Query 040058
Match_columns 326
No_of_seqs 280 out of 1156
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 04:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040058.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040058hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0323 TFIIF-interacting CTD 100.0 1.3E-59 2.9E-64 476.8 15.6 301 25-325 88-529 (635)
2 TIGR02250 FCP1_euk FCP1-like p 100.0 3.3E-38 7.1E-43 274.2 13.6 148 66-213 4-156 (156)
3 KOG1605 TFIIF-interacting CTD 100.0 7.7E-36 1.7E-40 277.2 9.0 168 66-268 87-259 (262)
4 TIGR02251 HIF-SF_euk Dullard-l 100.0 1.2E-34 2.5E-39 253.2 15.0 156 68-252 1-160 (162)
5 PF03031 NIF: NLI interacting 100.0 2.2E-33 4.8E-38 242.6 13.5 155 69-262 1-159 (159)
6 TIGR02245 HAD_IIID1 HAD-superf 100.0 5.7E-30 1.2E-34 229.6 13.6 156 65-267 18-190 (195)
7 smart00577 CPDc catalytic doma 99.9 1.5E-24 3.2E-29 186.4 13.1 141 67-214 1-145 (148)
8 KOG2832 TFIIF-interacting CTD 99.9 5.8E-25 1.3E-29 209.2 11.1 159 63-270 184-345 (393)
9 COG5190 FCP1 TFIIF-interacting 99.8 6.2E-21 1.3E-25 185.8 7.5 169 66-268 210-381 (390)
10 COG5190 FCP1 TFIIF-interacting 99.7 2.2E-18 4.7E-23 168.0 5.2 243 66-311 24-350 (390)
11 TIGR01681 HAD-SF-IIIC HAD-supe 98.4 1.2E-07 2.7E-12 79.4 3.2 107 70-196 2-120 (128)
12 TIGR01685 MDP-1 magnesium-depe 98.3 1.2E-06 2.6E-11 77.6 6.9 134 69-208 3-154 (174)
13 TIGR01993 Pyr-5-nucltdase pyri 98.3 3.5E-07 7.6E-12 80.4 2.2 87 115-205 83-179 (184)
14 TIGR01684 viral_ppase viral ph 98.2 4.7E-06 1E-10 79.3 7.5 73 66-169 124-198 (301)
15 PRK13288 pyrophosphatase PpaX; 98.2 6E-07 1.3E-11 80.8 1.1 91 114-206 80-177 (214)
16 TIGR01686 FkbH FkbH-like domai 98.1 2.5E-06 5.4E-11 82.2 5.0 108 67-195 2-114 (320)
17 PLN02575 haloacid dehalogenase 98.1 7.5E-07 1.6E-11 87.9 1.2 89 115-205 215-310 (381)
18 COG4996 Predicted phosphatase 98.1 1.4E-05 3.1E-10 67.4 8.6 131 70-211 2-146 (164)
19 PRK14988 GMP/IMP nucleotidase; 98.1 1.2E-06 2.6E-11 80.2 2.2 90 115-206 92-188 (224)
20 cd01427 HAD_like Haloacid deha 98.1 3.2E-06 6.9E-11 68.3 4.6 101 70-195 1-124 (139)
21 PHA03398 viral phosphatase sup 98.1 1.6E-05 3.5E-10 75.8 9.1 74 66-170 126-201 (303)
22 TIGR01662 HAD-SF-IIIA HAD-supe 98.0 1.5E-05 3.3E-10 66.2 6.9 97 70-193 2-112 (132)
23 TIGR01656 Histidinol-ppas hist 98.0 6.9E-06 1.5E-10 70.1 4.9 106 69-195 1-129 (147)
24 PRK13225 phosphoglycolate phos 98.0 1.7E-06 3.7E-11 81.8 0.4 91 115-207 141-235 (273)
25 TIGR03351 PhnX-like phosphonat 98.0 8.2E-06 1.8E-10 73.5 4.7 91 115-206 86-185 (220)
26 TIGR01261 hisB_Nterm histidino 97.9 2.7E-05 5.8E-10 68.0 6.4 117 69-208 2-144 (161)
27 PHA02530 pseT polynucleotide k 97.9 1.5E-05 3.3E-10 75.4 4.5 122 66-207 156-292 (300)
28 PHA02597 30.2 hypothetical pro 97.8 7.6E-06 1.6E-10 72.6 1.6 95 113-210 71-173 (197)
29 TIGR01664 DNA-3'-Pase DNA 3'-p 97.8 7.2E-05 1.6E-09 65.6 7.6 104 68-194 13-137 (166)
30 PLN02940 riboflavin kinase 97.7 9.8E-06 2.1E-10 80.1 1.0 91 114-206 91-189 (382)
31 TIGR00213 GmhB_yaeD D,D-heptos 97.7 6.7E-05 1.4E-09 65.9 5.9 110 69-205 2-144 (176)
32 PF12689 Acid_PPase: Acid Phos 97.7 3.9E-05 8.4E-10 67.8 4.1 123 68-197 3-137 (169)
33 TIGR01672 AphA HAD superfamily 97.7 5.4E-05 1.2E-09 70.3 4.7 149 50-205 44-205 (237)
34 PRK09552 mtnX 2-hydroxy-3-keto 97.6 6.5E-05 1.4E-09 68.1 4.7 84 114-197 72-173 (219)
35 PRK08942 D,D-heptose 1,7-bisph 97.6 0.00021 4.5E-09 62.9 7.5 102 68-195 3-131 (181)
36 TIGR00338 serB phosphoserine p 97.6 2.4E-05 5.2E-10 70.4 0.8 84 114-198 83-182 (219)
37 PF05152 DUF705: Protein of un 97.5 0.00053 1.1E-08 64.9 8.9 75 66-170 120-195 (297)
38 TIGR01489 DKMTPPase-SF 2,3-dik 97.4 0.00033 7.1E-09 60.9 6.1 50 115-166 71-121 (188)
39 PF13419 HAD_2: Haloacid dehal 97.3 0.00029 6.4E-09 59.5 5.0 83 113-197 74-163 (176)
40 TIGR02253 CTE7 HAD superfamily 97.3 0.00027 5.8E-09 63.4 4.7 80 113-194 91-177 (221)
41 TIGR01668 YqeG_hyp_ppase HAD s 97.2 0.00045 9.7E-09 60.6 4.9 104 66-205 23-130 (170)
42 PLN02770 haloacid dehalogenase 97.1 0.0004 8.8E-09 64.3 3.9 93 114-208 106-205 (248)
43 PRK06769 hypothetical protein; 97.1 0.0008 1.7E-08 59.1 5.5 78 116-195 28-121 (173)
44 PLN03243 haloacid dehalogenase 97.1 0.0004 8.6E-09 65.2 3.7 92 114-207 107-205 (260)
45 TIGR01449 PGP_bact 2-phosphogl 97.1 0.00044 9.5E-09 61.6 3.8 95 114-210 83-184 (213)
46 TIGR01533 lipo_e_P4 5'-nucleot 97.1 0.00094 2E-08 63.1 5.8 120 66-195 73-199 (266)
47 TIGR01428 HAD_type_II 2-haloal 97.1 0.00043 9.3E-09 61.3 3.3 82 114-197 90-178 (198)
48 TIGR01509 HAD-SF-IA-v3 haloaci 97.1 0.00065 1.4E-08 58.6 4.2 80 115-197 84-170 (183)
49 TIGR01454 AHBA_synth_RP 3-amin 97.0 0.00066 1.4E-08 60.5 4.2 93 114-208 73-172 (205)
50 PRK05446 imidazole glycerol-ph 97.0 0.0025 5.4E-08 62.6 8.5 105 67-194 1-131 (354)
51 TIGR02254 YjjG/YfnB HAD superf 97.0 0.00096 2.1E-08 59.7 5.2 79 114-194 95-180 (224)
52 PRK11009 aphA acid phosphatase 97.0 0.0011 2.4E-08 61.6 5.5 137 64-206 59-206 (237)
53 PRK10563 6-phosphogluconate ph 97.0 0.00035 7.6E-09 63.0 2.0 92 114-208 86-183 (221)
54 PLN02954 phosphoserine phospha 96.9 0.00063 1.4E-08 61.3 3.2 50 115-164 83-134 (224)
55 TIGR01663 PNK-3'Pase polynucle 96.9 0.0026 5.6E-08 65.6 7.5 106 66-194 166-294 (526)
56 PRK09449 dUMP phosphatase; Pro 96.9 0.0016 3.4E-08 58.8 5.3 78 115-194 94-178 (224)
57 TIGR01459 HAD-SF-IIA-hyp4 HAD- 96.9 0.0013 2.9E-08 60.6 4.8 95 67-194 7-105 (242)
58 KOG3109 Haloacid dehalogenase- 96.8 0.00091 2E-08 61.1 3.4 82 115-199 99-193 (244)
59 TIGR01422 phosphonatase phosph 96.8 0.0011 2.4E-08 61.1 4.1 92 115-207 98-197 (253)
60 PRK08238 hypothetical protein; 96.7 0.0015 3.2E-08 66.6 4.5 86 116-209 72-166 (479)
61 PRK10826 2-deoxyglucose-6-phos 96.7 0.0011 2.5E-08 59.8 3.1 91 115-207 91-188 (222)
62 PRK10725 fructose-1-P/6-phosph 96.7 0.001 2.2E-08 58.2 2.4 89 115-206 87-181 (188)
63 PF00533 BRCT: BRCA1 C Terminu 96.6 0.0053 1.2E-07 45.6 5.5 45 269-313 2-78 (78)
64 PRK13226 phosphoglycolate phos 96.6 0.0023 5E-08 58.4 4.1 91 114-206 93-190 (229)
65 PRK11587 putative phosphatase; 96.5 0.0029 6.2E-08 57.2 4.4 90 114-206 81-177 (218)
66 PRK13222 phosphoglycolate phos 96.5 0.0041 9E-08 55.7 5.3 83 114-198 91-180 (226)
67 COG1011 Predicted hydrolase (H 96.5 0.0039 8.4E-08 55.9 5.0 81 115-197 98-184 (229)
68 TIGR02009 PGMB-YQAB-SF beta-ph 96.5 0.0015 3.4E-08 56.7 2.1 87 115-205 87-180 (185)
69 TIGR01670 YrbI-phosphatas 3-de 96.4 0.0034 7.5E-08 54.1 4.0 103 69-197 2-105 (154)
70 PRK09456 ?-D-glucose-1-phospha 96.4 0.0018 3.9E-08 57.6 2.3 95 113-208 81-182 (199)
71 PF08645 PNK3P: Polynucleotide 96.2 0.0059 1.3E-07 53.2 4.5 53 69-140 1-54 (159)
72 PRK13223 phosphoglycolate phos 96.2 0.0045 9.7E-08 58.3 3.9 90 115-206 100-196 (272)
73 PLN02779 haloacid dehalogenase 96.1 0.0049 1.1E-07 58.5 3.8 92 115-207 143-242 (286)
74 COG2179 Predicted hydrolase of 96.1 0.013 2.7E-07 51.6 5.9 111 66-211 26-141 (175)
75 TIGR01548 HAD-SF-IA-hyp1 haloa 96.1 0.011 2.5E-07 52.3 5.8 77 116-194 106-188 (197)
76 PRK13478 phosphonoacetaldehyde 96.1 0.0067 1.5E-07 56.6 4.5 92 115-207 100-199 (267)
77 TIGR01549 HAD-SF-IA-v1 haloaci 96.1 0.012 2.7E-07 49.6 5.7 78 114-195 62-145 (154)
78 TIGR01990 bPGM beta-phosphoglu 96.0 0.0042 9.1E-08 53.9 2.6 87 115-205 86-179 (185)
79 TIGR02252 DREG-2 REG-2-like, H 96.0 0.01 2.3E-07 52.5 5.1 77 115-194 104-187 (203)
80 TIGR01691 enolase-ppase 2,3-di 95.9 0.0067 1.5E-07 55.7 3.6 91 114-206 93-191 (220)
81 COG0637 Predicted phosphatase/ 95.9 0.0053 1.2E-07 56.1 2.9 83 114-198 84-173 (221)
82 PF13344 Hydrolase_6: Haloacid 95.9 0.015 3.2E-07 46.8 5.1 46 71-148 1-51 (101)
83 TIGR01491 HAD-SF-IB-PSPlk HAD- 95.9 0.0074 1.6E-07 53.0 3.6 82 114-196 78-175 (201)
84 COG0560 SerB Phosphoserine pho 95.8 0.0081 1.8E-07 54.8 3.6 50 115-165 76-126 (212)
85 PF12738 PTCB-BRCT: twin BRCT 95.8 0.014 3E-07 42.5 4.0 34 275-308 1-63 (63)
86 TIGR02247 HAD-1A3-hyp Epoxide 95.7 0.0042 9E-08 55.5 1.3 92 114-207 92-192 (211)
87 TIGR01493 HAD-SF-IA-v2 Haloaci 95.5 0.0038 8.3E-08 53.9 0.3 73 114-194 88-166 (175)
88 PLN02811 hydrolase 95.5 0.0089 1.9E-07 54.1 2.4 91 114-206 76-179 (220)
89 cd00027 BRCT Breast Cancer Sup 95.4 0.036 7.8E-07 39.3 5.0 20 294-313 52-71 (72)
90 TIGR01689 EcbF-BcbF capsule bi 95.4 0.036 7.8E-07 46.7 5.6 72 70-167 3-87 (126)
91 TIGR03333 salvage_mtnX 2-hydro 95.3 0.033 7.1E-07 50.3 5.6 51 114-164 68-119 (214)
92 smart00292 BRCT breast cancer 95.2 0.038 8.1E-07 40.2 4.7 23 294-316 58-80 (80)
93 PRK06698 bifunctional 5'-methy 95.1 0.02 4.3E-07 57.9 3.9 89 114-206 328-422 (459)
94 PRK09484 3-deoxy-D-manno-octul 95.1 0.015 3.3E-07 51.5 2.7 104 66-195 19-123 (183)
95 PRK00192 mannosyl-3-phosphogly 95.0 0.049 1.1E-06 51.0 6.1 57 68-155 4-61 (273)
96 PLN02919 haloacid dehalogenase 94.9 0.028 6.1E-07 62.7 4.7 81 117-198 162-249 (1057)
97 PRK13582 thrH phosphoserine ph 94.9 0.03 6.5E-07 49.6 4.0 81 114-195 66-155 (205)
98 PF08282 Hydrolase_3: haloacid 94.7 0.058 1.3E-06 48.2 5.3 54 71-155 1-55 (254)
99 TIGR01544 HAD-SF-IE haloacid d 94.7 0.051 1.1E-06 51.7 5.2 83 113-195 118-222 (277)
100 PF06941 NT5C: 5' nucleotidase 94.6 0.011 2.3E-07 52.6 0.3 77 115-204 72-155 (191)
101 TIGR02463 MPGP_rel mannosyl-3- 94.5 0.088 1.9E-06 47.3 6.1 54 71-155 2-56 (221)
102 COG0561 Cof Predicted hydrolas 94.5 0.092 2E-06 48.6 6.4 59 67-156 2-61 (264)
103 TIGR02461 osmo_MPG_phos mannos 94.5 0.082 1.8E-06 48.4 5.8 54 70-155 1-55 (225)
104 TIGR01456 CECR5 HAD-superfamil 94.4 0.077 1.7E-06 51.2 5.8 53 69-153 1-62 (321)
105 PF09419 PGP_phosphatase: Mito 94.1 0.1 2.2E-06 46.1 5.5 100 66-201 39-155 (168)
106 PRK03669 mannosyl-3-phosphogly 94.1 0.13 2.9E-06 48.0 6.6 59 66-155 5-64 (271)
107 TIGR01487 SPP-like sucrose-pho 94.0 0.13 2.8E-06 46.1 6.1 57 69-156 2-59 (215)
108 TIGR00099 Cof-subfamily Cof su 93.8 0.14 3E-06 47.2 6.1 54 71-155 2-56 (256)
109 smart00775 LNS2 LNS2 domain. T 93.7 0.16 3.5E-06 44.0 6.0 62 70-151 1-66 (157)
110 PTZ00445 p36-lilke protein; Pr 93.7 0.034 7.4E-07 50.9 1.7 128 66-209 41-203 (219)
111 TIGR01488 HAD-SF-IB Haloacid D 93.7 0.13 2.8E-06 44.1 5.3 50 115-165 72-122 (177)
112 PRK10513 sugar phosphate phosp 93.6 0.18 3.9E-06 46.7 6.4 57 68-155 3-60 (270)
113 COG0241 HisB Histidinol phosph 93.5 0.12 2.5E-06 46.3 4.8 126 68-217 5-153 (181)
114 PRK10444 UMP phosphatase; Prov 93.4 0.13 2.9E-06 47.9 5.2 51 70-152 3-54 (248)
115 PRK10530 pyridoxal phosphate ( 93.2 0.27 5.8E-06 45.4 6.8 57 69-156 4-61 (272)
116 PRK01158 phosphoglycolate phos 93.1 0.24 5.2E-06 44.5 6.4 57 69-156 4-61 (230)
117 TIGR01484 HAD-SF-IIB HAD-super 93.0 0.21 4.5E-06 44.2 5.6 54 70-153 1-55 (204)
118 TIGR01486 HAD-SF-IIB-MPGP mann 93.0 0.21 4.6E-06 46.1 5.8 54 71-155 2-56 (256)
119 TIGR02137 HSK-PSP phosphoserin 92.9 0.19 4.1E-06 45.4 5.3 52 115-167 67-118 (203)
120 TIGR01458 HAD-SF-IIA-hyp3 HAD- 92.6 0.15 3.3E-06 47.5 4.4 46 70-143 3-49 (257)
121 COG3882 FkbH Predicted enzyme 92.5 0.25 5.5E-06 50.2 5.9 123 66-211 220-355 (574)
122 PRK15126 thiamin pyrimidine py 92.4 0.33 7.2E-06 45.1 6.3 57 69-156 3-60 (272)
123 PLN02645 phosphoglycolate phos 92.4 0.2 4.3E-06 48.1 4.9 53 66-150 26-79 (311)
124 COG0546 Gph Predicted phosphat 92.3 0.25 5.4E-06 44.8 5.3 81 115-197 88-175 (220)
125 PRK10976 putative hydrolase; P 92.3 0.34 7.3E-06 44.8 6.2 57 69-156 3-60 (266)
126 TIGR01452 PGP_euk phosphoglyco 92.2 0.21 4.5E-06 47.0 4.8 41 69-141 3-44 (279)
127 TIGR01482 SPP-subfamily Sucros 91.9 0.31 6.8E-06 43.6 5.5 52 71-153 1-53 (225)
128 PRK10748 flavin mononucleotide 91.8 0.15 3.3E-06 46.7 3.3 85 115-207 112-204 (238)
129 PRK10187 trehalose-6-phosphate 91.8 0.3 6.5E-06 45.9 5.3 61 66-152 12-74 (266)
130 TIGR01675 plant-AP plant acid 91.5 0.34 7.5E-06 44.9 5.3 125 66-197 75-209 (229)
131 PF06888 Put_Phosphatase: Puta 91.4 0.54 1.2E-05 43.7 6.4 50 114-165 69-121 (234)
132 TIGR01485 SPP_plant-cyano sucr 91.3 0.37 8E-06 44.4 5.3 59 68-154 1-60 (249)
133 COG2503 Predicted secreted aci 91.3 0.21 4.5E-06 46.7 3.5 72 66-143 77-150 (274)
134 TIGR01457 HAD-SF-IIA-hyp2 HAD- 91.3 0.35 7.6E-06 44.9 5.1 40 70-141 3-43 (249)
135 COG0647 NagD Predicted sugar p 90.8 0.34 7.5E-06 45.9 4.6 57 67-155 7-68 (269)
136 PF11019 DUF2608: Protein of u 90.5 0.71 1.5E-05 43.3 6.4 146 67-213 19-211 (252)
137 PF03767 Acid_phosphat_B: HAD 89.7 0.32 7E-06 44.8 3.4 80 66-153 70-153 (229)
138 TIGR00685 T6PP trehalose-phosp 89.6 0.26 5.7E-06 45.4 2.7 53 66-144 1-53 (244)
139 PRK12702 mannosyl-3-phosphogly 89.5 0.93 2E-05 43.6 6.4 56 69-155 2-58 (302)
140 PTZ00174 phosphomannomutase; P 89.3 0.79 1.7E-05 42.3 5.7 16 68-83 5-20 (247)
141 TIGR01460 HAD-SF-IIA Haloacid 88.6 0.49 1.1E-05 43.5 3.8 49 71-151 1-54 (236)
142 PRK14502 bifunctional mannosyl 88.6 1.2 2.5E-05 47.6 6.9 59 66-155 414-473 (694)
143 PLN02423 phosphomannomutase 88.2 0.95 2.1E-05 41.9 5.4 54 67-154 6-59 (245)
144 KOG3120 Predicted haloacid deh 88.0 0.77 1.7E-05 42.4 4.5 104 62-167 7-135 (256)
145 TIGR01490 HAD-SF-IB-hyp1 HAD-s 87.2 1.2 2.5E-05 39.2 5.2 49 115-164 86-135 (202)
146 TIGR01548 HAD-SF-IA-hyp1 haloa 86.5 0.35 7.5E-06 42.7 1.4 15 70-84 2-16 (197)
147 COG4359 Uncharacterized conser 86.4 1.5 3.1E-05 39.6 5.2 42 114-155 71-113 (220)
148 COG4502 5'(3')-deoxyribonucleo 85.9 0.6 1.3E-05 40.3 2.5 77 114-208 66-151 (180)
149 PLN02887 hydrolase family prot 85.6 1.8 3.9E-05 45.5 6.3 59 66-155 306-365 (580)
150 TIGR02244 HAD-IG-Ncltidse HAD 85.4 1.1 2.4E-05 44.0 4.4 53 112-165 180-240 (343)
151 PLN02151 trehalose-phosphatase 85.3 1.5 3.2E-05 43.3 5.2 59 66-150 96-154 (354)
152 PRK10725 fructose-1-P/6-phosph 85.0 0.47 1E-05 41.2 1.5 17 68-84 5-21 (188)
153 PLN03017 trehalose-phosphatase 84.5 1.7 3.6E-05 43.1 5.2 59 66-150 109-167 (366)
154 TIGR02726 phenyl_P_delta pheny 83.1 2.3 4.9E-05 37.4 5.0 117 68-210 7-124 (169)
155 PLN02580 trehalose-phosphatase 83.1 2 4.2E-05 42.9 5.1 59 66-150 117-175 (384)
156 PRK11587 putative phosphatase; 82.6 0.66 1.4E-05 41.7 1.5 16 69-84 4-19 (218)
157 PF00702 Hydrolase: haloacid d 81.4 1.8 4E-05 37.7 3.8 78 112-194 123-205 (215)
158 TIGR01454 AHBA_synth_RP 3-amin 81.1 0.54 1.2E-05 41.6 0.3 14 71-84 1-14 (205)
159 TIGR02253 CTE7 HAD superfamily 80.7 0.86 1.9E-05 40.6 1.5 16 69-84 3-18 (221)
160 TIGR02252 DREG-2 REG-2-like, H 80.3 1 2.2E-05 39.7 1.8 15 70-84 2-16 (203)
161 TIGR02009 PGMB-YQAB-SF beta-ph 79.9 0.86 1.9E-05 39.3 1.2 16 69-84 2-17 (185)
162 PRK13226 phosphoglycolate phos 79.7 0.85 1.8E-05 41.4 1.1 18 67-84 11-28 (229)
163 TIGR01549 HAD-SF-IA-v1 haloaci 79.7 0.77 1.7E-05 38.5 0.8 14 70-83 1-14 (154)
164 PRK13223 phosphoglycolate phos 79.1 0.98 2.1E-05 42.4 1.4 17 68-84 13-29 (272)
165 TIGR01990 bPGM beta-phosphoglu 79.0 0.89 1.9E-05 39.2 1.0 15 70-84 1-15 (185)
166 PLN02770 haloacid dehalogenase 78.9 0.93 2E-05 41.8 1.1 16 69-84 23-38 (248)
167 TIGR01680 Veg_Stor_Prot vegeta 78.8 6.5 0.00014 37.5 6.8 127 66-198 99-236 (275)
168 TIGR01449 PGP_bact 2-phosphogl 78.3 0.76 1.7E-05 40.6 0.3 14 71-84 1-14 (213)
169 TIGR01493 HAD-SF-IA-v2 Haloaci 78.2 0.97 2.1E-05 38.7 1.0 14 71-84 2-15 (175)
170 COG1877 OtsB Trehalose-6-phosp 78.1 4.5 9.8E-05 38.4 5.5 59 66-150 16-76 (266)
171 TIGR01511 ATPase-IB1_Cu copper 77.8 5.2 0.00011 41.7 6.4 74 114-195 403-477 (562)
172 COG0546 Gph Predicted phosphat 77.8 1.2 2.7E-05 40.2 1.6 18 68-85 4-21 (220)
173 PRK11590 hypothetical protein; 77.3 1.3 2.9E-05 39.8 1.6 39 115-153 94-134 (211)
174 PRK13478 phosphonoacetaldehyde 77.2 1.3 2.9E-05 41.1 1.6 15 69-83 5-19 (267)
175 PRK10748 flavin mononucleotide 76.8 1.2 2.6E-05 40.8 1.2 15 69-83 11-25 (238)
176 PLN03243 haloacid dehalogenase 76.6 1.4 3.1E-05 41.2 1.7 18 66-83 22-39 (260)
177 COG3769 Predicted hydrolase (H 76.5 7.4 0.00016 36.2 6.2 59 67-157 6-65 (274)
178 TIGR01422 phosphonatase phosph 76.1 1.6 3.5E-05 40.1 1.8 15 69-83 3-17 (253)
179 PLN02779 haloacid dehalogenase 74.9 1.6 3.4E-05 41.4 1.5 16 68-83 40-55 (286)
180 TIGR01428 HAD_type_II 2-haloal 74.4 1.5 3.2E-05 38.5 1.1 15 70-84 3-17 (198)
181 PF13419 HAD_2: Haloacid dehal 73.8 1.7 3.6E-05 36.3 1.2 14 71-84 1-14 (176)
182 PRK14501 putative bifunctional 73.6 5.4 0.00012 42.9 5.3 59 66-150 490-550 (726)
183 TIGR02254 YjjG/YfnB HAD superf 73.5 1.7 3.7E-05 38.5 1.3 16 69-84 2-17 (224)
184 TIGR01509 HAD-SF-IA-v3 haloaci 73.4 1.6 3.5E-05 37.2 1.0 15 70-84 1-15 (183)
185 PRK13222 phosphoglycolate phos 73.3 1.6 3.6E-05 38.8 1.1 16 69-84 7-22 (226)
186 PRK11133 serB phosphoserine ph 72.7 4.7 0.0001 39.1 4.2 83 114-197 179-277 (322)
187 COG0637 Predicted phosphatase/ 72.6 1.7 3.6E-05 39.6 1.0 17 69-85 3-19 (221)
188 PRK10563 6-phosphogluconate ph 72.4 1.8 3.9E-05 38.7 1.2 17 68-84 4-20 (221)
189 TIGR01491 HAD-SF-IB-PSPlk HAD- 71.8 2.2 4.8E-05 37.1 1.6 15 69-83 5-19 (201)
190 PRK10826 2-deoxyglucose-6-phos 71.3 2.1 4.5E-05 38.4 1.3 16 68-83 7-22 (222)
191 TIGR02247 HAD-1A3-hyp Epoxide 71.2 2.3 5.1E-05 37.7 1.6 14 70-83 4-17 (211)
192 PRK11590 hypothetical protein; 71.1 6.2 0.00013 35.4 4.4 17 67-83 5-21 (211)
193 KOG3226 DNA repair protein [Re 70.4 3.8 8.2E-05 40.6 2.9 55 271-325 316-400 (508)
194 KOG2914 Predicted haloacid-hal 69.8 4.1 8.8E-05 37.6 2.9 98 112-211 88-199 (222)
195 PRK09449 dUMP phosphatase; Pro 68.2 2.5 5.4E-05 37.8 1.1 14 69-82 4-17 (224)
196 TIGR01545 YfhB_g-proteo haloac 67.5 7.5 0.00016 35.1 4.1 37 115-151 93-131 (210)
197 PRK06698 bifunctional 5'-methy 67.0 2.5 5.4E-05 42.8 0.9 16 69-84 242-257 (459)
198 PF05822 UMPH-1: Pyrimidine 5' 66.1 10 0.00023 35.5 4.8 41 112-152 86-127 (246)
199 PF05116 S6PP: Sucrose-6F-phos 66.0 7.9 0.00017 35.9 4.1 55 67-152 1-56 (247)
200 PF08235 LNS2: LNS2 (Lipin/Ned 65.4 14 0.00031 32.3 5.2 63 70-152 1-64 (157)
201 PF12710 HAD: haloacid dehalog 63.2 7.5 0.00016 33.4 3.2 39 117-155 86-129 (192)
202 KOG3085 Predicted hydrolase (H 63.0 5.3 0.00012 37.2 2.3 77 118-196 115-197 (237)
203 TIGR02471 sucr_syn_bact_C sucr 62.7 10 0.00022 34.4 4.0 12 71-82 2-13 (236)
204 PRK13582 thrH phosphoserine ph 61.7 4.3 9.4E-05 35.6 1.4 11 70-80 3-13 (205)
205 PLN02382 probable sucrose-phos 61.5 4.5 9.7E-05 40.6 1.6 18 66-83 7-24 (413)
206 TIGR01525 ATPase-IB_hvy heavy 61.2 12 0.00025 39.0 4.7 77 112-195 380-458 (556)
207 TIGR01512 ATPase-IB2_Cd heavy 60.7 10 0.00022 39.2 4.2 77 112-195 358-436 (536)
208 PLN03123 poly [ADP-ribose] pol 59.1 14 0.00031 41.2 5.0 55 270-324 391-478 (981)
209 TIGR02137 HSK-PSP phosphoserin 56.7 5.6 0.00012 35.8 1.2 13 70-82 3-15 (203)
210 PRK09456 ?-D-glucose-1-phospha 53.9 7 0.00015 34.4 1.4 14 70-83 2-15 (199)
211 COG1011 Predicted hydrolase (H 51.8 8.7 0.00019 34.0 1.7 17 68-84 4-20 (229)
212 TIGR01545 YfhB_g-proteo haloac 50.0 8.8 0.00019 34.7 1.4 18 68-85 5-22 (210)
213 PLN03122 Poly [ADP-ribose] pol 49.2 26 0.00056 38.5 4.9 56 270-325 187-276 (815)
214 PF08271 TF_Zn_Ribbon: TFIIB z 49.1 6.7 0.00014 26.4 0.4 33 4-48 1-33 (43)
215 PF02358 Trehalose_PPase: Treh 49.0 18 0.00039 32.9 3.3 50 72-147 1-52 (235)
216 TIGR01488 HAD-SF-IB Haloacid D 46.3 9.4 0.0002 32.4 0.9 14 71-84 2-15 (177)
217 PRK11133 serB phosphoserine ph 45.4 12 0.00027 36.2 1.7 17 66-82 108-124 (322)
218 PLN02205 alpha,alpha-trehalose 44.8 19 0.0004 39.8 3.1 57 66-150 594-652 (854)
219 PF12710 HAD: haloacid dehalog 44.4 11 0.00025 32.2 1.2 13 71-83 1-13 (192)
220 TIGR01490 HAD-SF-IB-hyp1 HAD-s 44.2 11 0.00023 33.0 1.0 13 71-83 2-14 (202)
221 PLN03063 alpha,alpha-trehalose 43.7 43 0.00093 36.7 5.7 62 66-150 505-568 (797)
222 KOG1615 Phosphoserine phosphat 41.9 54 0.0012 30.0 5.0 50 115-164 87-138 (227)
223 PF05864 Chordopox_RPO7: Chord 37.7 11 0.00024 27.4 0.1 17 32-48 2-18 (63)
224 PF13240 zinc_ribbon_2: zinc-r 36.8 18 0.00039 21.2 0.9 19 26-44 4-23 (23)
225 PLN03064 alpha,alpha-trehalose 36.7 69 0.0015 35.8 5.9 70 66-152 589-660 (934)
226 PLN02919 haloacid dehalogenase 36.3 18 0.0004 40.7 1.5 20 66-85 73-92 (1057)
227 KOG2134 Polynucleotide kinase 35.2 56 0.0012 32.8 4.5 57 66-141 73-130 (422)
228 KOG0966 ATP-dependent DNA liga 34.9 21 0.00046 38.7 1.6 26 300-325 856-881 (881)
229 PF13701 DDE_Tnp_1_4: Transpos 33.8 61 0.0013 33.0 4.7 91 66-159 137-244 (448)
230 PHA03082 DNA-dependent RNA pol 33.8 14 0.0003 26.9 0.0 17 32-48 2-18 (63)
231 PF10235 Cript: Microtubule-as 33.0 18 0.00038 28.8 0.5 23 26-48 61-83 (90)
232 PF13248 zf-ribbon_3: zinc-rib 32.9 23 0.00049 21.2 0.9 19 26-44 7-26 (26)
233 PF00702 Hydrolase: haloacid d 31.9 28 0.0006 30.2 1.6 14 70-83 3-16 (215)
234 PF05761 5_nucleotid: 5' nucle 31.4 87 0.0019 32.0 5.3 49 112-160 179-236 (448)
235 TIGR01658 EYA-cons_domain eyes 29.7 23 0.0005 33.4 0.8 14 69-82 3-16 (274)
236 KOG4549 Magnesium-dependent ph 29.5 2.8E+02 0.0061 23.7 7.1 78 67-153 4-83 (144)
237 cd02514 GT13_GLCNAC-TI GT13_GL 29.2 42 0.00092 32.9 2.5 40 113-152 6-52 (334)
238 KOG3799 Rab3 effector RIM1 and 29.0 24 0.00053 30.1 0.7 35 5-48 67-103 (169)
239 PLN02177 glycerol-3-phosphate 28.4 30 0.00064 35.8 1.4 36 117-155 111-147 (497)
240 PF03604 DNA_RNApol_7kD: DNA d 28.2 25 0.00054 22.4 0.5 11 4-14 1-11 (32)
241 PRK10671 copA copper exporting 27.9 78 0.0017 34.7 4.5 76 115-197 649-725 (834)
242 KOG2043 Signaling protein SWIF 27.7 36 0.00079 37.7 2.0 30 296-325 708-737 (896)
243 COG4030 Uncharacterized protei 26.6 82 0.0018 29.7 3.7 40 114-153 81-120 (315)
244 TIGR00570 cdk7 CDK-activating 26.3 43 0.00093 32.5 2.0 46 1-48 1-57 (309)
245 cd01615 CIDE_N CIDE_N domain, 25.0 84 0.0018 24.3 3.0 18 66-83 38-55 (78)
246 PF02017 CIDE-N: CIDE-N domain 23.9 83 0.0018 24.3 2.8 17 67-83 39-55 (78)
247 PRK11033 zntA zinc/cadmium/mer 23.2 1.1E+02 0.0023 33.3 4.5 74 112-194 564-638 (741)
248 PRK09194 prolyl-tRNA synthetas 21.9 2.7E+02 0.0059 29.1 7.1 57 132-194 469-532 (565)
249 cd02974 AhpF_NTD_N Alkyl hydro 21.3 92 0.002 24.6 2.7 35 117-152 6-40 (94)
250 KOG0966 ATP-dependent DNA liga 21.2 67 0.0015 35.1 2.4 23 294-316 689-711 (881)
251 KOG1785 Tyrosine kinase negati 20.4 40 0.00087 33.9 0.5 30 5-45 371-400 (563)
252 PLN02499 glycerol-3-phosphate 20.1 61 0.0013 33.5 1.8 23 133-155 110-133 (498)
No 1
>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=100.00 E-value=1.3e-59 Score=476.80 Aligned_cols=301 Identities=37% Similarity=0.563 Sum_probs=263.6
Q ss_pred CCCCccccccccccccccccccccCcceeeeccceecCccc---------------cCceEEEEeCCCceeeecccCCCC
Q 040058 25 LSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQE---------------ERKLQLVLNLDHTLLHCRNIKSLS 89 (326)
Q Consensus 25 ~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~~s~~~---------------~~Kl~LVLDLD~TLIhs~~~~~~~ 89 (326)
+.|.|+++++|||+.||++|+...+..+.|+..+++++..+ .++|.||+|||+||+|+...+.+.
