 112222333345555667899888877
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc----------------CCCCCCCCCCC--------hhhHHH-HHHHHHHhhcchh-h
Q 040051 231 WIASAINTVVILFVIIVGFAHAD----------------ASNLKPFLPFG--------SEGIFK-AAAVVYFAYGGFD-N 284 (590)
Q Consensus 231 ~~~~~~~i~~~~~~~i~~~~~~~----------------~~~~~~~~~~g--------~~~~~~-~~~~~~~~~~G~e-~ 284 (590)
.+=.+++++..+++.+..+...+ ++.+..+.+.+ +...+. +.......+.|.+ .
T Consensus 190 ~iQ~iiml~~~l~v~~~~l~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~q~ 269 (593)
T 2xq2_A 190 VIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQY 269 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHCGGGSCSSCCSSSGGGGTSCTTHHHHSTHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHhhChhhcccccCCCCcccccchHHHHHHHHHHHHHHHhhcCChH
Confidence 76666666555444333222110 11111111111 111111 1112223344544 3
Q ss_pred hhhhhhhccCCCCchhhHHHHHHHHHHHHHHHHH---HHHhhc-cc--------------CCCC-CCCcHHHHHHHHhCh
Q 040051 285 IATMAEETKNPSRDIPIGLLGSMSMITIIYCLMA---LSLCVM-QP--------------YTDI-DPNAAYSVAFQRVGM 345 (590)
Q Consensus 285 ~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l~~---~~~~~~-~~--------------~~~~-~~~~~~~~~~~~~~~ 345 (590)
..+..=+.||+ |+..|+...+.+...++.++.. +..... .+ ..+. +.+..++... ...+
T Consensus 270 ~~qR~laaks~-k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~p~~~~~d~~~p~l~-~~lp 347 (593)
T 2xq2_A 270 IIQRTLAAKSV-SEAQKGIVFAAFLALIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLT-QFLP 347 (593)
T ss_dssp HHHHHHTTSCH-HHHHHHHHHHHHHTTTHHHHHTHHHHHHHHHHTCHHHHHHHC-----CCCCSTBGGGHHHHHH-HTSC
T ss_pred HHHHhheeCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccCCCCCChhhHHHHHH-HHcC
Confidence 45556678885 7788888877766544443221 111111 00 1122 2345556566 6677
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhhchhHHH
Q 040051 346 KWAKYLVALGALKGMTTVLLVGALGNARYT 375 (590)
Q Consensus 346 ~~~~~i~~~~~~~~~~~~~~~~~~~~sR~l 375 (590)
+++.-++..+++.+.+++..+.+.+.|-.+
T Consensus 348 ~~l~gl~~a~llaA~mST~~s~l~a~st~~ 377 (593)
T 2xq2_A 348 VGVKGVVFAALAAAIVSSLASMLNSTATIF 377 (593)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888888887777664
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=97.87 E-value=0.0069 Score=63.46 Aligned_cols=107 Identities=15% Similarity=0.216 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhch-hhhhHHHHHHHHHHHHHHHHHHHhhhccccC-------------CCCCCCCCCChhhHHHHH
Q 040051 207 IAVAVLATAATIASIST-RKTSVLNWIASAINTVVILFVIIVGFAHADA-------------SNLKPFLPFGSEGIFKAA 272 (590)
Q Consensus 207 ~~~~~~~~~~~i~~~g~-k~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-------------~~~~~~~~~g~~~~~~~~ 272 (590)
..+++.++...+...|+ |-.+|+..++...-.+.++++.+-++...++ .+++... +...+..+.
T Consensus 171 ~~~~~w~i~~~ii~~Gv~kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~--~~~vw~~A~ 248 (519)
T 2a65_A 171 VFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLK--DPGVWIAAV 248 (519)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhC--CHHHHHHHH
Confidence 33455566677778899 7789999988877777766666655543331 0111111 123467778
Q ss_pred HHHHHhhc-chhhhhhhhhhccCCCCchhhHHHHHHHHHHHHHHH
Q 040051 273 AVVYFAYG-GFDNIATMAEETKNPSRDIPIGLLGSMSMITIIYCL 316 (590)
Q Consensus 273 ~~~~~~~~-G~e~~~~~a~E~k~p~r~~p~a~~~~~~~~~~~y~l 316 (590)
.-++|++. |+-....++.-.|+ +.|++|........-..+-++
T Consensus 249 gQ~FFSLslG~G~~ity~SY~~~-~~n~~~~a~~v~~~n~~~sll 292 (519)
T 2a65_A 249 GQIFFTLSLGFGAIITYASYVRK-DQDIVLSGLTAATLNEKAEVI 292 (519)
T ss_dssp HHHHHHHTTTSSHHHHHHTTSCT-TSCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhHHHHhHHhhhhcccCC-CcChHhhHHHHHHHHHHHHHH
Confidence 88889885 88888888888776 678888777777666555443
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=95.69 E-value=2.4 Score=43.85 Aligned_cols=25 Identities=12% Similarity=0.150 Sum_probs=20.5
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFV 96 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~ 96 (590)
-|.+++.++.+++.++.-+|.|+..
