BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040058
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 372
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 64 QEERKLQLVLNLDHTLLHCR---NIKSLSSGEKYLKKQIHSFIGSLFQMANDK------- 113
++E++L L+++LD T++H + S + + + S F +
Sbjct: 14 RQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRS-FNLQEGPSGYTSCY 72
Query: 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKD 173
+K RP + FL++ S L ++++ TM T+ YA+ K++D K F R+++R+D
Sbjct: 73 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLA 132
Query: 174 RKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
+K+ L +V++DD VW D NLI + Y +F
Sbjct: 133 QKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 172
>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd
Phosphatase
Length = 442
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 35/172 (20%)
Query: 64 QEERKLQLVLNLDHTLLHC---------------------RNIKSLSSGEKYLKKQIHSF 102
++E++L L++ LD T++H R+++S + L++ +
Sbjct: 22 RQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFN-----LQEGPSGY 76
Query: 103 IGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSR 162
+ +K RP + FL++ S L ++++ TM T+ YA+ K++D K F R
Sbjct: 77 TSCYY-------IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDR 129
Query: 163 IIAREDFNGKDRKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
+++R+D +K+ L +V++DD VW D NLI + Y +F
Sbjct: 130 VLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 180
>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHQ|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C-
Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
pdb|2GHT|B Chain B, Ctd-Specific Phosphatase Scp1 In Complex With Peptide From
C-Terminal Domain Of Rna Polymerase Ii
Length = 181
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V+NLD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 11 QDSDKICVVINLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 62
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 63 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 121
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++ILD++ + + H +N + + +
Sbjct: 122 RDLRRVLILDNSPASYVFHPDNAVPVASW 150
>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
pdb|3PGL|B Chain B, Crystal Structure Of Human Small C-Terminal Domain
Phosphatase 1 (Scp1) Bound To Rabeprazole
Length = 180
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V++LD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 10 QDSDKICVVIDLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 61
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 62 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 120
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++ILD++ + + H +N + + +
Sbjct: 121 RDLRRVLILDNSPASYVFHPDNAVPVASW 149
>pdb|1TA0|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein With Associated Ligand
Length = 197
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V+ LD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 11 QDSDKICVVIXLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 62
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 63 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 121
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++ILD++ + + H +N + + +
Sbjct: 122 RDLRRVLILDNSPASYVFHPDNAVPVASW 150
>pdb|2Q5E|A Chain A, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|B Chain B, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|C Chain C, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|D Chain D, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|E Chain E, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|F Chain F, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|G Chain G, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
pdb|2Q5E|H Chain H, Crystal Structure Of Human Carboxy-Terminal Domain Rna
Polymerase Ii Polypeptide A Small Phosphatase 2
Length = 187
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 72/150 (48%), Gaps = 19/150 (12%)
Query: 62 SEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFV 121
+E+++ ++ +V++LD TL+H + K +++ + + +I G+ Q+ V RP+V
Sbjct: 11 TEEDQGRICVVIDLDETLVH-SSFKPINNADFIVPIEIE---GTTHQV----YVLKRPYV 62
Query: 122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLD----LDSKYFSSRIIAREDFNGKD--RK 175
FL + L + L T S YA+ LLD ++ F + + KD R
Sbjct: 63 DEFLRRMGELFECVLFTASLAKYADPVTDLLDRCGVFRARLFRESCVFHQGCYVKDLSRL 122
Query: 176 NPDLVRGQERGIVILDDTESVWSDHTENLI 205
DL R +ILD++ + + H EN +
Sbjct: 123 GRDL-----RKTLILDNSPASYIFHPENAV 147
>pdb|2HHL|A Chain A, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|B Chain B, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|C Chain C, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
pdb|2HHL|D Chain D, Crystal Structure Of The Human Small Ctd Phosphatase 3
Isoform 1
Length = 195
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 65/137 (47%), Gaps = 11/137 (8%)
