BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040055
(387 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + K TPLH++A GHL+ + LL
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 69
Query: 71 KPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLA+ EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 70 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 126
Query: 130 EVVQELISANFD 141
E+V+ L+ A D
Sbjct: 127 EIVEVLLKAGAD 138
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 67/124 (54%), Gaps = 8/124 (6%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD 113
+A G D + L+ + ++ AK+ D ++PLHLA+ EGH++IV+ LL A D D
Sbjct: 21 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKD 77
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RV 169
+DG PLHLAA G +E+V+ L+ A D G T LHL L I ++
Sbjct: 78 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 137
Query: 170 DVNS 173
DVN+
Sbjct: 138 DVNA 141
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+DG PLHLAA G +E+V+ L+ A D G T LHL
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ ++G+T L
Sbjct: 92 HLEIVEVLLKAGADVNAKDKDGYTPLH 118
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + K TPLH++A GHL+ + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71 KPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLA+ EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 58 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD 141
E+V+ L+ A D
Sbjct: 115 EIVEVLLKAGAD 126
Score = 62.4 bits (150), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 77/151 (50%), Gaps = 19/151 (12%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD 113
+A G D + L+ + ++ AK+ D ++PLHLA+ EGH++IV+ LL A D D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKD 65
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RV 169
+DG PLHLAA G +E+V+ L+ A D G T LHL L I ++
Sbjct: 66 KDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 125
Query: 170 DVNS-----------LIENGFTMLQKDLQEA 189
DVN+ I+NG + + LQ+A
Sbjct: 126 DVNAQDKFGKTPFDLAIDNGNEDIAEVLQKA 156
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 74.7 bits (182), Expect = 7e-14, Method: Composition-based stats.
Identities = 47/124 (37%), Positives = 71/124 (57%), Gaps = 2/124 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ K LL ++ + D +PLHLA+ GH+++VK LL A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV 169
D++GR PLHLAA G +EVV+ L+ A D +G T LHL + L + ++ +
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
Query: 170 DVNS 173
+ +
Sbjct: 122 EAGA 125
Score = 63.5 bits (153), Expect = 2e-10, Method: Composition-based stats.
Identities = 42/104 (40%), Positives = 60/104 (57%), Gaps = 5/104 (4%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+ GH+++VK LL A D D++GR PLHLAA G +EVV+ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRV----DVNSLIENGFTMLQ 183
+G T LHL + L + ++ + DVN+ +NG T L
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLH 106
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV----D 170
+GR PLHLAA G +EVV+ L+ A D +G T LHL + L + ++ + D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 171 VNSLIENGFTMLQ 183
VN+ +NG T L
Sbjct: 61 VNAKDKNGRTPLH 73
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 74.7 bits (182), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 52/132 (39%), Positives = 73/132 (55%), Gaps = 7/132 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + K TPLH++A GHL+ + LL
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGY---TPLHLAAREGHLEIVEVLLKA 57
Query: 71 KPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
++ AK+ D ++PLHLA+ EGH++IV+ LL A D D+DG PLHLAA G +
Sbjct: 58 GADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHL 114
Query: 130 EVVQELISANFD 141
E+V+ L+ A D
Sbjct: 115 EIVEVLLKAGAD 126
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/106 (39%), Positives = 57/106 (53%), Gaps = 5/106 (4%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D ++PLHLA+ EGH++IV+ LL A D D+DG PLHLAA G +E+V+ L+ A
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFT 180
D G T LHL L I ++ DVN+ + G T
Sbjct: 91 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKT 136
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+DG PLHLAA G +E+V+ L+ A D G T LHL
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG 79
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ ++G+T L
Sbjct: 80 HLEIVEVLLKAGADVNAKDKDGYTPLH 106
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + + TPLH++A GHL+ + LL H
Sbjct: 13 DLGRKLLEAARAGQDDEVRILMANGADV---NAADNTGTTPLHLAAYSGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D ++PLHLA+ GH++IV E+LL N D DG PLHLAA G +E
Sbjct: 70 GADVDAS-DVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKHGAD 138
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D+ +PLHLA+ GH++IV E+LL + +D G PLHLAA G +E+V+ L+
Sbjct: 44 DNTGTTPLHLAAYSGHLEIV-EVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D + G T LHL L I ++ DVN+
Sbjct: 103 GADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNA 141
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN AD G PLHLAA G +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN++ +G T L
Sbjct: 92 HLEIVEVLLKNGADVNAMDSDGMTPLH 118
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + T TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV-NARDFTGW--TPLHLAAHFGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ + DSL +PLHLA+ GH++IV E+LL N +D G PLHLAA RG +E
Sbjct: 70 GADVNAK-DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKNGAD 138
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 54/102 (52%), Gaps = 7/102 (6%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+ GH++IV E+LL N D G PLHLAA RG +E+V+ L+ D
Sbjct: 49 TPLHLAAHFGHLEIV-EVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGADVN 107
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKD 185
HG T LHL L I ++ L++NG + +D
Sbjct: 108 ASDSHGFTPLHLAAKRGHLEIVEV------LLKNGADVNAQD 143
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA G +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ +GFT L
Sbjct: 92 HLEIVEVLLKNGADVNASDSHGFTPLH 118
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADV---NAADVVGWTPLHLAAYWGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D+L +PLHLA+ GH++IV E+LL N D +G PLHLAA RG +E
Sbjct: 70 GADV-NAYDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D + +PLHLA+ GH++IV E+LL N D G PLHLAA G +E+V+ L+
Sbjct: 44 DVVGWTPLHLAAYWGHLEIV-EVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKN 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D +G T LHL L I ++ DVN+
Sbjct: 103 GADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 67/124 (54%), Gaps = 10/124 (8%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL- 74
L+ A+ G + + L++N + + +L TPLH++A GHL+ + LL + ++
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADV---NAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR---VEV 131
AK+ + + +PLHLA+ GH++IV+ LL D D+ G+ ++ G E+
Sbjct: 108 AKDDNGI--TPLHLAANRGHLEIVEVLLKYGADVN-AQDKFGKTAFDISINNGNEDLAEI 164
Query: 132 VQEL 135
+Q+L
Sbjct: 165 LQKL 168
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN AD G PLHLAA G +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ +NG T L
Sbjct: 92 HLEIVEVLLKNGADVNAKDDNGITPLH 118
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 7/143 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L++N + + S TPLH +A GH + K L++ ++
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVVQ 133
+ DS +PLH A+ EGH +IVK LL +K A + A D DGR PLH AA G E+V+
Sbjct: 64 NAK-DSDGRTPLHYAAKEGHKEIVK--LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 120
Query: 134 ELISANFDSVLVKFHGDTVLHLC 156
LIS D G T L L
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLA 143
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 49/84 (58%), Gaps = 2/84 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH +A GH + K L++ ++ + DS +PLH A+ EGH +IVK LL++
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVK-LLISKGADV 129
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQ 133
+D DGR PL LA G E+V+
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEIVK 153
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 5/99 (5%)
Query: 89 ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFH 148
A+ G+ VK+L+ D +D DGR PLH AA G E+V+ LIS D
Sbjct: 11 AAENGNKDRVKDLIENGADVN-ASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 149 GDTVLHLCTTSYLLSIPQIRV----DVNSLIENGFTMLQ 183
G T LH I ++ + DVN+ +G T L
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH 108
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NASDHVGWTPLHLAAYFGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ + DSL +PLHLA+ GH+++V E+LL N D +G PLHLAA G +E
Sbjct: 70 GADVNAD-DSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKHGAD 138
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 52/99 (52%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D + +PLHLA+ GH++IV E+LL N D G PLHLAA RG +EVV+ L+
Sbjct: 44 DHVGWTPLHLAAYFGHLEIV-EVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKN 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D +G T LHL L I ++ DVN+
Sbjct: 103 GADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN +D G PLHLAA G +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L + ++ DVN+ NGFT L
Sbjct: 92 HLEVVEVLLKNGADVNANDHNGFTPLH 118
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 69.3 bits (168), Expect = 3e-12, Method: Composition-based stats.
Identities = 40/89 (44%), Positives = 56/89 (62%), Gaps = 2/89 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ K LL ++ + D +PLHLA+ GH+++VK LL A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISA 138
D++GR PLHLAA G +EVV+ L+ A
Sbjct: 63 -AKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 59.7 bits (143), Expect = 3e-09, Method: Composition-based stats.