T Consensus 88 ~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~ 167 (635)
T KOG0323|consen 88 SCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLS 167 (635)
T ss_pred CCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhh
Confidence 89999999999999999999999888889998888888765 566799999999999999999998
Q ss_pred ccchhhhccccc--cccceeeccc-----eEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccce
Q 040058 90 SGEKYLKKQIHS--FIGSLFQMAN-----DKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSR 162 (326)
Q Consensus 90 ~~e~~l~~~~~~--~~~~l~~~~~-----~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~R 162 (326)
+++.++..+..+ ...++|.++. +||||+|||+.+||++++++|||||||||+|.||..|+++|||+|.||++|
T Consensus 168 e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dR 247 (635)
T KOG0323|consen 168 ETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDR 247 (635)
T ss_pred hhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccce
Confidence 999888877664 2356776652 899999999999999999999999999999999999999999999999999
Q ss_pred EEeecCCCCCccccCCC-CCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccc-cCC--------------------
Q 040058 163 IIAREDFNGKDRKNPDL-VRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKE-LNG-------------------- 220 (326)
Q Consensus 163 i~sRd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~-~~~-------------------- 220 (326)
|+||++....-.+||.. ++++.+||||||||.+||+.++.|+|+|.||.||.+.| +|.
T Consensus 248 Iisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k 327 (635)
T KOG0323|consen 248 IISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFK 327 (635)
T ss_pred EEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhccccccccc
Confidence 99999987766667765 46899999999999999998877999999999999998 553
Q ss_pred ------------------------------------------------------CCCCccccccCCCccHHHHHHHHHHH
Q 040058 221 ------------------------------------------------------DHKSYSETLTDESENEEALANVLRVL 246 (326)
Q Consensus 221 ------------------------------------------------------~~~s~~e~~~d~~~~D~~L~~l~~~L 246 (326)
...|+.+...|+.+.|++|.+++++|
T Consensus 328 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl 407 (635)
T KOG0323|consen 328 EFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVL 407 (635)
T ss_pred ccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhh
Confidence 34566667788889999999999999
Q ss_pred HHHHHHhcCC--------CCCcHHHHHHHHhccC-CCcEEEEcCccch---------HHHHHHH----------------
Q 040058 247 KTIHRLFFDS--------VCGDVRTYLPKVRSEF-SRDVLYFSAIFRD---------CLWAEQE---------------- 292 (326)
Q Consensus 247 ~~ih~~ff~~--------~~~DVr~il~~~r~~v-~g~~ivfs~~~p~---------~~~~~ae---------------- 292 (326)
+.||..||.. ..+|||.+|+++|.++ +||.++|||++|. -.|..++
T Consensus 408 ~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i 487 (635)
T KOG0323|consen 408 KPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLI 487 (635)
T ss_pred cccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHH
Confidence 9999999995 4589999999999999 9999999999998 2354433
Q ss_pred --------HHHhhh-CCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058 293 --------EKFLVQ-EKKFLVHPRWIDAYYFLWRRRPEDDYL 325 (326)
Q Consensus 293 --------a~~a~~-~~~~vV~p~Wl~~~~~~w~r~~E~~f~ 325 (326)
++.|.. +.++||++.||+.|...|.++.|..|+
T Consensus 488 ~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~ 529 (635)
T KOG0323|consen 488 AANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP 529 (635)
T ss_pred hhccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence 122333 238999999999999999999999885
No 2
>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain. This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=3.3e-38 Score=274.21 Aligned_cols=148 Identities=43% Similarity=0.636 Sum_probs=125.7
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccc-cccceeecc--c-eEEEEeCccHHHHHHHhhcCceEEEEcCCc
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHS-FIGSLFQMA--N-DKLVKLRPFVRTFLEQASSLVDIYLCTMST 141 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~-~~~~l~~~~--~-~~~vklRPgl~eFL~~ls~~yEl~IyT~g~ 141 (326)
++|++||||||||||||+..+..+.++.+....... ...+++.+. . .+++++|||+.+||+++++.||++|||+++
T Consensus 4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~~ 83 (156)
T TIGR02250 4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMGT 83 (156)
T ss_pred CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCCc
Confidence 689999999999999999887655443321111110 012334433 2 789999999999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccccceEEeecCCCCCccccCC-CCCCCCCcEEEEeCCchhhccCCCCeEEeCccccc
Q 040058 142 RCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPD-LVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213 (326)
Q Consensus 142 ~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f 213 (326)
+.||++|++.|||.+.+|++|+++|++|.+.+.|||+ .+++++++||||||++++|..|++|+|+|+||.||
T Consensus 84 ~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~~f 156 (156)
T TIGR02250 84 RAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156 (156)
T ss_pred HHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcccC
Confidence 9999999999999999998899999999999999995 56889999999999999999999999999999998
No 3
>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=100.00 E-value=7.7e-36 Score=277.24 Aligned_cols=168 Identities=25% Similarity=0.403 Sum_probs=144.1
Q ss_pred cCceEEEEeCCCceeeecc-cCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRN-IKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~-~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~ 143 (326)
.+|++|||||||||+||+. .+...+. .+..++ .+. ....+||.+|||+++||+.++++||++|||++.+.
T Consensus 87 ~~kk~lVLDLDeTLvHss~~~~~~~~~--d~~~~v------~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~ 158 (262)
T KOG1605|consen 87 VGRKTLVLDLDETLVHSSLNLKPIVNA--DFTVPV------EIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEV 158 (262)
T ss_pred CCCceEEEeCCCcccccccccCCCCCc--ceeeee------eeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHH
Confidence 8999999999999999994 2211111 111111 111 22389999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCC
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNG 220 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~ 220 (326)
||.+|++.|||.+++|.+|+| |++|. +.++|||..+++++++||||||+|.++..|++|+|+|++|.
T Consensus 159 Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~--------- 228 (262)
T KOG1605|consen 159 YADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWF--------- 228 (262)
T ss_pred HHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccc---------
Confidence 999999999998899999998 99997 47999999999999999999999999999999999999998
Q ss_pred CCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 040058 221 DHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKV 268 (326)
Q Consensus 221 ~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~ 268 (326)
.+..|.+|++|+++|+.+.. ..|||.+++..
T Consensus 229 -----------~d~~D~eLL~LlpfLe~L~~------~~Dvr~~l~~~ 259 (262)
T KOG1605|consen 229 -----------DDPTDTELLKLLPFLEALAF------VDDVRPILARR 259 (262)
T ss_pred -----------cCCChHHHHHHHHHHHHhcc------cccHHHHHHHh
Confidence 36779999999999999985 39999999864
No 4
>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.
Probab=100.00 E-value=1.2e-34 Score=253.17 Aligned_cols=156 Identities=28% Similarity=0.370 Sum_probs=130.8
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE 146 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~ 146 (326)
|++||||||||||||+..+....+ .+...+ .+.. ...+||++|||+.|||+++++.||++|||+|++.||+
T Consensus 1 k~~lvlDLDeTLi~~~~~~~~~~~--~~~~~~------~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~ 72 (162)
T TIGR02251 1 KKTLVLDLDETLVHSTFKMPKVDA--DFKVPV------LIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYAD 72 (162)
T ss_pred CcEEEEcCCCCcCCCCCCCCCCCC--ceEEEE------EecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHH
Confidence 689999999999999866521111 110000 0111 1289999999999999999999999999999999999
Q ss_pred HHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCCC
Q 040058 147 AAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHK 223 (326)
Q Consensus 147 ~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~~ 223 (326)
+|++.|||.+.+|.++++ |++|. +.+.|+|+.++++++++|||||++..|..+++|+|+|.+|.
T Consensus 73 ~il~~ldp~~~~f~~~l~-r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~------------ 139 (162)
T TIGR02251 73 PVLDILDRGGKVISRRLY-RESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF------------ 139 (162)
T ss_pred HHHHHHCcCCCEEeEEEE-ccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC------------
Confidence 999999999889987555 99985 45899999999999999999999999999999999999998
Q ss_pred CccccccCCCccHHHHHHHHHHHHHHHHH
Q 040058 224 SYSETLTDESENEEALANVLRVLKTIHRL 252 (326)
Q Consensus 224 s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ 252 (326)
.+.+|.+|..|+++|+.|...
T Consensus 140 --------~~~~D~~L~~l~~~L~~l~~~ 160 (162)
T TIGR02251 140 --------GDPNDTELLNLIPFLEGLRFE 160 (162)
T ss_pred --------CCCCHHHHHHHHHHHHHHhcc
Confidence 267899999999999999863
No 5
>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear. It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....
Probab=100.00 E-value=2.2e-33 Score=242.60 Aligned_cols=155 Identities=28% Similarity=0.415 Sum_probs=116.5
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v 148 (326)
++|||||||||||+...+..+ .. . ........+++++|||+++||+++++.|||+|||+|++.||++|
T Consensus 1 k~LVlDLD~TLv~~~~~~~~~-~~--~---------~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v 68 (159)
T PF03031_consen 1 KTLVLDLDGTLVHSSSKSPLP-YD--F---------KIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPV 68 (159)
T ss_dssp EEEEEE-CTTTEEEESSTCTT--S--E---------EEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHH
T ss_pred CEEEEeCCCcEEEEeecCCCC-cc--c---------ceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHH
Confidence 689999999999999765321 00 0 00011127899999999999999999999999999999999999
Q ss_pred HHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCCCCc
Q 040058 149 VKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSY 225 (326)
Q Consensus 149 ~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~~s~ 225 (326)
++.|||++.+|.+ +++|++|.. .+.|||++++++++++|||||++.+|..+++|+|+|++|.
T Consensus 69 ~~~ldp~~~~~~~-~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~-------------- 133 (159)
T PF03031_consen 69 LDALDPNGKLFSR-RLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF-------------- 133 (159)
T ss_dssp HHHHTTTTSSEEE-EEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S--------------
T ss_pred HHhhhhhcccccc-ccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc--------------
Confidence 9999999899975 556998852 3579999999999999999999999998899999999997
Q ss_pred cccccCCC-ccHHHHHHHHHHHHHHHHHhcCCCCCcHH
Q 040058 226 SETLTDES-ENEEALANVLRVLKTIHRLFFDSVCGDVR 262 (326)
Q Consensus 226 ~e~~~d~~-~~D~~L~~l~~~L~~ih~~ff~~~~~DVr 262 (326)
.+ .+|++|..|+++|+.+++. +|||
T Consensus 134 ------~~~~~D~~L~~l~~~L~~l~~~------~Dvr 159 (159)
T PF03031_consen 134 ------GDTPNDRELLRLLPFLEELAKE------DDVR 159 (159)
T ss_dssp ------SCHTT--HHHHHHHHHHHHHTH------S-CH
T ss_pred ------CCCcchhHHHHHHHHHHHhCcc------cCCC
Confidence 13 6799999999999999965 8887
No 6
>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245. This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.
Probab=99.97 E-value=5.7e-30 Score=229.60 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=125.5
Q ss_pred ccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHH
Q 040058 65 EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCY 144 (326)
Q Consensus 65 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~Y 144 (326)
..+|++|||||||||||+..... ..++.+|||+++||+.+++.|||+|||++++.|
T Consensus 18 ~~~kklLVLDLDeTLvh~~~~~~------------------------~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~y 73 (195)
T TIGR02245 18 REGKKLLVLDIDYTLFDHRSPAE------------------------TGEELMRPYLHEFLTSAYEDYDIVIWSATSMKW 73 (195)
T ss_pred CCCCcEEEEeCCCceEcccccCC------------------------CceEEeCCCHHHHHHHHHhCCEEEEEecCCHHH
Confidence 37889999999999999853210 235789999999999999999999999999999
Q ss_pred HHHHHHHhCCCCc-cccceEEeecCCC---------CC-ccccCCCC----C--CCCCcEEEEeCCchhhccCCCCeEEe
Q 040058 145 AEAAVKLLDLDSK-YFSSRIIAREDFN---------GK-DRKNPDLV----R--GQERGIVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 145 A~~v~~~LDP~~~-~F~~Ri~sRd~~~---------~~-~~KdL~~l----~--~~~~~vvIvDD~~~vw~~~~~N~I~I 207 (326)
|+++++.|++.+. -|.-+.+ ++.|. +. ++|+|+.+ + .+++++|||||++.++..||+|+|+|
T Consensus 74 a~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I 152 (195)
T TIGR02245 74 IEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKI 152 (195)
T ss_pred HHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCcccc
Confidence 9999999976432 2332232 55552 12 58999976 3 37899999999999999999999999
Q ss_pred CccccccccccCCCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 040058 208 GKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPK 267 (326)
Q Consensus 208 ~~y~~f~~~~~~~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~ 267 (326)
+||..-. .++.+|.+|..|+++|+.|+. ..|||+++..
T Consensus 153 ~~f~~~~----------------~~~~~D~eL~~L~~yL~~la~------~~Dvr~~~~~ 190 (195)
T TIGR02245 153 RPFKKAH----------------ANRGTDQELLKLTQYLKTIAE------LEDFSSLDHK 190 (195)
T ss_pred CCccccC----------------CCCcccHHHHHHHHHHHHHhc------Ccccchhhhc
Confidence 9997110 025789999999999999997 4999999874
No 7
>smart00577 CPDc catalytic domain of ctd-like phosphatases.
Probab=99.92 E-value=1.5e-24 Score=186.35 Aligned_cols=141 Identities=29% Similarity=0.374 Sum_probs=112.7
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA 145 (326)
||++|||||||||||+...+.. ++.+ .. +.....+.. +..+++++|||+.+||+++++.|++.|+|++.+.||
T Consensus 1 ~k~~lvldld~tl~~~~~~~~~-~~~~----~~-~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~ 74 (148)
T smart00577 1 KKKTLVLDLDETLVHSTHRSFK-EWTN----RD-FIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYA 74 (148)
T ss_pred CCcEEEEeCCCCeECCCCCcCC-CCCc----cc-eEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHH
Confidence 6999999999999999753321 1110 00 000000111 128899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcccccc
Q 040058 146 EAAVKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFR 214 (326)
Q Consensus 146 ~~v~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~ 214 (326)
+.+++.+|+.+.+|. +|++++++.. .+.|+|++++.+++.+|+|||++..|..++.|+|.|+||.++.
T Consensus 75 ~~il~~l~~~~~~f~-~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~ 145 (148)
T smart00577 75 DPVLDLLDPKKYFGY-RRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDP 145 (148)
T ss_pred HHHHHHhCcCCCEee-eEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCC
Confidence 999999999754454 7999998863 4889999999999999999999999999999999999999543
No 8
>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]
Probab=99.92 E-value=5.8e-25 Score=209.19 Aligned_cols=159 Identities=21% Similarity=0.284 Sum_probs=143.8
Q ss_pred ccccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcH
Q 040058 63 EQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTR 142 (326)
Q Consensus 63 ~~~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~ 142 (326)
+.++.++||||||.++|||..+.-. .++.+++|||++.||..++++|||+|||....
T Consensus 184 Py~Qp~yTLVleledvLVhpdws~~-----------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~g 240 (393)
T KOG2832|consen 184 PYEQPPYTLVLELEDVLVHPDWSYK-----------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQG 240 (393)
T ss_pred cccCCCceEEEEeeeeEeccchhhh-----------------------cCceeccCchHHHHHHhhcccceEEEEecCCc
Confidence 4449999999999999999975421 14467999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccC
Q 040058 143 CYAEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELN 219 (326)
Q Consensus 143 ~YA~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~ 219 (326)
.||.++++.|||.| ++++|++ |+.+. +.++|||+.|+||+++||+||-++.....||+|.|.++||.
T Consensus 241 mt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~-------- 310 (393)
T KOG2832|consen 241 MTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWS-------- 310 (393)
T ss_pred cchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCC--------
Confidence 99999999999995 6788998 88876 46899999999999999999999999999999999999998
Q ss_pred CCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHhc
Q 040058 220 GDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRS 270 (326)
Q Consensus 220 ~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~r~ 270 (326)
.+++|+.|.+|+++|+.||+. +..|||++|+.+.+
T Consensus 311 ------------Gn~dDt~L~dL~~FL~~ia~~----~~eDvR~vL~~y~~ 345 (393)
T KOG2832|consen 311 ------------GNDDDTSLFDLLAFLEYIAQQ----QVEDVRPVLQSYSQ 345 (393)
T ss_pred ------------CCcccchhhhHHHHHHHHHHc----cHHHHHHHHHHhcc
Confidence 368899999999999999987 77999999999876
No 9
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.83 E-value=6.2e-21 Score=185.81 Aligned_cols=169 Identities=27% Similarity=0.388 Sum_probs=141.9
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA 145 (326)
..+.+|++|||+||+||..... .. ..++.. . ..-.....+||..||++.+||..++++|++++||++.+.||
T Consensus 210 ~~~k~L~l~lde~l~~S~~~~~-~~-~df~~~-~-----e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~ 281 (390)
T COG5190 210 SPKKTLVLDLDETLVHSSFRYI-TL-LDFLVK-V-----EISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYA 281 (390)
T ss_pred CCccccccCCCccceeeccccc-cc-cchhhc-c-----ccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhc
Confidence 8889999999999999986542 11 111100 0 00012238899999999999999999999999999999999
Q ss_pred HHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCC
Q 040058 146 EAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH 222 (326)
Q Consensus 146 ~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~ 222 (326)
++|+++||+.+ .|++|+| |..|. +.|+|||..++++...++|||++|..|..++.|+|++.+|.
T Consensus 282 ~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~----------- 348 (390)
T COG5190 282 DPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWI----------- 348 (390)
T ss_pred chHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCccc-----------
Confidence 99999999997 7888888 88886 35899999999999999999999999999999999999998
Q ss_pred CCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 040058 223 KSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKV 268 (326)
Q Consensus 223 ~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~ 268 (326)
+++.|.+|.+++++|..|... +..||+.++...
T Consensus 349 ---------~d~~d~el~~ll~~le~L~~~----~~~d~~~~l~~~ 381 (390)
T COG5190 349 ---------SDEHDDELLNLLPFLEDLPDR----DLKDVSSILQSR 381 (390)
T ss_pred ---------ccccchhhhhhcccccccccc----cchhhhhhhhhh
Confidence 257899999999999999875 568999888753
No 10
>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]
Probab=99.73 E-value=2.2e-18 Score=168.04 Aligned_cols=243 Identities=23% Similarity=0.343 Sum_probs=180.7
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchh-hhcccccccc-ceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKY-LKKQIHSFIG-SLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~-l~~~~~~~~~-~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~ 143 (326)
++++.||+|+|+|.+||+.++..+...+. +.....+... ..-..+.+++++.||++..|+...++.||+++||||++.
T Consensus 24 ~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~ 103 (390)
T COG5190 24 DKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRA 103 (390)
T ss_pred CcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeecccc
Confidence 88999999999999999998843333221 1111111101 001112289999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccccceEEeecCCCCCccccCCC-CCCCCCcEEEEeCCchhh---ccCCCCeEEeCccccccccc-c
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDL-VRGQERGIVILDDTESVW---SDHTENLIVLGKYVYFRDKE-L 218 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~vw---~~~~~N~I~I~~y~~f~~~~-~ 218 (326)
||+.+++++||.|.+|.+|+.+|++.....+|.+++ ++.+.++++|+||++++| .. -.|.+...++..+...- +
T Consensus 104 ~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~-~~~~v~~~~~~~~~~~~~i 182 (390)
T COG5190 104 YAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDM-NSNFVAKSPFSKYESDKDI 182 (390)
T ss_pred chhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccccccccCCccch-hhhhhcccccccccccccc
Confidence 999999999999999999999999999988999997 568999999999999999 44 46888888854333221 1
Q ss_pred CC----C-------C-----CCcc--------------c----------------cccCCC--------ccHHHHHHHHH
Q 040058 219 NG----D-------H-----KSYS--------------E----------------TLTDES--------ENEEALANVLR 244 (326)
Q Consensus 219 ~~----~-------~-----~s~~--------------e----------------~~~d~~--------~~D~~L~~l~~ 244 (326)
.. . + ..+. | ...+.+ ..+.+|..++.
T Consensus 183 ~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~ 262 (390)
T COG5190 183 VDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLG 262 (390)
T ss_pred cCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHh
Confidence 10 0 0 0000 0 001112 56899999999
Q ss_pred HHHHHHHHhcCC-----CCCcHHHHHHHHhccC-CCcEEEEcCccch-H----HHHHHH------------HHHhhhCCc
Q 040058 245 VLKTIHRLFFDS-----VCGDVRTYLPKVRSEF-SRDVLYFSAIFRD-C----LWAEQE------------EKFLVQEKK 301 (326)
Q Consensus 245 ~L~~ih~~ff~~-----~~~DVr~il~~~r~~v-~g~~ivfs~~~p~-~----~~~~ae------------a~~a~~~~~ 301 (326)
.|.++|..+|.. ....|..+|...+ + ++|.+.++++++. . |.+.+. +-|+.....
T Consensus 263 ~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~ 340 (390)
T COG5190 263 KLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPEN 340 (390)
T ss_pred hhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccc
Confidence 999999887776 2345888888888 7 9999999999998 2 222222 457777778
Q ss_pred eEEchHHHHH
Q 040058 302 FLVHPRWIDA 311 (326)
Q Consensus 302 ~vV~p~Wl~~ 311 (326)
.||.|.|+.+
T Consensus 341 ~i~i~~W~~d 350 (390)
T COG5190 341 AIPIEKWISD 350 (390)
T ss_pred eeccCccccc
Confidence 9999999997
No 11
>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.
Probab=98.44 E-value=1.2e-07 Score=79.44 Aligned_cols=107 Identities=17% Similarity=0.170 Sum_probs=73.2
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCC-cHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMS-TRCYAEA 147 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g-~~~YA~~ 147 (326)
.||+|||+||+...... .+... -+. . . ++.||+.++|+.+.+ .+.+.|.|++ .+.++..
T Consensus 2 li~~DlD~Tl~~~~~~~-~~~~~-----~~~--------~--~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~ 62 (128)
T TIGR01681 2 VIVFDLDNTLWTGENIV-VGEDP-----IID--------L--E---VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYE 62 (128)
T ss_pred EEEEeCCCCCCCCCccc-ccCCc-----chh--------h--H---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHH
Confidence 58999999999873210 00000 000 0 1 588999999999976 4999999999 9999999
Q ss_pred HHHHhCC------CCccccceEEeecCCCC--CccccCCCCC--CCCCcEEEEeCCchh
Q 040058 148 AVKLLDL------DSKYFSSRIIAREDFNG--KDRKNPDLVR--GQERGIVILDDTESV 196 (326)
Q Consensus 148 v~~~LDP------~~~~F~~Ri~sRd~~~~--~~~KdL~~l~--~~~~~vvIvDD~~~v 196 (326)
+++...+ -..+|.. +++.++.+. .+.+-+++++ ..++.+++|||++..
T Consensus 63 ~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n 120 (128)
T TIGR01681 63 LLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDN 120 (128)
T ss_pred HHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhH
Confidence 9998762 1245654 333333221 2455566678 889999999999854
No 12
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=98.33 E-value=1.2e-06 Score=77.63 Aligned_cols=134 Identities=16% Similarity=0.071 Sum_probs=85.8
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-cHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS-TRCYAE 146 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g-~~~YA~ 146 (326)
..+|+|||.||+......-..+. ....++.. ..+-.. ...-+.++||+.++|+.+.+. +.+.|.|++ .+.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~ 77 (174)
T TIGR01685 3 RVIVFDLDGTLWDHYMISLLGGP-FKPVKQNN---SIIIDK-SGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAY 77 (174)
T ss_pred cEEEEeCCCCCcCcccccccCCC-ceeccCCC---CeEEeC-CCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHH
Confidence 46899999999987654321110 00111111 111111 134578999999999999755 999999988 999999
Q ss_pred HHHHHhCCC--C------ccccceEEeecCCCC-C----ccccCCC-C--CCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058 147 AAVKLLDLD--S------KYFSSRIIAREDFNG-K----DRKNPDL-V--RGQERGIVILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 147 ~v~~~LDP~--~------~~F~~Ri~sRd~~~~-~----~~KdL~~-l--~~~~~~vvIvDD~~~vw~~~~~N~I~I~ 208 (326)
.+++.++.. | .+|.. +++-++... . ..+.+.. + +-+++.+++|||++.-......+++.+-
T Consensus 78 ~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i 154 (174)
T TIGR01685 78 EILGTFEITYAGKTVPMHSLFDD-RIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC 154 (174)
T ss_pred HHHHhCCcCCCCCcccHHHhcee-eeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence 999998854 2 57875 554444321 1 1122222 2 4678999999999977665556666553
No 13
>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).
Probab=98.27 E-value=3.5e-07 Score=80.36 Aligned_cols=87 Identities=17% Similarity=0.160 Sum_probs=65.4
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC----------CccccCCCCCCCC
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG----------KDRKNPDLVRGQE 184 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~~~KdL~~l~~~~ 184 (326)
++..||+.++|+++. +.++|.|++.+.++..+++.++-. .+|.. +++.++... .+.+-+++++.++
T Consensus 83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd~-i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~ 158 (184)
T TIGR01993 83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIE-DCFDG-IFCFDTANPDYLLPKPSPQAYEKALREAGVDP 158 (184)
T ss_pred CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhhCe-EEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence 457899999999998 689999999999999999998865 58874 776665542 1334455677888
Q ss_pred CcEEEEeCCchhhccCCCCeE
Q 040058 185 RGIVILDDTESVWSDHTENLI 205 (326)
Q Consensus 185 ~~vvIvDD~~~vw~~~~~N~I 205 (326)
+.+++|+|++.-......+++
T Consensus 159 ~~~l~vgD~~~di~aA~~~G~ 179 (184)
T TIGR01993 159 ERAIFFDDSARNIAAAKALGM 179 (184)
T ss_pred cceEEEeCCHHHHHHHHHcCC
Confidence 999999999854332233443
No 14
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=98.17 E-value=4.7e-06 Score=79.31 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=62.4
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeC-ccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLR-PFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklR-Pgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
+.+..+|+||||||+..... +.+| ||+.+.|+++.+. +.+.|+|++.+.
T Consensus 124 ~~~kvIvFDLDgTLi~~~~~-----------------------------v~irdPgV~EaL~~LkekGikLaIaTS~~Re 174 (301)
T TIGR01684 124 EPPHVVVFDLDSTLITDEEP-----------------------------VRIRDPRIYDSLTELKKRGCILVLWSYGDRD 174 (301)
T ss_pred ccceEEEEecCCCCcCCCCc-----------------------------cccCCHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence 77789999999999988521 3588 9999999999987 899999999999
Q ss_pred HHHHHHHHhCCCCccccceEEeecCC
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDF 169 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~ 169 (326)
+|..+++.++.. .+|. .|++.++.
T Consensus 175 ~v~~~L~~lGLd-~YFd-vIIs~Gdv 198 (301)
T TIGR01684 175 HVVESMRKVKLD-RYFD-IIISGGHK 198 (301)
T ss_pred HHHHHHHHcCCC-cccC-EEEECCcc
Confidence 999999999998 5785 57765554
No 15
>PRK13288 pyrophosphatase PpaX; Provisional
Probab=98.16 E-value=6e-07 Score=80.77 Aligned_cols=91 Identities=19% Similarity=0.168 Sum_probs=70.6
Q ss_pred EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+++.||+.++|+.+++ .+.+.|.|++.+.++..+++.++-. .||. .+++.++... .+.+-++.++.+++.
T Consensus 80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 157 (214)
T PRK13288 80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFD-VVITLDDVEHAKPDPEPVLKALELLGAKPEE 157 (214)
T ss_pred hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hcee-EEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence 46789999999999976 4999999999999999999999877 6787 4877666542 134455566777899
Q ss_pred EEEEeCCchhhccCCCCeEE
Q 040058 187 IVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~ 206 (326)
+++|+|++.-......+++.
T Consensus 158 ~~~iGDs~~Di~aa~~aG~~ 177 (214)
T PRK13288 158 ALMVGDNHHDILAGKNAGTK 177 (214)
T ss_pred EEEECCCHHHHHHHHHCCCe
Confidence 99999998655433445554
No 16
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=98.14 E-value=2.5e-06 Score=82.18 Aligned_cols=108 Identities=17% Similarity=0.103 Sum_probs=74.1
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA 145 (326)
.+++||+|||+||+....-..-..+ + ......||+.++|+.+.+. +.+.|.|+..+..|
T Consensus 2 ~~k~~v~DlDnTlw~gv~~e~g~~~-------i-------------~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a 61 (320)
T TIGR01686 2 ALKVLVLDLDNTLWGGVLGEDGIDN-------L-------------NLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDA 61 (320)
T ss_pred CeEEEEEcCCCCCCCCEEccCCccc-------c-------------ccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHH
Confidence 4789999999999976532210000 0 0123579999999999866 99999999999999
Q ss_pred HHHHHH----hCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058 146 EAAVKL----LDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 146 ~~v~~~----LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
..+++. +... .+|..-..+...-.....+-++.++-+++.+|+|||++.
T Consensus 62 ~~~l~~~~~~~~~~-~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~ 114 (320)
T TIGR01686 62 KKVFERRKDFILQA-EDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPA 114 (320)
T ss_pred HHHHHhCccccCcH-HHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHH
Confidence 999987 5554 467632222111111233445567788899999999984
No 17
>PLN02575 haloacid dehalogenase-like hydrolase
Probab=98.13 E-value=7.5e-07 Score=87.90 Aligned_cols=89 Identities=16% Similarity=0.207 Sum_probs=70.9
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
+.+.||+.+||+.+.+. +.+.|.|++.+.+++.+++.++-. .||. .|++.++... .+.+-+++++.+++.+
T Consensus 215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd-~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec 292 (381)
T PLN02575 215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFS-VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC 292 (381)
T ss_pred CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHce-EEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence 46789999999999765 999999999999999999999876 6897 5887777642 2455667788889999
Q ss_pred EEEeCCchhhccCCCCeE
Q 040058 188 VILDDTESVWSDHTENLI 205 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I 205 (326)
|+|+|+..-......+++
T Consensus 293 l~IGDS~~DIeAAk~AGm 310 (381)
T PLN02575 293 IVFGNSNQTVEAAHDARM 310 (381)
T ss_pred EEEcCCHHHHHHHHHcCC
Confidence 999999865543334444
No 18
>COG4996 Predicted phosphatase [General function prediction only]
Probab=98.13 E-value=1.4e-05 Score=67.39 Aligned_cols=131 Identities=25% Similarity=0.289 Sum_probs=89.5
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
.+|||+|+||++....+++.+.-. .+.+ +.+ +-..+.-|.++|++.+||+++..- |-+..+|.....-|-++
T Consensus 2 ~i~~d~d~t~wdhh~iSsl~pPf~----rVs~--n~i-~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~a 74 (164)
T COG4996 2 AIVFDADKTLWDHHNISSLEPPFR----RVSS--NTI-EDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKA 74 (164)
T ss_pred cEEEeCCCcccccccchhcCCcce----ecCc--cce-ecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHH
Confidence 579999999998776554432210 1111 000 111267789999999999999866 99999999999999999
Q ss_pred HHHhCCCCccccceEEeecCCCC---CccccCCCC------CCCCCcEEEEeCCc----hhhccCCCCeEEeCccc
Q 040058 149 VKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLV------RGQERGIVILDDTE----SVWSDHTENLIVLGKYV 211 (326)
Q Consensus 149 ~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l------~~~~~~vvIvDD~~----~vw~~~~~N~I~I~~y~ 211 (326)
++.||.. .||..-++ +-.+. +..+-|..+ .-.++++|.+|||. +.|. +-+|+=-++.|.
T Consensus 75 Lral~~~-~yFhy~Vi--ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V~~~~~~~ 146 (164)
T COG4996 75 LRALDLL-QYFHYIVI--EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNVKCLEMWK 146 (164)
T ss_pred HHHhchh-hhEEEEEe--cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCeeeeEeec
Confidence 9999999 78986444 22221 112222222 23578999999998 5675 367777777665
No 19
>PRK14988 GMP/IMP nucleotidase; Provisional
Probab=98.12 E-value=1.2e-06 Score=80.16 Aligned_cols=90 Identities=16% Similarity=0.111 Sum_probs=70.1
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
+.+.||+.++|+.+.+. +.+.|-|++.+.++...++.++-. .+|.. +++.++... .+.+-+++++.+++.+
T Consensus 92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~ 169 (224)
T PRK14988 92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT 169 (224)
T ss_pred CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence 67899999999999875 999999999999999999987765 57875 665565542 1344566778889999
Q ss_pred EEEeCCchhhccCCCCeEE
Q 040058 188 VILDDTESVWSDHTENLIV 206 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I~ 206 (326)
++|+|++.-......+++.
T Consensus 170 l~igDs~~di~aA~~aG~~ 188 (224)
T PRK14988 170 LFIDDSEPILDAAAQFGIR 188 (224)
T ss_pred EEEcCCHHHHHHHHHcCCe
Confidence 9999998655444556664
No 20
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=98.12 E-value=3.2e-06 Score=68.28 Aligned_cols=101 Identities=20% Similarity=0.223 Sum_probs=70.3
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
++|||+||||+........ .....++|++.++|+.+.+. +.++|.|++.+.++..+
T Consensus 1 ~~vfD~D~tl~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~ 57 (139)
T cd01427 1 AVLFDLDGTLLDSEPGIAE-----------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLEL 57 (139)
T ss_pred CeEEccCCceEccCccccc-----------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHH
Confidence 4899999999988743210 11347999999999999987 99999999999999999
Q ss_pred HHHhCCCCccccceEEeecCCCCC----------------------ccccCCCCCCCCCcEEEEeCCch
Q 040058 149 VKLLDLDSKYFSSRIIAREDFNGK----------------------DRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 149 ~~~LDP~~~~F~~Ri~sRd~~~~~----------------------~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
++.+... .+|. .+++.+..... +..-++.++...+.++.+||+..
