Query 040056
Match_columns 536
No_of_seqs 436 out of 3297
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 07:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040056.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040056hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 2.5E-50 8.6E-55 414.2 28.9 332 3-370 45-387 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 3.2E-50 1.1E-54 413.4 28.4 332 3-370 12-354 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 1.8E-45 6E-50 364.7 25.2 296 3-356 23-330 (337)
4 3utm_A Tankyrase-1; tankyrase, 100.0 2.1E-45 7.2E-50 365.9 22.2 304 4-377 23-330 (351)
5 1wdy_A 2-5A-dependent ribonucl 100.0 3.1E-44 1E-48 346.5 26.7 266 3-298 3-280 (285)
6 1wdy_A 2-5A-dependent ribonucl 100.0 1.5E-42 5.1E-47 334.7 21.6 263 40-358 4-284 (285)
7 3d9h_A CDNA FLJ77766, highly s 100.0 9.9E-42 3.4E-46 329.2 21.3 257 3-297 13-280 (285)
8 2xai_A ASB-9, ankyrin repeat a 100.0 3.3E-41 1.1E-45 321.4 20.4 248 3-322 1-252 (261)
9 4g8k_A 2-5A-dependent ribonucl 100.0 2.4E-40 8.1E-45 327.8 23.0 277 38-375 22-317 (337)
10 2fo1_E LIN-12 protein; beta-ba 100.0 3.3E-41 1.1E-45 338.4 16.1 256 3-296 92-371 (373)
11 2fo1_E LIN-12 protein; beta-ba 100.0 9.5E-42 3.2E-46 342.3 12.1 261 37-327 90-365 (373)
12 3utm_A Tankyrase-1; tankyrase, 100.0 1.1E-39 3.6E-44 324.7 24.9 266 3-316 56-321 (351)
13 1oy3_D Transcription factor in 100.0 2.4E-40 8.1E-45 319.0 18.9 247 38-320 6-270 (282)
14 3d9h_A CDNA FLJ77766, highly s 100.0 2.2E-40 7.5E-45 319.8 18.3 251 38-327 12-272 (285)
15 2xai_A ASB-9, ankyrin repeat a 100.0 2.1E-40 7E-45 315.9 17.7 225 3-292 34-259 (261)
16 3ljn_A Hypothetical protein; a 100.0 4.7E-41 1.6E-45 336.6 12.9 257 38-324 17-305 (364)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 2.4E-40 8.1E-45 314.0 13.5 227 32-327 2-242 (253)
18 1yyh_A HN1;, notch 1, ankyrin 100.0 1.9E-39 6.4E-44 307.8 18.0 227 3-295 8-247 (253)
19 3ljn_A Hypothetical protein; a 100.0 7.8E-40 2.7E-44 327.7 15.0 259 3-298 18-316 (364)
20 3aji_A 26S proteasome non-ATPa 100.0 3.2E-38 1.1E-42 294.9 21.0 226 4-296 5-230 (231)
21 3b7b_A Euchromatic histone-lys 100.0 3.5E-38 1.2E-42 295.9 20.6 221 32-321 3-223 (237)
22 1k1a_A B-cell lymphoma 3-encod 100.0 1.2E-38 4.3E-43 299.6 17.4 226 38-327 6-235 (241)
23 1oy3_D Transcription factor in 100.0 4.6E-39 1.6E-43 310.0 14.3 253 69-372 2-270 (282)
24 3b7b_A Euchromatic histone-lys 100.0 5.5E-38 1.9E-42 294.5 19.8 222 3-292 9-231 (237)
25 1k1a_A B-cell lymphoma 3-encod 100.0 3.1E-38 1.1E-42 296.9 16.6 191 69-327 2-202 (241)
26 1s70_B 130 kDa myosin-binding 100.0 2.7E-38 9.1E-43 307.6 15.7 262 11-317 4-274 (299)
27 2dzn_A Probable 26S proteasome 100.0 4.7E-37 1.6E-41 286.3 20.5 213 5-318 2-218 (228)
28 3aji_A 26S proteasome non-ATPa 100.0 2E-37 6.7E-42 289.6 16.5 222 38-327 3-224 (231)
29 2dzn_A Probable 26S proteasome 100.0 1.3E-36 4.3E-41 283.4 21.5 183 3-186 34-218 (228)
30 3eu9_A Huntingtin-interacting 100.0 9.6E-37 3.3E-41 286.3 20.7 230 38-298 6-237 (240)
31 3kea_A K1L; tropism, ANK repea 100.0 5.1E-37 1.7E-41 296.1 18.3 239 12-298 6-248 (285)
32 4b93_B Ankyrin repeat domain-c 100.0 5.2E-38 1.8E-42 299.8 10.7 214 3-283 9-230 (269)
33 1s70_B 130 kDa myosin-binding 100.0 4.1E-37 1.4E-41 299.2 15.2 248 2-293 37-286 (299)
34 2f8y_A Notch homolog 1, transl 100.0 2.1E-36 7.2E-41 280.9 17.1 217 16-298 2-218 (223)
35 4b93_B Ankyrin repeat domain-c 100.0 4.8E-37 1.6E-41 293.1 11.6 178 3-187 50-229 (269)
36 1sw6_A Regulatory protein SWI6 100.0 1.1E-37 3.7E-42 306.9 6.5 258 15-319 29-327 (327)
37 3kea_A K1L; tropism, ANK repea 100.0 9.5E-36 3.2E-40 287.2 16.4 230 50-327 8-240 (285)
38 3eu9_A Huntingtin-interacting 100.0 1.4E-34 4.7E-39 271.5 21.5 225 3-262 7-235 (240)
39 1ikn_D Protein (I-kappa-B-alph 100.0 9.4E-36 3.2E-40 279.2 10.1 223 37-319 4-230 (236)
40 2f8y_A Notch homolog 1, transl 100.0 4.2E-35 1.4E-39 272.1 12.3 208 52-327 2-210 (223)
41 2rfa_A Transient receptor pote 100.0 1.3E-33 4.6E-38 263.7 19.2 209 40-298 2-224 (232)
42 3hra_A Ankyrin repeat family p 100.0 5E-33 1.7E-37 253.8 20.4 200 2-294 2-201 (201)
43 1sw6_A Regulatory protein SWI6 100.0 1.9E-35 6.5E-40 290.9 3.7 261 39-369 21-325 (327)
44 2rfa_A Transient receptor pote 100.0 8.8E-33 3E-37 258.2 19.7 195 4-227 2-225 (232)
45 3hra_A Ankyrin repeat family p 100.0 1.8E-32 6.2E-37 250.0 17.4 157 3-164 37-200 (201)
46 1ikn_D Protein (I-kappa-B-alph 100.0 1.2E-33 4.2E-38 264.8 9.5 219 70-369 2-228 (236)
47 2etb_A Transient receptor pote 100.0 2.3E-32 7.9E-37 259.4 12.8 204 5-298 2-248 (256)
48 2etb_A Transient receptor pote 100.0 9E-32 3.1E-36 255.3 16.6 164 3-227 41-249 (256)
49 4gpm_A Engineered protein OR26 100.0 3.5E-31 1.2E-35 233.5 17.9 157 7-170 6-163 (169)
50 2pnn_A Transient receptor pote 100.0 7.6E-32 2.6E-36 258.4 12.4 225 38-312 10-271 (273)
51 3jxi_A Vanilloid receptor-rela 100.0 5.2E-31 1.8E-35 250.6 15.7 200 1-227 1-253 (260)
52 2pnn_A Transient receptor pote 100.0 3.8E-31 1.3E-35 253.5 14.0 195 3-224 11-258 (273)
53 4gpm_A Engineered protein OR26 100.0 1.9E-30 6.3E-35 228.8 15.9 158 43-227 6-164 (169)
54 3jxi_A Vanilloid receptor-rela 100.0 7E-31 2.4E-35 249.8 12.9 213 38-298 2-252 (260)
55 2aja_A Ankyrin repeat family p 100.0 8.3E-32 2.8E-36 267.5 4.5 261 6-326 66-367 (376)
56 3v30_A DNA-binding protein rfx 100.0 1.6E-29 5.4E-34 224.5 17.2 169 5-179 2-171 (172)
57 3v31_A Ankyrin repeat family A 100.0 7.3E-29 2.5E-33 219.0 16.8 158 4-167 2-160 (167)
58 2vge_A RELA-associated inhibit 100.0 5E-31 1.7E-35 245.2 2.1 202 21-327 1-207 (229)
59 4hbd_A KN motif and ankyrin re 100.0 1.6E-29 5.6E-34 242.2 12.0 191 5-222 76-273 (276)
60 4hbd_A KN motif and ankyrin re 100.0 1.9E-29 6.3E-34 241.9 11.4 192 41-294 76-273 (276)
61 2y1l_E Darpin-8.4; hydrolase-i 100.0 3.8E-28 1.3E-32 214.9 17.5 156 3-164 12-168 (169)
62 1ihb_A P18-INK4C(INK6), cyclin 100.0 2E-28 6.7E-33 215.1 15.3 157 1-164 1-159 (162)
63 2rfm_A Putative ankyrin repeat 100.0 2.6E-28 8.9E-33 220.8 16.2 156 3-164 33-189 (192)
64 2rfm_A Putative ankyrin repeat 100.0 3.3E-28 1.1E-32 220.0 16.0 162 33-222 28-190 (192)
65 2aja_A Ankyrin repeat family p 100.0 1.9E-30 6.4E-35 257.8 0.6 268 4-293 91-371 (376)
66 1bd8_A P19INK4D CDK4/6 inhibit 100.0 7.8E-28 2.7E-32 209.8 16.6 154 4-164 1-155 (156)
67 1awc_B Protein (GA binding pro 100.0 9.5E-28 3.3E-32 208.6 16.8 151 4-161 1-152 (153)
68 3v30_A DNA-binding protein rfx 100.0 9.9E-28 3.4E-32 212.8 15.6 161 41-227 2-163 (172)
69 3f6q_A Integrin-linked protein 100.0 4.6E-28 1.6E-32 216.5 13.2 166 4-175 4-170 (179)
70 3v31_A Ankyrin repeat family A 100.0 1.4E-27 4.9E-32 210.7 16.1 160 40-226 2-162 (167)
71 1ihb_A P18-INK4C(INK6), cyclin 99.9 7.1E-28 2.4E-32 211.5 13.2 159 39-224 3-162 (162)
72 3twr_A Tankyrase-2; ankyrin re 99.9 6.8E-28 2.3E-32 212.3 12.8 156 3-164 6-162 (165)
73 2y1l_E Darpin-8.4; hydrolase-i 99.9 3E-27 1E-31 209.1 14.8 158 38-222 11-169 (169)
74 1ycs_B 53BP2, P53BP2; ankyrin 99.9 5.1E-28 1.7E-32 226.8 8.2 210 40-369 4-227 (239)
75 2vge_A RELA-associated inhibit 99.9 7.3E-29 2.5E-33 230.6 2.2 176 3-188 19-200 (229)
76 3f6q_A Integrin-linked protein 99.9 6.4E-27 2.2E-31 209.1 13.8 164 38-227 2-166 (179)
77 1ycs_B 53BP2, P53BP2; ankyrin 99.9 1.5E-27 5E-32 223.7 9.8 178 3-188 3-193 (239)
78 3twr_A Tankyrase-2; ankyrin re 99.9 4.5E-27 1.5E-31 207.1 11.8 159 38-223 5-164 (165)
79 1awc_B Protein (GA binding pro 99.9 2.6E-26 8.8E-31 199.5 15.1 142 41-187 2-144 (153)
80 1bd8_A P19INK4D CDK4/6 inhibit 99.9 1.4E-26 4.9E-31 201.8 13.4 153 41-221 2-155 (156)
81 3t8k_A Uncharacterized protein 99.9 4.5E-26 1.5E-30 204.1 9.3 154 4-164 5-176 (186)
82 2jab_A H10-2-G3; HER2, darpin, 99.9 8.1E-25 2.8E-29 185.9 13.9 125 3-133 12-136 (136)
83 1bi7_B P16INK4A, MTS1, multipl 99.9 2.6E-25 8.8E-30 193.8 11.1 137 4-147 11-149 (156)
84 1d9s_A Cyclin-dependent kinase 99.9 5.7E-25 1.9E-29 186.9 11.2 123 4-133 11-134 (136)
85 1n0r_A 4ANK, 4 ankyrin repeats 99.9 4.6E-24 1.6E-28 178.4 14.1 125 4-134 1-125 (126)
86 1d9s_A Cyclin-dependent kinase 99.9 1.7E-24 5.9E-29 183.9 11.2 129 31-164 3-133 (136)
87 1bi7_B P16INK4A, MTS1, multipl 99.9 1.3E-24 4.3E-29 189.4 9.3 141 38-183 9-151 (156)
88 3t8k_A Uncharacterized protein 99.9 3.5E-24 1.2E-28 191.8 8.7 159 41-227 6-182 (186)
89 2jab_A H10-2-G3; HER2, darpin, 99.9 2.8E-23 9.7E-28 176.3 12.4 124 38-164 11-135 (136)
90 1n0r_A 4ANK, 4 ankyrin repeats 99.9 1.2E-22 4E-27 169.7 14.2 122 40-164 1-123 (126)
91 3deo_A Signal recognition part 99.9 4.1E-23 1.4E-27 184.9 11.9 138 4-164 43-181 (183)
92 3ui2_A Signal recognition part 99.9 6.2E-23 2.1E-27 192.6 12.4 138 4-164 44-182 (244)
93 3c5r_A BARD-1, BRCA1-associate 99.9 1.8E-23 6.3E-28 177.7 7.8 124 3-132 8-131 (137)
94 3aaa_C Myotrophin, protein V-1 99.9 6.9E-23 2.3E-27 170.7 9.9 110 4-119 6-115 (123)
95 3deo_A Signal recognition part 99.9 1.1E-23 3.9E-28 188.6 4.2 140 38-259 41-181 (183)
96 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-22 4.3E-27 196.3 11.2 141 38-188 148-298 (301)
97 3c5r_A BARD-1, BRCA1-associate 99.9 5.3E-23 1.8E-27 174.9 6.8 125 37-164 6-131 (137)
98 3ui2_A Signal recognition part 99.9 2.3E-22 7.8E-27 188.8 11.2 143 38-225 42-186 (244)
99 3ehr_A Osteoclast-stimulating 99.9 1.2E-22 3.9E-27 188.0 9.0 125 5-134 73-197 (222)
100 3aaa_C Myotrophin, protein V-1 99.9 2.1E-22 7.2E-27 167.7 9.5 115 38-155 4-119 (123)
101 3ehr_A Osteoclast-stimulating 99.9 4.1E-22 1.4E-26 184.4 7.7 134 38-175 70-205 (222)
102 2b0o_E UPLC1; arfgap, structur 99.9 3.5E-21 1.2E-25 186.1 14.0 141 5-155 151-299 (301)
103 3jue_A Arfgap with coiled-coil 99.8 6.7E-21 2.3E-25 188.3 13.2 123 5-133 199-324 (368)
104 1n0q_A 3ANK, 3 ankyrin repeats 99.8 1.1E-20 3.8E-25 148.7 11.2 92 40-134 1-92 (93)
105 1dcq_A PYK2-associated protein 99.8 1.4E-20 4.7E-25 179.9 14.0 124 6-134 131-262 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.8 2.7E-20 9.1E-25 146.5 10.6 93 4-101 1-93 (93)
107 1dcq_A PYK2-associated protein 99.8 5.8E-20 2E-24 175.5 13.9 202 72-318 62-273 (278)
108 3lvq_E ARF-GAP with SH3 domain 99.8 4.8E-20 1.6E-24 191.3 14.0 135 6-151 133-276 (497)
109 3jue_A Arfgap with coiled-coil 99.8 1.2E-19 4.3E-24 179.2 13.2 146 39-187 197-348 (368)
110 2l6b_A NR1C; ankyrin, consensu 99.8 7.8E-20 2.7E-24 150.0 8.8 106 37-145 5-111 (115)
111 2l6b_A NR1C; ankyrin, consensu 99.8 1.8E-19 6.2E-24 147.8 7.4 106 3-114 7-112 (115)
112 3lvq_E ARF-GAP with SH3 domain 99.8 8.6E-19 2.9E-23 181.9 14.1 135 41-185 132-276 (497)
113 2zgd_A 3 repeat synthetic anky 99.7 6.1E-18 2.1E-22 137.4 9.9 90 37-129 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.7 6.8E-17 2.3E-21 131.2 10.2 89 2-95 21-109 (110)
115 3gvo_A Pumilio 2, pumilio homo 75.6 22 0.00074 33.9 11.4 82 9-90 41-123 (351)
116 3gvo_A Pumilio 2, pumilio homo 66.6 39 0.0013 32.1 10.9 162 3-164 71-239 (351)
117 3k49_A MRNA-binding protein PU 62.0 1.1E+02 0.0038 29.1 15.0 183 5-187 42-233 (369)
118 3k49_A MRNA-binding protein PU 31.5 1.9E+02 0.0065 27.4 9.2 149 4-154 77-234 (369)
119 1gp8_A Protein (scaffolding pr 28.7 41 0.0014 20.1 2.3 18 8-25 16-33 (40)
120 3zrh_A Ubiquitin thioesterase 27.9 98 0.0034 29.8 6.0 51 11-63 28-91 (454)
121 3mkq_B Coatomer subunit alpha; 27.7 2.7E+02 0.0092 23.3 11.5 134 5-166 8-142 (177)
122 4ev6_A Magnesium transport pro 24.2 84 0.0029 29.6 5.1 20 474-493 282-301 (339)
123 2iub_A CORA, divalent cation t 23.5 64 0.0022 30.8 4.1 20 474-493 306-325 (363)
124 3bwt_A Protein PUF4; pumilio, 22.0 1.3E+02 0.0043 28.1 5.9 157 5-163 24-190 (333)
125 4g26_A Pentatricopeptide repea 20.6 93 0.0032 31.2 4.8 148 8-165 32-201 (501)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.5e-50 Score=414.19 Aligned_cols=332 Identities=19% Similarity=0.189 Sum_probs=255.4
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..|.||||.|+..|+.+++++|++.+ .+++.+ +.+|.||||+|+..|+.++|++|+++ +++++.+|..|.||||+
T Consensus 45 ~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~t~L~~ 119 (437)
T 1n11_A 45 VKVETPLHMAARAGHTEVAKYLLQNK--AKVNAK-AKDDQTPLHCAARIGHTNMVKLLLEN--NANPNLATTAGHTPLHI 119 (437)
T ss_dssp SCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSCC-CTTSCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC-CCCCCCHHHHHHHCCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence 46889999999999999999999998 778776 88999999999999999999999999 88899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|++++++. ...+..|.||||+|+..|+.+++++|+++++ ++..+..|.||||.|+..|+.+++++|
T Consensus 120 A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 198 (437)
T 1n11_A 120 AAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198 (437)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999998885 7778889999999999999999999999888 777888899999999999999999998
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCC-ccccc-----hhhhhhhhhhhhHh----HHHHHHHHHHHHhcCCcHHHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFA-DTVLG-----IMKCSRNIELMNNQ----ALELVKCLWREIVRQEDVDVA 231 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~ 231 (536)
++. +..++..+.+|.||||+|+..++... ...+. ..++....+++|.. ..+++++|++++.+.+.
T Consensus 199 l~~-g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---- 273 (437)
T 1n11_A 199 LPR-GGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL---- 273 (437)
T ss_dssp GGG-TCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC----
T ss_pred HhC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCC----
Confidence 887 55666778888888888888874110 00000 01111222333322 35666666666665554
Q ss_pred HhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcH
Q 040056 232 EAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNI 311 (536)
Q Consensus 232 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~Tp 311 (536)
.+..|.||||+|++.|+.+++++|++++.+ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||
T Consensus 274 -~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n----~~~~~g~t~ 347 (437)
T 1n11_A 274 -GNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN----AKTKLGYSP 347 (437)
T ss_dssp -CCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT----CCCTTSCCH
T ss_pred -CCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCC----CCCCCCCCH
Confidence 345567777777777777777777777766 66777777777777777777777777777776655 467777777
Q ss_pred hHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCccccccCCCCCCchhhhHHH
Q 040056 312 LHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMKNYDGKTPRELFTVE 370 (536)
Q Consensus 312 Lh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~~ 370 (536)
||+|+..|+.+++++| +..|++++.+|.+|+||+++|.+.
T Consensus 348 L~~A~~~g~~~iv~~L-------------------l~~ga~~~~~~~~g~t~l~~A~~~ 387 (437)
T 1n11_A 348 LHQAAQQGHTDIVTLL-------------------LKNGASPNEVSSDGTTPLAIAKRL 387 (437)
T ss_dssp HHHHHHTTCHHHHHHH-------------------HHTTCCSCCCCSSSCCHHHHHHHT
T ss_pred HHHHHHCChHHHHHHH-------------------HHCcCCCCCCCCCCCCHHHHHHHc
Confidence 7777777776666665 556777888888888888887654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.2e-50 Score=413.44 Aligned_cols=332 Identities=18% Similarity=0.176 Sum_probs=286.8
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.||..|+.++|++|++++ .+++.. +..|.||||+|+..|+.+++++|+++ +.+++.+|.+|.||||+
T Consensus 12 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (437)
T 1n11_A 12 ESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVS-NVKVETPLHMAARAGHTEVAKYLLQN--KAKVNAKAKDDQTPLHC 86 (437)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTT--CCSCCS-SSCCCCHHHHHHHHTCHHHHHHHHHH--TCCSSCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHHHH
Confidence 46899999999999999999999998 778776 88999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|++.++ .+..+..|.||||.|+..|+.+++++|
T Consensus 87 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~L 165 (437)
T 1n11_A 87 AARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 165 (437)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999998 777889999999999999999999999
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCC-cccc-----chhhhhhhhhhhhHh----HHHHHHHHHHHHhcCCcHHHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFA-DTVL-----GIMKCSRNIELMNNQ----ALELVKCLWREIVRQEDVDVA 231 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~ 231 (536)
++. +.+++..+..|.||||+|+..++... ...+ ...+.....+++|.. ..++++.|++.|.+.+.
T Consensus 166 l~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~---- 240 (437)
T 1n11_A 166 LER-DAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA---- 240 (437)
T ss_dssp HHT-TCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----
T ss_pred HhC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----
Confidence 998 77788899999999999999985111 0000 011122333444433 47888888888877766
Q ss_pred HhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcH
Q 040056 232 EAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNI 311 (536)
Q Consensus 232 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~Tp 311 (536)
.+..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||
T Consensus 241 -~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~----~~~~~g~t~ 314 (437)
T 1n11_A 241 -ESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD----ATTRMGYTP 314 (437)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT----CCCSSCCCH
T ss_pred -CCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC----CCCCCCCCH
Confidence 446678999999999999999999999888 78889999999999999999999999999988866 589999999
Q ss_pred hHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCccccccCCCCCCchhhhHHH
Q 040056 312 LHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMKNYDGKTPRELFTVE 370 (536)
Q Consensus 312 Lh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~~ 370 (536)
||+|+..|+.+++++| +..+++++.+|..|.||+++|.+.
T Consensus 315 L~~A~~~g~~~~v~~L-------------------l~~gad~n~~~~~g~t~L~~A~~~ 354 (437)
T 1n11_A 315 LHVASHYGNIKLVKFL-------------------LQHQADVNAKTKLGYSPLHQAAQQ 354 (437)
T ss_dssp HHHHHHSSCSHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHcCcHHHHHHH-------------------HhcCCCCCCCCCCCCCHHHHHHHC
Confidence 9999999998888777 667889999999999999998764
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=1.8e-45 Score=364.72 Aligned_cols=296 Identities=18% Similarity=0.238 Sum_probs=263.9
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+|+||.|+++|++++|+.||++| ++++.+.+..|.||||+|++.|+.++|++|+++ |++++.+|..+.+|++.
T Consensus 23 ~~~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~--ga~~~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 23 VEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CCCChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHc--CCchhhhccCCCchhHH
Confidence 35889999999999999999999999 889887455699999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccc----------cccchhhHHHHHHh
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KEL----------TTEDRKVIFITSVD 151 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~----------~~~~g~t~L~~a~~ 151 (536)
++..++.++++.+++.++++ +.+|..|.||||+|+..|+.+++++|++.++ ++. .+..|.||||.|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHH
Confidence 99999999999999999996 8999999999999999999999999999987 432 35678999999999
Q ss_pred cCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHH
Q 040056 152 TGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVA 231 (536)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 231 (536)
.|+.++++.|+++.+.+++.+|..|.|++|.++..+. .....+++++|+++|++++.
T Consensus 178 ~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~-------------------~~~~~~i~~lLl~~gad~n~---- 234 (337)
T 4g8k_A 178 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD-------------------DSDVEAITHLLLDHGADVNV---- 234 (337)
T ss_dssp HTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC-------------------TTTHHHHHHHHHHTTCCTTC----
T ss_pred CCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC-------------------cccHHHHHHHHHHCCCCCCC----
Confidence 9999999999998899999999999999998775442 01135688999999999887
Q ss_pred HhhcCCChHHHHHHHcChHHHHHHHHHh-CCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCc
Q 040056 232 EAIRKPTNLLFDAAKVGNIQFLAELIGS-YPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNN 310 (536)
Q Consensus 232 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~-~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~T 310 (536)
++..|.||||+|+..|+.++++.|++. +.+ ++.+|.+|+||||+|++.|+.+++++|+++|++++ +.|
T Consensus 235 -~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n---------~~~ 303 (337)
T 4g8k_A 235 -RGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD---------CGD 303 (337)
T ss_dssp -CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSST---------TCC
T ss_pred -cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC---------CCC
Confidence 456679999999999999999999986 556 89999999999999999999999999999998865 346
Q ss_pred HhHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCcccccc
Q 040056 311 ILHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMK 356 (536)
Q Consensus 311 pLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 356 (536)
|||+|++.++.+++++| +.+|+++|..
T Consensus 304 ~L~~A~~~~~~~iv~~L-------------------l~~GA~~d~~ 330 (337)
T 4g8k_A 304 LVMTARRNYDHSLVKVL-------------------LSHGAKEDFH 330 (337)
T ss_dssp HHHHHHHTTCHHHHHHH-------------------HHTTCCC---
T ss_pred HHHHHHHcCCHHHHHHH-------------------HHCcCCCCCC
Confidence 99999999999988888 7788887653
No 4
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=2.1e-45 Score=365.86 Aligned_cols=304 Identities=21% Similarity=0.196 Sum_probs=243.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
.+.|+||.||+.|+.+.++.++... +.+++.+ |..|.||||+|+..|+.++|++|+++ +.+++.+|..|.||||+|
T Consensus 23 ~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 98 (351)
T 3utm_A 23 YKKDELLEAARSGNEEKLMALLTPL-NVNCHAS-DGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNA 98 (351)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCS-STTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred ccchhHHHHHHcCCHHHHHHHHHhc-CCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCcHHHHH
Confidence 4789999999999999999999986 6778776 89999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++++ ++..+..|.++++.++..+..+.+....
T Consensus 99 ~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~ 177 (351)
T 3utm_A 99 CSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEF 177 (351)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhh
Confidence 9999999999999999996 8899999999999999999999999999998 8888999999999988777666665544
Q ss_pred HhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHH
Q 040056 163 KSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLF 242 (536)
Q Consensus 163 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh 242 (536)
.. +++..++..+ ..+.++.++........ .+..|.||||
T Consensus 178 ~~-------------~~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~~-----~~~~~~t~L~ 216 (351)
T 3utm_A 178 KG-------------HSLLQAAREA-----------------------DLAKVKKTLALEIINFK-----QPQSHETALH 216 (351)
T ss_dssp HH-------------HHHHHHHHTT-----------------------CHHHHHHHTTTCCTTCC-----CTTTCCCHHH
T ss_pred cc-------------cHHHHHHHhc-----------------------cHHHHHHHHHhhccccc-----CCCCCCCHHH
Confidence 32 2444555554 24444444433221111 3345678888
Q ss_pred HHHHc---ChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCC
Q 040056 243 DAAKV---GNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYP 319 (536)
Q Consensus 243 ~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~ 319 (536)
+|+.. ++.+++++|++.+++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|
T Consensus 217 ~A~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n----~~d~~g~t~L~~A~~~~ 291 (351)
T 3utm_A 217 CAVASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMN----ALDSLGQTALHRAALAG 291 (351)
T ss_dssp HHHHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCHHHHHHHHT
T ss_pred HHHHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CcCCCCCCHHHHHHHcC
Confidence 88887 567788888888877 77778888888888888888888888888887765 57888888888888888
Q ss_pred CCCCcccccchHHhhHHHHHHHHHhHhhcCCccccccCCCCCCchhhhHHHhHHHHHh
Q 040056 320 TLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMKNYDGKTPRELFTVEHLELLRR 377 (536)
Q Consensus 320 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~~~~~~~~~ 377 (536)
+.+++++| +..|++++.+|.+|+||++++.+...+++.+
T Consensus 292 ~~~~v~~L-------------------l~~gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 292 HLQTCRLL-------------------LSYGSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp CHHHHHHH-------------------HHTTCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred cHHHHHHH-------------------HHcCCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 77777666 5667778888888888888876655554443
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=3.1e-44 Score=346.50 Aligned_cols=266 Identities=20% Similarity=0.249 Sum_probs=246.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+|+||.|++.|+.+++++|++.+ .+++...+..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 78 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH--GADPVLRKKNGATPFLL 78 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 46899999999999999999999998 677766578899999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-cccc----------ccchhhHHHHHHh
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELT----------TEDRKVIFITSVD 151 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~----------~~~g~t~L~~a~~ 151 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+.. +..|.||||.|+.
T Consensus 79 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~ 157 (285)
T 1wdy_A 79 AAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157 (285)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999998 5554 7789999999999
Q ss_pred cCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHH
Q 040056 152 TGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVA 231 (536)
Q Consensus 152 ~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~ 231 (536)
.|+.+++++|++..+.+++..|..|.||||.|+..++. ....+++++|+++|++++.
T Consensus 158 ~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~-------------------~~~~~i~~~Ll~~g~~~~~---- 214 (285)
T 1wdy_A 158 KGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDD-------------------SDVEAITHLLLDHGADVNV---- 214 (285)
T ss_dssp HTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCT-------------------TTHHHHHHHHHHTTCCSSC----
T ss_pred cCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcccc-------------------chHHHHHHHHHHcCCCCCC----
Confidence 99999999999998889999999999999999998831 1137899999999999887
Q ss_pred HhhcCCChHHHHHHHcChHHHHHHHHH-hCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 232 EAIRKPTNLLFDAAKVGNIQFLAELIG-SYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 232 ~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
.+..|.||||+|++.|+.+++++|++ .+.+ ++.+|..|+||||+|++.|+.+++++|+++|++++
T Consensus 215 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~ 280 (285)
T 1wdy_A 215 -RGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280 (285)
T ss_dssp -CCTTSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred -cCCCCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCC
Confidence 55678999999999999999999999 6777 89999999999999999999999999999999987
No 6
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.5e-42 Score=334.68 Aligned_cols=263 Identities=19% Similarity=0.177 Sum_probs=241.6
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCccccc-ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQ-DENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAA 118 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 118 (536)
+|.||||.|++.|+.+++++|++. +.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHc--CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 578999999999999999999999 7888887 788999999999999999999999999996 889999999999999
Q ss_pred HcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhcc----------ccCcCcHHHHHhcCC
Q 040056 119 LFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTH----------HVQHGTALHMLARNP 187 (536)
Q Consensus 119 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~----------d~~g~t~Lh~a~~~~ 187 (536)
..|+.+++++|+++++ .+..+..|.||||.|+..|+.+++++|++. +.+++.. +..|.||||.|+..+
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~-g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~ 159 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAEKG 159 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHT
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh-CCCcccccccHHHHHhhccCCCcHHHHHHHcC
Confidence 9999999999999998 888999999999999999999999999998 4444444 788999999999999
Q ss_pred CCCCccccchhhhhhhhhhhhHhHHHHHHHHHHH-HhcCCcHHHHHhhcCCChHHHHHHHcCh----HHHHHHHHHhCCC
Q 040056 188 SPFADTVLGIMKCSRNIELMNNQALELVKCLWRE-IVRQEDVDVAEAIRKPTNLLFDAAKVGN----IQFLAELIGSYPD 262 (536)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~~~v~~Ll~~~~~ 262 (536)
..+++++|+++ +.+++. .+..|.||||.|+..++ .+++++|++++++
T Consensus 160 -----------------------~~~~v~~Ll~~~~~~~~~-----~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~ 211 (285)
T 1wdy_A 160 -----------------------HVEVLKILLDEMGADVNA-----CDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD 211 (285)
T ss_dssp -----------------------CHHHHHHHHHTSCCCTTC-----CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC
T ss_pred -----------------------CHHHHHHHHHhcCCCCCc-----cCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC
Confidence 59999999987 888776 45678999999999999 9999999999999
Q ss_pred cccccccCCChhHHHHHHcCChHHHHHHHh-cCcchhhhhccccCCCCcHhHHHhhCCCCCCcccccchHHhhHHHHHHH
Q 040056 263 LVHELDENGRSIFHVAILHRHMNIFNLIYE-QGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELLIY 341 (536)
Q Consensus 263 ~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~-~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~ 341 (536)
++.+|..|+||||+|+..|+.+++++|++ .|++++ .+|..|+||||+|+..++.+++++|
T Consensus 212 -~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~----~~~~~g~t~l~~A~~~~~~~i~~~L-------------- 272 (285)
T 1wdy_A 212 -VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL-------------- 272 (285)
T ss_dssp -SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT----CCCTTSCCHHHHHHHTTCHHHHHHH--------------
T ss_pred -CCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCcc----ccCCCCCcHHHHHHHcCcHHHHHHH--------------
Confidence 89999999999999999999999999999 788876 6999999999999999998888877
Q ss_pred HHhHhhcCCccccccCC
Q 040056 342 KEVEMIVQPSYKEMKNY 358 (536)
Q Consensus 342 ~~~~~~~~~~~~~~~n~ 358 (536)
+..|++++.+|.