Identities = 35/90 (38%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+ GH+++VK LL A D D++GR PLHLAA G +EVV+ L+ A D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN 62
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRVDVNS 173
+G T LHL + L + ++ ++ +
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 40/73 (54%), Gaps = 4/73 (5%)
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV----D 170
+GR PLHLAA G +EVV+ L+ A D +G T LHL + L + ++ + D
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 171 VNSLIENGFTMLQ 183
VN+ +NG T L
Sbjct: 61 VNAKDKNGRTPLH 73
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + T + L TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV-NATDASGL--TPLHLAATYGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D +PLHLA+ GH++IV+ LL D V D G PLHLAA+ G +E
Sbjct: 70 GADV-NAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAV-DTWGDTPLHLAAIMGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKHGAD 138
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+ GH++IV+ LL D + D G PLHLAA+ G +E+V+ L+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-DIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRV----DVNS 173
V GDT LHL L I ++ + DVN+
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++AL+GHL+ + LL H ++ +D+ +PLHLA+ GH++IV+ LL D
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 141 -AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA G +E+V+ L+ D + G T LHL
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIG 91
Query: 161 LLSIPQIRV----DVNSLIENGFTMLQ 183
L I ++ + DVN++ G T L
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLH 118
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + +TPLH++A+ GHL+ + LL H
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NAEDDSGKTPLHLAAIKGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D + +PLHLA+ GH++IV E+LL N D G PLHLAA G +E
Sbjct: 70 GADV-NAADKMGDTPLHLAALYGHLEIV-EVLLKNGADVNATDTYGFTPLHLAADAGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 6/123 (4%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E DS K +PLHLA+ +GH++IV E+LL + AD+
Sbjct: 21 AARAGQDDEVRILMANGADVNAEDDSGK-TPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVD 170
G PLHLAA+ G +E+V+ L+ D +G T LHL + L I ++ D
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGAD 138
Query: 171 VNS 173
VN+
Sbjct: 139 VNA 141
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G+ PLHLAA++G +E+V+ L+ D GDT LHL
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ GFT L
Sbjct: 92 HLEIVEVLLKNGADVNATDTYGFTPLH 118
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L++N + + S +TPLH++A GH + K LL+ +
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADV---NASDSDGKTPLHLAAENGHKEVVKLLLSQGAD- 62
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
DS +PLHLA+ GH ++VK LLL+ D DG+ PLHLAA G EVV+
Sbjct: 63 PNAKDSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Query: 135 LISANFDSVLVKFHGDTVLHLC 156
L+S D G T L L
Sbjct: 122 LLSQGADPNTSDSDGRTPLDLA 143
Score = 58.5 bits (140), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 59 GHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRI 118
G+ D K LL + ++ DS +PLHLA+ GH ++VK LLL+ D DG+
Sbjct: 15 GNKDRVKDLLENGADVNAS-DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKT 72
Query: 119 PLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTS 159
PLHLAA G EVV+ L+S D G T LHL +
Sbjct: 73 PLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
+TPLH++A GH + K LL+ + DS +PLHLA+ GH ++VK LLL+
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVK-LLLSQGAD 128
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQ 133
+D DGR PL LA G EVV+
Sbjct: 129 PNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 68.2 bits (165), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + L TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NATDWLGHTPLHLAAKTGHLEIVEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D+ +PLHLA+ GH++IV E+LL + D +G PLHLAA G +E
Sbjct: 70 GADV-NAWDNYGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D L H+PLHLA+ GH++IV+ LL D D G PLHLAA G +E+V+ L+
Sbjct: 44 DWLGHTPLHLAAKTGHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKH 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D + G T LHL L I ++ DVN+
Sbjct: 103 GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA G +E+V+ L+ D +G T LHL +
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ GFT L
Sbjct: 92 HLEIVEVLLKHGADVNAKDYEGFTPLH 118
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 15 KLYEASLRGSVRSLNTLMQN--DPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP 72
+L EA+ G+ + L++N DP + S TPLH +A GH + K LL+ K
Sbjct: 7 RLIEAAENGNKDRVKDLLENGADP-----NASDSDGRTPLHYAAENGHKEIVKLLLS-KG 60
Query: 73 ELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV 132
DS +PLH A+ GH +IVK LL D D DGR PLH AA G E+V
Sbjct: 61 ADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIV 119
Query: 133 QELISANFDSVLVKFHGDTVLHLC 156
+ L+S D G T L L
Sbjct: 120 KLLLSKGADPNTSDSDGRTPLDLA 143
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 50/108 (46%), Gaps = 5/108 (4%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
DS +PLH A+ GH +IVK LL D D DGR PLH AA G E+V+ L+S
Sbjct: 34 DSDGRTPLHYAAENGHKEIVKLLLSKGADPN-AKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFTML 182
D G T LH + I ++ D N+ +G T L
Sbjct: 93 GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPL 140
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH +A GH + K LL+ K DS +PLH A+ GH +IVK LL D
Sbjct: 72 TPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPN 130
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQ 133
+D DGR PL LA G E+V+
Sbjct: 131 -TSDSDGRTPLDLAREHGNEEIVK 153
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
KL EA+ G + LM N + S TPLH++A +GH + + LL H ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAHDDQGS---TPLHLAAWIGHPEIVEVLLKHGADV 73
Query: 75 -AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
A++ D +PLHLA+ GH++IV+ LL D D G PLHLAA RG +E+V+
Sbjct: 74 NARDTDGW--TPLHLAADNGHLEIVEVLLKYGADVN-AQDAYGLTPLHLAADRGHLEIVE 130
Query: 134 ELISANFD 141
L+ D
Sbjct: 131 VLLKHGAD 138
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 50/99 (50%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D +PLHLA+ GH +IV E+LL + D DG PLHLAA G +E+V+ L+
Sbjct: 44 DDQGSTPLHLAAWIGHPEIV-EVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D +G T LHL L I ++ DVN+
Sbjct: 103 GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA G E+V+ L+ D G T LHL +
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ G T L
Sbjct: 92 HLEIVEVLLKYGADVNAQDAYGLTPLH 118
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.9 bits (159), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 87/169 (51%), Gaps = 16/169 (9%)
Query: 10 EDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
+D KL EA+ G + LM N + T L TPLH++A G L+ + LL
Sbjct: 4 QDLGKKLLEAAAAGQDDEVRILMANGADV-NATDDNGL--TPLHLAAANGQLEIVEVLLK 60
Query: 70 HKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
+ ++ DS +PLHLA+ +GH++IV+ LL D D+ G PLHLAA+ G++
Sbjct: 61 NGADVNAS-DSAGITPLHLAAYDGHLEIVEVLLKHGADVN-AYDRAGWTPLHLAALSGQL 118
Query: 130 EVVQELISANFDSVLVKFHGDTVLH--LCTTSYLLSIPQIRVDVNSLIE 176
E+V+ VL+K D L T++ +SI Q + D+ +++
Sbjct: 119 EIVE---------VLLKHGADVNAQDALGLTAFDISINQGQEDLAEILQ 158
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 57/116 (49%), Gaps = 12/116 (10%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+A G ++IV E+LL N +D G PLHLAA G +E+V+ L+ D
Sbjct: 41 TPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFTML-------QKDLQE 188
G T LHL S L I ++ DVN+ G T Q+DL E
Sbjct: 100 AYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQDALGLTAFDISINQGQEDLAE 155
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 5/98 (5%)
Query: 89 ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFH 148
A+A G V+ +L+AN D +G PLHLAA G++E+V+ L+ D
Sbjct: 13 AAAAGQDDEVR-ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSA 71
Query: 149 GDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFTML 182
G T LHL L I ++ DVN+ G+T L
Sbjct: 72 GITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPL 109
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + + +TPLH++A +GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NAEDTYGDTPLHLAARVGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ LD +PLHLA+ GH++IV+ LL D D G PLHLAA G +E
Sbjct: 70 GADV-NALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN-ADDTIGSTPLHLAADTGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E D+ +PLHLA+ GH++IV E+LL N D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIV-EVLLKNGADVNALDF 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVD 170
G PLHLAA RG +E+V+ L+ D G T LHL + L I ++ D
Sbjct: 79 SGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGAD 138
Query: 171 VNS 173
VN+
Sbjct: 139 VNA 141
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQN--DPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D KL EA+ G + L+ N D + T LT PLH++A+ GHL+ + LL
Sbjct: 13 DLGKKLLEAARAGQDDEVRILIANGADVNAVDNTGLT-----PLHLAAVSGHLEIVEVLL 67
Query: 69 NHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
H ++ D +PLHLA+ GH++IV+ LL D D G PLHLAA G
Sbjct: 68 KHGADV-DAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAF-DMTGSTPLHLAADEGH 125
Query: 129 VEVVQELISANFD 141
+E+V+ L+ D
Sbjct: 126 LEIVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 53/100 (53%), Gaps = 5/100 (5%)
Query: 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D+ +PLHLA+ GH++IV E+LL + AD G PLHLAAM G +E+V+ L+
