Query 040055
Match_columns 387
No_of_seqs 400 out of 3714
Neff 9.3
Searched_HMMs 29240
Date Mon Mar 25 06:59:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040055.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040055hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 3.4E-31 1.2E-35 225.4 18.2 147 14-165 6-159 (169)
2 1yyh_A HN1;, notch 1, ankyrin 100.0 4.9E-32 1.7E-36 245.6 13.5 177 3-185 1-197 (253)
3 1oy3_D Transcription factor in 100.0 1.6E-31 5.6E-36 245.0 16.7 177 5-185 2-232 (282)
4 1oy3_D Transcription factor in 100.0 3.3E-31 1.1E-35 243.0 17.4 173 5-184 38-264 (282)
5 2xai_A ASB-9, ankyrin repeat a 100.0 7.1E-31 2.4E-35 239.2 19.2 171 3-183 27-204 (261)
6 3b7b_A Euchromatic histone-lys 100.0 1.7E-30 5.8E-35 232.5 21.2 176 3-185 2-184 (237)
7 2f8y_A Notch homolog 1, transl 100.0 1.7E-30 6E-35 230.2 20.4 177 3-186 15-199 (223)
8 3aji_A 26S proteasome non-ATPa 100.0 9.1E-31 3.1E-35 233.4 18.6 168 8-183 36-210 (231)
9 1yyh_A HN1;, notch 1, ankyrin 100.0 6.7E-31 2.3E-35 238.1 17.7 172 8-186 53-231 (253)
10 2dzn_A Probable 26S proteasome 100.0 1.6E-30 5.6E-35 231.1 19.5 171 8-183 32-213 (228)
11 1k1a_A B-cell lymphoma 3-encod 100.0 2E-30 6.7E-35 232.4 20.0 212 5-226 2-236 (241)
12 1k1a_A B-cell lymphoma 3-encod 100.0 2.4E-30 8.4E-35 231.8 20.4 174 2-183 36-221 (241)
13 3b7b_A Euchromatic histone-lys 100.0 2.4E-30 8.1E-35 231.6 19.7 176 2-184 34-216 (237)
14 2rfa_A Transient receptor pote 100.0 5.1E-30 1.8E-34 228.8 19.0 170 11-187 2-206 (232)
15 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-30 4E-35 233.8 14.1 174 6-183 2-189 (236)
16 4b93_B Ankyrin repeat domain-c 100.0 1.1E-30 3.9E-35 239.1 14.3 173 5-185 45-225 (269)
17 4b93_B Ankyrin repeat domain-c 100.0 1.7E-30 5.7E-35 238.0 15.2 151 2-157 76-226 (269)
18 3d9h_A CDNA FLJ77766, highly s 100.0 5.9E-30 2E-34 236.2 18.9 171 4-184 51-228 (285)
19 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-29 3.9E-34 239.7 20.2 177 2-185 48-287 (351)
20 1s70_B 130 kDa myosin-binding 100.0 3.9E-30 1.3E-34 238.3 16.2 167 9-183 37-270 (299)
21 1ikn_D Protein (I-kappa-B-alph 100.0 1E-29 3.5E-34 227.6 17.4 174 3-183 36-224 (236)
22 3hra_A Ankyrin repeat family p 100.0 2.2E-29 7.4E-34 219.5 18.6 172 10-187 3-187 (201)
23 3ljn_A Hypothetical protein; a 100.0 4.1E-29 1.4E-33 238.3 20.6 171 3-183 44-249 (364)
24 2xai_A ASB-9, ankyrin repeat a 100.0 2.7E-29 9.2E-34 228.7 18.4 165 11-185 2-173 (261)
25 3d9h_A CDNA FLJ77766, highly s 100.0 4.6E-29 1.6E-33 230.2 19.6 173 2-184 82-261 (285)
26 3v30_A DNA-binding protein rfx 100.0 2.4E-29 8.4E-34 214.0 16.3 163 12-181 2-171 (172)
27 2dzn_A Probable 26S proteasome 100.0 5.2E-29 1.8E-33 221.4 18.9 170 12-186 2-182 (228)
28 3aji_A 26S proteasome non-ATPa 100.0 5.8E-29 2E-33 221.6 18.7 170 9-185 3-179 (231)
29 2rfm_A Putative ankyrin repeat 100.0 2.1E-29 7E-34 218.5 15.2 149 5-158 28-176 (192)
30 3kea_A K1L; tropism, ANK repea 100.0 1.4E-29 4.8E-34 233.8 14.7 171 4-185 23-202 (285)
31 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-28 3.7E-33 226.0 19.3 172 4-183 30-224 (285)
32 4gpm_A Engineered protein OR26 100.0 8.2E-29 2.8E-33 210.7 16.7 138 2-144 27-164 (169)
33 2fo1_E LIN-12 protein; beta-ba 100.0 6.5E-29 2.2E-33 238.1 17.8 178 2-186 156-354 (373)
34 3ljn_A Hypothetical protein; a 100.0 2.9E-29 1E-33 239.3 14.6 173 2-184 10-217 (364)
35 1n11_A Ankyrin; clathrin, BAND 100.0 7.7E-29 2.6E-33 242.1 17.8 176 2-185 4-186 (437)
36 2etb_A Transient receptor pote 100.0 3.5E-29 1.2E-33 227.0 13.6 171 12-186 2-229 (256)
37 1wdy_A 2-5A-dependent ribonucl 100.0 4.1E-28 1.4E-32 222.1 20.3 177 2-186 62-261 (285)
38 2rfa_A Transient receptor pote 100.0 2.3E-28 8E-33 218.0 18.1 162 2-165 27-220 (232)
39 3twr_A Tankyrase-2; ankyrin re 100.0 1.3E-28 4.6E-33 208.0 15.5 146 8-157 4-149 (165)
40 1n11_A Ankyrin; clathrin, BAND 100.0 2.6E-28 8.8E-33 238.4 19.8 174 2-183 169-349 (437)
41 3v31_A Ankyrin repeat family A 100.0 2.3E-28 7.7E-33 207.0 16.7 142 11-157 2-143 (167)
42 3hra_A Ankyrin repeat family p 100.0 3E-28 1E-32 212.3 17.9 153 3-159 30-188 (201)
43 3f6q_A Integrin-linked protein 100.0 2.8E-28 9.4E-33 209.1 17.0 161 10-177 3-170 (179)
44 2y1l_E Darpin-8.4; hydrolase-i 100.0 4.3E-28 1.5E-32 206.0 17.6 146 8-158 10-155 (169)
45 3eu9_A Huntingtin-interacting 100.0 3.7E-28 1.3E-32 216.9 17.6 174 5-185 2-184 (240)
46 2pnn_A Transient receptor pote 100.0 5.6E-29 1.9E-33 227.9 11.6 180 3-186 4-241 (273)
47 1ihb_A P18-INK4C(INK6), cyclin 100.0 3.4E-28 1.2E-32 204.7 15.3 142 10-157 3-145 (162)
48 3eu9_A Huntingtin-interacting 100.0 6.7E-28 2.3E-32 215.3 17.5 178 2-186 32-218 (240)
49 2vge_A RELA-associated inhibit 100.0 3.1E-29 1E-33 224.1 8.5 174 6-185 15-195 (229)
50 2etb_A Transient receptor pote 100.0 1.2E-28 4E-33 223.5 12.0 162 2-165 29-244 (256)
51 1awc_B Protein (GA binding pro 100.0 8.9E-28 3E-32 200.5 16.5 143 11-159 1-143 (153)
52 2f8y_A Notch homolog 1, transl 100.0 1.6E-27 5.5E-32 211.1 18.8 160 2-165 48-214 (223)
53 2fo1_E LIN-12 protein; beta-ba 100.0 2E-28 6.8E-33 234.7 11.9 176 3-185 115-320 (373)
54 3jxi_A Vanilloid receptor-rela 100.0 2.6E-28 9E-33 221.6 11.3 174 9-186 2-233 (260)
55 1sw6_A Regulatory protein SWI6 100.0 4.5E-28 1.5E-32 228.1 12.8 168 2-185 120-323 (327)
56 4hbd_A KN motif and ankyrin re 99.9 9.2E-28 3.1E-32 220.6 14.4 148 5-157 104-258 (276)
57 2pnn_A Transient receptor pote 99.9 7.2E-28 2.5E-32 220.5 12.7 170 7-181 49-270 (273)
58 3utm_A Tankyrase-1; tankyrase, 99.9 2E-27 6.9E-32 224.3 15.8 140 7-150 19-158 (351)
59 1s70_B 130 kDa myosin-binding 99.9 4.6E-27 1.6E-31 217.5 17.5 110 45-156 37-146 (299)
60 1bi7_B P16INK4A, MTS1, multipl 99.9 8.5E-28 2.9E-32 201.4 11.0 150 1-156 1-151 (156)
61 1bd8_A P19INK4D CDK4/6 inhibit 99.9 5.1E-27 1.8E-31 196.2 15.6 142 11-158 1-142 (156)
62 3kea_A K1L; tropism, ANK repea 99.9 1.5E-27 5E-32 220.2 13.3 165 3-178 55-228 (285)
63 3jxi_A Vanilloid receptor-rela 99.9 1.2E-27 4E-32 217.2 10.5 155 9-165 43-248 (260)
64 1d9s_A Cyclin-dependent kinase 99.9 4.3E-27 1.5E-31 192.5 11.9 134 2-141 2-136 (136)
65 4g8k_A 2-5A-dependent ribonucl 99.9 3.7E-26 1.3E-30 215.4 19.9 216 9-231 22-298 (337)
66 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.2E-27 7.4E-32 213.3 10.3 165 9-182 2-176 (239)
67 4hbd_A KN motif and ankyrin re 99.9 6.9E-27 2.4E-31 214.7 11.0 170 12-187 76-259 (276)
68 3v30_A DNA-binding protein rfx 99.9 3.2E-26 1.1E-30 194.7 13.6 143 5-152 29-171 (172)
69 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.1E-25 3.7E-30 189.3 14.7 135 2-141 28-162 (162)
70 4g8k_A 2-5A-dependent ribonucl 99.9 6.7E-25 2.3E-29 206.9 17.6 133 47-183 24-207 (337)
71 2rfm_A Putative ankyrin repeat 99.9 2.2E-25 7.7E-30 193.0 13.2 140 42-186 29-175 (192)
72 2y1l_E Darpin-8.4; hydrolase-i 99.9 1E-24 3.5E-29 185.0 16.7 133 2-139 37-169 (169)
73 3v31_A Ankyrin repeat family A 99.9 4.3E-25 1.5E-29 186.7 14.3 135 47-186 2-143 (167)
74 2jab_A H10-2-G3; HER2, darpin, 99.9 6.7E-25 2.3E-29 179.4 14.4 128 7-139 9-136 (136)
75 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-24 4.1E-29 174.4 15.2 126 11-141 1-126 (126)
76 3f6q_A Integrin-linked protein 99.9 5.6E-25 1.9E-29 188.3 13.5 142 3-149 30-171 (179)
77 1sw6_A Regulatory protein SWI6 99.9 1.6E-25 5.6E-30 210.6 10.4 161 17-186 102-291 (327)
78 2vge_A RELA-associated inhibit 99.9 2.7E-25 9.2E-30 198.4 10.1 151 28-183 1-161 (229)
79 3t8k_A Uncharacterized protein 99.9 6.9E-26 2.3E-30 195.7 6.0 140 12-157 6-162 (186)
80 1bi7_B P16INK4A, MTS1, multipl 99.9 5.9E-25 2E-29 184.1 9.8 134 44-183 8-149 (156)
81 3twr_A Tankyrase-2; ankyrin re 99.9 2E-24 6.8E-29 182.3 13.1 132 3-140 33-164 (165)
82 1bd8_A P19INK4D CDK4/6 inhibit 99.9 4.2E-24 1.5E-28 178.4 15.0 129 3-138 27-155 (156)
83 1ycs_B 53BP2, P53BP2; ankyrin 99.9 3.5E-25 1.2E-29 198.8 8.1 144 9-157 34-189 (239)
84 1awc_B Protein (GA binding pro 99.9 9.2E-24 3.2E-28 176.0 15.9 123 8-135 30-152 (153)
85 3c5r_A BARD-1, BRCA1-associate 99.9 7.6E-25 2.6E-29 179.1 7.6 125 7-136 5-129 (137)
86 1d9s_A Cyclin-dependent kinase 99.9 4.8E-24 1.6E-28 174.3 10.6 113 42-157 6-119 (136)
87 3ehr_A Osteoclast-stimulating 99.9 3.6E-24 1.2E-28 189.8 7.4 136 8-148 69-205 (222)
88 3c5r_A BARD-1, BRCA1-associate 99.9 3.2E-23 1.1E-27 169.4 12.0 113 44-158 6-118 (137)
89 2b0o_E UPLC1; arfgap, structur 99.9 2.8E-23 9.6E-28 193.0 13.1 140 11-158 150-295 (301)
90 3aaa_C Myotrophin, protein V-1 99.9 4.6E-23 1.6E-27 165.3 12.1 110 46-157 5-114 (123)
91 3aaa_C Myotrophin, protein V-1 99.9 3.1E-23 1.1E-27 166.3 10.6 116 9-129 4-119 (123)
92 2jab_A H10-2-G3; HER2, darpin, 99.9 4.7E-23 1.6E-27 168.3 11.8 112 45-158 11-122 (136)
93 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.9E-22 6.6E-27 161.5 13.4 109 47-157 1-109 (126)
94 3t8k_A Uncharacterized protein 99.9 1E-23 3.5E-28 182.0 5.8 136 4-144 29-182 (186)
95 2aja_A Ankyrin repeat family p 99.9 2.6E-24 9E-29 205.5 -0.2 149 8-165 88-248 (376)
96 3ehr_A Osteoclast-stimulating 99.9 1.8E-22 6.1E-27 178.8 10.5 111 45-157 70-181 (222)
97 3ui2_A Signal recognition part 99.9 2.4E-22 8.1E-27 181.0 11.4 126 9-157 42-168 (244)
98 3deo_A Signal recognition part 99.9 3E-22 1E-26 172.1 11.5 126 9-157 41-167 (183)
99 3ui2_A Signal recognition part 99.9 1.7E-23 5.7E-28 188.6 3.4 151 11-183 14-165 (244)
100 3lvq_E ARF-GAP with SH3 domain 99.9 2.6E-21 9E-26 192.1 15.7 139 11-157 131-275 (497)
101 1dcq_A PYK2-associated protein 99.9 1.7E-21 5.8E-26 178.9 13.3 128 12-141 130-263 (278)
102 3deo_A Signal recognition part 99.9 1.3E-21 4.5E-26 168.1 11.6 111 45-158 41-152 (183)
103 3jue_A Arfgap with coiled-coil 99.9 2.2E-21 7.5E-26 184.6 14.1 146 9-157 196-345 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.9 5.5E-21 1.9E-25 145.3 11.7 92 48-141 2-93 (93)
105 2l6b_A NR1C; ankyrin, consensu 99.8 4.6E-21 1.6E-25 151.5 8.3 107 44-152 5-111 (115)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 3.9E-20 1.3E-24 140.5 11.5 93 11-107 1-93 (93)
107 2l6b_A NR1C; ankyrin, consensu 99.8 3.5E-20 1.2E-24 146.5 9.0 110 6-120 3-112 (115)
108 2b0o_E UPLC1; arfgap, structur 99.8 9.6E-20 3.3E-24 169.1 13.1 129 48-186 151-294 (301)
109 3jue_A Arfgap with coiled-coil 99.8 4.8E-20 1.6E-24 175.4 11.0 134 48-183 199-342 (368)
110 1dcq_A PYK2-associated protein 99.8 3.5E-19 1.2E-23 163.4 13.9 149 8-157 62-246 (278)
111 3lvq_E ARF-GAP with SH3 domain 99.8 3.9E-19 1.3E-23 176.4 12.9 129 48-181 132-276 (497)
112 2aja_A Ankyrin repeat family p 99.8 7E-21 2.4E-25 181.8 -2.9 137 7-157 123-262 (376)
113 2zgd_A 3 repeat synthetic anky 99.7 1E-17 3.4E-22 131.4 9.6 90 44-135 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 2.1E-17 7.1E-22 129.6 10.8 93 5-101 17-109 (110)
115 1gp8_A Protein (scaffolding pr 29.0 39 0.0013 19.8 2.2 19 15-33 16-34 (40)
116 3zrh_A Ubiquitin thioesterase 27.9 1.4E+02 0.0047 27.9 6.8 52 18-69 28-90 (454)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.4e-31 Score=225.44 Aligned_cols=147 Identities=34% Similarity=0.434 Sum_probs=138.6
Q ss_pred hHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhC
Q 040055 14 HKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEG 93 (387)
Q Consensus 14 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g 93 (387)
++|+.||+.|+.++|+.|+++++++ +.+|..|+||||+|+..++.++++.|+++++++ +.+|.+|+||||+|+..|
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadv---n~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g 81 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADV---NASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENG 81 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcC
Confidence 5899999999999999999999876 556888999999999999999999999999998 788999999999999999
Q ss_pred cHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhcccc
Q 040055 94 HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIP 165 (387)
Q Consensus 94 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~ 165 (387)
+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ +++|++.|
T Consensus 82 ~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 82 HKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 999999999999988 889999999999999999999999999999999999999999999998 67777777
No 2
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=4.9e-32 Score=245.61 Aligned_cols=177 Identities=21% Similarity=0.227 Sum_probs=125.8
Q ss_pred CCCCccCCCCchHhHHHHHcC-------------CHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040055 3 IGAREHDEDSTHKLYEASLRG-------------SVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLN 69 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 69 (387)
+++|.+|.+|.||||.|+..| +.++++.|+++++.+... .|..|+||||+|+..|+.++++.|++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~--~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQ--TDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp ---------------------------------------------------C--CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccc--cCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 467888999999999999977 899999999998866332 46779999999999999999999999
Q ss_pred cCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCC
Q 040055 70 HKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHG 149 (387)
Q Consensus 70 ~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G 149 (387)
+++++ +.+|..|+||||+|+..|+.+++++|++.++...+.+|.+|+||||+|+..|+.+++++|++.|++++..|.+|
T Consensus 79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g 157 (253)
T 1yyh_A 79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLG 157 (253)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTS
T ss_pred cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCC
Confidence 99998 77899999999999999999999999999885557889999999999999999999999999999999999999
Q ss_pred CcHHHHHh-------hhhhccccccccccccccccCCCcchHh
Q 040055 150 DTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 150 ~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
+||||+|+ +++|++.+ ++++.+|..|.|||+.+
T Consensus 158 ~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpL~~A 197 (253)
T 1yyh_A 158 KSALHWAAAVNNVDAAVVLLKNG---ANKDMQNNREETPLFLA 197 (253)
T ss_dssp CBHHHHHHHHTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHH
Confidence 99999998 67788887 88999999999999943
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=1.6e-31 Score=244.96 Aligned_cols=177 Identities=24% Similarity=0.202 Sum_probs=156.6
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
++.+|.+|.||||+|++.|+.+++++|++.++.....+..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 4678999999999999999999999999988764334567788999999999999999999999999998 788999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCcc----------------------------------------------ccccCCCCCh
Q 040055 85 PLHLASAEGHVQIVKELLLANKDA----------------------------------------------CLVADQDGRI 118 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~----------------------------------------------~~~~d~~g~t 118 (387)
|||+|+..|+.+++++|++.++.. .+.+|..|+|
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 160 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHT 160 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcC
Confidence 999999999999999999876541 2567888999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCcHHHHHh-------hhhhccccccccccccccccCCCcchHh
Q 040055 119 PLHLAAMRGRVEVVQELISANFDSVLVKF-HGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 119 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~-~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
|||+|+..|+.+++++|+++|++++..+. .|+||||+|+ +++|++.+ ++++.+|..|+|||+.+
T Consensus 161 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~tpL~~A 232 (282)
T 1oy3_D 161 PLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG---ADPTARMYGGRTPLGSA 232 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC---CCCcccccCCCCHHHHH
Confidence 99999999999999999999999999875 4999999998 77888887 88999999999999943
No 4
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=99.97 E-value=3.3e-31 Score=242.99 Aligned_cols=173 Identities=20% Similarity=0.192 Sum_probs=150.2
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch----------
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL---------- 74 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~---------- 74 (387)
++.+|..|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|++++++.