T Consensus 273 -----l~~Ga~~~~~d~ 284 (285)
T 1wdy_A 273 -----CKRGASTDCGDL 284 (285)
T ss_dssp -----HHHSSCSCCSSC
T ss_pred -----HHcCCCCCcccc
Confidence 667888887763
No 7
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=9.9e-42 Score=329.19 Aligned_cols=257 Identities=14% Similarity=0.095 Sum_probs=193.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCcc----------chhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCccccc
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRS----------ILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQ 72 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~----------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~ 72 (536)
++|+|+||.|+..|+.+.+..++..+ +. .++. .|.+|.||||+|+..|+.+++++|++. +.+++.+
T Consensus 13 ~~~~~~lH~Aa~~g~~~~~~~~~~~~-~~~~~~~~l~~~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~ 88 (285)
T 3d9h_A 13 GLVPRGSHMASMDGKQGGMDGSKPAG-PRDFPGIRLLSNPLMG-DAVSDWSPMHEAAIHGHQLSLRNLISQ--GWAVNII 88 (285)
T ss_dssp ------------------------------CCSEECCCCTTCS-SSCCSCCHHHHHHHTTCHHHHHHHHHT--TCCSCEE
T ss_pred hHHHHHHHHHhhcCCCCCcccCCCCc-cccccchhhhhCcccC-CCccCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCc
Confidence 57999999999999998888877654 22 2333 388999999999999999999999999 8999999
Q ss_pred ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhc
Q 040056 73 DENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDT 152 (536)
Q Consensus 73 d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~ 152 (536)
|.+|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.++....+..|.||||.|+..
T Consensus 89 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~ 167 (285)
T 3d9h_A 89 TADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARR 167 (285)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHc
Confidence 999999999999999999999999999996 8999999999999999999999999999988222345588999999999
Q ss_pred CchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHH
Q 040056 153 GLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAE 232 (536)
Q Consensus 153 ~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~ 232 (536)
|+.++++.|++. +.+++.+|..|.||||+|+..+ ..+++++|++.|++++.
T Consensus 168 g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~ga~~~~----- 218 (285)
T 3d9h_A 168 GHVECVNSLIAY-GGNIDHKISHLGTPLYLACENQ-----------------------QRACVKKLLESGADVNQ----- 218 (285)
T ss_dssp TCHHHHHHHHHT-TCCTTCCBTTTBCHHHHHHHTT-----------------------CHHHHHHHHHTTCCTTC-----
T ss_pred CCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcC-----------------------cHHHHHHHHHCCCCCCC-----
Confidence 999999888887 6677788888888888888888 57888888888777662
Q ss_pred hhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhc-Ccch
Q 040056 233 AIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQ-GFNK 297 (536)
Q Consensus 233 ~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~ 297 (536)
+..|.||||+|+..|+.+++++|++++++ ++.+|.+|+||||+|+ ++.+++++|+++ +++.
T Consensus 219 -~~~g~t~L~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 219 -GKGQDSPLHAVVRTASEELACLLMDFGAD-TQAKNAEGKRPVELVP--PESPLAQLFLEREGASL 280 (285)
T ss_dssp -CBTTBCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSC--TTSHHHHHHHHHC----
T ss_pred -CCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHhc--CccHHHHHHHHhhccCC
Confidence 35568888888888888888888888887 7888888888888888 456788888887 5544
No 8
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=3.3e-41 Score=321.36 Aligned_cols=248 Identities=18% Similarity=0.130 Sum_probs=194.6
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
++|+||||.|+..|+.++++.|++++ .+++.+ |.+|.||||+|+..|+.+++++|+++ +++++.+|..|.||||+
T Consensus 1 ~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 75 (261)
T 2xai_A 1 MSDWSPMHEAAIHGHQLSLRNLISQG--WAVNII-TADHVSPLHEACLGGHLSCVKILLKH--GAQVNGVTADWHTPLFN 75 (261)
T ss_dssp ---CCHHHHHHHHTCHHHHHHHHHTT--CCSSCC-CTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 46778888888888888888888777 666665 77788888888888888888888887 77777778888888888
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
|+..|+.+++++|+++|+++ + .+.+|.||||+|+..|+.+++++|++.++
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~---------------------------- 125 (261)
T 2xai_A 76 ACVSGSWDCVNLLLQHGASV-Q-PESDLASPIHEAARRGHVECVNSLIAYGG---------------------------- 125 (261)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-S-CSCTTCCHHHHHHHTTCHHHHHHHHHTTC----------------------------
T ss_pred HHHcCCHHHHHHHHHCCCCC-C-CCCCCCCHHHHHHHcCcHHHHHHHHHcCC----------------------------
Confidence 88888888888888887775 3 34457788888888887777777777653
Q ss_pred HhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHH
Q 040056 163 KSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLF 242 (536)
Q Consensus 163 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh 242 (536)
+++..|..|.||||+|+..+ +.+++++|++.|++++. +..|.||||
T Consensus 126 -----~~~~~~~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~g~~~~~------~~~g~t~Lh 171 (261)
T 2xai_A 126 -----NIDHKISHLGTPLYLACENQ-----------------------QRACVKKLLESGADVNQ------GKGQDSPLH 171 (261)
T ss_dssp -----CTTCCBTTTBCHHHHHHHTT-----------------------CHHHHHHHHHHTCCTTC------CBTTBCHHH
T ss_pred -----CCCcCCCCCCCHHHHHHHhC-----------------------CHHHHHHHHHcCCCCCC------CCCCCChHH
Confidence 44566777888888888877 57888888888877763 356799999
Q ss_pred HHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhh----hhccccCCCCcHhHHHhhC
Q 040056 243 DAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQL----LATYLDSCGNNILHLAAKY 318 (536)
Q Consensus 243 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~----~~~~~d~~G~TpLh~A~~~ 318 (536)
+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+ .+++++|++.+..... .++.+|..|+||+|+|.+.
T Consensus 172 ~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~tpl~~A~~~--~~~~~~ll~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~ 248 (261)
T 2xai_A 172 AVARTASEELACLLMDFGAD-TQAKNAEGKRPVELVPPE--SPLAQLFLEREGPPSLMQLCRLRIRKCFGIQQHHKITKL 248 (261)
T ss_dssp HHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCGGGGSCTT--CTHHHHHHHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGS
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCChhhhcccc--ccHHHHHHhccCCccHHHHHHHHHHHHhchhccccCccc
Confidence 99999999999999999999 899999999999999955 4599999998765421 2456899999999999987
Q ss_pred CCCC
Q 040056 319 PTLS 322 (536)
Q Consensus 319 ~~~~ 322 (536)
..++
T Consensus 249 ~~p~ 252 (261)
T 2xai_A 249 VLPE 252 (261)
T ss_dssp SSCH
T ss_pred CCcH
Confidence 7654
No 9
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.4e-40 Score=327.83 Aligned_cols=277 Identities=19% Similarity=0.153 Sum_probs=242.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccC-CCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDEN-GNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYF 116 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 116 (536)
+.+|+||||.||+.|+.++|++|+++ |+++|.++.. |.||||+|+..|+.++|++|+++|+++ +.++..+.+|++.
T Consensus 22 ~~~~~t~L~~Av~~g~~~~V~~LL~~--Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~ 98 (337)
T 4g8k_A 22 AVEDNHLLIKAVQNEDVDLVQQLLEG--GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFIL 98 (337)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHH
T ss_pred CCCCChHHHHHHHcCCHHHHHHHHHC--CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCch-hhhccCCCchhHH
Confidence 44578999999999999999999999 8999988765 999999999999999999999999996 8999999999999
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhh----------hccccCcCcHHHHHhc
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLA----------LTHHVQHGTALHMLAR 185 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~----------~~~d~~g~t~Lh~a~~ 185 (536)
++..++.+++..+++.++ .+..|..|.||+|.|+..|+.++++.+++. +.++ ...+..|.||||+|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~-ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~ 177 (337)
T 4g8k_A 99 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR-GANVNLRRKTKEDQERLRKGGATALMDAAE 177 (337)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT-TCCTTCCCCCC-----CTTCSCCHHHHHHH
T ss_pred HHhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHc-CCCcchhhccccccccccCCCCcHHHHHHH
Confidence 999999999999999998 888999999999999999999999999988 3333 2346679999999999
Q ss_pred CCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHH-HhcCCcHHHHHhhcCCChHHHHHHHcCh----HHHHHHHHHhC
Q 040056 186 NPSPFADTVLGIMKCSRNIELMNNQALELVKCLWRE-IVRQEDVDVAEAIRKPTNLLFDAAKVGN----IQFLAELIGSY 260 (536)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~----~~~v~~Ll~~~ 260 (536)
.| +.+++++|+++ |++++. .+..|.|++|.++..++ .++++.|+++|
T Consensus 178 ~g-----------------------~~~~v~~LL~~~gad~n~-----~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g 229 (337)
T 4g8k_A 178 KG-----------------------HVEVLKILLDEMGADVNA-----CDNMGRNALIHALLSSDDSDVEAITHLLLDHG 229 (337)
T ss_dssp HT-----------------------CHHHHHHHHHHSCCCTTC-----CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT
T ss_pred CC-----------------------CHHHHHHHHhccCCCcCc-----cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC
Confidence 99 58999999975 788876 55778999998887543 46889999999
Q ss_pred CCcccccccCCChhHHHHHHcCChHHHHHHHhc-CcchhhhhccccCCCCcHhHHHhhCCCCCCcccccchHHhhHHHHH
Q 040056 261 PDLVHELDENGRSIFHVAILHRHMNIFNLIYEQ-GFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELL 339 (536)
Q Consensus 261 ~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~-~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~ 339 (536)
++ ++.+|..|+||||+|+..|+.++++.|++. |++++ .+|.+|+||||+|++.|+.+++++|
T Consensus 230 ad-~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn----~~d~~G~TpL~~A~~~g~~~iv~~L------------ 292 (337)
T 4g8k_A 230 AD-VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN----DTDSDGKTALLLAVELKLKKIAELL------------ 292 (337)
T ss_dssp CC-TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT----CBCTTSCBHHHHHHHTTCHHHHHHH------------
T ss_pred CC-CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc----CcCCCCCCHHHHHHHcCCHHHHHHH------------
Confidence 99 899999999999999999999999999985 66655 7999999999999999999888887
Q ss_pred HHHHhHhhcCCccccccCCCCCCchhhhHHH-hHHHH
Q 040056 340 IYKEVEMIVQPSYKEMKNYDGKTPRELFTVE-HLELL 375 (536)
Q Consensus 340 ~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~~-~~~~~ 375 (536)
+..|++++ +++|+++|.+. +.+++
T Consensus 293 -------l~~GAd~n-----~~~~L~~A~~~~~~~iv 317 (337)
T 4g8k_A 293 -------CKRGASTD-----CGDLVMTARRNYDHSLV 317 (337)
T ss_dssp -------HTTSCSST-----TCCHHHHHHHTTCHHHH
T ss_pred -------HHCCCCCC-----CCCHHHHHHHcCCHHHH
Confidence 66787664 45799998764 34443
No 10
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=3.3e-41 Score=338.36 Aligned_cols=256 Identities=16% Similarity=0.123 Sum_probs=217.4
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHH--------hcCCCCccccccc
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLL--------NFMDPEDLILQDE 74 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~~~d~ 74 (536)
..|+||||.|+..|+ ++++.|+.. +++...+..|.||||+|+..|+.+++++|+ +. |++++.+|.
T Consensus 92 ~~g~t~L~~Aa~~~~-~~~~~L~~~----~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~--ga~vn~~d~ 164 (373)
T 2fo1_E 92 PESPIKLHTEAAGSY-AITEPITRE----SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAA--GADVNAMDC 164 (373)
T ss_dssp --CCCHHHHHHHSSS-CCCSCCSTT----TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHT--CCCTTCCCT
T ss_pred CCCccHHHHHhcCCc-hHHHHhccc----cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhc--CCCCcCCCC
Confidence 458999999999655 677776543 466552378999999999999998888876 56 899999999
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcC---c-ccccccchhhHHHHHH
Q 040056 75 NGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS---K-KELTTEDRKVIFITSV 150 (536)
Q Consensus 75 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~---~-~~~~~~~g~t~L~~a~ 150 (536)
.|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+ . .+..|..|.||||+|+
T Consensus 165 ~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 165 DENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp TSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 9999999999999999999999999996 889999999999999999999999999987 3 6778999999999999
Q ss_pred hcC---chHHHHHHHHhChhhhhc--------cccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHH
Q 040056 151 DTG---LYDLALKLLKSDRQLALT--------HHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLW 219 (536)
Q Consensus 151 ~~~---~~~~~~~ll~~~~~~~~~--------~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 219 (536)
..+ +.++++.|++. +.+++. .|..|.||||+|+..+ +.+++++|+
T Consensus 244 ~~~~~~~~~~v~~Ll~~-g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g-----------------------~~~~v~~Ll 299 (373)
T 2fo1_E 244 HNEGRDQVASAKLLVEK-GAKVDYDGAARKDSEKYKGRTALHYAAQVS-----------------------NMPIVKYLV 299 (373)
T ss_dssp HSCSTTHHHHHHHHHHH-TCCSSCCSGGGTSSSSCCCCCTHHHHHSSC-----------------------CHHHHHHHH
T ss_pred HhCCcchHHHHHHHHHC-CCCcccccccccCcccccCCCHHHHHHHhC-----------------------CHHHHHHHH
Confidence 988 89999999998 444443 5668899999999888 588899998
Q ss_pred HHH-hcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcc
Q 040056 220 REI-VRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFN 296 (536)
Q Consensus 220 ~~~-~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 296 (536)
+++ .+++. .+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|++++++
T Consensus 300 ~~~~~~~n~-----~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~ 371 (373)
T 2fo1_E 300 GEKGSNKDK-----QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRCRPE 371 (373)
T ss_dssp HHSCCCTTC-----CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC--
T ss_pred HhcCCCccC-----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 876 77766 556778999999999999999999998888 788888999999999999999999999888765
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=9.5e-42 Score=342.31 Aligned_cols=261 Identities=14% Similarity=0.183 Sum_probs=227.0
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-cCCCcHHHHHHHcCCHHHHHHHH--------hcCCCcccCCC
Q 040056 37 ITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQD-ENGNTAFCFAAAAGAVDIANLML--------KKNPSLLGIRG 107 (536)
Q Consensus 37 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~ 107 (536)
.+..|.||||+|+..++ +++++|++ .+++.+| ..|.||||+|+..|+.+++++|+ +.|+++ +.+|
T Consensus 90 ~~~~g~t~L~~Aa~~~~-~~~~~L~~----~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d 163 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGSY-AITEPITR----ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMD 163 (373)
T ss_dssp ----CCCHHHHHHHSSS-CCCSCCST----TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCC
T ss_pred CCCCCccHHHHHhcCCc-hHHHHhcc----ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Confidence 37889999999999665 77777754 4678888 78999999999999998887776 789996 8999
Q ss_pred CCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhCh--hhhhccccCcCcHHHHHh
Q 040056 108 SKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDR--QLALTHHVQHGTALHMLA 184 (536)
Q Consensus 108 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~--~~~~~~d~~g~t~Lh~a~ 184 (536)
.+|.||||+|+..|+.+++++|+++|+ ++..+..|.||||+|+..|+.++++.|++..+ .+++..|..|.||||+|+
T Consensus 164 ~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~ 243 (373)
T 2fo1_E 164 CDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA 243 (373)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHH
Confidence 999999999999999999999999999 88899999999999999999999999999842 677889999999999999
Q ss_pred cCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHH---HHhhcCCChHHHHHHHcChHHHHHHHHHhCC
Q 040056 185 RNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDV---AEAIRKPTNLLFDAAKVGNIQFLAELIGSYP 261 (536)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~---~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~ 261 (536)
..+. ....+++++|++.|++++.... ...+..|.||||+|+..|+.+++++|++++.
T Consensus 244 ~~~~--------------------~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 244 HNEG--------------------RDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303 (373)
T ss_dssp HSCS--------------------TTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred HhCC--------------------cchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence 8761 1258999999999998875221 1134578999999999999999999999873
Q ss_pred CcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 262 DLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 262 ~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
..++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..|+.+++++|
T Consensus 304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~----~~d~~g~t~l~~A~~~g~~~iv~~L 365 (373)
T 2fo1_E 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVE----AVDATDHTARQLAQANNHHNIVDIF 365 (373)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS----CCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc----CCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3389999999999999999999999999999999976 6999999999999999998887776
No 12
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.1e-39 Score=324.66 Aligned_cols=266 Identities=16% Similarity=0.138 Sum_probs=240.8
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..|+||||.|+..|+.+++++|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 56 ~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~g~~~iv~~Ll~~--g~~~~~~~~~g~t~L~~ 130 (351)
T 3utm_A 56 GRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAK-DKGGLVPLHNACSYGHYEVTELLLKH--GACVNAMDLWQFTPLHE 130 (351)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcc-CCCCCcHHHHHHHCCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 45899999999999999999999998 788877 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
|+..|+.+++++|+++|++. +..+..|.||+++|+..+..+.+++... ..++..++..+..+.+..++
T Consensus 131 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~l 198 (351)
T 3utm_A 131 AASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFK-----------GHSLLQAAREADLAKVKKTL 198 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhc-----------ccHHHHHHHhccHHHHHHHH
Confidence 99999999999999999996 8999999999999998888888777653 35677788888899999988
Q ss_pred HhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHH
Q 040056 163 KSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLF 242 (536)
Q Consensus 163 ~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh 242 (536)
.... .....+..|.||||+|+..+ +....+++++|++.|.+++. .+..|.||||
T Consensus 199 ~~~~-~~~~~~~~~~t~L~~A~~~~--------------------~~~~~~~~~~Ll~~g~~~~~-----~~~~g~t~L~ 252 (351)
T 3utm_A 199 ALEI-INFKQPQSHETALHCAVASL--------------------HPKRKQVAELLLRKGANVNE-----KNKDFMTPLH 252 (351)
T ss_dssp TTCC-TTCCCTTTCCCHHHHHHHCC--------------------STTHHHHHHHHHHTTCCTTC-----CCTTCCCHHH
T ss_pred Hhhc-ccccCCCCCCCHHHHHHHHh--------------------CccHHHHHHHHHHcCCCcCC-----cCCCCCCHHH
Confidence 8743 33456788999999999985 22268999999999999887 5577899999
Q ss_pred HHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHh
Q 040056 243 DAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAA 316 (536)
Q Consensus 243 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~ 316 (536)
+|++.|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||+|+|.
T Consensus 253 ~A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~~~~g~tal~~a~ 321 (351)
T 3utm_A 253 VAAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPS----IISLQGFTAAQMGN 321 (351)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----CCCTTSCCHHHHSC
T ss_pred HHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC----CcCCCCCChhhhhh
Confidence 99999999999999999999 89999999999999999999999999999999987 59999999999983
No 13
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=2.4e-40 Score=319.04 Aligned_cols=247 Identities=17% Similarity=0.114 Sum_probs=181.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCc---ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPED---LILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPL 114 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 114 (536)
|.+|.||||+|++.|+.++|++|++. +.+ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL 82 (282)
T 1oy3_D 6 TEDGDTALHLAVIHQHEPFLDFLLGF--SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHTAL 82 (282)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHH--HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHhc--CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHH
Confidence 78888888888888888888888887 444 7788888888888888888888888888888885 78888888888
Q ss_pred HHHHHcCCHHHHHHhhhcCcc--------------cccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHH
Q 040056 115 YFAALFGQTDTASFLFHRSKK--------------ELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTAL 180 (536)
Q Consensus 115 ~~A~~~g~~~~v~~Ll~~~~~--------------~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~L 180 (536)
|+|+..|+.+++++|++.++. ......+.++++.+...+........+...+.+++..|..|.|||
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L 162 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL 162 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred HHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHH
Confidence 888888888888888887751 112234566777777766666666666666778888999999999
Q ss_pred HHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhc-CCChHHHHHHHcChHHHHHHHHHh
Q 040056 181 HMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIR-KPTNLLFDAAKVGNIQFLAELIGS 259 (536)
Q Consensus 181 h~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~Ll~~ 259 (536)
|+|+..+ +.+++++|+++|++++. .+. .|.||||+|+..|+.+++++|+++
T Consensus 163 ~~A~~~g-----------------------~~~~v~~Ll~~g~~~~~-----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ 214 (282)
T 1oy3_D 163 HVAVIHK-----------------------DAEMVRLLRDAGADLNK-----PEPTCGRTPLHLAVEAQAASVLELLLKA 214 (282)
T ss_dssp HHHHHTT-----------------------CHHHHHHHHHHTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcC-----------------------CHHHHHHHHHcCCCCCC-----CCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999 69999999999998886 333 389999999999999999999999
Q ss_pred CCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCC
Q 040056 260 YPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPT 320 (536)
Q Consensus 260 ~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~ 320 (536)
|++ ++.+|..|+||||+|+.+|+.+++++|+++|++++ .+|..|.|||++|.....
T Consensus 215 gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 215 GAD-PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP----EDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TCC-TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCC----CCC---------------
T ss_pred CCC-CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcC----cCCCcccccccccCCccc
Confidence 999 89999999999999999999999999999999977 699999999999987654
No 14
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=2.2e-40 Score=319.78 Aligned_cols=251 Identities=16% Similarity=0.094 Sum_probs=200.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcC---------CCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCC
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFM---------DPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGS 108 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 108 (536)
...|.|+||+|+..|+.+.+..++... ....++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.
T Consensus 12 ~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~~ 90 (285)
T 3d9h_A 12 SGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIITA 90 (285)
T ss_dssp ------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEECT
T ss_pred chHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCC
Confidence 578999999999999987777765442 02236778999999999999999999999999999996 88999
Q ss_pred CCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCC
Q 040056 109 KNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 109 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~ 187 (536)
+|.||||+|+..|+.+++++|++.++ .+..|..|.||||+|+..|+.++++.|++. +.+++ .+.+|.||||+|+..+
T Consensus 91 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~g 168 (285)
T 3d9h_A 91 DHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH-GASVQ-PESDLASPIHEAARRG 168 (285)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCSS-CSCTTSCHHHHHHHHT
T ss_pred CCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC-CCCCC-CCCCCCCHHHHHHHcC
Confidence 99999999999999999999999998 888999999999999999999999999998 44444 3456999999999999
Q ss_pred CCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCccccc
Q 040056 188 SPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHEL 267 (536)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~ 267 (536)
..+++++|++.+.+++. .+..|.||||+|+..|+.+++++|++.+++ ++ .
T Consensus 169 -----------------------~~~~v~~Ll~~g~~~~~-----~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~ 218 (285)
T 3d9h_A 169 -----------------------HVECVNSLIAYGGNIDH-----KISHLGTPLYLACENQQRACVKKLLESGAD-VN-Q 218 (285)
T ss_dssp -----------------------CHHHHHHHHHTTCCTTC-----CBTTTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-C
T ss_pred -----------------------CHHHHHHHHHCCCCCCC-----cCCCCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-C
Confidence 59999999999998877 557789999999999999999999999999 66 4
Q ss_pred ccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 268 DENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 268 d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
|..|+||||+|+..++.+++++|+++|++++ .+|.+|+||||+|+.. .+++++|
T Consensus 219 ~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~A~~~--~~~~~~L 272 (285)
T 3d9h_A 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQ----AKNAEGKRPVELVPPE--SPLAQLF 272 (285)
T ss_dssp CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCGGGGSCTT--SHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC----CcCCCCCCHHHHhcCc--cHHHHHH
Confidence 8999999999999999999999999999876 6999999999999943 3444444
No 15
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=2.1e-40 Score=315.86 Aligned_cols=225 Identities=15% Similarity=0.069 Sum_probs=192.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +.+++. +.+|.||||+
T Consensus 34 ~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~ 107 (261)
T 2xai_A 34 ADHVSPLHEACLGGHLSCVKILLKHG--AQVNGV-TADWHTPLFNACVSGSWDCVNLLLQH--GASVQP-ESDLASPIHE 107 (261)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSSC-SCTTCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCC-CCCCCCHHHH
Confidence 46899999999999999999999998 888877 99999999999999999999999999 788774 5569999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.++ ++ .+..|.||||+|+..|+.++++.|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~g~t~Lh~A~~~~~~~~v~~L 185 (261)
T 2xai_A 108 AARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLL 185 (261)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT-CCBTTBCHHHHHHHHTCHHHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCChHHHHHHcCCHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999998 54 488999999999999999999999
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
++. +.+++.+|.+|.||+|+|+.++ ++++.|++++.......
T Consensus 186 l~~-gad~~~~d~~g~tpl~~A~~~~-------------------------~~~~~ll~~~~~~~l~~------------ 227 (261)
T 2xai_A 186 MDF-GADTQAKNAEGKRPVELVPPES-------------------------PLAQLFLEREGPPSLMQ------------ 227 (261)
T ss_dssp HHT-TCCTTCCCTTSCCGGGGSCTTC-------------------------THHHHHHHC-CCCCHHH------------
T ss_pred HHc-CCCCCCcCCCCCChhhhccccc-------------------------cHHHHHHhccCCccHHH------------
Confidence 998 8888999999999999999665 35666666543322110
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHh
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYE 292 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 292 (536)
+ .+ ++.+|..|+||+|.|.+....+.++-++.
T Consensus 228 --------------~----~~-~~~r~~~g~t~l~~~~~~~~p~~l~~~l~ 259 (261)
T 2xai_A 228 --------------L----CR-LRIRKCFGIQQHHKITKLVLPEDLKQFLL 259 (261)
T ss_dssp --------------H----HH-HHHHTTSCTTCGGGGGGSSSCHHHHHHHT
T ss_pred --------------H----HH-HHHHHHhchhccccCcccCCcHHHHHHHh
Confidence 0 01 44577888888888888877777665553
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=4.7e-41 Score=336.59 Aligned_cols=257 Identities=15% Similarity=0.081 Sum_probs=226.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
|.+|.||||+|+..|+.++|++|++. +.+++.+|..|.||||+|+..|+.++|++|++.|++. .+.+|.||||+|
T Consensus 17 d~~g~t~L~~Aa~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~~A 91 (364)
T 3ljn_A 17 DDENMEKIHVAARKGQTDEVRRLIET--GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIHLA 91 (364)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHHHH
Confidence 78899999999999999999999999 8999999999999999999999999999999999864 345799999999
Q ss_pred HHcCCHHHHHHhhhc----Cc-ccc-----------------cccchhhHHHHHHhcC--chHHHHHHHHhChhhhhccc
Q 040056 118 ALFGQTDTASFLFHR----SK-KEL-----------------TTEDRKVIFITSVDTG--LYDLALKLLKSDRQLALTHH 173 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~----~~-~~~-----------------~~~~g~t~L~~a~~~~--~~~~~~~ll~~~~~~~~~~d 173 (536)
+..|+.+++++|++. +. ++. .+..|.||||+|+..| +.++++.|++. +.+++..|
T Consensus 92 ~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~-ga~~~~~d 170 (364)
T 3ljn_A 92 VMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKD 170 (364)
T ss_dssp HHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH-TCCTTCCC
T ss_pred HHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc-CCCCcccC
Confidence 999999999999998 54 444 7788999999999999 99999999999 78889999
Q ss_pred cCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHH
Q 040056 174 VQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFL 253 (536)
Q Consensus 174 ~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v 253 (536)
..|.||||+|+..+ ..+++++|+++|++....+....+..|.||||+|+..|+.+++
T Consensus 171 ~~g~t~L~~A~~~g-----------------------~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v 227 (364)
T 3ljn_A 171 KADETPLMRAMEFR-----------------------NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVA 227 (364)
T ss_dssp TTSCCHHHHHHHTT-----------------------CHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHH
T ss_pred CCCCCHHHHHHHcC-----------------------CHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHH
Confidence 99999999999999 5999999999998822222222567789999999999999999
Q ss_pred HHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhh--------hccccCCCCcHhHHHhhCCCCCCc
Q 040056 254 AELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLL--------ATYLDSCGNNILHLAAKYPTLSPY 324 (536)
Q Consensus 254 ~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~--------~~~~d~~G~TpLh~A~~~~~~~~~ 324 (536)
++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++.+.. ....+..|+||+++|+..++.+.+
T Consensus 228 ~~Ll~~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v 305 (364)
T 3ljn_A 228 MRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305 (364)
T ss_dssp HHHHTTTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHH
T ss_pred HHHHHcCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHH
Confidence 999999999 8999999999999999999999999999999876421 112678899999999988765433
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=2.4e-40 Score=313.97 Aligned_cols=227 Identities=15% Similarity=0.084 Sum_probs=129.2
Q ss_pred chhhhcCCCCCcHHHHHHhcC-------------CHHHHHHHHhcCCCCccc-ccccCCCcHHHHHHHcCCHHHHHHHHh
Q 040056 32 ILCAAITDGHETVLHVATGAK-------------RTSFVQQLLNFMDPEDLI-LQDENGNTAFCFAAAAGAVDIANLMLK 97 (536)
Q Consensus 32 ~~~~~~~~~g~t~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~-~~d~~g~tpLh~A~~~g~~~iv~~Ll~ 97 (536)
+++.+ |.+|.||||+|+..| +.+++++|++. +.+++ .+|..|.||||+|+..|+.+++++|++
T Consensus 2 dvn~~-d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~ 78 (253)
T 1yyh_A 2 DVNVR-GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLE 78 (253)
T ss_dssp -----------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCC-CCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHc--cCCcccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 45655 888899999988877 77888888887 56654 357778888888888888888888888
Q ss_pred cCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcC
Q 040056 98 KNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHG 177 (536)
Q Consensus 98 ~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~ 177 (536)
+|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+++..+..|.