T Consensus 58 ~~~~~~~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~ 124 (139)
T cd01427 58 LEELGLD-DYFD-PVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLN 124 (139)
T ss_pred HHHcCCc-hhhh-heeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHH
Confidence 9987654 2344 45544433210 01112223445678999999874
No 21
>PHA03398 viral phosphatase superfamily protein; Provisional
Probab=98.08 E-value=1.6e-05 Score=75.77 Aligned_cols=74 Identities=27% Similarity=0.351 Sum_probs=62.5
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeC-ccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLR-PFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklR-Pgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
+.+..+|+||||||+.+... +.+| |++.+.|+++.+. +.+.|+|+|.++
T Consensus 126 ~~~~~i~~D~D~TL~~~~~~-----------------------------v~irdp~V~EtL~eLkekGikLaIvTNg~Re 176 (303)
T PHA03398 126 EIPHVIVFDLDSTLITDEEP-----------------------------VRIRDPFVYDSLDELKERGCVLVLWSYGNRE 176 (303)
T ss_pred eeccEEEEecCCCccCCCCc-----------------------------cccCChhHHHHHHHHHHCCCEEEEEcCCChH
Confidence 77889999999999988521 3588 9999999999986 999999999999
Q ss_pred HHHHHHHHhCCCCccccceEEeecCCC
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDFN 170 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~ 170 (326)
+|..+++.++.. .+|. -+++.++..
T Consensus 177 ~v~~~Le~lgL~-~yFD-vII~~g~i~ 201 (303)
T PHA03398 177 HVVHSLKETKLE-GYFD-IIICGGRKA 201 (303)
T ss_pred HHHHHHHHcCCC-cccc-EEEECCCcc
Confidence 999999999987 6775 466655544
No 22
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=98.02 E-value=1.5e-05 Score=66.23 Aligned_cols=97 Identities=15% Similarity=0.051 Sum_probs=67.5
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-------
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST------- 141 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~------- 141 (326)
.|+||+||||++.. .....+ -...+.||+.++|+.+.+. +.+.|.|++.
T Consensus 2 ~~~~D~dgtL~~~~--~~~~~~---------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~ 58 (132)
T TIGR01662 2 GVVLDLDGTLTDDV--PYVDDE---------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKF 58 (132)
T ss_pred EEEEeCCCceecCC--CCCCCH---------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHH
Confidence 68999999999642 111111 1236899999999999765 9999999999
Q ss_pred -HHHHHHHHHHhCCCCccccceEEeecCCCC----CccccCCCC-CCCCCcEEEEeCC
Q 040058 142 -RCYAEAAVKLLDLDSKYFSSRIIAREDFNG----KDRKNPDLV-RGQERGIVILDDT 193 (326)
Q Consensus 142 -~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----~~~KdL~~l-~~~~~~vvIvDD~ 193 (326)
..++.++++.++.. .+. +++...... .+.+-++++ +.+++.+++|+|+
T Consensus 59 ~~~~~~~~l~~~~l~--~~~--~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~ 112 (132)
T TIGR01662 59 SSGRVARRLEELGVP--IDV--LYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQ 112 (132)
T ss_pred HHHHHHHHHHHCCCC--EEE--EEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCC
Confidence 88899999988764 222 222221111 234445667 4788999999994
No 23
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=98.01 E-value=6.9e-06 Score=70.12 Aligned_cols=106 Identities=10% Similarity=-0.033 Sum_probs=68.2
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-----
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR----- 142 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~----- 142 (326)
.+|++|+||||+......-... +.-+++.||+.++|+.+.+. |.+.|.|++.+
T Consensus 1 ~~~~~d~dgtl~~~~~~~~~~~---------------------~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~ 59 (147)
T TIGR01656 1 PALFLDRDGVINEDTVSDYPRS---------------------LDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGY 59 (147)
T ss_pred CeEEEeCCCceeccCCcccCCC---------------------HHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCc
Confidence 3689999999999875321110 11136899999999999765 99999999874
Q ss_pred ----------HHHHHHHHHhCCCC-ccccceEEeecCCCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058 143 ----------CYAEAAVKLLDLDS-KYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 143 ----------~YA~~v~~~LDP~~-~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
.++..+++.++..- .+|...+.+.++... .+.+-+++++.+++.+++|+|++.
T Consensus 60 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~ 129 (147)
T TIGR01656 60 FSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLR 129 (147)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHH
Confidence 56777777776541 011111110121111 133344556778899999999864
No 24
>PRK13225 phosphoglycolate phosphatase; Provisional
Probab=97.98 E-value=1.7e-06 Score=81.80 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=65.7
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVIL 190 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIv 190 (326)
+.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++... .+.+-+++++.+++.+++|
T Consensus 141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~-~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I 218 (273)
T PRK13225 141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS-VVQAGTPILSKRRALSQLVAREGWQPAAVMYV 218 (273)
T ss_pred CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE-EEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence 56789999999999755 899999999999999999999876 5787 4665554322 1223334456677899999
Q ss_pred eCCchhhccCCCCeEEe
Q 040058 191 DDTESVWSDHTENLIVL 207 (326)
Q Consensus 191 DD~~~vw~~~~~N~I~I 207 (326)
+|++.-......+++..
T Consensus 219 GDs~~Di~aA~~AG~~~ 235 (273)
T PRK13225 219 GDETRDVEAARQVGLIA 235 (273)
T ss_pred CCCHHHHHHHHHCCCeE
Confidence 99985443333445543
No 25
>TIGR03351 PhnX-like phosphonatase-like hydrolase. This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the
Probab=97.97 E-value=8.2e-06 Score=73.46 Aligned_cols=91 Identities=14% Similarity=0.040 Sum_probs=67.5
Q ss_pred EEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCC-CccccceEEeecCCCC------CccccCCCCCCC-CC
Q 040058 115 VKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLD-SKYFSSRIIAREDFNG------KDRKNPDLVRGQ-ER 185 (326)
Q Consensus 115 vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~-~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~-~~ 185 (326)
..+.||+.++|+.+++ .+.+.|-|++.+.++..+++.++-. +.+|. .+++.++... .+.+-+++++.. ++
T Consensus 86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 164 (220)
T TIGR03351 86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD-AVVCPSDVAAGRPAPDLILRAMELTGVQDVQ 164 (220)
T ss_pred CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC-EEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence 5799999999999975 5999999999999999999998765 26886 5777766432 134445666665 68
Q ss_pred cEEEEeCCchhhccCCCCeEE
Q 040058 186 GIVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 186 ~vvIvDD~~~vw~~~~~N~I~ 206 (326)
.+++|+|++.-.......++.
T Consensus 165 ~~~~igD~~~Di~aa~~aG~~ 185 (220)
T TIGR03351 165 SVAVAGDTPNDLEAGINAGAG 185 (220)
T ss_pred HeEEeCCCHHHHHHHHHCCCC
Confidence 999999998544322334443
No 26
>TIGR01261 hisB_Nterm histidinol-phosphatase. This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.
Probab=97.89 E-value=2.7e-05 Score=68.04 Aligned_cols=117 Identities=10% Similarity=-0.011 Sum_probs=76.9
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-------
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS------- 140 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g------- 140 (326)
..|.||.||||++..... +.... .-.+++-||+.++|+.|.+. |.++|.|+.
T Consensus 2 ~~~~~d~dg~l~~~~~~~-------~~~~~-------------~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~ 61 (161)
T TIGR01261 2 KILFIDRDGTLIEEPPSD-------FQVDA-------------LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPS 61 (161)
T ss_pred CEEEEeCCCCccccCCCc-------cccCC-------------HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCc
Confidence 578999999999954211 00000 11357899999999999875 999999996
Q ss_pred --------cHHHHHHHHHHhCCCCccccceEEe----ecCCCCC------ccccCCCCCCCCCcEEEEeCCchhhccCCC
Q 040058 141 --------TRCYAEAAVKLLDLDSKYFSSRIIA----REDFNGK------DRKNPDLVRGQERGIVILDDTESVWSDHTE 202 (326)
Q Consensus 141 --------~~~YA~~v~~~LDP~~~~F~~Ri~s----Rd~~~~~------~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~ 202 (326)
...++..+++.++.. |...+++ .+++... +..-+++++.+.+.+++|+|+..-......
T Consensus 62 ~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~ 138 (161)
T TIGR01261 62 FPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAEN 138 (161)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHH
Confidence 467888888888875 6544555 2443221 222234456788899999999643322334
Q ss_pred CeEEeC
Q 040058 203 NLIVLG 208 (326)
Q Consensus 203 N~I~I~ 208 (326)
+++..-
T Consensus 139 aGi~~i 144 (161)
T TIGR01261 139 LGIRGI 144 (161)
T ss_pred CCCeEE
Confidence 555443
No 27
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.85 E-value=1.5e-05 Score=75.40 Aligned_cols=122 Identities=15% Similarity=0.100 Sum_probs=86.8
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.++..+++|+|+||......... +|+. ..-..+.||+.++|+.+.+. +.++|.|+.....
T Consensus 156 ~~~~~~~~D~dgtl~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~ 216 (300)
T PHA02530 156 GLPKAVIFDIDGTLAKMGGRSPY-DWTK------------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC 216 (300)
T ss_pred CCCCEEEEECCCcCcCCCCCCcc-chhh------------------cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh
Confidence 55789999999999987543211 1110 01126899999999999776 9999999999999
Q ss_pred HHHHHHHhCCCCccccceEEeecC-------CCC------CccccCCCCCC-CCCcEEEEeCCchhhccCCCCeEEe
Q 040058 145 AEAAVKLLDLDSKYFSSRIIARED-------FNG------KDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 145 A~~v~~~LDP~~~~F~~Ri~sRd~-------~~~------~~~KdL~~l~~-~~~~vvIvDD~~~vw~~~~~N~I~I 207 (326)
++.+++.|+..+.+|. .+++.+. ... ...+.|..++. +.+.+++|||++..-.....+++.+
T Consensus 217 ~~~~l~~l~~~~~~f~-~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~ 292 (300)
T PHA02530 217 EEDTVEWLRQTDIWFD-DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLEC 292 (300)
T ss_pred HHHHHHHHHHcCCchh-hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence 9999999999877886 3666652 111 12233444455 5689999999997665545666654
No 28
>PHA02597 30.2 hypothetical protein; Provisional
Probab=97.81 E-value=7.6e-06 Score=72.62 Aligned_cols=95 Identities=12% Similarity=0.071 Sum_probs=62.4
Q ss_pred EEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCC---ccccceEEeecCCCCC---ccccCCCCCCCCCc
Q 040058 113 KLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDS---KYFSSRIIAREDFNGK---DRKNPDLVRGQERG 186 (326)
Q Consensus 113 ~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~---~~F~~Ri~sRd~~~~~---~~KdL~~l~~~~~~ 186 (326)
..+++.||+.++|+.|.+.+.+++-|++.........+.+...+ .+|+ .+++.++.... +.+-+++++ ++.
T Consensus 71 ~~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~-~i~~~~~~~~kp~~~~~a~~~~~--~~~ 147 (197)
T PHA02597 71 RYLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFS-EVLMCGHDESKEKLFIKAKEKYG--DRV 147 (197)
T ss_pred HhccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCccc-EEEEeccCcccHHHHHHHHHHhC--CCc
Confidence 34678999999999999888888888877665555666554331 2564 46655554321 222334455 678
Q ss_pred EEEEeCCchhhccCCCC--eEEeCcc
Q 040058 187 IVILDDTESVWSDHTEN--LIVLGKY 210 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N--~I~I~~y 210 (326)
+|+|||+..-......+ +|++--+
T Consensus 148 ~v~vgDs~~di~aA~~a~~Gi~~i~~ 173 (197)
T PHA02597 148 VCFVDDLAHNLDAAHEALSQLPVIHM 173 (197)
T ss_pred EEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence 99999999766544555 6655433
No 29
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.
Probab=97.80 E-value=7.2e-05 Score=65.60 Aligned_cols=104 Identities=15% Similarity=0.041 Sum_probs=66.0
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCcHH---
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMSTRC--- 143 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~--- 143 (326)
+..++||+||||+.+..... +... . .-+..+-||+.+.|+.+.+ .|.+.|.|++...
T Consensus 13 ~k~~~~D~Dgtl~~~~~~~~------~~~~-~------------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~ 73 (166)
T TIGR01664 13 SKVAAFDLDGTLITTRSGKV------FPTS-A------------SDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRG 73 (166)
T ss_pred CcEEEEeCCCceEecCCCCc------ccCC-h------------HHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccC
Confidence 45688899999998653211 0000 0 0122367999999999965 5999999998763
Q ss_pred ---------HHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCC--CCCCcEEEEeCCc
Q 040058 144 ---------YAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVR--GQERGIVILDDTE 194 (326)
Q Consensus 144 ---------YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~--~~~~~vvIvDD~~ 194 (326)
+++.+++.++.. +. -+++-++... .+..-+++++ .+++.+++|.|++
T Consensus 74 ~~~~~~~~~~i~~~l~~~gl~---~~-~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~ 137 (166)
T TIGR01664 74 KLSAESFKNKIEAFLEKLKVP---IQ-VLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA 137 (166)
T ss_pred cccHHHHHHHHHHHHHHcCCC---EE-EEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence 566777777764 21 2443333211 1122234455 6788999999996
No 30
>PLN02940 riboflavin kinase
Probab=97.72 E-value=9.8e-06 Score=80.13 Aligned_cols=91 Identities=14% Similarity=0.133 Sum_probs=67.6
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHH-HhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVK-LLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER 185 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~-~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~ 185 (326)
.+.+.||+.++|+.+.+. +.+.|-|++.+.++..+++ ..+-. .+|. .+++.++... .+..-+++++..++
T Consensus 91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd-~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~ 168 (382)
T PLN02940 91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFS-VIVGGDEVEKGKPSPDIFLEAAKRLNVEPS 168 (382)
T ss_pred cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCC-EEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence 356889999999999766 9999999999999998887 55554 5787 5777777643 23445566777889
Q ss_pred cEEEEeCCchhhccCCCCeEE
Q 040058 186 GIVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 186 ~vvIvDD~~~vw~~~~~N~I~ 206 (326)
.+|+|+|++.--......++.
T Consensus 169 ~~l~VGDs~~Di~aA~~aGi~ 189 (382)
T PLN02940 169 NCLVIEDSLPGVMAGKAAGME 189 (382)
T ss_pred HEEEEeCCHHHHHHHHHcCCE
Confidence 999999998544333334443
No 31
>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase. This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).
Probab=97.71 E-value=6.7e-05 Score=65.89 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=68.0
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-----
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR----- 142 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~----- 142 (326)
..|.||+||||+-.... +.. .+ -+.+-||+.++|+++.+. |.++|.|++..
T Consensus 2 ~~~~~D~Dgtl~~~~~~--~~~--------~~-------------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~ 58 (176)
T TIGR00213 2 KAIFLDRDGTINIDHGY--VHE--------ID-------------NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGY 58 (176)
T ss_pred CEEEEeCCCCEeCCCCC--CCC--------HH-------------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCc
Confidence 46889999999942110 000 00 136889999999999866 99999999985
Q ss_pred ----------HHHHHHHHHhCCCCccccceEEee-----------cCCCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058 143 ----------CYAEAAVKLLDLDSKYFSSRIIAR-----------EDFNG------KDRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 143 ----------~YA~~v~~~LDP~~~~F~~Ri~sR-----------d~~~~------~~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
.|...++..+... |.. ++.. +++.. .+.+-+++++-+++.+++|+|++.
T Consensus 59 ~~~~~~~~~~~~~~~~l~~~~~~---~~~-i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~ 134 (176)
T TIGR00213 59 FTEAQFEQLTEWMDWSLAERDVD---LDG-IYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLE 134 (176)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCC---ccE-EEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHH
Confidence 4444555443322 332 3221 12211 234456667788999999999975
Q ss_pred hhccCCCCeE
Q 040058 196 VWSDHTENLI 205 (326)
Q Consensus 196 vw~~~~~N~I 205 (326)
-......+++
T Consensus 135 Di~aA~~aG~ 144 (176)
T TIGR00213 135 DMQAGVAAKV 144 (176)
T ss_pred HHHHHHHCCC
Confidence 4432334444
No 32
>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.
Probab=97.68 E-value=3.9e-05 Score=67.78 Aligned_cols=123 Identities=19% Similarity=0.162 Sum_probs=64.8
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEc-CCcHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCT-MSTRCYA 145 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT-~g~~~YA 145 (326)
+..+|+|||.||+.-.....+++.- ...... ..+. -..+.-+.+-|++.+.|+++... .+|.+.| +..++.|
T Consensus 3 PklvvFDLD~TlW~~~~~~~~~~Pf---~~~~~~--~~v~-D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A 76 (169)
T PF12689_consen 3 PKLVVFDLDYTLWPPWMDTHVGPPF---KKISNG--NVVV-DSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWA 76 (169)
T ss_dssp -SEEEE-STTTSSSS-TTTSS-S-E---EE-TTS----EE-ETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHH
T ss_pred CcEEEEcCcCCCCchhHhhccCCCc---eecCCC--CEEE-eCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHH
Confidence 5678999999999887665433211 000000 0011 01256689999999999999865 9999999 5688999
Q ss_pred HHHHHHhCCC---------CccccceEEeecCCCCCccccCC-CCCCCCCcEEEEeCCchhh
Q 040058 146 EAAVKLLDLD---------SKYFSSRIIAREDFNGKDRKNPD-LVRGQERGIVILDDTESVW 197 (326)
Q Consensus 146 ~~v~~~LDP~---------~~~F~~Ri~sRd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~vw 197 (326)
.++++.|+.. ..+|.+-=+... +...+.+.|. ..+-+.+.++++||....-
T Consensus 77 ~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~ 137 (169)
T PF12689_consen 77 RELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI 137 (169)
T ss_dssp HHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred HHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence 9999998876 124543222221 1112333333 3466788899999997543
No 33
>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672. Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.
Probab=97.65 E-value=5.4e-05 Score=70.34 Aligned_cols=149 Identities=14% Similarity=0.160 Sum_probs=82.7
Q ss_pred cceeeec-cceecCccccCceEEEEeCCCceeeecccCC-----CCccc-hhhhccccccccceeeccceEEEEeCccHH
Q 040058 50 LSFDYML-RGLRYSEQEERKLQLVLNLDHTLLHCRNIKS-----LSSGE-KYLKKQIHSFIGSLFQMANDKLVKLRPFVR 122 (326)
Q Consensus 50 ~~~~~~~-~~l~~s~~~~~Kl~LVLDLD~TLIhs~~~~~-----~~~~e-~~l~~~~~~~~~~l~~~~~~~~vklRPgl~ 122 (326)
.+++++. ..+.=|-+.++++.++|||||||++|+..-. .++.+ .++..+.- .+.+.....-.....|++.
T Consensus 44 ~~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~---w~~~~~~~~~~s~p~~~a~ 120 (237)
T TIGR01672 44 APIHWISVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVF---WEKVNNGWDEFSIPKEVAR 120 (237)
T ss_pred CCeeEEEHHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHH---HHHHHHhcccCCcchhHHH
Confidence 3455543 2222233336677999999999999986210 01100 01111000 0000000022334555699
Q ss_pred HHHHHhhcC-ceEEEEcCC----cHHHHHHHHHHhCCCCccccceEEeecCCCC-CccccCCCCCCCCCcEEEEeCCchh
Q 040058 123 TFLEQASSL-VDIYLCTMS----TRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-KDRKNPDLVRGQERGIVILDDTESV 196 (326)
Q Consensus 123 eFL~~ls~~-yEl~IyT~g----~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-~~~KdL~~l~~~~~~vvIvDD~~~v 196 (326)
+||+.+.+. +.+.|-|+. .+.+++.+++.++-. .+|. -+++.++... ...|. ..+ .....++.+-|+..=
T Consensus 121 elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~-~~f~-~i~~~d~~~~~Kp~~~-~~l-~~~~i~i~vGDs~~D 196 (237)
T TIGR01672 121 QLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP-AMNP-VIFAGDKPGQYQYTKT-QWI-QDKNIRIHYGDSDND 196 (237)
T ss_pred HHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc-hhee-EEECCCCCCCCCCCHH-HHH-HhCCCeEEEeCCHHH
Confidence 999999876 999999998 677999999988876 4775 4676555432 11111 111 223347889998754
Q ss_pred hccCCCCeE
Q 040058 197 WSDHTENLI 205 (326)
Q Consensus 197 w~~~~~N~I 205 (326)
......+++
T Consensus 197 I~aAk~AGi 205 (237)
T TIGR01672 197 ITAAKEAGA 205 (237)
T ss_pred HHHHHHCCC
Confidence 433333443
No 34
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=97.62 E-value=6.5e-05 Score=68.11 Aligned_cols=84 Identities=7% Similarity=0.041 Sum_probs=55.2
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE-eecC----------------CCCCccc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII-ARED----------------FNGKDRK 175 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~-sRd~----------------~~~~~~K 175 (326)
.+.++||+.+||+.+.+. +.+.|.|+|.+.|++++++.+-+...++.+... +.+. |+....+
T Consensus 72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~ 151 (219)
T PRK09552 72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS 151 (219)
T ss_pred CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence 368999999999999866 999999999999999999876112234433222 1111 1111112
Q ss_pred cCCCCCCCCCcEEEEeCCchhh
Q 040058 176 NPDLVRGQERGIVILDDTESVW 197 (326)
Q Consensus 176 dL~~l~~~~~~vvIvDD~~~vw 197 (326)
-++.++.+...+|+|.|+..=.
T Consensus 152 ~l~~~~~~~~~~i~iGDs~~Di 173 (219)
T PRK09552 152 LIRKLSDTNDFHIVIGDSITDL 173 (219)
T ss_pred HHHHhccCCCCEEEEeCCHHHH
Confidence 2334455667899999997433
No 35
>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated
Probab=97.60 E-value=0.00021 Score=62.91 Aligned_cols=102 Identities=9% Similarity=-0.032 Sum_probs=65.4
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH----
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR---- 142 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~---- 142 (326)
.+.|+||+||||+-... . +. .. .-.+.+.||+.++|+++++. |.+.|.|++++
T Consensus 3 ~~~~~~d~~~t~~~~~~-~-------~~-~~-------------~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~ 60 (181)
T PRK08942 3 MKAIFLDRDGVINVDSD-G-------YV-KS-------------PDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARG 60 (181)
T ss_pred ccEEEEECCCCcccCCc-c-------cc-CC-------------HHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCC
Confidence 46899999999854431 1 00 00 00236889999999999876 99999999873
Q ss_pred -----------HHHHHHHHHhCCCCccccceEEeecC-----CCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058 143 -----------CYAEAAVKLLDLDSKYFSSRIIARED-----FNG------KDRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 143 -----------~YA~~v~~~LDP~~~~F~~Ri~sRd~-----~~~------~~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
++...+++.++ .+|.. ++...+ ... .+.+-++.++.+++.+++|+|++.
T Consensus 61 ~~~~~~~~~~~~~~~~~l~~~g---~~f~~-i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~ 131 (181)
T PRK08942 61 LFTEAQLNALHEKMDWSLADRG---GRLDG-IYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLR 131 (181)
T ss_pred cCCHHHHHHHHHHHHHHHHHcC---Cccce-EEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence 33444454443 23553 443221 111 134455667778899999999974
No 36
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=97.55 E-value=2.4e-05 Score=70.40 Aligned_cols=84 Identities=13% Similarity=0.074 Sum_probs=59.9
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec-------C---CCC-----CccccC
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE-------D---FNG-----KDRKNP 177 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd-------~---~~~-----~~~KdL 177 (326)
.++++||+.+||+.+.+. +.++|.|+|.+.++..+++.++-. .+|.+.+.+-+ . +.. .+.+-+
T Consensus 83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~ 161 (219)
T TIGR00338 83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD-AAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL 161 (219)
T ss_pred cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-ceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence 357899999999999875 999999999999999999998776 36765443211 0 000 012223
Q ss_pred CCCCCCCCcEEEEeCCchhhc
Q 040058 178 DLVRGQERGIVILDDTESVWS 198 (326)
Q Consensus 178 ~~l~~~~~~vvIvDD~~~vw~ 198 (326)
++++.+.+.+++|+|+..-..
T Consensus 162 ~~~~~~~~~~i~iGDs~~Di~ 182 (219)
T TIGR00338 162 RKEGISPENTVAVGDGANDLS 182 (219)
T ss_pred HHcCCCHHHEEEEECCHHHHH
Confidence 345667789999999974443
No 37
>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins.
Probab=97.49 E-value=0.00053 Score=64.89 Aligned_cols=75 Identities=24% Similarity=0.238 Sum_probs=61.6
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCc-eEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLV-DIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~y-El~IyT~g~~~Y 144 (326)
+.+-++|+|||.|||....... -.-|.+.+-|.++.+.+ -+++|+.|+++|
T Consensus 120 ~~phVIVfDlD~TLItd~~~v~----------------------------Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH 171 (297)
T PF05152_consen 120 EPPHVIVFDLDSTLITDEGDVR----------------------------IRDPAVYDSLRELKEQGCVLVLWSYGNREH 171 (297)
T ss_pred CCCcEEEEECCCcccccCCccc----------------------------cCChHHHHHHHHHHHcCCEEEEecCCCHHH
Confidence 7888999999999998863211 13488899999999885 899999999999
Q ss_pred HHHHHHHhCCCCccccceEEeecCCC
Q 040058 145 AEAAVKLLDLDSKYFSSRIIAREDFN 170 (326)
Q Consensus 145 A~~v~~~LDP~~~~F~~Ri~sRd~~~ 170 (326)
|..-++.++.. .+|. -|++++...
T Consensus 172 V~~sl~~~~L~-~~Fd-~ii~~G~~~ 195 (297)
T PF05152_consen 172 VRHSLKELKLE-GYFD-IIICGGNKA 195 (297)
T ss_pred HHHHHHHhCCc-cccE-EEEeCCccC
Confidence 99999999988 6787 488766544
No 38
>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.
Probab=97.40 E-value=0.00033 Score=60.89 Aligned_cols=50 Identities=10% Similarity=0.237 Sum_probs=42.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEee
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAR 166 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sR 166 (326)
+.++||+.++|+.+.+. +.++|.|++.+.+++.+++.++-. .+|. .+++.
T Consensus 71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~~ 121 (188)
T TIGR01489 71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFI-EIYSN 121 (188)
T ss_pred CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hhee-EEecc
Confidence 68999999999999765 999999999999999999988765 4675 36653
No 39
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=97.34 E-value=0.00029 Score=59.51 Aligned_cols=83 Identities=23% Similarity=0.319 Sum_probs=68.0
Q ss_pred EEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058 113 KLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER 185 (326)
Q Consensus 113 ~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~ 185 (326)
....+.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+|. .+++.++.+. .+.+-++.++.+++
T Consensus 74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~ 151 (176)
T PF13419_consen 74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFD-EIISSDDVGSRKPDPDAYRRALEKLGIPPE 151 (176)
T ss_dssp GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCS-EEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccc-cccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence 56799999999999999 66999999999999999999999877 6787 5777776653 13344555677889
Q ss_pred cEEEEeCCchhh
Q 040058 186 GIVILDDTESVW 197 (326)
Q Consensus 186 ~vvIvDD~~~vw 197 (326)
.+++|||++.-.
T Consensus 152 ~~~~vgD~~~d~ 163 (176)
T PF13419_consen 152 EILFVGDSPSDV 163 (176)
T ss_dssp GEEEEESSHHHH
T ss_pred eEEEEeCCHHHH
Confidence 999999998544
No 40
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=97.32 E-value=0.00027 Score=63.45 Aligned_cols=80 Identities=14% Similarity=0.095 Sum_probs=66.4
Q ss_pred EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058 113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER 185 (326)
Q Consensus 113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~ 185 (326)
.++.+.||+.++|+.+.+. +.+.|.|++.+.++...++.++.. .+|. .+++.++.+. .+.+-+++++.+.+
T Consensus 91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~ 168 (221)
T TIGR02253 91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFD-AVITSEEEGVEKPHPKIFYAALKRLGVKPE 168 (221)
T ss_pred HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-Hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence 3468999999999999876 999999999999999999999886 6887 4777776653 24455677888889
Q ss_pred cEEEEeCCc
Q 040058 186 GIVILDDTE 194 (326)
Q Consensus 186 ~vvIvDD~~ 194 (326)
.+|+|+|++
T Consensus 169 ~~~~igDs~ 177 (221)
T TIGR02253 169 EAVMVGDRL 177 (221)
T ss_pred hEEEECCCh
Confidence 999999997
No 41
>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668. This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.
Probab=97.22 E-value=0.00045 Score=60.57 Aligned_cols=104 Identities=15% Similarity=0.119 Sum_probs=70.1
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-HH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-RC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-~~ 143 (326)
..-..+|+|+|+||..... ..+-||+.++|+.+.+. +.++|.|++. ..
T Consensus 23 ~~v~~vv~D~Dgtl~~~~~------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~ 72 (170)
T TIGR01668 23 VGIKGVVLDKDNTLVYPDH------------------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQ 72 (170)
T ss_pred CCCCEEEEecCCccccCCC------------------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHH
Confidence 4556789999999986531 13679999999999876 9999999999 68
Q ss_pred HHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc--hhhccCCCCeE
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE--SVWSDHTENLI 205 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~vw~~~~~N~I 205 (326)
.+..+++.++.. .+++. ..-....+.+-++.++.+.+.+++|+|+. ++-.. ..+++
T Consensus 73 ~~~~~~~~~gl~-~~~~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA-~~aGi 130 (170)
T TIGR01668 73 RAKAVEKALGIP-VLPHA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG-NRNGS 130 (170)
T ss_pred HHHHHHHHcCCE-EEcCC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH-HHcCC
Confidence 888887776643 11110 00011123344555677788999999996 55543 33444
No 42
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=97.13 E-value=0.0004 Score=64.30 Aligned_cols=93 Identities=14% Similarity=0.104 Sum_probs=72.6
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. +.+.|-|++.+.+++.+++.++-. .||. .+++.++... .+.+-+++++.+++.
T Consensus 106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~ 183 (248)
T PLN02770 106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQ-AVIIGSECEHAKPHPDPYLKALEVLKVSKDH 183 (248)
T ss_pred cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCc-EEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence 467899999999999655 999999999999999999999887 6887 4777776543 245556777888899
Q ss_pred EEEEeCCchhhccCCCCeEEeC
Q 040058 187 IVILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I~ 208 (326)
+++|+|++.-......+++.+-
T Consensus 184 ~l~vgDs~~Di~aA~~aGi~~i 205 (248)
T PLN02770 184 TFVFEDSVSGIKAGVAAGMPVV 205 (248)
T ss_pred EEEEcCCHHHHHHHHHCCCEEE
Confidence 9999999854443345555543
No 43
>PRK06769 hypothetical protein; Validated
Probab=97.13 E-value=0.0008 Score=59.15 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=48.6
Q ss_pred EeCccHHHHHHHhhcC-ceEEEEcCCcHHH-----HHHHHHHhCCCCccccceEEeec----CCCC------CccccCCC
Q 040058 116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCY-----AEAAVKLLDLDSKYFSSRIIARE----DFNG------KDRKNPDL 179 (326)
Q Consensus 116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~Y-----A~~v~~~LDP~~~~F~~Ri~sRd----~~~~------~~~KdL~~ 179 (326)
.+-||+.++|++|.+. |.+.|.|++.... .......+...| |.+.+++-. +... .+.+-+++
T Consensus 28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~ 105 (173)
T PRK06769 28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEK 105 (173)
T ss_pred EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence 6789999999999765 9999999987521 011222222222 222233222 1111 24455666
Q ss_pred CCCCCCcEEEEeCCch
Q 040058 180 VRGQERGIVILDDTES 195 (326)
Q Consensus 180 l~~~~~~vvIvDD~~~ 195 (326)
++.+++.+++|+|++.
T Consensus 106 l~~~p~~~i~IGD~~~ 121 (173)
T PRK06769 106 HGLDLTQCAVIGDRWT 121 (173)
T ss_pred cCCCHHHeEEEcCCHH
Confidence 7788999999999974
No 44
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=97.12 E-value=0.0004 Score=65.21 Aligned_cols=92 Identities=18% Similarity=0.286 Sum_probs=72.7
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. |.+.|.|++++.++..+++.++-. .||. .+++.++... .+.+-+++++..++.
T Consensus 107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~ 184 (260)
T PLN03243 107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFS-VVLAAEDVYRGKPDPEMFMYAAERLGFIPER 184 (260)
T ss_pred CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH-hhCc-EEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence 467899999999999865 999999999999999999999876 5787 4777777642 245667778888999
Q ss_pred EEEEeCCchhhccCCCCeEEe
Q 040058 187 IVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I 207 (326)
+++|+|+..-......+++.+
T Consensus 185 ~l~IgDs~~Di~aA~~aG~~~ 205 (260)
T PLN03243 185 CIVFGNSNSSVEAAHDGCMKC 205 (260)
T ss_pred eEEEcCCHHHHHHHHHcCCEE
Confidence 999999986554444555543
No 45
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=97.11 E-value=0.00044 Score=61.59 Aligned_cols=95 Identities=18% Similarity=0.126 Sum_probs=72.5
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++... .+.+-++.++.+++.
T Consensus 83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~ 160 (213)
T TIGR01449 83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA-KYFS-VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ 160 (213)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH-hhCc-EEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence 468999999999999765 999999999999999999998876 4786 5777665432 134456667788889
Q ss_pred EEEEeCCchhhccCCCCeEEeCcc
Q 040058 187 IVILDDTESVWSDHTENLIVLGKY 210 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I~~y 210 (326)
+++|+|++.-.......++.+-..
T Consensus 161 ~~~igDs~~d~~aa~~aG~~~i~v 184 (213)
T TIGR01449 161 MVYVGDSRVDIQAARAAGCPSVLL 184 (213)
T ss_pred eEEeCCCHHHHHHHHHCCCeEEEE
Confidence 999999986554434555555433
No 46
>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family. which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.
Probab=97.08 E-value=0.00094 Score=63.11 Aligned_cols=120 Identities=19% Similarity=0.237 Sum_probs=67.2
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhcccccccccee-eccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLF-QMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~-~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
.+|+.+|||+|||+++.+... ....+. ...+...-| .....--...-||+.+||+.+.+. ..++|-|+..+.
T Consensus 73 ~kp~AVV~DIDeTvLdns~y~----~~~~~~--~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~ 146 (266)
T TIGR01533 73 DKKYAIVLDLDETVLDNSPYQ----GYQVLN--NKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEK 146 (266)
T ss_pred CCCCEEEEeCccccccChHHH----HHHhcC--CCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 678999999999999876321 000000 000000000 000011235789999999999765 899999998876
Q ss_pred HHHHHHH---HhCCCCccccceEEeecCCCCCccccCCC--CCCCCCcEEEEeCCch
Q 040058 144 YAEAAVK---LLDLDSKYFSSRIIAREDFNGKDRKNPDL--VRGQERGIVILDDTES 195 (326)
Q Consensus 144 YA~~v~~---~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~ 195 (326)
+.+...+ .++-.. .+.+.++.|++.. -|..++ +-.+-.-++.|.|+..