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIV-EVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 138 ANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D G T LHL L I ++ DVN+
Sbjct: 102 YGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA+ G +E+V+ L+ D +G T LHL +
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ G T L
Sbjct: 92 HLEIVEVLLKYGADVNAFDMTGSTPLH 118
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 46/131 (35%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + + TPLH++A GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ +D +PL LA+ GH++IV E+LL N D +G PLHLAAM G +E
Sbjct: 70 GADV-NAVDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKNGAD 138
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 8/131 (6%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E D+ +PLHLA+ GH++IV E+LL N D
Sbjct: 21 AARAGRDDEVRILMANGADVNAE-DASGWTPLHLAAFNGHLEIV-EVLLKNGADVNAVDH 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSL 174
G PL LAA+ G +E+V+ L+ D G T LHL L I ++ L
Sbjct: 79 AGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEV------L 132
Query: 175 IENGFTMLQKD 185
++NG + +D
Sbjct: 133 LKNGADVNAQD 143
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 74/143 (51%), Gaps = 7/143 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ + L++N + + S TPLH +A GH + K L++ ++
Sbjct: 7 RLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVVQ 133
+ DS +PLH A+ GH ++VK LL +K A + A D DGR PLH AA G EVV+
Sbjct: 64 NAK-DSDGRTPLHHAAENGHKEVVK--LLISKGADVNAKDSDGRTPLHHAAENGHKEVVK 120
Query: 134 ELISANFDSVLVKFHGDTVLHLC 156
LIS D G T L L
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLA 143
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/109 (38%), Positives = 56/109 (51%), Gaps = 7/109 (6%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVVQELIS 137
DS +PLH A+ GH ++VK LL +K A + A D DGR PLH AA G EVV+ LIS
Sbjct: 34 DSDGRTPLHHAAENGHKEVVK--LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLIS 91
Query: 138 ANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV----DVNSLIENGFTML 182
D G T LH + + ++ + DVN+ +G T L
Sbjct: 92 KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPL 140
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH +A GH + K L++ ++ + DS +PLH A+ GH ++VK LL++
Sbjct: 72 TPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVK-LLISKGADV 129
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQ 133
+D DGR PL LA G EVV+
Sbjct: 130 NTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
ETPLH++A GH + K LL +K ++ AK D +PLH A+ GH +VK LLL N
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDD--QTPLHCAARIGHTNMVK-LLLENNA 104
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI 167
+A G PLH+AA G VE V L+ + G T LH+ + + ++
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Query: 168 RVD----VNSLIENGFTMLQ 183
++ N+ +NG T L
Sbjct: 165 LLERDAHPNAAGKNGLTPLH 184
Score = 61.6 bits (148), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 56/175 (32%), Positives = 83/175 (47%), Gaps = 15/175 (8%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL--NHKPE 73
L+ A+ G L+QN + K +TPLH +A +GH + K LL N P
Sbjct: 51 LHMAARAGHTEVAKYLLQNKAKVNAKAKDD---QTPLHCAARIGHTNMVKLLLENNANPN 107
Query: 74 LAKELDSLKHSPLHLASAEGHVQIVKELLLAN-KDACLVADQDGRIPLHLAAMRGRVEVV 132
LA + H+PLH+A+ EGHV+ V LL AC+ + G PLH+AA G+V V
Sbjct: 108 LAT---TAGHTPLHIAAREGHVETVLALLEKEASQACMT--KKGFTPLHVAAKYGKVRVA 162
Query: 133 QELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV----DVNSLIENGFTMLQ 183
+ L+ + +G T LH+ L I ++ + +S NG+T L
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLH 217
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 73/148 (49%), Gaps = 14/148 (9%)
Query: 50 TPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
TPLHI+A ++ ++LL + A+ + + +PLHLA+ EGH ++V LLL+ +
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGV--TPLHLAAQEGHAEMVA-LLLSKQAN 270
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYL 161
+ ++ G PLHL A G V V LI G T LH+ + +L
Sbjct: 271 GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFL 330
Query: 162 LSIPQIRVDVNSLIENGFTMLQKDLQEA 189
L Q + DVN+ + G++ L + Q+
Sbjct: 331 L---QHQADVNAKTKLGYSPLHQAAQQG 355
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/179 (29%), Positives = 78/179 (43%), Gaps = 23/179 (12%)
Query: 16 LYEASLRGSVRSLNTLMQND--PLILRKTSLTSLRETPLHISALLGHLDFTKALLN---- 69
L+ A+ G VR L++ D P K LT PLH++ +LD K LL
Sbjct: 150 LHVAAKYGKVRVAELLLERDAHPNAAGKNGLT-----PLHVAVHHNNLDIVKLLLPRGGS 204
Query: 70 -HKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR 128
H P ++PLH+A+ + V++ + LL A + Q G PLHLAA G
Sbjct: 205 PHSPAWNG------YTPLHIAAKQNQVEVARSLLQYGGSANAESVQ-GVTPLHLAAQEGH 257
Query: 129 VEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVD----VNSLIENGFTMLQ 183
E+V L+S + L G T LHL + + + + V++ G+T L
Sbjct: 258 AEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLH 316
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLA 104
T + TPLH+++ G++ K LL H+ ++ + L +SPLH A+ +GH IV LLL
Sbjct: 308 TRMGYTPLHVASHYGNIKLVKFLLQHQADVNAK-TKLGYSPLHQAAQQGHTDIVT-LLLK 365
Query: 105 NKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
N + DG PL +A G + V L
Sbjct: 366 NGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
++EA++ G SL L+ + +T+ +PLH + L GHL K LL H ++
Sbjct: 63 MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 118
Query: 76 KELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + H+PL A G V LL A + + D P+H AA RG VE V L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 176
Query: 136 IS--ANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEAI--A 191
I+ N D + HL T YL Q R V L+E+G + Q Q++ A
Sbjct: 177 IAYGGNID--------HKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 228
Query: 192 VPSTKSETKA 201
V T SE A
Sbjct: 229 VVRTASEELA 238
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 64/131 (48%), Gaps = 5/131 (3%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + + TPLH+ GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NANDWFGITPLHLVVNNGHLEIIEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVE 130
++ D +PLHLA+ GH++IV+ LL D + D G PLHLAA G +E
Sbjct: 70 AADVNAS-DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAM-DYQGYTPLHLAAEDGHLE 127
Query: 131 VVQELISANFD 141
+V+ L+ D
Sbjct: 128 IVEVLLKYGAD 138
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHL GH++I++ LL D +D+ G PLHLAA RG +E+V+ L+ D
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVN-ASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN 107
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRV----DVNS 173
+ + G T LHL L I ++ + DVN+
Sbjct: 108 AMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNA 141
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++A GHL+ + LL + ++ +D ++PLHLA+ +GH++IV+ LL D
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADV-NAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN 140
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 141 -AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHL G +E+++ L+ D G T LHL
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRG 91
Query: 161 LLSIPQIRV----DVNSLIENGFTMLQ 183
L I ++ + DVN++ G+T L
Sbjct: 92 HLEIVEVLLKYGADVNAMDYQGYTPLH 118
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 85/190 (44%), Gaps = 18/190 (9%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75
++EA++ G SL L+ + +T+ +PLH + L GHL K LL H ++
Sbjct: 7 MHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV- 62
Query: 76 KELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + H+PL A G V LL A + + D P+H AA RG VE V L
Sbjct: 63 NGVTADWHTPLFNACVSGSWDCVN--LLLQHGASVQPESDLASPIHEAARRGHVECVNSL 120
Query: 136 IS--ANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEAI--A 191
I+ N D + HL T YL Q R V L+E+G + Q Q++ A
Sbjct: 121 IAYGGNID--------HKISHLGTPLYLACENQQRACVKKLLESGADVNQGKGQDSPLHA 172
Query: 192 VPSTKSETKA 201
V T SE A
Sbjct: 173 VARTASEELA 182
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 72/146 (49%), Gaps = 4/146 (2%)
Query: 10 EDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69
ED L EA+ + ++ L++ L+ K + S T LH++A GH + + LL+
Sbjct: 42 EDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGS---TCLHLAAKKGHYEVVQYLLS 98
Query: 70 HKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129
+ D +P+ A+ HV +VK LLL+ + D + I LH AA G V
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVK-LLLSKGSDINIRDNEENICLHWAAFSGCV 157
Query: 130 EVVQELISANFDSVLVKFHGDTVLHL 155
++ + L++A D V HGD+ LH+
Sbjct: 158 DIAEILLAAKCDLHAVNIHGDSPLHI 183
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 49/108 (45%), Gaps = 14/108 (12%)
Query: 82 KHSPLHLASAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139
K SPLH A+ GHV I L+ AN D C +D R PL AA +E V+ LI A
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTC---SEDQRTPLMEAAENNHLEAVKYLIKAG 67
Query: 140 FDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFT 180
G T LHL YLLS Q+ DVN + G+T
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQM--DVNCQDDGGWT 113
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 12/95 (12%)
Query: 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSL---KHSPLHLASAEGHVQIVKELLLA 104
+ +PLH +A GH+D L+ + +D+ + +PL A+ H++ VK L+
Sbjct: 11 KRSPLHAAAEAGHVDICHMLV----QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLI-- 64
Query: 105 NKDACLV--ADQDGRIPLHLAAMRGRVEVVQELIS 137
K LV D +G LHLAA +G EVVQ L+S
Sbjct: 65 -KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLS 98
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 2/104 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TP+ + H+D K LL+ ++ D+ ++ LH A+ G V I E+LLA K