T Consensus 79 ~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~--------------------------------~~~~~~~~~g~ 125 (253)
T 1yyh_A 79 ASADA-NIQDNMGRTPLHAAVSADAQGVFQILIRNRA--------------------------------TDLDARMHDGT 125 (253)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTT--------------------------------SCTTCCCTTCC
T ss_pred cCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC--------------------------------CCccccCCCCC
Confidence 88875 7777788888888888888888888877764 23334445555
Q ss_pred cHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHH
Q 040056 178 TALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELI 257 (536)
Q Consensus 178 t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll 257 (536)
||||+|+..+ ..+++++|++.|.+++. .+..|.||||+|+..|+.+++++|+
T Consensus 126 t~L~~A~~~~-----------------------~~~~v~~Ll~~g~~~~~-----~d~~g~t~L~~A~~~~~~~~v~~Ll 177 (253)
T 1yyh_A 126 TPLILAARLA-----------------------VEGMLEDLINSHADVNA-----VDDLGKSALHWAAAVNNVDAAVVLL 177 (253)
T ss_dssp CHHHHHHHHT-----------------------CSSHHHHHHHTTCCTTC-----BCTTSCBHHHHHHHHTCHHHHHHHH
T ss_pred cHHHHHHHcC-----------------------hHHHHHHHHHcCCCCCC-----cCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 5555555554 34455555555555444 3344566666666666777777777
Q ss_pred HhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 258 GSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 258 ~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
+++++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|++.|+.+++++|
T Consensus 178 ~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 178 KNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFANRD----ITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc----ccccCCCCHHHHHHHcCCHHHHHHH
Confidence 77766 66677777777777777777777777777776655 4677777777777777776655544
No 18
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.9e-39 Score=307.79 Aligned_cols=227 Identities=20% Similarity=0.182 Sum_probs=165.4
Q ss_pred ccccHHHHHHHHcC-------------CHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc
Q 040056 3 FSIRLLLYKASLKG-------------EMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL 69 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g-------------~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 69 (536)
.+|+||||.|+..| +.++++.|++.+ .+++...|..|.||||+|+..|+.+++++|+++ +.++
T Consensus 8 ~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~ 83 (253)
T 1yyh_A 8 PDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADA 83 (253)
T ss_dssp ----------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred CCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHcc--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 46999999999987 999999999999 566555589999999999999999999999999 8999
Q ss_pred cccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHH
Q 040056 70 ILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITS 149 (536)
Q Consensus 70 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a 149 (536)
+.+|..|.||||+|+..|+.+++++|++.++...+.++..|.||||+|+..|+.+++++|++.++
T Consensus 84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~--------------- 148 (253)
T 1yyh_A 84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA--------------- 148 (253)
T ss_dssp TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTC---------------
T ss_pred CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCC---------------
Confidence 99999999999999999999999999999984358899999999999999999999999998875
Q ss_pred HhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHH
Q 040056 150 VDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVD 229 (536)
Q Consensus 150 ~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~ 229 (536)
+++.+|..|.||||+|+..+ ..+++++|+++|++++.
T Consensus 149 ------------------~~~~~d~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~ga~~~~-- 185 (253)
T 1yyh_A 149 ------------------DVNAVDDLGKSALHWAAAVN-----------------------NVDAAVVLLKNGANKDM-- 185 (253)
T ss_dssp ------------------CTTCBCTTSCBHHHHHHHHT-----------------------CHHHHHHHHHTTCCTTC--
T ss_pred ------------------CCCCcCCCCCCHHHHHHHcC-----------------------CHHHHHHHHHcCCCCCC--
Confidence 23345555666666666655 35666666666666554
Q ss_pred HHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCc
Q 040056 230 VAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGF 295 (536)
Q Consensus 230 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~ 295 (536)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+++|+.+++++|.+...
T Consensus 186 ---~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 186 ---QNNREETPLFLAAREGSYETAKVLLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp ---CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred ---cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-ccccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 345668888888888899999999999999 88999999999999999999999999987653
No 19
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=7.8e-40 Score=327.69 Aligned_cols=259 Identities=12% Similarity=0.015 Sum_probs=232.7
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.||..|+.++|++|++.+ .+++.+ |..|.||||+|+..|+.++|++|++. +.+++ +.+|.||||+
T Consensus 18 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~--~~~g~t~L~~ 90 (364)
T 3ljn_A 18 DENMEKIHVAARKGQTDEVRRLIETG--VSPTIQ-NRFGCTALHLACKFGCVDTAKYLASV--GEVHS--LWHGQKPIHL 90 (364)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTCCCHHHHHHHHCCHHHHHHHHHH--CCCCC--CBTTBCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCcccc-CCCCCcHHHHHHHcCCHHHHHHHHHC--CCCcc--ccCCCCHHHH
Confidence 35899999999999999999999998 788877 99999999999999999999999999 66443 4579999999
Q ss_pred HHHcCCHHHHHHHHhc----CCCcccC-----------------CCCCCCcHHHHHHHcC--CHHHHHHhhhcCc-cccc
Q 040056 83 AAAAGAVDIANLMLKK----NPSLLGI-----------------RGSKNMPPLYFAALFG--QTDTASFLFHRSK-KELT 138 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~~v~~Ll~~~~-~~~~ 138 (536)
|+..|+.+++++|++. +.+. +. +|.+|.||||+|+..| +.+++++|++.++ ++..
T Consensus 91 A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 91 AVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 9999999999999998 7764 44 7889999999999999 9999999999998 8889
Q ss_pred ccchhhHHHHHHhcCchHHHHHHHHhChhh-----hhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHH
Q 040056 139 TEDRKVIFITSVDTGLYDLALKLLKSDRQL-----ALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALE 213 (536)
Q Consensus 139 ~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~-----~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (536)
|..|.||||+|+..|+.++++.|++. +.+ ++..|..|.||||+|+..+ ..+
T Consensus 170 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~g~t~L~~A~~~g-----------------------~~~ 225 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNREALDLMMDT-VPSKSSLRLDYANKQGNSHLHWAILIN-----------------------WED 225 (364)
T ss_dssp CTTSCCHHHHHHHTTCHHHHHHHHHH-CSCSSSCCTTCCCTTCCCTTHHHHTTT-----------------------CHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHhc-ccccccccccccCCCCCcHHHHHHHcC-----------------------CHH
Confidence 99999999999999999999999998 343 7889999999999999999 599
Q ss_pred HHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCc-----------ccccccCCChhHHHHHHcC
Q 040056 214 LVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDL-----------VHELDENGRSIFHVAILHR 282 (536)
Q Consensus 214 ~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~-----------~~~~d~~g~t~Lh~A~~~~ 282 (536)
++++|+++|++++. .+..|.||||+|+..|+.+++++|++++++. ....+..|+||++.|+..+
T Consensus 226 ~v~~Ll~~gad~~~-----~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 226 VAMRFVEMGIDVNM-----EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp HHHHHHTTTCCTTC-----CCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred HHHHHHHcCCCCCC-----CCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhcc
Confidence 99999999999887 5678899999999999999999999997662 1225778999999999999
Q ss_pred ChHHHHHHHhcCcchh
Q 040056 283 HMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 283 ~~~iv~~Ll~~~~~~~ 298 (536)
+.+.+..|++.+.+..
T Consensus 301 ~~~~v~~ll~~~~~~~ 316 (364)
T 3ljn_A 301 SKQEVLQLLQEKLDEV 316 (364)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 8888888888876653
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=3.2e-38 Score=294.93 Aligned_cols=226 Identities=18% Similarity=0.180 Sum_probs=187.4
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
.+.+|||.|++.|+.+.++++++.+ +..++.. |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 5 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 80 (231)
T 3aji_A 5 VSNIMICNLAYSGKLDELKERILAD-KSLATRT-DQDSRTALHWACSAGHTEIVEFLLQL--GVPVNDKDDAGWSPLHIA 80 (231)
T ss_dssp CSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHH
T ss_pred cccchHHHHHHhCCHHHHHHHHHhc-hhhhhcC-CCCCCCHHHHHHHcCcHHHHHHHHHh--CCCCCCcCCCCCCHHHHH
Confidence 4789999999999999999999988 5556555 88999999999999999999999999 888999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLK 163 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~ 163 (536)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~----------------------------- 130 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGA----------------------------- 130 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-----------------------------
T ss_pred HHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC-----------------------------
Confidence 9999999999999999996 8889999999999999999999999998765
Q ss_pred hChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHH
Q 040056 164 SDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFD 243 (536)
Q Consensus 164 ~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~ 243 (536)
+++.+|..|.||||+|+..+ +.+++++|++++.+++. .+..|.||||+
T Consensus 131 ----~~~~~~~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~g~~~~~-----~~~~g~t~L~~ 178 (231)
T 3aji_A 131 ----NPDAKDHYDATAMHRAAAKG-----------------------NLKMVHILLFYKASTNI-----QDTEGNTPLHL 178 (231)
T ss_dssp ----CTTCCCTTSCCHHHHHHHHT-----------------------CHHHHHHHHHTTCCSCC-----CCTTSCCHHHH
T ss_pred ----CCCCcCCCCCcHHHHHHHcC-----------------------CHHHHHHHHhcCCCccc-----cCCCCCCHHHH
Confidence 22344555566666666555 35566666665555554 33556788888
Q ss_pred HHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcc
Q 040056 244 AAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFN 296 (536)
Q Consensus 244 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~ 296 (536)
|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.++|++
T Consensus 179 A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 179 ACDEERVEEAKFLVTQGAS-IYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 8888888999999999888 788999999999999999999999999888754
No 21
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3.5e-38 Score=295.87 Aligned_cols=221 Identities=16% Similarity=0.148 Sum_probs=183.6
Q ss_pred chhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCC
Q 040056 32 ILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNM 111 (536)
Q Consensus 32 ~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 111 (536)
+++.+ |.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.++..|.
T Consensus 3 ~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~ 78 (237)
T 3b7b_A 3 NFKME-HQNKRSPLHAAAEAGHVDICHMLVQA--GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGS 78 (237)
T ss_dssp CCCCS-SCCSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSC
T ss_pred Ccccc-cCCCCCHHHHHHHcCcHHHHHHHHHc--CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCC
Confidence 34444 77888888888888888888888888 7888888888888888888888888888888888885 77788888
Q ss_pred cHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCC
Q 040056 112 PPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFA 191 (536)
Q Consensus 112 tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~ 191 (536)
||||+|+..|+.+++++|++.++ .+++..|..|.||||+|+..+
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~--------------------------------~~~~~~~~~g~t~L~~A~~~~---- 122 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQ--------------------------------MDVNCQDDGGWTPMIWATEYK---- 122 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTC--------------------------------CCTTCCCTTSCCHHHHHHHTT----
T ss_pred cHHHHHHHcCCHHHHHHHHhCCC--------------------------------CCcccCCCCCCCHHHHHHHcC----
Confidence 88888888888888888887762 344456666777777777776
Q ss_pred ccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCC
Q 040056 192 DTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENG 271 (536)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g 271 (536)
..+++++|+++|.+++. .+..|.||||+|+..|+.+++++|++++++ ++.+|..|
T Consensus 123 -------------------~~~~~~~Ll~~g~~~~~-----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g 177 (237)
T 3b7b_A 123 -------------------HVDLVKLLLSKGSDINI-----RDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHG 177 (237)
T ss_dssp -------------------CHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTC
T ss_pred -------------------CHHHHHHHHHCCCCCCc-----cCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCC
Confidence 46777777777766665 445678999999999999999999999999 89999999
Q ss_pred ChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCC
Q 040056 272 RSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTL 321 (536)
Q Consensus 272 ~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~ 321 (536)
+||||+|+..++.+++++|+++|++++ .+|.+|+||||+|+..++.
T Consensus 178 ~t~L~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~A~~~~~~ 223 (237)
T 3b7b_A 178 DSPLHIAARENRYDCVVLFLSRDSDVT----LKNKEGETPLQCASLNSQV 223 (237)
T ss_dssp CCHHHHHHHTTCHHHHHHHHTTTCCTT----CCCTTSCCHHHHSCTTCHH
T ss_pred CCHHHHHHHhCCHhHHHHHHHcCCCCC----ccCCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999876 5899999999999998874
No 22
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.2e-38 Score=299.61 Aligned_cols=226 Identities=15% Similarity=0.125 Sum_probs=174.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhc---CCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNF---MDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPL 114 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~---~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 114 (536)
|.+|.||||+|++.|+.+++++|++. . +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.|||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l 83 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQG-GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAA 83 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHT-TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhc-CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHH
Confidence 88899999999999999999998872 2 7788888999999999999999999999999999885 78888999999
Q ss_pred HHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccc
Q 040056 115 YFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTV 194 (536)
Q Consensus 115 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 194 (536)
|+|+..|+.+++++|++.++.. ..+++..|..|.||||+|+..+
T Consensus 84 ~~A~~~~~~~~~~~Ll~~~~~~-----------------------------~~~~~~~~~~g~t~L~~A~~~~------- 127 (241)
T 1k1a_A 84 HLACEHRSPTCLRALLDSAAPG-----------------------------TLDLEARNYDGLTALHVAVNTE------- 127 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTT-----------------------------SCCTTCCCTTSCCHHHHHHHHT-------
T ss_pred HHHHHcCCHHHHHHHHHcCCCc-----------------------------cccccccCcCCCcHHHHHHHcC-------
Confidence 9999999999999998876410 1123345556666666666665
Q ss_pred cchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhh-cCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCCh
Q 040056 195 LGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAI-RKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRS 273 (536)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~-~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 273 (536)
..+++++|++.|.+++. .+ ..|.||||+|+..|+.+++++|++++++ ++.+|..|+|
T Consensus 128 ----------------~~~~~~~Ll~~g~~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t 185 (241)
T 1k1a_A 128 ----------------CQETVQLLLERGADIDA-----VDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSS 185 (241)
T ss_dssp ----------------CHHHHHHHHHTTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCB
T ss_pred ----------------CHHHHHHHHHcCCCccc-----ccccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCC
Confidence 36666666666665554 22 3457788888888888888888888877 7778888888
Q ss_pred hHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 274 IFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 274 ~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
|||+|+..|+.+++++|+++|++++ .+|..|+||||+|+..++.++++.|
T Consensus 186 ~L~~A~~~~~~~~v~~Ll~~ga~~~----~~~~~g~tpl~~A~~~~~~~i~~~l 235 (241)
T 1k1a_A 186 ALHSASGRGLLPLVRTLVRSGADSS----LKNCHNDTPLMVARSRRVIDILRGK 235 (241)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCTT----CCCTTSCCTTTTCSSHHHHHHHTC-
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCC----CcCCCCCCHHHHHHhcCcHHHHhhh
Confidence 8888888888888888888887765 5788888888888888777776655
No 23
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=4.6e-39 Score=310.01 Aligned_cols=253 Identities=14% Similarity=0.077 Sum_probs=189.5
Q ss_pred ccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCc--ccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhH
Q 040056 69 LILQDENGNTAFCFAAAAGAVDIANLMLKKNPSL--LGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVI 145 (536)
Q Consensus 69 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 145 (536)
++.+|.+|.||||+|++.|+.+++++|++.|++. .+.+|..|.||||+|+..|+.+++++|+++|+ ++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4678999999999999999999999999998872 37889999999999999999999999999999 88899999999
Q ss_pred HHHHHhcCchHHHHHHHHhChhhh------------hccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHH
Q 040056 146 FITSVDTGLYDLALKLLKSDRQLA------------LTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALE 213 (536)
Q Consensus 146 L~~a~~~~~~~~~~~ll~~~~~~~------------~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (536)
||+|+..|+.++++.|++...... ......+.++++.++..+. ...
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~ 139 (282)
T 1oy3_D 82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP----------------------ENE 139 (282)
T ss_dssp HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------------------------
T ss_pred HHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhcccccc----------------------chh
Confidence 999999999999999998743211 1122334555555544431 122
Q ss_pred HHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccC-CChhHHHHHHcCChHHHHHHHh
Q 040056 214 LVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDEN-GRSIFHVAILHRHMNIFNLIYE 292 (536)
Q Consensus 214 ~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~-g~t~Lh~A~~~~~~~iv~~Ll~ 292 (536)
....+...+.+++. .+..|.||||+|+..|+.+++++|++++++ ++.++.. |+||||+|+..|+.+++++|++
T Consensus 140 ~~~~~~~~~~~~~~-----~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~ 213 (282)
T 1oy3_D 140 EEPRDEDWRLQLEA-----ENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLK 213 (282)
T ss_dssp ----CCCGGGGTTC-----CCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhhhhhhcCCC-----cCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 22233333444444 556789999999999999999999999999 7777754 9999999999999999999999
Q ss_pred cCcchhhhhccccCCCCcHhHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCccccccCCCCCCchhhhHHHhH
Q 040056 293 QGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMKNYDGKTPRELFTVEHL 372 (536)
Q Consensus 293 ~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~~~~ 372 (536)
+|++++ .+|..|+||||+|+..++.+++++| +..|++++.+|.+|.||++++.....
T Consensus 214 ~gad~~----~~d~~g~tpL~~A~~~~~~~~v~~L-------------------l~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 214 AGADPT----ARMYGGRTPLGSALLRPNPILARLL-------------------RAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp TTCCTT----CCCTTSCCHHHHHHTSSCHHHHHHH-------------------HHTTCCCCCCC---------------
T ss_pred cCCCCc----ccccCCCCHHHHHHHcCCcHHHHHH-------------------HHcCCCcCcCCCcccccccccCCccc
Confidence 999976 6999999999999999999888887 77899999999999999999986543
No 24
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=5.5e-38 Score=294.51 Aligned_cols=222 Identities=15% Similarity=0.174 Sum_probs=185.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..|+||||.|+..|+.+++++|++++ .+++.. +..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 9 ~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 9 QNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTC-SEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCcc-CCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence 46899999999999999999999998 778776 88999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.++ .+..+
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~---------------------- 141 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD---------------------- 141 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC----------------------
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccC----------------------
Confidence 9999999999999999943358899999999999999999999999999876 44444
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
..|.||||+|+..+ ..+++++|++.|.+++. .+..|.|||
T Consensus 142 ------------~~g~t~L~~A~~~~-----------------------~~~~~~~Ll~~g~~~~~-----~~~~g~t~L 181 (237)
T 3b7b_A 142 ------------NEENICLHWAAFSG-----------------------CVDIAEILLAAKCDLHA-----VNIHGDSPL 181 (237)
T ss_dssp ------------TTSCCHHHHHHHHC-----------------------CHHHHHHHHTTTCCTTC-----CCTTCCCHH
T ss_pred ------------CCCCCHHHHHHHCC-----------------------CHHHHHHHHHcCCCCCC-----cCCCCCCHH
Confidence 44555555555444 34555555555555444 334567777
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHh
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYE 292 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~ 292 (536)
|+|++.|+.+++++|++++++ ++.+|.+|+||||+|+.+++.+.+..+++
T Consensus 182 ~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~~~~~~~~~l~~ 231 (237)
T 3b7b_A 182 HIAARENRYDCVVLFLSRDSD-VTLKNKEGETPLQCASLNSQVWSALQMSK 231 (237)
T ss_dssp HHHHHTTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHSCTTCHHHHHHHHHH
T ss_pred HHHHHhCCHhHHHHHHHcCCC-CCccCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999988 78899999999999999998876666654
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=3.1e-38 Score=296.92 Aligned_cols=191 Identities=19% Similarity=0.218 Sum_probs=155.5
Q ss_pred ccccccCCCcHHHHHHHcCCHHHHHHHHh----cCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchh
Q 040056 69 LILQDENGNTAFCFAAAAGAVDIANLMLK----KNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRK 143 (536)
Q Consensus 69 ~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~ 143 (536)
++.+|.+|+||||+|++.|+.+++++|++ .+.++ +.+|..|.||||+|+..|+.+++++|++.++ ++.
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------ 74 (241)
T 1k1a_A 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA------ 74 (241)
T ss_dssp -----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC------
T ss_pred ccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc------
Confidence 35689999999999999999999999997 67775 8889999999999999999999999998876 443
Q ss_pred hHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHh
Q 040056 144 VIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIV 223 (536)
Q Consensus 144 t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~ 223 (536)
.|..|.||||+|+..+ ..+++++|++.+.
T Consensus 75 ----------------------------~~~~g~t~l~~A~~~~-----------------------~~~~~~~Ll~~~~ 103 (241)
T 1k1a_A 75 ----------------------------LDRHGQTAAHLACEHR-----------------------SPTCLRALLDSAA 103 (241)
T ss_dssp ----------------------------CCTTSCCHHHHHHHTT-----------------------CHHHHHHHHHHSC
T ss_pred ----------------------------cCCCCCCHHHHHHHcC-----------------------CHHHHHHHHHcCC
Confidence 4445555555555555 3555555555544
Q ss_pred ----cCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccc-cCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 224 ----RQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELD-ENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 224 ----~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
+.+. .+..|.||||+|+..|+.+++++|++++++ ++.+| ..|+||||+|+..|+.+++++|+++|++++
T Consensus 104 ~~~~~~~~-----~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~ 177 (241)
T 1k1a_A 104 PGTLDLEA-----RNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN 177 (241)
T ss_dssp TTSCCTTC-----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred Cccccccc-----cCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence 3333 345679999999999999999999999999 77777 889999999999999999999999999876
Q ss_pred hhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 299 LLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 299 ~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
.+|..|+||||+|+..++.++++.|
T Consensus 178 ----~~~~~g~t~L~~A~~~~~~~~v~~L 202 (241)
T 1k1a_A 178 ----AQMYSGSSALHSASGRGLLPLVRTL 202 (241)
T ss_dssp ----CBCTTSCBHHHHHHHHTCHHHHHHH
T ss_pred ----CcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 6999999999999999998887766
No 26
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.7e-38 Score=307.57 Aligned_cols=262 Identities=15% Similarity=0.153 Sum_probs=221.6
Q ss_pred HHHHcCCHHHHHHHHhhcCccchh--------hhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 11 KASLKGEMKEIEGLLEKDYRSILC--------AAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 11 ~Aa~~g~~~~v~~ll~~~~~~~~~--------~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+++.|..+.++.++... . .+. ...+..|.||||.||..|+.++|++|++. +.+++.+|..|.||||+
T Consensus 4 ~~a~~~~~~~l~~~~~~~-~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 79 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSE-T-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLER--GADINYANVDGLTALHQ 79 (299)
T ss_dssp HHHHHHHHHHHHHHHHTT-T-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHHH--CCCTTCBCTTCCBHHHH
T ss_pred hHHHHHHHHHHHHHHccc-c-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 477888888888888776 2 111 12245678999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..++.++++.+
T Consensus 80 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~l 158 (299)
T 1s70_B 80 ACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158 (299)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999998 888899999999999999999999999
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
+...+.+.+..+..+.+++ .+.+..++..+...+. ..+..|.|||
T Consensus 159 l~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~l~~~~~~~~----~~~~~g~t~L 203 (299)
T 1s70_B 159 VNRQGVDIEAARKEEERIM-------------------------------LRDARQWLNSGHINDV----RHAKSGGTAL 203 (299)
T ss_dssp HHHHTCCHHHHHHHHHHHH-------------------------------HHHHHHHHHHTCCCCC----CCTTTCCCHH
T ss_pred HhhcCCCchhhhhhhhhHH-------------------------------HHHHHHHHhccCcchh----hhcCCCCCHH
Confidence 9886655544333333322 2233344444433222 1345679999
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhh
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAK 317 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~ 317 (536)
|+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|+++|++++ .+|..|+||||+|+.
T Consensus 204 ~~A~~~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~----~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 204 HVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME----AVNKVGQTAFDVADE 274 (299)
T ss_dssp HHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----CCCTTSCCTTTSCCS
T ss_pred HHHHHCCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCC----CcCCCCCCHHHHHHH
Confidence 999999999999999999999 89999999999999999999999999999999977 699999999999965
No 27
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=4.7e-37 Score=286.30 Aligned_cols=213 Identities=20% Similarity=0.224 Sum_probs=139.7
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccc-cccCCCcHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLIL-QDENGNTAFCFA 83 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~d~~g~tpLh~A 83 (536)
|+||||.|++.|+.++++.|++.+ +...+. .|..|.||||+|+..|+.+++++|++.+...+++. +|..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHC-GGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcC-cccccc-CCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 456666666666666666666665 322222 25566666666666666666666666521144444 555566666666
Q ss_pred HHcCCHHHHHHHHhcC--CCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHH
Q 040056 84 AAAGAVDIANLMLKKN--PSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
+..|+.+++++|+++| +++ +..|..|.||||+|+..|+.+++++|++++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g---------------------------- 130 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENG---------------------------- 130 (228)
T ss_dssp HHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTT----------------------------
T ss_pred HHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcC----------------------------
Confidence 6666666666666655 443 455555666666666666555555555543
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
.+++. .+..|.|||
T Consensus 131 -------------------------------------------------------------~~~~~-----~~~~g~t~L 144 (228)
T 2dzn_A 131 -------------------------------------------------------------ASVRI-----KDKFNQIPL 144 (228)
T ss_dssp -------------------------------------------------------------CCSCC-----CCTTSCCHH
T ss_pred -------------------------------------------------------------CCccc-----cCCCCCCHH
Confidence 22222 223346777
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHH-hcCcchhhhhccccCCCCcHhHHHhhC
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIY-EQGFNKQLLATYLDSCGNNILHLAAKY 318 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll-~~~~~~~~~~~~~d~~G~TpLh~A~~~ 318 (536)
|+|+..|+.+++++|++.++..++.+|..|+||||+|+..|+.+++++|+ +.|++++ .+|.+|+||||+|+..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~----~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD----LVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC----CBCTTSCBGGGGCSST
T ss_pred HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC----ccCCCCCcHHHHHHHH
Confidence 77777778889999999883338889999999999999999999999999 8898876 5899999999999764
No 28
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2e-37 Score=289.56 Aligned_cols=222 Identities=16% Similarity=0.127 Sum_probs=197.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
+..++||||.|+..|+.+.++.|++.. +..++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhc-hhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 456789999999999999999999885 5567888999999999999999999999999999996 88899999999999
Q ss_pred HHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccch
Q 040056 118 ALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGI 197 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 197 (536)
+..|+.+++++|+++++ +++.+|..|.||||+|+..+
T Consensus 81 ~~~~~~~~v~~Ll~~g~---------------------------------~~~~~~~~g~t~L~~A~~~~---------- 117 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGA---------------------------------HVNAVNQNGCTPLHYAASKN---------- 117 (231)
T ss_dssp HHHTCHHHHHHHHHTTC---------------------------------CTTCCCTTSCCHHHHHHHTT----------
T ss_pred HHcCHHHHHHHHHHcCC---------------------------------CCCCCCCCCCCHHHHHHHcC----------
Confidence 99999999999988764 34466778889999999888
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHH
Q 040056 198 MKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHV 277 (536)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 277 (536)
..+++++|+++|.+++. .+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+
T Consensus 118 -------------~~~~~~~Ll~~g~~~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~ 178 (231)
T 3aji_A 118 -------------RHEIAVMLLEGGANPDA-----KDHYDATAMHRAAAKGNLKMVHILLFYKAS-TNIQDTEGNTPLHL 178 (231)
T ss_dssp -------------CHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHH
T ss_pred -------------CHHHHHHHHHcCCCCCC-----cCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-ccccCCCCCCHHHH
Confidence 58899999998888776 456789999999999999999999999999 89999999999999
Q ss_pred HHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 278 AILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 278 A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
|+..++.+++++|+++|++++ .+|..|+||||+|+..++.+++++|
T Consensus 179 A~~~~~~~~v~~Ll~~ga~~~----~~~~~g~t~l~~A~~~~~~~i~~lL 224 (231)
T 3aji_A 179 ACDEERVEEAKFLVTQGASIY----IENKEEKTPLQVAKGGLGLILKRLA 224 (231)
T ss_dssp HHHTTCHHHHHHHHHTTCCSC----CCCTTSCCHHHHSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHCCCCCC----CCCCCCCCHHHHHHhhHHHHHHHHH
Confidence 999999999999999999876 5999999999999988776655544
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=1.3e-36 Score=283.44 Aligned_cols=183 Identities=17% Similarity=0.074 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..|+||||.|+..|+.++++.|++.+...+++...+..|.||||+|+..|+.+++++|++++.+.+++.+|..|.||||+
T Consensus 34 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~ 113 (228)
T 2dzn_A 34 QDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113 (228)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHH
Confidence 56899999999999999999999998224455534889999999999999999999999993238899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcC-c-ccccccchhhHHHHHHhcCchHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS-K-KELTTEDRKVIFITSVDTGLYDLALK 160 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~-~-~~~~~~~g~t~L~~a~~~~~~~~~~~ 160 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.+ + .+..|..|.||||+|+..|+.++++.
T Consensus 114 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~ 192 (228)
T 2dzn_A 114 AVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVL 192 (228)
T ss_dssp HHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 99999999999999999996 899999999999999999999999999988 3 44455555555555555555555555
Q ss_pred HHHhChhhhhccccCcCcHHHHHhcC
Q 040056 161 LLKSDRQLALTHHVQHGTALHMLARN 186 (536)
Q Consensus 161 ll~~~~~~~~~~d~~g~t~Lh~a~~~ 186 (536)
|++..+.+++.+|.+|.||+|+|+..
T Consensus 193 Ll~~~ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 193 LVEKYGAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHHCCCSCCBCTTSCBGGGGCSST
T ss_pred HHHhcCCCCCccCCCCCcHHHHHHHH
Confidence 55333555555555555555555443
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=9.6e-37 Score=286.26 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=186.8
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
|..|.||||.|++.|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVEA--GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred ccccchHHHHHHHcCChHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 66777888888888888888888887 6777777778888888888888888888888887776555666678888888
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccc
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLG 196 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 196 (536)
+..|+.+++++|++.++ .+..+..|.||||.|+..|+.++++.|++. +.+++..|..|.||||.|+..++
T Consensus 84 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~-~~~~~~~~~~g~t~l~~a~~~~~-------- 154 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGMTPLMWAAYRTH-------- 154 (240)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHCC--------
T ss_pred HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc-CCCccccCCCCCcHHHHHHHhCC--------
Confidence 88888888888887777 666777778888888888888888888876 66677888899999999986653
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhc-CCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhH
Q 040056 197 IMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIR-KPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIF 275 (536)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~L 275 (536)
..+++++|++.+.+++. .+. .|.||||+|+..|+.+++++|++++++ ++.+|..|+|||
T Consensus 155 --------------~~~~~~~L~~~~~~~~~-----~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l 214 (240)
T 3eu9_A 155 --------------SVDPTRLLLTFNVSVNL-----GDKYHKNTALHWAVLAGNTTVISLLLEAGAN-VDAQNIKGESAL 214 (240)
T ss_dssp --------------SSTTHHHHHHTTCCTTC-----CCTTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHH
T ss_pred --------------hHHHHHHHHhcCCCcch-----hhccCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHH
Confidence 36778888888888776 333 679999999999999999999999999 899999999999
Q ss_pred HHHHHcCChHHHHHHHhcCcchh
Q 040056 276 HVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 276 h~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
|+|++.|+.+++++|++.+++..
T Consensus 215 ~~A~~~~~~~~v~~L~~~~~~~~ 237 (240)
T 3eu9_A 215 DLAKQRKNVWMINHLQEARQAKG 237 (240)
T ss_dssp HHHHHTTCHHHHHHHHHHC----
T ss_pred HHHHHcCcHHHHHHHHHhhhccC
Confidence 99999999999999999987654
No 31
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=5.1e-37 Score=296.10 Aligned_cols=239 Identities=14% Similarity=0.085 Sum_probs=214.1
Q ss_pred HHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHH
Q 040056 12 ASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDI 91 (536)
Q Consensus 12 Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~i 91 (536)
++...+.+.+..++..+ +++.+ |.+|.||||+|+..|+.+++++|+++ +.+++.+| |.||||+|+..|+.++
T Consensus 6 ~i~~~~~~~v~~lL~~~---~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~--g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 6 RINTWKSKQLKSFLSSK---DTFKA-DVHGHSASYYAIADNNVRLVCTLLNA--GALKNLLE--NEFPLHQAATLEDTKI 77 (285)
T ss_dssp TGGGCCHHHHHHHHHST---TTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TGGGSCCT--TCCHHHHHTTSSSCHH
T ss_pred HHHhcCHHHHHHHHHhC---CCCcc-CCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCC--CCCHHHHHHHcCCHHH
Confidence 34567777888888766 46665 99999999999999999999999999 88888874 9999999999999999
Q ss_pred HHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccch-hhHHHHHHhcCchHHHHHHHHhChhhh
Q 040056 92 ANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDR-KVIFITSVDTGLYDLALKLLKSDRQLA 169 (536)
Q Consensus 92 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g-~t~L~~a~~~~~~~~~~~ll~~~~~~~ 169 (536)
+++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ ++..+..| .||||.|+..|+.+++++|++..+..
T Consensus 78 v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~- 155 (285)
T 3kea_A 78 VKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST- 155 (285)
T ss_dssp HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT-
T ss_pred HHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc-
Confidence 99999999996 8899999999999999999999999999999 88899999 89999999999999999999995443
Q ss_pred hcccc-CcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChH-HHHHHHc
Q 040056 170 LTHHV-QHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNL-LFDAAKV 247 (536)
Q Consensus 170 ~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~-Lh~Aa~~ 247 (536)
.+. .|.||||+|+..+ ..+++++|+++|++++. .+..|.|| ||+|+..