Query: 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS 130
+V++LD TL+H + K +S+ + + +I I ++ + RP V FL++
Sbjct: 31 VVIDLDETLVHS-SFKPISNADFIVPVEIDGTIHQVYVLK-------RPHVDEFLQRMGQ 82
Query: 131 LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-GQERG-IV 188
L + L T S YA+ LLD F +R+ + DL R G+E ++
Sbjct: 83 LFECVLFTASLAKYADPVADLLD-RWGVFRARLFRESCVFHRGNYVKDLSRLGRELSKVI 141
Query: 189 ILDDTESVWSDHTENLI 205
I+D++ + + H EN +
Sbjct: 142 IVDNSPASYIFHPENAV 158
>pdb|3L0Y|A Chain A, Crystal Structure Of Scp1 Phosphatase D98a Mutant
pdb|3L0Y|B Chain B, Crystal Structure Of Scp1 Phosphatase D98a Mutant
Length = 184
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V++L TL+H + K +++ + + +I + ++ + RP V
Sbjct: 14 QDSDKICVVIDLAETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 65
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 66 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 124
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++ILD++ + + H +N + + +
Sbjct: 125 RDLRRVLILDNSPASYVFHPDNAVPVASW 153
>pdb|3L0C|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
pdb|3L0C|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant With
Trap Inorganic Phosphate
Length = 184
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V++LD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 14 QDSDKICVVIDLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 65
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 66 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 124
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++IL ++ + + H +N + + +
Sbjct: 125 RDLRRVLILANSPASYVFHPDNAVPVASW 153
>pdb|1T9Z|A Chain A, Three-Dimensional Structure Of A Rna-Polymerase Ii Binding
Protein
Length = 197
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V++LD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 11 QDSDKICVVIDLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 62
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LD F +R+ + DL R G
Sbjct: 63 FLQRXGELFECVLFTASLAKYADPVADXLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 121
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++I D++ + + H +N + + +
Sbjct: 122 RDLRRVLIXDNSPASYVFHPDNAVPVASW 150
>pdb|3L0B|A Chain A, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
pdb|3L0B|B Chain B, Crystal Structure Of Scp1 Phosphatase D206a Mutant
Phosphory Intermediate
Length = 184
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 11/149 (7%)
Query: 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
Q+ K+ +V+ LD TL+H + K +++ + + +I + ++ + RP V
Sbjct: 14 QDSDKICVVIXLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 65
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
FL++ L + L T S YA+ LLD F +R+ + DL R G
Sbjct: 66 FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 124
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
++ R ++IL ++ + + H +N + + +
Sbjct: 125 RDLRRVLILANSPASYVFHPDNAVPVASW 153
>pdb|2IPC|A Chain A, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|B Chain B, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|C Chain C, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
pdb|2IPC|D Chain D, Crystal Structure Of The Translocation Atpase Seca From
Thermus Thermophilus Reveals A Parallel, Head-To-Head
Dimer
Length = 997
Score = 34.3 bits (77), Expect = 0.096, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 123 TFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRG 182
T L+ A L D + EA +L++ K + +R + +P L+R
Sbjct: 818 TLLDTAPQLQDFPFAELRALKAEEAVERLVEAALKAYEAR---------EAELSPPLMRA 868
Query: 183 QERGIVILDDTESVWSDHTENLIVLGKYVYFR 214
ER VIL+ ++ W +H NL VL + ++ R
Sbjct: 869 VER-FVILNVVDNAWKEHLHNLDVLRQGIFLR 899
>pdb|2A9G|A Chain A, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|B Chain B, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|C Chain C, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
pdb|2A9G|D Chain D, Structure Of C406a Arginine Deiminase In Complex With
L-Arginine
Length = 418
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 266 PKVRSEFSRDV---LYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPED 322
P ++F+RD +Y W + ++ L+ + HP + +A + +W P+
Sbjct: 157 PLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK 216
Query: 323 DY 324
D+
Sbjct: 217 DH 218
>pdb|2ABR|A Chain A, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|B Chain B, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|C Chain C, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
pdb|2ABR|D Chain D, Structure Of D280a Arginine Deiminase With L-Arginine
Forming A S-Alkylthiouronium Reaction Intermediate
Length = 418
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 266 PKVRSEFSRDV---LYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPED 322
P ++F+RD +Y W + ++ L+ + HP + +A + +W P+
Sbjct: 157 PLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK 216
Query: 323 DY 324
D+
Sbjct: 217 DH 218
