BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040053
         (74 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5FP95|CYSG_GLUOX Siroheme synthase OS=Gluconobacter oxydans (strain 621H) GN=cysG
          PE=3 SV=1
          Length = 473

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 7  LIFGHAAQFITVNDYRFHPSVNGWLERGLVRPWGGMIGE 45
          L+  H A+ I V   + HP+V GW+E G VR  G    E
Sbjct: 45 LLLDHGAR-IDVLAEKLHPAVQGWVENGRVRHVGERADE 82


>sp|Q1MC31|PGK_RHIL3 Phosphoglycerate kinase OS=Rhizobium leguminosarum bv. viciae
           (strain 3841) GN=pgk PE=3 SV=1
          Length = 401

 Score = 29.3 bits (64), Expect = 7.2,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 14/24 (58%)

Query: 26  SVNGWLERGLVRPWGGMIGELEVG 49
           ++N W+ER     W G +G  E+G
Sbjct: 304 AINAWIERAATLVWNGPLGAFEIG 327


>sp|Q5YPL7|TYSY_NOCFA Thymidylate synthase OS=Nocardia farcinica (strain IFM 10152)
           GN=thyA PE=3 SV=1
          Length = 266

 Score = 28.9 bits (63), Expect = 9.2,   Method: Compositional matrix adjust.
 Identities = 10/28 (35%), Positives = 17/28 (60%)

Query: 2   IGPQPLIFGHAAQFITVNDYRFHPSVNG 29
           + P P +F +  + +TV DYR HP++  
Sbjct: 235 LRPAPSLFDYRFEDVTVTDYRHHPAIKA 262


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.149    0.504 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,229,069
Number of Sequences: 539616
Number of extensions: 1221125
Number of successful extensions: 2319
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2317
Number of HSP's gapped (non-prelim): 3
length of query: 74
length of database: 191,569,459
effective HSP length: 45
effective length of query: 29
effective length of database: 167,286,739
effective search space: 4851315431
effective search space used: 4851315431
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)