T Consensus 156 --~~~~~g~t~L~~A~~~g-----------------------~~~~v~~Ll~~gad~n~-----~~~~g~t~~L~~A~~~ 205 (285)
T 3kea_A 156 --FDLAILLSCIHITIKNG-----------------------HVDMMILLLDYMTSTNT-----NNSLLFIPDIKLAIDN 205 (285)
T ss_dssp --CCCSTHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHHTCT-----TCCCBCCTTHHHHHHH
T ss_pred --ccccCCccHHHHHHHcC-----------------------hHHHHHHHHHcCCCCCc-----ccCCCCChHHHHHHHc
Confidence 333 8999999999999 59999999999999887 55778897 9999999
Q ss_pred ChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 248 GNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 248 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
|+.+++++|+++|++ ++.+| +.|+..|+.+++++|+++|++++
T Consensus 206 ~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~~ 248 (285)
T 3kea_A 206 KDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEYK 248 (285)
T ss_dssp TCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCCC
Confidence 999999999999999 77777 35678999999999999998875
No 32
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=5.2e-38 Score=299.75 Aligned_cols=214 Identities=18% Similarity=0.179 Sum_probs=114.3
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccc-------hhhhcCCCCCcHHHHHHhcCCH-HHHHHHHhcCCCCccccccc
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSI-------LCAAITDGHETVLHVATGAKRT-SFVQQLLNFMDPEDLILQDE 74 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~-------~~~~~~~~g~t~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~~~d~ 74 (536)
|.+.++|+.||+.|+.++|+.|++.+ ... ++.. +..|.||||.|+..++. ++++.|++. |+++|.+|.
T Consensus 9 ~~~~~~L~~A~~~G~~~~v~~LL~~~-~~~~~~~~~~~~~~-~~~~~t~L~~a~~~~~~~~~v~~Ll~~--Gadvn~~d~ 84 (269)
T 4b93_B 9 YREVEKLLRAVADGDLEMVRYLLEWT-EEDLEDAEDTVSAA-DPEFCHPLCQCPKCAPAQKRLAKVPAS--GLGVNVTSQ 84 (269)
T ss_dssp CHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------C--CCCTTCCCT
T ss_pred ccchhHHHHHHHcCCHHHHHHHHHCC-Cccccccccccccc-CccCCCHHHHHHHhCCHHHHHHHHHHC--CCCCCCcCC
Confidence 34556666666666666666666665 221 1222 44556666666655543 355556555 566666666
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCc
Q 040056 75 NGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGL 154 (536)
Q Consensus 75 ~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~ 154 (536)
+|.||||+|+..|+.+++++|++.++++ ..++.+|.||+|.|+..++.+++++|++.+
T Consensus 85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g--------------------- 142 (269)
T 4b93_B 85 DGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSN--------------------- 142 (269)
T ss_dssp TSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTT---------------------
T ss_pred CCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCC---------------------
Confidence 6666666666666666666666666664 555666666666666666666666665554
Q ss_pred hHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhh
Q 040056 155 YDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAI 234 (536)
Q Consensus 155 ~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~ 234 (536)
.+++.+|..|.||||+|+..| ..+++++|+++|++++. .+
T Consensus 143 ------------~~~n~~d~~g~TpL~~A~~~g-----------------------~~~~v~~Ll~~gadvn~-----~~ 182 (269)
T 4b93_B 143 ------------AKPNKKDLSGNTPLIYACSGG-----------------------HHELVALLLQHGASINA-----SN 182 (269)
T ss_dssp ------------CCSCCCCTTCCCHHHHHHHTT-----------------------CGGGHHHHHHTTCCTTC-----BC
T ss_pred ------------CCCCCCCCCCCCHHHHHHHCC-----------------------CHHHHHHHHHCCCCCCc-----cc
Confidence 344455666666666666665 35555556665555554 33
Q ss_pred cCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCC
Q 040056 235 RKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRH 283 (536)
Q Consensus 235 ~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~ 283 (536)
..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+++++
T Consensus 183 ~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad-~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 183 NKGNTALHEAVIEKHVFVVELLLLHGAS-VQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp TTSCBHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCSGGGSCTTCH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHhCCc
Confidence 4556666666777777777777777777 67777777777777766554
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-37 Score=299.16 Aligned_cols=248 Identities=21% Similarity=0.217 Sum_probs=213.9
Q ss_pred CccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHH
Q 040056 2 QFSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFC 81 (536)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh 81 (536)
.++|.||||.||..|+.++++.|++.+ .+++.. |..|.||||+|+..|+.+++++|+++ |++++.+|..|.||||
T Consensus 37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~g~tpL~ 111 (299)
T 1s70_B 37 KFDDGAVFLAACSSGDTEEVLRLLERG--ADINYA-NVDGLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLH 111 (299)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCB-CTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred ccCCccHHHHHHHcCCHHHHHHHHHcC--CCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHH
Confidence 356889999999999999999999999 788876 89999999999999999999999999 8999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc--ccccccchhhHHHHHHhcCchHHHH
Q 040056 82 FAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK--KELTTEDRKVIFITSVDTGLYDLAL 159 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~~ 159 (536)
+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..++.+++++++.... .+..+..+.++++ ..+.
T Consensus 112 ~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~ 182 (299)
T 1s70_B 112 AAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML--------RDAR 182 (299)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH--------HHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH--------HHHH
Confidence 999999999999999999996 8899999999999999999999999887654 3333334444443 2344
Q ss_pred HHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCCh
Q 040056 160 KLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTN 239 (536)
Q Consensus 160 ~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t 239 (536)
.++..........+..|.||||+|+..| ..+++++|+++|++++. .+..|.|
T Consensus 183 ~~l~~~~~~~~~~~~~g~t~L~~A~~~g-----------------------~~~~v~~Ll~~g~d~~~-----~d~~g~t 234 (299)
T 1s70_B 183 QWLNSGHINDVRHAKSGGTALHVAAAKG-----------------------YTEVLKLLIQARYDVNI-----KDYDGWT 234 (299)
T ss_dssp HHHHHTCCCCCCCTTTCCCHHHHHHHHT-----------------------CHHHHHHHHTTTCCTTC-----CCTTCCC
T ss_pred HHHhccCcchhhhcCCCCCHHHHHHHCC-----------------------cHHHHHHHHHcCCCCCC-----cCCCCCc
Confidence 5566655555567788999999999999 58999999999998887 5577899
Q ss_pred HHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhc
Q 040056 240 LLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQ 293 (536)
Q Consensus 240 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 293 (536)
|||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++. ..+.++.+++.
T Consensus 235 pL~~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 235 PLHAAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999999 899999999999999764 34555555544
No 34
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.1e-36 Score=280.94 Aligned_cols=217 Identities=20% Similarity=0.207 Sum_probs=178.7
Q ss_pred CCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHH
Q 040056 16 GEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLM 95 (536)
Q Consensus 16 g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~L 95 (536)
|+.+++++|++++ .+++...|.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|
T Consensus 2 g~~~~i~~Ll~~g--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 2 DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SADANIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp ---CCEETTEETT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CcHHHHHHHHHcC--CCcccccCCCCCchHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 6778888888888 566655578899999999999999999999998 788889999999999999999999999999
Q ss_pred HhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccC
Q 040056 96 LKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQ 175 (536)
Q Consensus 96 l~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~ 175 (536)
++.++...+.++..|.||||+|+..|+.+++++|++.++ +++..|..
T Consensus 78 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~---------------------------------~~~~~~~~ 124 (223)
T 2f8y_A 78 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHA---------------------------------DVNAVDDL 124 (223)
T ss_dssp HHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTC---------------------------------CTTCBCTT
T ss_pred HHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCC---------------------------------CCcCcCCC
Confidence 998884458888899999999999999999999988764 33445666
Q ss_pred cCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHH
Q 040056 176 HGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAE 255 (536)
Q Consensus 176 g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ 255 (536)
|.||||+|+..+ +.+++++|+++|++++. .+..|.||||+|+..|+.+++++
T Consensus 125 g~t~L~~A~~~~-----------------------~~~~v~~Ll~~g~~~~~-----~~~~g~t~L~~A~~~~~~~~v~~ 176 (223)
T 2f8y_A 125 GKSALHWAAAVN-----------------------NVDAAVVLLKNGANKDM-----QNNREETPLFLAAREGSYETAKV 176 (223)
T ss_dssp SCBHHHHHHHTT-----------------------CHHHHHHHHHTTCCTTC-----CCTTCCCHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHcC-----------------------CHHHHHHHHHcCCCCCC-----cCCCCcCHHHHHHHcCCHHHHHH
Confidence 667777776666 46677777776666655 34566888888889999999999
Q ss_pred HHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 256 LIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 256 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
|++++++ ++.+|..|+||||+|+++++.+++++|+++|+...
T Consensus 177 Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 177 LLDHFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp HHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred HHHcCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 9999998 89999999999999999999999999999997654
No 35
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.8e-37 Score=293.08 Aligned_cols=178 Identities=13% Similarity=0.130 Sum_probs=147.2
Q ss_pred ccccHHHHHHHHcCCHH-HHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHH
Q 040056 3 FSIRLLLYKASLKGEMK-EIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFC 81 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~-~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh 81 (536)
..+.||||.|+..++.+ +++.|++.| .+++.+ |.+|.||||+|+..|+.++|++|++. +++++.++.+|.||+|
T Consensus 50 ~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~-d~~G~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~ 124 (269)
T 4b93_B 50 PEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVT-SQDGSSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLH 124 (269)
T ss_dssp -------------------------CC--CCTTCC-CTTSCCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHH
T ss_pred ccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccc
Confidence 35789999999988764 778888888 889887 99999999999999999999999999 8999999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHH
Q 040056 82 FAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALK 160 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ 160 (536)
.|+..++.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.|+ ++..+..|.||||+|+..|+.++++.
T Consensus 125 ~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~ 203 (269)
T 4b93_B 125 LACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVEL 203 (269)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHH
T ss_pred cccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHH
Confidence 999999999999999999996 8999999999999999999999999999998 88899999999999999999999999
Q ss_pred HHHhChhhhhccccCcCcHHHHHhcCC
Q 040056 161 LLKSDRQLALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 161 ll~~~~~~~~~~d~~g~t~Lh~a~~~~ 187 (536)
|++. +.+++.+|.+|+||||+|++++
T Consensus 204 Ll~~-Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 204 LLLH-GASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHT-TCCSCCCCTTSCCSGGGSCTTC
T ss_pred HHHC-CCCCCCcCCCCCCHHHHHHhCC
Confidence 9987 7888999999999999998877
No 36
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-37 Score=306.89 Aligned_cols=258 Identities=10% Similarity=0.063 Sum_probs=206.0
Q ss_pred cCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccc-----------------cccCCC
Q 040056 15 KGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLIL-----------------QDENGN 77 (536)
Q Consensus 15 ~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----------------~d~~g~ 77 (536)
....+++++|++++ .+++.. +..|.|++| |+.++|+.|+++ +.+.+. +.....
T Consensus 29 ~~~~dlv~~ll~~g--a~i~~~-~~~g~~~~~-----g~~~~v~~Ll~~--g~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 98 (327)
T 1sw6_A 29 TFTHDLTSDFLSSP--LKIMKA-LPSPVVNDN-----EQKMKLEAFLQR--LLFPEIQEMPTSLNNDSSNRNSEGGSSNQ 98 (327)
T ss_dssp ECCTTCCCSTTTSS--CCCEEC-BCCCCCCCH-----HHHHHHHHHHHH--HHC--------------------------
T ss_pred hhcCchHHHHhhCC--cccccC-CCCCCcccC-----chhHHHHHHHHh--ccCCccccchHhhhcccccccccccCCcc
Confidence 44557788999998 888887 899999988 999999999998 555433 111122
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccC-CCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCc-
Q 040056 78 TAFCFAAAAGAVDIANLMLKKNPSLLGI-RGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGL- 154 (536)
Q Consensus 78 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~- 154 (536)
+.+|+|+..+..+++++|++.|+++ +. +|.+|+||||+|+..|+.+++++|+++|+ ++.+|..|.||||+|+..|+
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~ 177 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 177 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHH
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhccc
Confidence 3458888888899999999999997 66 89999999999999999999999999999 88999999999999999998
Q ss_pred --hHHHHHHHHhChhhhhccccCcCcHHHHHhc----CCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCC--
Q 040056 155 --YDLALKLLKSDRQLALTHHVQHGTALHMLAR----NPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQE-- 226 (536)
Q Consensus 155 --~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-- 226 (536)
.++++.|++....+++.+|..|+||||+|+. .+ ..+++++|++.+....
T Consensus 178 ~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g-----------------------~~~~v~~Ll~~~~~~~~~ 234 (327)
T 1sw6_A 178 YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTG-----------------------CSAAAKYYLDILMGWIVK 234 (327)
T ss_dssp HHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTT-----------------------CHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccc-----------------------cHHHHHHHHHHHHHHHhc
Confidence 7888888888667889999999999999998 66 5888999988743110
Q ss_pred -------------cHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhc
Q 040056 227 -------------DVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQ 293 (536)
Q Consensus 227 -------------~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 293 (536)
..+....+..|.||||.|+. +++|+++ + ++.+|..|+||||+|+..|+.+++++|+++
T Consensus 235 ~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~ 305 (327)
T 1sw6_A 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVDALLDY 305 (327)
T ss_dssp GGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred ccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 11222356778999999996 8999998 3 788999999999999999999999999999
Q ss_pred CcchhhhhccccCCCCcHhHHHhhCC
Q 040056 294 GFNKQLLATYLDSCGNNILHLAAKYP 319 (536)
Q Consensus 294 ~~~~~~~~~~~d~~G~TpLh~A~~~~ 319 (536)
|++++ .+|.+|+||||+|++.|
T Consensus 306 Gad~~----~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 306 GADPF----IANKSGLRPVDFGAGLE 327 (327)
T ss_dssp TCCTT----CCCTTSCCGGGGTCC--
T ss_pred CCCCc----ccCCCCCCHHHHHHhcC
Confidence 99987 69999999999999865
No 37
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=9.5e-36 Score=287.20 Aligned_cols=230 Identities=13% Similarity=0.124 Sum_probs=202.6
Q ss_pred hcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHh
Q 040056 50 GAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFL 129 (536)
Q Consensus 50 ~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 129 (536)
+..+.+-+..++.. + +++.+|.+|.||||+|+..|+.+++++|++.|+++ +.. +|.||||+|+..|+.+++++|
T Consensus 8 ~~~~~~~v~~lL~~--~-~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~--~g~t~L~~A~~~g~~~~v~~L 81 (285)
T 3kea_A 8 NTWKSKQLKSFLSS--K-DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK-NLL--ENEFPLHQAATLEDTKIVKIL 81 (285)
T ss_dssp GGCCHHHHHHHHHS--T-TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGG-SCC--TTCCHHHHHTTSSSCHHHHHH
T ss_pred HhcCHHHHHHHHHh--C-CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC-CCC--CCCCHHHHHHHcCCHHHHHHH
Confidence 33444444444444 2 58899999999999999999999999999999996 555 499999999999999999999
Q ss_pred hhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCc-CcHHHHHhcCCCCCCccccchhhhhhhhhhh
Q 040056 130 FHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQH-GTALHMLARNPSPFADTVLGIMKCSRNIELM 207 (536)
Q Consensus 130 l~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g-~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~ 207 (536)
+++|+ ++..|..|.||||+|+..|+.++++.|++. +.+++..|..| .||||+|+..+
T Consensus 82 l~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-ga~~~~~~~~g~~t~L~~A~~~~-------------------- 140 (285)
T 3kea_A 82 LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTGWKTSFYHAVMLN-------------------- 140 (285)
T ss_dssp HHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCSSSGGGSHHHHHHHTT--------------------
T ss_pred HHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCccCCCCCCCHHHHHHHcC--------------------
Confidence 99999 888999999999999999999999999999 78889999999 89999999999
Q ss_pred hHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChh-HHHHHHcCChHH
Q 040056 208 NNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSI-FHVAILHRHMNI 286 (536)
Q Consensus 208 ~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~-Lh~A~~~~~~~i 286 (536)
..+++++|++++.+.... ..|.||||+|+..|+.+++++|++++++ ++.+|..|+|| ||+|+..|+.++
T Consensus 141 ---~~~~v~~Ll~~g~~~~~~------~~g~t~L~~A~~~g~~~~v~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~ 210 (285)
T 3kea_A 141 ---DVSIVSYFLSEIPSTFDL------AILLSCIHITIKNGHVDMMILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEM 210 (285)
T ss_dssp ---CHHHHHHHHTTSCTTCCC------STHHHHHHHHHHTTCHHHHHHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHH
T ss_pred ---CHHHHHHHHhCCCccccc------cCCccHHHHHHHcChHHHHHHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHH
Confidence 599999999998776431 2569999999999999999999999999 89999999998 999999999999
Q ss_pred HHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 287 FNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 287 v~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
+++|+++|++++ .+| +.|+..++.+++++|
T Consensus 211 v~~Ll~~gad~~----~~~-------~~a~~~~~~~iv~~L 240 (285)
T 3kea_A 211 LQALFKYDINIY----SAN-------LENVLLDDAEIAKMI 240 (285)
T ss_dssp HHHHTTSCBCST----TTT-------GGGGTTTCHHHHHHH
T ss_pred HHHHHHcCCCCC----CCC-------hhhhhcCCHHHHHHH
Confidence 999999999987 355 467778888777776
No 38
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=271.52 Aligned_cols=225 Identities=15% Similarity=0.111 Sum_probs=202.7
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-cCCCcHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQD-ENGNTAFC 81 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh 81 (536)
-.|.|+||.|++.|+.+++++|++.+ .+++.+ +..|.||||+|+..|+.+++++|++. +.+++..+ ..|.||||
T Consensus 7 ~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~~~~t~L~ 81 (240)
T 3eu9_A 7 DYSTWDIVKATQYGIYERCRELVEAG--YDVRQP-DKENVTLLHWAAINNRIDLVKYYISK--GAIVDQLGGDLNSTPLH 81 (240)
T ss_dssp CGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTTBCHHH
T ss_pred cccchHHHHHHHcCChHHHHHHHHcC--CCcCCC-CCCCCCHHHHHHHhCCHHHHHHHHHc--CCcchhhcCCcCCChhH
Confidence 35889999999999999999999998 778776 89999999999999999999999999 66666444 55999999
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCc-hHHHH
Q 040056 82 FAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGL-YDLAL 159 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~-~~~~~ 159 (536)
+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++++ .+..+..|.||||.|+..++ .++++
T Consensus 82 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 82 WATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHH
Confidence 999999999999999999996 8899999999999999999999999999998 88899999999999997776 67777
Q ss_pred HHHHhChhhhhcccc-CcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCC
Q 040056 160 KLLKSDRQLALTHHV-QHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPT 238 (536)
Q Consensus 160 ~ll~~~~~~~~~~d~-~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~ 238 (536)
.|++. +.+++..+. .|.||||+|+..+ ..+++++|+++|++++. .+..|.
T Consensus 161 ~L~~~-~~~~~~~~~~~g~t~L~~A~~~~-----------------------~~~~v~~Ll~~g~~~~~-----~~~~g~ 211 (240)
T 3eu9_A 161 LLLTF-NVSVNLGDKYHKNTALHWAVLAG-----------------------NTTVISLLLEAGANVDA-----QNIKGE 211 (240)
T ss_dssp HHHHT-TCCTTCCCTTTCCCHHHHHHHHT-----------------------CHHHHHHHHHHTCCTTC-----BCTTSC
T ss_pred HHHhc-CCCcchhhccCCCcHHHHHHHcC-----------------------CHHHHHHHHHcCCCCCC-----cCCCCC
Confidence 77776 677777776 8999999999999 68999999999999887 557789
Q ss_pred hHHHHHHHcChHHHHHHHHHhCCC
Q 040056 239 NLLFDAAKVGNIQFLAELIGSYPD 262 (536)
Q Consensus 239 t~Lh~Aa~~g~~~~v~~Ll~~~~~ 262 (536)
||||+|++.|+.+++++|++.+++
T Consensus 212 t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 212 SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 999999999999999999999876
No 39
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=9.4e-36 Score=279.18 Aligned_cols=223 Identities=15% Similarity=0.161 Sum_probs=190.0
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCC--CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHH
Q 040056 37 ITDGHETVLHVATGAKRTSFVQQLLNFMD--PEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPL 114 (536)
Q Consensus 37 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 114 (536)
.|.+|.||||+|+..|+.+++++|++... +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L 82 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPL 82 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHH
Confidence 48899999999999999999999998741 2378999999999999999999999999999999996 88999999999
Q ss_pred HHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCcc
Q 040056 115 YFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADT 193 (536)
Q Consensus 115 ~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~ 193 (536)
|+|+..|+.+++++|++.++ ... +...+..+..|.||||+|+..+
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~------ 128 (236)
T 1ikn_D 83 HLACEQGCLASVGVLTQSCTTPHL----------------------------HSILKATNYNGHTCLHLASIHG------ 128 (236)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSS----------------------------SCGGGCCCTTCCCHHHHHHHTT------
T ss_pred HHHHHcCCHHHHHHHHhcccchhH----------------------------HHHhhccCCCCCCHHHHHHHcC------
Confidence 99999999999999998875 111 2234567888999999999988
Q ss_pred ccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhc-CCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCC
Q 040056 194 VLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIR-KPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGR 272 (536)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~-~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 272 (536)
..+++++|+++|++++. .+. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+
T Consensus 129 -----------------~~~~v~~Ll~~g~~~~~-----~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~ 185 (236)
T 1ikn_D 129 -----------------YLGIVELLVSLGADVNA-----QEPCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGY 185 (236)
T ss_dssp -----------------CHHHHHHHHHHTCCTTC-----CCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCC
T ss_pred -----------------CHHHHHHHHHcCCCCCC-----CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCC
Confidence 58899999999988876 344 679999999999999999999999999 899999999
Q ss_pred hhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCC
Q 040056 273 SIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYP 319 (536)
Q Consensus 273 t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~ 319 (536)
||||+|+.+++.+++++|+++|++.. ...++.+|.||.+.+....
T Consensus 186 tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~~~~~~~~~~ 230 (236)
T 1ikn_D 186 SPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYDTESEFT 230 (236)
T ss_dssp CGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTTCCCCC----
T ss_pred CHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHHHHhhhcccc
Confidence 99999999999999999999999875 3468999999998876543
No 40
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=4.2e-35 Score=272.15 Aligned_cols=208 Identities=15% Similarity=0.099 Sum_probs=176.4
Q ss_pred CCHHHHHHHHhcCCCCccccc-ccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhh
Q 040056 52 KRTSFVQQLLNFMDPEDLILQ-DENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLF 130 (536)
Q Consensus 52 g~~~~v~~Ll~~~~~~~~~~~-d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 130 (536)
|+.+++++|+++ +.+++.. |..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+
T Consensus 2 g~~~~i~~Ll~~--g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 78 (223)
T 2f8y_A 2 DAPAVISDFIYQ--GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQILI 78 (223)
T ss_dssp ---CCEETTEET--TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CcHHHHHHHHHc--CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 567777888877 6666554 777888888888888888888888888875 777888888888888888888888887
Q ss_pred hcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHh
Q 040056 131 HRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQ 210 (536)
Q Consensus 131 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (536)
+.+ +.+.+..+..|.||||+|+..+
T Consensus 79 ~~~--------------------------------~~~~~~~~~~g~t~L~~A~~~~----------------------- 103 (223)
T 2f8y_A 79 RNR--------------------------------ATDLDARMHDGTTPLILAARLA----------------------- 103 (223)
T ss_dssp HBT--------------------------------TSCTTCCCTTCCCHHHHHHHHT-----------------------
T ss_pred HcC--------------------------------CCCcccCCCCCCcHHHHHHHhC-----------------------
Confidence 765 3455567888999999999888
Q ss_pred HHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHH
Q 040056 211 ALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLI 290 (536)
Q Consensus 211 ~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~L 290 (536)
..+++++|++++.+++. .+..|.||||+|+..|+.+++++|++++++ ++.+|..|+||||+|+..|+.+++++|
T Consensus 104 ~~~~~~~Ll~~g~~~~~-----~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~L 177 (223)
T 2f8y_A 104 VEGMLEDLINSHADVNA-----VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVL 177 (223)
T ss_dssp CHHHHHHHHHTTCCTTC-----BCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHH
T ss_pred cHHHHHHHHHcCCCCcC-----cCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHH
Confidence 58999999999988876 456789999999999999999999999999 899999999999999999999999999
Q ss_pred HhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 291 YEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 291 l~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
+++|++++ .+|..|+||||+|+..++.+++++|
T Consensus 178 l~~ga~~~----~~~~~g~t~l~~A~~~~~~~i~~~L 210 (223)
T 2f8y_A 178 LDHFANRD----ITDHMDRLPRDIAQERMHHDIVRLL 210 (223)
T ss_dssp HHTTCCTT----CCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHcCCCCc----cccccCCCHHHHHHHhcchHHHHHH
Confidence 99999876 5999999999999999998887766
No 41
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=1.3e-33 Score=263.74 Aligned_cols=209 Identities=15% Similarity=0.093 Sum_probs=139.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcc----cCCCCCCCcHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLL----GIRGSKNMPPLY 115 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 115 (536)
.|+||||+|++.|+.+++++|++.. +.+++.+|..|.||||+|+..|+.+++++|++.|+++. ..+|.+|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 3566777777777777776666654 56666666667777777777777777777766666532 344556667777
Q ss_pred HHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccc
Q 040056 116 FAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTV 194 (536)
Q Consensus 116 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~ 194 (536)
+|+..|+.+++++|+++++ .+..+..... ....+..|..|.||||+|+..+
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~---------------------~~~~~~~~~~g~t~L~~A~~~~------- 132 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSVF---------------------HYRPHNLIYYGEHPLSFAACVG------- 132 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGGG---------------------SCCTTCSCCCCSSHHHHHHHHT-------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcce---------------------eecccccccCCCCHHHHHHHcC-------
Confidence 7777777777777776665 3333221100 0112234556777777777666
Q ss_pred cchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHH----HHHHHhCCCcc-----c
Q 040056 195 LGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFL----AELIGSYPDLV-----H 265 (536)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v----~~Ll~~~~~~~-----~ 265 (536)
+.+++++|+++|++++. .+..|.||||+|+..|+.+++ ++|++++++.. +
T Consensus 133 ----------------~~~~v~~Ll~~ga~~~~-----~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~ 191 (232)
T 2rfa_A 133 ----------------SEEIVRLLIEHGADIRA-----QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLEL 191 (232)
T ss_dssp ----------------CHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGG
T ss_pred ----------------CHHHHHHHHHCCCCCCC-----CCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhc
Confidence 46677777777666665 345567777777777777766 88888887632 6
Q ss_pred ccccCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 266 ELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 266 ~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
.+|..|+||||+|++.|+.+++++|+++|....
T Consensus 192 ~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~~~ 224 (232)
T 2rfa_A 192 VPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIA 224 (232)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhcCccch
Confidence 788999999999999999999999999886654
No 42
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=5e-33 Score=253.76 Aligned_cols=200 Identities=18% Similarity=0.145 Sum_probs=133.4
Q ss_pred CccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHH
Q 040056 2 QFSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFC 81 (536)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh 81 (536)
+-.+.||||.|+..|+.+.++.+++++ +.+++.. |.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEV-DTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYL 77 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcC-CCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 344566666666666666666666665 4455554 56666666666666666666666666 5666666666666666
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHH
Q 040056 82 FAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
+|+..|+.+++++|++.+....+.+|..|.||||+|+..|+.+++++|++.+
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g---------------------------- 129 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDG---------------------------- 129 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHC----------------------------
T ss_pred HHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcC----------------------------
Confidence 6666666666666663333223556666666666666666666666665544
Q ss_pred HHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 162 LKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 162 l~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
+.+++.+|..|.||||+|+..++.
T Consensus 130 ----~~~~~~~~~~g~t~L~~A~~~~~~---------------------------------------------------- 153 (201)
T 3hra_A 130 ----REDIDFQNDFGYTALIEAVGLREG---------------------------------------------------- 153 (201)
T ss_dssp ----CCCTTCCCTTSCCHHHHHHHSSCC----------------------------------------------------
T ss_pred ----CCCcCCCCCCCCCHHHHHHHhccc----------------------------------------------------
Confidence 345566777777777777766510
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcC
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQG 294 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~ 294 (536)
..++.+++++|++++++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 154 ----~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 154 ----NQLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp ----SHHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred ----hhhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 01247899999999988 7889999999999999999999999999876
No 43
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=1.9e-35 Score=290.87 Aligned_cols=261 Identities=11% Similarity=0.006 Sum_probs=204.5
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccC-------------
Q 040056 39 DGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGI------------- 105 (536)
Q Consensus 39 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~------------- 105 (536)
..+.+|+| ..+.++|++|+++ |++++.+|..|.|+++ |+.++++.|+++|.+. +.
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~--ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~~ 88 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSS--PLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSSN 88 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTS--SCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC-----------------
T ss_pred cccccchh----hhcCchHHHHhhC--CcccccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhccccc
Confidence 34556666 4667889999999 8999999999999988 9999999999998663 22
Q ss_pred ----CCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccc-cccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcH
Q 040056 106 ----RGSKNMPPLYFAALFGQTDTASFLFHRSK-KEL-TTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTA 179 (536)
Q Consensus 106 ----~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~-~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~ 179 (536)
+.....+.+|.|+..+..+++++|++.+. ++. .|..|.||||+|+..|+.++++.|++. +.+++.+|.+|.||
T Consensus 89 ~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-Gad~n~~d~~g~Tp 167 (327)
T 1sw6_A 89 RNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESC 167 (327)
T ss_dssp ---------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTBCCTTCCCH
T ss_pred ccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCH
Confidence 11112234588888888899999999998 888 899999999999999999999999998 78899999999999
Q ss_pred HHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHH-hcCCcHHHHHhhcCCChHHHHHHH----cChHHHHH
Q 040056 180 LHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREI-VRQEDVDVAEAIRKPTNLLFDAAK----VGNIQFLA 254 (536)
Q Consensus 180 Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~~~~g~t~Lh~Aa~----~g~~~~v~ 254 (536)
||+|+..+ +....+.++.|++.+ .+++. .+..|.||||+|+. .|+.++++
T Consensus 168 Lh~A~~~g--------------------~~~~~~~~~~ll~~~~~~~~~-----~d~~g~tpLh~A~~~~~~~g~~~~v~ 222 (327)
T 1sw6_A 168 LVKAVKSV--------------------NNYDSGTFEALLDYLYPCLIL-----EDSMNRTILHHIIITSGMTGCSAAAK 222 (327)
T ss_dssp HHHHHHSS--------------------HHHHTTCHHHHHHHHGGGGGE-----ECTTCCCHHHHHHHHHTSTTCHHHHH
T ss_pred HHHHHHhc--------------------ccccHHHHHHHHHhhhccccC-----CCCCCCCHHHHHHHHccccccHHHHH
Confidence 99999998 111256777888877 44544 56788999999999 99999999
Q ss_pred HHHHh--------------------CCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHH
Q 040056 255 ELIGS--------------------YPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHL 314 (536)
Q Consensus 255 ~Ll~~--------------------~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~ 314 (536)
+|++. +.+ ++.+|..|+||||.|+. +++|++++ +|.+|..|+||||+
T Consensus 223 ~Ll~~~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~~------~n~~d~~G~TpLh~ 289 (327)
T 1sw6_A 223 YYLDILMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIANM------LNAQDSNGDTCLNI 289 (327)
T ss_dssp HHHHHHHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHHT------TTCCCTTSCCHHHH
T ss_pred HHHHHHHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHhC------CCCCCCCCCCHHHH
Confidence 99987 666 88999999999999986 89999883 44799999999999
Q ss_pred HhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCccccccCCCCCCchhhhHH
Q 040056 315 AAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKEMKNYDGKTPRELFTV 369 (536)
Q Consensus 315 A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~n~~g~tpl~~a~~ 369 (536)
|+..|+.+++++| +..|++++.+|++|+||+++|.+
T Consensus 290 A~~~g~~~~v~~L-------------------l~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 290 AARLGNISIVDAL-------------------LDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHHHCCHHHHHHH-------------------HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred HHHcCCHHHHHHH-------------------HHcCCCCcccCCCCCCHHHHHHh
Confidence 9999999888887 77899999999999999999864
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=8.8e-33 Score=258.17 Aligned_cols=195 Identities=17% Similarity=0.157 Sum_probs=176.0
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc-----cccccCCCc
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL-----ILQDENGNT 78 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~t 78 (536)
.|+||||.|++.|+.++++.|++.. +.+++.+ |..|.||||+|+..|+.+++++|++. +.++ +.+|..|.|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQR-GAMGETALHIAALYDNLEAAMVLMEA--APELVFEPMTSELYEGQT 77 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--CGGGGGCCCCSTTTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CchhccccccccCCCCcC
Confidence 5899999999999999999999984 4888877 99999999999999999999999999 6665 677889999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCCCcccCCCC-------------CCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhh
Q 040056 79 AFCFAAAAGAVDIANLMLKKNPSLLGIRGS-------------KNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKV 144 (536)
Q Consensus 79 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t 144 (536)
|||+|+..|+.+++++|+++|+++ +.++. +|.||||+|+..|+.+++++|+++|+ ++.+|..|.|
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t 156 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNT 156 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence 999999999999999999999996 55544 79999999999999999999999999 8889999999
Q ss_pred HHHHHHhcCchHHH----HHHHHhChhhh------hccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHH
Q 040056 145 IFITSVDTGLYDLA----LKLLKSDRQLA------LTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALEL 214 (536)
Q Consensus 145 ~L~~a~~~~~~~~~----~~ll~~~~~~~------~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (536)
|||+|+..|+.+++ +.|++.. .+. +.+|..|.||||+|++.+ +.++
T Consensus 157 ~L~~A~~~~~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~~~g~tpl~~A~~~g-----------------------~~~~ 212 (232)
T 2rfa_A 157 VLHILILQPNKTFACQMYNLLLSYD-GGDHLKSLELVPNNQGLTPFKLAGVEG-----------------------NIVM 212 (232)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHTT-CSCSSCCGGGCCCTTSCCHHHHHHHHT-----------------------CHHH
T ss_pred HHHHHHHcCChHHHHHHHHHHHhcC-CchhhhhhhccCCCCCCCHHHHHHHcC-----------------------CHHH
Confidence 99999999999988 8888874 333 578999999999999999 5999
Q ss_pred HHHHHHHHhcCCc
Q 040056 215 VKCLWREIVRQED 227 (536)
Q Consensus 215 ~~~L~~~~~~~~~ 227 (536)
+++|++++.....