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~ 114 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV---LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLT 114 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhh
Confidence 6788999999999999999999999999999876 456778999999999999999999999987651
Q ss_pred ------------------------------------hhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccC-CCCC
Q 040055 75 ------------------------------------AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD-QDGR 117 (387)
Q Consensus 75 ------------------------------------~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~ 117 (387)
.+.+|..|+||||+|+..|+.+++++|++.++++ +..+ ..|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~ 193 (282)
T 1oy3_D 115 QSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGR 193 (282)
T ss_dssp -----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCC
T ss_pred cccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCc
Confidence 2566889999999999999999999999999988 5555 4599
Q ss_pred hHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchH
Q 040055 118 IPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQK 184 (387)
Q Consensus 118 t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~ 184 (387)
||||+|+..|+.+++++|+++|++++.+|..|+||||+|+ +++|++.+ ++++.+|..|.||++.
T Consensus 194 tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~~ 264 (282)
T 1oy3_D 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHG---APEPEDGGDKLSPCSS 264 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTT---CCCCCCC---------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcC---CCcCcCCCcccccccc
Confidence 9999999999999999999999999999999999999998 78888888 8999999999999983
No 5
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=239.16 Aligned_cols=171 Identities=23% Similarity=0.277 Sum_probs=120.7
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
++++.+|.+|.||||+|+..|+.+++++|+++++++ +..|..|+||||+|+..|+.++++.|+++++++ + .+..|
T Consensus 27 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g 101 (261)
T 2xai_A 27 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-Q-PESDL 101 (261)
T ss_dssp CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTT
T ss_pred CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-C-CCCCC
Confidence 456667777777777777777777777777776654 344566777777777777777777777777665 2 24457
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-----
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT----- 157 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~----- 157 (387)
.||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++. |..|+||||+|+
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~Lh~A~~~~~~ 179 (261)
T 2xai_A 102 ASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVARTASE 179 (261)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTTC-CBTTBCHHHHHHHHTCH
T ss_pred CCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC-CCCCCChHHHHHHcCCH
Confidence 77777777777777777777777666 56677777777777777777777777777777764 667777777776
Q ss_pred --hhhhccccccccccccccccCCCcch
Q 040055 158 --TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 158 --~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
+++|++.+ ++++.+|.+|+||++
T Consensus 180 ~~v~~Ll~~g---ad~~~~d~~g~tpl~ 204 (261)
T 2xai_A 180 ELACLLMDFG---ADTQAKNAEGKRPVE 204 (261)
T ss_dssp HHHHHHHHTT---CCTTCCCTTSCCGGG
T ss_pred HHHHHHHHcC---CCCCCcCCCCCChhh
Confidence 55666665 667777777777776
No 6
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=1.7e-30 Score=232.49 Aligned_cols=176 Identities=23% Similarity=0.275 Sum_probs=162.5
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
++.+.+|.+|.||||.|++.|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 77 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI---DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEG 77 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTS
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc---CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCC
Confidence 578889999999999999999999999999999866 455778999999999999999999999999988 7789999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-----
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT----- 157 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~----- 157 (387)
.||||+|+..|+.+++++|++.++...+..|..|+||||+|+..|+.+++++|++.|++++..|.+|+||||+|+
T Consensus 78 ~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 157 (237)
T 3b7b_A 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCV 157 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCH
T ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCH
Confidence 999999999999999999999985555888999999999999999999999999999999999999999999998
Q ss_pred --hhhhccccccccccccccccCCCcchHh
Q 040055 158 --TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 158 --~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
+++|++.+ ++++..|..|.||++..
T Consensus 158 ~~~~~Ll~~g---~~~~~~~~~g~t~L~~A 184 (237)
T 3b7b_A 158 DIAEILLAAK---CDLHAVNIHGDSPLHIA 184 (237)
T ss_dssp HHHHHHHTTT---CCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHcC---CCCCCcCCCCCCHHHHH
Confidence 77788887 88999999999999943
No 7
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=1.7e-30 Score=230.24 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=161.4
Q ss_pred CCCCcc-CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 3 IGAREH-DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 3 ~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
.+++.. |.+|.||||+|++.|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++...+..|..
T Consensus 15 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~ 91 (223)
T 2f8y_A 15 ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHD 91 (223)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTT
T ss_pred CCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCC
Confidence 344444 789999999999999999999999998765 4567889999999999999999999999998444888999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 92 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 170 (223)
T 2f8y_A 92 GTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGS 170 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred CCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCC
Confidence 999999999999999999999999887 788999999999999999999999999999999999999999999998
Q ss_pred ---hhhhccccccccccccccccCCCcchHhH
Q 040055 158 ---TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 158 ---~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
+++|++.+ ++++.+|..|.||++.+.
T Consensus 171 ~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~ 199 (223)
T 2f8y_A 171 YETAKVLLDHF---ANRDITDHMDRLPRDIAQ 199 (223)
T ss_dssp HHHHHHHHHTT---CCTTCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHcC---CCCccccccCCCHHHHHH
Confidence 77888887 889999999999999443
No 8
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.97 E-value=9.1e-31 Score=233.36 Aligned_cols=168 Identities=24% Similarity=0.293 Sum_probs=80.2
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
+|.+|.||||+|+..|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 36 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 111 (231)
T 3aji_A 36 TDQDSRTALHWACSAGHTEIVEFLLQLGVPV---NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLH 111 (231)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC---CCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3444445555555555555555555444332 223334445555555555555555555444444 344444455555
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSY 160 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ 160 (387)
+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++
T Consensus 112 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 190 (231)
T 3aji_A 112 YAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKF 190 (231)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHH
Confidence 555555555555444444444 344444455555555555555555555444444444444555555444 334
Q ss_pred hccccccccccccccccCCCcch
Q 040055 161 LLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 161 ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
|++.+ ++++.+|..|.||++
T Consensus 191 Ll~~g---a~~~~~~~~g~t~l~ 210 (231)
T 3aji_A 191 LVTQG---ASIYIENKEEKTPLQ 210 (231)
T ss_dssp HHHTT---CCSCCCCTTSCCHHH
T ss_pred HHHCC---CCCCCCCCCCCCHHH
Confidence 44443 444444445555444
No 9
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=99.97 E-value=6.7e-31 Score=238.15 Aligned_cols=172 Identities=16% Similarity=0.130 Sum_probs=159.7
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
+|.+|.||||+|++.|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++...+..|..|+||||
T Consensus 53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~ 129 (253)
T 1yyh_A 53 TDRTGETALHLAARYSRSDAAKRLLEASADA---NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 129 (253)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHH
Confidence 5889999999999999999999999999866 5567889999999999999999999999998444888999999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSY 160 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ 160 (387)
+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+ +++
T Consensus 130 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~ 208 (253)
T 1yyh_A 130 LAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKV 208 (253)
T ss_dssp HHHHHTCSSHHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHH
T ss_pred HHHHcChHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999999988 789999999999999999999999999999999999999999999998 778
Q ss_pred hccccccccccccccccCCCcchHhH
Q 040055 161 LLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 161 ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
|++.+ ++++.+|..|+||++.+.
T Consensus 209 Ll~~g---a~~~~~d~~g~tpl~~A~ 231 (253)
T 1yyh_A 209 LLDHF---ANRDITDHMDRLPRDIAQ 231 (253)
T ss_dssp HHHTT---CCTTCCCTTCCCHHHHHH
T ss_pred HHHcC---CCccccccCCCCHHHHHH
Confidence 88888 889999999999999443
No 10
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.97 E-value=1.6e-30 Score=231.08 Aligned_cols=171 Identities=19% Similarity=0.212 Sum_probs=87.6
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CchhhccCCCCChH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSP 85 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tp 85 (387)
+|.+|.||||+|++.|+.+++++|++.++...-....+..|+||||+|+..|+.++++.|++++ +++ +..|..|+||
T Consensus 32 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~ 110 (228)
T 2dzn_A 32 KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTC 110 (228)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCH
Confidence 4455555555555555555555555555222111113444555555555555555555555554 443 4445555555
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHh-------
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSVLVKFHGDTVLHLCT------- 157 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~d~~G~T~Lh~A~------- 157 (387)
||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|++.| ++++..|.+|+||||+|+
T Consensus 111 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~ 189 (228)
T 2dzn_A 111 LHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDA 189 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHH
Confidence 55555555555555555555444 445555555555555555555555555555 555555555555555554
Q ss_pred hhhhc-cccccccccccccccCCCcch
Q 040055 158 TSYLL-SIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 158 ~~~ll-~~~~~~~~~~~~~~~G~t~l~ 183 (387)
+++|+ +.+ ++++.+|.+|+||++
T Consensus 190 v~~Ll~~~g---a~~~~~~~~g~t~l~ 213 (228)
T 2dzn_A 190 AVLLVEKYG---AEYDLVDNKGAKAED 213 (228)
T ss_dssp HHHHHHHHC---CCSCCBCTTSCBGGG
T ss_pred HHHHHHhcC---CCCCccCCCCCcHHH
Confidence 34444 334 445555555555554
No 11
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=2e-30 Score=232.42 Aligned_cols=212 Identities=21% Similarity=0.244 Sum_probs=163.6
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHh----cCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCC
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQ----NDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS 80 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 80 (387)
++.+|.+|.||||+|++.|+.+++++|++ .+.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~ 77 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL---DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDR 77 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCT
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC---CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCC
Confidence 46789999999999999999999999987 45443 456778999999999999999999999999988 67789
Q ss_pred CCChHHHHHHHhCcHHHHHHHHhhCC----ccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHH
Q 040055 81 LKHSPLHLASAEGHVQIVKELLLANK----DACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVK-FHGDTVLHL 155 (387)
Q Consensus 81 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d-~~G~T~Lh~ 155 (387)
.|+||||+|+..|+.+++++|++.++ +. +..|..|+||||+|+..|+.+++++|++.|++++..| ..|+||||+
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~ 156 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIH 156 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHH
Confidence 99999999999999999999999987 44 6788899999999999999999999999999999887 789999999
Q ss_pred Hh-------hhhhccccccccccccccccCCCcchHhHH-------HHhcCCCCcccCCCCCCCccccccccCchhhHHH
Q 040055 156 CT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDLQ-------EAIAVPSTKSETKALPLSPNVTLHHRDEPQAQAS 221 (387)
Q Consensus 156 A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (387)
|+ +++|++.+ ++++.+|..|.||||.+.. +.+-... .........+...++........+.
T Consensus 157 A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~g~tpl~~A~~~~~~~i 231 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHG---ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG--ADSSLKNCHNDTPLMVARSRRVIDI 231 (241)
T ss_dssp HHHTTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCTTTTCSSHHHHHH
T ss_pred HHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCCCCcCCCCCCHHHHHHhcCcHHH
Confidence 98 67788877 7899999999999993332 1111111 1112222334455555555555555
Q ss_pred HHhhh
Q 040055 222 LRQLL 226 (387)
Q Consensus 222 ~~~l~ 226 (387)
++.+.
T Consensus 232 ~~~l~ 236 (241)
T 1k1a_A 232 LRGKA 236 (241)
T ss_dssp HTC--
T ss_pred Hhhhc
Confidence 55543
No 12
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=99.97 E-value=2.4e-30 Score=231.77 Aligned_cols=174 Identities=19% Similarity=0.142 Sum_probs=161.1
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC----chhhc
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP----ELAKE 77 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~----~~~~~ 77 (387)
+.+++.+|.+|.||||+|+..|+.+++++|++++.++ +..+..|+||||+|+..|+.++++.|++.++ ++ +.
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~ 111 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP---MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDL-EA 111 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TC
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc-cc
Confidence 3578889999999999999999999999999999865 4457789999999999999999999999987 55 67
Q ss_pred cCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 040055 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLC 156 (387)
Q Consensus 78 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A 156 (387)
.|..|+||||+|+..|+.+++++|++.+.++ +..+ ..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|
T Consensus 112 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A 190 (241)
T 1k1a_A 112 RNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190 (241)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHH
T ss_pred cCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence 7899999999999999999999999999988 5556 8899999999999999999999999999999999999999999
Q ss_pred h-------hhhhccccccccccccccccCCCcch
Q 040055 157 T-------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 157 ~-------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
+ +++|++.+ ++++.+|..|+||++
T Consensus 191 ~~~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~ 221 (241)
T 1k1a_A 191 SGRGLLPLVRTLVRSG---ADSSLKNCHNDTPLM 221 (241)
T ss_dssp HHHTCHHHHHHHHHTT---CCTTCCCTTSCCTTT
T ss_pred HHcCCHHHHHHHHhcC---CCCCCcCCCCCCHHH
Confidence 8 77888887 889999999999999
No 13
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=99.97 E-value=2.4e-30 Score=231.56 Aligned_cols=176 Identities=28% Similarity=0.349 Sum_probs=162.6
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+++++..|.+|.||||.|+..|+.+++++|++.+..+ +..+..|.||||+|+..|+.+++++|+++++...+..|..
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~ 110 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV---DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDG 110 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC---CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTT
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCC
Confidence 4678888999999999999999999999999999865 4457789999999999999999999999994434788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++.|++++..|..|+||||+|+
T Consensus 111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 189 (237)
T 3b7b_A 111 GWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENR 189 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC
Confidence 999999999999999999999999988 788999999999999999999999999999999999999999999998
Q ss_pred ---hhhhccccccccccccccccCCCcchH
Q 040055 158 ---TSYLLSIPQIRVDVNSLIENGFTMLQK 184 (387)
Q Consensus 158 ---~~~ll~~~~~~~~~~~~~~~G~t~l~~ 184 (387)
+++|++.+ ++++.+|++|+||++.
T Consensus 190 ~~~v~~Ll~~g---ad~~~~d~~g~t~l~~ 216 (237)
T 3b7b_A 190 YDCVVLFLSRD---SDVTLKNKEGETPLQC 216 (237)
T ss_dssp HHHHHHHHTTT---CCTTCCCTTSCCHHHH
T ss_pred HhHHHHHHHcC---CCCCccCCCCCCHHHH
Confidence 67788887 8899999999999983
No 14
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.1e-30 Score=228.75 Aligned_cols=170 Identities=26% Similarity=0.280 Sum_probs=150.2
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhc-CCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchh----hccCCCCChH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQN-DPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELA----KELDSLKHSP 85 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~----~~~d~~g~tp 85 (387)
.|+||||.|++.|+.++++.|++. +.++ +..|..|+||||+|+..|+.+++++|+++++++. ...|..|+||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEV---HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCc---ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCH
Confidence 589999999999999999999998 6544 5567889999999999999999999999998763 3456789999
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccccCC-------------CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcH
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLVADQ-------------DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTV 152 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-------------~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~ 152 (387)
||+|+..|+.+++++|++.++++ +.++. +|+||||+|+..|+.+++++|+++|++++.+|.+|+||
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~ 157 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV 157 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence 99999999999999999999887 44544 79999999999999999999999999999999999999
Q ss_pred HHHHh-------h----hhhcccccccccc------ccccccCCCcchHhHH
Q 040055 153 LHLCT-------T----SYLLSIPQIRVDV------NSLIENGFTMLQKDLQ 187 (387)
Q Consensus 153 Lh~A~-------~----~~ll~~~~~~~~~------~~~~~~G~t~l~~~~~ 187 (387)
||+|+ + ++|++.+ ++. +.+|..|+||++.+..
T Consensus 158 L~~A~~~~~~~~~~~i~~~Ll~~g---~~~~~~~~~~~~~~~g~tpl~~A~~ 206 (232)
T 2rfa_A 158 LHILILQPNKTFACQMYNLLLSYD---GGDHLKSLELVPNNQGLTPFKLAGV 206 (232)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHTT---CSCSSCCGGGCCCTTSCCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC---CchhhhhhhccCCCCCCCHHHHHHH
Confidence 99998 2 7777777 444 6899999999995543
No 15
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1.2e-30 Score=233.77 Aligned_cols=174 Identities=25% Similarity=0.295 Sum_probs=148.1
Q ss_pred CccCCCCchHhHHHHHcCCHHHHHHHHhcCCcc-cccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 6 REHDEDSTHKLYEASLRGSVRSLNTLMQNDPLI-LRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 6 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
+.+|.+|.||||+|+..|+.++++.|++.+... .+.+..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 80 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNT 80 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCC
Confidence 457889999999999999999999999887531 123456778999999999999999999999999998 778999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCc-----cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccccc-CCCcHHHHHh-
Q 040055 85 PLHLASAEGHVQIVKELLLANKD-----ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKF-HGDTVLHLCT- 157 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~-----~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~-~G~T~Lh~A~- 157 (387)
|||+|+..|+.+++++|++.+++ ..+..|..|+||||+|+..|+.+++++|+++|++++..|. .|+||||+|+
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 81 PLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHH
Confidence 99999999999999999998754 2467888999999999999999999999999999999987 9999999998
Q ss_pred ------hhhhccccccccccccccccCCCcch
Q 040055 158 ------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 158 ------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
+++|++.+ ++++.+|..|+||++
T Consensus 161 ~~~~~~v~~Ll~~g---a~~~~~~~~g~tpl~ 189 (236)
T 1ikn_D 161 LQNPDLVSLLLKCG---ADVNRVTYQGYSPYQ 189 (236)
T ss_dssp TTCHHHHHHHHTTT---CCSCCCCTTCCCGGG
T ss_pred cCCHHHHHHHHHcC---CCCCcccCCCCCHHH
Confidence 77888887 889999999999998
No 16
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.1e-30 Score=239.08 Aligned_cols=173 Identities=26% Similarity=0.309 Sum_probs=134.7
Q ss_pred CCccCCCCchHhHHHHHcCCHH-HHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCC
Q 040055 5 AREHDEDSTHKLYEASLRGSVR-SLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~-~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 83 (387)
++..|.+|.||||.|+..++.+ +++.|++.+.++ +..|.+|+||||+|+..|+.+++++|++.++++ +..+..|.
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv---n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~ 120 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV---NVTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQA 120 (269)
T ss_dssp ------------------------------CCCCT---TCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCC
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCC
Confidence 5667888999999999988764 789999999866 556788999999999999999999999999998 78899999
Q ss_pred hHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh------
Q 040055 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT------ 157 (387)
Q Consensus 84 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~------ 157 (387)
||+|+|+..++.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 121 t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~ 199 (269)
T 4b93_B 121 VPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199 (269)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred CccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHH
Confidence 9999999999999999999999988 789999999999999999999999999999999999999999999998
Q ss_pred -hhhhccccccccccccccccCCCcchHh
Q 040055 158 -TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 158 -~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
+++|++.+ +|++.+|++|+|||+.+
T Consensus 200 ~v~~Ll~~G---ad~~~~d~~G~TpL~~A 225 (269)
T 4b93_B 200 VVELLLLHG---ASVQVLNKRQRTAVDCA 225 (269)
T ss_dssp HHHHHHHTT---CCSCCCCTTSCCSGGGS
T ss_pred HHHHHHHCC---CCCCCcCCCCCCHHHHH
Confidence 78888888 89999999999999943
No 17
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-30 Score=237.97 Aligned_cols=151 Identities=22% Similarity=0.317 Sum_probs=143.7
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
++++|.+|.+|.||||+|+..|+.+++++|++.++++ ...+..|.||+|+|+..++.++++.|++.++++ +.+|..
T Consensus 76 Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~---~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~ 151 (269)
T 4b93_B 76 GLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANA---GARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLS 151 (269)
T ss_dssp CCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc---CccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCC
Confidence 4688999999999999999999999999999999866 456778999999999999999999999999998 788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~ 226 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVDCAE 226 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGGGSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence 999999999999999999999999988 889999999999999999999999999999999999999999999997
No 18
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.97 E-value=5.9e-30 Score=236.24 Aligned_cols=171 Identities=28% Similarity=0.280 Sum_probs=153.4
Q ss_pred CCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCC
Q 040055 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (387)
Q Consensus 4 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 83 (387)
..+.+|.+|.||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++++++ +.+|..|+
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~ 126 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWH 126 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS---CEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCC
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCC
Confidence 46778999999999999999999999999998765 445778999999999999999999999999998 78899999
Q ss_pred hHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh------
Q 040055 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT------ 157 (387)
Q Consensus 84 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~------ 157 (387)
||||+|+..|+.+++++|++.+++. + .+.+|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+
T Consensus 127 t~L~~A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~ 204 (285)
T 3d9h_A 127 TPLFNACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRA 204 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCS-S-CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHH
T ss_pred CHHHHHHHcCHHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHH
Confidence 9999999999999999999998877 3 3456999999999999999999999999999999999999999998
Q ss_pred -hhhhccccccccccccccccCCCcchH
Q 040055 158 -TSYLLSIPQIRVDVNSLIENGFTMLQK 184 (387)
Q Consensus 158 -~~~ll~~~~~~~~~~~~~~~G~t~l~~ 184 (387)
+++|++.+ ++++. |..|.|||+.