Sbjct: 113 TPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVDIA-EILLAAKCDL 170
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVL 153
+ G PLH+AA R + V +S + D L G+T L
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPL 214
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 55.1 bits (131), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 51/149 (34%), Positives = 75/149 (50%), Gaps = 8/149 (5%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L EA+ G+ L L+ PL + + + TPLH++A + + LL H ++
Sbjct: 27 ELLEAARSGNEEKLMALLT--PLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV 84
Query: 75 -AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVA-DQDGRIPLHLAAMRGRVEVV 132
AK+ L PLH A + GH ++ ELLL + AC+ A D PLH AA + RVEV
Sbjct: 85 HAKDKGGL--VPLHNACSYGHYEVT-ELLLKH-GACVNAMDLWQFTPLHEAASKNRVEVC 140
Query: 133 QELISANFDSVLVKFHGDTVLHLCTTSYL 161
L+S D LV HG + + + T L
Sbjct: 141 SLLLSHGADPTLVNCHGKSAVDMAPTPEL 169
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 63/126 (50%), Gaps = 12/126 (9%)
Query: 17 YEASLRGSVRSLN-TLMQNDPLILRKTSLTSLRE----TPLHISALLGHLDFTKALLNHK 71
+E +L +V SL+ Q L+LRK + + + TPLH++A H D + L H
Sbjct: 211 HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG 270
Query: 72 PELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131
++ LDSL + LH A+ GH+Q + LL D +++ Q AA G E
Sbjct: 271 AKM-NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQG-----FTAAQMGN-EA 323
Query: 132 VQELIS 137
VQ+++S
Sbjct: 324 VQQILS 329
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 5/94 (5%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+PLHLA+ GH++IV+ LL D + D G PLHLAA+ G +E+V+ L+ D
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAI-DIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRV----DVNS 173
V GDT LHL L I ++ + DVN+
Sbjct: 108 AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNA 141
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 52/89 (58%), Gaps = 5/89 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++AL+GHL+ + LL H ++ +D+ +PLHLA+ GH++IV+ LL D
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADV-NAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN 140
Query: 110 LVADQDGRIPLHLAAMRGR---VEVVQEL 135
D+ G+ ++ G E++Q+L
Sbjct: 141 -AQDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA G +E+V+ L+ D + G T LHL
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIG 91
Query: 161 LLSIPQIRV----DVNSLIENGFTMLQ 183
L I ++ + DVN++ G T L
Sbjct: 92 HLEIVEVLLKHGADVNAVDTWGDTPLH 118
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D+ ++PLHLA++ GH++IV E+LL N +D G PLHLAA G +E+V+ L+
Sbjct: 44 DNDGYTPLHLAASNGHLEIV-EVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH 102
Query: 139 NFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
D G T LHL L I ++ DVN+
Sbjct: 103 GADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 54/94 (57%), Gaps = 4/94 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D D L+ A+ G + + L++N + + LT + TPLH++A GHL+ + LL
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADV-NASDLTGI--TPLHLAAATGHLEIVEVLL 100
Query: 69 NHKPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
H ++ D+ H+PLHLA+ GH++IV+ LL
Sbjct: 101 KHGADV-NAYDNDGHTPLHLAAKYGHLEIVEVLL 133
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D DG PLHLAA G +E+V+ L+ D G T LHL +
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATG 91
Query: 161 LLSIPQI----RVDVNSLIENGFTMLQ 183
L I ++ DVN+ +G T L
Sbjct: 92 HLEIVEVLLKHGADVNAYDNDGHTPLH 118
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 53.5 bits (127), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/93 (39%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 50 TPLHISALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
TPLH +A GH + K LL+ ++ A+ D ++PLHLA+ GH +IVK LLLA
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDG--NTPLHLAAKNGHAEIVK-LLLAKGAD 67
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+DG P HLA G E+V+ L + D
Sbjct: 68 VNARSKDGNTPEHLAKKNGHHEIVKLLDAKGAD 100
Score = 47.0 bits (110), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
++PLH A+ GH + VK+LL D +DG PLHLAA G E+V+ L++ D
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 143 VLVKFHGDTVLHL 155
G+T HL
Sbjct: 69 NARSKDGNTPEHL 81
Score = 33.9 bits (76), Expect = 0.18, Method: Composition-based stats.
Identities = 24/71 (33%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 114 QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV---- 169
+DG PLH AA G E V++L+S D G+T LHL + I ++ +
Sbjct: 7 KDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 170 DVNSLIENGFT 180
DVN+ ++G T
Sbjct: 67 DVNARSKDGNT 77
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 4/92 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + +L TPLH++A LGHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADV---NALDEDGLTPLHLAAQLGHLEIVEVLLKY 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
++ E D+ +PLHLA+ GH++IV+ LL
Sbjct: 70 GADVNAE-DNFGITPLHLAAIRGHLEIVEVLL 100
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
LD +PLHLA+ GH++IV+ LL D D G PLHLAA+RG +E+V+ L+
Sbjct: 43 LDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN-AEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 138 ANFD 141
D
Sbjct: 102 HGAD 105
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+DG PLHLAA G +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLKHGADVNA 108
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 50 TPLHISALLGHLDFTKALLNHKPEL 74
TPLH++A+ GHL+ + LL H ++
Sbjct: 82 TPLHLAAIRGHLEIVEVLLKHGADV 106
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/92 (35%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
++ DS +PLHLA+ GH++IV+ LL
Sbjct: 70 GADVNAS-DSWGRTPLHLAATVGHLEIVEVLL 100
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLA+ GH++IV E+LL + +D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD 141
D
Sbjct: 102 YGAD 105
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA RG +E+V+ L+ D G T LHL T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAATVG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLEYGADVNA 108
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQE 134
A D +PLH+A+A GH++IV E+LL N D +G PLHLAA G +E+V+
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 135 LISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----RVDVNS 173
L+ D G T L+L L I ++ DVN+
Sbjct: 87 LLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFT 64
A +D L+ A+ G + + L++N + ++ + TPLH++A LGHL+
Sbjct: 28 ANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADV---NAVDTNGTTPLHLAASLGHLEIV 84
Query: 65 KALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
+ LL + ++ + D+ +PL+LA+ GH++IV+ LL
Sbjct: 85 EVLLKYGADVNAK-DATGITPLYLAAYWGHLEIVEVLL 121
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D GR PLH+AA G +E+V+ L+ D V +G T LHL +
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLG 79
Query: 161 LLSIPQI----RVDVNSLIENGFTML 182
L I ++ DVN+ G T L
Sbjct: 80 HLEIVEVLLKYGADVNAKDATGITPL 105
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
++ D +PLHLA+ GH++IV+ LL
Sbjct: 70 GADVNAR-DIWGRTPLHLAATVGHLEIVEVLL 100
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLA+ GH++IV E+LL + D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD 141
D
Sbjct: 102 YGAD 105
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA RG +E+V+ L+ D G T LHL T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAATVG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLEYGADVNA 108
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + ++ TPLH++A GHL+ + LL H
Sbjct: 13 DLGKKLLEATRAGQDDEVRILMANGADV---NAMDDAGVTPLHLAAKRGHLEIVEVLLKH 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELL 102
++ D +PLHLA+ GH++IV+ LL
Sbjct: 70 GADVNAS-DIWGRTPLHLAATVGHLEIVEVLL 100
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 39/64 (60%), Gaps = 1/64 (1%)
Query: 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+D +PLHLA+ GH++IV E+LL + +D GR PLHLAA G +E+V+ L+
Sbjct: 43 MDDAGVTPLHLAAKRGHLEIV-EVLLKHGADVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
Query: 138 ANFD 141
D
Sbjct: 102 YGAD 105
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D G PLHLAA RG +E+V+ L+ D G T LHL T
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAATVG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLEYGADVNA 108
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 77/165 (46%), Gaps = 19/165 (11%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
KL EA+ G + LM N + L +PLH++A GH T+ LL + +
Sbjct: 5 KLLEAARAGQDDEVRILMANGAPF----TTDWLGTSPLHLAAQYGHFSTTEVLL--RAGV 58
Query: 75 AKELDS-LKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQ 133
+++ + + +PLH+A++EGH IV E+LL + D LH A EVV+
Sbjct: 59 SRDARTKVDRTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQEVVE 117
Query: 134 ELISANFDSVLVKFHGD--TVLHLCTTSYLLSIPQIRVDVNSLIE 176
+L+K+ D T C T++ +SI D+ +++
Sbjct: 118 ---------LLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L + R + + TPLH +A + + LL
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 62
Query: 69 NHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 63 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 119
Query: 128 RVEVVQELISANFDSVLVKFHGDTVLHL 155
+ E+ + L+ D G+T L L
Sbjct: 120 KYEICKLLLQHGADPTKKNRDGNTPLDL 147
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L + R + + TPLH +A + + LL
Sbjct: 7 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 64
Query: 69 NHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 65 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 121
Query: 128 RVEVVQELISANFDSVLVKFHGDTVLHL 155