T Consensus 213 v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 213 FQHLMQKRKHIAA 225 (232)
T ss_dssp HHHHHHHHHHC--
T ss_pred HHHHHhcCccchh
Confidence 9999999987655
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=100.00 E-value=1.8e-32 Score=250.01 Aligned_cols=157 Identities=15% Similarity=0.186 Sum_probs=146.6
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|++.. +.+++.+|..|.||||+
T Consensus 37 ~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~-~~~g~t~l~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~ 112 (201)
T 3hra_A 37 TEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQ-NSISDSPYLYAGAQGRTEILAYMLKHA-TPDLNKHNRYGGNALIP 112 (201)
T ss_dssp TTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHHS-CCCTTCCCTTSCCSHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHhcc-CcccccccCCCCcHHHH
Confidence 56899999999999999999999998 788876 899999999999999999999999765 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcC-CCcccCCCCCCCcHHHHHHHcCC-----HHHHHHhhhcCc-ccccccchhhHHHHHHhcCch
Q 040056 83 AAAAGAVDIANLMLKKN-PSLLGIRGSKNMPPLYFAALFGQ-----TDTASFLFHRSK-KELTTEDRKVIFITSVDTGLY 155 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~-~~~~~~~~~~g~tpL~~A~~~g~-----~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~ 155 (536)
|+..|+.+++++|++.| .++ +.+|..|.||||+|+..++ .+++++|+++|+ ++.+|..|.||||+|+..|+.
T Consensus 113 A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 191 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDGREDI-DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYT 191 (201)
T ss_dssp HHHTTCHHHHHHHHHHCCCCT-TCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHcCCHHHHHHHHHcCCCCc-CCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCH
Confidence 99999999999999999 664 8999999999999999998 999999999998 888899999999999999999
Q ss_pred HHHHHHHHh
Q 040056 156 DLALKLLKS 164 (536)
Q Consensus 156 ~~~~~ll~~ 164 (536)
++++.|++.
T Consensus 192 ~~~~~Ll~~ 200 (201)
T 3hra_A 192 EISKILAQY 200 (201)
T ss_dssp HHHHHHHTC
T ss_pred hHHHHHHhc
Confidence 999999875
No 46
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.2e-33 Score=264.78 Aligned_cols=219 Identities=14% Similarity=0.127 Sum_probs=175.2
Q ss_pred cccccCCCcHHHHHHHcCCHHHHHHHHhcCCC---cccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhH
Q 040056 70 ILQDENGNTAFCFAAAAGAVDIANLMLKKNPS---LLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVI 145 (536)
Q Consensus 70 ~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 145 (536)
+.+|.+|.||||+|+..|+.+++++|++.++. ..+.+|..|.||||+|+..|+.+++++|++.|+ ++..+..|.||
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTP 81 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCH
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence 35788999999999999999999999988763 247889999999999999999999999999987 66667777777
Q ss_pred HHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcC
Q 040056 146 FITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQ 225 (536)
Q Consensus 146 L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 225 (536)
||+|+..|+.++++.|++... +.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~---------------------------------------------------------~~ 104 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCT---------------------------------------------------------TP 104 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTT---------------------------------------------------------TT
T ss_pred HHHHHHcCCHHHHHHHHhccc---------------------------------------------------------ch
Confidence 777777777777777766521 11
Q ss_pred CcH-HHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCccccccc-CCChhHHHHHHcCChHHHHHHHhcCcchhhhhcc
Q 040056 226 EDV-DVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDE-NGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATY 303 (536)
Q Consensus 226 ~~~-~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~ 303 (536)
+.. .....+..|.||||+|+..|+.+++++|++++++ ++.+|. .|+||||+|+..|+.+++++|+++|++++ .
T Consensus 105 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~----~ 179 (236)
T 1ikn_D 105 HLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN----R 179 (236)
T ss_dssp SSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC----C
T ss_pred hHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC----c
Confidence 000 0111335579999999999999999999999999 888887 99999999999999999999999999976 6
Q ss_pred ccCCCCcHhHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCcccc--ccCCCCCCchhhhHH
Q 040056 304 LDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPSYKE--MKNYDGKTPRELFTV 369 (536)
Q Consensus 304 ~d~~G~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~n~~g~tpl~~a~~ 369 (536)
+|..|+||||+|+..++.+++++| +..+++.. .++.+|.||.+...+
T Consensus 180 ~~~~g~tpl~~A~~~~~~~~~~~L-------------------l~~ga~~~~~~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 180 VTYQGYSPYQLTWGRPSTRIQQQL-------------------GQLTLENLQMLPESEDEESYDTESE 228 (236)
T ss_dssp CCTTCCCGGGGCTTSSCHHHHHHH-------------------HTTSCGGGSSCCCCCTTTCCCCC--
T ss_pred ccCCCCCHHHHHHccCchHHHHHH-------------------HHcchhhhhcCCccchHHHHhhhcc
Confidence 999999999999999998888777 66777654 889999999988764
No 47
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=2.3e-32 Score=259.39 Aligned_cols=204 Identities=18% Similarity=0.179 Sum_probs=134.8
Q ss_pred ccHHHHHHHHcCCHH----HHHHHHhhcCccchhh---hcCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCcccc---
Q 040056 5 IRLLLYKASLKGEMK----EIEGLLEKDYRSILCA---AITDGHETVLHVATGA---KRTSFVQQLLNFMDPEDLIL--- 71 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~----~v~~ll~~~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~--- 71 (536)
|+||||.|++.|+.+ +++++++.+ .+++. ..|..|.||||+|+.. |+.+++++|++. +++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~--g~~~~~~~~ 77 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI--DKDSGNPKP 77 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH--HHHTTCSSC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhc--CCcccchhh
Confidence 678888888888876 444455566 66665 2377788888888877 888888888877 555442
Q ss_pred --------cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCC-------------CCcHHHHHHHcCCHHHHHHhh
Q 040056 72 --------QDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSK-------------NMPPLYFAALFGQTDTASFLF 130 (536)
Q Consensus 72 --------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~~v~~Ll 130 (536)
+|..|.||||+|+..|+.+++++|+++|+++ +.+|.. |.||||+|+..|+.+++++|+
T Consensus 78 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll 156 (256)
T 2etb_A 78 LVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156 (256)
T ss_dssp GGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2356777777777777777777777777775 555554 556666666666555555555
Q ss_pred hcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhc--CCCCCCccccchhhhhhhhhhhh
Q 040056 131 HRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLAR--NPSPFADTVLGIMKCSRNIELMN 208 (536)
Q Consensus 131 ~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~--~~~~~~~~~~~~~~~~~~~~~~~ 208 (536)
+.+. .+.+++.+|.+|+||||+|+. .+
T Consensus 157 ~~~~------------------------------~ga~~n~~d~~g~TpLh~A~~~~~~--------------------- 185 (256)
T 2etb_A 157 ENPH------------------------------QPASLEATDSLGNTVLHALVMIADN--------------------- 185 (256)
T ss_dssp HCSS------------------------------CCCCTTCCCTTSCCHHHHHHHHCCS---------------------
T ss_pred hccc------------------------------cCCCcCccCCCCCCHHHHHHHcccC---------------------
Confidence 5100 144555667777777777776 33
Q ss_pred HhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcc-------cccccCCChhHHHHHHc
Q 040056 209 NQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLV-------HELDENGRSIFHVAILH 281 (536)
Q Consensus 209 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~-------~~~d~~g~t~Lh~A~~~ 281 (536)
..+..+. ..+++++|+++|++ + +.+|..|+||||+|+..
T Consensus 186 --~~~~~~~-------------------------------~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~ 231 (256)
T 2etb_A 186 --SPENSAL-------------------------------VIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLKLAAKE 231 (256)
T ss_dssp --CHHHHHH-------------------------------HHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred --CchhhHH-------------------------------HHHHHHHHHHcCCC-cccccccccccCCCCCCHHHHHHHh
Confidence 1220000 01255555555555 3 77888999999999999
Q ss_pred CChHHHHHHHhcCcchh
Q 040056 282 RHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 282 ~~~~iv~~Ll~~~~~~~ 298 (536)
|+.+++++|+++|.+..
T Consensus 232 g~~~~v~~Ll~~g~~~~ 248 (256)
T 2etb_A 232 GKIEIFRHILQREFSGA 248 (256)
T ss_dssp TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhCCCCCC
Confidence 99999999999887654
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=9e-32 Score=255.32 Aligned_cols=164 Identities=19% Similarity=0.148 Sum_probs=144.7
Q ss_pred ccccHHHHHHHHc---CCHHHHHHHHhhcCccchhhh----------cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc
Q 040056 3 FSIRLLLYKASLK---GEMKEIEGLLEKDYRSILCAA----------ITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL 69 (536)
Q Consensus 3 ~~~~t~L~~Aa~~---g~~~~v~~ll~~~~~~~~~~~----------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 69 (536)
.+|+||||.|+.. |+.++++.|++.+ .+++.. .|..|.||||+|+..|+.+++++|+++ ++++
T Consensus 41 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g--~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~ 116 (256)
T 2etb_A 41 STGKTCLMKAVLNLQDGVNACIMPLLQID--KDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADV 116 (256)
T ss_dssp TTTBCHHHHHHHTCBTTBCTTHHHHHHHH--HHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCT
T ss_pred CCCCCHHHHHHHccccchHHHHHHHHhcC--CcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCC
Confidence 4699999999999 9999999999998 666532 146799999999999999999999999 8999
Q ss_pred cccccC-------------CCcHHHHHHHcCCHHHHHHHHh---cCCCcccCCCCCCCcHHHHHHH--cCCHH-------
Q 040056 70 ILQDEN-------------GNTAFCFAAAAGAVDIANLMLK---KNPSLLGIRGSKNMPPLYFAAL--FGQTD------- 124 (536)
Q Consensus 70 ~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~---~~~~~~~~~~~~g~tpL~~A~~--~g~~~------- 124 (536)
+.+|.. |.||||+|+..|+.+++++|++ .|+++ +.+|.+|+||||+|+. .++.+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 195 (256)
T 2etb_A 117 HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL-EATDSLGNTVLHALVMIADNSPENSALVIH 195 (256)
T ss_dssp TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence 999887 9999999999999999999999 99996 8999999999999999 77877
Q ss_pred HHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhh-------hccccCcCcHHHHHhcCCCCCCccccch
Q 040056 125 TASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLA-------LTHHVQHGTALHMLARNPSPFADTVLGI 197 (536)
Q Consensus 125 ~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 197 (536)
++++|+++| .++ +.+|..|.||||+|+..+
T Consensus 196 iv~~Ll~~g---------------------------------a~~~~~~~~~~~~d~~g~tpL~~A~~~g---------- 232 (256)
T 2etb_A 196 MYDGLLQMG---------------------------------ARLCPTVQLEEISNHQGLTPLKLAAKEG---------- 232 (256)
T ss_dssp HHHHHHHHH---------------------------------HHHSTTCCGGGCCCTTSCCHHHHHHHTT----------
T ss_pred HHHHHHHcC---------------------------------CCcccccccccccCCCCCCHHHHHHHhC----------
Confidence 666666654 334 678999999999999999
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 198 MKCSRNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
..+++++|+++|.....
T Consensus 233 -------------~~~~v~~Ll~~g~~~~~ 249 (256)
T 2etb_A 233 -------------KIEIFRHILQREFSGAA 249 (256)
T ss_dssp -------------CHHHHHHHHHHHHHHHH
T ss_pred -------------CHHHHHHHHhCCCCCCC
Confidence 59999999999876543
No 49
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=3.5e-31 Score=233.45 Aligned_cols=157 Identities=20% Similarity=0.272 Sum_probs=147.5
Q ss_pred HHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHc
Q 040056 7 LLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAA 86 (536)
Q Consensus 7 t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~ 86 (536)
++|+.||+.|+.++|+.|++.| .+++.+ |.+|.||||+|+..++.+++++|++. +.+++.+|.+|.||||+|+..
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~G--advn~~-d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~ 80 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENG--ADVNAS-DSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAEN 80 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHCC--CCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHc
Confidence 5799999999999999999999 899887 99999999999999999999999999 899999999999999999999
Q ss_pred CCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhC
Q 040056 87 GAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSD 165 (536)
Q Consensus 87 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~ 165 (536)
|+.+++++|+++|+++ +.+|.+|+||||+|+..|+.+++++|++.|+ ++.+|.+|+||||+|+..|+.++++.|+++
T Consensus 81 g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~- 158 (169)
T 4gpm_A 81 GHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQ- 158 (169)
T ss_dssp TCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHC-
Confidence 9999999999999996 8999999999999999999999999999999 888999999999999999999999999988
Q ss_pred hhhhh
Q 040056 166 RQLAL 170 (536)
Q Consensus 166 ~~~~~ 170 (536)
+++++
T Consensus 159 GA~ie 163 (169)
T 4gpm_A 159 GGWLE 163 (169)
T ss_dssp -----
T ss_pred CCCcC
Confidence 55543
No 50
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.6e-32 Score=258.41 Aligned_cols=225 Identities=12% Similarity=0.069 Sum_probs=123.9
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcC--CCCccc----ccccCCCcHHHHHHHc---CCHHHHHHHHhcCCCc------
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFM--DPEDLI----LQDENGNTAFCFAAAA---GAVDIANLMLKKNPSL------ 102 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~------ 102 (536)
|..|.||||+|++.|+.++|+.|++.. .+.+++ .+|..|.||||+|+.. |+.+++++|++.|++.
T Consensus 10 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~ 89 (273)
T 2pnn_A 10 RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQF 89 (273)
T ss_dssp -CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHH
T ss_pred CcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHH
Confidence 555555666666666555555555421 023332 2355555666666554 5555666665554331
Q ss_pred ----ccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-cccccc--------------chhhHHHHHHhcCchHHHHHHHH
Q 040056 103 ----LGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTE--------------DRKVIFITSVDTGLYDLALKLLK 163 (536)
Q Consensus 103 ----~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~--------------~g~t~L~~a~~~~~~~~~~~ll~ 163 (536)
....|..|.||||+|+..|+.+++++|+++++ ++..+. .|.||||+|+..|+.+++++|++
T Consensus 90 i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~ 169 (273)
T 2pnn_A 90 VNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ 169 (273)
T ss_dssp HTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence 01134456666666666666666666666555 444443 56677777777777777777776
Q ss_pred h--ChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHH
Q 040056 164 S--DRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLL 241 (536)
Q Consensus 164 ~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~L 241 (536)
. .+.+++.+|.+|+||||+|+..++... .......+++++|+++|++++..
T Consensus 170 ~~~~gad~~~~d~~g~tpLh~A~~~~~~~~--------------~~~~~~~~~v~~Ll~~ga~~n~~------------- 222 (273)
T 2pnn_A 170 NSWQPADISARDSVGNTVLHALVEVADNTV--------------DNTKFVTSMYNEILILGAKLHPT------------- 222 (273)
T ss_dssp CSSCCCCTTCCCTTSCCHHHHHHHHCCSCH--------------HHHHHHHHHHHHHHHHHHHHCTT-------------
T ss_pred cccCCCCceeeCCCCCcHHHHHHHccCcch--------------hHHHHHHHHHHHHHHhhhhcccc-------------
Confidence 3 367788889999999999998662000 00000145666666666555430
Q ss_pred HHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCc-chhhhhccccCCCCcHh
Q 040056 242 FDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGF-NKQLLATYLDSCGNNIL 312 (536)
Q Consensus 242 h~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~-~~~~~~~~~d~~G~TpL 312 (536)
...++.+|..|+||||+|+..|+.+++++|+++|+ ++. .....+.+|-
T Consensus 223 -------------------~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~----~~~~~~~~~~ 271 (273)
T 2pnn_A 223 -------------------LKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPE----CRHAAAHHHH 271 (273)
T ss_dssp -------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC-----------------
T ss_pred -------------------cccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCch----hhhhhhhhcc
Confidence 01124577788888888888888888888888877 444 3555555553
No 51
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=5.2e-31 Score=250.63 Aligned_cols=200 Identities=18% Similarity=0.164 Sum_probs=173.4
Q ss_pred CCccccHHHHHHHHcCCHHHHHHHHh----hcCccchhhh---cCCCCCcHHHHHH---hcCCHHHHHHHHhcCC-----
Q 040056 1 MQFSIRLLLYKASLKGEMKEIEGLLE----KDYRSILCAA---ITDGHETVLHVAT---GAKRTSFVQQLLNFMD----- 65 (536)
Q Consensus 1 ~~~~~~t~L~~Aa~~g~~~~v~~ll~----~~~~~~~~~~---~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~----- 65 (536)
|...++|+||.|++.|+.+.++.+++ .+ .+++.. .|..|.||||+|+ +.|+.+++++|++.+.
T Consensus 1 ~~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~ 78 (260)
T 3jxi_A 1 MKVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNM 78 (260)
T ss_dssp CCCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCH
T ss_pred CccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccch
Confidence 56789999999999999997666666 66 566544 1377999999999 7899999999999820
Q ss_pred ----CCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCC--------------CCCCcHHHHHHHcCCHHHHH
Q 040056 66 ----PEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRG--------------SKNMPPLYFAALFGQTDTAS 127 (536)
Q Consensus 66 ----~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~~v~ 127 (536)
..+++.+|..|.||||+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.++++
T Consensus 79 ~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~ 157 (260)
T 3jxi_A 79 REFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVH 157 (260)
T ss_dssp HHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHH
T ss_pred HhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHH
Confidence 1335556679999999999999999999999999996 7777 68999999999999999999
Q ss_pred Hhhh---cCc-ccccccchhhHHHHHHhcCc---------hHHHHHHHHhChhhh-------hccccCcCcHHHHHhcCC
Q 040056 128 FLFH---RSK-KELTTEDRKVIFITSVDTGL---------YDLALKLLKSDRQLA-------LTHHVQHGTALHMLARNP 187 (536)
Q Consensus 128 ~Ll~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~ll~~~~~~~-------~~~d~~g~t~Lh~a~~~~ 187 (536)
+|++ .++ ++.+|..|+||||+|+..++ .++++.|++. +.++ +.+|..|.||||+|++.|
T Consensus 158 ~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 158 YLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIK-CAKLFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp HHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred HHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHh-CcccccccchhhcccCCCCCHHHHHHHcC
Confidence 9999 777 88899999999999998887 6899999998 6666 679999999999999999
Q ss_pred CCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 188 SPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
..+++++|+++|.....
T Consensus 237 -----------------------~~~~v~~Ll~~g~~~~~ 253 (260)
T 3jxi_A 237 -----------------------KIGIFQHIIRREIADAA 253 (260)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHC
T ss_pred -----------------------CHHHHHHHHHhCCCccc
Confidence 59999999999876543
No 52
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=3.8e-31 Score=253.52 Aligned_cols=195 Identities=15% Similarity=0.133 Sum_probs=170.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcC--ccchh---hhcCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCc------
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDY--RSILC---AAITDGHETVLHVATGA---KRTSFVQQLLNFMDPED------ 68 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~--~~~~~---~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~------ 68 (536)
..|+||||.|++.|+.++|+.|++.+. ..+++ ...|..|.||||+|+.. |+.++|++|++. +++
T Consensus 11 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~--ga~~~~~~~ 88 (273)
T 2pnn_A 11 LYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV--ARKTDSLKQ 88 (273)
T ss_dssp CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH--HHHTTCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh--hccccchhH
Confidence 568999999999999999999998530 13333 13478999999999987 999999999998 443
Q ss_pred -cc----ccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCC--------------CCCcHHHHHHHcCCHHHHHHh
Q 040056 69 -LI----LQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGS--------------KNMPPLYFAALFGQTDTASFL 129 (536)
Q Consensus 69 -~~----~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~~v~~L 129 (536)
++ .+|..|.||||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|
T Consensus 89 ~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 167 (273)
T 2pnn_A 89 FVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167 (273)
T ss_dssp HHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHH
T ss_pred HhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 22 26778999999999999999999999999996 67765 799999999999999999999
Q ss_pred hh---cCc-ccccccchhhHHHHHHhcCc---------hHHHHHHHHhChhhhh-------ccccCcCcHHHHHhcCCCC
Q 040056 130 FH---RSK-KELTTEDRKVIFITSVDTGL---------YDLALKLLKSDRQLAL-------THHVQHGTALHMLARNPSP 189 (536)
Q Consensus 130 l~---~~~-~~~~~~~g~t~L~~a~~~~~---------~~~~~~ll~~~~~~~~-------~~d~~g~t~Lh~a~~~~~~ 189 (536)
++ .++ ++.+|..|+||||+|+..|+ .++++.|++. +.+++ .+|..|.||||+|+..+
T Consensus 168 l~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~-ga~~n~~~~~~~~~d~~g~TpL~~A~~~g-- 244 (273)
T 2pnn_A 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSG-- 244 (273)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HHHHCTTCCGGGCCCTTSCCHHHHHHHTT--
T ss_pred HhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh-hhhcccccccccccCCCCCCHHHHHHHhC--
Confidence 99 787 88899999999999999988 7899999998 66664 58999999999999999
Q ss_pred CCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhc
Q 040056 190 FADTVLGIMKCSRNIELMNNQALELVKCLWREIVR 224 (536)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 224 (536)
..+++++|+++|+.
T Consensus 245 ---------------------~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 245 ---------------------KIGVLAYILQREIH 258 (273)
T ss_dssp ---------------------CHHHHHHHHHHHTC
T ss_pred ---------------------hHHHHHHHHHCCCC
Confidence 58999999999983
No 53
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.9e-30 Score=228.77 Aligned_cols=158 Identities=20% Similarity=0.233 Sum_probs=146.8
Q ss_pred cHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCC
Q 040056 43 TVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQ 122 (536)
Q Consensus 43 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 122 (536)
++|+.||+.|+.++|+.|++. |+++|.+|.+|.||||+|+..++.+++++|++.|+++ +.+|.+|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~--Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 479999999999999999999 8999999999999999999999999999999999996 8999999999999999999
Q ss_pred HHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhh
Q 040056 123 TDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCS 201 (536)
Q Consensus 123 ~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~ 201 (536)
.+++++|++.|+ ++.+|.+|+||||+|+..|+.++++.|++. +.+++.+|.+|+||||+|++.+
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~-gad~~~~d~~G~TpL~~A~~~g-------------- 147 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGRTPLDLAREHG-------------- 147 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT--------------
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcC--------------
Confidence 999999999999 889999999999999999999999999998 7888999999999999999999
Q ss_pred hhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 202 RNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 202 ~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
+.+++++|+++|++++.
T Consensus 148 ---------~~~iv~~Ll~~GA~ie~ 164 (169)
T 4gpm_A 148 ---------NEEVVKLLEKQGGWLEH 164 (169)
T ss_dssp ---------CHHHHHHHHTC------
T ss_pred ---------CHHHHHHHHHCCCCcCC
Confidence 58999999999998875
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.97 E-value=7e-31 Score=249.76 Aligned_cols=213 Identities=14% Similarity=0.068 Sum_probs=167.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHh----cCCCCcccccc----cCCCcHHHHHH---HcCCHHHHHHHHhcCCCc----
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLN----FMDPEDLILQD----ENGNTAFCFAA---AAGAVDIANLMLKKNPSL---- 102 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~d----~~g~tpLh~A~---~~g~~~iv~~Ll~~~~~~---- 102 (536)
+..|.|+||.|++.|+.+.++.|++ . +.+++..+ ..|.||||+|+ +.|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~--~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTH--KKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHH--TCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999996555555 7 77777666 67999999999 779999999999987531
Q ss_pred ------ccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccc--------------cchhhHHHHHHhcCchHHHHHH
Q 040056 103 ------LGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTT--------------EDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 103 ------~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~--------------~~g~t~L~~a~~~~~~~~~~~l 161 (536)
....|..|.||||+|+..|+.+++++|+++|+ ++..+ ..|.||||+|+..|+.++++.|
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 24456689999999999999999999999998 77777 5799999999999999999999
Q ss_pred HHh--ChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCCh
Q 040056 162 LKS--DRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTN 239 (536)
Q Consensus 162 l~~--~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t 239 (536)
++. .+.+++.+|..|+||||+|+..++... .......+++++|+++|++++..
T Consensus 160 l~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~--------------~~~~~~~~~v~~Ll~~ga~~~~~----------- 214 (260)
T 3jxi_A 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTR--------------ENTKFVTKMYDLLLIKCAKLFPD----------- 214 (260)
T ss_dssp HHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSH--------------HHHHHHHHHHHHHHHHHHHHCTT-----------
T ss_pred HhccccCCCCcccCCCCCcHHHHHHHhccCch--------------hHHHHHHHHHHHHHHhCcccccc-----------
Confidence 994 488899999999999999997652000 00000135555555555544320
Q ss_pred HHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchh
Q 040056 240 LLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQ 298 (536)
Q Consensus 240 ~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~ 298 (536)
....+.+|..|+||||+|+..|+.+++++|+++|.+..
T Consensus 215 ---------------------~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 215 ---------------------TNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp ---------------------CCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------------------cchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhCCCcc
Confidence 11136788888999999999999999999988887654
No 55
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.97 E-value=8.3e-32 Score=267.52 Aligned_cols=261 Identities=14% Similarity=0.056 Sum_probs=176.7
Q ss_pred cHHHHHHHH-cCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC---cccccccCCCcHHH
Q 040056 6 RLLLYKASL-KGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPE---DLILQDENGNTAFC 81 (536)
Q Consensus 6 ~t~L~~Aa~-~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~---~~~~~d~~g~tpLh 81 (536)
.++++.|.. .++.+.++.+++++ .+++||||+|++.|+.++|++|+++ +. ..+..|..|.||||
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g----------~~~~T~Lh~Aa~~G~~e~v~~Ll~~--ga~~~~~~~~~~~~~tpL~ 133 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKG----------IKSEVICFVAAITGCSSALDTLCLL--LTSDEIVKVIQAENYQAFR 133 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHT----------CCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcC----------CCcCCHHHHHHHcCCHHHHHHHHHc--CCcHHHHHHhccCCCCHHH
Confidence 345666655 46666676666665 2345999999999999999999988 43 12345566788999
Q ss_pred HHHHcCCHHHHHHHHhcCCCc--ccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccc--cccchhhHHHHHH-hcCch
Q 040056 82 FAAAAGAVDIANLMLKKNPSL--LGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KEL--TTEDRKVIFITSV-DTGLY 155 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~--~~~~g~t~L~~a~-~~~~~ 155 (536)
+|+..|+.++|++|+++|++. .+..+.+ .||||+|+..|+.+++++|+++|+ .+. .|..|.||||.|+ ..|+.
T Consensus 134 ~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~ 212 (376)
T 2aja_A 134 LAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHH 212 (376)
T ss_dssp HHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCH
T ss_pred HHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCH
Confidence 999999999999999999752 1222333 899999999999999999999988 555 7888999999999 99999
Q ss_pred HHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhc
Q 040056 156 DLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIR 235 (536)
Q Consensus 156 ~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~ 235 (536)
+++++|++. +. .|.||||.|+.+| ..+++++|+++|.+.+..
T Consensus 213 eiv~~Ll~~-ga-------~~~taL~~Aa~~g-----------------------~~evv~lL~~~ga~~~~~------- 254 (376)
T 2aja_A 213 NVINFLLDC-PV-------MLAYAEIHEFEYG-----------------------EKYVNPFIARHVNRLKEM------- 254 (376)
T ss_dssp HHHHHHTTS-HH-------HHHHHHHCTTTTT-----------------------TTTHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHhC-CC-------ccchHHHHHHHCC-----------------------CHHHHHHHHhcCcccccc-------
Confidence 999999985 43 2789999999998 578899999888776442
Q ss_pred CCChHHHHHHHcCh---------------------------HHHHHHHHHhCCCc----ccccccCCChhHHHHHHcCCh
Q 040056 236 KPTNLLFDAAKVGN---------------------------IQFLAELIGSYPDL----VHELDENGRSIFHVAILHRHM 284 (536)
Q Consensus 236 ~g~t~Lh~Aa~~g~---------------------------~~~v~~Ll~~~~~~----~~~~d~~g~t~Lh~A~~~~~~ 284 (536)
.++++.|+.+|+ .+.+++|++.+..- ....+..+.||||+|+..|+.
T Consensus 255 --~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~ 332 (376)
T 2aja_A 255 --HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQ 332 (376)
T ss_dssp --HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCT
T ss_pred --cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcH
Confidence 123334444443 44555555422100 012334678999999999999
Q ss_pred HHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCccc
Q 040056 285 NIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRT 326 (536)
Q Consensus 285 ~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~ 326 (536)
+++++|++.|. .+|..|+|++.+|-+.|+.++.+.