T Consensus 147 ~~~~T~~~Lkk~Gi~~-~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~ 199 (266)
T TIGR01533 147 EKAATLKNLKRFGFPQ-ADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLL 199 (266)
T ss_pred hHHHHHHHHHHcCcCC-CCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHH
Confidence 6664444 444432 2334577776432 233222 2223344777888754
No 47
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=97.07 E-value=0.00043 Score=61.32 Aligned_cols=82 Identities=10% Similarity=0.072 Sum_probs=65.3
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. |.+.|.|++...++..+++.++-. .+|. .+++.++.+. .+.+-+++++.+++.
T Consensus 90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~ 167 (198)
T TIGR01428 90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFD-AVLSADAVRAYKPAPQVYQLALEALGVPPDE 167 (198)
T ss_pred cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhh-eeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence 356889999999999986 999999999999999999988765 5786 4777776543 133445567778899
Q ss_pred EEEEeCCchhh
Q 040058 187 IVILDDTESVW 197 (326)
Q Consensus 187 vvIvDD~~~vw 197 (326)
+++|+|++.-.
T Consensus 168 ~~~vgD~~~Di 178 (198)
T TIGR01428 168 VLFVASNPWDL 178 (198)
T ss_pred EEEEeCCHHHH
Confidence 99999998433
No 48
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=97.05 E-value=0.00065 Score=58.64 Aligned_cols=80 Identities=21% Similarity=0.147 Sum_probs=60.1
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
+.+.||+.+||+.+++. +.+.|.|++...+ ..+...++.. .+|.. +++.++... .+.+-+++++.+++.+
T Consensus 84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~-~~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 160 (183)
T TIGR01509 84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR-DLFDV-VIFSGDVGRGKPDPDIYLLALKKLGLKPEEC 160 (183)
T ss_pred CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH-HHCCE-EEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence 68899999999999865 9999999999999 6666657776 46874 555454432 1334455667788999
Q ss_pred EEEeCCchhh
Q 040058 188 VILDDTESVW 197 (326)
Q Consensus 188 vIvDD~~~vw 197 (326)
++|||++.--
T Consensus 161 ~~vgD~~~di 170 (183)
T TIGR01509 161 LFVDDSPAGI 170 (183)
T ss_pred EEEcCCHHHH
Confidence 9999998533
No 49
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=97.04 E-value=0.00066 Score=60.53 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=70.9
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++-. .+|. .+++.++... .+.+-+++++.+.+.
T Consensus 73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~ 150 (205)
T TIGR01454 73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL-PLFD-HVIGSDEVPRPKPAPDIVREALRLLDVPPED 150 (205)
T ss_pred ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh-hhee-eEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence 467899999999999765 999999999999999999999887 4787 4777666532 133344556778899
Q ss_pred EEEEeCCchhhccCCCCeEEeC
Q 040058 187 IVILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I~ 208 (326)
+++|+|++.-......+++++-
T Consensus 151 ~l~igD~~~Di~aA~~~Gi~~i 172 (205)
T TIGR01454 151 AVMVGDAVTDLASARAAGTATV 172 (205)
T ss_pred eEEEcCCHHHHHHHHHcCCeEE
Confidence 9999999754443455666543
No 50
>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional
Probab=97.03 E-value=0.0025 Score=62.62 Aligned_cols=105 Identities=11% Similarity=0.071 Sum_probs=68.1
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-----
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS----- 140 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g----- 140 (326)
+|.+|+||-|+||+...... ++... ...+.+.||+.++|+.+.+. |.++|.|++
T Consensus 1 ~~k~l~lDrDgtl~~~~~~~-------y~~~~-------------~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~ 60 (354)
T PRK05446 1 MQKILFIDRDGTLIEEPPTD-------FQVDS-------------LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGT 60 (354)
T ss_pred CCcEEEEeCCCCccCCCCcc-------ccccC-------------cccceECcCHHHHHHHHHhCCCeEEEEECCccccC
Confidence 47899999999999986321 11111 12368999999999999865 999999995
Q ss_pred ----------cHHHHHHHHHHhCCCCccccceEEee----cCCCCC------ccccCCCCCCCCCcEEEEeCCc
Q 040058 141 ----------TRCYAEAAVKLLDLDSKYFSSRIIAR----EDFNGK------DRKNPDLVRGQERGIVILDDTE 194 (326)
Q Consensus 141 ----------~~~YA~~v~~~LDP~~~~F~~Ri~sR----d~~~~~------~~KdL~~l~~~~~~vvIvDD~~ 194 (326)
.+.++..+++.++. .|..-+++. +++... +..-++.++.+++.+++|.|+.
T Consensus 61 ~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~ 131 (354)
T PRK05446 61 DSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE 131 (354)
T ss_pred ccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence 34556666665544 364323432 333221 1111233456789999999996
No 51
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=97.03 E-value=0.00096 Score=59.68 Aligned_cols=79 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCC-CCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLV-RGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l-~~~~~~ 186 (326)
.++++||+.++|+++.+.+.++|-|++.+.+++.+++.++-. .+|. .+++.++... .+.+-++++ +.+++.
T Consensus 95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~-~~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~ 172 (224)
T TIGR02254 95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLF-PFFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEE 172 (224)
T ss_pred cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcH-hhcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence 368999999999999877999999999999999999998776 5786 5777666542 245556777 778899
Q ss_pred EEEEeCCc
Q 040058 187 IVILDDTE 194 (326)
Q Consensus 187 vvIvDD~~ 194 (326)
+|+|+|++
T Consensus 173 ~v~igD~~ 180 (224)
T TIGR02254 173 VLMIGDSL 180 (224)
T ss_pred eEEECCCc
Confidence 99999986
No 52
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=97.00 E-value=0.0011 Score=61.61 Aligned_cols=137 Identities=11% Similarity=0.096 Sum_probs=76.2
Q ss_pred cccCceEEEEeCCCceeeecccCCCCccchhhhcccccc--ccc---eeeccceEEEEeCccHHHHHHHhh-cCceEEEE
Q 040058 64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSF--IGS---LFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLC 137 (326)
Q Consensus 64 ~~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~--~~~---l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~Iy 137 (326)
+.++++.+++|+|+|+++++...-.. .+ .+.....++ ... .+......+..+.||+.+||+.+. +-++|++-
T Consensus 59 ~~~~p~av~~DIDeTvldnsp~~~~~-~~-~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iV 136 (237)
T PRK11009 59 EGRPPMAVGFDIDDTVLFSSPGFWRG-KK-TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFI 136 (237)
T ss_pred cCCCCcEEEEECcCccccCCchheee-ee-ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEE
Confidence 34667899999999999986432111 11 110000000 000 011111334667778999999995 55999999
Q ss_pred cC----CcHHHHHHHHHHhCC-CCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEE
Q 040058 138 TM----STRCYAEAAVKLLDL-DSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 138 T~----g~~~YA~~v~~~LDP-~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~ 206 (326)
|+ ....+++.+++.++- ...+|. -+++.++. ...-|. ..+ .....+|+|.|+..=.......++.
T Consensus 137 TnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~-~K~~K~-~~l-~~~~i~I~IGDs~~Di~aA~~AGi~ 206 (237)
T PRK11009 137 TGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKP-GQYTKT-QWL-KKKNIRIFYGDSDNDITAAREAGAR 206 (237)
T ss_pred eCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCC-CCCCHH-HHH-HhcCCeEEEcCCHHHHHHHHHcCCc
Confidence 99 457789999986665 235675 46655532 111111 111 1233488899986444323334443
No 53
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=97.00 E-value=0.00035 Score=62.97 Aligned_cols=92 Identities=9% Similarity=0.084 Sum_probs=70.7
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
.+.+.||+.++|+.+. +.+.|.|++.+.+++.+++..+-. .+|...+++.++... .+..-+++++..++.+
T Consensus 86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~-~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~ 162 (221)
T PRK10563 86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGML-HYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC 162 (221)
T ss_pred cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChH-HhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 4678899999999994 899999999999999999988776 578655777665542 1344556677788899
Q ss_pred EEEeCCchhhccCCCCeEEeC
Q 040058 188 VILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I~I~ 208 (326)
|+|+|++.-.......++++-
T Consensus 163 l~igDs~~di~aA~~aG~~~i 183 (221)
T PRK10563 163 ILVDDSSAGAQSGIAAGMEVF 183 (221)
T ss_pred EEEeCcHhhHHHHHHCCCEEE
Confidence 999999876654445565543
No 54
>PLN02954 phosphoserine phosphatase
Probab=96.93 E-value=0.00063 Score=61.33 Aligned_cols=50 Identities=18% Similarity=0.382 Sum_probs=41.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC-ccccceEE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS-KYFSSRII 164 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~-~~F~~Ri~ 164 (326)
..++||+.++|+.+.+. +.++|-|++.+.+++.+++.++-.. .+|.+++.
T Consensus 83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~ 134 (224)
T PLN02954 83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL 134 (224)
T ss_pred CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence 56889999999999765 8999999999999999999987542 46765443
No 55
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.89 E-value=0.0026 Score=65.59 Aligned_cols=106 Identities=18% Similarity=0.120 Sum_probs=71.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH--
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-- 142 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-- 142 (326)
.+..++.||+||||+.+..... +..... + |..+-||+.+.|+++.+. |.|+|+|+...
T Consensus 166 ~~~Kia~fD~DGTLi~t~sg~~------~~~~~~-----d--------~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~ 226 (526)
T TIGR01663 166 GQEKIAGFDLDGTIIKTKSGKV------FPKGPD-----D--------WQIIFPEIPEKLKELEADGFKICIFTNQGGIA 226 (526)
T ss_pred ccCcEEEEECCCCccccCCCcc------CCCCHH-----H--------eeecccCHHHHHHHHHHCCCEEEEEECCcccc
Confidence 6678999999999997653211 111100 1 223579999999999876 99999999777
Q ss_pred ----------HHHHHHHHHhCCCCccccceEEeecCCCCC---------ccccCC-CCCCCCCcEEEEeCCc
Q 040058 143 ----------CYAEAAVKLLDLDSKYFSSRIIAREDFNGK---------DRKNPD-LVRGQERGIVILDDTE 194 (326)
Q Consensus 143 ----------~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~---------~~KdL~-~l~~~~~~vvIvDD~~ 194 (326)
..+..+++.++-. |. -+++.+++..+ ..+++. .++.+++..++|.|+.
T Consensus 227 ~G~~~~~~~~~ki~~iL~~lgip---fd-viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa 294 (526)
T TIGR01663 227 RGKINADDFKAKIEAIVAKLGVP---FQ-VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA 294 (526)
T ss_pred cCcccHHHHHHHHHHHHHHcCCc---eE-EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence 5688888888753 65 46655554321 112222 1235788999999997
No 56
>PRK09449 dUMP phosphatase; Provisional
Probab=96.89 E-value=0.0016 Score=58.77 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=63.0
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCC-CCCcE
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRG-QERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~-~~~~v 187 (326)
+.+.||+.++|+.+.+.|.+.|.|++.+.+++.+++.++.. .+|. .+++.++... .+.+-+++++. +.+.+
T Consensus 94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd-~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~ 171 (224)
T PRK09449 94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLR-DYFD-LLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV 171 (224)
T ss_pred CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChH-HHcC-EEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence 57899999999999988999999999999999999998876 5786 5777776543 13445666764 45789
Q ss_pred EEEeCCc
Q 040058 188 VILDDTE 194 (326)
Q Consensus 188 vIvDD~~ 194 (326)
++|+|++
T Consensus 172 ~~vgD~~ 178 (224)
T PRK09449 172 LMVGDNL 178 (224)
T ss_pred EEEcCCc
Confidence 9999996
No 57
>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)
Probab=96.86 E-value=0.0013 Score=60.55 Aligned_cols=95 Identities=15% Similarity=0.101 Sum_probs=66.2
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA 145 (326)
+-..+++|+||||++.. ..-||+.++|+++.+. +.+.|.|++++..+
T Consensus 7 ~~~~~~~D~dG~l~~~~--------------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~ 54 (242)
T TIGR01459 7 DYDVFLLDLWGVIIDGN--------------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIF 54 (242)
T ss_pred cCCEEEEecccccccCC--------------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChH
Confidence 34468899999998764 3579999999999865 99999999999887
Q ss_pred H--HHHHHhCCCCccccceEEeecCCCCCccc-cCCCCCCCCCcEEEEeCCc
Q 040058 146 E--AAVKLLDLDSKYFSSRIIAREDFNGKDRK-NPDLVRGQERGIVILDDTE 194 (326)
Q Consensus 146 ~--~v~~~LDP~~~~F~~Ri~sRd~~~~~~~K-dL~~l~~~~~~vvIvDD~~ 194 (326)
+ +.++.++....+|. -|++.++....+.. -++.++...+.+++|-|++
T Consensus 55 ~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~ 105 (242)
T TIGR01459 55 SLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGIIYLLGHLE 105 (242)
T ss_pred HHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCceEEEeCCcc
Confidence 7 67788877632566 47765543222221 1233444556677777754
No 58
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=96.84 E-value=0.00091 Score=61.13 Aligned_cols=82 Identities=22% Similarity=0.247 Sum_probs=61.7
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------------CccccCCCCCC
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------------KDRKNPDLVRG 182 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------------~~~KdL~~l~~ 182 (326)
+|.-|-|++||-.|.+.+ .++||+|.+..|..+++.|... ..|.+ |++-+-... .+.|-....+-
T Consensus 99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGie-DcFeg-ii~~e~~np~~~~~vcKP~~~afE~a~k~agi 175 (244)
T KOG3109|consen 99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIE-DCFEG-IICFETLNPIEKTVVCKPSEEAFEKAMKVAGI 175 (244)
T ss_pred cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChH-Hhccc-eeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence 677778999999999888 9999999999999999999998 45874 654443321 12233333444
Q ss_pred -CCCcEEEEeCCchhhcc
Q 040058 183 -QERGIVILDDTESVWSD 199 (326)
Q Consensus 183 -~~~~vvIvDD~~~vw~~ 199 (326)
++.+++++||+......
T Consensus 176 ~~p~~t~FfDDS~~NI~~ 193 (244)
T KOG3109|consen 176 DSPRNTYFFDDSERNIQT 193 (244)
T ss_pred CCcCceEEEcCchhhHHH
Confidence 48899999999876643
No 59
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=96.84 E-value=0.0011 Score=61.12 Aligned_cols=92 Identities=15% Similarity=0.021 Sum_probs=70.1
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCC-CCCc
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRG-QERG 186 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~-~~~~ 186 (326)
+.+.||+.++|+.+.+. +.+.|-|++++.+++.+++.++-.+ +|.+.+++.++... .+.+-+++++. +++.
T Consensus 98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~ 176 (253)
T TIGR01422 98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA 176 (253)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence 57899999999999765 9999999999999999999988774 55346888777542 24455666776 4889
Q ss_pred EEEEeCCchhhccCCCCeEEe
Q 040058 187 IVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I 207 (326)
+|+|.|++.-......+++..
T Consensus 177 ~l~IGDs~~Di~aA~~aGi~~ 197 (253)
T TIGR01422 177 CVKVGDTVPDIEEGRNAGMWT 197 (253)
T ss_pred eEEECCcHHHHHHHHHCCCeE
Confidence 999999985444334555544
No 60
>PRK08238 hypothetical protein; Validated
Probab=96.74 E-value=0.0015 Score=66.65 Aligned_cols=86 Identities=23% Similarity=0.347 Sum_probs=60.3
Q ss_pred EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC--ccccC---CCCCCCCCcEEE
Q 040058 116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK--DRKNP---DLVRGQERGIVI 189 (326)
Q Consensus 116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~--~~KdL---~~l~~~~~~vvI 189 (326)
..+|++.++|+++.+. +.+.|-|++.+.+++++++.++- |. .+++.++.... ..|-. +.+ +.+.++.
T Consensus 72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd-~Vigsd~~~~~kg~~K~~~l~~~l--~~~~~~y 144 (479)
T PRK08238 72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FD-GVFASDGTTNLKGAAKAAALVEAF--GERGFDY 144 (479)
T ss_pred CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CC-EEEeCCCccccCCchHHHHHHHHh--CccCeeE
Confidence 5889999999999765 99999999999999999998854 65 57765544321 11211 112 2345778
Q ss_pred EeCCc---hhhccCCCCeEEeCc
Q 040058 190 LDDTE---SVWSDHTENLIVLGK 209 (326)
Q Consensus 190 vDD~~---~vw~~~~~N~I~I~~ 209 (326)
+.|+. .+|.. -+|.+.|.|
T Consensus 145 vGDS~~Dlp~~~~-A~~av~Vn~ 166 (479)
T PRK08238 145 AGNSAADLPVWAA-ARRAIVVGA 166 (479)
T ss_pred ecCCHHHHHHHHh-CCCeEEECC
Confidence 88887 46654 567777764
No 61
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=96.72 E-value=0.0011 Score=59.80 Aligned_cols=91 Identities=20% Similarity=0.148 Sum_probs=70.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
..+.||+.++|+.+.+. +.++|.|++.+..++.+++.++-. .+|. .+++.++... .+..-++.++.+++.+
T Consensus 91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~ 168 (222)
T PRK10826 91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR-DYFD-ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC 168 (222)
T ss_pred CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch-hccc-EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence 57889999999999865 999999999999999999998876 5787 5777776532 2344456677888999
Q ss_pred EEEeCCchhhccCCCCeEEe
Q 040058 188 VILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I~I 207 (326)
++|+|+..-.......+++.
T Consensus 169 ~~igDs~~Di~aA~~aG~~~ 188 (222)
T PRK10826 169 VALEDSFNGMIAAKAARMRS 188 (222)
T ss_pred EEEcCChhhHHHHHHcCCEE
Confidence 99999996665434445443
No 62
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=96.69 E-value=0.001 Score=58.20 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=67.3
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV 188 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv 188 (326)
+.+-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.++-. .||. .|++.++... .+..-+++++.+++.+|
T Consensus 87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~-~~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l 163 (188)
T PRK10725 87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLR-RYFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV 163 (188)
T ss_pred CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcH-hHce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence 4566864 899999877999999999999999999998876 5787 5888877643 13444556777888999
Q ss_pred EEeCCchhhccCCCCeEE
Q 040058 189 ILDDTESVWSDHTENLIV 206 (326)
Q Consensus 189 IvDD~~~vw~~~~~N~I~ 206 (326)
+|+|++.-......++++
T Consensus 164 ~igDs~~di~aA~~aG~~ 181 (188)
T PRK10725 164 VFEDADFGIQAARAAGMD 181 (188)
T ss_pred EEeccHhhHHHHHHCCCE
Confidence 999997655443444443
No 63
>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1. The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....
Probab=96.58 E-value=0.0053 Score=45.61 Aligned_cols=45 Identities=18% Similarity=0.202 Sum_probs=32.8
Q ss_pred hccC-CCcEEEEcCccch---HHHHHHH----------------------------HHHhhhCCceEEchHHHHHHH
Q 040058 269 RSEF-SRDVLYFSAIFRD---CLWAEQE----------------------------EKFLVQEKKFLVHPRWIDAYY 313 (326)
Q Consensus 269 r~~v-~g~~ivfs~~~p~---~~~~~ae----------------------------a~~a~~~~~~vV~p~Wl~~~~ 313 (326)
+..+ +||.++|++.-+. .+.++++ .+.|...|+++|+|.||.+|+
T Consensus 2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci 78 (78)
T PF00533_consen 2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI 78 (78)
T ss_dssp STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence 3566 8888888544333 5666665 245677899999999999995
No 64
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=96.57 E-value=0.0023 Score=58.40 Aligned_cols=91 Identities=11% Similarity=0.020 Sum_probs=69.2
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. +.+.|-|++...++..+++.++-. .+|. .+++.++.... +.+-+++++.+++.
T Consensus 93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~ 170 (229)
T PRK13226 93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE-QRCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD 170 (229)
T ss_pred cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch-hccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence 468999999999999866 899999999999999999988776 4676 46666654321 44556667888899
Q ss_pred EEEEeCCchhhccCCCCeEE
Q 040058 187 IVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~ 206 (326)
+++|+|++.-.......++.
T Consensus 171 ~l~IGDs~~Di~aA~~aG~~ 190 (229)
T PRK13226 171 CVYVGDDERDILAARAAGMP 190 (229)
T ss_pred EEEeCCCHHHHHHHHHCCCc
Confidence 99999998655433344443
No 65
>PRK11587 putative phosphatase; Provisional
Probab=96.54 E-value=0.0029 Score=57.15 Aligned_cols=90 Identities=13% Similarity=0.019 Sum_probs=66.4
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
.+.+.||+.++|+.+.+. +.+.|-|++++.++..+++...-. +|. -+++.++... .+.+-+++++..++.
T Consensus 81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~-~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~ 157 (218)
T PRK11587 81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APE-VFVTAERVKRGKPEPDAYLLGAQLLGLAPQE 157 (218)
T ss_pred CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Ccc-EEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence 467899999999999755 999999999999988888766642 354 4777665432 245556677888999
Q ss_pred EEEEeCCchhhccCCCCeEE
Q 040058 187 IVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~ 206 (326)
+++|+|++.-.......++.
T Consensus 158 ~l~igDs~~di~aA~~aG~~ 177 (218)
T PRK11587 158 CVVVEDAPAGVLSGLAAGCH 177 (218)
T ss_pred EEEEecchhhhHHHHHCCCE
Confidence 99999998544433444544
No 66
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=96.51 E-value=0.0041 Score=55.72 Aligned_cols=83 Identities=14% Similarity=0.180 Sum_probs=64.7
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~ 186 (326)
...++||+.+||+.+.+. +.++|.|++.+.++..+++.++-. .+|. .+++.++.... +.+-+++++.+.+.
T Consensus 91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~ 168 (226)
T PRK13222 91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEE 168 (226)
T ss_pred cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCcc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence 467999999999999865 999999999999999999998876 5676 57766554321 23344566778899
Q ss_pred EEEEeCCchhhc
Q 040058 187 IVILDDTESVWS 198 (326)
Q Consensus 187 vvIvDD~~~vw~ 198 (326)
+++|+|++.-..
T Consensus 169 ~i~igD~~~Di~ 180 (226)
T PRK13222 169 MLFVGDSRNDIQ 180 (226)
T ss_pred eEEECCCHHHHH
Confidence 999999975443
No 67
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=96.50 E-value=0.0039 Score=55.95 Aligned_cols=81 Identities=15% Similarity=0.092 Sum_probs=66.8
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV 188 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv 188 (326)
+..-|++.++|+.+.+.|.+.|.|||...++...++.+.- ..+|.. +++.++.+. .+..-+++++.+++.++
T Consensus 98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl-~~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l 175 (229)
T COG1011 98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGL-LDYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEAL 175 (229)
T ss_pred CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCC-hhhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence 6889999999999998899999999999999999999884 478985 666676652 14445666788899999
Q ss_pred EEeCCchhh
Q 040058 189 ILDDTESVW 197 (326)
Q Consensus 189 IvDD~~~vw 197 (326)
.|||+...-
T Consensus 176 ~VgD~~~~d 184 (229)
T COG1011 176 FVGDSLEND 184 (229)
T ss_pred EECCChhhh
Confidence 999998644
No 68
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=96.47 E-value=0.0015 Score=56.66 Aligned_cols=87 Identities=16% Similarity=0.227 Sum_probs=63.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
+.+.||+.++|+.+.+. +.+.|.|++ .+++.+++.++-. .+|.. +++.++... .+.+-+++++..++.+
T Consensus 87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~~-v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~ 162 (185)
T TIGR02009 87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFDA-IVDADEVKEGKPHPETFLLAAELLGVSPNEC 162 (185)
T ss_pred CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCCE-eeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence 67999999999999765 999999988 7899999987776 57874 666555432 1334455667778899
Q ss_pred EEEeCCchhhccCCCCeE
Q 040058 188 VILDDTESVWSDHTENLI 205 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I 205 (326)
|+|+|++.-......+++
T Consensus 163 v~IgD~~~di~aA~~~G~ 180 (185)
T TIGR02009 163 VVFEDALAGVQAARAAGM 180 (185)
T ss_pred EEEeCcHhhHHHHHHCCC
Confidence 999999754433333444
No 69
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=96.43 E-value=0.0034 Score=54.06 Aligned_cols=103 Identities=13% Similarity=0.085 Sum_probs=66.2
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..++||+||||+.....- ... . .. .-++.++|+. -|+++.+. +.+.|.|++.+..+..
T Consensus 2 ~~~~~D~Dgtl~~~~~~~--~~~--------~---~~------~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~ 60 (154)
T TIGR01670 2 RLLILDVDGVLTDGKIYY--TNN--------G---EE------IKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVED 60 (154)
T ss_pred eEEEEeCceeEEcCeEEE--CCC--------C---cE------EEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHH
Confidence 367899999999642210 000 0 00 1123678876 68888765 9999999999999999
Q ss_pred HHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhh
Q 040058 148 AVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVW 197 (326)
Q Consensus 148 v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw 197 (326)
+++.+... .+|... ..-.....+-++.++-+++.++.|-|+..=.
T Consensus 61 ~l~~~gi~-~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~ 105 (154)
T TIGR01670 61 RCKTLGIT-HLYQGQ----SNKLIAFSDILEKLALAPENVAYIGDDLIDW 105 (154)
T ss_pred HHHHcCCC-EEEecc----cchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence 99998876 455421 1111112233345566778899999987433
No 70
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=96.42 E-value=0.0018 Score=57.61 Aligned_cols=95 Identities=13% Similarity=-0.011 Sum_probs=68.0
Q ss_pred EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058 113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER 185 (326)
Q Consensus 113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~ 185 (326)
++..+.||+.++|+.+.+. |.++|-|++.+..+...+.....-..+|. .+++.++.+. .+..-+++++.+++
T Consensus 81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~ 159 (199)
T PRK09456 81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSAA 159 (199)
T ss_pred HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC-EEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence 4467899999999999765 99999999998876655433211235676 5777676653 14555677888999
Q ss_pred cEEEEeCCchhhccCCCCeEEeC
Q 040058 186 GIVILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 186 ~vvIvDD~~~vw~~~~~N~I~I~ 208 (326)
.+++|||++.-.......++..-
T Consensus 160 ~~l~vgD~~~di~aA~~aG~~~i 182 (199)
T PRK09456 160 DAVFFDDNADNIEAANALGITSI 182 (199)
T ss_pred HeEEeCCCHHHHHHHHHcCCEEE
Confidence 99999999865544455666553
No 71
>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []. ; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....
Probab=96.24 E-value=0.0059 Score=53.22 Aligned_cols=53 Identities=19% Similarity=0.152 Sum_probs=34.7
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS 140 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g 140 (326)
+++.+|||||||.+......+. ... + +..+-|++.+-|+++.+. |.|+|+|+.
T Consensus 1 Kia~fD~DgTLi~~~s~~~f~~------~~~-----D--------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ 54 (159)
T PF08645_consen 1 KIAFFDLDGTLIKTKSGKKFPK------DPD-----D--------WKFFPPGVPEALRELHKKGYKIVIVTNQ 54 (159)
T ss_dssp SEEEE-SCTTTEE-STSTTS-S------STC-----G--------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred CEEEEeCCCCccCCCCCCcCcC------CHH-----H--------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence 3688999999999975432111 011 1 234667999999999875 999999986
No 72
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=96.22 E-value=0.0045 Score=58.30 Aligned_cols=90 Identities=16% Similarity=0.132 Sum_probs=67.4
Q ss_pred EEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v 187 (326)
+.++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-. .+|. .+++.++.... +.+-+++++.+++.+
T Consensus 100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~ 177 (272)
T PRK13223 100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS 177 (272)
T ss_pred CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence 5689999999999975 4999999999999999999988765 5786 57776665431 223344567788999
Q ss_pred EEEeCCchhhccCCCCeEE
Q 040058 188 VILDDTESVWSDHTENLIV 206 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I~ 206 (326)
++|+|+..-......+++.
T Consensus 178 l~IGD~~~Di~aA~~aGi~ 196 (272)
T PRK13223 178 LFVGDSRSDVLAAKAAGVQ 196 (272)
T ss_pred EEECCCHHHHHHHHHCCCe
Confidence 9999997544433445543
No 73
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=96.14 E-value=0.0049 Score=58.53 Aligned_cols=92 Identities=14% Similarity=0.140 Sum_probs=65.2
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccc-eEEeecCCCC------CccccCCCCCCCCCc
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSS-RIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~-Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
+++.||+.++|+.+.+. +.+.|.|++++.++..+++.+.-. .+|.. .+++.+++.. .+.+-++.++.+++.
T Consensus 143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~ 221 (286)
T PLN02779 143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR 221 (286)
T ss_pred CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence 57899999999999765 999999999999999999876311 23331 2335555432 133445667778899
Q ss_pred EEEEeCCchhhccCCCCeEEe
Q 040058 187 IVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I 207 (326)
+++|+|++.-......+++.+
T Consensus 222 ~l~IGDs~~Di~aA~~aG~~~ 242 (286)
T PLN02779 222 CVVVEDSVIGLQAAKAAGMRC 242 (286)
T ss_pred EEEEeCCHHhHHHHHHcCCEE
Confidence 999999987665444455443
No 74
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=96.13 E-value=0.013 Score=51.64 Aligned_cols=111 Identities=17% Similarity=0.261 Sum_probs=82.6
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.+-..+|+|||+|||-=.. + ..-|-+++-+.++.+. -.+.|.+|+++.-
T Consensus 26 ~Gikgvi~DlDNTLv~wd~-~-----------------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R 75 (175)
T COG2179 26 HGIKGVILDLDNTLVPWDN-P-----------------------------DATPELRAWLAELKEAGIKVVVVSNNKESR 75 (175)
T ss_pred cCCcEEEEeccCceecccC-C-----------------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHH
Confidence 7788999999999995431 1 2567788889999876 8999999999999
Q ss_pred HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc--hhhccCCCC--eEEeCccc
Q 040058 145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE--SVWSDHTEN--LIVLGKYV 211 (326)
Q Consensus 145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~vw~~~~~N--~I~I~~y~ 211 (326)
+..+++.||-+.- ++ .+.-.+..+.|.|..++-+.+.|++|-|+- |+...|..+ .|.|+|-.
T Consensus 76 V~~~~~~l~v~fi-~~----A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~ 141 (175)
T COG2179 76 VARAAEKLGVPFI-YR----AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV 141 (175)
T ss_pred HHhhhhhcCCcee-ec----ccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence 9999999997721 11 111122235677777888999999999996 677655433 57777765
No 75
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=96.12 E-value=0.011 Score=52.31 Aligned_cols=77 Identities=14% Similarity=0.011 Sum_probs=60.5
Q ss_pred EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcEEE
Q 040058 116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGIVI 189 (326)
Q Consensus 116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~vvI 189 (326)
+..|+..++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++... .+.+-++.++.+.+.+++
T Consensus 106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~ 183 (197)
T TIGR01548 106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAM 183 (197)
T ss_pred ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence 3455669999999865 999999999999999999999876 6786 5777666432 133445567778889999
Q ss_pred EeCCc
Q 040058 190 LDDTE 194 (326)
Q Consensus 190 vDD~~ 194 (326)
|+|++
T Consensus 184 vGD~~ 188 (197)
T TIGR01548 184 VGDTV 188 (197)
T ss_pred EeCCH
Confidence 99997
No 76
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=96.12 E-value=0.0067 Score=56.58 Aligned_cols=92 Identities=17% Similarity=0.081 Sum_probs=67.9
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCC-CCc
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQ-ERG 186 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~-~~~ 186 (326)
+.+-||+.++|+.+.+. +.+.|-|++.+..++.+++.+.-.+ +|.+.+++.++... .+.+-+++++.. .+.
T Consensus 100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e 178 (267)
T PRK13478 100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA 178 (267)
T ss_pred CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence 57889999999999765 9999999999999999999877654 44345777776542 134555667764 688
Q ss_pred EEEEeCCchhhccCCCCeEEe
Q 040058 187 IVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 187 vvIvDD~~~vw~~~~~N~I~I 207 (326)
+|+|+|++.-.......++..
T Consensus 179 ~l~IGDs~~Di~aA~~aG~~~ 199 (267)
T PRK13478 179 CVKVDDTVPGIEEGLNAGMWT 199 (267)
T ss_pred eEEEcCcHHHHHHHHHCCCEE
Confidence 999999985554334455543
No 77
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=96.10 E-value=0.012 Score=49.59 Aligned_cols=78 Identities=9% Similarity=0.089 Sum_probs=58.4
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcE
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGI 187 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~v 187 (326)
.....||+.++|+.+.+. +.+.|.|++.+..+...++.+ - ..+|. .+++.++... .+.+-+++++.+. .+
T Consensus 62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~ 137 (154)
T TIGR01549 62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EV 137 (154)
T ss_pred hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CE
Confidence 344569999999999654 999999999999999999985 2 35676 5777776542 1333345566667 89
Q ss_pred EEEeCCch
Q 040058 188 VILDDTES 195 (326)
Q Consensus 188 vIvDD~~~ 195 (326)
++|+|++.
T Consensus 138 l~iGDs~~ 145 (154)
T TIGR01549 138 LHVGDNLN 145 (154)
T ss_pred EEEeCCHH
Confidence 99999963
No 78
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=96.03 E-value=0.0042 Score=53.90 Aligned_cols=87 Identities=14% Similarity=0.176 Sum_probs=61.8
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
..+.||+.++|+.+.+. +.+.|-|++. .+..+++.++-. .+|. .+++.++... .+.+-+++++.+++.+
T Consensus 86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~ 161 (185)
T TIGR01990 86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFD-AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC 161 (185)
T ss_pred cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCc-EEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence 46889999999999755 9999999875 356788888766 5786 4665555432 1445566677788899
Q ss_pred EEEeCCchhhccCCCCeE
Q 040058 188 VILDDTESVWSDHTENLI 205 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I 205 (326)
|+|+|++.-......+++
T Consensus 162 v~vgD~~~di~aA~~aG~ 179 (185)
T TIGR01990 162 IGIEDAQAGIEAIKAAGM 179 (185)
T ss_pred EEEecCHHHHHHHHHcCC
Confidence 999999754433333443
No 79
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=96.03 E-value=0.01 Score=52.50 Aligned_cols=77 Identities=9% Similarity=0.070 Sum_probs=58.9
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
+.+-||+.++|+.+++. +.+.|.|++.+.. ..+++.++-. .+|. .+++.++.+. .+.+-++.++.+++.+
T Consensus 104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~ 180 (203)
T TIGR02252 104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFD-FVVTSYEVGAEKPDPKIFQEALERAGISPEEA 180 (203)
T ss_pred ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcc-eEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence 36889999999999875 9999999998764 6777777654 5786 4666565542 1344556678889999
Q ss_pred EEEeCCc
Q 040058 188 VILDDTE 194 (326)
Q Consensus 188 vIvDD~~ 194 (326)
++|+|++
T Consensus 181 ~~IgD~~ 187 (203)
T TIGR02252 181 LHIGDSL 187 (203)
T ss_pred EEECCCc
Confidence 9999986
No 80
>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase. This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.