T Consensus 205 ~v~~Ll~~g---a~~~~-~~~g~t~L~~ 228 (285)
T 3d9h_A 205 CVKKLLESG---ADVNQ-GKGQDSPLHA 228 (285)
T ss_dssp HHHHHHHTT---CCTTC-CBTTBCHHHH
T ss_pred HHHHHHHCC---CCCCC-CCCCCCHHHH
Confidence 67788777 67774 8899999993
No 19
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=1.1e-29 Score=239.75 Aligned_cols=177 Identities=24% Similarity=0.267 Sum_probs=154.5
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+++++.+|.+|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++++ +..|..
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~ 123 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV---HAKDKGGLVPLHNACSYGHYEVTELLLKHGACV-NAMDLW 123 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCC
Confidence 4577888999999999999999999999999999866 456778999999999999999999999999998 778999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCcccc---------------------------------------------------
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACL--------------------------------------------------- 110 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~--------------------------------------------------- 110 (387)
|+||||+|+..|+.+++++|++.+.+...
T Consensus 124 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 203 (351)
T 3utm_A 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEII 203 (351)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcc
Confidence 99999999999999999999998876521
Q ss_pred --ccCCCCChHHHHHHHc---CCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccC
Q 040055 111 --VADQDGRIPLHLAAMR---GRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENG 178 (387)
Q Consensus 111 --~~d~~g~t~Lh~A~~~---g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G 178 (387)
..+..|+||||+|+.. +..+++++|++.|++++..|.+|+||||+|+ +++|++.+ ++++.+|..|
T Consensus 204 ~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---a~~n~~d~~g 280 (351)
T 3utm_A 204 NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG---AKMNALDSLG 280 (351)
T ss_dssp TCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTS
T ss_pred cccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCC
Confidence 1345678899999988 5578999999999999989999999999998 67788777 7899999999
Q ss_pred CCcchHh
Q 040055 179 FTMLQKD 185 (387)
Q Consensus 179 ~t~l~~~ 185 (387)
+|||+.+
T Consensus 281 ~t~L~~A 287 (351)
T 3utm_A 281 QTALHRA 287 (351)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 9999833
No 20
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=3.9e-30 Score=238.29 Aligned_cols=167 Identities=23% Similarity=0.308 Sum_probs=126.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 88 (387)
+.+|.||||.|+..|+.++++.|+++++++ +..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~ 112 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI---NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHA 112 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHH
Confidence 345667777777777777777777777654 334556777777777777777777777777776 5667777777777
Q ss_pred HHHhCcHHHHHHHHhhCCccccc---------------------------------------------------------
Q 040055 89 ASAEGHVQIVKELLLANKDACLV--------------------------------------------------------- 111 (387)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~--------------------------------------------------------- 111 (387)
|+..|+.+++++|++.++++ +.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 191 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIN 191 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcc
Confidence 77777777777777766554 22
Q ss_pred ---cCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCc
Q 040055 112 ---ADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTM 181 (387)
Q Consensus 112 ---~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~ 181 (387)
.+..|.||||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ++++.+|..|+||
T Consensus 192 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---ad~~~~d~~g~t~ 268 (299)
T 1s70_B 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL---CDMEAVNKVGQTA 268 (299)
T ss_dssp CCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCT
T ss_pred hhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC---CCCCCcCCCCCCH
Confidence 3356788888899999999999999999999888989999999988 67788877 7888899999999
Q ss_pred ch
Q 040055 182 LQ 183 (387)
Q Consensus 182 l~ 183 (387)
++
T Consensus 269 l~ 270 (299)
T 1s70_B 269 FD 270 (299)
T ss_dssp TT
T ss_pred HH
Confidence 88
No 21
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=1e-29 Score=227.59 Aligned_cols=174 Identities=20% Similarity=0.144 Sum_probs=157.1
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch-----hhc
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL-----AKE 77 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~-----~~~ 77 (387)
.+++.+|.+|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.++++.|++++++. .+.
T Consensus 36 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~ 112 (236)
T 1ikn_D 36 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP---ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 112 (236)
T ss_dssp CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS---CCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc
Confidence 367889999999999999999999999999999865 456778999999999999999999999998642 367
Q ss_pred cCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCC-CCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 040055 78 LDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ-DGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLC 156 (387)
Q Consensus 78 ~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A 156 (387)
.|..|+||||+|+..|+.+++++|++.++++ +.++. .|+||||+|+..|+.+++++|+++|++++..|..|+||||+|
T Consensus 113 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A 191 (236)
T 1ikn_D 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLT 191 (236)
T ss_dssp CCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHH
Confidence 7889999999999999999999999999988 67776 999999999999999999999999999999999999999999
Q ss_pred h-------hhhhcccccccccc--ccccccCCCcch
Q 040055 157 T-------TSYLLSIPQIRVDV--NSLIENGFTMLQ 183 (387)
Q Consensus 157 ~-------~~~ll~~~~~~~~~--~~~~~~G~t~l~ 183 (387)
+ +++|++.+ ++. ...+.+|.||.+
T Consensus 192 ~~~~~~~~~~~Ll~~g---a~~~~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 192 WGRPSTRIQQQLGQLT---LENLQMLPESEDEESYD 224 (236)
T ss_dssp TTSSCHHHHHHHHTTS---CGGGSSCCCCCTTTCCC
T ss_pred HccCchHHHHHHHHcc---hhhhhcCCccchHHHHh
Confidence 8 67788887 444 478888989887
No 22
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=2.2e-29 Score=219.55 Aligned_cols=172 Identities=20% Similarity=0.245 Sum_probs=155.2
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHH
Q 040055 10 EDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (387)
Q Consensus 10 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 89 (387)
..+.||||.|+..|+.+.++.|++.++. +.+..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTY--QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTC--CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCC--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 4688999999999999999999998872 22446778999999999999999999999999998 78899999999999
Q ss_pred HHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCccccccCCCcHHHHHh-----------
Q 040055 90 SAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN-FDSVLVKFHGDTVLHLCT----------- 157 (387)
Q Consensus 90 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~d~~G~T~Lh~A~----------- 157 (387)
+..|+.+++++|++.++...+..|..|+||||+|+..|+.+++++|+++| .+++..|..|+||||+|+
T Consensus 80 ~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~ 159 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159 (201)
T ss_dssp HHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHH
T ss_pred HHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHH
Confidence 99999999999997766555889999999999999999999999999999 899999999999999998
Q ss_pred -hhhhccccccccccccccccCCCcchHhHH
Q 040055 158 -TSYLLSIPQIRVDVNSLIENGFTMLQKDLQ 187 (387)
Q Consensus 158 -~~~ll~~~~~~~~~~~~~~~G~t~l~~~~~ 187 (387)
+++|++.+ ++++.+|..|+||++.+..
T Consensus 160 ~v~~Ll~~g---a~~~~~~~~g~t~l~~A~~ 187 (201)
T 3hra_A 160 IVKLLMENG---ADQSIKDNSGRTAMDYANQ 187 (201)
T ss_dssp HHHHHHHTT---CCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHCC---CCCCccCCCCCCHHHHHHH
Confidence 56777777 8899999999999995543
No 23
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=4.1e-29 Score=238.27 Aligned_cols=171 Identities=16% Similarity=0.157 Sum_probs=134.3
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhc----CCchhhc-
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH----KPELAKE- 77 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~----~~~~~~~- 77 (387)
++++.+|.+|.||||+|+..|+.+++++|+++++.. .+..|+||||+|+..|+.++++.|+++ +.++ +.
T Consensus 44 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~ 117 (364)
T 3ljn_A 44 VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH-----SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESL 117 (364)
T ss_dssp CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC-----CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHH
T ss_pred CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc-----cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHH
Confidence 445555666666666666666666666666665522 112356666666666666666666665 4444 23
Q ss_pred ----------------cCCCCChHHHHHHHhC--cHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 040055 78 ----------------LDSLKHSPLHLASAEG--HVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139 (387)
Q Consensus 78 ----------------~d~~g~tpLh~Aa~~g--~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 139 (387)
.|..|+||||+|+..| +.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 196 (364)
T 3ljn_A 118 LNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASP-TAKDKADETPLMRAMEFRNREALDLMMDTV 196 (364)
T ss_dssp HTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHC
T ss_pred HhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 6778999999999999 999999999999887 788999999999999999999999999999
Q ss_pred CC-----ccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcch
Q 040055 140 FD-----SVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 140 ~~-----~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
++ ++..|..|+||||+|+ +++|++.+ ++++.+|..|+|||+
T Consensus 197 ~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g---ad~~~~d~~g~tpL~ 249 (364)
T 3ljn_A 197 PSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG---IDVNMEDNEHTVPLY 249 (364)
T ss_dssp SCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT---CCTTCCCTTSCCHHH
T ss_pred cccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC---CCCCCCCCCCCCHHH
Confidence 98 8888999999999998 77888887 889999999999999
No 24
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=99.96 E-value=2.7e-29 Score=228.71 Aligned_cols=165 Identities=29% Similarity=0.297 Sum_probs=150.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
+|.||||+|++.|+.+++++|++++.++ +..|..|+||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAV---NIITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNAC 77 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHH
Confidence 5899999999999999999999998765 556788999999999999999999999999998 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhcc
Q 040055 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLS 163 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~ 163 (387)
..|+.+++++|++.+++.. .+.+|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 155 (261)
T 2xai_A 78 VSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE 155 (261)
T ss_dssp HHTCHHHHHHHHHTTCCSS--CSCTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence 9999999999999998873 4566999999999999999999999999999999999999999998 677888
Q ss_pred ccccccccccccccCCCcchHh
Q 040055 164 IPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 164 ~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
.+ ++++. +..|.||||..
T Consensus 156 ~g---~~~~~-~~~g~t~Lh~A 173 (261)
T 2xai_A 156 SG---ADVNQ-GKGQDSPLHAV 173 (261)
T ss_dssp HT---CCTTC-CBTTBCHHHHH
T ss_pred cC---CCCCC-CCCCCChHHHH
Confidence 77 77885 89999999943
No 25
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=230.25 Aligned_cols=173 Identities=23% Similarity=0.271 Sum_probs=159.5
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++++ +. +..
T Consensus 82 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~-~~~ 156 (285)
T 3d9h_A 82 GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQV---NGVTADWHTPLFNACVSGSWDCVNLLLQHGASV-QP-ESD 156 (285)
T ss_dssp TCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS---SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-SC-SCT
T ss_pred CCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCC-CC-CCC
Confidence 4678889999999999999999999999999998866 556788999999999999999999999999987 33 556
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|.||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++.|++++. |..|+||||+|+
T Consensus 157 g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~ 234 (285)
T 3d9h_A 157 LASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTAS 234 (285)
T ss_dssp TSCHHHHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCC
Confidence 999999999999999999999999988 78999999999999999999999999999999984 899999999998
Q ss_pred ---hhhhccccccccccccccccCCCcchH
Q 040055 158 ---TSYLLSIPQIRVDVNSLIENGFTMLQK 184 (387)
Q Consensus 158 ---~~~ll~~~~~~~~~~~~~~~G~t~l~~ 184 (387)
+++|++.+ ++++.+|.+|+||++.
T Consensus 235 ~~~v~~Ll~~g---ad~~~~d~~g~t~l~~ 261 (285)
T 3d9h_A 235 EELACLLMDFG---ADTQAKNAEGKRPVEL 261 (285)
T ss_dssp HHHHHHHHHTT---CCTTCCCTTSCCGGGG
T ss_pred HHHHHHHHHCC---CCCCCcCCCCCCHHHH
Confidence 77888887 8899999999999983
No 26
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.96 E-value=2.4e-29 Score=214.03 Aligned_cols=163 Identities=20% Similarity=0.200 Sum_probs=142.2
Q ss_pred CchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHH
Q 040055 12 STHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASA 91 (387)
Q Consensus 12 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~ 91 (387)
+.+|||.|++.|+.+.++.|++.++... +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLV--NKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGG--GCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccc--cCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHH
Confidence 4689999999999999999999988632 445778999999999999999999999999998 7889999999999999
Q ss_pred hCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccc
Q 040055 92 EGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSI 164 (387)
Q Consensus 92 ~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~ 164 (387)
.|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.
T Consensus 79 ~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 99999999999999988 788999999999999999999999999999999999999999999998 6667777
Q ss_pred cccccccccccccCCCc
Q 040055 165 PQIRVDVNSLIENGFTM 181 (387)
Q Consensus 165 ~~~~~~~~~~~~~G~t~ 181 (387)
+ ++....+..|.||
T Consensus 158 ~---~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 I---LKLFQSNLVPADP 171 (172)
T ss_dssp H---HHHSCC-------
T ss_pred H---HHHhcccCCCCCC
Confidence 6 6677777777776
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.96 E-value=5.2e-29 Score=221.37 Aligned_cols=170 Identities=25% Similarity=0.269 Sum_probs=152.0
Q ss_pred CchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC--CchhhccCCCCChHHHHH
Q 040055 12 STHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK--PELAKELDSLKHSPLHLA 89 (387)
Q Consensus 12 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~--~~~~~~~d~~g~tpLh~A 89 (387)
|+||||.|++.|+.++++.|++.++.... ..+..|+||||+|+..|+.++++.|++++ +++....|..|+||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLL--QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTT--CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccc--cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 78999999999999999999999986533 25778999999999999999999999999 666443789999999999
Q ss_pred HHhCcHHHHHHHHhhC--CccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhh
Q 040055 90 SAEGHVQIVKELLLAN--KDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSY 160 (387)
Q Consensus 90 a~~g~~~~v~~Ll~~~--~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ 160 (387)
+..|+.+++++|++.+ ++. +..|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+ +++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 158 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIEL 158 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHH
Confidence 9999999999999998 665 778999999999999999999999999999999999999999999998 677
Q ss_pred hccccccccccccccccCCCcchHhH
Q 040055 161 LLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 161 ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
|++.+. ++++.+|..|+|||+.+.
T Consensus 159 Ll~~g~--~~~~~~d~~g~t~L~~A~ 182 (228)
T 2dzn_A 159 LCGLGK--SAVNWQDKQGWTPLFHAL 182 (228)
T ss_dssp HHTTTC--CCSCCCCTTSCCHHHHHH
T ss_pred HHhcCc--ccccCcCCCCCCHHHHHH
Confidence 777763 568999999999999443
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=99.96 E-value=5.8e-29 Score=221.62 Aligned_cols=170 Identities=25% Similarity=0.294 Sum_probs=156.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 88 (387)
+..+.+|||.|++.|+.+.++.|++.++... +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~--~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLA--TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGG--GCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhh--hcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHH
Confidence 4457899999999999999999999887543 345778999999999999999999999999998 7889999999999
Q ss_pred HHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhh
Q 040055 89 ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYL 161 (387)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~l 161 (387)
|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+ +++|
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 158 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHH
Confidence 99999999999999999888 788999999999999999999999999999999999999999999998 6778
Q ss_pred ccccccccccccccccCCCcchHh
Q 040055 162 LSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 162 l~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
++.+ ++++.+|..|.||++.+
T Consensus 159 l~~g---~~~~~~~~~g~t~L~~A 179 (231)
T 3aji_A 159 LFYK---ASTNIQDTEGNTPLHLA 179 (231)
T ss_dssp HHTT---CCSCCCCTTSCCHHHHH
T ss_pred HhcC---CCccccCCCCCCHHHHH
Confidence 8877 78999999999999943
No 29
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.1e-29 Score=218.51 Aligned_cols=149 Identities=19% Similarity=0.191 Sum_probs=140.6
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
++.+|.+|.||||.|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+|
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL---EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKT 103 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCC
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc---ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCc
Confidence 5678999999999999999999999999998765 456778999999999999999999999999998 788999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 85 PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
|||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+.
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~ 176 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARI 176 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999999988 7899999999999999999999999999999999999999999999983
No 30
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.96 E-value=1.4e-29 Score=233.79 Aligned_cols=171 Identities=22% Similarity=0.192 Sum_probs=155.4
Q ss_pred CCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCC
Q 040055 4 GAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKH 83 (387)
Q Consensus 4 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 83 (387)
+++.+|.+|.||||+|++.|+.+++++|+++++++ +.. +|+||||+|+..|+.+++++|+++|+++ +.+|..|+
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~ 96 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK---NLL--ENEFPLHQAATLEDTKIVKILLFSGLDD-SQFDDKGN 96 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG---SCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT-TCCCTTSC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCC
Confidence 67889999999999999999999999999999866 323 3999999999999999999999999998 77899999
Q ss_pred hHHHHHHHhCcHHHHHHHHhhCCccccccCCCC-ChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-----
Q 040055 84 SPLHLASAEGHVQIVKELLLANKDACLVADQDG-RIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT----- 157 (387)
Q Consensus 84 tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g-~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~----- 157 (387)
||||+|+..|+.+++++|++.++++ +.+|..| .||||+|+..|+.+++++|+++|++.... ..|+||||+|+
T Consensus 97 t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~ 174 (285)
T 3kea_A 97 TALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHV 174 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCH
T ss_pred cHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChH
Confidence 9999999999999999999999888 7889999 89999999999999999999999876322 38999999998
Q ss_pred --hhhhccccccccccccccccCCCc-chHh
Q 040055 158 --TSYLLSIPQIRVDVNSLIENGFTM-LQKD 185 (387)
Q Consensus 158 --~~~ll~~~~~~~~~~~~~~~G~t~-l~~~ 185 (387)
+++|++.+ ++++.+|..|+|| |+.+
T Consensus 175 ~~v~~Ll~~g---ad~n~~~~~g~t~~L~~A 202 (285)
T 3kea_A 175 DMMILLLDYM---TSTNTNNSLLFIPDIKLA 202 (285)
T ss_dssp HHHHHHHHHH---HHTCTTCCCBCCTTHHHH
T ss_pred HHHHHHHHcC---CCCCcccCCCCChHHHHH
Confidence 77888887 8899999999998 8843
No 31
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=1.1e-28 Score=225.95 Aligned_cols=172 Identities=23% Similarity=0.217 Sum_probs=120.1
Q ss_pred CCCcc-CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 4 GAREH-DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 4 ~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
+++.+ +..|.||||+|++.|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|+++++++ +..|..|
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 105 (285)
T 1wdy_A 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP---VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV-NECDFYG 105 (285)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTC
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCccc
Confidence 44444 556777777777777777777777776654 334556777777777777777777777777776 5667777
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCcccccc----------CCCCChHHHHHHHcCCHHHHHHHHhc-CCCccccccCCCc
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVA----------DQDGRIPLHLAAMRGRVEVVQELISA-NFDSVLVKFHGDT 151 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~----------d~~g~t~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~d~~G~T 151 (387)
+||||+|+..|+.+++++|++.+.+. +.. +..|.||||+|+..|+.+++++|++. |.+++..|..|+|
T Consensus 106 ~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t 184 (285)
T 1wdy_A 106 FTAFMEAAVYGKVKALKFLYKRGANV-NLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRN 184 (285)
T ss_dssp CBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCC
T ss_pred CCHHHHHHHhCCHHHHHHHHHhCCCc-ccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence 77777777777777777777776665 333 56677777777777777777777766 7777777777777
Q ss_pred HHHHHh-----------hhhhccccccccccccccccCCCcch
Q 040055 152 VLHLCT-----------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 152 ~Lh~A~-----------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
|||+|+ +++|++.+ ++++.+|..|.||||
T Consensus 185 ~l~~a~~~~~~~~~~~i~~~Ll~~g---~~~~~~~~~g~t~L~ 224 (285)
T 1wdy_A 185 ALIHALLSSDDSDVEAITHLLLDHG---ADVNVRGERGKTPLI 224 (285)
T ss_dssp HHHHHHHCSCTTTHHHHHHHHHHTT---CCSSCCCTTSCCHHH
T ss_pred HHHHHHHccccchHHHHHHHHHHcC---CCCCCcCCCCCcHHH
Confidence 777775 33455555 667777777777777
No 32
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.96 E-value=8.2e-29 Score=210.67 Aligned_cols=138 Identities=30% Similarity=0.361 Sum_probs=126.1
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+++++.+|.+|.||||+|+..|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|.+
T Consensus 27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadv-n~~d~~ 102 (169)
T 4gpm_A 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV---NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSD 102 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch---hhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCC-CCCCCC
Confidence 5788999999999999999999999999999999876 556788999999999999999999999999998 888999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVL 144 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 144 (387)
|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+++|+.+++++|+++|++++.