T Consensus 333 e~v~lLl~~~~-------v~~~~~~~~~~~~~~~~~~~~~~~ 367 (376)
T 2aja_A 333 GACALLLSIPS-------VLALTKANNYYINETGGRLDLRAV 367 (376)
T ss_dssp THHHHHTTSHH-------HHHSCC------------------
T ss_pred HHHHHHHcChH-------HHHHHHHhccccccccccccHHHH
Confidence 99999998762 378899999999999999876554
No 56
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=1.6e-29 Score=224.49 Aligned_cols=169 Identities=16% Similarity=0.191 Sum_probs=151.6
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAA 84 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~ 84 (536)
+.||||.|+..|+.+.++.+++.+ +..++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 77 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKP-DERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLAS 77 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHH
Confidence 568999999999999999999999 5557766 89999999999999999999999999 8999999999999999999
Q ss_pred HcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHH
Q 040056 85 AAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLK 163 (536)
Q Consensus 85 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~ 163 (536)
..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|++.++ .+..+..|.||||+|+..|+.++++.|++
T Consensus 78 ~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~ 156 (172)
T 3v30_A 78 TGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156 (172)
T ss_dssp HTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHH
Confidence 999999999999999996 8999999999999999999999999999998 88899999999999999999999999999
Q ss_pred hChhhhhccccCcCcH
Q 040056 164 SDRQLALTHHVQHGTA 179 (536)
Q Consensus 164 ~~~~~~~~~d~~g~t~ 179 (536)
+ +......+..|.||
T Consensus 157 ~-~~~~~~~~~~~~~p 171 (172)
T 3v30_A 157 H-ILKLFQSNLVPADP 171 (172)
T ss_dssp H-HHHHSCC-------
T ss_pred H-HHHHhcccCCCCCC
Confidence 9 66666777777776
No 57
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.96 E-value=7.3e-29 Score=219.04 Aligned_cols=158 Identities=16% Similarity=0.177 Sum_probs=150.4
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
+|.||||.|+..|+.+++++|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 76 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHT-DEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLA 76 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCC-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHH
Confidence 5889999999999999999999998 678776 89999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++++ ++..+..|.||+|+|+..|+.++++.|+
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 77 CSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp HHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999996 8999999999999999999999999999998 8889999999999999999999999999
Q ss_pred HhChh
Q 040056 163 KSDRQ 167 (536)
Q Consensus 163 ~~~~~ 167 (536)
++...
T Consensus 156 ~~~~~ 160 (167)
T 3v31_A 156 SHLLK 160 (167)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98444
No 58
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=5e-31 Score=245.22 Aligned_cols=202 Identities=15% Similarity=0.038 Sum_probs=151.9
Q ss_pred HHHHHhhcCccchh--hhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc
Q 040056 21 IEGLLEKDYRSILC--AAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKK 98 (536)
Q Consensus 21 v~~ll~~~~~~~~~--~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 98 (536)
++.|++++ .+++ ...+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.
T Consensus 1 v~~ll~~~--~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ 76 (229)
T 2vge_A 1 MRSVLRKA--GSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITA 76 (229)
T ss_dssp -----------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CeehhccC--CCCccccccccchhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 35677776 3332 22356778899999999999999999998 789999999999999999999999999999999
Q ss_pred CCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccc-cCcC
Q 040056 99 NPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHH-VQHG 177 (536)
Q Consensus 99 ~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d-~~g~ 177 (536)
|+++ +.+|..|.||||+|+..|+.+++++|++.++ +++..+ .+|.
T Consensus 77 ga~~-n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga---------------------------------~~~~~~~~~g~ 122 (229)
T 2vge_A 77 GANV-NSPDSHGWTPLHCAASCNDTVICMALVQHGA---------------------------------AIFATTLSDGA 122 (229)
T ss_dssp TCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTC---------------------------------CTTCCCSSTTC
T ss_pred CCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCC---------------------------------CcccccCCCCC
Confidence 9996 8889999999999999999999999988764 233343 5677
Q ss_pred cHHHHH--hcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHH
Q 040056 178 TALHML--ARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAE 255 (536)
Q Consensus 178 t~Lh~a--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~ 255 (536)
||||+| +..+ +.+++++
T Consensus 123 tpL~~A~a~~~~-------------------------------------------------------------~~~~v~~ 141 (229)
T 2vge_A 123 TAFEKCDPYREG-------------------------------------------------------------YADCATY 141 (229)
T ss_dssp CTGGGCCTTSTT-------------------------------------------------------------HHHHHHH
T ss_pred CHHHHHHHHhcC-------------------------------------------------------------hHHHHHH
Confidence 777777 5554 4555555
Q ss_pred HHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhhccccCCCCcHhHHHhhCCCCCCcccc
Q 040056 256 LIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLATYLDSCGNNILHLAAKYPTLSPYRTV 327 (536)
Q Consensus 256 Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~~~~d~~G~TpLh~A~~~~~~~~~~~l 327 (536)
|++++++ ++.+|..|.||+|.++..+.. ++|++.|++++ ++.+|..|+||||+|+..|+.++++..
T Consensus 142 Ll~~ga~-~~~~~~~~~~~l~~~~~~~~~---~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 142 LADVEQS-MGLMNSGAVYALWDYSAEFGD---ELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp HHHHHHH-TTTSGGGEEEESSCBCCSSTT---BCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred HHHcCCC-cccccCCchHHHHHHhhcccc---ccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehh
Confidence 5555555 566677788888865544433 57788888865 567999999999999999998887654
No 59
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.6e-29 Score=242.24 Aligned_cols=191 Identities=15% Similarity=0.151 Sum_probs=175.4
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCC-cccccccCCCcHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPE-DLILQDENGNTAFCFA 83 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~tpLh~A 83 (536)
..+++|.|+..|+.+.++.+++......++.+ |.+|.||||+|+..|+.++|++|++. +. +++.+|..|.||||+|
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~-d~~g~T~Lh~A~~~g~~~~v~~Ll~~--g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIA-DSNGNTALHYSVSHANFPVVQQLLDS--GVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--SCCCTTCCCTTSCCHHHHG
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCC-CCCCCCHHHHHHHCCCHHHHHHHHHC--CCCcCCCCCCCCCCHHHHH
Confidence 56889999999999999999988711236665 99999999999999999999999999 65 8999999999999999
Q ss_pred H-----HcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHH
Q 040056 84 A-----AAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDL 157 (536)
Q Consensus 84 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~ 157 (536)
+ ..++.+++++|++.|.+. ...|..|.||||+|+..|+.+++++|++.|+ ++.+|..|.||||+|+..|+.++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~i 231 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEI 231 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHH
Confidence 9 678999999999999885 8889999999999999999999999999999 88999999999999999999999
Q ss_pred HHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040056 158 ALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREI 222 (536)
Q Consensus 158 ~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 222 (536)
++.|++..+.+++.+|.+|.||||+|+..+ ..+++++|+++.
T Consensus 232 v~~Ll~~~gad~~~~d~~g~TpL~~A~~~g-----------------------~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 232 AGLLLAVPSCDISLTDRDGSTALMVALDAG-----------------------QSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTSTTCCTTCCCTTSCCHHHHHHHHT-----------------------CHHHHHHHHHHC
T ss_pred HHHHHhcCCCCCcCcCCCCCCHHHHHHHcC-----------------------CHHHHHHHHhcc
Confidence 999999668999999999999999999999 588999988764
No 60
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.96 E-value=1.9e-29 Score=241.87 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=136.3
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHH--
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAA-- 118 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~-- 118 (536)
+.+++|.|+..|+.+.++.+++...+..+|.+|.+|.||||+|+..|+.+++++|++.|+..++..|..|.||||+|+
T Consensus 76 ~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~ 155 (276)
T 4hbd_A 76 CRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALA 155 (276)
T ss_dssp HSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGC
T ss_pred hccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHH
Confidence 456777777777777777777662122267777777777777777777777777777777223777777777777777
Q ss_pred ---HcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCcccc
Q 040056 119 ---LFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVL 195 (536)
Q Consensus 119 ---~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 195 (536)
..++.+++++|++.+ ...+..|..|.||||+|+..|
T Consensus 156 ~~~~~~~~~~v~~Ll~~g---------------------------------~~~~~~~~~g~tpLh~A~~~g-------- 194 (276)
T 4hbd_A 156 TLKTQDDIETVLQLFRLG---------------------------------NINAKASQAGQTALMLAVSHG-------- 194 (276)
T ss_dssp CCCSHHHHHHHHHHHHHS---------------------------------CTTCCCTTTCCCHHHHHHHTT--------
T ss_pred HhhhhhhHHHHHHHHHcC---------------------------------CCccccCCCCCCHHHHHHHcC--------
Confidence 345555555555544 333345666777777777766
Q ss_pred chhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHH-hCCCcccccccCCChh
Q 040056 196 GIMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIG-SYPDLVHELDENGRSI 274 (536)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~-~~~~~~~~~d~~g~t~ 274 (536)
..+++++|++.|++++. ++..|.||||+|+..|+.+++++|++ .+++ ++.+|.+|+||
T Consensus 195 ---------------~~~~v~~Ll~~gad~n~-----~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~Tp 253 (276)
T 4hbd_A 195 ---------------RVDVVKALLACEADVNV-----QDDDGSTALMCACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTA 253 (276)
T ss_dssp ---------------CHHHHHHHHHTTCCTTC-----CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCH
T ss_pred ---------------CHHHHHHHHhCCCCCCC-----CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCH
Confidence 46677777777766665 44566788888888888888888888 6777 78888888888
Q ss_pred HHHHHHcCChHHHHHHHhcC
Q 040056 275 FHVAILHRHMNIFNLIYEQG 294 (536)
Q Consensus 275 Lh~A~~~~~~~iv~~Ll~~~ 294 (536)
||+|+.+|+.+++++|+++.
T Consensus 254 L~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 254 LMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHhcc
Confidence 88888888888888888764
No 61
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.96 E-value=3.8e-28 Score=214.88 Aligned_cols=156 Identities=26% Similarity=0.290 Sum_probs=148.1
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
+.+.++||.|++.|+.+++++|++++ .+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 12 ~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 12 SDLGKKLLEAARAGRDDEVRILMANG--ADVNAE-DASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRL 86 (169)
T ss_dssp -CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CcccchHHHHHHcCCHHHHHHHHHCC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHH
Confidence 45789999999999999999999998 788876 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+.+|..|.||+|.|+..|+.+++++|
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L 165 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHH
Confidence 99999999999999999996 8899999999999999999999999999998 888999999999999999999999999
Q ss_pred HHh
Q 040056 162 LKS 164 (536)
Q Consensus 162 l~~ 164 (536)
++.
T Consensus 166 ~~~ 168 (169)
T 2y1l_E 166 QKL 168 (169)
T ss_dssp HTC
T ss_pred HHc
Confidence 875
No 62
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.96 E-value=2e-28 Score=215.06 Aligned_cols=157 Identities=19% Similarity=0.178 Sum_probs=146.5
Q ss_pred CCccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHH
Q 040056 1 MQFSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAF 80 (536)
Q Consensus 1 ~~~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpL 80 (536)
|.-...||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+. |+.+++++|++. +.+++.+|..|.|||
T Consensus 1 m~~~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L 74 (162)
T 1ihb_A 1 MAEPWGNELASAAARGDLEQLTSLLQNN--VNVNAQ-NGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVI 74 (162)
T ss_dssp ----CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCC-CTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CcchHhhHHHHHHHcCCHHHHHHHHhCC--CCcccc-CccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHH
Confidence 4456789999999999999999999988 778776 8999999999999 999999999999 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc--ccccccchhhHHHHHHhcCchHHH
Q 040056 81 CFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK--KELTTEDRKVIFITSVDTGLYDLA 158 (536)
Q Consensus 81 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a~~~~~~~~~ 158 (536)
|+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+..+..|.||||+|+..|+.+++
T Consensus 75 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~ 153 (162)
T 1ihb_A 75 HDAARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVV 153 (162)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHH
Confidence 9999999999999999999996 8999999999999999999999999999998 478999999999999999999999
Q ss_pred HHHHHh
Q 040056 159 LKLLKS 164 (536)
Q Consensus 159 ~~ll~~ 164 (536)
+.|+++
T Consensus 154 ~~Ll~~ 159 (162)
T 1ihb_A 154 SLMQAN 159 (162)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999987
No 63
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=2.6e-28 Score=220.76 Aligned_cols=156 Identities=17% Similarity=0.157 Sum_probs=141.2
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..|+||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 33 ~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 107 (192)
T 2rfm_A 33 SYNRTPLMVACMLGMENAIDKLVENF--DKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSK--GSNVNTKDFSGKTPLMW 107 (192)
T ss_dssp TTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHhc--cccccc-cccCccHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCcHHHH
Confidence 45889999999999999999999988 677766 88899999999999999999999998 78899999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++++ ++.+|..|.||+|+|+..|+.+++++|
T Consensus 108 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~L 186 (192)
T 2rfm_A 108 SIIFGYSEMSYFLLEHGANV-NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186 (192)
T ss_dssp HHHHTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHH
Confidence 99999999999999999996 8889999999999999999999999999988 788889999999999999999999999
Q ss_pred HHh
Q 040056 162 LKS 164 (536)
Q Consensus 162 l~~ 164 (536)
++.
T Consensus 187 l~~ 189 (192)
T 2rfm_A 187 TEV 189 (192)
T ss_dssp HHH
T ss_pred Hhc
Confidence 886
No 64
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.96 E-value=3.3e-28 Score=220.04 Aligned_cols=162 Identities=19% Similarity=0.174 Sum_probs=153.3
Q ss_pred hhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCc
Q 040056 33 LCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMP 112 (536)
Q Consensus 33 ~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 112 (536)
++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.|
T Consensus 28 ~n~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t 103 (192)
T 2rfm_A 28 RNYR-DSYNRTPLMVACMLGMENAIDKLVEN--FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKT 103 (192)
T ss_dssp HTCC-CTTCCCHHHHHHHHTCGGGHHHHHHH--HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCC
T ss_pred HhCc-CCCCCCHHHHHHHcCCHHHHHHHHHh--ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCc
Confidence 4444 89999999999999999999999999 7899999999999999999999999999999999996 899999999
Q ss_pred HHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCC
Q 040056 113 PLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFA 191 (536)
Q Consensus 113 pL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~ 191 (536)
|||+|+..|+.+++++|+++++ ++..|..|.||||+|+..|+.++++.|++. +.+++.+|..|.||+|+|+..+
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~---- 178 (192)
T 2rfm_A 104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGLTAEASARIFG---- 178 (192)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHHTT----
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHhC----
Confidence 9999999999999999999998 888999999999999999999999999998 7888899999999999999999
Q ss_pred ccccchhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040056 192 DTVLGIMKCSRNIELMNNQALELVKCLWREI 222 (536)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ 222 (536)
..+++++|++.+
T Consensus 179 -------------------~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 179 -------------------RQEVIKIFTEVR 190 (192)
T ss_dssp -------------------CHHHHHHHHHHH
T ss_pred -------------------cHHHHHHHHhcc
Confidence 589999998876
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.95 E-value=1.9e-30 Score=257.80 Aligned_cols=268 Identities=15% Similarity=0.106 Sum_probs=176.3
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccc-hhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCc---ccccccCCCcH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSI-LCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPED---LILQDENGNTA 79 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~-~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~tp 79 (536)
+++||||.||+.|+.++|++|++++ ... .....+..|.||||+|++.|+.++|++|+++ +++ .+..+.+ .||
T Consensus 91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~g-a~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~--gad~~~~~i~~~~-~Tp 166 (376)
T 2aja_A 91 KSEVICFVAAITGCSSALDTLCLLL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL--APTEIMAMIQAEN-YHA 166 (376)
T ss_dssp CHHHHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHS--CTTTHHHHHSHHH-HHH
T ss_pred CcCCHHHHHHHcCCHHHHHHHHHcC-CcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhC--CCCccccccCCCC-CCH
Confidence 4679999999999999999999998 211 1112255688999999999999999999999 654 2333333 899
Q ss_pred HHHHHHcCCHHHHHHHHhcCCCcccC--CCCCCCcHHHHHH-HcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchH
Q 040056 80 FCFAAAAGAVDIANLMLKKNPSLLGI--RGSKNMPPLYFAA-LFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYD 156 (536)
Q Consensus 80 Lh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~ 156 (536)
||+|+..|+.++|++|+++|+++ .. .|.+|.||||+|+ .+|+.+++++|++.++ .|.||||.|+..|+.+
T Consensus 167 Lh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga------~~~taL~~Aa~~g~~e 239 (376)
T 2aja_A 167 FRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV------MLAYAEIHEFEYGEKY 239 (376)
T ss_dssp HHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH------HHHHHHHCTTTTTTTT
T ss_pred HHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC------ccchHHHHHHHCCCHH
Confidence 99999999999999999999996 55 7888999999999 9999999999999663 4899999999999999
Q ss_pred HHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccch------hhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHH
Q 040056 157 LALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGI------MKCSRNIELMNNQALELVKCLWREIVRQEDVDV 230 (536)
Q Consensus 157 ~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~ 230 (536)
++++|++. +.+.+..+ ++++.|+.+|+......... ++...... .....+.+++|++..........
T Consensus 240 vv~lL~~~-ga~~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~--~~~~~~~~~~Ll~~~~vk~l~~~ 312 (376)
T 2aja_A 240 VNPFIARH-VNRLKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRN--DEVLLDDIRFLLSIPGIKALAPT 312 (376)
T ss_dssp HHHHHHHH-HHHHHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHC--CGGGHHHHHHHHTSTTTGGGSSC
T ss_pred HHHHHHhc-Cccccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcc--hhhHHHHHHHHHhChhhhhhhcc
Confidence 99999988 55554443 47888888885321100000 00000000 01124555555542110000000
Q ss_pred HHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhc
Q 040056 231 AEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQ 293 (536)
Q Consensus 231 ~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~ 293 (536)
....+.+.+|||+|++.|+.++++.|++.+ ..+|..|+|++.+|-..|+.++.+.-+++
T Consensus 313 g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (376)
T 2aja_A 313 ATIPGDANELLRLALRLGNQGACALLLSIP----SVLALTKANNYYINETGGRLDLRAVALEH 371 (376)
T ss_dssp CSSTTCCCHHHHHHHHHTCTTHHHHHTTSH----HHHHSCC----------------------
T ss_pred CCCCCCccHHHHHHHHcCcHHHHHHHHcCh----HHHHHHHHhccccccccccccHHHHHHHH
Confidence 001234589999999999999999999753 56788999999999999999998875543
No 66
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.95 E-value=7.8e-28 Score=209.80 Aligned_cols=154 Identities=20% Similarity=0.197 Sum_probs=145.8
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
.+.|+||.|+..|+.+.++.|++.. +.+++.. |..|.||||+ +..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 75 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRE-LVHPDAL-NRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDA 75 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCC-CTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhh-CcCcccc-CCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHH
Confidence 3679999999999999999999996 6778776 8999999999 999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++. + .+..|..|.||||+|+..|+.++++.|+
T Consensus 76 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 76 ARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQ 153 (156)
T ss_dssp HHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 9999999999999999996 89999999999999999999999999999 6 8889999999999999999999999998
Q ss_pred Hh
Q 040056 163 KS 164 (536)
Q Consensus 163 ~~ 164 (536)
++
T Consensus 154 ~~ 155 (156)
T 1bd8_A 154 GH 155 (156)
T ss_dssp TT
T ss_pred hh
Confidence 75
No 67
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.95 E-value=9.5e-28 Score=208.57 Aligned_cols=151 Identities=21% Similarity=0.209 Sum_probs=142.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
+..|+||.|++.|+.+.+++|++.+ .+++ .+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~~g--~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 74 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMANG--APFT--TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHT--CCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTT--TCCTTCCCTTCCCHHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHHcC--CCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHH
Confidence 3579999999999999999999999 4444 388999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+ ++.++..|.||+|+|+..|+.+++++|
T Consensus 75 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 9999999999999999996 8999999999999999999999999999998 888999999999999999999999876
No 68
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=9.9e-28 Score=212.83 Aligned_cols=161 Identities=15% Similarity=0.109 Sum_probs=149.5
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHc
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALF 120 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 120 (536)
+.||||.|+..|+.++++.|++.. +..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 468999999999999999999994 4448999999999999999999999999999999996 88999999999999999
Q ss_pred CCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhh
Q 040056 121 GQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMK 199 (536)
Q Consensus 121 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 199 (536)
|+.+++++|+++++ .+..|..|.||||+|+..|+.++++.|++. +.+++.+|..|.||||+|+..+
T Consensus 80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~------------ 146 (172)
T 3v30_A 80 GYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADSGYTPMDLAVALG------------ 146 (172)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT------------
T ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHhC------------
Confidence 99999999999998 888999999999999999999999999998 7888899999999999999998
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 200 CSRNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
..+++++|++++.+...
T Consensus 147 -----------~~~~~~~L~~~~~~~~~ 163 (172)
T 3v30_A 147 -----------YRKVQQVIENHILKLFQ 163 (172)
T ss_dssp -----------CHHHHHHHHHHHHHHSC
T ss_pred -----------cHHHHHHHHHHHHHHhc
Confidence 58999999999887665
No 69
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.95 E-value=4.6e-28 Score=216.49 Aligned_cols=166 Identities=16% Similarity=0.138 Sum_probs=152.5
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
++.++||.|+..|+.+.++.|++.+ +.+++.. |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 4 ~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 4 EFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQG-DDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLA 79 (179)
T ss_dssp ---CCHHHHHHHTCHHHHHHHHHCT-TSCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHhcC-ccccccc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence 5789999999999999999999997 6778776 99999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+.+|..|.||++.|+..++.++++.|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~ 158 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAE 158 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996 8999999999999999999999999999999 8889999999999999999999999999
Q ss_pred HhChhhhhccccC
Q 040056 163 KSDRQLALTHHVQ 175 (536)
Q Consensus 163 ~~~~~~~~~~d~~ 175 (536)
+. +.+++..+..
T Consensus 159 ~~-g~~~~~~~~~ 170 (179)
T 3f6q_A 159 KM-GQNLNRIPYK 170 (179)
T ss_dssp HT-TCCCSCBCCC
T ss_pred Hh-hcCcccCCcc
Confidence 88 5555554443
No 70
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.95 E-value=1.4e-27 Score=210.72 Aligned_cols=160 Identities=13% Similarity=0.127 Sum_probs=151.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAAL 119 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 119 (536)
.|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQ--ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHc--CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 578999999999999999999999 7899999999999999999999999999999999996 8899999999999999
Q ss_pred cCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchh
Q 040056 120 FGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIM 198 (536)
Q Consensus 120 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~ 198 (536)
.|+.+++++|++.++ .+..|..|.||||.|+..|+.++++.|++. +.+++.+|..|.||||+|+..+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~----------- 146 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIETDSGYNSMDLAVALG----------- 146 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHT-----------
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcC-----------
Confidence 999999999999998 888999999999999999999999999997 7888899999999999999999
Q ss_pred hhhhhhhhhhHhHHHHHHHHHHHHhcCC
Q 040056 199 KCSRNIELMNNQALELVKCLWREIVRQE 226 (536)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~ 226 (536)
..+++++|++++.+..
T Consensus 147 ------------~~~~~~~L~~~~~~~~ 162 (167)
T 3v31_A 147 ------------YRSVQQVIESHLLKLL 162 (167)
T ss_dssp ------------CHHHHHHHHHHHHHHC
T ss_pred ------------cHHHHHHHHHHHHHHH
Confidence 5899999999887654
No 71
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.95 E-value=7.1e-28 Score=211.48 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=147.0
Q ss_pred CCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHH
Q 040056 39 DGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAA 118 (536)
Q Consensus 39 ~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 118 (536)
....||||.|+..|+.+++++|+++ +.+++.+|..|.||||+|+. |+.+++++|++.|+++ +.+|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQN--NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTS--CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhC--CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHH
Confidence 3567999999999999999999998 89999999999999999999 9999999999999996 889999999999999
Q ss_pred HcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccch
Q 040056 119 LFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGI 197 (536)
Q Consensus 119 ~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~ 197 (536)
..|+.+++++|+++++ ++.+|..|.||||+|+..|+.+++++|++......+..|..|.||||+|+..+
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~---------- 148 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG---------- 148 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTT----------
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcC----------
Confidence 9999999999999998 88899999999999999999999999999966667899999999999999999
Q ss_pred hhhhhhhhhhhHhHHHHHHHHHHHHhc
Q 040056 198 MKCSRNIELMNNQALELVKCLWREIVR 224 (536)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~L~~~~~~ 224 (536)
..+++++|+++|++
T Consensus 149 -------------~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 149 -------------RNEVVSLMQANGAG 162 (162)
T ss_dssp -------------CHHHHHHHHHTC--
T ss_pred -------------CHHHHHHHHHhCCC
Confidence 58899999887753
No 72
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.95 E-value=6.8e-28 Score=212.35 Aligned_cols=156 Identities=21% Similarity=0.241 Sum_probs=146.2
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|.|+||.|++.|+.+.++.|++.+ +.+++.. +..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 6 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 81 (165)
T 3twr_A 6 SEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDI-EGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVPLHN 81 (165)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCT-TTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred chhhHHHHHHHHhCCHHHHHHHHHcC-CCCcccc-ccCCCCHHHHHHHcChHHHHHHHHhc--CCCCCccCCCCCCHHHH
Confidence 35889999999999999999999987 6666665 88899999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKL 161 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~l 161 (536)
|+..|+.+++++|++.|+++ +.+|..|.||||+|+..|+.+++++|+++++ ++.+|..|.||+|+|.. ++.+++++|
T Consensus 82 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 82 ACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHH
Confidence 99999999999999999996 8999999999999999999999999999998 88899999999999777 889999999
Q ss_pred HHh
Q 040056 162 LKS 164 (536)
Q Consensus 162 l~~ 164 (536)
++.
T Consensus 160 ~~~ 162 (165)
T 3twr_A 160 RGD 162 (165)
T ss_dssp HTC
T ss_pred hhc
Confidence 876
No 73
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.95 E-value=3e-27 Score=209.09 Aligned_cols=158 Identities=22% Similarity=0.231 Sum_probs=147.2
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
...+.||||.|++.|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHH
Confidence 56678999999999999999999999 8999999999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccc
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLG 196 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 196 (536)
+..|+.+++++|+++++ .+..|..|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+|+..+
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~l~~A~~~~--------- 157 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQDKFGKTAFDISIDNG--------- 157 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT---------
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHhC---------
Confidence 99999999999999998 888999999999999999999999999998 7788899999999999999999
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHH
Q 040056 197 IMKCSRNIELMNNQALELVKCLWREI 222 (536)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~L~~~~ 222 (536)
+.+++++|++.|
T Consensus 158 --------------~~~~~~~L~~~G 169 (169)
T 2y1l_E 158 --------------NEDLAEILQKLN 169 (169)
T ss_dssp --------------CHHHHHHHHTC-
T ss_pred --------------CHHHHHHHHHcC
Confidence 588888887643
No 74
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=5.1e-28 Score=226.82 Aligned_cols=210 Identities=12% Similarity=0.078 Sum_probs=115.3
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAAL 119 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 119 (536)
.|.||||.|++.|+.+.++.|+++ |.+++. +..|.||||.|+..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus 4 ~g~t~L~~a~~~~~~~~~~~ll~~--g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 4 TGQVSLPPGKRTNLRKTGSERIAH--GMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAVC 79 (239)
T ss_dssp ------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHHH
T ss_pred cccccCchhhhhhhHHHHHHHhcc--CCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHH
Confidence 466666666666666666666666 555553 345666666666666666666666666664 5666666666666666
Q ss_pred cCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhh
Q 040056 120 FGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMK 199 (536)
Q Consensus 120 ~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 199 (536)
.|+.+++++|+++++ +++.+|.+|
T Consensus 80 ~g~~~~v~~Ll~~ga---------------------------------~~~~~d~~g----------------------- 103 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGV---------------------------------NVNAADSDG----------------------- 103 (239)
T ss_dssp HTCHHHHHHHHHHTC---------------------------------CTTCCCTTC-----------------------
T ss_pred cCCHHHHHHHHHcCC---------------------------------CCCccCCCC-----------------------
Confidence 666666666665442 222233333
Q ss_pred hhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCC-hhHHHH
Q 040056 200 CSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGR-SIFHVA 278 (536)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A 278 (536)
.||||+|+..|+.+++++|++++++ ++.+|..|. ||||+|
T Consensus 104 --------------------------------------~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a 144 (239)
T 1ycs_B 104 --------------------------------------WTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKC 144 (239)
T ss_dssp --------------------------------------CCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHC
T ss_pred --------------------------------------CCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHH
Confidence 4555555555567777777777777 677777666 888888
Q ss_pred --HHcCChHHHHHHHhcCcchhhh-----hccccCCCCcHhHHHhhCCCCCCcccccchHHhhHHHHHHHHHhHhhcCCc
Q 040056 279 --ILHRHMNIFNLIYEQGFNKQLL-----ATYLDSCGNNILHLAAKYPTLSPYRTVSGAALEMQRELLIYKEVEMIVQPS 351 (536)
Q Consensus 279 --~~~~~~~iv~~Ll~~~~~~~~~-----~~~~d~~G~TpLh~A~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 351 (536)
+..|+.+++++|++.|++.+.. ....|..|.||++++.+.|. +++.+. ..+.
T Consensus 145 ~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~-------------------~~~~ 203 (239)
T 1ycs_B 145 EEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGD--CMTIIH-------------------REDE 203 (239)
T ss_dssp CSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC--EEEECC-------------------CCTT
T ss_pred HHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCC--EEEEEE-------------------ecCC
Confidence 7778889999999888877631 11238889999999999886 344441 1111
Q ss_pred c------ccccCCCCCCchhhhHH
Q 040056 352 Y------KEMKNYDGKTPRELFTV 369 (536)
Q Consensus 352 ~------~~~~n~~g~tpl~~a~~ 369 (536)
+ ....++.|.+|..+...
T Consensus 204 ~~~~Ww~~~~~~~~G~~P~~yv~~ 227 (239)
T 1ycs_B 204 DEIEWWWARLNDKEGYVPRNLLGL 227 (239)
T ss_dssp SCSSEEEEEETTEEEEEEGGGEEC
T ss_pred CCCCEEEEEECCcEEEeehHHeeE
Confidence 1 23566778899888653
No 75
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.94 E-value=7.3e-29 Score=230.57 Aligned_cols=176 Identities=16% Similarity=0.094 Sum_probs=157.1
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..+.||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|++. +++++.+|..|.||||+
T Consensus 19 ~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga~~n~~d~~g~tpLh~ 93 (229)
T 2vge_A 19 LNPLVLLLDAALTGELEVVQQAVKEM--NDPSQP-NEEGITALHNAICGANYSIVDFLITA--GANVNSPDSHGWTPLHC 93 (229)
T ss_dssp SCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred cchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHH
Confidence 46889999999999999999999998 788876 99999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCC-CCCCCcHHHHH--HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIR-GSKNMPPLYFA--ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLA 158 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~-~~~g~tpL~~A--~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~ 158 (536)
|+..|+.+++++|++.|+++ +.+ +.+|.||||+| +..|+.+++++|++.|+ .+..+..|.++++.+...+..
T Consensus 94 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~--- 169 (229)
T 2vge_A 94 AASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGD--- 169 (229)
T ss_dssp HHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTT---
T ss_pred HHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhcccc---
Confidence 99999999999999999997 555 47999999999 99999999999999999 888899999998866555433
Q ss_pred HHHHHhChhh--hhccccCcCcHHHHHhcCCC
Q 040056 159 LKLLKSDRQL--ALTHHVQHGTALHMLARNPS 188 (536)
Q Consensus 159 ~~ll~~~~~~--~~~~d~~g~t~Lh~a~~~~~ 188 (536)
+.+++. +.+ ++.+|.+|+||||+|+..|+
T Consensus 170 ~~ll~~-ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 170 ELSFRE-GESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp BCCBCT-TCEEEEEESSCTTCSSEEEEEETTE
T ss_pred ccCccc-cccccccccCCCcccHHHHHHHcCC
Confidence 344444 555 66789999999999999995
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=6.4e-27 Score=209.05 Aligned_cols=164 Identities=13% Similarity=0.103 Sum_probs=150.5
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
++++.++||.|+..|+.+++++|++.. +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|
T Consensus 2 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 79 (179)
T 3f6q_A 2 SPEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLA 79 (179)
T ss_dssp -----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHH
Confidence 356789999999999999999999986 7789999999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccc
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLG 196 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 196 (536)
+..|+.+++++|+++++ .+..|..|.||||+|+..|+.++++.|++. +.+++.+|..|.||||+|+..+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~tpl~~A~~~~--------- 149 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNKYGEMPVDKAKAPL--------- 149 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCSSBCCTTSCCGGGGSCHHH---------
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC-CCCcchhccCCCCcHHHHHHHH---------
Confidence 99999999999999999 888999999999999999999999999998 7888999999999999999877
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 197 IMKCSRNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
..+++++|++.|++++.