Probab=95.94 E-value=0.0067 Score=55.70 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=63.6
Q ss_pred EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhC---CCCccccceEEeecCCCC----CccccCCCCCCCCC
Q 040058 114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLD---LDSKYFSSRIIAREDFNG----KDRKNPDLVRGQER 185 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LD---P~~~~F~~Ri~sRd~~~~----~~~KdL~~l~~~~~ 185 (326)
...+.||+.++|+.+.+ .+.++|+|+++..+...+++..+ -. .+|.. ++....+.. .+.+-++.++.+++
T Consensus 93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p~ 170 (220)
T TIGR01691 93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPPR 170 (220)
T ss_pred ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcChh
Confidence 35689999999999975 49999999999999998887753 22 35653 342211111 25556677788899
Q ss_pred cEEEEeCCchhhccCCCCeEE
Q 040058 186 GIVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 186 ~vvIvDD~~~vw~~~~~N~I~ 206 (326)
.+++|+|+..-.......++.
T Consensus 171 e~lfVgDs~~Di~AA~~AG~~ 191 (220)
T TIGR01691 171 EILFLSDIINELDAARKAGLH 191 (220)
T ss_pred HEEEEeCCHHHHHHHHHcCCE
Confidence 999999998655433344443
No 81
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=95.93 E-value=0.0053 Score=56.07 Aligned_cols=83 Identities=20% Similarity=0.193 Sum_probs=69.8
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG 186 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~ 186 (326)
-++..||+.+||+++... .-+.+-|++.+.-++.+++.+... .+|...+. +++... .|.+-+++|+.+++.
T Consensus 84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~-~~f~~~v~-~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~ 161 (221)
T COG0637 84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL-DYFDVIVT-ADDVARGKPAPDIYLLAAERLGVDPEE 161 (221)
T ss_pred CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh-hhcchhcc-HHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence 468999999999999988 999999999999999999999887 57886444 565543 267778889999999
Q ss_pred EEEEeCCchhhc
Q 040058 187 IVILDDTESVWS 198 (326)
Q Consensus 187 vvIvDD~~~vw~ 198 (326)
+|+|+|++.--.
T Consensus 162 CvviEDs~~Gi~ 173 (221)
T COG0637 162 CVVVEDSPAGIQ 173 (221)
T ss_pred eEEEecchhHHH
Confidence 999999986554
No 82
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=95.92 E-value=0.015 Score=46.76 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=36.5
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc----HHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST----RCYA 145 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~----~~YA 145 (326)
+++|+||||++.. ..=||+.+||+.+.+. ..+++.||++ .+|+
T Consensus 1 ~l~D~dGvl~~g~--------------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~ 48 (101)
T PF13344_consen 1 FLFDLDGVLYNGN--------------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYA 48 (101)
T ss_dssp EEEESTTTSEETT--------------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHH
T ss_pred CEEeCccEeEeCC--------------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence 5799999999853 3569999999999877 9999999998 4555
Q ss_pred HHH
Q 040058 146 EAA 148 (326)
Q Consensus 146 ~~v 148 (326)
+..
T Consensus 49 ~~L 51 (101)
T PF13344_consen 49 KKL 51 (101)
T ss_dssp HHH
T ss_pred HHH
Confidence 555
No 83
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=95.92 E-value=0.0074 Score=52.98 Aligned_cols=82 Identities=15% Similarity=0.176 Sum_probs=59.6
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC---C------ccc--c----C
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG---K------DRK--N----P 177 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---~------~~K--d----L 177 (326)
.+.++||+.++|+.+.+. +.++|.|++.+.+++.+++.+... .+|.+.+.+.+.... . ..| - +
T Consensus 78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~ 156 (201)
T TIGR01491 78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK 156 (201)
T ss_pred hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence 357899999999999755 999999999999999999999876 567766654332110 0 011 1 2
Q ss_pred CCCCCCCCcEEEEeCCchh
Q 040058 178 DLVRGQERGIVILDDTESV 196 (326)
Q Consensus 178 ~~l~~~~~~vvIvDD~~~v 196 (326)
+.++.+.+.+++|.|+..-
T Consensus 157 ~~~~~~~~~~i~iGDs~~D 175 (201)
T TIGR01491 157 RELNPSLTETVAVGDSKND 175 (201)
T ss_pred HHhCCCHHHEEEEcCCHhH
Confidence 2345567889999999743
No 84
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=95.84 E-value=0.0081 Score=54.82 Aligned_cols=50 Identities=10% Similarity=0.172 Sum_probs=44.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA 165 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s 165 (326)
++++||+.+.++.+.+. +.++|.|.|-..++++|++.+.-+ ..+.+++..
T Consensus 76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d-~~~an~l~~ 126 (212)
T COG0560 76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID-YVVANELEI 126 (212)
T ss_pred CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc-hheeeEEEE
Confidence 89999999999999877 999999999999999999999988 456665553
No 85
>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A.
Probab=95.79 E-value=0.014 Score=42.45 Aligned_cols=34 Identities=24% Similarity=0.192 Sum_probs=27.2
Q ss_pred cEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHH
Q 040058 275 DVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRW 308 (326)
Q Consensus 275 ~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~W 308 (326)
+.|.|||+.|. .++++++ .+.|++.|++||+|+|
T Consensus 1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W 63 (63)
T PF12738_consen 1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW 63 (63)
T ss_dssp -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence 46888998886 7888877 3578999999999999
No 86
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=95.75 E-value=0.0042 Score=55.52 Aligned_cols=92 Identities=17% Similarity=0.011 Sum_probs=61.0
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH--HHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCC
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY--AEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQE 184 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y--A~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~ 184 (326)
.+.+.||+.++|+.+.+. |.+.|.|++...+ +......++-. .+|. .+++.++... .+.+-+++++.++
T Consensus 92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~g~~~ 169 (211)
T TIGR02247 92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFD-AVVESCLEGLRKPDPRIYQLMLERLGVAP 169 (211)
T ss_pred ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCC-EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence 467899999999999865 9999999997655 32222222222 5676 4665554432 2445566778888
Q ss_pred CcEEEEeCCchhhccCCCCeEEe
Q 040058 185 RGIVILDDTESVWSDHTENLIVL 207 (326)
Q Consensus 185 ~~vvIvDD~~~vw~~~~~N~I~I 207 (326)
+.+++|||++.-.......++..
T Consensus 170 ~~~l~i~D~~~di~aA~~aG~~~ 192 (211)
T TIGR02247 170 EECVFLDDLGSNLKPAAALGITT 192 (211)
T ss_pred HHeEEEcCCHHHHHHHHHcCCEE
Confidence 99999999986554333445543
No 87
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=95.54 E-value=0.0038 Score=53.91 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=59.0
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
.+.+.||+.++|+. +.|.|++.+.++..+++.+.-. .+|.. +++.++... .+.+-+++++.+++.+
T Consensus 88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~ 159 (175)
T TIGR01493 88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFDR-AFSVDTVRAYKPDPVVYELVFDTVGLPPDRV 159 (175)
T ss_pred cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHhh-hccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence 35689999999993 7899999999999999998765 67874 777776442 1455567778889999
Q ss_pred EEEeCCc
Q 040058 188 VILDDTE 194 (326)
Q Consensus 188 vIvDD~~ 194 (326)
++|+|++
T Consensus 160 l~vgD~~ 166 (175)
T TIGR01493 160 LMVAAHQ 166 (175)
T ss_pred EeEecCh
Confidence 9999995
No 88
>PLN02811 hydrolase
Probab=95.46 E-value=0.0089 Score=54.08 Aligned_cols=91 Identities=9% Similarity=0.066 Sum_probs=61.4
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH-HHHHhCCCCccccceEEeec--CCCC------CccccCCCCC--
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA-AVKLLDLDSKYFSSRIIARE--DFNG------KDRKNPDLVR-- 181 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~-v~~~LDP~~~~F~~Ri~sRd--~~~~------~~~KdL~~l~-- 181 (326)
.+.+.||+.++|+.+++. +.+.|-|++.+.+... ..+..... .+|. .+++.+ +... .+.+-+++++
T Consensus 76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~-~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~ 153 (220)
T PLN02811 76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMH-HVVTGDDPEVKQGKPAPDIFLAAARRFEDG 153 (220)
T ss_pred hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCC-EEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence 356789999999999875 9999999999876654 33222222 4676 577777 5432 1344455554
Q ss_pred -CCCCcEEEEeCCchhhccCCCCeEE
Q 040058 182 -GQERGIVILDDTESVWSDHTENLIV 206 (326)
Q Consensus 182 -~~~~~vvIvDD~~~vw~~~~~N~I~ 206 (326)
..++.+|+|+|+..-......++++
T Consensus 154 ~~~~~~~v~IgDs~~di~aA~~aG~~ 179 (220)
T PLN02811 154 PVDPGKVLVFEDAPSGVEAAKNAGMS 179 (220)
T ss_pred CCCccceEEEeccHhhHHHHHHCCCe
Confidence 6788999999998655433344444
No 89
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=95.40 E-value=0.036 Score=39.31 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=17.2
Q ss_pred HHhhhCCceEEchHHHHHHH
Q 040058 294 KFLVQEKKFLVHPRWIDAYY 313 (326)
Q Consensus 294 ~~a~~~~~~vV~p~Wl~~~~ 313 (326)
+.|...|+.||++.||.+|+
T Consensus 52 ~~~~~~~~~iV~~~Wi~~~~ 71 (72)
T cd00027 52 LKAIKLGIPIVTPEWLLDCL 71 (72)
T ss_pred HHHHHcCCeEecHHHHHHHh
Confidence 35667899999999999996
No 90
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=95.39 E-value=0.036 Score=46.68 Aligned_cols=72 Identities=19% Similarity=0.148 Sum_probs=49.8
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHH--
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAE-- 146 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~-- 146 (326)
.+++||||||++....+ +. .....|.+.+.|+++. +-+++++.|+-......
T Consensus 3 ~i~~DiDGTL~~~~~~~-------y~------------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n 57 (126)
T TIGR01689 3 RLVMDLDNTITLTENGD-------YA------------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGN 57 (126)
T ss_pred EEEEeCCCCcccCCCCc-------cc------------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhcc
Confidence 68999999997653111 00 1247888999999984 56999999988877766
Q ss_pred ----------HHHHHhCCCCccccceEEeec
Q 040058 147 ----------AAVKLLDLDSKYFSSRIIARE 167 (326)
Q Consensus 147 ----------~v~~~LDP~~~~F~~Ri~sRd 167 (326)
.+.+.|+-.+--|. .|+-|-
T Consensus 58 ~~~i~~~~~~~t~~wL~k~~ipYd-~l~~~k 87 (126)
T TIGR01689 58 VGKINIHTLPIIILWLNQHNVPYD-EIYVGK 87 (126)
T ss_pred ccccchhhHHHHHHHHHHcCCCCc-eEEeCC
Confidence 67777877654443 455333
No 91
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=95.33 E-value=0.033 Score=50.27 Aligned_cols=51 Identities=8% Similarity=0.145 Sum_probs=42.8
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII 164 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~ 164 (326)
.+.+|||+.+||+.+.+. ..++|.|+|.+.|++++++.+.+...++.+++.
T Consensus 68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~ 119 (214)
T TIGR03333 68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD 119 (214)
T ss_pred cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence 478999999999999876 999999999999999999988655445554444
No 92
>smart00292 BRCT breast cancer carboxy-terminal domain.
Probab=95.20 E-value=0.038 Score=40.18 Aligned_cols=23 Identities=9% Similarity=0.011 Sum_probs=18.6
Q ss_pred HHhhhCCceEEchHHHHHHHHHh
Q 040058 294 KFLVQEKKFLVHPRWIDAYYFLW 316 (326)
Q Consensus 294 ~~a~~~~~~vV~p~Wl~~~~~~w 316 (326)
+.|...+++||+|.||.+|+..|
T Consensus 58 ~~~~~~~~~iV~~~Wi~~~~~~~ 80 (80)
T smart00292 58 LLAIALGIPIVTEDWLLDCLKAG 80 (80)
T ss_pred HHHHHcCCCCccHHHHHHHHHCc
Confidence 34556789999999999998754
No 93
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=95.11 E-value=0.02 Score=57.91 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=64.7
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcE
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGI 187 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~v 187 (326)
.+.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++-. .||. .+++.++... .+.+-++.+ +++.+
T Consensus 328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~-~~f~-~i~~~d~v~~~~kP~~~~~al~~l--~~~~~ 403 (459)
T PRK06698 328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD-QWVT-ETFSIEQINSLNKSDLVKSILNKY--DIKEA 403 (459)
T ss_pred CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH-hhcc-eeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence 367899999999999755 999999999999999999998876 5787 4777766532 122223333 35789
Q ss_pred EEEeCCchhhccCCCCeEE
Q 040058 188 VILDDTESVWSDHTENLIV 206 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~I~ 206 (326)
++|.|++.=.......++.
T Consensus 404 v~VGDs~~Di~aAk~AG~~ 422 (459)
T PRK06698 404 AVVGDRLSDINAAKDNGLI 422 (459)
T ss_pred EEEeCCHHHHHHHHHCCCe
Confidence 9999998544333344443
No 94
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=95.11 E-value=0.015 Score=51.47 Aligned_cols=104 Identities=12% Similarity=0.036 Sum_probs=62.1
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCcc-HHHHHHHhhcCceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPF-VRTFLEQASSLVDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPg-l~eFL~~ls~~yEl~IyT~g~~~Y 144 (326)
.+...+++|+||||+.....-. ... ..+ ..+.. |.+ .-+.|+ .+.+++.|.|+.....
T Consensus 19 ~~ikli~~D~Dgtl~~~~i~~~-~~~------------~~~-----~~~~~-~d~~~i~~L~--~~Gi~v~I~T~~~~~~ 77 (183)
T PRK09484 19 ENIRLLICDVDGVFSDGLIYMG-NNG------------EEL-----KAFNV-RDGYGIRCLL--TSGIEVAIITGRKSKL 77 (183)
T ss_pred hCceEEEEcCCeeeecCEEEEc-CCC------------CEE-----EEEec-cchHHHHHHH--HCCCEEEEEeCCCcHH
Confidence 4577899999999998742110 000 000 11112 222 222333 2569999999999999
Q ss_pred HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058 145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES 195 (326)
Q Consensus 145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~ 195 (326)
+..+++.+.-. .+|.+ .++-.....+-++.++.+.+.+++|-|+..
T Consensus 78 v~~~l~~lgl~-~~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~ 123 (183)
T PRK09484 78 VEDRMTTLGIT-HLYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLI 123 (183)
T ss_pred HHHHHHHcCCc-eeecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence 99999998765 35542 111111223334456777889999988874
No 95
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=95.04 E-value=0.049 Score=50.98 Aligned_cols=57 Identities=26% Similarity=0.267 Sum_probs=47.0
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE 146 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~ 146 (326)
...+++||||||+++.. ...|...+.|+.+.+. +.++|.|.-....+.
T Consensus 4 ~kli~~DlDGTLl~~~~-------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~ 52 (273)
T PRK00192 4 KLLVFTDLDGTLLDHHT-------------------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVE 52 (273)
T ss_pred ceEEEEcCcccCcCCCC-------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 45789999999997531 2446788899999876 899999999999999
Q ss_pred HHHHHhCCC
Q 040058 147 AAVKLLDLD 155 (326)
Q Consensus 147 ~v~~~LDP~ 155 (326)
.+++.++..
T Consensus 53 ~~~~~l~l~ 61 (273)
T PRK00192 53 VLRKELGLE 61 (273)
T ss_pred HHHHHcCCC
Confidence 999988755
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=94.91 E-value=0.028 Score=62.67 Aligned_cols=81 Identities=12% Similarity=0.154 Sum_probs=65.9
Q ss_pred eCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEEE
Q 040058 117 LRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVI 189 (326)
Q Consensus 117 lRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvI 189 (326)
+.||+.++|++|.+. |.+.|.|++.+.+++.+++.++-...+|. .+++.++... .+.+-+++++.+++.+|+
T Consensus 162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd-~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~ 240 (1057)
T PLN02919 162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD-AIVSADAFENLKPAPDIFLAAAKILGVPTSECVV 240 (1057)
T ss_pred cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC-EEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence 689999999999765 99999999999999999998876546787 5777776653 245556777888999999
Q ss_pred EeCCchhhc
Q 040058 190 LDDTESVWS 198 (326)
Q Consensus 190 vDD~~~vw~ 198 (326)
|+|++.-..
T Consensus 241 IgDs~~Di~ 249 (1057)
T PLN02919 241 IEDALAGVQ 249 (1057)
T ss_pred EcCCHHHHH
Confidence 999985554
No 97
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=94.90 E-value=0.03 Score=49.55 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=56.1
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecC-------CCCCccc--cCCCCCCCC
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED-------FNGKDRK--NPDLVRGQE 184 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~-------~~~~~~K--dL~~l~~~~ 184 (326)
.+.+.||+.+||+.+.+.+.+.|.|++.+.+++.+++.++.. .+|.+++...++ ......| -+..+....
T Consensus 66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~ 144 (205)
T PRK13582 66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG 144 (205)
T ss_pred hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence 456799999999999877999999999999999999998865 467654432211 1111111 111223344
Q ss_pred CcEEEEeCCch
Q 040058 185 RGIVILDDTES 195 (326)
Q Consensus 185 ~~vvIvDD~~~ 195 (326)
..++.|.|+..
T Consensus 145 ~~~v~iGDs~~ 155 (205)
T PRK13582 145 YRVIAAGDSYN 155 (205)
T ss_pred CeEEEEeCCHH
Confidence 67999999974
No 98
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=94.68 E-value=0.058 Score=48.17 Aligned_cols=54 Identities=22% Similarity=0.287 Sum_probs=43.1
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHHHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAEAAV 149 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~~v~ 149 (326)
+++||||||+++.. ++-|...+.|+++. +-..++|.|.-+...+..++
T Consensus 1 i~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~ 49 (254)
T PF08282_consen 1 IFSDLDGTLLNSDG-------------------------------KISPETIEALKELQEKGIKLVIATGRSYSSIKRLL 49 (254)
T ss_dssp EEEECCTTTCSTTS-------------------------------SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH
T ss_pred cEEEECCceecCCC-------------------------------eeCHHHHHHHHhhcccceEEEEEccCccccccccc
Confidence 68999999999542 24466778888887 45999999999999999999
Q ss_pred HHhCCC
Q 040058 150 KLLDLD 155 (326)
Q Consensus 150 ~~LDP~ 155 (326)
+.+.-.
T Consensus 50 ~~~~~~ 55 (254)
T PF08282_consen 50 KELGID 55 (254)
T ss_dssp HHTTHC
T ss_pred ccccch
Confidence 876544
No 99
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=94.67 E-value=0.051 Score=51.70 Aligned_cols=83 Identities=17% Similarity=0.217 Sum_probs=57.6
Q ss_pred EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhC---CCCccccceEEeecCCC--C---C----cccc--C
Q 040058 113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLD---LDSKYFSSRIIAREDFN--G---K----DRKN--P 177 (326)
Q Consensus 113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LD---P~~~~F~~Ri~sRd~~~--~---~----~~Kd--L 177 (326)
.-+.+|||+.+||+.+.+. ..+.|+|+|...+++.+++.++ +...++.+++...++.. + . +-|. +
T Consensus 118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v 197 (277)
T TIGR01544 118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV 197 (277)
T ss_pred cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence 3578999999999999766 9999999999999999999643 44456566655322211 1 1 1121 1
Q ss_pred -----CCCC--CCCCcEEEEeCCch
Q 040058 178 -----DLVR--GQERGIVILDDTES 195 (326)
Q Consensus 178 -----~~l~--~~~~~vvIvDD~~~ 195 (326)
+.++ .+.+.+|+|.|+..
T Consensus 198 ~~~~~~~~~~~~~~~~vI~vGDs~~ 222 (277)
T TIGR01544 198 ALRNTEYFNQLKDRSNIILLGDSQG 222 (277)
T ss_pred HHHHHHHhCccCCcceEEEECcChh
Confidence 1223 46678999999974
No 100
>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins. 5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....
Probab=94.58 E-value=0.011 Score=52.58 Aligned_cols=77 Identities=19% Similarity=0.147 Sum_probs=42.8
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHH-H---HHHHHHHhCCC-Cccc-cceEEeecCCCCCccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRC-Y---AEAAVKLLDLD-SKYF-SSRIIAREDFNGKDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~-Y---A~~v~~~LDP~-~~~F-~~Ri~sRd~~~~~~~KdL~~l~~~~~~v 187 (326)
.+.=||+.|.|++|.+. +++++-|+.... + +..-.+.|+-. +.++ .+.+++. .|+ .++.|
T Consensus 72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~--~v~~D---- 138 (191)
T PF06941_consen 72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKT--LVGGD---- 138 (191)
T ss_dssp --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGG--GC--S----
T ss_pred CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCC--eEecc----
Confidence 56779999999999988 577777776554 1 33334445433 1223 3334431 233 24444
Q ss_pred EEEeCCchhhccCCCCe
Q 040058 188 VILDDTESVWSDHTENL 204 (326)
Q Consensus 188 vIvDD~~~vw~~~~~N~ 204 (326)
++|||++.........+
T Consensus 139 vlIDD~~~n~~~~~~~g 155 (191)
T PF06941_consen 139 VLIDDRPHNLEQFANAG 155 (191)
T ss_dssp EEEESSSHHHSS-SSES
T ss_pred EEecCChHHHHhccCCC
Confidence 89999998776444444
No 101
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=94.51 E-value=0.088 Score=47.32 Aligned_cols=54 Identities=28% Similarity=0.413 Sum_probs=42.7
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV 149 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~ 149 (326)
+++||||||+++... ..-| ..+.|+.+.+. ..++|.|......+.+++
T Consensus 2 i~~DlDGTLL~~~~~------------------------------~~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~ 50 (221)
T TIGR02463 2 VFSDLDGTLLDSHSY------------------------------DWQP-AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ 50 (221)
T ss_pred EEEeCCCCCcCCCCC------------------------------CcHH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 789999999976421 0222 67888888766 899999999999999999
Q ss_pred HHhCCC
Q 040058 150 KLLDLD 155 (326)
Q Consensus 150 ~~LDP~ 155 (326)
+.+...
T Consensus 51 ~~l~~~ 56 (221)
T TIGR02463 51 KALGLT 56 (221)
T ss_pred HHcCCC
Confidence 988754
No 102
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=94.49 E-value=0.092 Score=48.58 Aligned_cols=59 Identities=24% Similarity=0.221 Sum_probs=50.4
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA 145 (326)
....+++||||||+.+.. ...|...+.|+++. +...++|.|...-..+
T Consensus 2 ~~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~ 50 (264)
T COG0561 2 MIKLLAFDLDGTLLDSNK-------------------------------TISPETKEALARLREKGVKVVLATGRPLPDV 50 (264)
T ss_pred CeeEEEEcCCCCccCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEECCCChHHH
Confidence 357899999999999862 26778888899884 5599999999999999
Q ss_pred HHHHHHhCCCC
Q 040058 146 EAAVKLLDLDS 156 (326)
Q Consensus 146 ~~v~~~LDP~~ 156 (326)
.++++.|..++
T Consensus 51 ~~~~~~l~~~~ 61 (264)
T COG0561 51 LSILEELGLDG 61 (264)
T ss_pred HHHHHHcCCCc
Confidence 99999999886
No 103
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=94.46 E-value=0.082 Score=48.43 Aligned_cols=54 Identities=26% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
.+++||||||++... .-|...++|+++.+. ..+++.|.-++.-+..+
T Consensus 1 li~~DlDGTLl~~~~--------------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~ 48 (225)
T TIGR02461 1 VIFTDLDGTLLPPGY--------------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYY 48 (225)
T ss_pred CEEEeCCCCCcCCCC--------------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence 368999999999421 224578889988876 89999998888888888
Q ss_pred HHHhCCC
Q 040058 149 VKLLDLD 155 (326)
Q Consensus 149 ~~~LDP~ 155 (326)
++.+...
T Consensus 49 ~~~lg~~ 55 (225)
T TIGR02461 49 REELGVE 55 (225)
T ss_pred HHHcCCC
Confidence 8887754
No 104
>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5. The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.
Probab=94.39 E-value=0.077 Score=51.21 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=39.8
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-----CceEEEEcCCc--
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-----LVDIYLCTMST-- 141 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-----~yEl~IyT~g~-- 141 (326)
+.+++|+||||+++. ..-||+.++|+.+.. ...+.+.|+++
T Consensus 1 ~~~ifD~DGvL~~g~--------------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~ 48 (321)
T TIGR01456 1 FGFAFDIDGVLFRGK--------------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGF 48 (321)
T ss_pred CEEEEeCcCceECCc--------------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCC
Confidence 468999999999985 246788888888876 57788888775
Q ss_pred --HHHHHHHHHHhC
Q 040058 142 --RCYAEAAVKLLD 153 (326)
Q Consensus 142 --~~YA~~v~~~LD 153 (326)
+.+|+.+.+.++
T Consensus 49 s~~~~~~~l~~~lG 62 (321)
T TIGR01456 49 SERARAEEISSLLG 62 (321)
T ss_pred CHHHHHHHHHHHcC
Confidence 566776655543
No 105
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=94.15 E-value=0.1 Score=46.09 Aligned_cols=100 Identities=18% Similarity=0.165 Sum_probs=64.1
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCce---EEEEcCC--
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVD---IYLCTMS-- 140 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yE---l~IyT~g-- 140 (326)
.+=..||+|+|+||..-... .+-|-+.+.++++.+.|- +.|.+|+
T Consensus 39 ~Gik~li~DkDNTL~~~~~~------------------------------~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 39 KGIKALIFDKDNTLTPPYED------------------------------EIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred cCceEEEEcCCCCCCCCCcC------------------------------cCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 55578999999999754321 366778888999987753 9999998
Q ss_pred -----cHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCC-----CCCCcEEEEeCCc--hhhccCC
Q 040058 141 -----TRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-----GQERGIVILDDTE--SVWSDHT 201 (326)
Q Consensus 141 -----~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~-----~~~~~vvIvDD~~--~vw~~~~ 201 (326)
...-|+.+.+.|.-. +|.++-- -+....+-++.+. ..++.+++|.|+. |+...+.
T Consensus 89 s~~d~~~~~a~~~~~~lgIp--vl~h~~k----KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~ 155 (168)
T PF09419_consen 89 SSDDPDGERAEALEKALGIP--VLRHRAK----KPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR 155 (168)
T ss_pred cccCccHHHHHHHHHhhCCc--EEEeCCC----CCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc
Confidence 467788888888743 2322110 0111111122222 3588999999996 6665443
No 106
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=94.08 E-value=0.13 Score=47.97 Aligned_cols=59 Identities=22% Similarity=0.262 Sum_probs=43.1
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
+.+..+++||||||+++... .-|-..+-|+++.+. ..++|.|.-....
T Consensus 5 ~~~~lI~~DlDGTLL~~~~~-------------------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~ 53 (271)
T PRK03669 5 QDPLLIFTDLDGTLLDSHTY-------------------------------DWQPAAPWLTRLREAQVPVILCSSKTAAE 53 (271)
T ss_pred CCCeEEEEeCccCCcCCCCc-------------------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHH
Confidence 45678999999999986321 223345567777655 8889999888888
Q ss_pred HHHHHHHhCCC
Q 040058 145 AEAAVKLLDLD 155 (326)
Q Consensus 145 A~~v~~~LDP~ 155 (326)
+..+++.|+.+
T Consensus 54 i~~~~~~l~~~ 64 (271)
T PRK03669 54 MLPLQQTLGLQ 64 (271)
T ss_pred HHHHHHHhCCC
Confidence 88888888764
No 107
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=93.97 E-value=0.13 Score=46.12 Aligned_cols=57 Identities=18% Similarity=0.174 Sum_probs=45.5
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+.... .+-|...+-|+++.+. +.++|.|.-+...+.+
T Consensus 2 k~v~~DlDGTLl~~~~-------------------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~ 50 (215)
T TIGR01487 2 KLVAIDIDGTLTEPNR-------------------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARA 50 (215)
T ss_pred cEEEEecCCCcCCCCc-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHH
Confidence 3688999999996421 2556777778888766 8999999999998999
Q ss_pred HHHHhCCCC
Q 040058 148 AVKLLDLDS 156 (326)
Q Consensus 148 v~~~LDP~~ 156 (326)
+++.|+.++
T Consensus 51 ~~~~l~~~~ 59 (215)
T TIGR01487 51 LAVLIGTSG 59 (215)
T ss_pred HHHHhCCCC
Confidence 999998764
No 108
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=93.84 E-value=0.14 Score=47.19 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=43.8
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV 149 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~ 149 (326)
+++||||||++... .+-|...+.|+++.+. ..++|.|..+...+..++
T Consensus 2 i~~DlDGTLl~~~~-------------------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~ 50 (256)
T TIGR00099 2 IFIDLDGTLLNDDH-------------------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNIL 50 (256)
T ss_pred EEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence 78999999998631 2456677788888766 999999999999998998
Q ss_pred HHhCCC
Q 040058 150 KLLDLD 155 (326)
Q Consensus 150 ~~LDP~ 155 (326)
+.++.+
T Consensus 51 ~~~~~~ 56 (256)
T TIGR00099 51 KELGLD 56 (256)
T ss_pred HHcCCC
Confidence 888765
No 109
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=93.73 E-value=0.16 Score=44.00 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=41.3
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH--
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE-- 146 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~-- 146 (326)
.+++|+||||+.+.....+- ..-+.- ...|++.++++.+.+. |.+++.|.-...-+.
T Consensus 1 iVisDIDGTL~~sd~~~~~~------------------~~~~~~--~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t 60 (157)
T smart00775 1 IVISDIDGTITKSDVLGHVV------------------PIIGKD--WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRT 60 (157)
T ss_pred CEEEecCCCCcccccccccc------------------cccccC--cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHH
Confidence 37899999999886322110 000011 3579999999999876 888888887766664
Q ss_pred -HHHHH
Q 040058 147 -AAVKL 151 (326)
Q Consensus 147 -~v~~~ 151 (326)
+.++.
T Consensus 61 ~~~l~~ 66 (157)
T smart00775 61 RSYLSQ 66 (157)
T ss_pred HHHHHH
Confidence 44444
No 110
>PTZ00445 p36-lilke protein; Provisional
Probab=93.72 E-value=0.034 Score=50.86 Aligned_cols=128 Identities=11% Similarity=0.082 Sum_probs=73.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.+=..+++|||.|||-.-.. +.++ ...+. ..+....+|.+.++++.+.+. +.+.|-|.+.+.-
T Consensus 41 ~GIk~Va~D~DnTlI~~Hsg---G~~~----~~~~~---------~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~ 104 (219)
T PTZ00445 41 CGIKVIASDFDLTMITKHSG---GYID----PDNDD---------IRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL 104 (219)
T ss_pred cCCeEEEecchhhhhhhhcc---cccC----CCcch---------hhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence 66688999999999873321 1110 00000 023346999999999999865 9999999999865
Q ss_pred -----------HHHHHH-HhCCCCcccc-ceEE---e---ecCC-------CC--C----c--cccCCCCCCCCCcEEEE
Q 040058 145 -----------AEAAVK-LLDLDSKYFS-SRII---A---REDF-------NG--K----D--RKNPDLVRGQERGIVIL 190 (326)
Q Consensus 145 -----------A~~v~~-~LDP~~~~F~-~Ri~---s---Rd~~-------~~--~----~--~KdL~~l~~~~~~vvIv 190 (326)
..++++ .|+-.+.=|. .+++ . .+.. .. . | .+=+++.+.+++.+++|
T Consensus 105 ~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFI 184 (219)
T PTZ00445 105 IPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFI 184 (219)
T ss_pred ccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEee
Confidence 222332 2332221111 1111 0 1110 00 0 1 22234557789999999
Q ss_pred eCCchhhccCCCCeEEeCc
Q 040058 191 DDTESVWSDHTENLIVLGK 209 (326)
Q Consensus 191 DD~~~vw~~~~~N~I~I~~ 209 (326)
||++........-|+..--
T Consensus 185 DD~~~NVeaA~~lGi~ai~ 203 (219)
T PTZ00445 185 DDDMNNCKNALKEGYIALH 203 (219)
T ss_pred cCCHHHHHHHHHCCCEEEE
Confidence 9999877654445554433
No 111
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=93.67 E-value=0.13 Score=44.09 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=42.7
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA 165 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s 165 (326)
+.++||+.++|+.+.+. +.++|.|++.+.|++++++.++-. .+|++++..
T Consensus 72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~~ 122 (177)
T TIGR01488 72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLEF 122 (177)
T ss_pred CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEEE
Confidence 56899999999999765 999999999999999999998766 567765543
No 112
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=93.58 E-value=0.18 Score=46.71 Aligned_cols=57 Identities=21% Similarity=0.263 Sum_probs=43.8
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE 146 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~ 146 (326)
...+++||||||+++.. .+-|...+-|+++.+. ..++|.|.-....+.
T Consensus 3 ~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~ 51 (270)
T PRK10513 3 IKLIAIDMDGTLLLPDH-------------------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVH 51 (270)
T ss_pred eEEEEEecCCcCcCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHH
Confidence 35788999999998641 1344556778888766 899999988888888
Q ss_pred HHHHHhCCC
Q 040058 147 AAVKLLDLD 155 (326)
Q Consensus 147 ~v~~~LDP~ 155 (326)
++++.++.+
T Consensus 52 ~~~~~l~~~ 60 (270)
T PRK10513 52 RYLKELHME 60 (270)
T ss_pred HHHHHhCCC
Confidence 888888764
No 113
>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]
Probab=93.52 E-value=0.12 Score=46.27 Aligned_cols=126 Identities=10% Similarity=-0.014 Sum_probs=78.1
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC----cH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS----TR 142 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g----~~ 142 (326)
...|+||.||||+--... .+.. .+ -..+.||+.+=|..+.+. |.++|+|+. +.