T Consensus 103 G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 103 GRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence 999999999999999999999999988 78999999999999999999999999999999764
No 33
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.96 E-value=6.5e-29 Score=238.06 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=161.3
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC---Cchhhcc
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK---PELAKEL 78 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~~~~ 78 (387)
+++++.+|.+|.||||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.+++++|++++ .++ +..
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~---~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~ 231 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADP---TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EEL 231 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCC
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC---cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhc
Confidence 4678899999999999999999999999999999866 456778999999999999999999999987 565 678
Q ss_pred CCCCChHHHHHHHhC---cHHHHHHHHhhCCcccc-------ccCCCCChHHHHHHHcCCHHHHHHHHhcC-CCcccccc
Q 040055 79 DSLKHSPLHLASAEG---HVQIVKELLLANKDACL-------VADQDGRIPLHLAAMRGRVEVVQELISAN-FDSVLVKF 147 (387)
Q Consensus 79 d~~g~tpLh~Aa~~g---~~~~v~~Ll~~~~~~~~-------~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~-~~~~~~d~ 147 (387)
|..|+||||+|+..| +.+++++|++.+.++.. ..|..|+||||+|+..|+.+++++|++.+ ++++..|.
T Consensus 232 d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~ 311 (373)
T 2fo1_E 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311 (373)
T ss_dssp CTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCT
T ss_pred CCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCC
Confidence 999999999999998 89999999999987732 26778999999999999999999999886 99999999
Q ss_pred CCCcHHHHHh-------hhhhccccccccccccccccCCCcchHhH
Q 040055 148 HGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 148 ~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
+|+||||+|+ +++|++.+ ++++.+|..|+||++.+.
T Consensus 312 ~g~TpL~~A~~~g~~~iv~~Ll~~g---ad~~~~d~~g~t~l~~A~ 354 (373)
T 2fo1_E 312 DGKTPIMLAAQEGRIEVVMYLIQQG---ASVEAVDATDHTARQLAQ 354 (373)
T ss_dssp TCCCHHHHHHHHTCHHHHHHHHHTT---CCSSCCCSSSCCHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcC---CCccCCCCCCCCHHHHHH
Confidence 9999999998 77888887 889999999999999544
No 34
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.96 E-value=2.9e-29 Score=239.28 Aligned_cols=173 Identities=17% Similarity=0.196 Sum_probs=152.0
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+++.+.+|.+|.||||+|+..|+.++|++|++++.++ +..|..|+||||+|+..|+.+++++|++++++. .+.+
T Consensus 10 ~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~ 83 (364)
T 3ljn_A 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSP---TIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWH 83 (364)
T ss_dssp ------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBT
T ss_pred CCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---cccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccC
Confidence 3567788999999999999999999999999998765 556788999999999999999999999999865 2457
Q ss_pred CChHHHHHHHhCcHHHHHHHHhh----CCccccc-----------------cCCCCChHHHHHHHcC--CHHHHHHHHhc
Q 040055 82 KHSPLHLASAEGHVQIVKELLLA----NKDACLV-----------------ADQDGRIPLHLAAMRG--RVEVVQELISA 138 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~----~~~~~~~-----------------~d~~g~t~Lh~A~~~g--~~~iv~~Ll~~ 138 (387)
|+||||+|+..|+.+++++|++. +.+. +. .|.+|+||||+|+..| +.+++++|+++
T Consensus 84 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 84 GQKPIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TBCHHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 99999999999999999999998 5554 33 7889999999999999 99999999999
Q ss_pred CCCccccccCCCcHHHHHh-------hhhhccccccccc-----cccccccCCCcchH
Q 040055 139 NFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVD-----VNSLIENGFTMLQK 184 (387)
Q Consensus 139 ~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~-----~~~~~~~G~t~l~~ 184 (387)
|++++..|..|+||||+|+ +++|++.+ ++ ++..|..|.||||.
T Consensus 163 ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g---~~~~~~~~~~~~~~g~t~L~~ 217 (364)
T 3ljn_A 163 GASPTAKDKADETPLMRAMEFRNREALDLMMDTV---PSKSSLRLDYANKQGNSHLHW 217 (364)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHC---SCSSSCCTTCCCTTCCCTTHH
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcc---cccccccccccCCCCCcHHHH
Confidence 9999999999999999998 77788776 55 99999999999993
No 35
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=7.7e-29 Score=242.07 Aligned_cols=176 Identities=31% Similarity=0.390 Sum_probs=146.2
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+++++..|+.|.||||.|+..|+.++|++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~ 79 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASP---NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV-NAKAKD 79 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCS---CCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTT
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCC
Confidence 4677888999999999999999999999999998765 445677999999999999999999999999987 778899
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|+||||+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.++++.|++.+++.+..+..|.||||+|+
T Consensus 80 g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~ 158 (437)
T 1n11_A 80 DQTPLHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGK 158 (437)
T ss_dssp SCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTC
T ss_pred CCCHHHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 999999999999999999999998887 778889999999999999999999999999888888889999999998
Q ss_pred ---hhhhccccccccccccccccCCCcchHh
Q 040055 158 ---TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 158 ---~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
+++|++.+ ++++..+..|.|||+.+
T Consensus 159 ~~~v~~Ll~~g---~~~~~~~~~g~t~L~~A 186 (437)
T 1n11_A 159 VRVAELLLERD---AHPNAAGKNGLTPLHVA 186 (437)
T ss_dssp HHHHHHHHHTT---CCTTCCCSSCCCHHHHH
T ss_pred HHHHHHHHhCC---CCCCCCCCCCCCHHHHH
Confidence 66777776 77888888999998833
No 36
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=3.5e-29 Score=226.96 Aligned_cols=171 Identities=25% Similarity=0.235 Sum_probs=146.3
Q ss_pred CchHhHHHHHcCCHH----HHHHHHhcCCcccccc-cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhh-------
Q 040055 12 STHKLYEASLRGSVR----SLNTLMQNDPLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPELAK------- 76 (387)
Q Consensus 12 g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~~~-~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~------- 76 (387)
|+||||.|++.|+.+ ++++|++.+.++.... ..|..|+||||+|+.. |+.+++++|++++++...
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 789999999999997 5566667887663200 1577899999999999 999999999999876521
Q ss_pred ---ccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCC-------------CChHHHHHHHcCCHHHHHHHHh---
Q 040055 77 ---ELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD-------------GRIPLHLAAMRGRVEVVQELIS--- 137 (387)
Q Consensus 77 ---~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-------------g~t~Lh~A~~~g~~~iv~~Ll~--- 137 (387)
..|..|+||||+|+..|+.+++++|++.++++ +.+|.. |+||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~ 160 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH 160 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 23477999999999999999999999999888 667765 9999999999999999999999
Q ss_pred cCCCccccccCCCcHHHHHhh----------------hhhcccccccccc-------ccccccCCCcchHhH
Q 040055 138 ANFDSVLVKFHGDTVLHLCTT----------------SYLLSIPQIRVDV-------NSLIENGFTMLQKDL 186 (387)
Q Consensus 138 ~~~~~~~~d~~G~T~Lh~A~~----------------~~ll~~~~~~~~~-------~~~~~~G~t~l~~~~ 186 (387)
.|++++.+|.+|+||||+|+. ++|++.+ +++ +.+|..|+|||+.+.
T Consensus 161 ~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~ 229 (256)
T 2etb_A 161 QPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMG---ARLCPTVQLEEISNHQGLTPLKLAA 229 (256)
T ss_dssp CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---HHHSTTCCGGGCCCTTSCCHHHHHH
T ss_pred cCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcC---CCcccccccccccCCCCCCHHHHHH
Confidence 999999999999999999973 4566666 777 899999999999554
No 37
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=4.1e-28 Score=222.15 Aligned_cols=177 Identities=20% Similarity=0.211 Sum_probs=160.4
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhcc---
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKEL--- 78 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~--- 78 (387)
+++++.+|.+|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++++ +..
T Consensus 62 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 137 (285)
T 1wdy_A 62 GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADV---NECDFYGFTAFMEAAVYGKVKALKFLYKRGANV-NLRRKT 137 (285)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT---TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCC
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCc-cccccc
Confidence 4577888999999999999999999999999999866 456778999999999999999999999999887 444
Q ss_pred -------CCCCChHHHHHHHhCcHHHHHHHHhh-CCccccccCCCCChHHHHHHHcCC----HHHHHHHHhcCCCccccc
Q 040055 79 -------DSLKHSPLHLASAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLAAMRGR----VEVVQELISANFDSVLVK 146 (387)
Q Consensus 79 -------d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~g~----~~iv~~Ll~~~~~~~~~d 146 (387)
+..|.||||+|+..|+.+++++|++. +.++ +..|..|+||||+|+..++ .+++++|+++|++++.+|
T Consensus 138 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~ 216 (285)
T 1wdy_A 138 KEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRG 216 (285)
T ss_dssp CHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCC
T ss_pred HHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcC
Confidence 78899999999999999999999998 6665 7899999999999999999 999999999999999999
Q ss_pred cCCCcHHHHHh-------hhhhcc-ccccccccccccccCCCcchHhH
Q 040055 147 FHGDTVLHLCT-------TSYLLS-IPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 147 ~~G~T~Lh~A~-------~~~ll~-~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
.+|+||||+|+ +++|++ .+ ++++.+|..|+||++.+.
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g---~~~~~~~~~g~t~l~~A~ 261 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQEH---IEINDTDSDGKTALLLAV 261 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSS---CCTTCCCTTSCCHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhccC---CCccccCCCCCcHHHHHH
Confidence 99999999998 667777 55 789999999999999544
No 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.96 E-value=2.3e-28 Score=217.96 Aligned_cols=162 Identities=20% Similarity=0.241 Sum_probs=144.0
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCccccc--ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRK--TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD 79 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d 79 (387)
+.+++.+|.+|.||||+|+..|+.+++++|++.+++.... ...|..|+||||+|+..|+.+++++|+++++++ +..+
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~ 105 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASV-SARA 105 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCC-Cccc
Confidence 4678899999999999999999999999999999865332 345678999999999999999999999999988 4544
Q ss_pred C-------------CCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHH----HHHHhcCCCc
Q 040055 80 S-------------LKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVV----QELISANFDS 142 (387)
Q Consensus 80 ~-------------~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv----~~Ll~~~~~~ 142 (387)
. .|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++ ++|+++|++.
T Consensus 106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~ 184 (232)
T 2rfa_A 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGD 184 (232)
T ss_dssp CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSC
T ss_pred CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCch
Confidence 4 7999999999999999999999999988 78999999999999999999988 9999999988
Q ss_pred ------cccccCCCcHHHHHh-------hhhhcccc
Q 040055 143 ------VLVKFHGDTVLHLCT-------TSYLLSIP 165 (387)
Q Consensus 143 ------~~~d~~G~T~Lh~A~-------~~~ll~~~ 165 (387)
+..|..|+||||+|+ +++|++.+
T Consensus 185 ~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g 220 (232)
T 2rfa_A 185 HLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKR 220 (232)
T ss_dssp SSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred hhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence 477999999999998 55566555
No 39
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.96 E-value=1.3e-28 Score=207.97 Aligned_cols=146 Identities=26% Similarity=0.352 Sum_probs=134.6
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
.|.+|.+|||.|++.|+.++++.|++.++. .....+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~--~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSV--NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCC--CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHH
Confidence 578899999999999999999999997653 33445677999999999999999999999999998 788999999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~ 149 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSC
T ss_pred HHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHh
Confidence 999999999999999999988 789999999999999999999999999999999999999999999986
No 40
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=99.96 E-value=2.6e-28 Score=238.35 Aligned_cols=174 Identities=26% Similarity=0.334 Sum_probs=137.9
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++..|.+|.||||.|+..|+.+++++|++++... ...+..|.||||+|+..|+.++++.|++++.++ +..+..
T Consensus 169 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 244 (437)
T 1n11_A 169 DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP---HSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA-NAESVQ 244 (437)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCS---CCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCC
Confidence 3566777888888888888888888888888887754 334566788888888888888888888888776 666777
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|.||||+|+..|+.+++++|++.+++. +..|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 245 g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~ 323 (437)
T 1n11_A 245 GVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGN 323 (437)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSC
T ss_pred CCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCc
Confidence 888888888888888888888877776 667778888888888888888888888888888877888888888887
Q ss_pred ---hhhhccccccccccccccccCCCcch
Q 040055 158 ---TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 158 ---~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
+++|++.+ +++|.+|..|+||||
T Consensus 324 ~~~v~~Ll~~g---ad~n~~~~~g~t~L~ 349 (437)
T 1n11_A 324 IKLVKFLLQHQ---ADVNAKTKLGYSPLH 349 (437)
T ss_dssp SHHHHHHHHTT---CCTTCCCTTSCCHHH
T ss_pred HHHHHHHHhcC---CCCCCCCCCCCCHHH
Confidence 66777776 777888888888887
No 41
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=2.3e-28 Score=207.01 Aligned_cols=142 Identities=24% Similarity=0.288 Sum_probs=134.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
+|.||||.|++.|+.++++.|++.+..+ +..+..|+||||+|+..|+.+++++|+++++++ +..|..|+||||+|+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 77 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI---NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLAC 77 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHH
Confidence 6889999999999999999999998765 556778999999999999999999999999998 778999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 78 SKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAV 143 (167)
T ss_dssp HHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHH
Confidence 999999999999999988 788999999999999999999999999999999999999999999998
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=3e-28 Score=212.25 Aligned_cols=153 Identities=19% Similarity=0.249 Sum_probs=139.5
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcC-CchhhccCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHK-PELAKELDSL 81 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~-~~~~~~~d~~ 81 (387)
.+++.+|.+|.||||+|++.|+.+++++|+++++++ +..+..|+||||+|+..|+.++++.|++.+ .++ +..|..
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~ 105 (201)
T 3hra_A 30 YQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI---NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDL-NKHNRY 105 (201)
T ss_dssp CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT-TCCCTT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccc-ccccCC
Confidence 367889999999999999999999999999999866 456778999999999999999999999554 455 788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC-----HHHHHHHHhcCCCccccccCCCcHHHHH
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-----VEVVQELISANFDSVLVKFHGDTVLHLC 156 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-----~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A 156 (387)
|.||||+|+..|+.+++++|++.++...+.+|..|+||||+|+..++ .+++++|+++|++++..|.+|+||||+|
T Consensus 106 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 185 (201)
T 3hra_A 106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYA 185 (201)
T ss_dssp SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHH
Confidence 99999999999999999999999944448899999999999999998 9999999999999999999999999999
Q ss_pred hhh
Q 040055 157 TTS 159 (387)
Q Consensus 157 ~~~ 159 (387)
+..
T Consensus 186 ~~~ 188 (201)
T 3hra_A 186 NQK 188 (201)
T ss_dssp HHH
T ss_pred HHc
Confidence 843
No 43
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.96 E-value=2.8e-28 Score=209.07 Aligned_cols=161 Identities=18% Similarity=0.287 Sum_probs=141.3
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHH
Q 040055 10 EDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (387)
Q Consensus 10 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 89 (387)
.++.++||.|++.|+.++++.|++.++.. .+..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTEND--LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSC--TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 56889999999999999999999986532 3456778999999999999999999999999998 78899999999999
Q ss_pred HHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhc
Q 040055 90 SAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLL 162 (387)
Q Consensus 90 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll 162 (387)
+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+ ++.|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988 789999999999999999999999999999999999999999999998 55666
Q ss_pred ccccccccccccccc
Q 040055 163 SIPQIRVDVNSLIEN 177 (387)
Q Consensus 163 ~~~~~~~~~~~~~~~ 177 (387)
+.+ ++++..+.+
T Consensus 159 ~~g---~~~~~~~~~ 170 (179)
T 3f6q_A 159 KMG---QNLNRIPYK 170 (179)
T ss_dssp HTT---CCCSCBCCC
T ss_pred Hhh---cCcccCCcc
Confidence 666 555554443
No 44
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=4.3e-28 Score=205.95 Aligned_cols=146 Identities=33% Similarity=0.488 Sum_probs=135.4
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
....+.++|++|++.|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +..|..|+||||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 85 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADV---NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLR 85 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHH
Confidence 4556889999999999999999999999866 456778999999999999999999999999998 788999999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+.
T Consensus 86 ~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 86 LAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISID 155 (169)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 999999999999999999988 7889999999999999999999999999999999999999999999983
No 45
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.96 E-value=3.7e-28 Score=216.94 Aligned_cols=174 Identities=25% Similarity=0.283 Sum_probs=155.4
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
++..|+.|.++||.|++.|+.+++++|++.+.++ +..+..|.||||+|+..|+.+++++|++++++.....+..|+|
T Consensus 2 ~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t 78 (240)
T 3eu9_A 2 MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDV---RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNST 78 (240)
T ss_dssp CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBC
T ss_pred ccccccccchHHHHHHHcCChHHHHHHHHcCCCc---CCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCC
Confidence 4567889999999999999999999999998765 4457789999999999999999999999999886666677999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------
Q 040055 85 PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT------- 157 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~------- 157 (387)
|||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~ 157 (240)
T 3eu9_A 79 PLHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVD 157 (240)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSST
T ss_pred hhHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHH
Confidence 999999999999999999998887 778999999999999999999999999999999999999999999998
Q ss_pred -hhhhccccccccccccccc-cCCCcchHh
Q 040055 158 -TSYLLSIPQIRVDVNSLIE-NGFTMLQKD 185 (387)
Q Consensus 158 -~~~ll~~~~~~~~~~~~~~-~G~t~l~~~ 185 (387)
+++|++.+ ++++..+. .|.|||+.+
T Consensus 158 ~~~~L~~~~---~~~~~~~~~~g~t~L~~A 184 (240)
T 3eu9_A 158 PTRLLLTFN---VSVNLGDKYHKNTALHWA 184 (240)
T ss_dssp THHHHHHTT---CCTTCCCTTTCCCHHHHH
T ss_pred HHHHHHhcC---CCcchhhccCCCcHHHHH
Confidence 44566666 77888887 999999943
No 46
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=5.6e-29 Score=227.88 Aligned_cols=180 Identities=20% Similarity=0.229 Sum_probs=146.5
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhc----CCcccccc-cCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCch
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQN----DPLILRKT-SLTSLRETPLHISALL---GHLDFTKALLNHKPEL 74 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~~~-~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~ 74 (387)
...+..|.+|.||||.|++.|+.++|+.|++. +..+.... ..+..|+||||+|+.. |+.+++++|++++++.
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 45677899999999999999999999999874 43332111 2467899999999987 9999999999997652
Q ss_pred h------h----ccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCC--------------CCChHHHHHHHcCCHH
Q 040055 75 A------K----ELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQ--------------DGRIPLHLAAMRGRVE 130 (387)
Q Consensus 75 ~------~----~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~--------------~g~t~Lh~A~~~g~~~ 130 (387)
. + ..|..|+||||+|+..|+.+++++|++.++++ +.++. .|+||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 1 1 25678999999999999999999999999888 66665 7999999999999999
Q ss_pred HHHHHHh---cCCCccccccCCCcHHHHHhh----------------hhhccccccccccc-------cccccCCCcchH
Q 040055 131 VVQELIS---ANFDSVLVKFHGDTVLHLCTT----------------SYLLSIPQIRVDVN-------SLIENGFTMLQK 184 (387)
Q Consensus 131 iv~~Ll~---~~~~~~~~d~~G~T~Lh~A~~----------------~~ll~~~~~~~~~~-------~~~~~G~t~l~~ 184 (387)
++++|++ .|++++.+|.+|+||||+|+. ++|++.+ ++++ .+|..|+|||+.