+ E+ + L+ D G+T L L
Sbjct: 122 KYEICKLLLQHGADPTKKNRDGNTPLDL 149
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
+ ++ +L EA+ G V ++ L + R + + TPLH +A + + LL
Sbjct: 9 NSEADRQLLEAAKAGDVETVKKLCTVQSVNCR--DIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 69 NHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127
H ++ AK+ L PLH A + GH ++ ELL+ + VAD PLH AA +G
Sbjct: 67 QHGADVHAKDKGGL--VPLHNACSYGHYEVA-ELLVKHGAVVNVADLWKFTPLHEAAAKG 123
Query: 128 RVEVVQELISANFDSVLVKFHGDTVLHL 155
+ E+ + L+ D G+T L L
Sbjct: 124 KYEICKLLLQHGADPTKKNRDGNTPLDL 151
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 8/112 (7%)
Query: 47 LRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLA 104
L TPLH + GHL L+ + P L +D S +HLA+ GH IV L+
Sbjct: 75 LNSTPLHWATRQGHLSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAK 131
Query: 105 NKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSVLV-KFHGDTVLH 154
+D ++ DQ+G PL AA R V+ + L++ N L K+H +T LH
Sbjct: 132 GQDVDMM-DQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALH 182
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 1/104 (0%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
T LH +A+ +D K ++ + + L +PLH A+ +GH+ +V +L+ D
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPS 103
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVL 153
L+ D +G +HLAA G +V LI+ D ++ +G T L
Sbjct: 104 LI-DGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPL 146
Score = 34.7 bits (78), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 23/148 (15%)
Query: 86 LHLASAEGHVQIVKELLLANKDACLVADQDG----RIPLHLAAMRGRVEVVQELISANFD 141
LH A+ + +VK + +K A + DQ G PLH A +G + +V +L+ D
Sbjct: 46 LHWAAINNRIDLVKYYI--SKGA--IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD 101
Query: 142 SVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDLQEAIAVPS 194
L+ G + +HL +YL++ Q DV+ + +NG T L +V
Sbjct: 102 PSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQ---DVDMMDQNGMTPLMWAAYRTHSVDP 158
Query: 195 TKSETKALPLSPNVTLHHRDEPQAQASL 222
T+ L L+ NV+++ D+ +L
Sbjct: 159 TR-----LLLTFNVSVNLGDKYHKNTAL 181
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/63 (42%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D H+PLHLA+ GH++IV E+LL N GR PLHLAA +E+V+ L+
Sbjct: 44 DYWGHTPLHLAAMLGHLEIV-EVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
Query: 139 NFD 141
D
Sbjct: 103 GAD 105
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 64/128 (50%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + L N + + TPLH++A+LGHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILTANGADV---NANDYWGHTPLHLAAMLGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ ++ + +PLHLA+ H++IV E+LL + D+ G+ ++ G
Sbjct: 70 GADVNATGNTGR-TPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L AN D G PLHLAAM G +E+V+ L+ D G T LHL +
Sbjct: 32 ILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWAD 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLKHGADVNA 108
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
+PLH++AL G D LL H A ++ + PLHLA +GH Q+VK LL +N
Sbjct: 88 SPLHVAALHGRADLIPLLLKHGAN-AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP- 145
Query: 110 LVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
D G PL A G E+V L+ G+T LH
Sbjct: 146 NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH 190
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 111 VADQDGRIPLHLAAMRGRVEVV 132
V QDG PLH+AA+ GR +++
Sbjct: 81 VTSQDGSSPLHVAALHGRADLI 102
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
SPLH A EG +V E+L+ V ++ PLHLAA G ++VQ+L+ D
Sbjct: 41 SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 99
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEAIAVPSTKSETKALP 203
V HG+ LH Y Q +V L+ NG A+ S ++ +P
Sbjct: 100 AVNEHGNVPLH-----YACFWGQDQV-AEDLVANG------------ALVSICNKYGEMP 141
Query: 204 LSPNVTLHHRDEPQAQASLRQLLKFDSDRYEKTRGNL 240
+ +A+A LR+LL+ +R EK NL
Sbjct: 142 VD-----------KAKAPLRELLR---ERAEKMGQNL 164
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 37 LILRKTSLTSLR---ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEG 93
LI+R + + +TPLH++A GH D + LL +K ++ ++ + PLH A G
Sbjct: 58 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 116
Query: 94 HVQIVKELLLANKDACLVADQDGRIPLHLA 123
Q+ ++ L+AN + ++ G +P+ A
Sbjct: 117 QDQVAED-LVANGALVSICNKYGEMPVDKA 145
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 69/157 (43%), Gaps = 33/157 (21%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
SPLH A EG +V E+L+ V ++ PLHLAA G ++VQ+L+ D
Sbjct: 36 SPLHWACREGRSAVV-EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN 94
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEAIAVPSTKSETKALP 203
V HG+ LH Y Q +V L+ NG A+ S ++ +P
Sbjct: 95 AVNEHGNVPLH-----YACFWGQDQV-AEDLVANG------------ALVSICNKYGEMP 136
Query: 204 LSPNVTLHHRDEPQAQASLRQLLKFDSDRYEKTRGNL 240
+ +A+A LR+LL+ +R EK NL
Sbjct: 137 VD-----------KAKAPLRELLR---ERAEKMGQNL 159
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%), Gaps = 5/90 (5%)
Query: 37 LILRKTSLTSLR---ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEG 93
LI+R + + +TPLH++A GH D + LL +K ++ ++ + PLH A G
Sbjct: 53 LIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWG 111
Query: 94 HVQIVKELLLANKDACLVADQDGRIPLHLA 123
Q+ ++ L+AN + ++ G +P+ A
Sbjct: 112 QDQVAED-LVANGALVSICNKYGEMPVDKA 140
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 2/87 (2%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ 114
+A G D + L+ + ++ E D + +PLHLA+ H++IV E+LL N D
Sbjct: 21 AARAGQDDEVRILMANGADVNAE-DKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 115 DGRIPLHLAAMRGRVEVVQELISANFD 141
G PLHL AM G +E+V+ L+ D
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLKHGAD 105
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+ G PLHLAAM +E+V+ L+ D + G+T LHL
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYG 91
Query: 161 LLSIPQIRV----DVNS 173
L I ++ + DVN+
Sbjct: 92 HLEIVEVLLKHGADVNA 108
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
L+ A++ + + L++N + ++ ++ ETPLH+ A+ GHL+ + LL H ++
Sbjct: 51 LHLAAMNDHLEIVEVLLKNGADV---NAIDAIGETPLHLVAMYGHLEIVEVLLKHGADV 106
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
D ++PLHLA+ H++IV E+LL + D DG PLHLAA+ G +E+V+ L+
Sbjct: 44 DRKGNTPLHLAADYDHLEIV-EVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKH 102
Query: 139 NFD 141
D
Sbjct: 103 GAD 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 8/124 (6%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
KL EA+ G + LM N + + TPLH++A HL+ + LL H ++
Sbjct: 17 KLLEAARAGQDDEVRILMANGADV---NANDRKGNTPLHLAADYDHLEIVEVLLKHGADV 73
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR---VEV 131
D+ +PLHLA+ GH++IV E+LL + D+ G+ ++ G E+
Sbjct: 74 NAH-DNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEI 131
Query: 132 VQEL 135
+Q+L
Sbjct: 132 LQKL 135
Score = 32.3 bits (72), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+ G PLHLAA +E+V+ L+ D G T LHL
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIVEVLLKHGADVNA 108
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACL 110
PLH + + + LL+ KP L + D PLH + + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 111 --VADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKF--HGDTVLHLCTTSYLLSIPQ 166
D G P H+A G +EVV+ L L K G T LHL + Q
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 167 IRVDVNSLIENGFTMLQKD------LQEAIAVPSTK 196
LIENG ++ KD L A +V S K
Sbjct: 125 F------LIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 81 LKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--- 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 138 -ANF-----DSVLVKFH-GDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQ 183
N DS FH +V +L L P ++ D+N + G T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLH 112
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACL 110
PLH + + + LL+ KP L + D PLH + + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 111 --VADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKF--HGDTVLHLCTTSYLLSIPQ 166
D G P H+A G +EVV+ L L K G T LHL + Q
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 167 IRVDVNSLIENGFTMLQKD------LQEAIAVPSTK 196
LIENG ++ KD L A +V S K
Sbjct: 125 F------LIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 81 LKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--- 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 138 -ANF-----DSVLVKFH-GDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQ 183
N DS FH +V +L L P ++ D+N + G T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLH 112
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD 115
A G L+ K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 71
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNS 173
G PLH+AA GR E+V+ L+ V +G T LH + I +
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM------ 125
Query: 174 LIENGFTMLQKDLQEAIAV 192
L+E G KD EA A+
Sbjct: 126 LLEGGANPDAKDHYEATAM 144
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLL--ANKD 107
+PLHI+A G + KALL ++ ++ +PLH A+++ +I LL AN D
Sbjct: 76 SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 134
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHL 155
A D +H AA +G ++++ L+ + + G+T LHL
Sbjct: 135 A---KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 179
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD 115
A G L+ K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNS 173
G PLH+AA GR E+V+ L+ V +G T LH + I +
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVM------ 124
Query: 174 LIENGFTMLQKDLQEAIAV 192
L+E G KD EA A+
Sbjct: 125 LLEGGANPDAKDHYEATAM 143