T Consensus 5 ~k~lflDRDGtin~d~~~-yv~~--------~~-------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rg 62 (181)
T COG0241 5 QKALFLDRDGTINIDKGD-YVDS--------LD-------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRG 62 (181)
T ss_pred CcEEEEcCCCceecCCCc-ccCc--------HH-------------HhccCccHHHHHHHHHhCCCeEEEEECCCCcccc
Confidence 578999999999865431 1111 11 126899999999999766 999999992 22
Q ss_pred --------HHHHHHHHHhCCCCccccceEEeecC----CCC------CccccCCCCCCCCCcEEEEeCCchhhccCCCCe
Q 040058 143 --------CYAEAAVKLLDLDSKYFSSRIIARED----FNG------KDRKNPDLVRGQERGIVILDDTESVWSDHTENL 204 (326)
Q Consensus 143 --------~YA~~v~~~LDP~~~~F~~Ri~sRd~----~~~------~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~ 204 (326)
.+-+.|.+.|--.|.-|.+.++.... |.. ++..-++..+.|++..++|-|+..=-......+
T Consensus 63 yf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~g 142 (181)
T COG0241 63 YFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAG 142 (181)
T ss_pred CccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCC
Confidence 23333666666666667765554332 221 122234445688999999999963332222334
Q ss_pred EEeCccccccccc
Q 040058 205 IVLGKYVYFRDKE 217 (326)
Q Consensus 205 I~I~~y~~f~~~~ 217 (326)
+. ++.|..+.+
T Consensus 143 i~--~~~~~~~~~ 153 (181)
T COG0241 143 IK--GVLVLTGIG 153 (181)
T ss_pred CC--ceEEEcCcc
Confidence 44 777666654
No 114
>PRK10444 UMP phosphatase; Provisional
Probab=93.41 E-value=0.13 Score=47.91 Aligned_cols=51 Identities=16% Similarity=0.187 Sum_probs=35.8
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
.+++||||||+++. ..-||..++|+.+.+. ..+++.|+.+..-+..+
T Consensus 3 ~v~~DlDGtL~~~~--------------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~ 50 (248)
T PRK10444 3 NVICDIDGVLMHDN--------------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDL 50 (248)
T ss_pred EEEEeCCCceEeCC--------------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHH
Confidence 57899999999885 1346777777777654 77777777766555555
Q ss_pred HHHh
Q 040058 149 VKLL 152 (326)
Q Consensus 149 ~~~L 152 (326)
++.|
T Consensus 51 ~~~l 54 (248)
T PRK10444 51 ANRF 54 (248)
T ss_pred HHHH
Confidence 5544
No 115
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=93.18 E-value=0.27 Score=45.39 Aligned_cols=57 Identities=23% Similarity=0.241 Sum_probs=41.6
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+++.. .+-|...+-|+++.+. ..++|.|.-....+..
T Consensus 4 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~ 52 (272)
T PRK10530 4 RVIALDLDGTLLTPKK-------------------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHP 52 (272)
T ss_pred cEEEEeCCCceECCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence 5788999999997642 1344455667777655 7888888877777888
Q ss_pred HHHHhCCCC
Q 040058 148 AVKLLDLDS 156 (326)
Q Consensus 148 v~~~LDP~~ 156 (326)
+++.|+.++
T Consensus 53 ~~~~l~~~~ 61 (272)
T PRK10530 53 FYQALALDT 61 (272)
T ss_pred HHHhcCCCC
Confidence 888887653
No 116
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=93.14 E-value=0.24 Score=44.54 Aligned_cols=57 Identities=23% Similarity=0.366 Sum_probs=43.5
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+.+.. .+.|...+-|+++.+. ..++|.|.-+...+.+
T Consensus 4 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~ 52 (230)
T PRK01158 4 KAIAIDIDGTITDKDR-------------------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARA 52 (230)
T ss_pred eEEEEecCCCcCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence 5788999999996531 2455666777777755 7888888888888888
Q ss_pred HHHHhCCCC
Q 040058 148 AVKLLDLDS 156 (326)
Q Consensus 148 v~~~LDP~~ 156 (326)
+++.+..++
T Consensus 53 ~~~~l~~~~ 61 (230)
T PRK01158 53 AAKLIGTSG 61 (230)
T ss_pred HHHHhCCCC
Confidence 888887653
No 117
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=92.95 E-value=0.21 Score=44.24 Aligned_cols=54 Identities=28% Similarity=0.277 Sum_probs=43.6
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
.+++|+||||+.+.. . ...|.+.+.|+++.+. ..++|-|..+..++..+
T Consensus 1 li~~D~DgTL~~~~~-~-----------------------------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~ 50 (204)
T TIGR01484 1 LLFFDLDGTLLDPNA-H-----------------------------ELSPETIEALERLREAGVKVVLVTGRSLAEIKEL 50 (204)
T ss_pred CEEEeCcCCCcCCCC-C-----------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
Confidence 378999999997421 0 3567888999999877 89999999999999999
Q ss_pred HHHhC
Q 040058 149 VKLLD 153 (326)
Q Consensus 149 ~~~LD 153 (326)
++.++
T Consensus 51 ~~~~~ 55 (204)
T TIGR01484 51 LKQLP 55 (204)
T ss_pred HHhCC
Confidence 88743
No 118
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=92.95 E-value=0.21 Score=46.10 Aligned_cols=54 Identities=28% Similarity=0.296 Sum_probs=42.4
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV 149 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~ 149 (326)
+++||||||+++... .-|...+.++.+.+. ..+++.|.-+...+..++
T Consensus 2 i~~DlDGTll~~~~~-------------------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~ 50 (256)
T TIGR01486 2 IFTDLDGTLLDPHGY-------------------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLR 50 (256)
T ss_pred EEEcCCCCCcCCCCc-------------------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence 789999999987521 123467888888876 899999988888889999
Q ss_pred HHhCCC
Q 040058 150 KLLDLD 155 (326)
Q Consensus 150 ~~LDP~ 155 (326)
+.++..
T Consensus 51 ~~~~~~ 56 (256)
T TIGR01486 51 KELGLE 56 (256)
T ss_pred HHcCCC
Confidence 888743
No 119
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=92.87 E-value=0.19 Score=45.41 Aligned_cols=52 Identities=6% Similarity=0.111 Sum_probs=45.3
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE 167 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd 167 (326)
+.++||+.+||+.+.+.+.++|-|+|...+++++++.++-+ .+|.+++...+
T Consensus 67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~~~ 118 (203)
T TIGR02137 67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDD 118 (203)
T ss_pred CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEEec
Confidence 47899999999999888899999999999999999999877 57877666433
No 120
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=92.64 E-value=0.15 Score=47.54 Aligned_cols=46 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
.+++||||||++...... ..=||..++|+.+.+. ..+.+.|+.+..
T Consensus 3 ~i~~D~DGtl~~~~~~~~----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~ 49 (257)
T TIGR01458 3 GVLLDISGVLYISDAKSG----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE 49 (257)
T ss_pred EEEEeCCCeEEeCCCccc----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence 689999999998752100 1568999999999866 889999975544
No 121
>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.47 E-value=0.25 Score=50.23 Aligned_cols=123 Identities=20% Similarity=0.209 Sum_probs=71.6
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
..|.+||||||+||+-...-.. . ++.+ .+-. ..+ ..---+++|...+.+. +=+.|.+-.+..
T Consensus 220 ~~kK~LVLDLDNTLWGGVIGed------G----v~GI--~Ls~~~~G----~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~ 283 (574)
T COG3882 220 KSKKALVLDLDNTLWGGVIGED------G----VDGI--RLSNSAEG----EAFKTFQNFIKGLKKQGVLLAVCSKNTEK 283 (574)
T ss_pred cccceEEEecCCcccccccccc------c----ccce--eecCCCCc----hhHHHHHHHHHHHHhccEEEEEecCCchh
Confidence 8899999999999998764321 1 1100 0000 000 0001256777777765 789999999998
Q ss_pred HHHHHHHHhCCCCccccceEEeecCCCC----------CccccCCCCCCCCCcEEEEeCCchhhccCCCCe-EEeCccc
Q 040058 144 YAEAAVKLLDLDSKYFSSRIIAREDFNG----------KDRKNPDLVRGQERGIVILDDTESVWSDHTENL-IVLGKYV 211 (326)
Q Consensus 144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~-I~I~~y~ 211 (326)
=|..+... -|+ -|+..++... ...|-.++|+-+.+..|++||.|.--..-+.++ +.|.+|.
T Consensus 284 da~evF~k-hp~------MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~ 355 (574)
T COG3882 284 DAKEVFRK-HPD------MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP 355 (574)
T ss_pred hHHHHHhh-CCC------eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence 88887753 222 3553333211 233444567888899999999996443222222 5555443
No 122
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=92.37 E-value=0.33 Score=45.13 Aligned_cols=57 Identities=18% Similarity=0.139 Sum_probs=42.3
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+.+.. .+-|...+-|+++.+. ..++|.|.-....+.+
T Consensus 3 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~ 51 (272)
T PRK15126 3 RLAAFDMDGTLLMPDH-------------------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQH 51 (272)
T ss_pred cEEEEeCCCcCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
Confidence 4789999999997532 2444556667777655 7888888888888888
Q ss_pred HHHHhCCCC
Q 040058 148 AVKLLDLDS 156 (326)
Q Consensus 148 v~~~LDP~~ 156 (326)
+++.++.++
T Consensus 52 ~~~~l~~~~ 60 (272)
T PRK15126 52 ILGALSLDA 60 (272)
T ss_pred HHHHcCCCC
Confidence 888887654
No 123
>PLN02645 phosphoglycolate phosphatase
Probab=92.35 E-value=0.2 Score=48.12 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=39.1
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.+-..+++|+||||++... .=||+.++|+.+.+. ..+++-|+.+..-
T Consensus 26 ~~~~~~~~D~DGtl~~~~~--------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~ 73 (311)
T PLN02645 26 DSVETFIFDCDGVIWKGDK--------------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTKS 73 (311)
T ss_pred HhCCEEEEeCcCCeEeCCc--------------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence 4455889999999998641 228999999999754 9999999988444
Q ss_pred HHHHHH
Q 040058 145 AEAAVK 150 (326)
Q Consensus 145 A~~v~~ 150 (326)
...+++
T Consensus 74 ~~~~~~ 79 (311)
T PLN02645 74 RAQYGK 79 (311)
T ss_pred HHHHHH
Confidence 444443
No 124
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=92.32 E-value=0.25 Score=44.77 Aligned_cols=81 Identities=17% Similarity=0.162 Sum_probs=61.5
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI 187 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v 187 (326)
..+-||+.+.|+.+++. |.+.|.|+..+..++.+++.++-. .+|.. +++-++... ....-+..++.+++.+
T Consensus 88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~-~~F~~-i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~ 165 (220)
T COG0546 88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA-DYFDV-IVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA 165 (220)
T ss_pred CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc-cccce-EEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence 57899999999999877 899999999999999999999988 68874 555232222 1223344556666689
Q ss_pred EEEeCCchhh
Q 040058 188 VILDDTESVW 197 (326)
Q Consensus 188 vIvDD~~~vw 197 (326)
++|-|+..=-
T Consensus 166 l~VGDs~~Di 175 (220)
T COG0546 166 LMVGDSLNDI 175 (220)
T ss_pred EEECCCHHHH
Confidence 9999997544
No 125
>PRK10976 putative hydrolase; Provisional
Probab=92.27 E-value=0.34 Score=44.80 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=39.4
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+++.. .+-|...+-|+++.+. ..++|.|.-....+..
T Consensus 3 kli~~DlDGTLl~~~~-------------------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~ 51 (266)
T PRK10976 3 QVVASDLDGTLLSPDH-------------------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQ 51 (266)
T ss_pred eEEEEeCCCCCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence 4789999999997642 1334445556666554 7788888777777777
Q ss_pred HHHHhCCCC
Q 040058 148 AVKLLDLDS 156 (326)
Q Consensus 148 v~~~LDP~~ 156 (326)
+++.++.++
T Consensus 52 ~~~~l~~~~ 60 (266)
T PRK10976 52 IRDNLEIKS 60 (266)
T ss_pred HHHhcCCCC
Confidence 777776553
No 126
>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family. This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.
Probab=92.20 E-value=0.21 Score=47.02 Aligned_cols=41 Identities=12% Similarity=0.188 Sum_probs=31.6
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST 141 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~ 141 (326)
..+++|+||||++.. ..-||+.++|+++.+. ..+++.|+++
T Consensus 3 ~~~~~D~DGtl~~~~--------------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns 44 (279)
T TIGR01452 3 QGFIFDCDGVLWLGE--------------------------------RVVPGAPELLDRLARAGKAALFVTNNS 44 (279)
T ss_pred cEEEEeCCCceEcCC--------------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 368899999998853 2457888889888765 7888888754
No 127
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=91.94 E-value=0.31 Score=43.56 Aligned_cols=52 Identities=21% Similarity=0.278 Sum_probs=35.4
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV 149 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~ 149 (326)
+++||||||+++.. .+.|-..+-|+++.+. ..+++.|.-....+.+++
T Consensus 1 i~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 1 IASDIDGTLTDPNR-------------------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred CeEeccCccCCCCc-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 57999999998642 1334445556666554 677777777777677777
Q ss_pred HHhC
Q 040058 150 KLLD 153 (326)
Q Consensus 150 ~~LD 153 (326)
+.++
T Consensus 50 ~~l~ 53 (225)
T TIGR01482 50 KLIG 53 (225)
T ss_pred HHhC
Confidence 7776
No 128
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=91.80 E-value=0.15 Score=46.73 Aligned_cols=85 Identities=12% Similarity=0.062 Sum_probs=59.2
Q ss_pred EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV 188 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv 188 (326)
+..-||+.++|+.+.+.|.+.|.|+|+.. ++..+-. .+|. .+++.++... .+.+-+++++.+++.++
T Consensus 112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~ 184 (238)
T PRK10748 112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFE-FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL 184 (238)
T ss_pred CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhc-eeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence 56779999999999988999999999875 2444443 5786 4665555432 13444566778889999
Q ss_pred EEeCCc--hhhccCCCCeEEe
Q 040058 189 ILDDTE--SVWSDHTENLIVL 207 (326)
Q Consensus 189 IvDD~~--~vw~~~~~N~I~I 207 (326)
+|.|++ ++-.. ..+|+..
T Consensus 185 ~VGD~~~~Di~~A-~~aG~~~ 204 (238)
T PRK10748 185 HVGDDLTTDVAGA-IRCGMQA 204 (238)
T ss_pred EEcCCcHHHHHHH-HHCCCeE
Confidence 998884 55543 3455543
No 129
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=91.75 E-value=0.3 Score=45.89 Aligned_cols=61 Identities=15% Similarity=0.047 Sum_probs=44.4
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc--CceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS--LVDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~--~yEl~IyT~g~~~ 143 (326)
..++.+++|+||||++....|.- ..+-|.+.+-|+.+++ ...++|.|--...
T Consensus 12 ~~~~li~~D~DGTLl~~~~~p~~--------------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~ 65 (266)
T PRK10187 12 SANYAWFFDLDGTLAEIKPHPDQ--------------------------VVVPDNILQGLQLLATANDGALALISGRSMV 65 (266)
T ss_pred CCCEEEEEecCCCCCCCCCCccc--------------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHH
Confidence 45789999999999987654420 1355888888999986 3678888877777
Q ss_pred HHHHHHHHh
Q 040058 144 YAEAAVKLL 152 (326)
Q Consensus 144 YA~~v~~~L 152 (326)
-+..+++.+
T Consensus 66 ~~~~~~~~~ 74 (266)
T PRK10187 66 ELDALAKPY 74 (266)
T ss_pred HHHHhcCcc
Confidence 666666544
No 130
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=91.55 E-value=0.34 Score=44.87 Aligned_cols=125 Identities=14% Similarity=0.023 Sum_probs=67.9
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
.+|..+|||+|+|++....... ...+.. ..+...-|.. -..---..-|++.+|++.+.+. ++|++-|.=+..
T Consensus 75 dg~~A~V~DIDET~LsN~py~~----~~~~g~--~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~ 148 (229)
T TIGR01675 75 DGMDAWIFDVDDTLLSNIPYYK----KHGYGT--EKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEE 148 (229)
T ss_pred CCCcEEEEccccccccCHHHHH----HhccCC--CcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence 6999999999999998763210 000000 0000000000 0000115779999999999765 999999998887
Q ss_pred HHHHHHHHhCCCCcc-ccceEEeecC--CCCC--ccccCCC---CCCCCCcEEEEeCCchhh
Q 040058 144 YAEAAVKLLDLDSKY-FSSRIIARED--FNGK--DRKNPDL---VRGQERGIVILDDTESVW 197 (326)
Q Consensus 144 YA~~v~~~LDP~~~~-F~~Ri~sRd~--~~~~--~~KdL~~---l~~~~~~vvIvDD~~~vw 197 (326)
......+.|--.|-- + .+++=|.. .... ..|+-.+ ...+-+-+..|+|...-+
T Consensus 149 ~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl 209 (229)
T TIGR01675 149 LRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDL 209 (229)
T ss_pred HHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHh
Confidence 766665555444311 2 35655652 2110 0132211 123455677888886544
No 131
>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []. It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity
Probab=91.38 E-value=0.54 Score=43.73 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=43.1
Q ss_pred EEEeCccHHHHHHHhhc---CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058 114 LVKLRPFVRTFLEQASS---LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA 165 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~---~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s 165 (326)
-+.+-||..+|++.+++ .++++|-|.|..-|-+.|++.-+-. .+|+ .|+|
T Consensus 69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~-~~f~-~I~T 121 (234)
T PF06888_consen 69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR-DCFS-EIFT 121 (234)
T ss_pred cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc-cccc-eEEe
Confidence 46889999999999943 5999999999999999999998876 5676 4775
No 132
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=91.34 E-value=0.37 Score=44.39 Aligned_cols=59 Identities=20% Similarity=0.123 Sum_probs=37.0
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCc-eEEEEcCCcHHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLV-DIYLCTMSTRCYAE 146 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~y-El~IyT~g~~~YA~ 146 (326)
++.++.||||||+++..... ...|.+.+-++++.+.- .+++-|.-+..=+.
T Consensus 1 ~~li~tDlDGTLl~~~~~~~----------------------------~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~ 52 (249)
T TIGR01485 1 RLLLVSDLDNTLVDHTDGDN----------------------------QALLRLNALLEDHRGEDSLLVYSTGRSPHSYK 52 (249)
T ss_pred CeEEEEcCCCcCcCCCCCCh----------------------------HHHHHHHHHHHHhhccCceEEEEcCCCHHHHH
Confidence 46889999999998642110 35577788888877665 44455444444455
Q ss_pred HHHHHhCC
Q 040058 147 AAVKLLDL 154 (326)
Q Consensus 147 ~v~~~LDP 154 (326)
++++.+.+
T Consensus 53 ~~~~~~~~ 60 (249)
T TIGR01485 53 ELQKQKPL 60 (249)
T ss_pred HHHhcCCC
Confidence 56554443
No 133
>COG2503 Predicted secreted acid phosphatase [General function prediction only]
Probab=91.32 E-value=0.21 Score=46.68 Aligned_cols=72 Identities=22% Similarity=0.243 Sum_probs=40.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~ 143 (326)
.++..+|||||||+++.+... .+.......+.+.-|. .-..---+.=||+.|||+.+.+. -.|+--|+-+++
T Consensus 77 ~K~~aVvlDlDETvLdNs~Yq------gy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~ 150 (274)
T COG2503 77 GKKKAVVLDLDETVLDNSAYQ------GYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQE 150 (274)
T ss_pred CCCceEEEecchHhhcCcccc------chhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence 667799999999999987432 1111111111111110 00011236779999999999766 444444444443
No 134
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=91.25 E-value=0.35 Score=44.88 Aligned_cols=40 Identities=18% Similarity=0.309 Sum_probs=29.1
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST 141 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~ 141 (326)
.+++|+||||++... .=|+..++|+++.+. ..+++.|+++
T Consensus 3 ~~~~D~DGtl~~~~~--------------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~ 43 (249)
T TIGR01457 3 GYLIDLDGTMYKGKE--------------------------------RIPEAETFVHELQKRDIPYLFVTNNS 43 (249)
T ss_pred EEEEeCCCceEcCCe--------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence 688999999998641 235777888877655 7777777633
No 135
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=90.79 E-value=0.34 Score=45.93 Aligned_cols=57 Identities=16% Similarity=0.131 Sum_probs=42.5
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH--
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC-- 143 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~-- 143 (326)
+.-...+||||||++.. ..=||+.+||+.+.+. -.+++-||++..
T Consensus 7 ~y~~~l~DlDGvl~~G~--------------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~ 54 (269)
T COG0647 7 KYDGFLFDLDGVLYRGN--------------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSR 54 (269)
T ss_pred hcCEEEEcCcCceEeCC--------------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence 34568899999999775 2569999999999877 888888998765
Q ss_pred --HHHHHHHHhCCC
Q 040058 144 --YAEAAVKLLDLD 155 (326)
Q Consensus 144 --YA~~v~~~LDP~ 155 (326)
|+.++..+..++
T Consensus 55 ~~~~~~L~~~~~~~ 68 (269)
T COG0647 55 EVVAARLSSLGGVD 68 (269)
T ss_pred HHHHHHHHhhcCCC
Confidence 444555534443
No 136
>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria. The function is not known.
Probab=90.51 E-value=0.71 Score=43.28 Aligned_cols=146 Identities=17% Similarity=0.181 Sum_probs=84.7
Q ss_pred CceEEEEeCCCceeeecccCCCCccchh-hhc---cccccc---cceee--c----cceEEEEeCccHHHHHHHhhcC-c
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKY-LKK---QIHSFI---GSLFQ--M----ANDKLVKLRPFVRTFLEQASSL-V 132 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~-l~~---~~~~~~---~~l~~--~----~~~~~vklRPgl~eFL~~ls~~-y 132 (326)
....+|+|+|.||+-+...-.-+.|... +.. ...+.. ..++. . ...-....-|.+.++++.++.. .
T Consensus 19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~ 98 (252)
T PF11019_consen 19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI 98 (252)
T ss_pred CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence 6788999999999987722111222211 100 000000 11110 0 0134456789999999999866 9
Q ss_pred eEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCC-----------C------------CCccc------cCCCCCCC
Q 040058 133 DIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDF-----------N------------GKDRK------NPDLVRGQ 183 (326)
Q Consensus 133 El~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~-----------~------------~~~~K------dL~~l~~~ 183 (326)
.+..+|+....+...-++.|--.|-=|++..+ +++. . +..-| =|+.++..
T Consensus 99 ~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~ 177 (252)
T PF11019_consen 99 PVIALTARGPNMEDWTLRELKSLGIDFSSSSF-PEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS 177 (252)
T ss_pred cEEEEcCCChhhHHHHHHHHHHCCCCcccccc-ccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence 99999999999999888776434333443321 1110 0 00111 23445778
Q ss_pred CCcEEEEeCCchhhc----cCCCCeEEeCccccc
Q 040058 184 ERGIVILDDTESVWS----DHTENLIVLGKYVYF 213 (326)
Q Consensus 184 ~~~vvIvDD~~~vw~----~~~~N~I~I~~y~~f 213 (326)
++.||+|||+.+.-. .-...+|..--|+|-
T Consensus 178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt 211 (252)
T PF11019_consen 178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT 211 (252)
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence 999999999986442 123356666666653
No 137
>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25). The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....
Probab=89.71 E-value=0.32 Score=44.83 Aligned_cols=80 Identities=21% Similarity=0.212 Sum_probs=46.3
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhcccccccc-ce--eeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG-SL--FQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST 141 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~-~l--~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~ 141 (326)
.+++.+|||+|+|++...... .........+.. ++ |.....- ..=||..+|++.+.+. ++|++-|.=.
T Consensus 70 ~~~~avv~DIDeTvLsn~~y~------~~~~~~~~~~~~~~w~~wv~~~~~--~aip~a~~l~~~~~~~G~~V~~iT~R~ 141 (229)
T PF03767_consen 70 DKPPAVVFDIDETVLSNSPYY------AYLIFGGESFSPEDWDEWVASGKA--PAIPGALELYNYARSRGVKVFFITGRP 141 (229)
T ss_dssp TSEEEEEEESBTTTEEHHHHH------HHHHHHTHHH-CCHHHHHHHCTGG--EEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred CCCcEEEEECCcccccCHHHH------HHHhhccCCCChHHHHHHHhcccC--cccHHHHHHHHHHHHCCCeEEEEecCC
Confidence 689999999999999554220 000000000000 00 0001111 5669999999999877 9999999866
Q ss_pred HHHHHHHHHHhC
Q 040058 142 RCYAEAAVKLLD 153 (326)
Q Consensus 142 ~~YA~~v~~~LD 153 (326)
...-+.-++.|.
T Consensus 142 ~~~r~~T~~nL~ 153 (229)
T PF03767_consen 142 ESQREATEKNLK 153 (229)
T ss_dssp TTCHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 664444444443
No 138
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=89.60 E-value=0.26 Score=45.44 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=36.6
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~Y 144 (326)
.+|..|+||+||||+-....|. ..+.=|++.+.|+.|++.....|+=.+.|.+
T Consensus 1 ~~~~~l~lD~DGTL~~~~~~p~--------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~ 53 (244)
T TIGR00685 1 ARKRAFFFDYDGTLSEIVPDPD--------------------------AAVVSDRLLTILQKLAARPHNAIWIISGRKF 53 (244)
T ss_pred CCcEEEEEecCccccCCcCCCc--------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence 4788999999999997554332 1246689999999999886554333333344
No 139
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=89.51 E-value=0.93 Score=43.64 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=39.7
Q ss_pred eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058 69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA 147 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~ 147 (326)
..+++||||||+++... .-+-..+-|+++.+. ..+++.|.-+..=+..
T Consensus 2 KLIftDLDGTLLd~~~~-------------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~ 50 (302)
T PRK12702 2 RLVLSSLDGSLLDLEFN-------------------------------SYGAARQALAALERRSIPLVLYSLRTRAQLEH 50 (302)
T ss_pred cEEEEeCCCCCcCCCCc-------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence 47889999999986521 112245567777655 7888888887777777
Q ss_pred HHHHhCCC
Q 040058 148 AVKLLDLD 155 (326)
Q Consensus 148 v~~~LDP~ 155 (326)
+.+.|..+
T Consensus 51 l~~~Lgl~ 58 (302)
T PRK12702 51 LCRQLRLE 58 (302)
T ss_pred HHHHhCCC
Confidence 77777655
No 140
>PTZ00174 phosphomannomutase; Provisional
Probab=89.30 E-value=0.79 Score=42.32 Aligned_cols=16 Identities=38% Similarity=0.470 Sum_probs=13.7
Q ss_pred ceEEEEeCCCceeeec
Q 040058 68 KLQLVLNLDHTLLHCR 83 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~ 83 (326)
...+++||||||+++.
T Consensus 5 ~klia~DlDGTLL~~~ 20 (247)
T PTZ00174 5 KTILLFDVDGTLTKPR 20 (247)
T ss_pred CeEEEEECcCCCcCCC
Confidence 4578999999999875
No 141
>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA. Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.
Probab=88.62 E-value=0.49 Score=43.49 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=35.0
Q ss_pred EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc----HHHH
Q 040058 71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST----RCYA 145 (326)
Q Consensus 71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~----~~YA 145 (326)
++||+||||+++.. .=|++.++|+.+.+. +.+.+-|+++ ..++
T Consensus 1 ~lfD~DGvL~~~~~--------------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~ 48 (236)
T TIGR01460 1 FLFDIDGVLWLGHK--------------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYA 48 (236)
T ss_pred CEEeCcCccCcCCc--------------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence 47999999999752 235778888888655 7888887554 4566
Q ss_pred HHHHHH
Q 040058 146 EAAVKL 151 (326)
Q Consensus 146 ~~v~~~ 151 (326)
+.+.+.
T Consensus 49 ~~l~~~ 54 (236)
T TIGR01460 49 EKLSSL 54 (236)
T ss_pred HHHHHh
Confidence 666663
No 142
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=88.59 E-value=1.2 Score=47.56 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=43.9
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.++..++.||||||+++.... -|-..+-|+.+.+. ..+++.|.-+...
T Consensus 414 ~~~KLIfsDLDGTLLd~d~~i-------------------------------~~~t~eAL~~L~ekGI~~VIATGRs~~~ 462 (694)
T PRK14502 414 QFKKIVYTDLDGTLLNPLTYS-------------------------------YSTALDALRLLKDKELPLVFCSAKTMGE 462 (694)
T ss_pred ceeeEEEEECcCCCcCCCCcc-------------------------------CHHHHHHHHHHHHcCCeEEEEeCCCHHH
Confidence 778899999999999875311 01234556667655 8899999999888
Q ss_pred HHHHHHHhCCC
Q 040058 145 AEAAVKLLDLD 155 (326)
Q Consensus 145 A~~v~~~LDP~ 155 (326)
+..+++.|+..
T Consensus 463 i~~l~~~Lgl~ 473 (694)
T PRK14502 463 QDLYRNELGIK 473 (694)
T ss_pred HHHHHHHcCCC
Confidence 88888888754
No 143
>PLN02423 phosphomannomutase
Probab=88.21 E-value=0.95 Score=41.94 Aligned_cols=54 Identities=17% Similarity=0.186 Sum_probs=33.7
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE 146 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~ 146 (326)
.|..+++||||||+++.. .+-|...+-|+++.+...++|.|-- .|.
T Consensus 6 ~~~i~~~D~DGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~i~fviaTGR--~~~- 51 (245)
T PLN02423 6 PGVIALFDVDGTLTAPRK-------------------------------EATPEMLEFMKELRKVVTVGVVGGS--DLS- 51 (245)
T ss_pred cceEEEEeccCCCcCCCC-------------------------------cCCHHHHHHHHHHHhCCEEEEECCc--CHH-
Confidence 345666999999997642 1345566777777776666666543 333
Q ss_pred HHHHHhCC
Q 040058 147 AAVKLLDL 154 (326)
Q Consensus 147 ~v~~~LDP 154 (326)
.+.+.+.+
T Consensus 52 ~~~~~~~~ 59 (245)
T PLN02423 52 KISEQLGK 59 (245)
T ss_pred HHHHHhcc
Confidence 44444444
No 144
>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=88.01 E-value=0.77 Score=42.43 Aligned_cols=104 Identities=13% Similarity=0.312 Sum_probs=66.2
Q ss_pred CccccCceEEEEeCCCceeeecccCCC----Cccc--hhhhcccc-----ccccceeec-----------cc-eEEEEeC
Q 040058 62 SEQEERKLQLVLNLDHTLLHCRNIKSL----SSGE--KYLKKQIH-----SFIGSLFQM-----------AN-DKLVKLR 118 (326)
Q Consensus 62 s~~~~~Kl~LVLDLD~TLIhs~~~~~~----~~~e--~~l~~~~~-----~~~~~l~~~-----------~~-~~~vklR 118 (326)
|.+...|..+++|.|+|+|.-..+.-+ +..+ +.+..... ++...+|+. .. ---+..-
T Consensus 7 s~~~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~ 86 (256)
T KOG3120|consen 7 SASSSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIV 86 (256)
T ss_pred ccccCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Confidence 445578999999999999987654210 0000 00000000 000001100 00 2235678
Q ss_pred ccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec
Q 040058 119 PFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE 167 (326)
Q Consensus 119 Pgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd 167 (326)
||+-+.++.+++. ||+.|-+-++.-+.+.+++..+-. .+|. +|+|.-
T Consensus 87 Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~-~IfTNP 135 (256)
T KOG3120|consen 87 PGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFS-EIFTNP 135 (256)
T ss_pred ccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHH-HHhcCC
Confidence 9999999999866 899999999999999999999876 6776 577543
No 145
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=87.16 E-value=1.2 Score=39.19 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=42.4
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII 164 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~ 164 (326)
..++||+.++|+.+.+. +.++|-|++...+++++++.++-+ .+|+.++.
T Consensus 86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~~~l~ 135 (202)
T TIGR01490 86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID-NAIGTRLE 135 (202)
T ss_pred HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEecceE
Confidence 46899999999999765 999999999999999999998876 46776555
No 146
>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548. All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.
Probab=86.53 E-value=0.35 Score=42.73 Aligned_cols=15 Identities=27% Similarity=0.490 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeecc
Q 040058 70 QLVLNLDHTLLHCRN 84 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~ 84 (326)
.+++||||||++|..
T Consensus 2 ~viFD~DGTLiDs~~ 16 (197)
T TIGR01548 2 ALVLDMDGVMADVSQ 16 (197)
T ss_pred ceEEecCceEEechH
Confidence 479999999999984
No 147
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=86.39 E-value=1.5 Score=39.63 Aligned_cols=42 Identities=10% Similarity=0.096 Sum_probs=37.5
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCC
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLD 155 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~ 155 (326)
-+++|||.++|.+++.+. -..+|-++|...|..++.+.|--.
T Consensus 71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk 113 (220)
T COG4359 71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK 113 (220)
T ss_pred hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence 378999999999999877 899999999999999999877544
No 148
>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]
Probab=85.88 E-value=0.6 Score=40.28 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=48.3
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHH--HHHHH-------HhCCCCccccceEEeecCCCCCccccCCCCCCCC
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA--EAAVK-------LLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQE 184 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA--~~v~~-------~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~ 184 (326)
.+..-||.++-++++-+.|+++|-|+++..|- +.=.+ .|+|+. -++ |+. |.+-
T Consensus 66 nL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn-----~vf----Cgn---Kniv------ 127 (180)
T COG4502 66 NLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQN-----IVF----CGN---KNIV------ 127 (180)
T ss_pred hcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhh-----EEE----ecC---CCeE------
Confidence 35788999999999999999999999954332 11112 234442 233 221 2221
Q ss_pred CcEEEEeCCchhhccCCCCeEEeC
Q 040058 185 RGIVILDDTESVWSDHTENLIVLG 208 (326)
Q Consensus 185 ~~vvIvDD~~~vw~~~~~N~I~I~ 208 (326)
+.=++|||.|..-....+|-|...
T Consensus 128 kaDilIDDnp~nLE~F~G~kIlFd 151 (180)
T COG4502 128 KADILIDDNPLNLENFKGNKILFD 151 (180)
T ss_pred EeeEEecCCchhhhhccCceEEEe
Confidence 124688999877766666666543
No 149
>PLN02887 hydrolase family protein
Probab=85.63 E-value=1.8 Score=45.46 Aligned_cols=59 Identities=22% Similarity=0.264 Sum_probs=43.3
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY 144 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y 144 (326)
.+...+++||||||+++.. .+-|...+-|+++.+. ..++|.|.-...-
T Consensus 306 ~~iKLIa~DLDGTLLn~d~-------------------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~ 354 (580)
T PLN02887 306 PKFSYIFCDMDGTLLNSKS-------------------------------QISETNAKALKEALSRGVKVVIATGKARPA 354 (580)
T ss_pred cCccEEEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH
Confidence 4556889999999998642 1334455667777655 8889998888887
Q ss_pred HHHHHHHhCCC
Q 040058 145 AEAAVKLLDLD 155 (326)
Q Consensus 145 A~~v~~~LDP~ 155 (326)
+..+++.++..
T Consensus 355 i~~~l~~L~l~ 365 (580)
T PLN02887 355 VIDILKMVDLA 365 (580)
T ss_pred HHHHHHHhCcc
Confidence 88888877654
No 150
>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase. A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.
Probab=85.42 E-value=1.1 Score=44.03 Aligned_cols=53 Identities=26% Similarity=0.372 Sum_probs=45.1
Q ss_pred eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh-C-----C-CCccccceEEe
Q 040058 112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLL-D-----L-DSKYFSSRIIA 165 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~L-D-----P-~~~~F~~Ri~s 165 (326)
..|+.+-||+.++|+.+.+. ..+.|-|++...|++.+++.+ + + ...||. -|++
T Consensus 180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD-~IIt 240 (343)
T TIGR02244 180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD-VVIV 240 (343)
T ss_pred HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc-EEEe
Confidence 67888999999999999766 999999999999999999997 6 2 356786 4664
No 151
>PLN02151 trehalose-phosphatase
Probab=85.33 E-value=1.5 Score=43.30 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA 145 (326)
.+++.|+||+||||+--..+|. -+..-|.+.+-|+.+++.+.++|-|--...-.