T Consensus 150 --------------~~~~~~~L~~~g~~~~~ 166 (179)
T 3f6q_A 150 --------------RELLRERAEKMGQNLNR 166 (179)
T ss_dssp --------------HHHHHHHHHHTTCCCSC
T ss_pred --------------HHHHHHHHHHhhcCccc
Confidence 68888888888887765
No 77
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.94 E-value=1.5e-27 Score=223.68 Aligned_cols=178 Identities=13% Similarity=0.069 Sum_probs=131.5
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
+.|.||||.|++.|+.+.++.|++++ .+++. ++.|.||||.|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 76 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF--NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHN 76 (239)
T ss_dssp --------------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccC--CCccc--CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHH
Confidence 57999999999999999999999999 67763 57899999999999999999999999 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchh-hHHHHH--HhcCchHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRK-VIFITS--VDTGLYDLA 158 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a--~~~~~~~~~ 158 (536)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++ .+..+..|. ||+|.| +..|+.+++
T Consensus 77 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~ 155 (239)
T 1ycs_B 77 AVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 155 (239)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHH
Confidence 99999999999999999996 8999999999999999999999999999999 777777766 999999 788999999
Q ss_pred HHHHHhChhhhhcc---------ccCcCcHHHHHhcCCC
Q 040056 159 LKLLKSDRQLALTH---------HVQHGTALHMLARNPS 188 (536)
Q Consensus 159 ~~ll~~~~~~~~~~---------d~~g~t~Lh~a~~~~~ 188 (536)
+.|++. +.+.+.. +..+.++++++.+.|.
T Consensus 156 ~~Ll~~-~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~ 193 (239)
T 1ycs_B 156 QFLYGV-QEKMGIMNKGVIYALWDYEPQNDDELPMKEGD 193 (239)
T ss_dssp HHHHHH-HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSC
T ss_pred HHHHHh-hhcccccccceEEEEeccCCCCCCcccccCCC
Confidence 999998 5555443 6668888888888774
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.94 E-value=4.5e-27 Score=207.08 Aligned_cols=159 Identities=15% Similarity=0.191 Sum_probs=146.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
|.+|.||||.|++.|+.++++.|++.. +.+++..+..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 677899999999999999999999975 7788889999999999999999999999999999996 89999999999999
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccc
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLG 196 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 196 (536)
+..|+.+++++|+++++ ++..|..|.||||+|+..|+.++++.|++. +.+++.+|.+|.||||+|+. +
T Consensus 83 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~a~~-~--------- 151 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-GADPTKKNRDGNTPLDLVKD-G--------- 151 (165)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCTGGGSCT-T---------
T ss_pred HHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCChhHhHhc-C---------
Confidence 99999999999999999 888999999999999999999999999998 78889999999999999877 5
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHh
Q 040056 197 IMKCSRNIELMNNQALELVKCLWREIV 223 (536)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~L~~~~~ 223 (536)
..+++++|++.|+
T Consensus 152 --------------~~~i~~~L~~~gA 164 (165)
T 3twr_A 152 --------------DTDIQDLLRGDAA 164 (165)
T ss_dssp --------------CHHHHHHHHTC--
T ss_pred --------------ChHHHHHHhhccc
Confidence 3688888887653
No 79
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.94 E-value=2.6e-26 Score=199.49 Aligned_cols=142 Identities=18% Similarity=0.133 Sum_probs=134.7
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHc
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALF 120 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 120 (536)
..||||.|++.|+.+++++|++. +.+++ .|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~--g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMAN--GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH--TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHc--CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHc
Confidence 46899999999999999999999 66665 6889999999999999999999999999996 88999999999999999
Q ss_pred CCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCC
Q 040056 121 GQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 121 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~ 187 (536)
|+.+++++|+++++ ++.+|..|.||||+|+..|+.++++.|++. +.+++.+|..|.||||+|+..+
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~l~~A~~~~ 144 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY-GADVHTQSKFCKTAFDISIDNG 144 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTT
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCCHHHHHHHcC
Confidence 99999999999998 888999999999999999999999999998 7888899999999999999999
No 80
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.94 E-value=1.4e-26 Score=201.78 Aligned_cols=153 Identities=20% Similarity=0.123 Sum_probs=143.8
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHc
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALF 120 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 120 (536)
+.||||.|+..|+.+++++|++.. +.+++.+|..|.||||+ +..|+.+++++|++.|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhh-CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 579999999999999999999984 77899999999999999 9999999999999999996 89999999999999999
Q ss_pred CCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccchhh
Q 040056 121 GQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLGIMK 199 (536)
Q Consensus 121 g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~~~~ 199 (536)
|+.+++++|++.|+ ++.+|..|.||||.|+..|+.+++++|++. .+++.+|.+|.||||+|+..+
T Consensus 79 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~------------ 144 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRG------------ 144 (156)
T ss_dssp TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSC------------
T ss_pred CcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcC------------
Confidence 99999999999998 888999999999999999999999999998 778889999999999999999
Q ss_pred hhhhhhhhhHhHHHHHHHHHHH
Q 040056 200 CSRNIELMNNQALELVKCLWRE 221 (536)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~L~~~ 221 (536)
..+++++|+++
T Consensus 145 -----------~~~~v~~Ll~~ 155 (156)
T 1bd8_A 145 -----------AQDLVDILQGH 155 (156)
T ss_dssp -----------CHHHHHHHHTT
T ss_pred -----------cHHHHHHHHhh
Confidence 58888888753
No 81
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.93 E-value=4.5e-26 Score=204.13 Aligned_cols=154 Identities=11% Similarity=0.001 Sum_probs=139.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCH----HHHHHHHhcCCCCcccccccCCCcH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRT----SFVQQLLNFMDPEDLILQDENGNTA 79 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~tp 79 (536)
+++++||.|++.|+.+.++.+++.+ . +...+..|.||||+|+..|+. +++++|+++ |++++.+|..|.||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~-~---~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~--Gadvn~~d~~g~Tp 78 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKG-Y---EDKESVLKSNILYDVLRNNNDEARYKISMFLINK--GADIKSRTKEGTTL 78 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHS-S---SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHT--TCCSSCCCTTCCCT
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcC-c---ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHC--CCCCCCCCCCCCcH
Confidence 5789999999999999999999887 2 333236799999999999985 599999999 89999999999999
Q ss_pred HHHHHHcCC------HHHHHHHHhcCCCcccCCCCCCC-cHHHHHHHcCC-----HHHHHHhhh-cCc-ccccccchhhH
Q 040056 80 FCFAAAAGA------VDIANLMLKKNPSLLGIRGSKNM-PPLYFAALFGQ-----TDTASFLFH-RSK-KELTTEDRKVI 145 (536)
Q Consensus 80 Lh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g~-----~~~v~~Ll~-~~~-~~~~~~~g~t~ 145 (536)
||+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+. .+++++|++ +|+ ++.+|..|.||
T Consensus 79 Lh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~Tp 157 (186)
T 3t8k_A 79 FFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTA 157 (186)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCH
Confidence 999999987 68899999999997 89999999 99999999543 569999999 888 89999999999
Q ss_pred HHHHHhcCchHHHHHHHHh
Q 040056 146 FITSVDTGLYDLALKLLKS 164 (536)
Q Consensus 146 L~~a~~~~~~~~~~~ll~~ 164 (536)
||+|++.|+.++++.|.+.
T Consensus 158 L~~A~~~~~~~~v~~L~~~ 176 (186)
T 3t8k_A 158 LEFVKRCQKPIALKMMEDY 176 (186)
T ss_dssp HHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999877
No 82
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.92 E-value=8.1e-25 Score=185.92 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=110.2
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
..+.||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 12 SDLGKKLLEAARAGQDDEVRILMANG--ADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHL 86 (136)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHH
T ss_pred ccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHH
Confidence 45789999999999999999999988 677766 88899999999999999999999988 78888899999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcC
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS 133 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 133 (536)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999886 788889999999999999999999988764
No 83
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.92 E-value=2.6e-25 Score=193.82 Aligned_cols=137 Identities=19% Similarity=0.159 Sum_probs=98.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCc-HHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNT-AFCF 82 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~t-pLh~ 82 (536)
.|.||||.|+..|+.+++++|++++ .+++.+ |..|.||||+|+ .|+.+++++|++. +.+++.+|..|.| |||+
T Consensus 11 ~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~-~~~~~~v~~Ll~~--g~~~~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 11 PSADWLATAAARGRVEEVRALLEAG--ANPNAP-NSYGRRPIQVMM-MGSARVAELLLLH--GAEPNCADPATLTRPVHD 84 (156)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCC-CSSSCCTTTSSC-TTCHHHHHHHHTT--TCCCCCCCTTTCCCHHHH
T ss_pred cchHHHHHHHHcCCHHHHHHHHHcC--CCCCCC-CCCCCCHHHHHH-cCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHH
Confidence 4678888888888888888888777 667665 777888888874 7888888888887 7778888888887 8888
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFI 147 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~ 147 (536)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|+ ++.++..|.|+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 88888888888888888875 7777888888888888888888888888777 6666666666554
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.92 E-value=5.7e-25 Score=186.88 Aligned_cols=123 Identities=19% Similarity=0.145 Sum_probs=65.4
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccC-CCcHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDEN-GNTAFCF 82 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~tpLh~ 82 (536)
.|+||||.|+..|+.+++++|++.+ .+++.+ |..|.||||+|+. |+.+++++|+++ +.+++.+|.. |.||||+
T Consensus 11 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~~ 84 (136)
T 1d9s_A 11 SSDAGLATAAARGQVETVRQLLEAG--ADPNAL-NRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVHD 84 (136)
T ss_dssp CCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCC-CTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHcC--CCcCCc-CCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHHH
Confidence 3455555555555555555555554 444443 4555555555555 555555555555 4555555555 5555555
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcC
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS 133 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 133 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 85 AAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 55555555555555555553 455555555555555555555555555443
No 85
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.91 E-value=4.6e-24 Score=178.36 Aligned_cols=125 Identities=25% Similarity=0.345 Sum_probs=115.6
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
+|+||||.|++.|+.+++++|++.+ .+++.. +..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A 75 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLA 75 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHT--CCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcC--CCCCCc-CCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHH
Confidence 5899999999999999999999988 677766 88999999999999999999999998 889999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK 134 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 134 (536)
+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus 76 ~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 76 ARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 9999999999999999996 8889999999999999999999999998874
No 86
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.91 E-value=1.7e-24 Score=183.89 Aligned_cols=129 Identities=18% Similarity=0.126 Sum_probs=122.8
Q ss_pred cchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCC-
Q 040056 31 SILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSK- 109 (536)
Q Consensus 31 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~- 109 (536)
.+++.+ +..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+. |+.+++++|+++|+++ +.+|..
T Consensus 3 ~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~ 77 (136)
T 1d9s_A 3 PGIHML-GGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPAT 77 (136)
T ss_dssp CCCSCC-CCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTT
T ss_pred CCccCC-CCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCC
Confidence 456666 88999999999999999999999999 89999999999999999999 9999999999999996 888988
Q ss_pred CCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHh
Q 040056 110 NMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKS 164 (536)
Q Consensus 110 g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 164 (536)
|.||||+|+..|+.+++++|+++++ ++.+|..|.||||+|+..++.+++++|+++
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999999999999999999 888999999999999999999999999987
No 87
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.91 E-value=1.3e-24 Score=189.40 Aligned_cols=141 Identities=16% Similarity=0.088 Sum_probs=118.6
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCc-HHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMP-PLYF 116 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL~~ 116 (536)
+..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+ .|+.+++++|++.|+++ +.+|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 77899999999999999999999999 8999999999999999995 89999999999999996 899999999 9999
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHH
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHML 183 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a 183 (536)
|+..|+.+++++|+++++ ++.+|..|.||||+|+..|+.+++++|++. +.+++.+|..|.||.+.+
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~t~~~~~ 151 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRGSNHARIDAAEGP 151 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC-C-----------------
T ss_pred HHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc-CCCCCccCcCcCcccccC
Confidence 999999999999999998 888999999999999999999999999988 888889999999988754
No 88
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.90 E-value=3.5e-24 Score=191.77 Aligned_cols=159 Identities=11% Similarity=0.020 Sum_probs=139.4
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-cCCCcHHHHHHHcCCH----HHHHHHHhcCCCcccCCCCCCCcHHH
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQD-ENGNTAFCFAAAAGAV----DIANLMLKKNPSLLGIRGSKNMPPLY 115 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 115 (536)
+.++||.|++.|+.+.++.+++. + ++.++ ..|.||||+|+..|+. +++++|+++|+++ +.+|.+|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~--~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEK--G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHH--S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhc--C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 46899999999999999999987 3 34555 7799999999999975 5999999999996 899999999999
Q ss_pred HHHHcCC------HHHHHHhhhcCc-ccccccchh-hHHHHHHhcC-----chHHHHHHHHhChhhhhccccCcCcHHHH
Q 040056 116 FAALFGQ------TDTASFLFHRSK-KELTTEDRK-VIFITSVDTG-----LYDLALKLLKSDRQLALTHHVQHGTALHM 182 (536)
Q Consensus 116 ~A~~~g~------~~~v~~Ll~~~~-~~~~~~~g~-t~L~~a~~~~-----~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~ 182 (536)
+|+..|+ .+++++|+++|+ ++.+|..|. ||||+|+..+ +.++++.|++..+.+++.+|..|.||||+
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHH
Confidence 9999987 578999999999 999999999 9999999944 45689999985589999999999999999
Q ss_pred HhcCCCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHHHhcCCc
Q 040056 183 LARNPSPFADTVLGIMKCSRNIELMNNQALELVKCLWREIVRQED 227 (536)
Q Consensus 183 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~ 227 (536)
|++.+ ..+++++|.+...+.+.
T Consensus 161 A~~~~-----------------------~~~~v~~L~~~~~~~~~ 182 (186)
T 3t8k_A 161 VKRCQ-----------------------KPIALKMMEDYIKKYNL 182 (186)
T ss_dssp HHTTT-----------------------CHHHHHHHHHHHHHHTC
T ss_pred HHHcC-----------------------CHHHHHHHHHHHHHHhc
Confidence 99999 57888888877655443
No 89
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.89 E-value=2.8e-23 Score=176.33 Aligned_cols=124 Identities=26% Similarity=0.296 Sum_probs=118.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
...+.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|
T Consensus 11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A 87 (136)
T 2jab_A 11 GSDLGKKLLEAARAGQDDEVRILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLHLA 87 (136)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHH
T ss_pred cccccHHHHHHHHhCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999999 8999999999999999999999999999999999996 88999999999999
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHh
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKS 164 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 164 (536)
+..|+.+++++|+++++ .+..|..|.||||+|+..|+.++++.|++.
T Consensus 88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ 135 (136)
T 2jab_A 88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135 (136)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence 99999999999999998 888999999999999999999999999875
No 90
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.89 E-value=1.2e-22 Score=169.73 Aligned_cols=122 Identities=21% Similarity=0.344 Sum_probs=117.7
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAAL 119 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 119 (536)
+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 589999999999999999999999 8899999999999999999999999999999999996 8899999999999999
Q ss_pred cCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHh
Q 040056 120 FGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKS 164 (536)
Q Consensus 120 ~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 164 (536)
.|+.+++++|+++++ .+..|..|.||||+|+..|+.+++++|+++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 123 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 123 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence 999999999999998 788999999999999999999999999987
No 91
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.89 E-value=4.1e-23 Score=184.93 Aligned_cols=138 Identities=19% Similarity=0.186 Sum_probs=126.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-cCCCcHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQD-ENGNTAFCF 82 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~ 82 (536)
+|.||||.|++.|+.++++.|++ + .+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+| ..|.||||+
T Consensus 43 ~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 43 EYETPWWTAARKADEQALSQLLE-D--RDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCC-CTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSSCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence 58899999999999999999999 7 678876 89999999999999999999999999 89999888 889999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..++. ..+.+++++|+..|+.++++.|.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~----------------~~~~~~l~~a~~~~~~~i~~~L~ 179 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT----------------TPKGNPMQFGRRIGLEKVINVLE 179 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT----------------CCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC----------------cccccHHHHHHHcCHHHHHHHHH
Confidence 99999999999999999996 89999999999999986543 34578999999999999999987
Q ss_pred Hh
Q 040056 163 KS 164 (536)
Q Consensus 163 ~~ 164 (536)
++
T Consensus 180 ~~ 181 (183)
T 3deo_A 180 GQ 181 (183)
T ss_dssp TC
T ss_pred Hh
Confidence 64
No 92
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.89 E-value=6.2e-23 Score=192.62 Aligned_cols=138 Identities=19% Similarity=0.186 Sum_probs=127.9
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccc-cCCCcHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQD-ENGNTAFCF 82 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~tpLh~ 82 (536)
+|+||||.|++.|+.++++.|++ + .+++.+ |..|.||||+|+..|+.++|++|+++ +++++.+| ..|.||||+
T Consensus 44 ~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~-d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 44 EYETPWWTAARKADEQALSQLLE-D--RDVDAV-DENGRTALLFVAGLGSDKCVRLLAEA--GADLDHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCB-CTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCSSSCCCHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCc-CCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCcCCCCCCCCHHHH
Confidence 58899999999999999999999 7 688876 99999999999999999999999999 89999988 889999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLL 162 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll 162 (536)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++ ...+.+||++|+..|+.++++.|+
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~----------------~~~~~~~l~~a~~~g~~~iv~~L~ 180 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK----------------TTPKGNPMQFGRRIGLEKVINVLE 180 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT----------------TCCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh----------------ccCCCCHHHHHHHcChHHHHHHHH
Confidence 99999999999999999996 8999999999999986433 246789999999999999999999
Q ss_pred Hh
Q 040056 163 KS 164 (536)
Q Consensus 163 ~~ 164 (536)
+.
T Consensus 181 ~~ 182 (244)
T 3ui2_A 181 GQ 182 (244)
T ss_dssp HH
T ss_pred Hh
Confidence 86
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.88 E-value=1.8e-23 Score=177.73 Aligned_cols=124 Identities=22% Similarity=0.160 Sum_probs=76.0
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.|+..|+.+++++|++.+ .+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+
T Consensus 8 ~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 8 HRGETLLHIASIKGDIPSVEYLLQNG--SDPNVK-DHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHD 82 (137)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcC-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHH
Confidence 34666666666666666666666665 455544 56666666666666666666666666 56666666666666666
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhc
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHR 132 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~ 132 (536)
|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..+..+++++|.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 66666666666666666664 56666666666666666655655555443
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.88 E-value=6.9e-23 Score=170.67 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=88.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
.|.||||.|+..|+.+.++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKG--EDVNRT-LEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSA 80 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSC-CTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcC--CCcCcc-CCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHH
Confidence 4678888888888888888888877 566665 77888888888888888888888887 778888888888888888
Q ss_pred HHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHH
Q 040056 84 AAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAAL 119 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 119 (536)
+..|+.+++++|+++|+++ +.+|.+|.||||+|..
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~ 115 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDN 115 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCC
T ss_pred HHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCC
Confidence 8888888888888888885 7788888888888743
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=1.1e-23 Score=188.60 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=100.1
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCC-CCCCcHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRG-SKNMPPLYF 116 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~ 116 (536)
+.+|.||||+|+..|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ .+|.||||+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 3466777777777777777777777 3567777777777777777777777777777777775 5555 777777777
Q ss_pred HHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCccccc
Q 040056 117 AALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVLG 196 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~~ 196 (536)
|+..|+.+++++|+++++ +++.+|.+|.||||+|++.+
T Consensus 117 A~~~~~~~~v~~Ll~~ga---------------------------------~~~~~d~~g~tpl~~A~~~~--------- 154 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGA---------------------------------DIEVEDERGLTALELAREIL--------- 154 (183)
T ss_dssp HHHTTCHHHHHHHHHHTC---------------------------------CTTCCCTTSCCHHHHHHHHH---------
T ss_pred HHhcCcHHHHHHHHHcCC---------------------------------CCcCCCCCCCCHHHHHHHhc---------
Confidence 777777777777776654 44566777777777776544
Q ss_pred hhhhhhhhhhhhHhHHHHHHHHHHHHhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHh
Q 040056 197 IMKCSRNIELMNNQALELVKCLWREIVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGS 259 (536)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~ 259 (536)
....+.+||++|+..|+.++++.|.++
T Consensus 155 ------------------------------------~~~~~~~~l~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 155 ------------------------------------KTTPKGNPMQFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp ------------------------------------HTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------cCcccccHHHHHHHcCHHHHHHHHHHh
Confidence 112337788888888888888877654
No 96
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.88 E-value=1.3e-22 Score=196.29 Aligned_cols=141 Identities=12% Similarity=0.100 Sum_probs=85.7
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccc------cccCCCcHHHHHHHc---CCHHHHHHHHhcCCCcccCCCC
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLIL------QDENGNTAFCFAAAA---GAVDIANLMLKKNPSLLGIRGS 108 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~------~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~ 108 (536)
...+.++||.|+..|+.+.++.|++. +.+++. +|..|.||||+|+.. |+.+++++|++.|+++ +.+|.
T Consensus 148 ~~~~~~~L~~A~~~g~~~~v~~ll~~--g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadv-n~~d~ 224 (301)
T 2b0o_E 148 CTPEPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAA 224 (301)
T ss_dssp CC-CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCT-TCCCT
T ss_pred cCchHHHHhhhhhccCHHHHHHHHhc--CCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCC-CCCCC
Confidence 33445666666666666666666666 555555 466666666666665 5666666666666664 56666
Q ss_pred CCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCC
Q 040056 109 KNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 109 ~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~ 187 (536)
+|.||||+|+..|+.+++++|+++|+ ++.+|..|.||||+|+..|+.++++.|++. +.+ .|.||||+|+..|
T Consensus 225 ~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~-ga~------~g~tpLh~A~~~g 297 (301)
T 2b0o_E 225 DGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA-QAG------TFAFPLHVDYSWV 297 (301)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH-HHH------TTSSCCC------
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-cCC------CCCChhHHHHhcC
Confidence 66666666666666666666666666 566666666666666666666666666665 221 4677788777766
Q ss_pred C
Q 040056 188 S 188 (536)
Q Consensus 188 ~ 188 (536)
+
T Consensus 298 ~ 298 (301)
T 2b0o_E 298 I 298 (301)
T ss_dssp -
T ss_pred C
Confidence 3
No 97
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.87 E-value=5.3e-23 Score=174.86 Aligned_cols=125 Identities=23% Similarity=0.214 Sum_probs=115.4
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHH
Q 040056 37 ITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYF 116 (536)
Q Consensus 37 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 116 (536)
.|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~ 82 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLHD 82 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHHH
Confidence 488999999999999999999999999 8999999999999999999999999999999999996 8899999999999
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHh
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKS 164 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~ 164 (536)
|+..|+.+++++|++.++ .+.+|..|.||+|+|+..+..++++.+.+.
T Consensus 83 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131 (137)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred HHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence 999999999999999998 888999999999999988888877766554
No 98
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.87 E-value=2.3e-22 Score=188.78 Aligned_cols=143 Identities=20% Similarity=0.208 Sum_probs=129.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCC-CCCCcHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRG-SKNMPPLYF 116 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~ 116 (536)
+.+|.||||+|++.|+.++++.|++ +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.++ ..|.||||+
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~ 117 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHM 117 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHH
Confidence 4578999999999999999999998 4789999999999999999999999999999999997 6666 889999999
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhcCCCCCCcccc
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLARNPSPFADTVL 195 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~~ 195 (536)
|+..|+.+++++|+++|+ ++.+|..|.||||+|+..+ .+..+.||||+|+..|
T Consensus 118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~------------------~~~~~~~~l~~a~~~g-------- 171 (244)
T 3ui2_A 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREIL------------------KTTPKGNPMQFGRRIG-------- 171 (244)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHH------------------TTCCCSSHHHHHHHHH--------
T ss_pred HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHH------------------hccCCCCHHHHHHHcC--------
Confidence 999999999999999999 8889999999999998642 3356899999999988
Q ss_pred chhhhhhhhhhhhHhHHHHHHHHHHHHhcC
Q 040056 196 GIMKCSRNIELMNNQALELVKCLWREIVRQ 225 (536)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 225 (536)
..+++++|.+.+.+.
T Consensus 172 ---------------~~~iv~~L~~~~~~~ 186 (244)
T 3ui2_A 172 ---------------LEKVINVLEGQVFEY 186 (244)
T ss_dssp ---------------HHHHHHHHHHHHEEE
T ss_pred ---------------hHHHHHHHHHhcccc
Confidence 688888888876543
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.87 E-value=1.2e-22 Score=188.05 Aligned_cols=125 Identities=20% Similarity=0.148 Sum_probs=71.1
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAA 84 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~ 84 (536)
|.||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.++|++|++.. +.+++.+|..|.||||+|+
T Consensus 73 g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~~-g~~~~~~d~~g~tpL~~A~ 148 (222)
T 3ehr_A 73 IDNPLHEAAKRGNLSWLRECLDNR--VGVNGL-DKAGSTALYWACHGGHKDIVEMLFTQP-NIELNQQNKLGDTALHAAA 148 (222)
T ss_dssp ESCHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHTTST-TCCCCCCCTTSCCHHHHHH
T ss_pred cccccccccccCcHHHHHHHHhCC--CCcccc-CCCCCCHHHHHHHcCCHHHHHHHHcCC-CCCccccCCCCCCHHHHHH
Confidence 456666666666666666666655 455544 555666666666666666666666553 4555666666666666666
Q ss_pred HcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc
Q 040056 85 AAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK 134 (536)
Q Consensus 85 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 134 (536)
..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++.|++.++
T Consensus 149 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~ 197 (222)
T 3ehr_A 149 WKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDA 197 (222)
T ss_dssp HHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC-------
T ss_pred HcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccch
Confidence 666666666666666664 5556666666666666666666666655554
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.87 E-value=2.1e-22 Score=167.70 Aligned_cols=115 Identities=17% Similarity=0.238 Sum_probs=104.4
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFA 117 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 117 (536)
+..|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAK--GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHT--TCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHc--CCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHH
Confidence 56789999999999999999999999 8899999999999999999999999999999999996 89999999999999
Q ss_pred HHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCch
Q 040056 118 ALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLY 155 (536)
Q Consensus 118 ~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~ 155 (536)
+..|+.+++++|+++++ ++.+|..|.||+|+|...+..
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 119 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIK 119 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHH
Confidence 99999999999999998 788888999999988544433
No 101
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.85 E-value=4.1e-22 Score=184.36 Aligned_cols=134 Identities=19% Similarity=0.257 Sum_probs=115.0
Q ss_pred CCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccCCCCCCCcHHHH
Q 040056 38 TDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKK-NPSLLGIRGSKNMPPLYF 116 (536)
Q Consensus 38 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~ 116 (536)
+.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|++. |+++ +.+|..|.||||+
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~ 146 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLDN--RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHA 146 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHH
T ss_pred ccccccccccccccCcHHHHHHHHhC--CCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHH
Confidence 67889999999999999999999998 899999999999999999999999999999999 8886 8999999999999
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccC
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQ 175 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~ 175 (536)
|+..|+.+++++|+++|+ .+.+|..|.||||+|+..++.++++.+++. +......+.+
T Consensus 147 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~-~~~~~~~~~~ 205 (222)
T 3ehr_A 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT-DAVRTLSNAE 205 (222)
T ss_dssp HHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc-chhhhccchh
Confidence 999999999999999999 888999999999999999999999999887 4444444433
No 102
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.85 E-value=3.5e-21 Score=186.13 Aligned_cols=141 Identities=16% Similarity=0.130 Sum_probs=123.5
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhh-----cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCcccccccCC
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAA-----ITDGHETVLHVATGA---KRTSFVQQLLNFMDPEDLILQDENG 76 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g 76 (536)
..++||.|+..|+.+.++.+++.+ .+++.. .+..|.||||+|+.. |+.+++++|+++ +++++.+|..|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G 226 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADG 226 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCC
Confidence 347899999999999999999988 677662 388999999999997 899999999999 89999999999
Q ss_pred CcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCcccccccchhhHHHHHHhcCch
Q 040056 77 NTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSKKELTTEDRKVIFITSVDTGLY 155 (536)
Q Consensus 77 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~ 155 (536)
+||||+|+..|+.+++++|++.|+++ +.+|.+|.||||+|+..|+.+++++|++.++ ..|.||||+|++.|+.
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga-----~~g~tpLh~A~~~g~~ 299 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQA-----GTFAFPLHVDYSWVIS 299 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH-----HTTSSCCC--------
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcC-----CCCCChhHHHHhcCCc
Confidence 99999999999999999999999996 8999999999999999999999999999886 2688999999998864
No 103
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=6.7e-21 Score=188.34 Aligned_cols=123 Identities=24% Similarity=0.248 Sum_probs=67.1
Q ss_pred ccHHHHHHHHc-CCHHHHHHHHhhcCccchhhhcC--CCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHH
Q 040056 5 IRLLLYKASLK-GEMKEIEGLLEKDYRSILCAAIT--DGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFC 81 (536)
Q Consensus 5 ~~t~L~~Aa~~-g~~~~v~~ll~~~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh 81 (536)
+.|+||.|+.. |+.++++.|++.+ .+++.. + ..|.||||+|+..|+.++|++|+++ +++++.+|..|.||||
T Consensus 199 ~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~-~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh 273 (368)
T 3jue_A 199 PGALLFRASGHPPSLPTMADALAHG--ADVNWV-NGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLH 273 (368)
T ss_dssp HHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCC-CTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CCcHHHHHHHccCCHHHHHHHHHcC--CCCCcc-ccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHH
Confidence 34455555555 5555555555555 444443 3 4555555555555555555555555 4555555555555555
Q ss_pred HHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcC
Q 040056 82 FAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRS 133 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 133 (536)
+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~ 324 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAK 324 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 555555555555555555553 555555555555555555555555555443
No 104
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.84 E-value=1.1e-20 Score=148.71 Aligned_cols=92 Identities=25% Similarity=0.398 Sum_probs=71.1
Q ss_pred CCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHH
Q 040056 40 GHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAAL 119 (536)
Q Consensus 40 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 119 (536)
+|+||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 367788888888888888888877 6777777888888888888888888888888888775 7777778888888888
Q ss_pred cCCHHHHHHhhhcCc
Q 040056 120 FGQTDTASFLFHRSK 134 (536)
Q Consensus 120 ~g~~~~v~~Ll~~~~ 134 (536)
.|+.+++++|++.|+
T Consensus 78 ~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGA 92 (93)
T ss_dssp TTCHHHHHHHHHTTC
T ss_pred cCCHHHHHHHHHcCC
Confidence 888888888877664
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.84 E-value=1.4e-20 Score=179.87 Aligned_cols=124 Identities=19% Similarity=0.198 Sum_probs=100.0
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCccchhhh-----cCCCCCcHHHHHHhc---CCHHHHHHHHhcCCCCcccccccCCC
Q 040056 6 RLLLYKASLKGEMKEIEGLLEKDYRSILCAA-----ITDGHETVLHVATGA---KRTSFVQQLLNFMDPEDLILQDENGN 77 (536)
Q Consensus 6 ~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g~ 77 (536)
.++|+.|++.|+.+.++.+++.+ .+++.. .+..|.||||+|+.. |+.+++++|+++ |++++.+|..|.