>pdb|2AAF|A Chain A, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|B Chain B, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|C Chain C, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
pdb|2AAF|D Chain D, Structure Of H278a Arginine Deiminase With L-Arginine
Forming A S- Alkylthiouronium Reaction Intermediate
Length = 418
Score = 30.8 bits (68), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 266 PKVRSEFSRDV---LYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPED 322
P ++F+RD +Y W + ++ L+ + HP + +A + +W P+
Sbjct: 157 PLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK 216
Query: 323 DY 324
D+
Sbjct: 217 DH 218
>pdb|1RXX|A Chain A, Structure Of Arginine Deiminase
pdb|1RXX|B Chain B, Structure Of Arginine Deiminase
pdb|1RXX|C Chain C, Structure Of Arginine Deiminase
pdb|1RXX|D Chain D, Structure Of Arginine Deiminase
Length = 421
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 266 PKVRSEFSRDV---LYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPED 322
P ++F+RD +Y W + ++ L+ + HP + +A + +W P+
Sbjct: 160 PLPNTQFTRDTTCWIYGGVTLNPXYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDK 219
Query: 323 DY 324
D+
Sbjct: 220 DH 221
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 516 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 575
Query: 227 ET 228
+T
Sbjct: 576 KT 577
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 516 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 575
Query: 227 ET 228
+T
Sbjct: 576 KT 577
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 516 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 575
Query: 227 ET 228
+T
Sbjct: 576 KT 577
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 504 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 563
Query: 227 ET 228
+T
Sbjct: 564 KT 565
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 516 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 575
Query: 227 ET 228
+T
Sbjct: 576 KT 577
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 29.6 bits (65), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 168 DFNGKDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYS 226
DF + DL+ G Q GI+ L D +SV+ + T+N ++ + +F K + +S
Sbjct: 505 DFGLDSQATIDLIDGRQPPGILALLDEQSVFPNATDNTLITKLHSHFSKKNAKYEEPRFS 564
Query: 227 ET 228
+T
Sbjct: 565 KT 566
>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction
Length = 588
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 499 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFA 578
>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
pdb|1B3U|B Chain B, Crystal Structure Of Constant Regulatory Domain Of Human
Pp2a, Pr65alpha
Length = 588
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 499 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 555
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 556 QSEVKPILEKLTQDQDVDVKYFA 578
>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|D Chain D, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2PF4|A Chain A, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|B Chain B, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|C Chain C, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
pdb|2PF4|D Chain D, Crystal Structure Of The Full-Length Simian Virus 40 Small
T Antigen Complexed With The Protein Phosphatase 2a
Aalpha Subunit
Length = 589
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 500 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 556
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 557 QSEVKPILEKLTQDQDVDVKYFA 579
>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
pdb|2PKG|B Chain B, Structure Of A Complex Between The A Subunit Of Protein
Phosphatase 2a And The Small T Antigen Of Sv40
Length = 580
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 491 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 547
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 548 QSEVKPILEKLTQDQDVDVKYFA 570
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 500 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 556
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 557 QSEVKPILEKLTQDQDVDVKYFA 579
>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|D Chain D, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
Length = 582
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 37/83 (44%), Gaps = 3/83 (3%)
Query: 78 TLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLC 137
T L C N+ S G+ K + + ++ +MA D + +R V L++ ++D
Sbjct: 493 TTLFCINVLSEVCGQDITTKHM---LPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTL 549
Query: 138 TMSTRCYAEAAVKLLDLDSKYFS 160
+ E + D+D KYF+
Sbjct: 550 QSEVKPILEKLTQDQDVDVKYFA 572
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,314,843
Number of Sequences: 62578
Number of extensions: 364037
Number of successful extensions: 839
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 826
Number of HSP's gapped (non-prelim): 58
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)