T Consensus 96 ~~~~ll~lDyDGTL~PIv~~P~--------------------------~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l 149 (354)
T PLN02151 96 GKQIVMFLDYDGTLSPIVDDPD--------------------------RAFMSKKMRNTVRKLAKCFPTAIVSGRCREKV 149 (354)
T ss_pred CCceEEEEecCccCCCCCCCcc--------------------------cccCCHHHHHHHHHHhcCCCEEEEECCCHHHH
Confidence 6889999999999995443331 12477999999999999899999998887766
Q ss_pred HHHHH
Q 040058 146 EAAVK 150 (326)
Q Consensus 146 ~~v~~ 150 (326)
+.++.
T Consensus 150 ~~~~~ 154 (354)
T PLN02151 150 SSFVK 154 (354)
T ss_pred HHHcC
Confidence 66653
No 152
>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional
Probab=84.99 E-value=0.47 Score=41.17 Aligned_cols=17 Identities=24% Similarity=0.428 Sum_probs=14.5
Q ss_pred ceEEEEeCCCceeeecc
Q 040058 68 KLQLVLNLDHTLLHCRN 84 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~ 84 (326)
...+++|+||||++|..
T Consensus 5 ~~~viFD~DGTLiDs~~ 21 (188)
T PRK10725 5 YAGLIFDMDGTILDTEP 21 (188)
T ss_pred ceEEEEcCCCcCccCHH
Confidence 35689999999999974
No 153
>PLN03017 trehalose-phosphatase
Probab=84.50 E-value=1.7 Score=43.11 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=44.6
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA 145 (326)
.+++.|+||+||||+--..+|. ....-|.+.+-|+++++.+.++|-|--...-+
T Consensus 109 ~k~~llflD~DGTL~Piv~~p~--------------------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l 162 (366)
T PLN03017 109 GKQIVMFLDYDGTLSPIVDDPD--------------------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKV 162 (366)
T ss_pred CCCeEEEEecCCcCcCCcCCcc--------------------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHH
Confidence 6789999999999994433221 01356888899999998899999988887777
Q ss_pred HHHHH
Q 040058 146 EAAVK 150 (326)
Q Consensus 146 ~~v~~ 150 (326)
..+.+
T Consensus 163 ~~~~~ 167 (366)
T PLN03017 163 YNFVK 167 (366)
T ss_pred HHhhc
Confidence 76643
No 154
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=83.10 E-value=2.3 Score=37.43 Aligned_cols=117 Identities=9% Similarity=0.084 Sum_probs=69.4
Q ss_pred ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHH-HHHHHhhcCceEEEEcCCcHHHHH
Q 040058 68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVR-TFLEQASSLVDIYLCTMSTRCYAE 146 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~-eFL~~ls~~yEl~IyT~g~~~YA~ 146 (326)
=..+|+|.||||-.-+..-. ..++ + ..-...|-|.- ..|+ .+.+.+.|.|++...+++
T Consensus 7 i~~~v~d~dGv~tdg~~~~~-~~g~------------~------~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~~~~ 65 (169)
T TIGR02726 7 IKLVILDVDGVMTDGRIVIN-DEGI------------E------SRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSGAVR 65 (169)
T ss_pred CeEEEEeCceeeECCeEEEc-CCCc------------E------EEEEecchHHHHHHHH--HCCCEEEEEECCCcHHHH
Confidence 46789999999988753211 0010 0 11123454432 2333 245899999999999999
Q ss_pred HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcc
Q 040058 147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKY 210 (326)
Q Consensus 147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y 210 (326)
.+++.+.-. .+|.. + .. -...+..-++.++-+++.++.|.|+..=.......++.+.+-
T Consensus 66 ~~l~~lgi~-~~f~~-~--kp-kp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~ 124 (169)
T TIGR02726 66 HRAEELKIK-RFHEG-I--KK-KTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG 124 (169)
T ss_pred HHHHHCCCc-EEEec-C--CC-CHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence 999999876 56653 1 10 011122334456667788999999974333223344544443
No 155
>PLN02580 trehalose-phosphatase
Probab=83.05 E-value=2 Score=42.90 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=47.7
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA 145 (326)
.+++.|+||.||||.--..+|. -+..-|++++-|+.+++.+.++|-|--.+.-.
T Consensus 117 ~k~~~LfLDyDGTLaPIv~~Pd--------------------------~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L 170 (384)
T PLN02580 117 GKKIALFLDYDGTLSPIVDDPD--------------------------RALMSDAMRSAVKNVAKYFPTAIISGRSRDKV 170 (384)
T ss_pred cCCeEEEEecCCccCCCCCCcc--------------------------cccCCHHHHHHHHHHhhCCCEEEEeCCCHHHH
Confidence 7889999999999986554432 12577899999999999999999998888877
Q ss_pred HHHHH
Q 040058 146 EAAVK 150 (326)
Q Consensus 146 ~~v~~ 150 (326)
+..+.
T Consensus 171 ~~~l~ 175 (384)
T PLN02580 171 YELVG 175 (384)
T ss_pred HHHhC
Confidence 76664
No 156
>PRK11587 putative phosphatase; Provisional
Probab=82.64 E-value=0.66 Score=41.68 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=14.1
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++|||||||++|..
T Consensus 4 k~viFDlDGTL~Ds~~ 19 (218)
T PRK11587 4 KGFLFDLDGTLVDSLP 19 (218)
T ss_pred CEEEEcCCCCcCcCHH
Confidence 4689999999999974
No 157
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=81.36 E-value=1.8 Score=37.75 Aligned_cols=78 Identities=15% Similarity=0.128 Sum_probs=56.7
Q ss_pred eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCcc----ccCCCCCCCCCc
Q 040058 112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDR----KNPDLVRGQERG 186 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~----KdL~~l~~~~~~ 186 (326)
...-.+||++.++|+++.+. +.+.|.|..++..|..+++.+..... .++++.. ..... +-++.++.+.+.
T Consensus 123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~----~v~a~~~-~kP~~k~~~~~i~~l~~~~~~ 197 (215)
T PF00702_consen 123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS----IVFARVI-GKPEPKIFLRIIKELQVKPGE 197 (215)
T ss_dssp EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE----EEEESHE-TTTHHHHHHHHHHHHTCTGGG
T ss_pred eecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc----ccccccc-ccccchhHHHHHHHHhcCCCE
Confidence 45567899999999999987 99999999999999999999988432 2332221 11112 223345556668
Q ss_pred EEEEeCCc
Q 040058 187 IVILDDTE 194 (326)
Q Consensus 187 vvIvDD~~ 194 (326)
|++|-|..
T Consensus 198 v~~vGDg~ 205 (215)
T PF00702_consen 198 VAMVGDGV 205 (215)
T ss_dssp EEEEESSG
T ss_pred EEEEccCH
Confidence 99999876
No 158
>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein. The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.
Probab=81.14 E-value=0.54 Score=41.64 Aligned_cols=14 Identities=29% Similarity=0.465 Sum_probs=12.5
Q ss_pred EEEeCCCceeeecc
Q 040058 71 LVLNLDHTLLHCRN 84 (326)
Q Consensus 71 LVLDLD~TLIhs~~ 84 (326)
+||||||||++|..
T Consensus 1 iiFDlDGTL~Ds~~ 14 (205)
T TIGR01454 1 VVFDLDGVLVDSFA 14 (205)
T ss_pred CeecCcCccccCHH
Confidence 58999999999974
No 159
>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).
Probab=80.74 E-value=0.86 Score=40.58 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.0
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++|||||||+++..
T Consensus 3 ~~viFDlDGTL~ds~~ 18 (221)
T TIGR02253 3 KAIFFDLDDTLIDTSG 18 (221)
T ss_pred eEEEEeCCCCCcCCCC
Confidence 4689999999999874
No 160
>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase. Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.
Probab=80.31 E-value=1 Score=39.69 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeecc
Q 040058 70 QLVLNLDHTLLHCRN 84 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~ 84 (326)
.++|||||||+++..
T Consensus 2 ~viFDlDGTL~d~~~ 16 (203)
T TIGR02252 2 LITFDAVGTLLALKE 16 (203)
T ss_pred eEEEecCCceeeeCC
Confidence 589999999999863
No 161
>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).
Probab=79.93 E-value=0.86 Score=39.26 Aligned_cols=16 Identities=6% Similarity=0.333 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..+++|+||||+++..
T Consensus 2 ~~iiFD~DGTL~ds~~ 17 (185)
T TIGR02009 2 KAVIFDMDGVIVDTAP 17 (185)
T ss_pred CeEEEcCCCcccCChH
Confidence 3689999999999974
No 162
>PRK13226 phosphoglycolate phosphatase; Provisional
Probab=79.73 E-value=0.85 Score=41.44 Aligned_cols=18 Identities=28% Similarity=0.342 Sum_probs=15.1
Q ss_pred CceEEEEeCCCceeeecc
Q 040058 67 RKLQLVLNLDHTLLHCRN 84 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~ 84 (326)
....+|||+||||++|..
T Consensus 11 ~~k~viFD~DGTL~Ds~~ 28 (229)
T PRK13226 11 FPRAVLFDLDGTLLDSAP 28 (229)
T ss_pred cCCEEEEcCcCccccCHH
Confidence 345789999999999974
No 163
>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E. HAD subfamilies caused by an overly broad single model.
Probab=79.67 E-value=0.77 Score=38.51 Aligned_cols=14 Identities=21% Similarity=0.555 Sum_probs=12.7
Q ss_pred EEEEeCCCceeeec
Q 040058 70 QLVLNLDHTLLHCR 83 (326)
Q Consensus 70 ~LVLDLD~TLIhs~ 83 (326)
++++|+||||+++.
T Consensus 1 ~iifD~DGTL~d~~ 14 (154)
T TIGR01549 1 AILFDIDGTLVDSS 14 (154)
T ss_pred CeEecCCCcccccH
Confidence 47999999999996
No 164
>PRK13223 phosphoglycolate phosphatase; Provisional
Probab=79.06 E-value=0.98 Score=42.42 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.7
Q ss_pred ceEEEEeCCCceeeecc
Q 040058 68 KLQLVLNLDHTLLHCRN 84 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~ 84 (326)
...++|||||||++|..
T Consensus 13 ~k~viFDlDGTL~Ds~~ 29 (272)
T PRK13223 13 PRLVMFDLDGTLVDSVP 29 (272)
T ss_pred CCEEEEcCCCccccCHH
Confidence 35899999999999974
No 165
>TIGR01990 bPGM beta-phosphoglucomutase. The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.
Probab=79.03 E-value=0.89 Score=39.16 Aligned_cols=15 Identities=13% Similarity=0.399 Sum_probs=13.2
Q ss_pred EEEEeCCCceeeecc
Q 040058 70 QLVLNLDHTLLHCRN 84 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~ 84 (326)
.++||+||||++|..
T Consensus 1 ~iiFD~DGTL~ds~~ 15 (185)
T TIGR01990 1 AVIFDLDGVITDTAE 15 (185)
T ss_pred CeEEcCCCccccChH
Confidence 379999999999984
No 166
>PLN02770 haloacid dehalogenase-like hydrolase family protein
Probab=78.90 E-value=0.93 Score=41.82 Aligned_cols=16 Identities=19% Similarity=0.297 Sum_probs=14.2
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++|||||||++|..
T Consensus 23 k~viFDlDGTLiDs~~ 38 (248)
T PLN02770 23 EAVLFDVDGTLCDSDP 38 (248)
T ss_pred CEEEEcCCCccCcCHH
Confidence 4789999999999974
No 167
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=78.83 E-value=6.5 Score=37.46 Aligned_cols=127 Identities=14% Similarity=0.082 Sum_probs=66.9
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-c-cceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-M-ANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR 142 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~-~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~ 142 (326)
..|..+|||+|+|++....... ...+. ...+...-|. . -..---.-=|++.+|++.+.+. +.|++-|.-..
T Consensus 99 ~~~dA~V~DIDET~LsN~pY~~----~~~~g--~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~e 172 (275)
T TIGR01680 99 HEKDTFLFNIDGTALSNIPYYK----KHGYG--SEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLK 172 (275)
T ss_pred CCCCEEEEECccccccCHHHHH----HhcCC--CCcCChhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCch
Confidence 5689999999999995432110 00000 0000000000 0 0000123458999999999765 99999998887
Q ss_pred HHHHHHHHHhCCCCccccceEEeecCCCCC-----ccccCC---CCCCCCCcEEEEeCCchhhc
Q 040058 143 CYAEAAVKLLDLDSKYFSSRIIAREDFNGK-----DRKNPD---LVRGQERGIVILDDTESVWS 198 (326)
Q Consensus 143 ~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~-----~~KdL~---~l~~~~~~vvIvDD~~~vw~ 198 (326)
..-+.-++.|--.|--.-++++=|+..... -.|.-. +...+-+-+..|||+..-+.
T Consensus 173 ~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~ 236 (275)
T TIGR01680 173 DKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLK 236 (275)
T ss_pred hHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhcc
Confidence 666555666654442111356557543211 112111 12234556778899865443
No 168
>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).
Probab=78.32 E-value=0.76 Score=40.60 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=12.2
Q ss_pred EEEeCCCceeeecc
Q 040058 71 LVLNLDHTLLHCRN 84 (326)
Q Consensus 71 LVLDLD~TLIhs~~ 84 (326)
+|||+||||++|..
T Consensus 1 viFD~DGTL~Ds~~ 14 (213)
T TIGR01449 1 VLFDLDGTLVDSAP 14 (213)
T ss_pred CeecCCCccccCHH
Confidence 58999999999863
No 169
>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase. The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o
Probab=78.18 E-value=0.97 Score=38.74 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=12.6
Q ss_pred EEEeCCCceeeecc
Q 040058 71 LVLNLDHTLLHCRN 84 (326)
Q Consensus 71 LVLDLD~TLIhs~~ 84 (326)
++|||||||+++..
T Consensus 2 viFD~DGTL~D~~~ 15 (175)
T TIGR01493 2 MVFDVYGTLVDVHG 15 (175)
T ss_pred eEEecCCcCcccHH
Confidence 78999999999973
No 170
>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]
Probab=78.08 E-value=4.5 Score=38.36 Aligned_cols=59 Identities=17% Similarity=0.060 Sum_probs=46.4
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCce--EEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVD--IYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yE--l~IyT~g~~~ 143 (326)
.+|..++||.||||.+-...|.. ...=|++.+.|..|+..+. ++|.|--+..
T Consensus 16 a~~~~~~lDyDGTl~~i~~~p~~--------------------------a~~~~~l~~lL~~Las~~~~~v~iiSGR~~~ 69 (266)
T COG1877 16 ARKRLLFLDYDGTLTEIVPHPEA--------------------------AVPDDRLLSLLQDLASDPRNVVAIISGRSLA 69 (266)
T ss_pred ccceEEEEeccccccccccCccc--------------------------cCCCHHHHHHHHHHHhcCCCeEEEEeCCCHH
Confidence 78999999999999999876631 1355778888999988888 7888877777
Q ss_pred HHHHHHH
Q 040058 144 YAEAAVK 150 (326)
Q Consensus 144 YA~~v~~ 150 (326)
-.+..+.
T Consensus 70 ~l~~~~~ 76 (266)
T COG1877 70 ELERLFG 76 (266)
T ss_pred HHHHhcC
Confidence 6666665
No 171
>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase. One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.
Probab=77.84 E-value=5.2 Score=41.73 Aligned_cols=74 Identities=16% Similarity=0.199 Sum_probs=52.3
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeC
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDD 192 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD 192 (326)
.-.+||++.++|+++.+. ++++|-|...+.+|+.+++.+.-+ +|.. +. .+ ......+. +....+.+++|-|
T Consensus 403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~~~~a~~ia~~lgi~--~~~~-~~-p~-~K~~~v~~---l~~~~~~v~~VGD 474 (562)
T TIGR01511 403 EDQLRPEAKEVIQALKRRGIEPVMLTGDNRKTAKAVAKELGIN--VRAE-VL-PD-DKAALIKE---LQEKGRVVAMVGD 474 (562)
T ss_pred cccccHHHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCc--EEcc-CC-hH-HHHHHHHH---HHHcCCEEEEEeC
Confidence 347999999999999876 999999999999999999998775 4432 21 00 00011222 2234578999988
Q ss_pred Cch
Q 040058 193 TES 195 (326)
Q Consensus 193 ~~~ 195 (326)
...
T Consensus 475 g~n 477 (562)
T TIGR01511 475 GIN 477 (562)
T ss_pred CCc
Confidence 864
No 172
>COG0546 Gph Predicted phosphatases [General function prediction only]
Probab=77.82 E-value=1.2 Score=40.25 Aligned_cols=18 Identities=22% Similarity=0.316 Sum_probs=15.4
Q ss_pred ceEEEEeCCCceeeeccc
Q 040058 68 KLQLVLNLDHTLLHCRNI 85 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~ 85 (326)
..++++||||||++|...
T Consensus 4 ~~~iiFDlDGTL~Ds~~~ 21 (220)
T COG0546 4 IKAILFDLDGTLVDSAED 21 (220)
T ss_pred CCEEEEeCCCccccChHH
Confidence 468999999999999853
No 173
>PRK11590 hypothetical protein; Provisional
Probab=77.29 E-value=1.3 Score=39.76 Aligned_cols=39 Identities=26% Similarity=0.116 Sum_probs=34.2
Q ss_pred EEeCccHHHHH-HHhh-cCceEEEEcCCcHHHHHHHHHHhC
Q 040058 115 VKLRPFVRTFL-EQAS-SLVDIYLCTMSTRCYAEAAVKLLD 153 (326)
Q Consensus 115 vklRPgl~eFL-~~ls-~~yEl~IyT~g~~~YA~~v~~~LD 153 (326)
+.++||+.+.| +.+. ..+.++|-|++.+.|++++++.+.
T Consensus 94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~~~~~~~il~~l~ 134 (211)
T PRK11590 94 VTAFPVVQERLTTYLLSSDADVWLITGSPQPLVEQVYFDTP 134 (211)
T ss_pred CcCCccHHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcc
Confidence 56799999999 5676 469999999999999999999866
No 174
>PRK13478 phosphonoacetaldehyde hydrolase; Provisional
Probab=77.17 E-value=1.3 Score=41.12 Aligned_cols=15 Identities=7% Similarity=0.147 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeec
Q 040058 69 LQLVLNLDHTLLHCR 83 (326)
Q Consensus 69 l~LVLDLD~TLIhs~ 83 (326)
..++||+||||++|.
T Consensus 5 k~vIFDlDGTLiDs~ 19 (267)
T PRK13478 5 QAVIFDWAGTTVDFG 19 (267)
T ss_pred EEEEEcCCCCeecCC
Confidence 578999999999985
No 175
>PRK10748 flavin mononucleotide phosphatase; Provisional
Probab=76.76 E-value=1.2 Score=40.76 Aligned_cols=15 Identities=40% Similarity=0.552 Sum_probs=13.5
Q ss_pred eEEEEeCCCceeeec
Q 040058 69 LQLVLNLDHTLLHCR 83 (326)
Q Consensus 69 l~LVLDLD~TLIhs~ 83 (326)
..++|||||||+++.
T Consensus 11 k~iiFDlDGTL~D~~ 25 (238)
T PRK10748 11 SALTFDLDDTLYDNR 25 (238)
T ss_pred eeEEEcCcccccCCh
Confidence 479999999999986
No 176
>PLN03243 haloacid dehalogenase-like hydrolase; Provisional
Probab=76.59 E-value=1.4 Score=41.20 Aligned_cols=18 Identities=17% Similarity=0.145 Sum_probs=15.2
Q ss_pred cCceEEEEeCCCceeeec
Q 040058 66 ERKLQLVLNLDHTLLHCR 83 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~ 83 (326)
.....+||||||||++|.
T Consensus 22 ~~~k~vIFDlDGTLvDS~ 39 (260)
T PLN03243 22 CGWLGVVLEWEGVIVEDD 39 (260)
T ss_pred CCceEEEEeCCCceeCCc
Confidence 445678999999999995
No 177
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=76.54 E-value=7.4 Score=36.18 Aligned_cols=59 Identities=24% Similarity=0.208 Sum_probs=41.1
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA 145 (326)
..+.+.+|||+|||..+.+++ + +..-|.++.+. |+++..|.-++.=.
T Consensus 6 ~~~lIFtDlD~TLl~~~ye~~--p------------------------------A~pv~~el~d~G~~Vi~~SSKT~aE~ 53 (274)
T COG3769 6 MPLLIFTDLDGTLLPHSYEWQ--P------------------------------AAPVLLELKDAGVPVILCSSKTRAEM 53 (274)
T ss_pred cceEEEEcccCcccCCCCCCC--c------------------------------cchHHHHHHHcCCeEEEeccchHHHH
Confidence 457889999999998443331 1 11234445544 99999999888777
Q ss_pred HHHHHHhCCCCc
Q 040058 146 EAAVKLLDLDSK 157 (326)
Q Consensus 146 ~~v~~~LDP~~~ 157 (326)
...-+.|+-.|.
T Consensus 54 ~~l~~~l~v~~~ 65 (274)
T COG3769 54 LYLQKSLGVQGL 65 (274)
T ss_pred HHHHHhcCCCCC
Confidence 777788887764
No 178
>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase. This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.
Probab=76.12 E-value=1.6 Score=40.07 Aligned_cols=15 Identities=7% Similarity=0.120 Sum_probs=13.3
Q ss_pred eEEEEeCCCceeeec
Q 040058 69 LQLVLNLDHTLLHCR 83 (326)
Q Consensus 69 l~LVLDLD~TLIhs~ 83 (326)
..++||+||||++|.
T Consensus 3 k~viFD~DGTLiDs~ 17 (253)
T TIGR01422 3 EAVIFDWAGTTVDFG 17 (253)
T ss_pred eEEEEeCCCCeecCC
Confidence 468999999999985
No 179
>PLN02779 haloacid dehalogenase-like hydrolase family protein
Probab=74.91 E-value=1.6 Score=41.41 Aligned_cols=16 Identities=19% Similarity=0.299 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceeeec
Q 040058 68 KLQLVLNLDHTLLHCR 83 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~ 83 (326)
-..+||||||||++|.
T Consensus 40 ~k~VIFDlDGTLvDS~ 55 (286)
T PLN02779 40 PEALLFDCDGVLVETE 55 (286)
T ss_pred CcEEEEeCceeEEccc
Confidence 3578999999999998
No 180
>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II. Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.
Probab=74.37 E-value=1.5 Score=38.54 Aligned_cols=15 Identities=27% Similarity=0.432 Sum_probs=13.3
Q ss_pred EEEEeCCCceeeecc
Q 040058 70 QLVLNLDHTLLHCRN 84 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~ 84 (326)
.++||+||||+++..
T Consensus 3 ~viFD~dgTLiD~~~ 17 (198)
T TIGR01428 3 ALVFDVYGTLFDVHS 17 (198)
T ss_pred EEEEeCCCcCccHHH
Confidence 689999999999873
No 181
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=73.76 E-value=1.7 Score=36.26 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=12.5
Q ss_pred EEEeCCCceeeecc
Q 040058 71 LVLNLDHTLLHCRN 84 (326)
Q Consensus 71 LVLDLD~TLIhs~~ 84 (326)
++||+||||+++..
T Consensus 1 iifD~dgtL~d~~~ 14 (176)
T PF13419_consen 1 IIFDLDGTLVDTDP 14 (176)
T ss_dssp EEEESBTTTEEHHH
T ss_pred cEEECCCCcEeCHH
Confidence 68999999999874
No 182
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=73.63 E-value=5.4 Score=42.88 Aligned_cols=59 Identities=19% Similarity=0.139 Sum_probs=43.9
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc--CceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS--LVDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~--~yEl~IyT~g~~~ 143 (326)
.++..+++|+||||+.....+.. ...-|.+.+.|+.|++ ...++|-|.-+..
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~--------------------------~~~~~~~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPEL--------------------------AVPDKELRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred ccceEEEEecCccccCCCCCccc--------------------------CCCCHHHHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 67789999999999975433210 1255788899999987 5788999888877
Q ss_pred HHHHHHH
Q 040058 144 YAEAAVK 150 (326)
Q Consensus 144 YA~~v~~ 150 (326)
-.++.+.
T Consensus 544 ~l~~~~~ 550 (726)
T PRK14501 544 TLERWFG 550 (726)
T ss_pred HHHHHhC
Confidence 7766554
No 183
>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.
Probab=73.49 E-value=1.7 Score=38.51 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.9
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++||+||||+++..
T Consensus 2 k~viFD~DGTL~d~~~ 17 (224)
T TIGR02254 2 KTLLFDLDDTILDFQA 17 (224)
T ss_pred CEEEEcCcCcccccch
Confidence 3689999999999874
No 184
>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED. HAD subfamilies caused by an overly broad single model.
Probab=73.36 E-value=1.6 Score=37.25 Aligned_cols=15 Identities=20% Similarity=0.496 Sum_probs=13.0
Q ss_pred EEEEeCCCceeeecc
Q 040058 70 QLVLNLDHTLLHCRN 84 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~ 84 (326)
.+++||||||+++..
T Consensus 1 ~vlFDlDgtLv~~~~ 15 (183)
T TIGR01509 1 AILFDLDGVLVDTSS 15 (183)
T ss_pred CeeeccCCceechHH
Confidence 379999999999964
No 185
>PRK13222 phosphoglycolate phosphatase; Provisional
Probab=73.26 E-value=1.6 Score=38.76 Aligned_cols=16 Identities=25% Similarity=0.382 Sum_probs=13.7
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++||+||||+++..
T Consensus 7 ~~iiFD~DGTL~d~~~ 22 (226)
T PRK13222 7 RAVAFDLDGTLVDSAP 22 (226)
T ss_pred cEEEEcCCcccccCHH
Confidence 3789999999999863
No 186
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=72.67 E-value=4.7 Score=39.15 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=56.7
Q ss_pred EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec---------CCCCC-----cccc-C
Q 040058 114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE---------DFNGK-----DRKN-P 177 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd---------~~~~~-----~~Kd-L 177 (326)
.+.++||+.++|+.+.+. +.+.|.|.|...+++.+.+.++-+. .|.+++-..+ +.... ..+. +
T Consensus 179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~~~~~~~l~~~Lgld~-~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~~la 257 (322)
T PRK11133 179 NLPLMPGLTELVLKLQALGWKVAIASGGFTYFADYLRDKLRLDA-AVANELEIMDGKLTGNVLGDIVDAQYKADTLTRLA 257 (322)
T ss_pred hCCCChhHHHHHHHHHHcCCEEEEEECCcchhHHHHHHHcCCCe-EEEeEEEEECCEEEeEecCccCCcccHHHHHHHHH
Confidence 367999999999999876 9999999999999999999887652 3332221111 11110 1111 2
Q ss_pred CCCCCCCCcEEEEeCCchhh
Q 040058 178 DLVRGQERGIVILDDTESVW 197 (326)
Q Consensus 178 ~~l~~~~~~vvIvDD~~~vw 197 (326)
+.++.+++.++.|.|...=.
T Consensus 258 ~~lgi~~~qtIaVGDg~NDl 277 (322)
T PRK11133 258 QEYEIPLAQTVAIGDGANDL 277 (322)
T ss_pred HHcCCChhhEEEEECCHHHH
Confidence 34566788999999998533
No 187
>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]
Probab=72.62 E-value=1.7 Score=39.59 Aligned_cols=17 Identities=18% Similarity=0.471 Sum_probs=14.1
Q ss_pred eEEEEeCCCceeeeccc
Q 040058 69 LQLVLNLDHTLLHCRNI 85 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~~ 85 (326)
..++||||||||+|...
T Consensus 3 ~avIFD~DGvLvDse~~ 19 (221)
T COG0637 3 KAVIFDMDGTLVDSEPL 19 (221)
T ss_pred cEEEEcCCCCcCcchHH
Confidence 35899999999999643
No 188
>PRK10563 6-phosphogluconate phosphatase; Provisional
Probab=72.41 E-value=1.8 Score=38.65 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=14.2
Q ss_pred ceEEEEeCCCceeeecc
Q 040058 68 KLQLVLNLDHTLLHCRN 84 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~ 84 (326)
...++||+||||+.+..
T Consensus 4 ~~~viFD~DGTL~d~~~ 20 (221)
T PRK10563 4 IEAVFFDCDGTLVDSEV 20 (221)
T ss_pred CCEEEECCCCCCCCChH
Confidence 35789999999999863
No 189
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=71.78 E-value=2.2 Score=37.08 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=13.2
Q ss_pred eEEEEeCCCceeeec
Q 040058 69 LQLVLNLDHTLLHCR 83 (326)
Q Consensus 69 l~LVLDLD~TLIhs~ 83 (326)
..+|+|+||||+.+.
T Consensus 5 k~viFD~DGTLid~~ 19 (201)
T TIGR01491 5 KLIIFDLDGTLTDVM 19 (201)
T ss_pred eEEEEeCCCCCcCCc
Confidence 479999999999975
No 190
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=71.28 E-value=2.1 Score=38.42 Aligned_cols=16 Identities=19% Similarity=0.424 Sum_probs=14.0
Q ss_pred ceEEEEeCCCceeeec
Q 040058 68 KLQLVLNLDHTLLHCR 83 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~ 83 (326)
-..++||+||||+++.
T Consensus 7 ~k~iiFD~DGTL~d~~ 22 (222)
T PRK10826 7 ILAAIFDMDGLLIDSE 22 (222)
T ss_pred CcEEEEcCCCCCCcCH
Confidence 4578999999999986
No 191
>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase. These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.
Probab=71.22 E-value=2.3 Score=37.66 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=12.8
Q ss_pred EEEEeCCCceeeec
Q 040058 70 QLVLNLDHTLLHCR 83 (326)
Q Consensus 70 ~LVLDLD~TLIhs~ 83 (326)
.++|||||||+++.
T Consensus 4 ~viFDldGtL~d~~ 17 (211)
T TIGR02247 4 AVIFDFGGVLLPSP 17 (211)
T ss_pred EEEEecCCceecCH
Confidence 69999999999985
No 192
>PRK11590 hypothetical protein; Provisional
Probab=71.10 E-value=6.2 Score=35.38 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=13.5
Q ss_pred CceEEEEeCCCceeeec
Q 040058 67 RKLQLVLNLDHTLLHCR 83 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~ 83 (326)
.+..+++||||||++..
T Consensus 5 ~~k~~iFD~DGTL~~~d 21 (211)
T PRK11590 5 ERRVVFFDLDGTLHQQD 21 (211)
T ss_pred cceEEEEecCCCCcccc
Confidence 45589999999999443
No 193
>KOG3226 consensus DNA repair protein [Replication, recombination and repair]
Probab=70.41 E-value=3.8 Score=40.57 Aligned_cols=55 Identities=18% Similarity=0.267 Sum_probs=38.8
Q ss_pred cC-CCcEEEEcCcc-ch--HHHHHHH---H-----------------------HHhhhCCceEEchHHHHHHHHHhcCCC
Q 040058 271 EF-SRDVLYFSAIF-RD--CLWAEQE---E-----------------------KFLVQEKKFLVHPRWIDAYYFLWRRRP 320 (326)
Q Consensus 271 ~v-~g~~ivfs~~~-p~--~~~~~ae---a-----------------------~~a~~~~~~vV~p~Wl~~~~~~w~r~~ 320 (326)
++ +|+.+|+||+- |. .|..-|- | ++-..+|=.||+-.||.+|+..=++.|
T Consensus 316 klL~GVV~VlSGfqNP~Rs~LRskAl~LGAkY~pDW~~gsThLICAF~NTPKy~QV~g~Gg~IV~keWI~~Cy~~kk~lp 395 (508)
T KOG3226|consen 316 KLLEGVVFVLSGFQNPERSTLRSKALTLGAKYQPDWNAGSTHLICAFPNTPKYRQVEGNGGTIVSKEWITECYAQKKLLP 395 (508)
T ss_pred HhhhceEEEEecccCchHHHHHHHHHhhcccccCCcCCCceeEEEecCCCcchhhcccCCceEeeHHHHHHHHHHHhhcc
Confidence 45 78899999973 54 4444443 1 223345669999999999999988877
Q ss_pred CCCCC
Q 040058 321 EDDYL 325 (326)
Q Consensus 321 E~~f~ 325 (326)
-++|+
T Consensus 396 ~rrYl 400 (508)
T KOG3226|consen 396 IRRYL 400 (508)
T ss_pred HHHHH
Confidence 76663
No 194
>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]
Probab=69.84 E-value=4.1 Score=37.62 Aligned_cols=98 Identities=13% Similarity=0.065 Sum_probs=70.4
Q ss_pred eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhC-CCCccccceEEeecCCC--C------CccccCCCCC
Q 040058 112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLD-LDSKYFSSRIIAREDFN--G------KDRKNPDLVR 181 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LD-P~~~~F~~Ri~sRd~~~--~------~~~KdL~~l~ 181 (326)
...+++-||+.++++.|... -.+.++|.+++..++..++.+- +- ..|++-++ -++.. . .|.+..++|+
T Consensus 88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~~~~~~~k~~~~~~~~-~~f~~~v~-~d~~~v~~gKP~Pdi~l~A~~~l~ 165 (222)
T KOG2914|consen 88 FMNSILMPGAEKLVNHLKNNGIPVALATSSTSASFELKISRHEDIF-KNFSHVVL-GDDPEVKNGKPDPDIYLKAAKRLG 165 (222)
T ss_pred ccccccCCcHHHHHHHHHhCCCCeeEEecCCcccHHHHHHHhhHHH-HhcCCCee-cCCccccCCCCCchHHHHHHHhcC
Confidence 55678999999999999866 8999999998888887776554 54 45775444 22211 1 2567778888
Q ss_pred CCC-CcEEEEeCCchhhc---cCCCCeEEeCccc
Q 040058 182 GQE-RGIVILDDTESVWS---DHTENLIVLGKYV 211 (326)
Q Consensus 182 ~~~-~~vvIvDD~~~vw~---~~~~N~I~I~~y~ 211 (326)
... +.+++++|++.... ..--+.|.|..+.
T Consensus 166 ~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~~ 199 (222)
T KOG2914|consen 166 VPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATPD 199 (222)
T ss_pred CCCccceEEECCCHHHHHHHHhcCCeEEEecCCC
Confidence 776 99999999997553 2334566666643
No 195
>PRK09449 dUMP phosphatase; Provisional
Probab=68.17 E-value=2.5 Score=37.79 Aligned_cols=14 Identities=29% Similarity=0.470 Sum_probs=12.1
Q ss_pred eEEEEeCCCceeee
Q 040058 69 LQLVLNLDHTLLHC 82 (326)
Q Consensus 69 l~LVLDLD~TLIhs 82 (326)
..++|||||||++.
T Consensus 4 k~iiFDlDGTLid~ 17 (224)
T PRK09449 4 DWILFDADETLFHF 17 (224)
T ss_pred cEEEEcCCCchhcc
Confidence 46899999999974
No 196
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=67.48 E-value=7.5 Score=35.12 Aligned_cols=37 Identities=32% Similarity=0.195 Sum_probs=33.0
Q ss_pred EEeCccHHHHHH-Hhh-cCceEEEEcCCcHHHHHHHHHH
Q 040058 115 VKLRPFVRTFLE-QAS-SLVDIYLCTMSTRCYAEAAVKL 151 (326)
Q Consensus 115 vklRPgl~eFL~-~ls-~~yEl~IyT~g~~~YA~~v~~~ 151 (326)
+.++||+.+.|+ .+. +-+.++|-|++.+.|++++++.
