BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040056
(536 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 32/109 (29%), Positives = 52/109 (47%), Gaps = 10/109 (9%)
Query: 209 NQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELD 268
N LE+VK L + DV + L AA+ G+++ + L+ + D V+ D
Sbjct: 12 NGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKD 65
Query: 269 ENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 317
+NGR+ H+A + H+ + L+ E G + D G LHLAA+
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 110
Score = 36.6 bits (83), Expect = 0.034, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 235 RKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQG 294
R P +L AA+ G+++ + L+ + D V+ D+NGR+ H+A + H+ + L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 FNKQLLATYLDSCGNNILHLAAK 317
+ D G LHLAA+
Sbjct: 59 AD----VNAKDKNGRTPLHLAAR 77
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 209 NQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELD 268
N LE+VK L + DV + L AA+ G+++ + L+ + D V+ D
Sbjct: 45 NGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKD 98
Query: 269 ENGRSIFHVAILHRHMNIFNLIYEQG 294
+NGR+ H+A + H+ + L+ E G
Sbjct: 99 KNGRTPLHLAARNGHLEVVKLLLEAG 124
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 270 NGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 317
NGR+ H+A + H+ + L+ E G + D G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 36.6 bits (83), Expect = 0.035, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 8/83 (9%)
Query: 235 RKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQG 294
R P +L AA+ G+++ + L+ + D V+ D+NGR+ H+A + H+ + L+ E G
Sbjct: 3 RTPLHL---AARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 295 FNKQLLATYLDSCGNNILHLAAK 317
+ D G LHLAA+
Sbjct: 59 AD----VNAKDKNGRTPLHLAAR 77
Score = 32.3 bits (72), Expect = 0.60, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 209 NQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELD 268
N LE+VK L + DV + L AA+ G+++ + L+ + D V+ D
Sbjct: 12 NGHLEVVKLLL-----EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD-VNAKD 65
Query: 269 ENGRSIFHVAILHRHMNIFNLIYEQG 294
+NGR+ H+A + H+ + L+ E G
Sbjct: 66 KNGRTPLHLAARNGHLEVVKLLLEAG 91
Score = 28.9 bits (63), Expect = 6.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 270 NGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 317
NGR+ H+A + H+ + L+ E G + D G LHLAA+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGAD----VNAKDKNGRTPLHLAAR 44
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 41/209 (19%)
Query: 113 PLYFAALFGQTDTASFLF-HRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALT 171
PL+ AA G T+ A +L +++K +D + + G ++ LL+++ L
Sbjct: 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLA 109
Query: 172 HHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVA 231
H T LH+ AR +TVL ++ +++ A
Sbjct: 110 TTAGH-TPLHIAAR--EGHVETVLALL--------------------------EKEASQA 140
Query: 232 EAIRKPTNLLFDAAKVGNIQFLAELI---GSYPDLVHELDENGRSIFHVAILHRHMNIFN 288
+K L AAK G ++ +AEL+ ++P+ +NG + HVA+ H +++I
Sbjct: 141 CMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAA---GKNGLTPLHVAVHHNNLDIVK 196
Query: 289 LIYEQGFNKQLLATYLDSCGNNILHLAAK 317
L+ +G + A G LH+AAK
Sbjct: 197 LLLPRGGSPHSPAW----NGYTPLHIAAK 221
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 34.3 bits (77), Expect = 0.17, Method: Composition-based stats.