T Consensus 163 ~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a~~n~~~~~~~~~d~~g~TpL~~ 239 (273)
T 2pnn_A 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG---AKLHPTLKLEEITNRKGLTPLAL 239 (273)
T ss_dssp HHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHH---HHHCTTCCGGGCCCTTSCCHHHH
T ss_pred HHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhh---hhcccccccccccCCCCCCHHHH
Confidence 9999999 999999999999999999983 2466666 6675 589999999995
Q ss_pred hH
Q 040055 185 DL 186 (387)
Q Consensus 185 ~~ 186 (387)
+.
T Consensus 240 A~ 241 (273)
T 2pnn_A 240 AA 241 (273)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 47
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=3.4e-28 Score=204.65 Aligned_cols=142 Identities=27% Similarity=0.393 Sum_probs=132.0
Q ss_pred CCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHH
Q 040055 10 EDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLA 89 (387)
Q Consensus 10 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~A 89 (387)
+...||||.|++.|+.+++++|++++.++ +..+..|+||||+|+. |+.+++++|+++++++ +.+|..|+||||+|
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 77 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNV---NAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDA 77 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCT---TCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCc---cccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 45789999999999999999999998765 4567889999999999 9999999999999998 78899999999999
Q ss_pred HHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC-ccccccCCCcHHHHHh
Q 040055 90 SAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD-SVLVKFHGDTVLHLCT 157 (387)
Q Consensus 90 a~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~-~~~~d~~G~T~Lh~A~ 157 (387)
+..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|+++|++ .+..|..|+||||+|+
T Consensus 78 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~ 145 (162)
T 1ihb_A 78 ARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLAR 145 (162)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHH
Confidence 9999999999999999887 78999999999999999999999999999998 5888999999999998
No 48
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.95 E-value=6.7e-28 Score=215.25 Aligned_cols=178 Identities=26% Similarity=0.321 Sum_probs=161.5
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||.|++.|+.+++++|+++++..... .+..|+||||+|+..|+.++++.|+++++++ +.+|..
T Consensus 32 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~--~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 108 (240)
T 3eu9_A 32 GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQL--GGDLNSTPLHWATRQGHLSMVVQLMKYGADP-SLIDGE 108 (240)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC--BTTTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhh--cCCcCCChhHHHHHcCCHHHHHHHHHcCCCC-cccCCC
Confidence 4678889999999999999999999999999999866433 3445899999999999999999999999998 778999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCC-HHHHHHHHhcCCCcccccc-CCCcHHHHHh--
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGR-VEVVQELISANFDSVLVKF-HGDTVLHLCT-- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~-~~iv~~Ll~~~~~~~~~d~-~G~T~Lh~A~-- 157 (387)
|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..++ .+++++|++.|++++..+. .|+||||+|+
T Consensus 109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~ 187 (240)
T 3eu9_A 109 GCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187 (240)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHH
T ss_pred CCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHc
Confidence 999999999999999999999999887 7889999999999997776 8999999999999999986 9999999998
Q ss_pred -----hhhhccccccccccccccccCCCcchHhH
Q 040055 158 -----TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 158 -----~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
+++|++.+ ++++.+|..|+||++.+.
T Consensus 188 ~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~ 218 (240)
T 3eu9_A 188 GNTTVISLLLEAG---ANVDAQNIKGESALDLAK 218 (240)
T ss_dssp TCHHHHHHHHHHT---CCTTCBCTTSCBHHHHHH
T ss_pred CCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHH
Confidence 77888887 889999999999999544
No 49
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.95 E-value=3.1e-29 Score=224.10 Aligned_cols=174 Identities=15% Similarity=0.080 Sum_probs=154.5
Q ss_pred CccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChH
Q 040055 6 REHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP 85 (387)
Q Consensus 6 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 85 (387)
+..+.+|.||||.|++.|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||
T Consensus 15 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tp 90 (229)
T 2vge_A 15 RRARLNPLVLLLDAALTGELEVVQQAVKEMNDP---SQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTP 90 (229)
T ss_dssp CCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCH
T ss_pred cccccchhHHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCH
Confidence 445667899999999999999999999999865 556788999999999999999999999999998 7889999999
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccccC-CCCChHHHHH--HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----h
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLA--AMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT----T 158 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~----~ 158 (387)
||+|+..|+.+++++|++.++++ +..+ .+|+||||+| +..|+.+++++|+++|++++..|..|.||+|.++ .
T Consensus 91 Lh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~ 169 (229)
T 2vge_A 91 LHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD 169 (229)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc
Confidence 99999999999999999999998 5554 6999999999 9999999999999999999999999999999665 4
Q ss_pred hhhccccccccccccccccCCCcchHh
Q 040055 159 SYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 159 ~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
+.+++.+. ..+++.+|.+|+|||+.+
T Consensus 170 ~~ll~~ga-~~~~~~~d~~G~TpL~~A 195 (229)
T 2vge_A 170 ELSFREGE-SVTVLRRDGPEETDWWWA 195 (229)
T ss_dssp BCCBCTTC-EEEEEESSCTTCSSEEEE
T ss_pred ccCccccc-cccccccCCCcccHHHHH
Confidence 56666652 234888999999999943
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=1.2e-28 Score=223.50 Aligned_cols=162 Identities=20% Similarity=0.154 Sum_probs=142.4
Q ss_pred CCCCCc----cCCCCchHhHHHHHc---CCHHHHHHHHhcCCcccccc--------cCCCCCCcHHHHHHHcCCHHHHHH
Q 040055 2 EIGARE----HDEDSTHKLYEASLR---GSVRSLNTLMQNDPLILRKT--------SLTSLRETPLHISALLGHLDFTKA 66 (387)
Q Consensus 2 ~~~~~~----~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~--------~~~~~g~tpLh~Aa~~g~~~~v~~ 66 (387)
+++++. +|.+|.||||+|+.. |+.+++++|++.+++..... ..|..|+||||+|+..|+.+++++
T Consensus 29 g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~ 108 (256)
T 2etb_A 29 SKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKL 108 (256)
T ss_dssp TCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHH
T ss_pred CCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHH
Confidence 356676 899999999999999 99999999999887553221 234679999999999999999999
Q ss_pred HHhcCCchhhccCCC-------------CChHHHHHHHhCcHHHHHHHHh---hCCccccccCCCCChHHHHHHH--cCC
Q 040055 67 LLNHKPELAKELDSL-------------KHSPLHLASAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAM--RGR 128 (387)
Q Consensus 67 Ll~~~~~~~~~~d~~-------------g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~--~g~ 128 (387)
|+++|+++ +.+|.. |+||||+|+..|+.+++++|++ .+.++ +.+|.+|+||||+|+. .++
T Consensus 109 Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~ 186 (256)
T 2etb_A 109 LVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNS 186 (256)
T ss_dssp HHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSC
T ss_pred HHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCC
Confidence 99999998 666765 9999999999999999999999 88887 7899999999999999 888
Q ss_pred HH-------HHHHHHhcCCCc-------cccccCCCcHHHHHh-------hhhhcccc
Q 040055 129 VE-------VVQELISANFDS-------VLVKFHGDTVLHLCT-------TSYLLSIP 165 (387)
Q Consensus 129 ~~-------iv~~Ll~~~~~~-------~~~d~~G~T~Lh~A~-------~~~ll~~~ 165 (387)
.+ ++++|+++|+++ +.+|..|+||||+|+ +++|++.+
T Consensus 187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 244 (256)
T 2etb_A 187 PENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE 244 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence 88 999999999999 888999999999998 55566554
No 51
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=8.9e-28 Score=200.50 Aligned_cols=143 Identities=29% Similarity=0.353 Sum_probs=133.9
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
|..++||.|++.|+.+++++|+++++... .+..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g~~~~----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 75 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAA 75 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHTCCCC----CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcCCCCC----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 45789999999999999999999988542 4677999999999999999999999999998 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhh
Q 040055 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTS 159 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~~ 159 (387)
..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..
T Consensus 76 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 143 (153)
T 1awc_B 76 SEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN 143 (153)
T ss_dssp HHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc
Confidence 999999999999999888 78999999999999999999999999999999999999999999999854
No 52
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.95 E-value=1.6e-27 Score=211.06 Aligned_cols=160 Identities=20% Similarity=0.199 Sum_probs=146.0
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||.|+..|+.+++++|++.++.. .+..+..|.||||+|+..|+.++++.|+++++++ +..|..
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 124 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDL 124 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCC
Confidence 4677889999999999999999999999999998732 2445677999999999999999999999999998 788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh----
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT---- 157 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~---- 157 (387)
|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 203 (223)
T 2f8y_A 125 GKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMH 203 (223)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHHHHHHhcc
Confidence 999999999999999999999999888 788999999999999999999999999999999999999999999998
Q ss_pred ---hhhhcccc
Q 040055 158 ---TSYLLSIP 165 (387)
Q Consensus 158 ---~~~ll~~~ 165 (387)
+++|++.+
T Consensus 204 ~~i~~~L~~~g 214 (223)
T 2f8y_A 204 HDIVRLLDEYN 214 (223)
T ss_dssp HHHHHHHHHTT
T ss_pred hHHHHHHHHcC
Confidence 45555554
No 53
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.95 E-value=2e-28 Score=234.68 Aligned_cols=176 Identities=18% Similarity=0.207 Sum_probs=155.4
Q ss_pred CCCCccC-CCCchHhHHHHHcCCHHHHHHHH--------hcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCc
Q 040055 3 IGAREHD-EDSTHKLYEASLRGSVRSLNTLM--------QNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPE 73 (387)
Q Consensus 3 ~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll--------~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 73 (387)
.+++.+| ..|.||||+|+..|+.++++.|+ +.+.++ +..|..|+||||+|+..|+.+++++|+++|++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v---n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~ 191 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV---NAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC---cCCCCCCCCHHHHHHHcChHHHHHHHHHCCCC
Confidence 4667788 78999999999999998888776 677755 55678899999999999999999999999999
Q ss_pred hhhccCCCCChHHHHHHHhCcHHHHHHHHhhC---CccccccCCCCChHHHHHHHcC---CHHHHHHHHhcCCCccc---
Q 040055 74 LAKELDSLKHSPLHLASAEGHVQIVKELLLAN---KDACLVADQDGRIPLHLAAMRG---RVEVVQELISANFDSVL--- 144 (387)
Q Consensus 74 ~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~---~~~~~~~d~~g~t~Lh~A~~~g---~~~iv~~Ll~~~~~~~~--- 144 (387)
+ +..|..|+||||+|+..|+.+++++|++.+ .++ +..|.+|+||||+|+..+ +.+++++|+++|++++.
T Consensus 192 ~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~ 269 (373)
T 2fo1_E 192 P-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDI-EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGA 269 (373)
T ss_dssp S-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTT-SCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSG
T ss_pred C-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccCh-hhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccc
Confidence 8 788999999999999999999999999987 455 678999999999999998 89999999999999886
Q ss_pred -----cccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchHh
Q 040055 145 -----VKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 145 -----~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
.|..|+||||+|+ +++|++.+. ++++.+|..|.|||+.+
T Consensus 270 ~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~n~~d~~g~TpL~~A 320 (373)
T 2fo1_E 270 ARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG--SNKDKQDEDGKTPIMLA 320 (373)
T ss_dssp GGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC--CCTTCCCTTCCCHHHHH
T ss_pred cccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC--CCccCcCCCCCCHHHHH
Confidence 4779999999998 677776542 67999999999999943
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=2.6e-28 Score=221.56 Aligned_cols=174 Identities=22% Similarity=0.204 Sum_probs=146.1
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHh----cCCcccccc-cCCCCCCcHHHHHH---HcCCHHHHHHHHhcCCch------
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQ----NDPLILRKT-SLTSLRETPLHISA---LLGHLDFTKALLNHKPEL------ 74 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~-~~~~~g~tpLh~Aa---~~g~~~~v~~Ll~~~~~~------ 74 (387)
+..|.++||.|++.|+.+.++.|++ .+..+...+ ..+..|+||||+|+ +.|+.++++.|++.+++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 4568999999999999996665555 777664332 23467999999999 779999999999987542
Q ss_pred ----hhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccC--------------CCCChHHHHHHHcCCHHHHHHHH
Q 040055 75 ----AKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD--------------QDGRIPLHLAAMRGRVEVVQELI 136 (387)
Q Consensus 75 ----~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d--------------~~g~t~Lh~A~~~g~~~iv~~Ll 136 (387)
....|..|+||||+|+..|+.+++++|++.++++ +.+| ..|+||||+|+..|+.+++++|+
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 1334558999999999999999999999999888 6666 58999999999999999999999
Q ss_pred h---cCCCccccccCCCcHHHHHh----------------hhhhcccccccccc-------ccccccCCCcchHhH
Q 040055 137 S---ANFDSVLVKFHGDTVLHLCT----------------TSYLLSIPQIRVDV-------NSLIENGFTMLQKDL 186 (387)
Q Consensus 137 ~---~~~~~~~~d~~G~T~Lh~A~----------------~~~ll~~~~~~~~~-------~~~~~~G~t~l~~~~ 186 (387)
+ .|++++.+|.+|+||||+|+ +++|++.+ +++ +.+|..|+|||+.+.
T Consensus 161 ~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~g---a~~~~~~~~~~~~d~~g~tpL~~A~ 233 (260)
T 3jxi_A 161 ENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC---AKLFPDTNLEALLNNDGLSPLMMAA 233 (260)
T ss_dssp HCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHH---HHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred hccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhC---cccccccchhhcccCCCCCHHHHHH
Confidence 9 99999999999999999998 23466666 666 789999999999554
No 55
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=4.5e-28 Score=228.09 Aligned_cols=168 Identities=16% Similarity=0.078 Sum_probs=132.9
Q ss_pred CCCCCc-cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCC---HHHHHHHHhcC-Cchhh
Q 040055 2 EIGARE-HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGH---LDFTKALLNHK-PELAK 76 (387)
Q Consensus 2 ~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~---~~~v~~Ll~~~-~~~~~ 76 (387)
+++++. +|.+|.||||+|+..|+.++|++|+++++++ +..|..|+||||+|+..|+ .++++.|++.+ +++ +
T Consensus 120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~---n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~-~ 195 (327)
T 1sw6_A 120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR---LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-I 195 (327)
T ss_dssp CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG-G
T ss_pred CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc-c
Confidence 367788 8999999999999999999999999999876 4567889999999999998 67788888876 444 7
Q ss_pred ccCCCCChHHHHHHH----hCcHHHHHHHHhh--------------------CCccccccCCCCChHHHHHHHcCCHHHH
Q 040055 77 ELDSLKHSPLHLASA----EGHVQIVKELLLA--------------------NKDACLVADQDGRIPLHLAAMRGRVEVV 132 (387)
Q Consensus 77 ~~d~~g~tpLh~Aa~----~g~~~~v~~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~g~~~iv 132 (387)
.+|..|+||||+|+. .|+.++++.|++. +.++ +.+|..|+||||.|+. +
T Consensus 196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~-~~~~~~g~t~L~~a~~------~ 268 (327)
T 1sw6_A 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKP-NDKNGERKDSILENLD------L 268 (327)
T ss_dssp EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------H
T ss_pred CCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCc-ccccccCCChhHHHHH------H
Confidence 889999999999999 8999999999887 4455 6678888888888875 7
Q ss_pred HHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchHh
Q 040055 133 QELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKD 185 (387)
Q Consensus 133 ~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~ 185 (387)
++|+++ +++.+|.+|+||||+|+ +++|++.+ ++++.+|.+|+||||.+
T Consensus 269 ~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~G---ad~~~~d~~G~TpL~~A 323 (327)
T 1sw6_A 269 KWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLDYG---ADPFIANKSGLRPVDFG 323 (327)
T ss_dssp HHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTT---CCTTCCCTTSCCGGGGT
T ss_pred HHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCcccCCCCCCHHHHH
Confidence 788887 57777888889998888 67788777 88888888888888843
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=9.2e-28 Score=220.57 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=121.5
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCC-cccccccCCCCCCcHHHHHH-----HcCCHHHHHHHHhcCCchhhcc
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDP-LILRKTSLTSLRETPLHISA-----LLGHLDFTKALLNHKPELAKEL 78 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~~~g~tpLh~Aa-----~~g~~~~v~~Ll~~~~~~~~~~ 78 (387)
+|.+|.+|.||||+|++.|+.+++++|++.++ ++ +..+..|+||||+|+ ..++.++++.|++.+... ...
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~---~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~ 179 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV---DKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKA 179 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT---TCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCC
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC---CCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-ccc
Confidence 56778888888888888888888888888886 33 445667888888888 557788888888888766 666
Q ss_pred CCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHh-cCCCccccccCCCcHHHHHh
Q 040055 79 DSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELIS-ANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 79 d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~-~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++ .|++++..|.+|+||||+|+
T Consensus 180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~-n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~ 258 (276)
T 4hbd_A 180 SQAGQTALMLAVSHGRVDVVKALLACEADV-NVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVAL 258 (276)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHH
Confidence 778888888888888888888888888877 7788888888888888888888888888 78888888888888888887
No 57
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.95 E-value=7.2e-28 Score=220.46 Aligned_cols=170 Identities=19% Similarity=0.217 Sum_probs=138.3
Q ss_pred ccCCCCchHhHHHHHc---CCHHHHHHHHhcCCccc------c--cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchh
Q 040055 7 EHDEDSTHKLYEASLR---GSVRSLNTLMQNDPLIL------R--KTSLTSLRETPLHISALLGHLDFTKALLNHKPELA 75 (387)
Q Consensus 7 ~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~------~--~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~ 75 (387)
.+|.+|.||||+|+.. |+.+++++|++.+++.. + ....|..|+||||+|+..|+.+++++|+++|+++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~- 127 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV- 127 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-
Confidence 3588999999999987 99999999999876421 1 1224567999999999999999999999999998
Q ss_pred hccCC--------------CCChHHHHHHHhCcHHHHHHHHh---hCCccccccCCCCChHHHHHHHcCC---------H
Q 040055 76 KELDS--------------LKHSPLHLASAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------V 129 (387)
Q Consensus 76 ~~~d~--------------~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~ 129 (387)
+.++. .|+||||+|+..|+.+++++|++ .+.++ +.+|.+|+||||+|+..|+ .
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~-~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 206 (273)
T 2pnn_A 128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADI-SARDSVGNTVLHALVEVADNTVDNTKFVT 206 (273)
T ss_dssp TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCc-eeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence 66665 79999999999999999999999 78887 7899999999999999998 8
Q ss_pred HHHHHHHhcCCCcc-------ccccCCCcHHHHHh-------hhhhcccccccc-ccccccccCCCc
Q 040055 130 EVVQELISANFDSV-------LVKFHGDTVLHLCT-------TSYLLSIPQIRV-DVNSLIENGFTM 181 (387)
Q Consensus 130 ~iv~~Ll~~~~~~~-------~~d~~G~T~Lh~A~-------~~~ll~~~~~~~-~~~~~~~~G~t~ 181 (387)
+++++|+++|++++ ..|.+|+||||+|+ +++|++.+ + |.......+.+|
T Consensus 207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g---a~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQRE---IHEPECRHAAAHHH 270 (273)
T ss_dssp HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---TC------------
T ss_pred HHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCC---CCCchhhhhhhhhc
Confidence 99999999999986 47999999999998 66777776 3 455555555444
No 58
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.95 E-value=2e-27 Score=224.27 Aligned_cols=140 Identities=29% Similarity=0.343 Sum_probs=125.1
Q ss_pred ccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHH
Q 040055 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (387)
Q Consensus 7 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 86 (387)
.+++.+.++||.|++.|+.+.++.|+...+. +.+..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|||
T Consensus 19 ~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L 95 (351)
T 3utm_A 19 LTGEYKKDELLEAARSGNEEKLMALLTPLNV--NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHCCTTTT--TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred eeccccchhHHHHHHcCCHHHHHHHHHhcCC--CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCcHH
Confidence 3466789999999999999999999987442 23456788999999999999999999999999998 78899999999
Q ss_pred HHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC
Q 040055 87 HLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGD 150 (387)
Q Consensus 87 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~ 150 (387)
|+|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|++++..|..|.