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 6/108 (5%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLL--ANKD 107
+PLHI+A G + KALL ++ ++ +PLH A+++ +I LL AN D
Sbjct: 75 SPLHIAASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD 133
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHL 155
A D +H AA +G ++++ L+ + + G+T LHL
Sbjct: 134 A---KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHL 178
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 63/156 (40%), Gaps = 16/156 (10%)
Query: 51 PLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACL 110
PLH + + + LL+ KP L + D PLH + + +I LL ++ L
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 111 --VADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKF--HGDTVLHLCTTSYLLSIPQ 166
D G P H+A G +EVV+ L L K G T LHL + Q
Sbjct: 65 DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124
Query: 167 IRVDVNSLIENGFTMLQKD------LQEAIAVPSTK 196
LIENG ++ KD L A +V S K
Sbjct: 125 F------LIENGASVRIKDKFNQIPLHRAASVGSLK 154
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 51/88 (57%), Gaps = 4/88 (4%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
TP HI+ +G+L+ K+L + KP+L K + + + LHLA + + V + L+ N
Sbjct: 74 TPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTCLHLAVGKKWFE-VSQFLIENGA 131
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+ + D+ +IPLH AA G +++++ L
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELL 159
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 81 LKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS--- 137
+ + PLH A E V+ELL + L DQDGRIPLH + E+ L+S
Sbjct: 1 MSNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 138 -ANF-----DSVLVKFH-GDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQ 183
N DS FH +V +L L P ++ D+N + G T L
Sbjct: 61 NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP-LKPDLNKITNQGVTCLH 112
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+PL+LA+A GH++IV E+LL N D G PLHLAA G +E+ + L+ D
Sbjct: 49 TPLYLATAHGHLEIV-EVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGAD 105
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 63/128 (49%), Gaps = 8/128 (6%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D KL EA+ G + LM N + K TPL+++ GHL+ + LL +
Sbjct: 13 DLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGL---TPLYLATAHGHLEIVEVLLKN 69
Query: 71 KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-- 128
++ +D++ +PLHLA+ GH++I E+LL + D+ G+ ++ G
Sbjct: 70 GADV-NAVDAIGFTPLHLAAFIGHLEIA-EVLLKHGADVNAQDKFGKTAFDISIGNGNED 127
Query: 129 -VEVVQEL 135
E++Q+L
Sbjct: 128 LAEILQKL 135
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
DE LY A+ G + + L++N + ++ ++ TPLH++A +GHL+ + LL
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADV---NAVDAIGFTPLHLAAFIGHLEIAEVLL 100
Query: 69 NHKPEL 74
H ++
Sbjct: 101 KHGADV 106
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY 160
+L+AN D+ G PL+LA G +E+V+ L+ D V G T LHL
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIG 91
Query: 161 LLSIPQI----RVDVNS 173
L I ++ DVN+
Sbjct: 92 HLEIAEVLLKHGADVNA 108
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 61/139 (43%), Gaps = 11/139 (7%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD 115
A G LD K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNS 173
G PLH+AA GR E+V+ L+ V +G T LH + I +
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM------ 124
Query: 174 LIENGFTMLQKDLQEAIAV 192
L+E G KD +A A+
Sbjct: 125 LLEGGANPDAKDHYDATAM 143
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ D+ + +H A+A+G++++V +LL K
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV-HILLFYKA 163
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ + D +G PLHLA RVE + L++
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D+DS L+ A G + L+Q L + +PLHI+A G + KALL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 69 NHKPELAKELDSLKHSPLHLASAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMR 126
K ++ +PLH A+++ +I LL AN DA D +H AA +
Sbjct: 94 V-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAK 149
Query: 127 GRVEVVQELISANFDSVLVKFHGDTVLHL 155
G +++V L+ + + G+T LHL
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHL 178
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
+P+H +A G LD K L+ H ++ LDS P+HLA EGH +V LA +
Sbjct: 78 SPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVS--FLAPESDL 134
Query: 110 LVADQDGRIPLHLAAMRG 127
D G PL LA RG
Sbjct: 135 HHRDASGLTPLELARQRG 152
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
+P+H +A G LD K L+ H ++ LDS P+HLA EGH +V LA +
Sbjct: 76 SPVHDAARTGFLDTLKVLVEHGADV-NALDSTGSLPIHLAIREGHSSVVS--FLAPESDL 132
Query: 110 LVADQDGRIPLHLAAMRG 127
D G PL LA RG
Sbjct: 133 HHRDASGLTPLELARQRG 150
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 2/89 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
ET LHI+++ G + + LL + + + D +PLH A GH+++V ELLL +K
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVK-DHAGWTPLHEACNHGHLKVV-ELLLQHKAL 68
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS 137
PLH AA G V++V+ L+S
Sbjct: 69 VNTTGYQNDSPLHDAAKNGHVDIVKLLLS 97
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 16 LYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
L+EA G ++ + L+Q+ L+ + ++PLH +A GH+D K LL++
Sbjct: 47 LHEACNHGHLKVVELLLQHKALV---NTTGYQNDSPLHDAAKNGHVDIVKLLLSY 98
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 46 SLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLL 103
+L++TPLH++ + + +ALL PEL D ++PLHLA +G + V L
Sbjct: 43 NLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQ 99
Query: 104 ANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SVLVKFHGDTVLHLCT 157
+ L + +G LHLA++ G + +V+ L+S D + +G T LHL
Sbjct: 100 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 159
Query: 158 -------TSYLLSIPQIRVDVNSLIENGFTMLQ 183
S LL + DVN + G++ Q
Sbjct: 160 DLQNPDLVSLLL---KCGADVNRVTYQGYSPYQ 189
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 71/153 (46%), Gaps = 21/153 (13%)
Query: 46 SLRETPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLL 103
+L++TPLH++ + + +ALL PEL D ++PLHLA +G + V L
Sbjct: 40 NLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVLTQ 96
Query: 104 ANKDACL-----VADQDGRIPLHLAAMRGRVEVVQELISANFD-SVLVKFHGDTVLHLCT 157
+ L + +G LHLA++ G + +V+ L+S D + +G T LHL
Sbjct: 97 SCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 156
Query: 158 -------TSYLLSIPQIRVDVNSLIENGFTMLQ 183
S LL + DVN + G++ Q
Sbjct: 157 DLQNPDLVSLLL---KCGADVNRVTYQGYSPYQ 186
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV----QE 134
++L+ +PLHLA +I + LL A D L D G PLHLA +G + V Q
Sbjct: 39 NNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQS 97
Query: 135 LISANFDSVL--VKFHGDTVLHLCTTSYLLSIPQIRV----DVNS 173
+ + S+L ++G T LHL + L I ++ V DVN+
Sbjct: 98 CTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNA 142
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 11/139 (7%)
Query: 56 ALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD 115
A G LD K + LA D + LH A + GH +IV+ LL + V D+D
Sbjct: 14 AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL---QLGVPVNDKD 70
Query: 116 --GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNS 173
G PLH+AA G E+V+ L+ V +G T LH + I +
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVM------ 124
Query: 174 LIENGFTMLQKDLQEAIAV 192
L+E G KD +A A+
Sbjct: 125 LLEGGANPDAKDHYDATAM 143
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 47/90 (52%), Gaps = 6/90 (6%)
Query: 50 TPLHISALLGHLDFTKALLNH--KPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
TPLH +A + LL P+ D+ + +H A+A+G++++V +LL K
Sbjct: 108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDA---TAMHRAAAKGNLKMV-HILLFYKA 163
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ + D +G PLHLA RVE + L++
Sbjct: 164 STNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D+DS L+ A G + L+Q L + +PLHI+A G + KALL
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 69 NHKPELAKELDSLKHSPLHLASAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMR 126
K ++ +PLH A+++ +I LL AN DA D +H AA +
Sbjct: 94 V-KGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA---KDHYDATAMHRAAAK 149
Query: 127 GRVEVVQELISANFDSVLVKFHGDTVLHL 155
G +++V L+ + + G+T LHL
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHL 178
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+ LH+A+A+G+ +++K L+ A D + D DG PLH AA G+ E + L+ D
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVN-IKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259
Query: 144 LVKFHGDTVLHLCTTSYLLSIPQIRVDVNSL 174
V G T + L + +++ N L
Sbjct: 260 AVNKVGQTAFDVADEDILGYLEELQKKQNLL 290
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSV 143
+ LH A + +V +VK L+ N D +G IPLH AA G +++ + LIS
Sbjct: 75 TALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVG 133
Query: 144 LVKFHGDTVLHL 155
V GDT L +
Sbjct: 134 AVNSEGDTPLDI 145
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 32/171 (18%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH 70
D L++A + +V + L++N I + + + PLH +A G+LD + L++
Sbjct: 72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI---PLHAAASCGYLDIAEYLISQ 128
Query: 71 KPELAKELDSLKHSPLHLASA---------EGHVQIVKELLLANKDACLVADQDGR---- 117
+ ++S +PL +A E + Q V ++ A K+ + +D R
Sbjct: 129 GAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGV-DIEAARKEEERIMLRDARQWLN 186
Query: 118 --------------IPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
LH+AA +G EV++ LI A +D + + G T LH
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH 237
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH A+ Q V ++LL N+