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g--~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~--ga~in~~d~~g~ 206 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADG--VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQN--SGNLDKQTGKGS 206 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTT--CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHH--CSCTTCCCTTCC
T ss_pred hhhhhhHhhhcccHHHHHHHHhh--cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHC--CCCccccCCCCC
Confidence 46788888888888888888887 443322 267788888888888 788888888888 788888888888
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc
Q 040056 78 TAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK 134 (536)
Q Consensus 78 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~ 134 (536)
||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++++
T Consensus 207 TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga 262 (278)
T 1dcq_A 207 TALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALS 262 (278)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 8888888888888888888888885 7888888888888888888888888888765
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.83 E-value=2.7e-20 Score=146.52 Aligned_cols=93 Identities=27% Similarity=0.340 Sum_probs=87.6
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFA 83 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A 83 (536)
+|+||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|.+|.||||+|
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~-d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A 75 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLA 75 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcC--CCCccc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHH
Confidence 5899999999999999999999998 788877 99999999999999999999999999 899999999999999999
Q ss_pred HHcCCHHHHHHHHhcCCC
Q 040056 84 AAAGAVDIANLMLKKNPS 101 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~~~~ 101 (536)
+..|+.+++++|+++|++
T Consensus 76 ~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 76 ARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCCHHHHHHHHHcCCC
Confidence 999999999999999874
No 107
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.82 E-value=5.8e-20 Score=175.50 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=148.8
Q ss_pred cccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc--ccccccchhhHHHHH
Q 040056 72 QDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK--KELTTEDRKVIFITS 149 (536)
Q Consensus 72 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~--~~~~~~~g~t~L~~a 149 (536)
.|..+.++++.+...|+..+.+++...-+.....+-..+.... .....-..+++..... .........++|+.|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~----~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a 137 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMI----ARKDYITAKYMERRYARKKHADTAAKLHSLCEA 137 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHH----HHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHH----HHHHHHHHHHHHhhcccccccccchhhhhhhhH
Confidence 5667888999999999888777665443321010111111211 1112222334433332 222334556899999
Q ss_pred HhcCchHHHHHHHHhChhh-----hhccccCcCcHHHHHhcC---CCCCCccccchhhhhhhhhhhhHhHHHHHHHHHHH
Q 040056 150 VDTGLYDLALKLLKSDRQL-----ALTHHVQHGTALHMLARN---PSPFADTVLGIMKCSRNIELMNNQALELVKCLWRE 221 (536)
Q Consensus 150 ~~~~~~~~~~~ll~~~~~~-----~~~~d~~g~t~Lh~a~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 221 (536)
+..|+.+.+..+++..... ++..|..|.||||+|+.. + ..+++++|+++
T Consensus 138 ~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~-----------------------~~~~v~~Ll~~ 194 (278)
T 1dcq_A 138 VKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRT-----------------------SLHIVDFLVQN 194 (278)
T ss_dssp HHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTT-----------------------THHHHHHHHHH
T ss_pred hhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccc-----------------------hHHHHHHHHHC
Confidence 9999999999998884432 344588899999999998 5 68999999999
Q ss_pred HhcCCcHHHHHhhcCCChHHHHHHHcChHHHHHHHHHhCCCcccccccCCChhHHHHHHcCChHHHHHHHhcCcchhhhh
Q 040056 222 IVRQEDVDVAEAIRKPTNLLFDAAKVGNIQFLAELIGSYPDLVHELDENGRSIFHVAILHRHMNIFNLIYEQGFNKQLLA 301 (536)
Q Consensus 222 ~~~~~~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A~~~~~~~iv~~Ll~~~~~~~~~~ 301 (536)
|++++. ++..|.||||+|+..|+.++++.|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++
T Consensus 195 ga~in~-----~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----- 263 (278)
T 1dcq_A 195 SGNLDK-----QTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG----- 263 (278)
T ss_dssp CSCTTC-----CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT-----
T ss_pred CCCccc-----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----
Confidence 999887 557789999999999999999999999999 899999999999999999999999999998753
Q ss_pred ccccCCCCcHhHHHhhC
Q 040056 302 TYLDSCGNNILHLAAKY 318 (536)
Q Consensus 302 ~~~d~~G~TpLh~A~~~ 318 (536)
.+++|.++.+
T Consensus 264 -------~~~~~~~v~~ 273 (278)
T 1dcq_A 264 -------RFNSHVHVEY 273 (278)
T ss_dssp -------CCCSSCCCCC
T ss_pred -------CCCcceeeec
Confidence 4566665543
No 108
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.82 E-value=4.8e-20 Score=191.33 Aligned_cols=135 Identities=17% Similarity=0.154 Sum_probs=107.1
Q ss_pred cHHHHHHHHcCCHHHHHHHHhhcCccchhhh-----cCCCCCcHHHHHHh---cCCHHHHHHHHhcCCCCcccccccCCC
Q 040056 6 RLLLYKASLKGEMKEIEGLLEKDYRSILCAA-----ITDGHETVLHVATG---AKRTSFVQQLLNFMDPEDLILQDENGN 77 (536)
Q Consensus 6 ~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~-----~~~~g~t~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 77 (536)
.+.||.|+..|+.+.++.|++.+ .+++.. .|..|.||||+||. .|+.++|++|+++ |+++|.+|..|+
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~~g--~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~ 208 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGN 208 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHTT--CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSC
T ss_pred HHHHHHHHhccCHHHHHHHHhhc--ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCC
Confidence 36789999999999999999888 666543 26688999999965 8889999999998 788999999999
Q ss_pred cHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHh
Q 040056 78 TAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVD 151 (536)
Q Consensus 78 tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~ 151 (536)
||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|+ .+. +|+|.+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGTFA------FPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCCC------Ccceeecc
Confidence 9999999999999999999999986 8888899999999999999999999998887 322 46665543
No 109
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.81 E-value=1.2e-19 Score=179.24 Aligned_cols=146 Identities=16% Similarity=0.182 Sum_probs=117.9
Q ss_pred CCCCcHHHHHHhc-CCHHHHHHHHhcCCCCcccccc--cCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHH
Q 040056 39 DGHETVLHVATGA-KRTSFVQQLLNFMDPEDLILQD--ENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLY 115 (536)
Q Consensus 39 ~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 115 (536)
..+.|+||.|+.. |+.++++.|+++ +.+++..| ..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3456899999999 999999999999 89999988 88999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhCh--hhhhccccCcCcHHHHHhcCC
Q 040056 116 FAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDR--QLALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 116 ~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~--~~~~~~d~~g~t~Lh~a~~~~ 187 (536)
+|+..|+.+++++|+++++ ++..|..|.||||+|+..|+.+++++|++... ......+..+.|+++.+....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 9999999999999999999 88899999999999999999999999998732 222344566778887765543
No 110
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.80 E-value=7.8e-20 Score=150.05 Aligned_cols=106 Identities=22% Similarity=0.256 Sum_probs=87.8
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHH
Q 040056 37 ITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYF 116 (536)
Q Consensus 37 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 116 (536)
.|.+|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+|+..|+.+++++|++.|+++ +.+|..|.||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSK--GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTT--TCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence 377888889998888888888888888 7888888888888999888888888888888888886 7888888888888
Q ss_pred HHHcCCHHHHHHhhhcCc-ccccccchhhH
Q 040056 117 AALFGQTDTASFLFHRSK-KELTTEDRKVI 145 (536)
Q Consensus 117 A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~ 145 (536)
|+..|+.+++++|+++|+ ++..+..|.+|
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 888888888888888887 55555555544
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.78 E-value=1.8e-19 Score=147.83 Aligned_cols=106 Identities=24% Similarity=0.244 Sum_probs=97.9
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCF 82 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~ 82 (536)
.+|+||||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +.+++.+|..|.||||+
T Consensus 7 ~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~-d~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 7 KDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNAR-SKDGNTPLHLAAKNGHAEIVKLLLAK--GADVNARSKDGNTPEHL 81 (115)
T ss_dssp CSSCCHHHHHHHHTCHHHHHHHTTTT--CCSSCC-CSSSCCTTHHHHTTTCHHHHHHHTTT--TCCTTCCCTTCCCTTHH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCc-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCCHHHH
Confidence 46999999999999999999999998 778776 89999999999999999999999999 89999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCCCcccCCCCCCCcHH
Q 040056 83 AAAAGAVDIANLMLKKNPSLLGIRGSKNMPPL 114 (536)
Q Consensus 83 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 114 (536)
|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999999996 88888898873
No 112
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.78 E-value=8.6e-19 Score=181.88 Aligned_cols=135 Identities=13% Similarity=0.134 Sum_probs=116.2
Q ss_pred CCcHHHHHHhcCCHHHHHHHHhcCCCCccccc------ccCCCcHHHHHHH---cCCHHHHHHHHhcCCCcccCCCCCCC
Q 040056 41 HETVLHVATGAKRTSFVQQLLNFMDPEDLILQ------DENGNTAFCFAAA---AGAVDIANLMLKKNPSLLGIRGSKNM 111 (536)
Q Consensus 41 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~tpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~ 111 (536)
..+.||.|+..|+.+.|+.|++. |.+++.+ |..|.||||+|++ .|+.+++++|+++|+++ +.+|.+|+
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~--g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~ 208 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFAN--GQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGN 208 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHT--TCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSC
T ss_pred cHHHHHHHHhccCHHHHHHHHhh--cccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCC
Confidence 44789999999999999999999 8888877 8899999999977 89999999999999996 89999999
Q ss_pred cHHHHHHHcCCHHHHHHhhhcCc-ccccccchhhHHHHHHhcCchHHHHHHHHhChhhhhccccCcCcHHHHHhc
Q 040056 112 PPLYFAALFGQTDTASFLFHRSK-KELTTEDRKVIFITSVDTGLYDLALKLLKSDRQLALTHHVQHGTALHMLAR 185 (536)
Q Consensus 112 tpL~~A~~~g~~~~v~~Ll~~~~-~~~~~~~g~t~L~~a~~~~~~~~~~~ll~~~~~~~~~~d~~g~t~Lh~a~~ 185 (536)
||||+|+..|+.+++++|+++|+ ++.+|..|.||||+|+..|+.++++.|++. +++.+. +|+|.+..
T Consensus 209 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~-ga~~~~------~~~h~~~~ 276 (497)
T 3lvq_E 209 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA-QAGTFA------FPLHVDYS 276 (497)
T ss_dssp CHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHT-CC------------------
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh-CCCCCC------Ccceeecc
Confidence 99999999999999999999999 889999999999999999999999999998 444433 67777654
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.74 E-value=6.1e-18 Score=137.44 Aligned_cols=90 Identities=21% Similarity=0.274 Sum_probs=84.5
Q ss_pred cCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHHHcCCHHHHHHHHhcCCCcccCCCCCCCcHHHH
Q 040056 37 ITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAAAAGAVDIANLMLKKNPSLLGIRGSKNMPPLYF 116 (536)
Q Consensus 37 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 116 (536)
.|.+|.||||+|+..|+.+++++|++. +.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~--g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~ 96 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMAN--GADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFDI 96 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHHH
Confidence 488999999999999999999999999 8999999999999999999999999999999999996 8899999999999
Q ss_pred HHHcCCHHHHHHh
Q 040056 117 AALFGQTDTASFL 129 (536)
Q Consensus 117 A~~~g~~~~v~~L 129 (536)
|+..|+.+++++|
T Consensus 97 A~~~~~~~~~~~L 109 (110)
T 2zgd_A 97 SIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHTCHHHHHHH
T ss_pred HHHcCCHHHHHHh
Confidence 9999999999987
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.69 E-value=6.8e-17 Score=131.18 Aligned_cols=89 Identities=26% Similarity=0.324 Sum_probs=83.9
Q ss_pred CccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHH
Q 040056 2 QFSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFC 81 (536)
Q Consensus 2 ~~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh 81 (536)
.-+|.|+||.|+..|+.++++.|++.+ .+++.+ |..|.||||+|+..|+.+++++|+++ +++++.+|..|.||||
T Consensus 21 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~-d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~ 95 (110)
T 2zgd_A 21 GSDLGKKLLEAARAGQDDEVRILMANG--ADVAAK-DKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFD 95 (110)
T ss_dssp -CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCC-CTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred CCccchHHHHHHHcCCHHHHHHHHHcC--CCCCcc-CCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHH
Confidence 356899999999999999999999998 788877 89999999999999999999999999 8999999999999999
Q ss_pred HHHHcCCHHHHHHH
Q 040056 82 FAAAAGAVDIANLM 95 (536)
Q Consensus 82 ~A~~~g~~~iv~~L 95 (536)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
No 115
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=75.62 E-value=22 Score=33.91 Aligned_cols=82 Identities=9% Similarity=-0.092 Sum_probs=36.9
Q ss_pred HHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc-cccccCCCcHHHHHHHcC
Q 040056 9 LYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL-ILQDENGNTAFCFAAAAG 87 (536)
Q Consensus 9 L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~tpLh~A~~~g 87 (536)
|......++.+..+.+.++-.+..+.-..|..|+..+.-....+..+....+++...|.-+ -..|..|.-.+..+....
T Consensus 41 lQ~~l~~~~~~~~~~i~~ei~~~~~~L~~d~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~ 120 (351)
T 3gvo_A 41 IQQKLERATPAERQIVFNEILQAAYQLMTDVFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESI 120 (351)
T ss_dssp HHHHHHHCCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHS
T ss_pred HHHHHhhCCHHHHHHHHHHHHHhHHHHHhChhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhC
Confidence 3334444444444444433211222223366666666666666666655555554311111 123444544444444444
Q ss_pred CHH
Q 040056 88 AVD 90 (536)
Q Consensus 88 ~~~ 90 (536)
..+
T Consensus 121 ~~~ 123 (351)
T 3gvo_A 121 SSD 123 (351)
T ss_dssp CHH
T ss_pred CHH
Confidence 433
No 116
>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X
Probab=66.56 E-value=39 Score=32.08 Aligned_cols=162 Identities=9% Similarity=0.022 Sum_probs=91.9
Q ss_pred ccccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCc-ccccccCCCcHHH
Q 040056 3 FSIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPED-LILQDENGNTAFC 81 (536)
Q Consensus 3 ~~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~~~~d~~g~tpLh 81 (536)
..|+..+......|+.+....+++.-.+..+.-..+..|.-.+..+......+-...+++...+.- --.+|..|+..+.
T Consensus 71 ~~gn~vvQklle~~~~~~~~~i~~~i~g~~~~l~~~~~G~rvvQk~le~~~~~~~~~i~~el~~~~~~L~~d~~Gn~ViQ 150 (351)
T 3gvo_A 71 VFGNYVIQKFFEFGSLDQKLALATRIRGHVLPLALQMYGCRVIQKALESISSDQQSEMVKELDGHVLKCVKDQNGNHVVQ 150 (351)
T ss_dssp TTHHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHH
T ss_pred hhhhHHHHHHHhhCCHHHHHHHHHHHHhhHHHHhhCHHhHHHHHHHHHhCCHHHHHHHHHHhhhhHHHHHHhhhhhHHHH
Confidence 346667777777787777777766431122333347888888888888887776666665531211 1235677777776
Q ss_pred HHHHcCCHHHHHHHHhcCCC-c-ccCCCCCCCcHHHHHHHcCCHH----HHHHhhhcCcccccccchhhHHHHHHhcCch
Q 040056 82 FAAAAGAVDIANLMLKKNPS-L-LGIRGSKNMPPLYFAALFGQTD----TASFLFHRSKKELTTEDRKVIFITSVDTGLY 155 (536)
Q Consensus 82 ~A~~~g~~~iv~~Ll~~~~~-~-~~~~~~~g~tpL~~A~~~g~~~----~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~ 155 (536)
.....+..+..+.+++.-.. + .-..+..|...+.-+......+ +++-|.++...-..|..|+-.+..+...+..
T Consensus 151 k~l~~~~~~~~~~i~~~~~~~~~~ls~~~~G~~Vvq~~le~~~~~~~~~ii~~l~~~~~~L~~d~~Gn~ViQ~~l~~~~~ 230 (351)
T 3gvo_A 151 KCIECVQPQSLQFIIDAFKGQVFVLSTHPYGCRVIQRILEHCTAEQTLPILEELHQHTEQLVQDQYGNYVIQHVLEHGRP 230 (351)
T ss_dssp HHHHHSCGGGTHHHHHHTTTTHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHTTHHHHHTSTTHHHHHHHHHHHSCH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHCCHHHHHHHHHHHhhhHHhcCCCchHHHHHHHHHHhCch
Confidence 66665555444444432111 0 1123455655555555544433 3333322211334778888888888877776
Q ss_pred HHHHHHHHh
Q 040056 156 DLALKLLKS 164 (536)
Q Consensus 156 ~~~~~ll~~ 164 (536)
+..+.+++.
T Consensus 231 ~~~~~i~~~ 239 (351)
T 3gvo_A 231 EDKSKIVSE 239 (351)
T ss_dssp HHHHHHHHT
T ss_pred hhHHHHHHH
Confidence 665555554
No 117
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=61.99 E-value=1.1e+02 Score=29.09 Aligned_cols=183 Identities=7% Similarity=-0.072 Sum_probs=105.7
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc-cccccCCCcHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL-ILQDENGNTAFCFA 83 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~tpLh~A 83 (536)
|.-.+..+...++.+..+.+.++-.+..+.-..|.+|+..+......+..+..+.+++...|.-. -..+..|.-.+.-+
T Consensus 42 gsR~lQ~~l~~~~~~~~~~I~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~ 121 (369)
T 3k49_A 42 GSRFIQRELATSPASEKEVIFNEIRDDAIELSNDVFGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKA 121 (369)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHGGGHHHHHHSTTTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHH
T ss_pred chHHHHHHhccCCHHHHHHHHHHHHHHHHHHhhCcccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHH
Confidence 44556667777777766666655312333334589999999999999998877777776422111 12455666666666
Q ss_pred HHcCCHHHHHHHHhc-CCCc-ccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc----ccccccchhhHHHHHHhcCchHH
Q 040056 84 AAAGAVDIANLMLKK-NPSL-LGIRGSKNMPPLYFAALFGQTDTASFLFHRSK----KELTTEDRKVIFITSVDTGLYDL 157 (536)
Q Consensus 84 ~~~g~~~iv~~Ll~~-~~~~-~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~~~~ 157 (536)
......+-...+++. .+.+ .-..|.+|.-.+......+..+..+.+++.-. .-..++.|...+..+...+..+.
T Consensus 122 le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~~l~~~~~~~~~~i~~~~~~~~~~ls~~~~Gs~Vvq~~l~~~~~~~ 201 (369)
T 3k49_A 122 LEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQKAIETIPIEKLPFILSSLTGHIYHLSTHSYGCRVIQRLLEFGSSED 201 (369)
T ss_dssp HHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHHHHHHSCGGGCHHHHHHHTTTHHHHHTSTTHHHHHHHHHHHSCHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCccCcHHHHHHHhCCHHH
Confidence 665555443334332 1111 12456667666666666655444444433221 22357788888888888877665
Q ss_pred HHHHHHhChh--hhhccccCcCcHHHHHhcCC
Q 040056 158 ALKLLKSDRQ--LALTHHVQHGTALHMLARNP 187 (536)
Q Consensus 158 ~~~ll~~~~~--~~~~~d~~g~t~Lh~a~~~~ 187 (536)
-+.+++.-.. ..-..|..|.-.+..+...+
T Consensus 202 ~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~ 233 (369)
T 3k49_A 202 QESILNELKDFIPYLIQDQYGNYVIQYVLQQD 233 (369)
T ss_dssp HHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcC
Confidence 5555554211 11235666766666666555
No 118
>3k49_A MRNA-binding protein PUF3; PUF3, pumilio, RNA binding, mitochondrial mRNA,, membrane, mitochondrion; HET: CIT; 2.50A {Saccharomyces cerevisiae} SCOP: a.118.1.0 PDB: 3k4e_A
Probab=31.52 E-value=1.9e+02 Score=27.39 Aligned_cols=149 Identities=11% Similarity=0.009 Sum_probs=80.1
Q ss_pred cccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCc-ccccccCCCcHHHH
Q 040056 4 SIRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPED-LILQDENGNTAFCF 82 (536)
Q Consensus 4 ~~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~-~~~~d~~g~tpLh~ 82 (536)
.|+..+......++.+....+++.-.+.-..-..+..|.-.+..+......+-...+++...+.- --.+|..|+..+..
T Consensus 77 ~gn~vvQkll~~~~~~~~~~i~~~~~g~~~~L~~~~~G~rVlQk~le~~~~~q~~~ii~el~~~~~~L~~d~~Gn~ViQ~ 156 (369)
T 3k49_A 77 FGNYVIQKFFEFGSKIQKNTLVDQFKGNMKQLSLQMYACRVIQKALEYIDSNQRIELVLELSDSVLQMIKDQNGNHVIQK 156 (369)
T ss_dssp TTHHHHHHHHHHCCHHHHHHHHHHHTTCHHHHHHSTTHHHHHHHHHHHSCHHHHHHHHGGGTTCHHHHHHSTTHHHHHHH
T ss_pred ccccHHHHHHHhCCHHHHHHHHHHHhhhHHHHhcChhhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCcccchHHHH
Confidence 45566666666777666666655431111222236777777777777776665555555431211 12356667766666
Q ss_pred HHHcCCHH----HHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc----ccccccchhhHHHHHHhcCc
Q 040056 83 AAAAGAVD----IANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK----KELTTEDRKVIFITSVDTGL 154 (536)
Q Consensus 83 A~~~g~~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~ 154 (536)
....+..+ +++.+..+-.. -..+..|...+.-....+..+--+.+++.-. .-..|..|+-.+..+...+.
T Consensus 157 ~l~~~~~~~~~~i~~~~~~~~~~--ls~~~~Gs~Vvq~~l~~~~~~~~~~i~~~l~~~~~~L~~d~~GnyViQ~~l~~~~ 234 (369)
T 3k49_A 157 AIETIPIEKLPFILSSLTGHIYH--LSTHSYGCRVIQRLLEFGSSEDQESILNELKDFIPYLIQDQYGNYVIQYVLQQDQ 234 (369)
T ss_dssp HHHHSCGGGCHHHHHHHTTTHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHTTTTCHHHHHHSTTHHHHHHHHHTCCT
T ss_pred HHHhCCHHHHHHHHHHHHHHHHH--HhCCCccCcHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhcCC
Confidence 66555433 33333222111 1345566666666666666544444443222 22367777777777766654
No 119
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.73 E-value=41 Score=20.06 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=12.9
Q ss_pred HHHHHHHcCCHHHHHHHH
Q 040056 8 LLYKASLKGEMKEIEGLL 25 (536)
Q Consensus 8 ~L~~Aa~~g~~~~v~~ll 25 (536)
.++.|+..||.+.++.|=
T Consensus 16 qiyvA~seGd~etv~~Le 33 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLK 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHH
Confidence 456778888888777653
No 120
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=27.90 E-value=98 Score=29.75 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=33.9
Q ss_pred HHHHcCCHHHHHHHHhhcCccchhhhcC-------------CCCCcHHHHHHhcCCHHHHHHHHhc
Q 040056 11 KASLKGEMKEIEGLLEKDYRSILCAAIT-------------DGHETVLHVATGAKRTSFVQQLLNF 63 (536)
Q Consensus 11 ~Aa~~g~~~~v~~ll~~~~~~~~~~~~~-------------~~g~t~Lh~A~~~g~~~~v~~Ll~~ 63 (536)
..+..||...|+..+..| .+++.+.+ .-|.|.+|+|++..+.+++..|+..
T Consensus 28 ~gv~e~~~~~ve~y~~~g--g~~~r~lt~~e~~lln~~~af~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSG--GDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp HHHHHTCHHHHHHHHTTT--CCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcC--CchhcccCHHHHHHhCCCcccccCchhhhhhhhhhhhhHHHHhhhc
Confidence 346679999999999887 34333211 3466777777777777777776653
No 121
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=27.74 E-value=2.7e+02 Score=23.30 Aligned_cols=134 Identities=11% Similarity=0.016 Sum_probs=86.7
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcccccccCCCcHHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDLILQDENGNTAFCFAA 84 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~tpLh~A~ 84 (536)
-.+-+-.|.+.|+++....+.+.- .+.. .-...=..|...|+.++++....+. .|+. ..+.+..
T Consensus 8 ~~~rF~LAL~lg~l~~A~e~a~~l--~~~~-----~Wk~Lg~~AL~~gn~~lAe~cy~~~--~D~~-------~L~~Ly~ 71 (177)
T 3mkq_B 8 PHIRFDLALEYGNLDAALDEAKKL--NDSI-----TWERLIQEALAQGNASLAEMIYQTQ--HSFD-------KLSFLYL 71 (177)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH--CCHH-----HHHHHHHHHHHTTCHHHHHHHHHHT--TCHH-------HHHHHHH
T ss_pred hHHHHHHHHhcCCHHHHHHHHHHh--CCHH-----HHHHHHHHHHHcCChHHHHHHHHHh--CCHH-------HHHHHHH
Confidence 456778899999999998887654 1111 1123455788899999999999882 3332 3445555
Q ss_pred HcCCHHHHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCH-HHHHHhhhcCcccccccchhhHHHHHHhcCchHHHHHHHH
Q 040056 85 AAGAVDIANLMLKKNPSLLGIRGSKNMPPLYFAALFGQT-DTASFLFHRSKKELTTEDRKVIFITSVDTGLYDLALKLLK 163 (536)
Q Consensus 85 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~-~~v~~Ll~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~ll~ 163 (536)
..|+.+-++.+.+.. ....+-....+.+...|+. +.++.|.+.+. ..-+...|-.+|..+..+.+++
T Consensus 72 ~tg~~e~L~kla~iA-----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r-------~~eA~~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIA-----QTREDFGSMLLNTFYNNSTKERSSIFAEGGS-------LPLAYAVAKANGDEAAASAFLE 139 (177)
T ss_dssp HHTCHHHHHHHHHHH-----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTC-------HHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHH-----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCC-------hHHHHHHHHHcCcHHHHHHHHH
Confidence 678888777765431 1111234577777778885 56666766542 1224455667788999999988
Q ss_pred hCh
Q 040056 164 SDR 166 (536)
Q Consensus 164 ~~~ 166 (536)
..+
T Consensus 140 ~~~ 142 (177)
T 3mkq_B 140 QAE 142 (177)
T ss_dssp HTT
T ss_pred HhC
Confidence 743
No 122
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=24.19 E-value=84 Score=29.59 Aligned_cols=20 Identities=10% Similarity=0.313 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHhHhh
Q 040056 474 ALFVSIVFVMVAFFSTFFLA 493 (536)
Q Consensus 474 ~~~~s~~~m~~af~~~~~~~ 493 (536)
++.++++++..+|++|+|-+
T Consensus 282 LTiit~IflP~T~IaGiyGM 301 (339)
T 4ev6_A 282 LTMVTTIFAVPMWITGIYGM 301 (339)
T ss_dssp HHHHHHHSSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhccC
Confidence 45678888999999999987
No 123
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=23.49 E-value=64 Score=30.77 Aligned_cols=20 Identities=10% Similarity=0.381 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHhHhHhh
Q 040056 474 ALFVSIVFVMVAFFSTFFLA 493 (536)
Q Consensus 474 ~~~~s~~~m~~af~~~~~~~ 493 (536)
++.++++++..+|++|+|-+
T Consensus 306 LTiit~IflP~T~IaGiyGM 325 (363)
T 2iub_A 306 LTIIATIFMPLTFIAGIYGM 325 (363)
T ss_dssp HHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHHHHHHHhhhcc
Confidence 35578888999999999876
No 124
>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A
Probab=21.98 E-value=1.3e+02 Score=28.12 Aligned_cols=157 Identities=10% Similarity=-0.010 Sum_probs=87.4
Q ss_pred ccHHHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHhcCCHHHHHHHHhcCCCCcc-cccccCCCcHHHHH
Q 040056 5 IRLLLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATGAKRTSFVQQLLNFMDPEDL-ILQDENGNTAFCFA 83 (536)
Q Consensus 5 ~~t~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~tpLh~A 83 (536)
|.-.+......++.+....+.++-.+....-..|..|+..+......+..+-...+++...|.-. -..+..|.-.+.-+
T Consensus 24 gsr~iQ~~l~~~~~~~~~~i~~el~~~~~~L~~d~~gn~vvQkll~~~~~~~~~~i~~~~~~~~~~l~~~~~G~rviQ~~ 103 (333)
T 3bwt_A 24 GCRFLQKQLDILGSKAADAIFEETKDYTVELMTDSFGNYLIQKLLEEVTTEQRIVLTKISSPHFVEISLNPHGTRALQKL 103 (333)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHTSTTHHHHHHHHHHHSCHHHHHHHHHHHGGGHHHHHHSTTHHHHHHHH
T ss_pred hhHHHHHHHccCCHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhCCHHHHHHHHHHHHhHHHHHHhcccccHHHHHH
Confidence 34455666667777766666655312223334588999998888888887766666654311111 12455565555555
Q ss_pred HHcCC-HH----HHHHHHhcCCCcccCCCCCCCcHHHHHHHcCCHHHHHHhhhcCc----ccccccchhhHHHHHHhcCc
Q 040056 84 AAAGA-VD----IANLMLKKNPSLLGIRGSKNMPPLYFAALFGQTDTASFLFHRSK----KELTTEDRKVIFITSVDTGL 154 (536)
Q Consensus 84 ~~~g~-~~----iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~----~~~~~~~g~t~L~~a~~~~~ 154 (536)
..... .+ +++.|...-.. -..|.+|...+......+..+-.+.+++.-. .-..++.|...+..+.+.+.
T Consensus 104 l~~~~~~~~~~~i~~el~~~~~~--L~~d~~gn~Viqk~l~~~~~~~~~~i~~~l~~~~~~l~~~~~Gs~Vvq~~l~~~~ 181 (333)
T 3bwt_A 104 IECIKTDEEAQIVVDSLRPYTVQ--LSKDLNGNHVIQKCLQRLKPENFQFIFDAISDSCIDIATHRHGCCVLQRCLDHGT 181 (333)
T ss_dssp HHHCCSHHHHHHHHHHHGGGHHH--HHTSTTHHHHHHHHHHHSCHHHHHHHHHHHHHSHHHHHTSTTHHHHHHHHHHHCC
T ss_pred HHhcCcHHHHHHHHHHHHHHHHH--HhcCCcccHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHhCC
Confidence 55432 22 23333222111 2456777766766666666655444443322 22356778888887777766
Q ss_pred hHHHHHHHH
Q 040056 155 YDLALKLLK 163 (536)
Q Consensus 155 ~~~~~~ll~ 163 (536)
.+..+.+++
T Consensus 182 ~~~~~~l~~ 190 (333)
T 3bwt_A 182 TEQCDNLCD 190 (333)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 554444444
No 125
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=20.61 E-value=93 Score=31.17 Aligned_cols=148 Identities=19% Similarity=0.071 Sum_probs=77.1
Q ss_pred HHHHHHHcCCHHHHHHHHhhcCccchhhhcCCCCCcHHHHHHh-cCC-------------HHHHHHHHhcCCCCcccccc
Q 040056 8 LLYKASLKGEMKEIEGLLEKDYRSILCAAITDGHETVLHVATG-AKR-------------TSFVQQLLNFMDPEDLILQD 73 (536)
Q Consensus 8 ~L~~Aa~~g~~~~v~~ll~~~~~~~~~~~~~~~g~t~Lh~A~~-~g~-------------~~~v~~Ll~~~~~~~~~~~d 73 (536)
.|...++.|+++....++++- ... ..+.|..-.+.|-.|+. .+. .++.+.+.+. |..++...
T Consensus 32 ~id~c~k~G~~~~A~~lf~~M-~~~-Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~--G~~Pd~~t 107 (501)
T 4g26_A 32 KLDMCSKKGDVLEALRLYDEA-RRN-GVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD--KVVPNEAT 107 (501)
T ss_dssp HHHHTTTSCCHHHHHHHHHHH-HHH-TCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT--TCCCCHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHH-HHc-CCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh--CCCCCHHH
Confidence 355667889988877777653 110 00112222344444443 222 2344445554 44333222
Q ss_pred cCCCcHHHHHHHcCCHHHHHHHHh----cCCCcccCCCCCCCc-HHHHHHHcCCHHHHHHhhhcCc-c-cccccc-hhhH
Q 040056 74 ENGNTAFCFAAAAGAVDIANLMLK----KNPSLLGIRGSKNMP-PLYFAALFGQTDTASFLFHRSK-K-ELTTED-RKVI 145 (536)
Q Consensus 74 ~~g~tpLh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~t-pL~~A~~~g~~~~v~~Ll~~~~-~-~~~~~~-g~t~ 145 (536)
-++.+...++.|+.+-+..+++ .|.. .|..-.+ .+...++.|+.+-+..+++.-. . -..|.. -.+.
T Consensus 108 --yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~----Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~L 181 (501)
T 4g26_A 108 --FTNGARLAVAKDDPEMAFDMVKQMKAFGIQ----PRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAAL 181 (501)
T ss_dssp --HHHHHHHHHHHTCHHHHHHHHHHHHHTTCC----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred --HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 2355677788898876665554 3322 1222233 3445567788765554443322 1 112222 2356
Q ss_pred HHHHHhcCchHHHHHHHHhC
Q 040056 146 FITSVDTGLYDLALKLLKSD 165 (536)
Q Consensus 146 L~~a~~~~~~~~~~~ll~~~ 165 (536)
+..+++.|..+-+..+++.-
T Consensus 182 i~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 182 LKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhhCCCHHHHHHHHHHH
Confidence 67778889999888888873
Done!