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~ 158 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGK 158 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCC
Confidence 9999999999999999999888 78899999999999999999999999999999876654443
No 59
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.95 E-value=4.6e-27 Score=217.54 Aligned_cols=110 Identities=25% Similarity=0.277 Sum_probs=99.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 040055 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124 (387)
Q Consensus 45 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 124 (387)
+..|.||||.|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~ 114 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA 114 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHCCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHH
Confidence 445889999999999999999999999998 788999999999999999999999999999888 788999999999999
Q ss_pred HcCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 040055 125 MRGRVEVVQELISANFDSVLVKFHGDTVLHLC 156 (387)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A 156 (387)
..|+.+++++|+++|++++..|.+|.||||+|
T Consensus 115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A 146 (299)
T 1s70_B 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIA 146 (299)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHH
Confidence 99999999999999999887766555555444
No 60
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=8.5e-28 Score=201.44 Aligned_cols=150 Identities=25% Similarity=0.238 Sum_probs=117.3
Q ss_pred CCCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCC
Q 040055 1 MEIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDS 80 (387)
Q Consensus 1 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~ 80 (387)
||-..+..++.|.||||+|++.|+.+++++|++++.++ +..+..|+||||+|+ .|+.+++++|+++++++ +.+|.
T Consensus 1 mep~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~ 75 (156)
T 1bi7_B 1 MEPAAGSSMEPSADWLATAAARGRVEEVRALLEAGANP---NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADP 75 (156)
T ss_dssp ---------CCSTTHHHHHHHHTCHHHHHHHHTTTCCT---TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCT
T ss_pred CCCCccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCC
Confidence 45667788999999999999999999999999998765 456778999999985 99999999999999998 78899
Q ss_pred CCCh-HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHH
Q 040055 81 LKHS-PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLC 156 (387)
Q Consensus 81 ~g~t-pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A 156 (387)
.|+| |||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|.||.+.+
T Consensus 76 ~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 76 ATLTRPVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred CCCcHHHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccccC
Confidence 9999 999999999999999999999988 78999999999999999999999999999999999999999997643
No 61
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=5.1e-27 Score=196.22 Aligned_cols=142 Identities=26% Similarity=0.373 Sum_probs=130.8
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
++.||||.|++.|+.++++.|++..+ .+.+..+..|+||||+ +..|+.++++.|+++|+++ +.+|..|+||||+|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~--~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 76 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHREL--VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAA 76 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTC--CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhC--cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHH
Confidence 36799999999999999999999832 1335567889999999 9999999999999999998 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
..|+.+++++|++.+.++ +.+|.+|+||||+|+..|+.+++++|++. ++++..|.+|+||||+|+.
T Consensus 77 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~ 142 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQ 142 (156)
T ss_dssp HTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHH
Confidence 999999999999999887 78999999999999999999999999999 9999999999999999983
No 62
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.95 E-value=1.5e-27 Score=220.24 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=147.6
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
++++.+ +|.||||+|+..|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus 55 ~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g 128 (285)
T 3kea_A 55 ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLDD---SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTG 128 (285)
T ss_dssp GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSG
T ss_pred CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCCC---CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-CccCCCC
Confidence 344444 5999999999999999999999999876 456778999999999999999999999999998 7889999
Q ss_pred -ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcH-HHHHh---
Q 040055 83 -HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTV-LHLCT--- 157 (387)
Q Consensus 83 -~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~-Lh~A~--- 157 (387)
.||||+|+..|+.+++++|++.+++... ...|+||||+|+..|+.+++++|+++|++++..|..|+|| ||+|+
T Consensus 129 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~ 206 (285)
T 3kea_A 129 WKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNK 206 (285)
T ss_dssp GGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcC
Confidence 7999999999999999999999987621 2289999999999999999999999999999999999998 99998
Q ss_pred ----hhhhccccccccccccccccC
Q 040055 158 ----TSYLLSIPQIRVDVNSLIENG 178 (387)
Q Consensus 158 ----~~~ll~~~~~~~~~~~~~~~G 178 (387)
+++|++.+ ++++..|..+
T Consensus 207 ~~~~v~~Ll~~g---ad~~~~~~~a 228 (285)
T 3kea_A 207 DIEMLQALFKYD---INIYSANLEN 228 (285)
T ss_dssp CHHHHHHHTTSC---BCSTTTTGGG
T ss_pred CHHHHHHHHHcC---CCCCCCChhh
Confidence 77888887 8888888643
No 63
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=1.2e-27 Score=217.24 Aligned_cols=155 Identities=16% Similarity=0.137 Sum_probs=135.2
Q ss_pred CCCCchHhHHHH---HcCCHHHHHHHHhcCCcccc--------cccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhc
Q 040055 9 DEDSTHKLYEAS---LRGSVRSLNTLMQNDPLILR--------KTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE 77 (387)
Q Consensus 9 d~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~--------~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~ 77 (387)
|.+|.||||+|+ +.|+.+++++|++.++.... ....|..|+||||+|+..|+.+++++|+++|+++ +.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-Cc
Confidence 377999999999 77999999999998754211 1233457999999999999999999999999998 66
Q ss_pred cC--------------CCCChHHHHHHHhCcHHHHHHHHh---hCCccccccCCCCChHHHHHHHcCC---------HHH
Q 040055 78 LD--------------SLKHSPLHLASAEGHVQIVKELLL---ANKDACLVADQDGRIPLHLAAMRGR---------VEV 131 (387)
Q Consensus 78 ~d--------------~~g~tpLh~Aa~~g~~~~v~~Ll~---~~~~~~~~~d~~g~t~Lh~A~~~g~---------~~i 131 (387)
.| ..|+||||+|+..|+.+++++|++ .+.++ +.+|.+|+||||+|+..++ .++
T Consensus 122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~ 200 (260)
T 3jxi_A 122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKM 200 (260)
T ss_dssp CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence 66 589999999999999999999999 78887 7899999999999999888 799
Q ss_pred HHHHHhcCCCc-------cccccCCCcHHHHHh-------hhhhcccc
Q 040055 132 VQELISANFDS-------VLVKFHGDTVLHLCT-------TSYLLSIP 165 (387)
Q Consensus 132 v~~Ll~~~~~~-------~~~d~~G~T~Lh~A~-------~~~ll~~~ 165 (387)
+++|+++|+++ +..|.+|+||||+|+ +++|++++
T Consensus 201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g 248 (260)
T 3jxi_A 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence 99999999988 678999999999998 55666555
No 64
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.94 E-value=4.3e-27 Score=192.46 Aligned_cols=134 Identities=25% Similarity=0.334 Sum_probs=125.5
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||.|++.|+.+++++|++++.++ +..+..|+||||+|+. |+.+++++|+++++++ +.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~ 76 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP---NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPA 76 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTT
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc---CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCC
Confidence 4678999999999999999999999999999998765 4567889999999999 9999999999999998 788888
Q ss_pred -CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 040055 82 -KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (387)
Q Consensus 82 -g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 141 (387)
|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++.+++++|+++|+|
T Consensus 77 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 77 TLTRPVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TTBCHHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999988 78999999999999999999999999999875
No 65
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.94 E-value=3.7e-26 Score=215.45 Aligned_cols=216 Identities=22% Similarity=0.174 Sum_probs=162.3
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCC-CCCCcHHHHHHHcCCHHHHHHHHhcCCchh------------
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLT-SLRETPLHISALLGHLDFTKALLNHKPELA------------ 75 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~------------ 75 (387)
+.+|.|+||.|++.|+.++|++|+++|+++.. .+ ..|+||||+|+..|+.+++++|+++|+++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~---~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNF---QEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTC---CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHCCCCCCc---cCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHH
Confidence 44689999999999999999999999987633 33 348999999999999999999999887541
Q ss_pred --------------------hccCCCCChHHHHHHHhCcHHHHHHHHhhCCccc---------cccCCCCChHHHHHHHc
Q 040055 76 --------------------KELDSLKHSPLHLASAEGHVQIVKELLLANKDAC---------LVADQDGRIPLHLAAMR 126 (387)
Q Consensus 76 --------------------~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~---------~~~d~~g~t~Lh~A~~~ 126 (387)
+..|..|+||||+|+..|+.++++.|++.++++. ...+..|+||||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~ 178 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 178 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHC
Confidence 4567889999999999999999999999887652 12456789999999999
Q ss_pred CCHHHHHHHHh-cCCCccccccCCCcHHHHHh-----------hhhhccccccccccccccccCCCcchHhHHH------
Q 040055 127 GRVEVVQELIS-ANFDSVLVKFHGDTVLHLCT-----------TSYLLSIPQIRVDVNSLIENGFTMLQKDLQE------ 188 (387)
Q Consensus 127 g~~~iv~~Ll~-~~~~~~~~d~~G~T~Lh~A~-----------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~~~------ 188 (387)
|+.+++++|++ .|++++..|..|+|+||.++ +++|++.+ +++|.+|..|+||||.....
T Consensus 179 g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g---ad~n~~d~~g~t~L~~a~~~~~~~~v 255 (337)
T 4g8k_A 179 GHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG---ADVNVRGERGKTPLILAVEKKHLGLV 255 (337)
T ss_dssp TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT---CCTTCCCGGGCCHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC---CCCCCcCCCCCCHHHHHHHhhhhHHH
Confidence 99999999996 59999999999999999876 45677777 88999999999999933321
Q ss_pred -HhcCCCCcccCCCCCCCccccccccCchhhHHHHHhhhhhcch
Q 040055 189 -AIAVPSTKSETKALPLSPNVTLHHRDEPQAQASLRQLLKFDSD 231 (387)
Q Consensus 189 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (387)
.+-.. ...........+...++........+.++.+++.+.+
T Consensus 256 ~~Ll~~-~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd 298 (337)
T 4g8k_A 256 QRLLEQ-EHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAS 298 (337)
T ss_dssp HHHHTS-TTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS
T ss_pred HHHHHh-cCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 11111 1111122223334445544444445556666665543
No 66
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=2.2e-27 Score=213.32 Aligned_cols=165 Identities=19% Similarity=0.226 Sum_probs=116.8
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 88 (387)
+..|.||||.|++.|+.+.++.|++++.++. .+..|.||||.|+..|+.++++.|++.++++ +.+|..|+||||+
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~----~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK----FNPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHN 76 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCcc----cCchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHH
Confidence 4569999999999999999999999998763 2356899999999999999999999999988 7889999999999
Q ss_pred HHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCC-cHHHHH--h-------h
Q 040055 89 ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGD-TVLHLC--T-------T 158 (387)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~-T~Lh~A--~-------~ 158 (387)
|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++++..|..|. ||||+| + +
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999988 88999999999999999999999999999999999988777 999999 3 6
Q ss_pred hhhccccccccccccccccCCCcc
Q 040055 159 SYLLSIPQIRVDVNSLIENGFTML 182 (387)
Q Consensus 159 ~~ll~~~~~~~~~~~~~~~G~t~l 182 (387)
++|++.+ ++++..++.+.+++
T Consensus 156 ~~Ll~~~---a~~~~~~~~~~~al 176 (239)
T 1ycs_B 156 QFLYGVQ---EKMGIMNKGVIYAL 176 (239)
T ss_dssp HHHHHHH---HHTTTTGGGEEEES
T ss_pred HHHHHhh---hcccccccceEEEE
Confidence 6777776 66666655544443
No 67
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=6.9e-27 Score=214.69 Aligned_cols=170 Identities=21% Similarity=0.237 Sum_probs=152.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCC-chhhccCCCCChHHHHHH
Q 040055 12 STHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKP-ELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 12 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~-~~~~~~d~~g~tpLh~Aa 90 (387)
+.+++|.|+..|+.+.++.+++...+. ..+..|..|+||||+|+..|+.++++.|++.++ ++ +..|..|+||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~-~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDY-VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTA 153 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHH-HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhh-cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHH
Confidence 567889999999999999998876542 235578889999999999999999999999998 55 888999999999999
Q ss_pred -----HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------h
Q 040055 91 -----AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------T 158 (387)
Q Consensus 91 -----~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~ 158 (387)
..++.++++.|++.+... ...|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+ +
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv 232 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIA 232 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHH
Confidence 678999999999999766 678889999999999999999999999999999999999999999998 7
Q ss_pred hhhcc-ccccccccccccccCCCcchHhHH
Q 040055 159 SYLLS-IPQIRVDVNSLIENGFTMLQKDLQ 187 (387)
Q Consensus 159 ~~ll~-~~~~~~~~~~~~~~G~t~l~~~~~ 187 (387)
++|++ .+ ++++.+|..|+||++.+..
T Consensus 233 ~~Ll~~~g---ad~~~~d~~g~TpL~~A~~ 259 (276)
T 4hbd_A 233 GLLLAVPS---CDISLTDRDGSTALMVALD 259 (276)
T ss_dssp HHHHTSTT---CCTTCCCTTSCCHHHHHHH
T ss_pred HHHHhcCC---CCCcCcCCCCCCHHHHHHH
Confidence 77887 56 8899999999999995543
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.94 E-value=3.2e-26 Score=194.68 Aligned_cols=143 Identities=22% Similarity=0.225 Sum_probs=128.2
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
++.+|..|.||||+|++.|+.+++++|+++++++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+|
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 104 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADP---HILAKERESALSLASTGGYTDIVGLLLERDVDI-NIYDWNGGT 104 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCC
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc---hhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 5778999999999999999999999999999865 456778999999999999999999999999998 788999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcH
Q 040055 85 PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTV 152 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~ 152 (387)
|||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++++++....+..|.||
T Consensus 105 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 105 PLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence 999999999999999999999988 7899999999999999999999999999999988888888876
No 69
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=1.1e-25 Score=189.26 Aligned_cols=135 Identities=22% Similarity=0.260 Sum_probs=124.7
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||.|+. |+.+++++|++++.++ +..+..|+||||+|+..|+.++++.|+++++++ +.+|..
T Consensus 28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 102 (162)
T 1ihb_A 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP---DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV-NIEDNE 102 (162)
T ss_dssp CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 45778889999999999999 9999999999998765 456778999999999999999999999999998 788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 141 (387)
|+||||+|+..|+.+++++|++.+++..+.+|..|+||||+|+..|+.+++++|+++|++
T Consensus 103 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 103 GNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 999999999999999999999999986688999999999999999999999999999975
No 70
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.93 E-value=6.7e-25 Score=206.87 Aligned_cols=133 Identities=23% Similarity=0.190 Sum_probs=107.1
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCchhhccC-CCCChHHHHHHHhCcHHHHHHHHhhCCcc-----------------
Q 040055 47 LRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLHLASAEGHVQIVKELLLANKDA----------------- 108 (387)
Q Consensus 47 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~----------------- 108 (387)
+|.||||.|++.|+.++|+.||++|+++ +.++ ..|+||||+|+..|+.+++++|+++++++
T Consensus 24 ~~~t~L~~Av~~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 102 (337)
T 4g8k_A 24 EDNHLLIKAVQNEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA 102 (337)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence 4789999999999999999999999998 5555 56999999999999999999999988764
Q ss_pred ---------------ccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCcccc----------ccCCCcHHHHHh------
Q 040055 109 ---------------CLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLV----------KFHGDTVLHLCT------ 157 (387)
Q Consensus 109 ---------------~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~----------d~~G~T~Lh~A~------ 157 (387)
.+.+|..|+||||+|+..|+.+++++|+++|++++.. +..|.||||+|+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~ 182 (337)
T 4g8k_A 103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 182 (337)
T ss_dssp TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence 1345677788888888888888888888887776543 445778888887
Q ss_pred -hhhhcc-ccccccccccccccCCCcch
Q 040055 158 -TSYLLS-IPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 158 -~~~ll~-~~~~~~~~~~~~~~G~t~l~ 183 (387)
+++|++ .+ ++++.+|..|.|+++
T Consensus 183 ~v~~LL~~~g---ad~n~~d~~g~t~l~ 207 (337)
T 4g8k_A 183 VLKILLDEMG---ADVNACDNMGRNALI 207 (337)
T ss_dssp HHHHHHHHSC---CCTTCCCTTSCCHHH
T ss_pred HHHHHHhccC---CCcCccCCCCCcHHH
Confidence 555664 34 667888888888876
No 71
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=2.2e-25 Score=192.98 Aligned_cols=140 Identities=21% Similarity=0.255 Sum_probs=130.4
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHH
Q 040055 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLH 121 (387)
Q Consensus 42 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh 121 (387)
+..|..|+||||+|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 106 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPLM 106 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 345778999999999999999999999999988 778999999999999999999999999999887 788999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchHhH
Q 040055 122 LAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 122 ~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ++++.+|..|.||++.+.
T Consensus 107 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~l~~A~ 175 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG---ADISARDLTGLTAEASAR 175 (192)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---CCTTCBCTTSCBHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC---CCCCCcCCCCCCHHHHHH
Confidence 999999999999999999999999999999999998 77788887 889999999999998544
No 72
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=1e-24 Score=185.05 Aligned_cols=133 Identities=26% Similarity=0.427 Sum_probs=123.9
Q ss_pred CCCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCC
Q 040055 2 EIGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSL 81 (387)
Q Consensus 2 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 81 (387)
+.+++.+|.+|.||||.|+..|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..
T Consensus 37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~ 112 (169)
T 2y1l_E 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV---NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADV-NANDME 112 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCC
Confidence 4678889999999999999999999999999998765 456778999999999999999999999999998 788999
Q ss_pred CChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 040055 82 KHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139 (387)
Q Consensus 82 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 139 (387)
|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|+..|+.+++++|++.|
T Consensus 113 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 113 GHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 999999999999999999999999987 789999999999999999999999999875
No 73
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=4.3e-25 Score=186.71 Aligned_cols=135 Identities=20% Similarity=0.310 Sum_probs=126.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 040055 47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126 (387)
Q Consensus 47 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 126 (387)
.|.||||.|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|++.+.++ +..|..|+||||+|+..
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACSK 79 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCc-CCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHc
Confidence 3889999999999999999999999887 788999999999999999999999999999887 78899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchHhH
Q 040055 127 GRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ++++.+|..|.||++.+.
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---~~~~~~~~~g~t~l~~A~ 143 (167)
T 3v31_A 80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG---ADPTIETDSGYNSMDLAV 143 (167)
T ss_dssp TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT---CCTTCCCTTSCCHHHHHH
T ss_pred CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC---CCCCCcCCCCCCHHHHHH
Confidence 9999999999999999999999999999998 67788877 889999999999999544
No 74
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=6.7e-25 Score=179.36 Aligned_cols=128 Identities=27% Similarity=0.433 Sum_probs=116.6
Q ss_pred ccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHH
Q 040055 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (387)
Q Consensus 7 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 86 (387)
.....|.||||+|++.|+.+++++|++++.++ +..|..|+||||+|+..|+.++++.|+++++++ +.+|..|+|||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L 84 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMANGADV---NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPL 84 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHH
Confidence 34566899999999999999999999999866 456788999999999999999999999999998 78899999999
Q ss_pred HHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 040055 87 HLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISAN 139 (387)
Q Consensus 87 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~ 139 (387)
|+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++.|
T Consensus 85 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 85 HLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999887 789999999999999999999999999875
No 75
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.92 E-value=1.2e-24 Score=174.44 Aligned_cols=126 Identities=35% Similarity=0.517 Sum_probs=118.3
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
+|.||||.|++.|+.+++++|++++.++ +..+..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~ 76 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHH
Confidence 5899999999999999999999998765 456778999999999999999999999999998 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 040055 91 AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 141 (387)
..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus 77 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 77 RNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999887 78899999999999999999999999999975
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.92 E-value=5.6e-25 Score=188.34 Aligned_cols=142 Identities=20% Similarity=0.272 Sum_probs=132.1
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
.+++.+|.+|.||||+|+..|+.+++++|++.+.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g 105 (179)
T 3f6q_A 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI---NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADI-NAVNEHG 105 (179)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTS
T ss_pred ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCC
Confidence 467889999999999999999999999999999866 456778999999999999999999999999998 7889999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCC
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHG 149 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G 149 (387)
+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..++.+++++|++.|++++..+..+
T Consensus 106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 106 NVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence 99999999999999999999999988 7899999999999999999999999999999998775544
No 77
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.92 E-value=1.6e-25 Score=210.55 Aligned_cols=161 Identities=15% Similarity=0.058 Sum_probs=120.5
Q ss_pred HHHHHcCCHHHHHHHHhcCCccccccc-CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCc-
Q 040055 17 YEASLRGSVRSLNTLMQNDPLILRKTS-LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGH- 94 (387)
Q Consensus 17 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~- 94 (387)
|.|+..+..++++.|++.+.++ +. .|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+||||+|+..|+
T Consensus 102 ~~a~~~~~~~~~~~l~~~g~dv---n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~-n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 102 HVSFDSLLQEVNDAFPNTQLNL---NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp --CHHHHHHHHHHHCTTSCCCS---CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHH
T ss_pred HHHHHhhHHHHHHHHHhcCCCc---ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhccc
Confidence 3333334444444444444433 33 5778999999999999999999999999998 7889999999999999998
Q ss_pred --HHHHHHHHhhCCccccccCCCCChHHHHHHH----cCCHHHHHHHHhc--------------------CCCccccccC
Q 040055 95 --VQIVKELLLANKDACLVADQDGRIPLHLAAM----RGRVEVVQELISA--------------------NFDSVLVKFH 148 (387)
Q Consensus 95 --~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~----~g~~~iv~~Ll~~--------------------~~~~~~~d~~ 148 (387)
.++++.|++.+....+.+|.+|+||||+|+. .|+.+++++|++. |++++..|..