Sbjct: 23 ETALHLAARYSRSDAAKRLLEASAD-AXIQDNMGRTPLH-AAVSADAQGVFQILLRNRAT 80
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
L A DG PL LAA ++++LI+++ D V G + LH
Sbjct: 81 DLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALH 127
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQI----- 167
D+ G LHLAA R + + L+ A+ D+ + G T LH ++ + QI
Sbjct: 19 DRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVFQILLRNR 78
Query: 168 RVDVNSLIENGFTML 182
D+++ + +G T L
Sbjct: 79 ATDLDARMHDGTTPL 93
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH A+ Q V ++L+ N+
Sbjct: 59 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 116
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
L A DG PL LAA ++++LI+++ D V G + LH
Sbjct: 117 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 163
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV--- 169
D+ G LHLAA R + + L+ A+ D+ + G T LH ++ + QI +
Sbjct: 55 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 114
Query: 170 --DVNSLIENGFTML 182
D+++ + +G T L
Sbjct: 115 ATDLDARMHDGTTPL 129
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH A+ Q V ++L+ N+
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 115
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
L A DG PL LAA ++++LI+++ D V G + LH
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV--- 169
D+ G LHLAA R + + L+ A+ D+ + G T LH ++ + QI +
Sbjct: 54 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 170 --DVNSLIENGFTML 182
D+++ + +G T L
Sbjct: 114 ATDLDARMHDGTTPL 128
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 20/128 (15%)
Query: 46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK----HSPLHLASAEGHVQIVKEL 101
++ ET LHI+AL +L+ L+ PEL E + + + LH+A +V +V+ L
Sbjct: 35 AMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRAL 94
Query: 102 LLANKDACLVADQDGRI--------------PLHLAAMRGRVEVVQELISANFDSVLVKF 147
L + A + A G + PL AA G E+V+ LI D
Sbjct: 95 L--ARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 148 HGDTVLHL 155
G+TVLH+
Sbjct: 153 LGNTVLHI 160
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 9/68 (13%)
Query: 75 AKELDSLKH---SPLHLASAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR 128
A DS K+ + LH A+ + IVK L+ +NKD D+DG+ P+ LAA GR
Sbjct: 269 AARKDSEKYKGRTALHYAAQVSNXPIVKYLVGEKGSNKDK---QDEDGKTPIXLAAQEGR 325
Query: 129 VEVVQELI 136
+EVV LI
Sbjct: 326 IEVVXYLI 333
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
ET LH++A D K LL + A D++ +PLH A+ Q V ++L+ N+
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRAT 83
Query: 109 CLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
L A DG PL LAA ++++LI+++ D V G + LH
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 130
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV--- 169
D+ G LHLAA R + + L+ A+ D+ + G T LH ++ + QI +
Sbjct: 22 DRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 81
Query: 170 --DVNSLIENGFTML 182
D+++ + +G T L
Sbjct: 82 ATDLDARMHDGTTPL 96
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.7 bits (86), Expect = 0.011, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+L+AN D+DG PLHLAA G +E+V+ L+ A D
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Score = 33.9 bits (76), Expect = 0.17, Method: Composition-based stats.
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 3/54 (5%)
Query: 55 SALLGHLDFTKALLNHKPEL-AKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
+A G D + L+ + ++ AK+ D ++PLHLA+ EGH++IV+ LL A D
Sbjct: 9 AARAGQDDEVRILMANGADVNAKDKDG--YTPLHLAAREGHLEIVEVLLKAGAD 60
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 71 KPELAKEL----------DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D ++ +H A+ G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELISANFDSVLVKFH-GDTVLHLC 156
HLAA G + VV+ L+ +V + H GDT L
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
+ PLH +A G+L + + L+++ + LD + L+ A GH IV+ L
Sbjct: 74 DNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS 137
++ G LH AA +G ++VQ L++
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLA 161
Score = 32.0 bits (71), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 4/98 (4%)
Query: 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKA 66
E E + L+EA+ RG++ L + N + L T L+ + GH D +
Sbjct: 68 EQAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEX 124
Query: 67 LLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLA 104
L + + L + LH A+ +G+ IV +LLLA
Sbjct: 125 LFTQPNIELNQQNKLGDTALHAAAWKGYADIV-QLLLA 161
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 12/97 (12%)
Query: 71 KPELAKEL----------DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H A+ G + + + LL N+ + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTL-QTLLENQADVNIEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELISANFDSVLVKFH-GDTVLHLC 156
HLAA G + VV+ L+ +V + H GDT L
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 71 KPELAKEL----------DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H A+ G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELISANFDSVLVKFH-GDTVLHLC 156
HLAA G + VV+ L+ +V + H GDT L
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 8/118 (6%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELD---SLKHSPLHLASAEGHVQIVKELLLAN 105
+TPLHI+ + G+L L+N + +ELD +L+ +PLHLA +V+ L+ A
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 106 KDACLVADQDGRIPLHLAAMRGRVEVVQELISA----NFDSVLVKFHGDTVLHLCTTS 159
+ D+ G+ HLA ++ L+ + D + G T LH+ +
Sbjct: 70 ASP-MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNT 126
Score = 31.2 bits (69), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 25/128 (19%)
Query: 74 LAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGR----------IPLHLA 123
+A D +PLH+A +G++ V L+ + Q GR PLHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVN-------LFQQGGRELDIYNNLRQTPLHLA 53
Query: 124 AMRGRVEVVQELISANFDSVLVKFHGDTVLHL--------CTTSYLLSIPQIRVDVNSLI 175
+ VV+ L++A + + HG T HL C + L S +D+ +
Sbjct: 54 VITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN 113
Query: 176 ENGFTMLQ 183
+G T L
Sbjct: 114 YDGLTALH 121
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSI 164
G LH A+ RG + +V+ L+ + DS L H DT L + + ++ I
Sbjct: 183 GSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDI 231
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
T LH++A D K LL + A D++ +PLH A+ Q V ++L+ N+
Sbjct: 59 TALHLAAAYSRSDAAKRLLEASAD-ANIQDNMGRTPLH-AAVSADAQGVFQILIRNRATD 116
Query: 110 LVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLH 154
L A DG PL LAA ++++LI+++ D V G + LH
Sbjct: 117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALH 162
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 113 DQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV--- 169
D+ G LHLAA R + + L+ A+ D+ + G T LH ++ + QI +
Sbjct: 54 DRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNR 113
Query: 170 --DVNSLIENGFTML 182
D+++ + +G T L
Sbjct: 114 ATDLDARMHDGTTPL 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 71 KPELAKEL----------DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H A+ G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELISANFDSVLVKFH-GDTVLHLC 156
HLAA G + VV+ L+ +V + H GDT L
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 36.2 bits (82), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 12/97 (12%)
Query: 71 KPELAKEL----------DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120
PE+A+ L D + +H A+ G + ++ LL D + D +G +PL
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPL 107
Query: 121 HLAAMRGRVEVVQELISANFDSVLVKFH-GDTVLHLC 156
HLAA G + VV+ L+ +V + H GDT L
Sbjct: 108 HLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLA 144
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+L+AN D++G PLHLAA G +EVV+ L+ A D
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 82
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 37 LILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQ 96
L+ R + + S L +A G D + L+ + ++A + D +PLHLA+ GH++
Sbjct: 13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLE 71
Query: 97 IVKELLLANKD 107
+VK LL A D
Sbjct: 72 VVKLLLEAGAD 82
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D KL EA+ G + LM N + K S TPLH++A GHL+ K LL
Sbjct: 23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS---TPLHLAARNGHLEVVKLLL 77
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 25/41 (60%)
Query: 101 LLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141
+L+AN D++G PLHLAA G +EVV+ L+ A D
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALL 68
D KL EA+ G + LM N + K S TPLH++A GHL+ K LL
Sbjct: 5 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGS---TPLHLAARNGHLEVVKLLL 59
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 55 SALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
+A G D + L+ + ++A + D +PLHLA+ GH+++VK LL A D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEAGAD 64
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLV 111
+H A G LD K L L + D +PL ASA G ++ V+ LL D ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVL 153
A ++ L LA+ G ++V L+ + D + ++G T L
Sbjct: 66 A-KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 86 LHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLV 145
+H +A+G + +KE L + D+ G PL A+ G +E V+ L+ D ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 146 KFHGDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFTML 182
++ L L +T I + VD+N NG T L
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Query: 52 LHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLV 111
+H A G LD K L L + D +PL ASA G ++ V+ LL D ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVL 153