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 28/128 (21%)
Query: 241 LFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLL 300
L +AA+ GN + +L+ + D V+ D +G++ H+A + H + L+ QG +
Sbjct: 8 LIEAAENGNKDRVKDLLENGAD-VNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNA- 65
Query: 301 ATYLDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVE--MIVQPSYKEMKNY 358
DS G LHLAA+ +G +KEV ++ Q + K+
Sbjct: 66 ---KDSDGKTPLHLAAE----------NG-----------HKEVVKLLLSQGADPNAKDS 101
Query: 359 DGKTPREL 366
DGKTP L
Sbjct: 102 DGKTPLHL 109
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 43 TVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTXXXXXXXXXXVDIANLMLKKNPSL 102
T LH+A VQ LL+ D+ QD+ G T VD+ L+L K S
Sbjct: 79 TCLHLAAKKGHYEVVQYLLSN-GQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKG-SD 136
Query: 103 LGIRGSKNMPPLYFAALFGQTDTASFLF 130
+ IR ++ L++AA G D A L
Sbjct: 137 INIRDNEENICLHWAAFSGCVDIAEILL 164
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 55/190 (28%), Positives = 78/190 (41%), Gaps = 41/190 (21%)
Query: 202 RNIELMNNQALELVKCLWREIVRQEDVDVAEAI-RKPTNLLFDAAKVGNIQFLAELIGSY 260
R IE N + VK L I DV+ +++ R P L AAK G+ + + LI
Sbjct: 7 RLIEAAENGNKDRVKDL---IENGADVNASDSDGRTP---LHYAAKEGHKEIVKLLISKG 60
Query: 261 PDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPT 320
D V+ D +GR+ H A H I L+ +G + DS G LH AAK
Sbjct: 61 AD-VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD----VNAKDSDGRTPLHYAAK--- 112
Query: 321 LSPYRTVSGAALEMQRE---LLIYKEVEMIVQPSYKEMKNYDGKTP----RELFTVEHLE 373
E +E LLI K ++ S DG+TP RE E ++
Sbjct: 113 ------------EGHKEIVKLLISKGADVNTSDS-------DGRTPLDLAREHGNEEIVK 153
Query: 374 LLRRGEQWMK 383
LL + W++
Sbjct: 154 LLEKQGGWLE 163
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 4/98 (4%)
Query: 68 DLILQDENGNTXXXXXXXXXXVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTAS 127
D+ D GNT ++I ++LK + + PL+ AALFG +
Sbjct: 39 DVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADV-NAHDNDGSTPLHLAALFGHLEIVE 97
Query: 128 FLFHRSKKELTTEDR--KVIFITSVDTGLYDLALKLLK 163
L + ++ +D+ K F S+D G DLA L K
Sbjct: 98 VLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 32.7 bits (73), Expect = 0.49, Method: Composition-based stats.
Identities = 33/123 (26%), Positives = 54/123 (43%), Gaps = 6/123 (4%)
Query: 43 TVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTXXXXXXXXXXVDIANLMLKKNPSL 102
T LH+A V+ LL + D+ D G T ++I ++LK N +
Sbjct: 49 TPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLK-NGAD 105
Query: 103 LGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDR--KVIFITSVDTGLYDLALK 160
+ + PL+ AA+FG + L ++ ++ +D+ K F S+D G DLA
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
Query: 161 LLK 163
L K
Sbjct: 165 LQK 167
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 230 VAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNL 289
VAE N L +AAK GN+ +L E + + V+ LD+ G + + A H +I
Sbjct: 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVG-VNGLDKAGSTALYWACHGGHKDIVEX 124
Query: 290 IYEQ---GFNKQLLATYLDSCGNNILHLAA 316
++ Q N+Q + G+ LH AA
Sbjct: 125 LFTQPNIELNQQ------NKLGDTALHAAA 148
>pdb|3CQY|A Chain A, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
pdb|3CQY|B Chain B, Crystal Structure Of A Functionally Unknown Protein
(So_1313) From Shewanella Oneidensis Mr-1
Length = 370
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 12/99 (12%)
Query: 219 WREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYP--DLVHELDENGRSIFH 276
W + V+ E D N + A+ + Q LA+L+ S+P L + GR +F+
Sbjct: 200 WVQQVKNESYD--------KNGAWAASGKTDPQLLAQLL-SHPYFSLAYP-KSTGRELFN 249
Query: 277 VAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLA 315
A L + ++ FN + E+ LL S +IL LA
Sbjct: 250 QAWLEQQLSAFNQLNEEDIQSTLLDLTCHSIAQDILKLA 288
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 30.0 bits (66), Expect = 3.5, Method: Composition-based stats.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 5/100 (5%)
Query: 222 IVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILH 281
I+ DV A T L AA G+++ + L+ D V D G + H+A
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYW 90
Query: 282 RHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTL 321
H+ I ++ + G + +DS G LHLAAK+ L
Sbjct: 91 GHLEIVEVLLKNGAD----VNAMDSDGMTPLHLAAKWGYL 126
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 244 AAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATY 303
AA G+++ + L+ + D V+ D G + H+A H+ I ++ + G +
Sbjct: 54 AASNGHLEIVEVLLKNGAD-VNASDLTGITPLHLAAATGHLEIVEVLLKHGAD----VNA 108
Query: 304 LDSCGNNILHLAAKYPTL 321
D+ G+ LHLAAKY L
Sbjct: 109 YDNDGHTPLHLAAKYGHL 126
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 241 LFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLL 300
L +AA+ G + L+ + D+ E D G + H+A H+ I ++ + G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DTYGDTPLHLAARVGHLEIVEVLLKNGAD---- 72
Query: 301 ATYLDSCGNNILHLAAK 317
LD G+ LHLAAK
Sbjct: 73 VNALDFSGSTPLHLAAK 89
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,059,465
Number of Sequences: 62578
Number of extensions: 519788
Number of successful extensions: 1473
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 1451
Number of HSP's gapped (non-prelim): 54
length of query: 536
length of database: 14,973,337
effective HSP length: 103
effective length of query: 433
effective length of database: 8,527,803
effective search space: 3692538699
effective search space used: 3692538699
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)