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~ 257 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGE 257 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--------------
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCccccccc
Confidence 6888888888744448899999999999999 8999999999987 8889999999
Q ss_pred CCcHHHHHh-hhhhccccccccccccccccCCCcchHhH
Q 040055 149 GDTVLHLCT-TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 149 G~T~Lh~A~-~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
|+||||.|+ +++|++. ++|.+|..|+||||.+.
T Consensus 258 g~t~L~~a~~~~~Ll~~-----~~n~~d~~G~TpLh~A~ 291 (327)
T 1sw6_A 258 RKDSILENLDLKWIIAN-----MLNAQDSNGDTCLNIAA 291 (327)
T ss_dssp --CHHHHHCSHHHHHHH-----TTTCCCTTSCCHHHHHH
T ss_pred CCChhHHHHHHHHHHHh-----CCCCCCCCCCCHHHHHH
Confidence 999999998 6666665 38999999999999544
No 78
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=2.7e-25 Score=198.45 Aligned_cols=151 Identities=17% Similarity=0.195 Sum_probs=130.9
Q ss_pred HHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCc
Q 040055 28 LNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKD 107 (387)
Q Consensus 28 v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~ 107 (387)
++.|+++++.....+..+..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|++.+++
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~ 79 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDP-SQPNEEGITALHNAICGANYSIVDFLITAGAN 79 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 46788888776555556667889999999999999999999999998 78899999999999999999999999999988
Q ss_pred cccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccc-cCCCcHHHHH--h-------hhhhcccccccccccccccc
Q 040055 108 ACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVK-FHGDTVLHLC--T-------TSYLLSIPQIRVDVNSLIEN 177 (387)
Q Consensus 108 ~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d-~~G~T~Lh~A--~-------~~~ll~~~~~~~~~~~~~~~ 177 (387)
+ +.+|..|+||||+|+..|+.+++++|+++|++++..| .+|+||||+| + +++|++.+ ++++.+|..
T Consensus 80 ~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~g---a~~~~~~~~ 155 (229)
T 2vge_A 80 V-NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVE---QSMGLMNSG 155 (229)
T ss_dssp T-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHH---HHTTTSGGG
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcC---CCcccccCC
Confidence 8 7899999999999999999999999999999999986 6999999999 5 77888887 889999999
Q ss_pred CCCcch
Q 040055 178 GFTMLQ 183 (387)
Q Consensus 178 G~t~l~ 183 (387)
|.||++
T Consensus 156 ~~~~l~ 161 (229)
T 2vge_A 156 AVYALW 161 (229)
T ss_dssp EEEESS
T ss_pred chHHHH
Confidence 999987
No 79
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=6.9e-26 Score=195.68 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=125.5
Q ss_pred CchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCH----HHHHHHHhcCCchhhccCCCCChHHH
Q 040055 12 STHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHL----DFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 12 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~----~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
+.++|+.|++.|+.+.++.+++.+.+..+ +..|+||||+|+..|+. +++++|+++|+++ +.+|..|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~~----~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKE----SVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSCHH----HHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccccc----ccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 56799999999999999999998764311 24599999999999985 5999999999998 888999999999
Q ss_pred HHHHhCc------HHHHHHHHhhCCccccccCCCCC-hHHHHHHHcC-----CHHHHHHHHh-cCCCccccccCCCcHHH
Q 040055 88 LASAEGH------VQIVKELLLANKDACLVADQDGR-IPLHLAAMRG-----RVEVVQELIS-ANFDSVLVKFHGDTVLH 154 (387)
Q Consensus 88 ~Aa~~g~------~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A~~~g-----~~~iv~~Ll~-~~~~~~~~d~~G~T~Lh 154 (387)
+|+..|+ .+++++|++.|+++ +.+|.+|+ ||||+|+..+ ..+++++|++ +|++++.+|..|+||||
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~ 159 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE 159 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence 9999997 68899999999998 88999999 9999999954 4579999999 99999999999999999
Q ss_pred HHh
Q 040055 155 LCT 157 (387)
Q Consensus 155 ~A~ 157 (387)
+|+
T Consensus 160 ~A~ 162 (186)
T 3t8k_A 160 FVK 162 (186)
T ss_dssp HHH
T ss_pred HHH
Confidence 998
No 80
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=5.9e-25 Score=184.07 Aligned_cols=134 Identities=19% Similarity=0.188 Sum_probs=111.0
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCCh-HHHH
Q 040055 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRI-PLHL 122 (387)
Q Consensus 44 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t-~Lh~ 122 (387)
.+..|.||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+ .|+.+++++|++.+.++ +.+|..|+| |||+
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLEAGANP-NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHTTTCCT-TCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 4566999999999999999999999999998 788999999999985 99999999999999888 789999999 9999
Q ss_pred HHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcch
Q 040055 123 AAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 123 A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ++++.+|..|.||.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAA---GGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC------------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC---CCCCccCcCcCcccc
Confidence 99999999999999999999999999999999998 77888888 889999999999976
No 81
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=2e-24 Score=182.25 Aligned_cols=132 Identities=25% Similarity=0.339 Sum_probs=120.8
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
.+.+..|..|.||||+|+..|+.+++++|++++.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 108 (165)
T 3twr_A 33 VNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV---HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVV-NVADLWK 108 (165)
T ss_dssp TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTC
T ss_pred CCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC---CccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCC-CCcCCCC
Confidence 456777888999999999999999999999999866 556778999999999999999999999999998 7889999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCC
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANF 140 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~ 140 (387)
+||||+|+..|+.+++++|++.+.++ +.+|.+|+||||+|+. ++.+++++|+++|+
T Consensus 109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 109 FTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence 99999999999999999999999888 7899999999999876 99999999999875
No 82
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=4.2e-24 Score=178.39 Aligned_cols=129 Identities=26% Similarity=0.318 Sum_probs=120.1
Q ss_pred CCCCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCC
Q 040055 3 IGAREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLK 82 (387)
Q Consensus 3 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 82 (387)
.+++.+|.+|.||||. +..|+.+++++|+++++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|
T Consensus 27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g 101 (156)
T 1bd8_A 27 VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP---NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADV-NVPDGTG 101 (156)
T ss_dssp CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTS
T ss_pred cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCC
Confidence 4788899999999999 9999999999999999866 556788999999999999999999999999998 7889999
Q ss_pred ChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhc
Q 040055 83 HSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISA 138 (387)
Q Consensus 83 ~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~ 138 (387)
+||||+|+..|+.+++++|++. .+. +.+|.+|+||||+|+..|+.+++++|+++
T Consensus 102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 102 ALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999999999998 666 78999999999999999999999999874
No 83
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.91 E-value=3.5e-25 Score=198.84 Aligned_cols=144 Identities=17% Similarity=0.149 Sum_probs=127.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 88 (387)
+..|.||||.|++.|+.++++.|++.++++ +..|..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+
T Consensus 34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~ 109 (239)
T 1ycs_B 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDP---SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHC 109 (239)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTSTTSSC---CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHH
T ss_pred CchhhHHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 356899999999999999999999999865 556788999999999999999999999999998 8889999999999
Q ss_pred HHHhCcHHHHHHHHhhCCccccccCCCCC-hHHHHH--HHcCCHHHHHHHHhcCCCcccc---------ccCCCcHHHHH
Q 040055 89 ASAEGHVQIVKELLLANKDACLVADQDGR-IPLHLA--AMRGRVEVVQELISANFDSVLV---------KFHGDTVLHLC 156 (387)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--~~~g~~~iv~~Ll~~~~~~~~~---------d~~G~T~Lh~A 156 (387)
|+..|+.+++++|++.++++ +.++..|. ||||+| +..|+.+++++|+++|++.+.. |..++++++++
T Consensus 110 A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa 188 (239)
T 1ycs_B 110 AASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELP 188 (239)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCC
T ss_pred HHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCccc
Confidence 99999999999999999998 66776666 999999 8889999999999998887665 66678888877
Q ss_pred h
Q 040055 157 T 157 (387)
Q Consensus 157 ~ 157 (387)
.
T Consensus 189 ~ 189 (239)
T 1ycs_B 189 M 189 (239)
T ss_dssp B
T ss_pred c
Confidence 5
No 84
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.91 E-value=9.2e-24 Score=176.00 Aligned_cols=123 Identities=24% Similarity=0.323 Sum_probs=115.7
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
.|..|.||||.|+..|+.+++++|++.+.++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~ 105 (153)
T 1awc_B 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR---DARTKVDRTPLHMAASEGHANIVEVLLKHGADV-NAKDMLKMTALH 105 (153)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT---TCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 5788999999999999999999999998865 456778999999999999999999999999998 788999999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHH
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQEL 135 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~L 135 (387)
+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|
T Consensus 106 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 106 WATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 999999999999999999988 78999999999999999999999986
No 85
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.91 E-value=7.6e-25 Score=179.13 Aligned_cols=125 Identities=27% Similarity=0.277 Sum_probs=60.9
Q ss_pred ccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHH
Q 040055 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPL 86 (387)
Q Consensus 7 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpL 86 (387)
.+|.+|.||||.|+..|+.+++++|++.+.++ +..|..|+||||+|+..|+.+++++|+++++++ +.+|..|+|||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L 80 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP---NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPL 80 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS---CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHH
Confidence 34445555555555555555555555544433 223344555555555555555555555555444 34444455555
Q ss_pred HHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHH
Q 040055 87 HLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELI 136 (387)
Q Consensus 87 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll 136 (387)
|+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..+..+++++|.
T Consensus 81 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~ 129 (137)
T 3c5r_A 81 HDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPE 129 (137)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC-
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhcc
Confidence 5555555555555555544444 444455555555554444444444433
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.90 E-value=4.8e-24 Score=174.26 Aligned_cols=113 Identities=21% Similarity=0.271 Sum_probs=107.8
Q ss_pred ccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCC-CChHH
Q 040055 42 TSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQD-GRIPL 120 (387)
Q Consensus 42 ~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~L 120 (387)
+..+..|.||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+. |+.+++++|++.++++ +.+|.. |+|||
T Consensus 6 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L 82 (136)
T 1d9s_A 6 HMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTRPV 82 (136)
T ss_dssp SCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBCHH
T ss_pred cCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCCHH
Confidence 456778999999999999999999999999998 7889999999999999 9999999999999988 788988 99999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 121 HLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 121 h~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|+|+..|+.+++++|+++|++++..|..|+||||+|+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~ 119 (136)
T 1d9s_A 83 HDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119 (136)
T ss_dssp HHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence 9999999999999999999999999999999999998
No 87
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=3.6e-24 Score=189.82 Aligned_cols=136 Identities=21% Similarity=0.263 Sum_probs=92.7
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhc-CCchhhccCCCCChHH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNH-KPELAKELDSLKHSPL 86 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~tpL 86 (387)
+|.+|.||||+|+..|+.++++.|++.+.++ +..|..|+||||+|+..|+.+++++|+++ +.++ +.+|..|+|||
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL 144 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV---NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTAL 144 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCc---cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHH
Confidence 4556777888888888888888888777654 44566678888888888888888888877 6666 66777788888
Q ss_pred HHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccC
Q 040055 87 HLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFH 148 (387)
Q Consensus 87 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~ 148 (387)
|+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..++.++++.|++.++.....+.+
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~ 205 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAE 205 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC---------------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchh
Confidence 8888888888888888877776 677777888888888877888888877777776655433
No 88
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.89 E-value=3.2e-23 Score=169.42 Aligned_cols=113 Identities=27% Similarity=0.331 Sum_probs=107.8
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHH
Q 040055 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123 (387)
Q Consensus 44 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 123 (387)
.|..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHHH
Confidence 5677999999999999999999999999998 788999999999999999999999999999887 78999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 124 AMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
+..|+.+++++|+++|++++..|.+|+||||+|+.
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~ 118 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDD 118 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCC
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhh
Confidence 99999999999999999999999999999999983
No 89
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.89 E-value=2.8e-23 Score=192.96 Aligned_cols=140 Identities=16% Similarity=0.145 Sum_probs=121.0
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCccccc---ccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRK---TSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
.+.++|+.|++.|+.+.++.|++.++++... ...+..|+||||+|+.. |+.+++++|+++|+++ +.+|..|+|
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~T 228 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 228 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCC
Confidence 3567899999999999999999998876331 01467799999999997 8999999999999998 788999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 85 PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
|||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++ .|.||||+|+.
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~ 295 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLHVDYS 295 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhHHHHh
Confidence 999999999999999999999988 78999999999999999999999999998765 68999999974
No 90
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=4.6e-23 Score=165.30 Aligned_cols=110 Identities=25% Similarity=0.284 Sum_probs=68.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHH
Q 040055 46 SLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAM 125 (387)
Q Consensus 46 ~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~ 125 (387)
+.|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+.
T Consensus 5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A~~ 82 (123)
T 3aaa_C 5 SMCDKEFMWALKNGDLDEVKDYVAKGEDV-NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVY 82 (123)
T ss_dssp --CHHHHHHHHHTTCHHHHHHHHHTTCCT-TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCc-CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHH
Confidence 34556666666666666666666666655 555666666666666666666666666666555 5566666666666666
Q ss_pred cCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 126 RGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 126 ~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
.|+.+++++|+++|++++..|.+|+||||+|.
T Consensus 83 ~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 83 EGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114 (123)
T ss_dssp HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCC
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhC
Confidence 66666666666666666666666666666653
No 91
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.89 E-value=3.1e-23 Score=166.30 Aligned_cols=116 Identities=22% Similarity=0.251 Sum_probs=103.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHL 88 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~ 88 (387)
+..|.||||+|++.|+.++++.|++.++++ +..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDV---NRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS 79 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCT---TSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCc---CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 567899999999999999999999999865 556778999999999999999999999999998 7889999999999
Q ss_pred HHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCH
Q 040055 89 ASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRV 129 (387)
Q Consensus 89 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~ 129 (387)
|+..|+.+++++|++.++++ +.+|.+|+||||+|...+..
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHH
Confidence 99999999999999999987 78999999999999544333
No 92
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=4.7e-23 Score=168.31 Aligned_cols=112 Identities=29% Similarity=0.364 Sum_probs=106.0
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 040055 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124 (387)
Q Consensus 45 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 124 (387)
...+.||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMANGADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLAA 88 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHH
Confidence 345889999999999999999999999998 788999999999999999999999999999887 788999999999999
Q ss_pred HcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 125 MRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
..|+.+++++|+++|++++..|.+|+||||+|+.
T Consensus 89 ~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~ 122 (136)
T 2jab_A 89 FIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIG 122 (136)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHH
Confidence 9999999999999999999999999999999983
No 93
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.88 E-value=1.9e-22 Score=161.45 Aligned_cols=109 Identities=42% Similarity=0.608 Sum_probs=104.7
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHc
Q 040055 47 LRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMR 126 (387)
Q Consensus 47 ~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~ 126 (387)
+|+||||+|+..|+.++++.|+++++++ +..|..|.||||+|+..|+.+++++|++.+.++ +.+|..|+||||+|+..
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~ 78 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARN 78 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc
Confidence 3899999999999999999999999998 778999999999999999999999999999887 78899999999999999
Q ss_pred CCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 127 GRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 127 g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|+.+++++|+++|++++..|.+|+||||+|+
T Consensus 79 ~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~ 109 (126)
T 1n0r_A 79 GHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109 (126)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred ChHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 9999999999999999999999999999998
No 94
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.88 E-value=1e-23 Score=181.97 Aligned_cols=136 Identities=13% Similarity=0.055 Sum_probs=118.7
Q ss_pred CCCccC-CCCchHhHHHHHcCCH----HHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCC------HHHHHHHHhcCC
Q 040055 4 GAREHD-EDSTHKLYEASLRGSV----RSLNTLMQNDPLILRKTSLTSLRETPLHISALLGH------LDFTKALLNHKP 72 (387)
Q Consensus 4 ~~~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~------~~~v~~Ll~~~~ 72 (387)
+++.++ ..|.||||+|+..|+. +++++|+++|+++ +.+|..|+||||+|+..|+ .+++++|+++|+
T Consensus 29 ~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv---n~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Ga 105 (186)
T 3t8k_A 29 GYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI---KSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105 (186)
T ss_dssp SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS---SCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC---CCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCC
Confidence 455556 6799999999999985 5899999999876 5567889999999999987 588999999999
Q ss_pred chhhccCCCCC-hHHHHHHHhC-----cHHHHHHHHh-hCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccc
Q 040055 73 ELAKELDSLKH-SPLHLASAEG-----HVQIVKELLL-ANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVL 144 (387)
Q Consensus 73 ~~~~~~d~~g~-tpLh~Aa~~g-----~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~ 144 (387)
++ +.+|..|+ ||||+|+..+ +.+++++|++ .++++ +.+|..|+||||+|++.|+.+++++|.+.....+.
T Consensus 106 di-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 106 DI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL 182 (186)
T ss_dssp CS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred CC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 98 88899999 9999999944 4679999999 88888 89999999999999999999999999986544433
No 95
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.88 E-value=2.6e-24 Score=205.50 Aligned_cols=149 Identities=16% Similarity=0.122 Sum_probs=120.8
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCch--hhccCCCCChH
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPEL--AKELDSLKHSP 85 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~--~~~~d~~g~tp 85 (387)
++.++.||||.|++.|+.++|++|+++++........+..|.||||+|+..|+.+++++|++++++. .+..+.+ +||
T Consensus 88 ~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 88 KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHA 166 (376)
T ss_dssp HTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHH
T ss_pred cCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCH
Confidence 4566789999999999999999999998732222234456889999999999999999999999752 1222223 899
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccc--cCCCCChHHHHHH-HcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-----
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLV--ADQDGRIPLHLAA-MRGRVEVVQELISANFDSVLVKFHGDTVLHLCT----- 157 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t~Lh~A~-~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~----- 157 (387)
||+|+..|+.+++++|++.+++. +. .|.+|+||||+|+ .+|+.+++++|++.|+ .|+||||+|+
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~ 238 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEK 238 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCH
Confidence 99999999999999999999886 44 7888999999999 9999999999999763 3899999998
Q ss_pred --hhhhcccc
Q 040055 158 --TSYLLSIP 165 (387)
Q Consensus 158 --~~~ll~~~ 165 (387)
+++|++.+
T Consensus 239 evv~lL~~~g 248 (376)
T 2aja_A 239 YVNPFIARHV 248 (376)
T ss_dssp THHHHHHHHH
T ss_pred HHHHHHHhcC
Confidence 55566555
No 96
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.8e-22 Score=178.83 Aligned_cols=111 Identities=25% Similarity=0.361 Sum_probs=105.4
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhh-CCccccccCCCCChHHHHH
Q 040055 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLA-NKDACLVADQDGRIPLHLA 123 (387)
Q Consensus 45 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A 123 (387)
+..|.||||+|+..|+.++++.|++.++++ +.+|..|+||||+|+..|+.+++++|++. +.++ +.+|.+|+||||+|
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAA 147 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHH
Confidence 345799999999999999999999999998 78899999999999999999999999998 6666 88999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 124 AMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
+..|+.+++++|+++|++++..|.+|+||||+|+
T Consensus 148 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~ 181 (222)
T 3ehr_A 148 AWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181 (222)
T ss_dssp HHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCC
T ss_pred HHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhc
Confidence 9999999999999999999999999999999998
No 97
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.4e-22 Score=181.03 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=99.9
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccC-CCCChHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLH 87 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh 87 (387)
+.+|.||||.|++.|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~ 116 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT---TCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC---CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 3468888888888888888888888 6544 445677888888888888888888888888887 4555 77888888
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
+|+..|+.+++++|++.++++ +.+|..|+||||+|+..++ +..+.||||+|+
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~ 168 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGNPMQFGR 168 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHH
Confidence 888888888888888888877 6788888888888875321 245788888887
No 98
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.87 E-value=3e-22 Score=172.13 Aligned_cols=126 Identities=19% Similarity=0.205 Sum_probs=108.4
Q ss_pred CCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccC-CCCChHHH
Q 040055 9 DEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELD-SLKHSPLH 87 (387)
Q Consensus 9 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~tpLh 87 (387)
|.+|.||||.|++.|+.++++.|++ +.++ +..|..|+||||+|+..|+.+++++|+++++++ +.+| ..|+||||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~---~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~ 115 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV---DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT---TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC---CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHH
Confidence 5678999999999999999999999 6544 556778999999999999999999999999998 5556 88999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
+|+..|+.+++++|++.++++ +.+|.+|+||||+|++.++. ..+.++|++|+
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~ 167 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKGNPMQFGR 167 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHH
Confidence 999999999999999999888 78899999999999874322 34678888887
No 99
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=1.7e-23 Score=188.58 Aligned_cols=151 Identities=22% Similarity=0.139 Sum_probs=125.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
.+.+++..++..|+.+.+..+...+... +..|.||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~~~~~~------~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~ 85 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSYIAADV------VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVA 85 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGGSCHHH------HHHHHHHHHHHHTTTCHHHHHHTTT-TCCT-TCBCTTSCBHHHHHH
T ss_pred CCccHHHHHHHcCCCccccccccccccc------ccCCCCHHHHHHHcCCHHHHHHHHc-CCCC-CCcCCCCCCHHHHHH
Confidence 3555666666666665554444443322 3458999999999999999999999 8887 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCccccccC-CCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhhhhhcccccccc
Q 040055 91 AEGHVQIVKELLLANKDACLVAD-QDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTTSYLLSIPQIRV 169 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~~~ll~~~~~~~ 169 (387)
..|+.+++++|++.++++ +.+| ..|+||||+|+..|+.+++++|+++|++++..|.+|+||||+|+..