A ++ L LA+ G ++V L+ + D + ++G T L
Sbjct: 66 A-KERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
Score = 32.0 bits (71), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 86 LHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLV 145
+H +A+G + +KE L + D+ G PL A+ G +E V+ L+ D ++
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHIL 65
Query: 146 KFHGDTVLHLCTTSYLLSIPQI----RVDVNSLIENGFTML 182
++ L L +T I + VD+N NG T L
Sbjct: 66 AKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPL 106
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 86 LHLASAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
LH A GH +IVK L+ N +A AD DG PLH AA V+V + L+ +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 49/112 (43%), Gaps = 7/112 (6%)
Query: 81 LKHSPLHL---ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+K +PL L +S EG +V+ ++ D L D+ G LH A G E+V+ L+
Sbjct: 33 VKFNPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFLVQ 91
Query: 138 ANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEA 189
+ G T LH + + + + V+ + + F M D+Q A
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---FAMTYSDMQTA 140
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Query: 86 LHLASAEGHVQIVKELLL--ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138
LH A GH +IVK L+ N +A AD DG PLH AA V+V + L+ +
Sbjct: 74 LHNAVCAGHTEIVKFLVQFGVNVNA---ADSDGWTPLHCAASCNNVQVCKFLVES 125
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 9/114 (7%)
Query: 81 LKHSPLHLA-----SAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135
+K +PL LA S EG +V+ ++ D L D+ G LH A G E+V+ L
Sbjct: 31 VKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDE-GITALHNAVCAGHTEIVKFL 89
Query: 136 ISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSLIENGFTMLQKDLQEA 189
+ + G T LH + + + + V+ + + F M D+Q A
Sbjct: 90 VQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAV---FAMTYSDMQTA 140
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 16/149 (10%)
Query: 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKA 66
E++EDST ++ + L LN M KT ET LH++A D K
Sbjct: 23 ENNEDSTAQVI-SDLLAQGAELNATMD-------KTG-----ETSLHLAARFARADAAKR 69
Query: 67 LLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAM 125
LL+ + A D+ +PLH A A + + + +LL N+ L A DG PL LAA
Sbjct: 70 LLDAGAD-ANSQDNTGRTPLHAAVAADAMGVFQ-ILLRNRATNLNARMHDGTTPLILAAR 127
Query: 126 RGRVEVVQELISANFDSVLVKFHGDTVLH 154
+V++LI+A+ D G T LH
Sbjct: 128 LAIEGMVEDLITADADINAADNSGKTALH 156
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
H+PLH+A ++V+ L A D GR PLHLA V++ L+ A D
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 143 VLVKFHGDTVL 153
+ G T L
Sbjct: 219 TARMYGGRTPL 229
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHL 155
G+ LHLAA+ G V++L +A ++ + G T LHL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++ + + + L + +L K + +PLHLA E V ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA-VEAQAASVLELLLKAGADP 218
Query: 110 LVADQDGRIPLHLAAMR 126
GR PL A +R
Sbjct: 219 TARMYGGRTPLGSALLR 235
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%)
Query: 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
H+PLH+A ++V+ L A D GR PLHLA V++ L+ A D
Sbjct: 159 HTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADP 218
Query: 143 VLVKFHGDTVL 153
+ G T L
Sbjct: 219 TARMYGGRTPL 229
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 116 GRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHL 155
G+ LHLAA+ G V++L +A ++ + G T LHL
Sbjct: 45 GQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHL 84
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDAC 109
TPLH++ + + + L + +L K + +PLHLA E V ELLL
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLA-VEAQAASVLELLLKAGADP 218
Query: 110 LVADQDGRIPLHLAAMR 126
GR PL A +R
Sbjct: 219 TARMYGGRTPLGSALLR 235
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.0 bits (71), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 4/86 (4%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELA-KELDSLKHSPLHLASAEGHVQIVKELLLANKD 107
+TPL S + G+ + + LL H + + L+ +PL +AS G +IVK+LL D
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEG--ETPLIVASKYGRSEIVKKLLELGAD 159
Query: 108 ACLVADQDGRIPLHLAAMRGRVEVVQ 133
D G A + GR EV++
Sbjct: 160 IS-ARDLTGLTAEASARIFGRQEVIK 184
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + + G LL
Sbjct: 5 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP 61
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV 132
+ D+ SP+H A+ G + +K L+ D V D G +P+HLA G VV
Sbjct: 62 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVV 117
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 49 ETPLHISALLGHLDFTKALLN--HKPELAKELDSLKHSPLHL------ASAEGH---VQI 97
E PL ++A D LL H+P + DSL ++ LH S E + +
Sbjct: 150 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 209
Query: 98 VKELLLANKDAC------LVADQDGRIPLHLAAMRGRVEVVQELISANF 140
LL C +++ G PL LAA G++E+ + ++ F
Sbjct: 210 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 258
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 5/118 (4%)
Query: 15 KLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL 74
+L A+ RG V+ + L+ + ++ +L +T L + + G LL
Sbjct: 11 RLSGAAARGDVQEVRRLLHRE--LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP 67
Query: 75 AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV 132
+ D+ SP+H A+ G + +K L+ D V D G +P+HLA G VV
Sbjct: 68 NVQ-DTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGHTAVV 123
>pdb|1K24|A Chain A, Crystal Structure Of The Opca Outer Membrane
AdhesinINVASIN FROM Neisseria Meningitidis
pdb|2VDF|A Chain A, Structure Of The Opca Adhesion From Neisseria Meningitidis
Determined By Crystallization From The Cubic Mesophase
Length = 253
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 120 LHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRVDVNSL--IEN 177
L + + ++ + + ++ S L K H D + L Y+ +++ D+NS +
Sbjct: 114 LGFESSKDSIKTTKHTLHSSRQSWLAKVHADLLSQLGNGWYINPWSEVKFDLNSRYKLNT 173
Query: 178 GFTMLQKDLQE 188
G T L+KD+ +
Sbjct: 174 GVTNLKKDINQ 184
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 29.6 bits (65), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 45/109 (41%), Gaps = 17/109 (15%)
Query: 49 ETPLHISALLGHLDFTKALLN--HKPELAKELDSLKHSPLHL------ASAEGH---VQI 97
E PL ++A D LL H+P + DSL ++ LH S E + +
Sbjct: 137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHM 196
Query: 98 VKELLLANKDAC------LVADQDGRIPLHLAAMRGRVEVVQELISANF 140
LL C +++ G PL LAA G++E+ + ++ F
Sbjct: 197 YDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREF 245
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 29.6 bits (65), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 7/63 (11%)
Query: 112 ADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLC-------TTSYLLSI 164
+D + +H+AA +G+ + V+ LI + G T LHL T YL S+
Sbjct: 16 SDDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV 75
Query: 165 PQI 167
++
Sbjct: 76 GEV 78
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 25/167 (14%)
Query: 50 TPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS-----AEGHVQIVKELL-L 103
T LH S + + LL+ + + +SP+ L + + ++ V +L L
Sbjct: 113 TALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRL 172
Query: 104 ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSY--- 160
N +A A Q G+ L LA GRV+VV+ L++ D + G T L +C +
Sbjct: 173 GNINA--KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL-MCACEHGHK 229
Query: 161 -----LLSIPQIRVDVNSLIENGFTMLQKDLQEAIAVPSTKSETKAL 202
LL++P D++ +G T L +A+ + +SE ++
Sbjct: 230 EIAGLLLAVPS--CDISLTDRDGSTALM------VALDAGQSEIASM 268
Score = 28.5 bits (62), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 49 ETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDA 108
+T L ++ G +D KALL + ++ + D + L A GH +I LL
Sbjct: 184 QTALMLAVSHGRVDVVKALLACEADVNVQDDD-GSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 109 CLVADQDGRIPLHLAAMRGRVEVVQELIS 137
+ D+DG L +A G+ E+ L S
Sbjct: 243 ISLTDRDGSTALMVALDAGQSEIASMLYS 271
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 59 GHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRI 118
G LD K + ++ + L+ + PLH A+ G ++I++ LLL D D+
Sbjct: 13 GDLDEVKDYVAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADIN-APDKHHIT 70
Query: 119 PLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVL 153
PL A G V V+ L+S D + G T L
Sbjct: 71 PLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAL 105
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
Query: 59 GHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRI 118
G LD K + ++ + L+ + PLH A+ G ++I++ LLL D D+
Sbjct: 18 GDLDEVKDYVAKGEDVNRTLEGGR-KPLHYAADCGQLEILEFLLLKGADIN-APDKHHIT 75
Query: 119 PLHLAAMRGRVEVVQELISANFDSVL 144
PL A G V V+ L+S D +
Sbjct: 76 PLLSAVYEGHVSCVKLLLSKGADKTV 101
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS 142
HS + A A+ +V++V LL A L+ ++ PLH AA ++V+ L+ + D
Sbjct: 32 HSASYYAIADNNVRLVCTLLNAGALKNLLENE---FPLHQAATLEDTKIVKILLFSGLDD 88
Query: 143 VLVKFHGDTVLHLCTTS 159
G+T L+ S
Sbjct: 89 SQFDDKGNTALYYAVDS 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,814,260
Number of Sequences: 62578
Number of extensions: 420514
Number of successful extensions: 1538
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 964
Number of HSP's gapped (non-prelim): 281
length of query: 387
length of database: 14,973,337
effective HSP length: 101
effective length of query: 286
effective length of database: 8,652,959
effective search space: 2474746274
effective search space used: 2474746274
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)