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~f 111 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLF 111 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhh
Confidence 3567999999999999888888644
No 9
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=95.23 E-value=3.4 Score=42.89 Aligned_cols=25 Identities=16% Similarity=0.127 Sum_probs=21.0
Q ss_pred ccccCCHHHHHHHHhhhhhcchhhh
Q 040051 72 MKRCLTWWDLTWFGFGAVIGAGIFV 96 (590)
Q Consensus 72 l~r~l~~~~~~~~~~~~~ig~gi~~ 96 (590)
-|.++|.++.+++.++.-+|.|+..
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~F 116 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMF 116 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHH
T ss_pred CCCCCcchHHHHHHHHHhhcchhee
Confidence 3678999999999999988888753
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=74.45 E-value=74 Score=31.88 Aligned_cols=45 Identities=11% Similarity=0.055 Sum_probs=23.4
Q ss_pred cHHHHHHHHHHHHHHhcCCh-------hhHHHHHHHHHHHHHHHHHHhhccc
Q 040051 520 PWLPSLSIATNIFLMGSLGY-------QAFVRFGICTLVMLVYYFFFGLHAT 564 (590)
Q Consensus 520 p~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~i~~~~y~~~~~~~~ 564 (590)
|+.+.++++.+++.+....+ ........+++...++|..++++++
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (444)
T 3gia_A 373 KEIVIFSFIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTK 424 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46666777766665444332 1233444455555555555554433
No 11
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=52.04 E-value=14 Score=23.90 Aligned_cols=16 Identities=19% Similarity=0.127 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhcccc
Q 040051 550 LVMLVYYFFFGLHATY 565 (590)
Q Consensus 550 ~i~~~~y~~~~~~~~~ 565 (590)
++.+++|++++||+.+
T Consensus 26 ii~~~~~~~~RRr~~~ 41 (44)
T 2ks1_B 26 VVALGIGLFMRRRHIV 41 (44)
T ss_dssp HHHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHhhhhHhh
Confidence 4455555555555443
No 12
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=51.69 E-value=2.1e+02 Score=29.10 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHhHHhhhcCCC
Q 040051 459 LVIFLLIIIASSAGISAYWGLK 480 (590)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~ 480 (590)
....++++.+...++..++...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~p~~ 435 (511)
T 4djk_A 414 VVAIVGLLTSIMAFIVSFLPPD 435 (511)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHeeeeCCc
Confidence 3566777777777777777643
No 13
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=51.15 E-value=15 Score=23.73 Aligned_cols=16 Identities=13% Similarity=0.225 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhhcccc
Q 040051 550 LVMLVYYFFFGLHATY 565 (590)
Q Consensus 550 ~i~~~~y~~~~~~~~~ 565 (590)
++++.+|++++||+.+
T Consensus 25 ii~~~~~~~~RRRr~~ 40 (44)
T 2l2t_A 25 IVGLTFAVYVRRKSIK 40 (44)
T ss_dssp HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHhhhhhhh
Confidence 4445555555555433
No 14
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=22.98 E-value=80 Score=20.34 Aligned_cols=13 Identities=8% Similarity=0.199 Sum_probs=5.5
Q ss_pred HHHHHHHHHHhhc
Q 040051 550 LVMLVYYFFFGLH 562 (590)
Q Consensus 550 ~i~~~~y~~~~~~ 562 (590)
++++++.++.+||
T Consensus 26 i~~l~~~~~~RRR 38 (44)
T 2jwa_A 26 VLGVVFGILIKRR 38 (44)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHhheehh
Confidence 3444443344444
Done!