T Consensus 86 ~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~---------- 154 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI---------- 154 (244)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH----------
T ss_pred HCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH----------
Confidence 999999999999999998 5566 8899999999999999999999999999999999999999999742
Q ss_pred ccccccccCCCcch
Q 040055 170 DVNSLIENGFTMLQ 183 (387)
Q Consensus 170 ~~~~~~~~G~t~l~ 183 (387)
..+..+.||++
T Consensus 155 ---~~~~~~~~~l~ 165 (244)
T 3ui2_A 155 ---LKTTPKGNPMQ 165 (244)
T ss_dssp ---HTTCCCSSHHH
T ss_pred ---HhccCCCCHHH
Confidence 12356788888
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.86 E-value=2.6e-21 Score=192.09 Aligned_cols=139 Identities=17% Similarity=0.150 Sum_probs=116.7
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCccccc---ccCCCCCCcHHHHHHH---cCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRK---TSLTSLRETPLHISAL---LGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~---~~~~~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
...+.||.|+..|+.+.++.|+++++++... ...+..|+||||+|+. .|+.+++++|+++|+++ +.+|.+|+|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 3457899999999999999999999876332 1236779999999976 89999999999999998 888999999
Q ss_pred HHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 85 PLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|||+|+..|+.+++++|+++++++ +.+|.+|+||||+|+..|+.+++++|+++|++.+. +|+|.+.
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~ 275 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDY 275 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeec
Confidence 999999999999999999999998 88999999999999999999999999999999875 5777654
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.86 E-value=1.7e-21 Score=178.90 Aligned_cols=128 Identities=19% Similarity=0.187 Sum_probs=116.1
Q ss_pred CchHhHHHHHcCCHHHHHHHHhcCCcccc---cccCCCCCCcHHHHHHHc---CCHHHHHHHHhcCCchhhccCCCCChH
Q 040055 12 STHKLYEASLRGSVRSLNTLMQNDPLILR---KTSLTSLRETPLHISALL---GHLDFTKALLNHKPELAKELDSLKHSP 85 (387)
Q Consensus 12 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~tp 85 (387)
..++|+.|++.|+.+.++.+++.+.++.. .+..+..|+||||+|+.. |+.+++++|+++|+++ +.+|..|+||
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~Tp 208 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCH
Confidence 45789999999999999999999887532 233467799999999999 8999999999999998 7889999999
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCC
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFD 141 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~ 141 (387)
||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 99999999999999999999988 88999999999999999999999999998875
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.86 E-value=1.3e-21 Score=168.09 Aligned_cols=111 Identities=27% Similarity=0.249 Sum_probs=104.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccC-CCCChHHHHH
Q 040055 45 TSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVAD-QDGRIPLHLA 123 (387)
Q Consensus 45 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A 123 (387)
+..|+||||+|+..|+.++++.|++ +.++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+| .+|+||||+|
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A 117 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDV-DAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMA 117 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHH
Confidence 3468999999999999999999999 8887 788999999999999999999999999999988 5566 8999999999
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcHHHHHhh
Q 040055 124 AMRGRVEVVQELISANFDSVLVKFHGDTVLHLCTT 158 (387)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~~ 158 (387)
+..|+.+++++|+++|++++.+|.+|+||||+|+.
T Consensus 118 ~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~ 152 (183)
T 3deo_A 118 AGYVRPEVVEALVELGADIEVEDERGLTALELARE 152 (183)
T ss_dssp HHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHH
T ss_pred HhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHH
Confidence 99999999999999999999999999999999974
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.86 E-value=2.2e-21 Score=184.63 Aligned_cols=146 Identities=21% Similarity=0.213 Sum_probs=115.8
Q ss_pred CCCCchHhHHHHHc-CCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHH
Q 040055 9 DEDSTHKLYEASLR-GSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLH 87 (387)
Q Consensus 9 d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh 87 (387)
+..+.|+||.|+.. |+.++++.|+++++++... ..+..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWV-NGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 44567899999999 9999999999999876332 12267999999999999999999999999998 788999999999
Q ss_pred HHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCc---cccccCCCcHHHHHh
Q 040055 88 LASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDS---VLVKFHGDTVLHLCT 157 (387)
Q Consensus 88 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~---~~~d~~G~T~Lh~A~ 157 (387)
+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|+.+++++|++.+... ...+..+.|+++++.
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~ 345 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFR 345 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC--------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHH
Confidence 999999999999999999988 789999999999999999999999999876432 233556777777654
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.85 E-value=5.5e-21 Score=145.31 Aligned_cols=92 Identities=43% Similarity=0.651 Sum_probs=73.0
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcC
Q 040055 48 RETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRG 127 (387)
Q Consensus 48 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g 127 (387)
|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcC
Confidence 678888888888888888888888777 677778888888888888888888888887776 677778888888888888
Q ss_pred CHHHHHHHHhcCCC
Q 040055 128 RVEVVQELISANFD 141 (387)
Q Consensus 128 ~~~iv~~Ll~~~~~ 141 (387)
+.+++++|+++|++
T Consensus 80 ~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 80 HLEVVKLLLEAGAY 93 (93)
T ss_dssp CHHHHHHHHHTTCC
T ss_pred CHHHHHHHHHcCCC
Confidence 88888888887764
No 105
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.84 E-value=4.6e-21 Score=151.54 Aligned_cols=107 Identities=32% Similarity=0.401 Sum_probs=83.4
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHH
Q 040055 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123 (387)
Q Consensus 44 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 123 (387)
+|..|+||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|.+|+||||+|
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~A 82 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHLA 82 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHH
Confidence 4566788888888888888888888887776 667778888888888888888888888887776 67777888888888
Q ss_pred HHcCCHHHHHHHHhcCCCccccccCCCcH
Q 040055 124 AMRGRVEVVQELISANFDSVLVKFHGDTV 152 (387)
Q Consensus 124 ~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~ 152 (387)
+..++.+++++|+++|++++..+..|.||
T Consensus 83 ~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 83 KKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 88888888888888888888777777766
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=3.9e-20 Score=140.53 Aligned_cols=93 Identities=30% Similarity=0.445 Sum_probs=85.5
Q ss_pred CCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHH
Q 040055 11 DSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLAS 90 (387)
Q Consensus 11 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa 90 (387)
+|+||||+|++.|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++++++ +.+|..|+||||+|+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~---n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~ 76 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADV---NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAA 76 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCC---cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHH
Confidence 5899999999999999999999999866 556788999999999999999999999999998 788999999999999
Q ss_pred HhCcHHHHHHHHhhCCc
Q 040055 91 AEGHVQIVKELLLANKD 107 (387)
Q Consensus 91 ~~g~~~~v~~Ll~~~~~ 107 (387)
..|+.+++++|++.+++
T Consensus 77 ~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 77 RNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HTTCHHHHHHHHHTTCC
T ss_pred HcCCHHHHHHHHHcCCC
Confidence 99999999999998763
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.81 E-value=3.5e-20 Score=146.47 Aligned_cols=110 Identities=24% Similarity=0.290 Sum_probs=99.2
Q ss_pred CccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChH
Q 040055 6 REHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSP 85 (387)
Q Consensus 6 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tp 85 (387)
..+|.+|.||||.|+..|+.++++.|+++++++ +..|..|+||||+|+..|+.+++++|+++++++ +.+|..|+||
T Consensus 3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~---~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tp 78 (115)
T 2l6b_A 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV---NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTP 78 (115)
T ss_dssp -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS---SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCT
T ss_pred cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC---CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCH
Confidence 357899999999999999999999999999865 456788999999999999999999999999998 7889999999
Q ss_pred HHHHHHhCcHHHHHHHHhhCCccccccCCCCChHH
Q 040055 86 LHLASAEGHVQIVKELLLANKDACLVADQDGRIPL 120 (387)
Q Consensus 86 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 120 (387)
||+|+..|+.+++++|++.++++ +.++..|.+|-
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999999999998 78888898873
No 108
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=169.08 Aligned_cols=129 Identities=16% Similarity=0.133 Sum_probs=112.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchhhc-----cCCCCChHHHHHHHh---CcHHHHHHHHhhCCccccccCCCCChH
Q 040055 48 RETPLHISALLGHLDFTKALLNHKPELAKE-----LDSLKHSPLHLASAE---GHVQIVKELLLANKDACLVADQDGRIP 119 (387)
Q Consensus 48 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~-----~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~ 119 (387)
..++||.|+..|+.+.++.|++.++++... .|..|+||||+|+.. |+.+++++|++.++++ +.+|.+|+||
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~~G~Tp 229 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNTA 229 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCTTCCCH
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCCCCCCH
Confidence 346799999999999999999999998332 588999999999997 8999999999999988 7899999999
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcchHhH
Q 040055 120 LHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQKDL 186 (387)
Q Consensus 120 Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~~~~ 186 (387)
||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ...|.||||.+.
T Consensus 230 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g---------a~~g~tpLh~A~ 294 (301)
T 2b0o_E 230 LHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ---------AGTFAFPLHVDY 294 (301)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH---------HHTTSSCCC---
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---------CCCCCChhHHHH
Confidence 99999999999999999999999999999999999998 45555554 236899998544
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=4.8e-20 Score=175.39 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=108.3
Q ss_pred CCcHHHHHHHc-CCHHHHHHHHhcCCchhhccC--CCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHHH
Q 040055 48 RETPLHISALL-GHLDFTKALLNHKPELAKELD--SLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLAA 124 (387)
Q Consensus 48 g~tpLh~Aa~~-g~~~~v~~Ll~~~~~~~~~~d--~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~ 124 (387)
+.|+||.|+.. |+.++++.|+++|+++ +..| ..|+||||+|+..|+.+++++|++.++++ +..|.+|+||||+|+
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh~A~ 276 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLHHAT 276 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 56899999999 9999999999999998 6667 88999999999999999999999999988 789999999999999
Q ss_pred HcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCcch
Q 040055 125 MRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTMLQ 183 (387)
Q Consensus 125 ~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~l~ 183 (387)
..|+.+++++|+++|++++..|.+|+||||+|+ +++|+..+....+....+..+.|+++
T Consensus 277 ~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 277 ILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD 342 (368)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------
T ss_pred HcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH
Confidence 999999999999999999999999999999998 55666555433445556666777766
No 110
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.80 E-value=3.5e-19 Score=163.40 Aligned_cols=149 Identities=16% Similarity=0.096 Sum_probs=123.2
Q ss_pred cCCCCchHhHHHHHcCCHHHHHHHHhcCCccc----ccc-------------------cC-----CCCCCcHHHHHHHcC
Q 040055 8 HDEDSTHKLYEASLRGSVRSLNTLMQNDPLIL----RKT-------------------SL-----TSLRETPLHISALLG 59 (387)
Q Consensus 8 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----~~~-------------------~~-----~~~g~tpLh~Aa~~g 59 (387)
.|..+.++|+.+...|+....+.+-..-+... ... .. +....++||.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 57778899999999999776665543221100 000 00 001236899999999
Q ss_pred CHHHHHHHHhcCCchh-----hccCCCCChHHHHHHHh---CcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHH
Q 040055 60 HLDFTKALLNHKPELA-----KELDSLKHSPLHLASAE---GHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEV 131 (387)
Q Consensus 60 ~~~~v~~Ll~~~~~~~-----~~~d~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~i 131 (387)
+.+.++.+++.++++. +..|..|+||||+|+.. |+.+++++|++.++++ +.+|.+|+||||+|+..|+.++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~TpLh~A~~~g~~~~ 220 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTALHYCCLTDNAEC 220 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCHHHHHHHcCCHHH
Confidence 9999999999998853 33488999999999999 8999999999999988 7899999999999999999999
Q ss_pred HHHHHhcCCCccccccCCCcHHHHHh
Q 040055 132 VQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 132 v~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
+++|+++|++++.+|.+|+||||+|+
T Consensus 221 v~~Ll~~gad~~~~d~~g~tpL~~A~ 246 (278)
T 1dcq_A 221 LKLLLRGKASIEIANESGETPLDIAK 246 (278)
T ss_dssp HHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred HHHHHHcCCCCCCccCCCCCHHHHHH
Confidence 99999999999999999999999998
No 111
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.79 E-value=3.9e-19 Score=176.43 Aligned_cols=129 Identities=15% Similarity=0.111 Sum_probs=108.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhcCCchhhcc------CCCCChHHHHHHH---hCcHHHHHHHHhhCCccccccCCCCCh
Q 040055 48 RETPLHISALLGHLDFTKALLNHKPELAKEL------DSLKHSPLHLASA---EGHVQIVKELLLANKDACLVADQDGRI 118 (387)
Q Consensus 48 g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~------d~~g~tpLh~Aa~---~g~~~~v~~Ll~~~~~~~~~~d~~g~t 118 (387)
..+.||.|+..|+.+.++.|++.|+++ +.. |..|+||||+|+. .|+.+++++|++.++++ +.+|.+|+|
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~-n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDF-GQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCS-SSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccc-cCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 346799999999999999999999987 544 7899999999966 99999999999999988 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh-------hhhhccccccccccccccccCCCc
Q 040055 119 PLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT-------TSYLLSIPQIRVDVNSLIENGFTM 181 (387)
Q Consensus 119 ~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~-------~~~ll~~~~~~~~~~~~~~~G~t~ 181 (387)
|||+|+..|+.+++++|+++|++++..|.+|+||||+|+ +++|++.+ ++++.....+.++
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g---a~~~~~~~h~~~~ 276 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ---AGTFAFPLHVDYS 276 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC---C------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC---CCCCCCcceeecc
Confidence 999999999999999999999999999999999999998 67788877 6676644444333
No 112
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.77 E-value=7e-21 Score=181.76 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=112.5
Q ss_pred ccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhc--cCCCCCh
Q 040055 7 EHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKE--LDSLKHS 84 (387)
Q Consensus 7 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~--~d~~g~t 84 (387)
..|.+|.||||+|++.|+.++|++|++++++....+..+. ++||||+|+..|+.+++++|+++|+++ .. .|..|+|
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~-~~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~T 200 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE-NYHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYY 200 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH-HHHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC-CCCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCC
Confidence 4566789999999999999999999999964211111112 289999999999999999999999997 44 6888999
Q ss_pred HHHHHH-HhCcHHHHHHHHhhCCccccccCCCCChHHHHHHHcCCHHHHHHHHhcCCCccccccCCCcHHHHHh
Q 040055 85 PLHLAS-AEGHVQIVKELLLANKDACLVADQDGRIPLHLAAMRGRVEVVQELISANFDSVLVKFHGDTVLHLCT 157 (387)
Q Consensus 85 pLh~Aa-~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~g~~~iv~~Ll~~~~~~~~~d~~G~T~Lh~A~ 157 (387)
|||+|+ ..|+.+++++|++.++ .|.||||+|+.+|+.+++++|+++|++++..|. +++.|+
T Consensus 201 pL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~----~l~~A~ 262 (376)
T 2aja_A 201 AFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD----AFKLSN 262 (376)
T ss_dssp HHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT----TTTTTS
T ss_pred HHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH----HHHHHH
Confidence 999999 9999999999998552 288999999999999999999999888765543 455554
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=1e-17 Score=131.38 Aligned_cols=90 Identities=27% Similarity=0.371 Sum_probs=63.1
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCChHHHHHHHhCcHHHHHHHHhhCCccccccCCCCChHHHHH
Q 040055 44 LTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHSPLHLASAEGHVQIVKELLLANKDACLVADQDGRIPLHLA 123 (387)
Q Consensus 44 ~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 123 (387)
.+.+|.||||+|+..|+.++++.|+++++++ +.+|..|+||||+|+..|+.+++++|++.++++ +.+|..|+||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i-~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADV-AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHHH
Confidence 4556777777777777777777777777766 566777777777777777777777777776665 56677777777777
Q ss_pred HHcCCHHHHHHH
Q 040055 124 AMRGRVEVVQEL 135 (387)
Q Consensus 124 ~~~g~~~iv~~L 135 (387)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 777777777655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.73 E-value=2.1e-17 Score=129.57 Aligned_cols=93 Identities=25% Similarity=0.372 Sum_probs=82.4
Q ss_pred CCccCCCCchHhHHHHHcCCHHHHHHHHhcCCcccccccCCCCCCcHHHHHHHcCCHHHHHHHHhcCCchhhccCCCCCh
Q 040055 5 AREHDEDSTHKLYEASLRGSVRSLNTLMQNDPLILRKTSLTSLRETPLHISALLGHLDFTKALLNHKPELAKELDSLKHS 84 (387)
Q Consensus 5 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 84 (387)
....|.+|.||||.|+..|+.+++++|++.++++ +..|..|+||||+|+..|+.+++++|+++|+++ +.+|..|+|
T Consensus 17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i---~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t 92 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADV---AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKT 92 (110)
T ss_dssp -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCT---TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCC
T ss_pred ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCc
Confidence 4556889999999999999999999999998866 456788999999999999999999999999998 788999999
Q ss_pred HHHHHHHhCcHHHHHHH
Q 040055 85 PLHLASAEGHVQIVKEL 101 (387)
Q Consensus 85 pLh~Aa~~g~~~~v~~L 101 (387)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999876
No 115
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=29.04 E-value=39 Score=19.81 Aligned_cols=19 Identities=21% Similarity=0.366 Sum_probs=13.9
Q ss_pred HhHHHHHcCCHHHHHHHHh
Q 040055 15 KLYEASLRGSVRSLNTLMQ 33 (387)
Q Consensus 15 ~L~~A~~~g~~~~v~~Ll~ 33 (387)
-++.||..|+.+.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 4677888888888877643
No 116
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.90 E-value=1.4e+02 Score=27.86 Aligned_cols=52 Identities=17% Similarity=0.229 Sum_probs=38.0
Q ss_pred HHHHcCCHHHHHHHHhcCCccccc-----------ccCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 040055 18 EASLRGSVRSLNTLMQNDPLILRK-----------TSLTSLRETPLHISALLGHLDFTKALLN 69 (387)
Q Consensus 18 ~A~~~g~~~~v~~Ll~~~~~~~~~-----------~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 69 (387)
..+..|+...|+..+..+.+.... ...-.-|.|.+|+|++..+.+++..|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhh
Confidence 445669999999999988765321 1122348888888888888888888886
Done!