T Consensus 93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~~~~~~~ia~~ 131 (210)
T TIGR01545 93 VTAFPLVAERLRQYLESSDADIWLITGSPQPLVEAVYFD 131 (210)
T ss_pred CCCCccHHHHHHHHHHhCCCEEEEEcCCcHHHHHHHHHh
Confidence 367999999996 777 5799999999999999999976
No 197
>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated
Probab=66.95 E-value=2.5 Score=42.76 Aligned_cols=16 Identities=25% Similarity=0.528 Sum_probs=14.2
Q ss_pred eEEEEeCCCceeeecc
Q 040058 69 LQLVLNLDHTLLHCRN 84 (326)
Q Consensus 69 l~LVLDLD~TLIhs~~ 84 (326)
..++|||||||++|..
T Consensus 242 k~vIFDlDGTLiDs~~ 257 (459)
T PRK06698 242 QALIFDMDGTLFQTDK 257 (459)
T ss_pred hheeEccCCceecchh
Confidence 5789999999999974
No 198
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=66.07 E-value=10 Score=35.53 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=31.8
Q ss_pred eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh
Q 040058 112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLL 152 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~L 152 (326)
..-+.+|.|+.+|++.+.+. --+.||+||--.-.+.+++.-
T Consensus 86 ~s~i~LRdg~~~~f~~L~~~~IP~lIFSAGlgdvI~~vL~q~ 127 (246)
T PF05822_consen 86 ESDIMLRDGVEEFFDKLEEHNIPLLIFSAGLGDVIEEVLRQA 127 (246)
T ss_dssp CS---B-BTHHHHHHHHHCTT--EEEEEEEEHHHHHHHHHHT
T ss_pred hcchhhhcCHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHc
Confidence 33578999999999999987 899999999999999999875
No 199
>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []. SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....
Probab=66.02 E-value=7.9 Score=35.86 Aligned_cols=55 Identities=18% Similarity=0.076 Sum_probs=34.7
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHH-HhhcCceEEEEcCCcHHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLE-QASSLVDIYLCTMSTRCYA 145 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~-~ls~~yEl~IyT~g~~~YA 145 (326)
.++.|+-|||+||+... . .-+.-+.++|+ ......-+++-|--+..-+
T Consensus 1 ~~~ll~sDlD~Tl~~~~-------~------------------------~~~~~l~~~l~~~~~~~~~~v~~TGRs~~~~ 49 (247)
T PF05116_consen 1 PPRLLASDLDGTLIDGD-------D------------------------EALARLEELLEQQARPEILFVYVTGRSLESV 49 (247)
T ss_dssp -SEEEEEETBTTTBHCH-------H------------------------HHHHHHHHHHHHHHCCGEEEEEE-SS-HHHH
T ss_pred CCEEEEEECCCCCcCCC-------H------------------------HHHHHHHHHHHHhhCCCceEEEECCCCHHHH
Confidence 47889999999999100 0 12344566777 4445567777777777777
Q ss_pred HHHHHHh
Q 040058 146 EAAVKLL 152 (326)
Q Consensus 146 ~~v~~~L 152 (326)
..+++..
T Consensus 50 ~~~~~~~ 56 (247)
T PF05116_consen 50 LRLLREY 56 (247)
T ss_dssp HHHHHHC
T ss_pred HHHHHhC
Confidence 7777753
No 200
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=65.38 E-value=14 Score=32.28 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=40.7
Q ss_pred EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058 70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA 148 (326)
Q Consensus 70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v 148 (326)
++|.|+||||--|.....+. ..-+. =+.+||+.++...+++. |.+.=-|+-.-.-|...
T Consensus 1 VVvsDIDGTiT~SD~~G~i~------------------~~~G~--d~~h~g~~~l~~~i~~~GY~ilYlTaRp~~qa~~T 60 (157)
T PF08235_consen 1 VVVSDIDGTITKSDVLGHIL------------------PILGK--DWTHPGAAELYRKIADNGYKILYLTARPIGQANRT 60 (157)
T ss_pred CEEEeccCCcCccchhhhhh------------------hccCc--hhhhhcHHHHHHHHHHCCeEEEEECcCcHHHHHHH
Confidence 47899999998885321110 00000 16899999999999887 87766666555555554
Q ss_pred HHHh
Q 040058 149 VKLL 152 (326)
Q Consensus 149 ~~~L 152 (326)
-+.|
T Consensus 61 r~~L 64 (157)
T PF08235_consen 61 RSWL 64 (157)
T ss_pred HHHH
Confidence 4444
No 201
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=63.25 E-value=7.5 Score=33.36 Aligned_cols=39 Identities=15% Similarity=0.180 Sum_probs=33.5
Q ss_pred eCccHH----HHHHHhh-cCceEEEEcCCcHHHHHHHHHHhCCC
Q 040058 117 LRPFVR----TFLEQAS-SLVDIYLCTMSTRCYAEAAVKLLDLD 155 (326)
Q Consensus 117 lRPgl~----eFL~~ls-~~yEl~IyT~g~~~YA~~v~~~LDP~ 155 (326)
++|++. +||+++. ..++++|-|++...+++++++.+.-.
T Consensus 86 ~~~~~~~~~~e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~ 129 (192)
T PF12710_consen 86 LFPGFIPDAMELIRELKDNGIKVVIVSGSPDEIIEPIAERLGID 129 (192)
T ss_dssp HCTTCHTTHHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSS
T ss_pred cCcCchhhHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 456666 9999984 56999999999999999999987755
No 202
>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=62.96 E-value=5.3 Score=37.25 Aligned_cols=77 Identities=10% Similarity=-0.058 Sum_probs=58.0
Q ss_pred CccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcEEEEe
Q 040058 118 RPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGIVILD 191 (326)
Q Consensus 118 RPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~vvIvD 191 (326)
=.+..++|+++.+. +.|.|.||..+.+= .++..++-. .+|+.-+.|.+.... -+.+-|++++..++.+|.||
T Consensus 115 ~~~~~~~lq~lR~~g~~l~iisN~d~r~~-~~l~~~~l~-~~fD~vv~S~e~g~~KPDp~If~~al~~l~v~Pee~vhIg 192 (237)
T KOG3085|consen 115 LDGMQELLQKLRKKGTILGIISNFDDRLR-LLLLPLGLS-AYFDFVVESCEVGLEKPDPRIFQLALERLGVKPEECVHIG 192 (237)
T ss_pred ccHHHHHHHHHHhCCeEEEEecCCcHHHH-HHhhccCHH-HhhhhhhhhhhhccCCCChHHHHHHHHHhCCChHHeEEec
Confidence 34455999999866 89999999999887 677666666 688865555443321 26677888888899999999
Q ss_pred CCchh
Q 040058 192 DTESV 196 (326)
Q Consensus 192 D~~~v 196 (326)
|+...
T Consensus 193 D~l~n 197 (237)
T KOG3085|consen 193 DLLEN 197 (237)
T ss_pred Ccccc
Confidence 99865
No 203
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=62.67 E-value=10 Score=34.39 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=10.7
Q ss_pred EEEeCCCceeee
Q 040058 71 LVLNLDHTLLHC 82 (326)
Q Consensus 71 LVLDLD~TLIhs 82 (326)
++.||||||+++
T Consensus 2 i~~DlDgTLl~~ 13 (236)
T TIGR02471 2 IITDLDNTLLGD 13 (236)
T ss_pred eEEeccccccCC
Confidence 688999999984
No 204
>PRK13582 thrH phosphoserine phosphatase; Provisional
Probab=61.68 E-value=4.3 Score=35.62 Aligned_cols=11 Identities=27% Similarity=0.522 Sum_probs=10.3
Q ss_pred EEEEeCCCcee
Q 040058 70 QLVLNLDHTLL 80 (326)
Q Consensus 70 ~LVLDLD~TLI 80 (326)
.+++||||||+
T Consensus 3 ~v~FD~DGTL~ 13 (205)
T PRK13582 3 IVCLDLEGVLV 13 (205)
T ss_pred EEEEeCCCCCh
Confidence 68999999999
No 205
>PLN02382 probable sucrose-phosphatase
Probab=61.53 E-value=4.5 Score=40.62 Aligned_cols=18 Identities=33% Similarity=0.608 Sum_probs=15.5
Q ss_pred cCceEEEEeCCCceeeec
Q 040058 66 ERKLQLVLNLDHTLLHCR 83 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~ 83 (326)
..++.|+.||||||+.+.
T Consensus 7 ~~~~lI~sDLDGTLL~~~ 24 (413)
T PLN02382 7 SPRLMIVSDLDHTMVDHH 24 (413)
T ss_pred CCCEEEEEcCCCcCcCCC
Confidence 568999999999999763
No 206
>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase. This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.
Probab=61.15 E-value=12 Score=38.95 Aligned_cols=77 Identities=17% Similarity=0.211 Sum_probs=55.3
Q ss_pred eEEEEeCccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEE
Q 040058 112 DKLVKLRPFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVI 189 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvI 189 (326)
.....+|||+.+.|+++.+. ++++|-|...+.+|+.+++.++-+ .+|. ++.. ++ -.+-++.+......+++
T Consensus 380 ~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~~~~a~~i~~~lgi~-~~f~-~~~p-~~----K~~~v~~l~~~~~~v~~ 452 (556)
T TIGR01525 380 ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDNRSAAEAVAAELGID-EVHA-ELLP-ED----KLAIVKELQEEGGVVAM 452 (556)
T ss_pred EecccchHhHHHHHHHHHHcCCCeEEEEeCCCHHHHHHHHHHhCCC-eeec-cCCH-HH----HHHHHHHHHHcCCEEEE
Confidence 44567999999999999754 899999999999999999999986 5665 3321 10 01112223334458999
Q ss_pred EeCCch
Q 040058 190 LDDTES 195 (326)
Q Consensus 190 vDD~~~ 195 (326)
|-|...
T Consensus 453 vGDg~n 458 (556)
T TIGR01525 453 VGDGIN 458 (556)
T ss_pred EECChh
Confidence 999874
No 207
>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase. .
Probab=60.66 E-value=10 Score=39.20 Aligned_cols=77 Identities=16% Similarity=0.186 Sum_probs=56.8
Q ss_pred eEEEEeCccHHHHHHHhhcC-c-eEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEE
Q 040058 112 DKLVKLRPFVRTFLEQASSL-V-DIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVI 189 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-y-El~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvI 189 (326)
.....+|||+.+.|+++.+. + .++|-|+..+.+|+.+++.+..+ .+|.. +. .+ .-.+-++.+....+.+++
T Consensus 358 ~~~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~~~~a~~i~~~lgi~-~~f~~-~~-p~----~K~~~i~~l~~~~~~v~~ 430 (536)
T TIGR01512 358 LLSDEPRPDAAEAIAELKALGIEKVVMLTGDRRAVAERVARELGID-EVHAE-LL-PE----DKLEIVKELREKYGPVAM 430 (536)
T ss_pred EEeccchHHHHHHHHHHHHcCCCcEEEEcCCCHHHHHHHHHHcCCh-hhhhc-cC-cH----HHHHHHHHHHhcCCEEEE
Confidence 44568999999999999876 8 99999999999999999999886 45652 32 11 111222333445578999
Q ss_pred EeCCch
Q 040058 190 LDDTES 195 (326)
Q Consensus 190 vDD~~~ 195 (326)
|-|...
T Consensus 431 vGDg~n 436 (536)
T TIGR01512 431 VGDGIN 436 (536)
T ss_pred EeCCHH
Confidence 999864
No 208
>PLN03123 poly [ADP-ribose] polymerase; Provisional
Probab=59.12 E-value=14 Score=41.24 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=42.3
Q ss_pred ccC-CCcEEEEcCccch--HHHH-HHH-----------------------------HHHhhhCCceEEchHHHHHHHHHh
Q 040058 270 SEF-SRDVLYFSAIFRD--CLWA-EQE-----------------------------EKFLVQEKKFLVHPRWIDAYYFLW 316 (326)
Q Consensus 270 ~~v-~g~~ivfs~~~p~--~~~~-~ae-----------------------------a~~a~~~~~~vV~p~Wl~~~~~~w 316 (326)
... +|.+|+++|-++. .-|+ +-| .+.|+..|++||+.+||.+|...=
T Consensus 391 ~~~l~~~~i~i~G~~~~~~~~~k~~Ie~~GG~~s~~v~~~~t~l~tt~e~~k~~~kv~qAk~~~ipIVsedwL~ds~~~~ 470 (981)
T PLN03123 391 SEFLGDLKVSIVGASKEKVTEWKAKIEEAGGVFHATVKKDTNCLVVCGELDDEDAEMRKARRMKIPIVREDYLVDCFKKK 470 (981)
T ss_pred CCCcCCeEEEEecCCCCcHHHHHHHHHhcCCEEeeeccCCceEEEccHHhhhcchHHHHHHhcCCCcccHHHHHHHHhcc
Confidence 344 9999999999876 4442 111 346778899999999999999888
Q ss_pred cCCCCCCC
Q 040058 317 RRRPEDDY 324 (326)
Q Consensus 317 ~r~~E~~f 324 (326)
.|.++..|
T Consensus 471 ~~~p~~~y 478 (981)
T PLN03123 471 KKLPFDKY 478 (981)
T ss_pred ccCcchhh
Confidence 78777765
No 209
>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein. This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).
Probab=56.71 E-value=5.6 Score=35.84 Aligned_cols=13 Identities=23% Similarity=0.261 Sum_probs=11.2
Q ss_pred EEEEeCCCceeee
Q 040058 70 QLVLNLDHTLLHC 82 (326)
Q Consensus 70 ~LVLDLD~TLIhs 82 (326)
..+||||||||..
T Consensus 3 la~FDlD~TLi~~ 15 (203)
T TIGR02137 3 IACLDLEGVLVPE 15 (203)
T ss_pred EEEEeCCcccHHH
Confidence 3799999999965
No 210
>PRK09456 ?-D-glucose-1-phosphatase; Provisional
Probab=53.95 E-value=7 Score=34.42 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=12.4
Q ss_pred EEEEeCCCceeeec
Q 040058 70 QLVLNLDHTLLHCR 83 (326)
Q Consensus 70 ~LVLDLD~TLIhs~ 83 (326)
.+||||||||++..
T Consensus 2 ~viFDldgvL~d~~ 15 (199)
T PRK09456 2 LYIFDLGNVIVDID 15 (199)
T ss_pred EEEEeCCCccccCc
Confidence 58999999999874
No 211
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=51.82 E-value=8.7 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=14.3
Q ss_pred ceEEEEeCCCceeeecc
Q 040058 68 KLQLVLNLDHTLLHCRN 84 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~ 84 (326)
...+++|+||||++...
T Consensus 4 ~k~i~FD~d~TL~d~~~ 20 (229)
T COG1011 4 IKAILFDLDGTLLDFDS 20 (229)
T ss_pred eeEEEEecCCcccccch
Confidence 45789999999999864
No 212
>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB. The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.
Probab=50.02 E-value=8.8 Score=34.67 Aligned_cols=18 Identities=28% Similarity=0.287 Sum_probs=14.9
Q ss_pred ceEEEEeCCCceeeeccc
Q 040058 68 KLQLVLNLDHTLLHCRNI 85 (326)
Q Consensus 68 Kl~LVLDLD~TLIhs~~~ 85 (326)
|...++|+||||++....
T Consensus 5 ~~la~FDfDgTLt~~ds~ 22 (210)
T TIGR01545 5 KRIIFFDLDGTLHQQDMF 22 (210)
T ss_pred CcEEEEcCCCCCccCccH
Confidence 566899999999998644
No 213
>PLN03122 Poly [ADP-ribose] polymerase; Provisional
Probab=49.20 E-value=26 Score=38.45 Aligned_cols=56 Identities=13% Similarity=0.043 Sum_probs=40.5
Q ss_pred ccC-CCcEEEEcCccch--H-HHHHHH------------------------------HHHhhhCCceEEchHHHHHHHHH
Q 040058 270 SEF-SRDVLYFSAIFRD--C-LWAEQE------------------------------EKFLVQEKKFLVHPRWIDAYYFL 315 (326)
Q Consensus 270 ~~v-~g~~ivfs~~~p~--~-~~~~ae------------------------------a~~a~~~~~~vV~p~Wl~~~~~~ 315 (326)
... .|..|+|+|-++. . +=.+.| .+.|++.|++||+.+||.+|...
T Consensus 187 ~kpL~G~~fviTGtl~~sr~elK~~Ie~~GGkvsssVs~~T~lIvt~~ev~k~gsSKlkkAk~lgIpIVsEd~L~d~i~~ 266 (815)
T PLN03122 187 GKPFSGMMISLSGRLSRTHQYWKKDIEKHGGKVANSVEGVTCLVVSPAERERGGSSKIAEAMERGIPVVREAWLIDSIEK 266 (815)
T ss_pred CCCcCCcEEEEeCCCCCCHHHHHHHHHHcCCEEccccccceEEEEcCccccccCccHHHHHHHcCCcCccHHHHHHHHhc
Confidence 344 9999999998864 1 222222 24577789999999999999988
Q ss_pred hcCCCCCCCC
Q 040058 316 WRRRPEDDYL 325 (326)
Q Consensus 316 w~r~~E~~f~ 325 (326)
=+.+++..|.
T Consensus 267 ~k~~~~~~y~ 276 (815)
T PLN03122 267 QEAQPLEAYD 276 (815)
T ss_pred CCcccchhhh
Confidence 7666766553
No 214
>PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a zinc finger motif found in transcription factor IIB (TFIIB). In eukaryotes the initiation of transcription of protein encoding genes by the polymerase II complexe (Pol II) is modulated by general and specific transcription factors. The general transcription factors operate through common promoters elements (such as the TATA box). At least seven different proteins associate to form the general transcription factors: TFIIA, -IIB, -IID, -IIE, -IIF, -IIG, and -IIH []. TFIIB and TFIID are responsible for promoter recognition and interaction with pol II; together with Pol II, they form a minimal initiation complex capable of transcription under certain conditions. The TATA box of a Pol II promoter is bound in the initiation complex by the TBP subunit of TFIID, which bends the DNA around the C-terminal domain of TFIIB whereas the N-terminal zinc finger of TFIIB interacts with Pol II [, ]. The TFIIB zinc finger adopts a zinc ribbon fold characterised by two beta-hairpins forming two structurally similar zinc-binding sub-sites []. The zinc finger contacts the rbp1 subunit of Pol II through its dock domain, a conserved region of about 70 amino acids located close to the polymerase active site []. In the Pol II complex this surface is located near the RNA exit groove. Interestingly this sequence is best conserved in the three polymerases that utilise a TFIIB-like general transcription factor (Pol II, Pol III, and archaeal RNA polymerase) but not in Pol I []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1VD4_A 1PFT_A 3K1F_M 3K7A_M 1RO4_A 1RLY_A 1DL6_A.
Probab=49.11 E-value=6.7 Score=26.36 Aligned_cols=33 Identities=18% Similarity=0.490 Sum_probs=20.4
Q ss_pred cchhhhhcccccccccccccCCCCCcccccccccccccccccccc
Q 040058 4 YSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSF 48 (326)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~C~H~~~~~~~C~~Cg~~~~~~~ 48 (326)
|.|+.|.+++ ++.+. ..-.-.|..||.-+++..
T Consensus 1 m~Cp~Cg~~~-~~~D~-----------~~g~~vC~~CG~Vl~e~~ 33 (43)
T PF08271_consen 1 MKCPNCGSKE-IVFDP-----------ERGELVCPNCGLVLEENI 33 (43)
T ss_dssp ESBTTTSSSE-EEEET-----------TTTEEEETTT-BBEE-TT
T ss_pred CCCcCCcCCc-eEEcC-----------CCCeEECCCCCCEeeccc
Confidence 6789998765 54442 122348999999887653
No 215
>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3.1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.
Probab=48.96 E-value=18 Score=32.87 Aligned_cols=50 Identities=16% Similarity=0.091 Sum_probs=30.0
Q ss_pred EEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCce--EEEEcCCcHHHHHH
Q 040058 72 VLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVD--IYLCTMSTRCYAEA 147 (326)
Q Consensus 72 VLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yE--l~IyT~g~~~YA~~ 147 (326)
.||.||||.--...|. -...-|++.+.|+.|+.... ++|-|.-+..-.+.
T Consensus 1 ~lDyDGTL~p~~~~p~--------------------------~~~~~~~~~~~L~~La~~~~~~v~IvSGR~~~~~~~ 52 (235)
T PF02358_consen 1 FLDYDGTLAPIVDDPD--------------------------AAVPPPELRELLRALAADPNNTVAIVSGRSLDDLER 52 (235)
T ss_dssp EEE-TTTSS---S-GG--------------------------G----HHHHHHHHHHHHHSE--EEEE-SS-HHHHHH
T ss_pred CcccCCccCCCCCCcc--------------------------ccCCCHHHHHHHHHHhccCCCEEEEEEeCCHHHhHH
Confidence 4899999997665431 12578999999999998866 88887777766333
No 216
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=46.25 E-value=9.4 Score=32.41 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=12.1
Q ss_pred EEEeCCCceeeecc
Q 040058 71 LVLNLDHTLLHCRN 84 (326)
Q Consensus 71 LVLDLD~TLIhs~~ 84 (326)
.|+|+||||+....
T Consensus 2 ~~fD~DgTl~~~~s 15 (177)
T TIGR01488 2 AIFDFDGTLTRQDS 15 (177)
T ss_pred EEecCccccccchh
Confidence 68999999998764
No 217
>PRK11133 serB phosphoserine phosphatase; Provisional
Probab=45.39 E-value=12 Score=36.23 Aligned_cols=17 Identities=24% Similarity=0.344 Sum_probs=14.3
Q ss_pred cCceEEEEeCCCceeee
Q 040058 66 ERKLQLVLNLDHTLLHC 82 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs 82 (326)
.++..+|+|+|+|||..
T Consensus 108 ~~~~LvvfDmDGTLI~~ 124 (322)
T PRK11133 108 RTPGLLVMDMDSTAIQI 124 (322)
T ss_pred cCCCEEEEECCCCCcch
Confidence 56788899999999954
No 218
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=44.83 E-value=19 Score=39.76 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=37.7
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC--ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL--VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~--yEl~IyT~g~~~ 143 (326)
.++..|+||+||||+...... ...-|++.+-|+.|++. -.++|-|--.+.
T Consensus 594 ~~~rlI~LDyDGTLlp~~~~~----------------------------~~p~~~~~~~L~~L~~d~g~~VaIvSGR~~~ 645 (854)
T PLN02205 594 TTTRAILLDYDGTLMPQASID----------------------------KSPSSKSIDILNTLCRDKNNMVFIVSARSRK 645 (854)
T ss_pred hcCeEEEEecCCcccCCcccc----------------------------CCCCHHHHHHHHHHHhcCCCEEEEEeCCCHH
Confidence 577889999999999543110 02346888889988543 667777666665
Q ss_pred HHHHHHH
Q 040058 144 YAEAAVK 150 (326)
Q Consensus 144 YA~~v~~ 150 (326)
-.+....
T Consensus 646 ~L~~~f~ 652 (854)
T PLN02205 646 TLADWFS 652 (854)
T ss_pred HHHHHhC
Confidence 5554443
No 219
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=44.40 E-value=11 Score=32.22 Aligned_cols=13 Identities=23% Similarity=0.508 Sum_probs=11.7
Q ss_pred EEEeCCCceeeec
Q 040058 71 LVLNLDHTLLHCR 83 (326)
Q Consensus 71 LVLDLD~TLIhs~ 83 (326)
+++|+||||+.+.
T Consensus 1 v~fD~DGTL~~~~ 13 (192)
T PF12710_consen 1 VIFDFDGTLTDSD 13 (192)
T ss_dssp EEEESBTTTBSSH
T ss_pred eEEecCcCeecCC
Confidence 5899999999987
No 220
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=44.20 E-value=11 Score=33.04 Aligned_cols=13 Identities=23% Similarity=0.250 Sum_probs=11.6
Q ss_pred EEEeCCCceeeec
Q 040058 71 LVLNLDHTLLHCR 83 (326)
Q Consensus 71 LVLDLD~TLIhs~ 83 (326)
.++|+||||+...
T Consensus 2 a~FD~DgTL~~~~ 14 (202)
T TIGR01490 2 AFFDFDGTLTAKD 14 (202)
T ss_pred eEEccCCCCCCCc
Confidence 6899999999975
No 221
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=43.66 E-value=43 Score=36.65 Aligned_cols=62 Identities=18% Similarity=0.154 Sum_probs=44.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC--ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL--VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~--yEl~IyT~g~~~ 143 (326)
.++..|+||.||||+.-...+. . ..-+..-|++.+-|+.|++. -.++|-|--+++
T Consensus 505 a~~rll~LDyDGTL~~~~~~~~-~----------------------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~~~ 561 (797)
T PLN03063 505 SNNRLLILGFYGTLTEPRNSQI-K----------------------EMDLGLHPELKETLKALCSDPKTTVVVLSRSGKD 561 (797)
T ss_pred ccCeEEEEecCccccCCCCCcc-c----------------------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCCHH
Confidence 6788999999999995432221 0 01124678999999999865 678888887777
Q ss_pred HHHHHHH
Q 040058 144 YAEAAVK 150 (326)
Q Consensus 144 YA~~v~~ 150 (326)
-.+..+.
T Consensus 562 ~L~~~~~ 568 (797)
T PLN03063 562 ILDKNFG 568 (797)
T ss_pred HHHHHhC
Confidence 6666664
No 222
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=41.86 E-value=54 Score=30.04 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=41.8
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC-ccccceEE
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS-KYFSSRII 164 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~-~~F~~Ri~ 164 (326)
..+-||++|+-..|.+. ..+++-+-|-+..+..|.+.|+... ..|.+++.
T Consensus 87 ~~lT~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 87 PTLTPGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred CccCCCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcHhhhhhheee
Confidence 35789999999999866 9999999999999999999998763 24555554
No 223
>PF05864 Chordopox_RPO7: Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide (RPO7); InterPro: IPR008448 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several Chordopoxvirus DNA-directed RNA polymerase 7 kDa polypeptide sequences. DNA-dependent RNA polymerase catalyses the transcription of DNA into RNA [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=37.69 E-value=11 Score=27.38 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.3
Q ss_pred ccccccccccccccccc
Q 040058 32 VRDSRCIFCSQAMNDSF 48 (326)
Q Consensus 32 ~~~~~C~~Cg~~~~~~~ 48 (326)
++.-.|..||.|++++.
T Consensus 2 Vf~lvCSTCGrDlSeeR 18 (63)
T PF05864_consen 2 VFQLVCSTCGRDLSEER 18 (63)
T ss_pred eeeeeecccCCcchHHH
Confidence 56678999999999874
No 224
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=36.85 E-value=18 Score=21.21 Aligned_cols=19 Identities=16% Similarity=0.468 Sum_probs=9.7
Q ss_pred CCCccccc-ccccccccccc
Q 040058 26 SCAHTTVR-DSRCIFCSQAM 44 (326)
Q Consensus 26 ~C~H~~~~-~~~C~~Cg~~~ 44 (326)
.|.+.+.. ...|..||.++
T Consensus 4 ~CG~~~~~~~~fC~~CG~~l 23 (23)
T PF13240_consen 4 NCGAEIEDDAKFCPNCGTPL 23 (23)
T ss_pred ccCCCCCCcCcchhhhCCcC
Confidence 34444443 33566666553
No 225
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=36.67 E-value=69 Score=35.78 Aligned_cols=70 Identities=19% Similarity=0.191 Sum_probs=48.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC--ceEEEEcCCcHH
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL--VDIYLCTMSTRC 143 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~--yEl~IyT~g~~~ 143 (326)
.++..|+||.||||+--...|.-.. .++. .+.+..-|++.+-|+.|+.. -.++|-|--+++
T Consensus 589 a~~RLlfLDyDGTLap~~~~P~~~~------~~~~-----------~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~~~ 651 (934)
T PLN03064 589 SNNRLLILGFNATLTEPVDTPGRRG------DQIK-----------EMELRLHPELKEPLRALCSDPKTTIVVLSGSDRS 651 (934)
T ss_pred ccceEEEEecCceeccCCCCccccc------cccc-----------ccccCCCHHHHHHHHHHHhCCCCeEEEEeCCCHH
Confidence 6788999999999997654442000 0000 11234568899999999865 789999988888
Q ss_pred HHHHHHHHh
Q 040058 144 YAEAAVKLL 152 (326)
Q Consensus 144 YA~~v~~~L 152 (326)
-.+..+..+
T Consensus 652 ~Le~~fg~~ 660 (934)
T PLN03064 652 VLDENFGEF 660 (934)
T ss_pred HHHHHhCCC
Confidence 777776543
No 226
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=36.34 E-value=18 Score=40.72 Aligned_cols=20 Identities=10% Similarity=0.240 Sum_probs=15.8
Q ss_pred cCceEEEEeCCCceeeeccc
Q 040058 66 ERKLQLVLNLDHTLLHCRNI 85 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~ 85 (326)
.+-..++|||||||++|...
T Consensus 73 ~~ikaVIFDlDGTLiDS~~~ 92 (1057)
T PLN02919 73 GKVSAVLFDMDGVLCNSEEP 92 (1057)
T ss_pred CCCCEEEECCCCCeEeChHH
Confidence 34457899999999999743
No 227
>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]
Probab=35.22 E-value=56 Score=32.78 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=35.3
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCc
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMST 141 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~ 141 (326)
......-+|||+|||.+....- |.....-|..+-|.+..=|+++.+ .|-++|+|+..
T Consensus 73 ~~~K~i~FD~dgtlI~t~sg~v-------------------f~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~ 130 (422)
T KOG2134|consen 73 GGSKIIMFDYDGTLIDTKSGKV-------------------FPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQN 130 (422)
T ss_pred CCcceEEEecCCceeecCCcce-------------------eeccCccceeeccccchhhhhhccCCeEEEEEeccc
Confidence 5567788999999999975321 000000122344555555666654 49999999854
No 228
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=34.93 E-value=21 Score=38.73 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=24.3
Q ss_pred CceEEchHHHHHHHHHhcCCCCCCCC
Q 040058 300 KKFLVHPRWIDAYYFLWRRRPEDDYL 325 (326)
Q Consensus 300 ~~~vV~p~Wl~~~~~~w~r~~E~~f~ 325 (326)
+.+||.|+|+..|.-.-+.++|+.|+
T Consensus 856 ~rkv~~~~wv~~s~~~~~~~~e~~~~ 881 (881)
T KOG0966|consen 856 KRKVVAPSWVDHSINENCLLPEEDFP 881 (881)
T ss_pred cccccCHHHHHHhhcccccCccccCC
Confidence 44999999999999999999999996
No 229
>PF13701 DDE_Tnp_1_4: Transposase DDE domain group 1
Probab=33.80 E-value=61 Score=32.96 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=48.0
Q ss_pred cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec--c-c-eEEEEeCcc-------HHHHHHHhhcCc--
Q 040058 66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM--A-N-DKLVKLRPF-------VRTFLEQASSLV-- 132 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~--~-~-~~~vklRPg-------l~eFL~~ls~~y-- 132 (326)
..+-.+|||+|.|.....-..+......|. ..+.+ -.++-+ . + -.-..+||| ..+||+.+-+.+
T Consensus 137 ~~~~~i~LDiD~T~~~~~G~Qe~~~~n~y~--g~~gY-~PL~~f~g~~G~~l~a~LRpGn~~sa~g~~~fL~~~l~~lr~ 213 (448)
T PF13701_consen 137 KPPKEIVLDIDSTVDDVHGEQEGAVFNTYY--GEDGY-HPLVAFDGQTGYLLAAELRPGNVHSAKGAAEFLKRVLRRLRQ 213 (448)
T ss_pred cccceEEEecccccccchhhcccccccccC--CCccc-ccceeccCCCCceEEEEccCCCCChHHHHHHHHHHHHHHHhh
Confidence 456889999999985544322211111111 11111 122222 1 2 556789998 566766654332
Q ss_pred ---eE-EEEcCCcHHHHHHHHHHhCCCCccc
Q 040058 133 ---DI-YLCTMSTRCYAEAAVKLLDLDSKYF 159 (326)
Q Consensus 133 ---El-~IyT~g~~~YA~~v~~~LDP~~~~F 159 (326)
+. +++=+-+--+...+++.+.-.|..|
T Consensus 214 ~~~~~~ILvR~DSgF~~~el~~~ce~~g~~y 244 (448)
T PF13701_consen 214 RWPDTRILVRGDSGFASPELMDWCEAEGVDY 244 (448)
T ss_pred hCccceEEEEecCccCcHHHHHHHHhCCCeE
Confidence 22 3344444455667888887776543
No 230
>PHA03082 DNA-dependent RNA polymerase subunit; Provisional
Probab=33.76 E-value=14 Score=26.89 Aligned_cols=17 Identities=18% Similarity=0.413 Sum_probs=14.3
Q ss_pred ccccccccccccccccc
Q 040058 32 VRDSRCIFCSQAMNDSF 48 (326)
Q Consensus 32 ~~~~~C~~Cg~~~~~~~ 48 (326)
++.-.|..||.|++++.
T Consensus 2 Vf~lVCsTCGrDlSeeR 18 (63)
T PHA03082 2 VFQLVCSTCGRDLSEER 18 (63)
T ss_pred eeeeeecccCcchhHHH
Confidence 55678999999999874
No 231
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=32.95 E-value=18 Score=28.80 Aligned_cols=23 Identities=17% Similarity=0.537 Sum_probs=15.9
Q ss_pred CCCcccccccccccccccccccc
Q 040058 26 SCAHTTVRDSRCIFCSQAMNDSF 48 (326)
Q Consensus 26 ~C~H~~~~~~~C~~Cg~~~~~~~ 48 (326)
.|.-=-.-.|+|+.||+.|.+..
T Consensus 61 YCq~CAYkkGiCamCGKki~dtk 83 (90)
T PF10235_consen 61 YCQTCAYKKGICAMCGKKILDTK 83 (90)
T ss_pred cChhhhcccCcccccCCeecccc
Confidence 34333445899999999996543
No 232
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=32.87 E-value=23 Score=21.23 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=10.2
Q ss_pred CCCccccc-ccccccccccc
Q 040058 26 SCAHTTVR-DSRCIFCSQAM 44 (326)
Q Consensus 26 ~C~H~~~~-~~~C~~Cg~~~ 44 (326)
.|.+.+.. ...|..||+.|
T Consensus 7 ~Cg~~~~~~~~fC~~CG~~L 26 (26)
T PF13248_consen 7 NCGAEIDPDAKFCPNCGAKL 26 (26)
T ss_pred ccCCcCCcccccChhhCCCC
Confidence 45554333 44677777654
No 233
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=31.85 E-value=28 Score=30.19 Aligned_cols=14 Identities=14% Similarity=0.249 Sum_probs=12.2
Q ss_pred EEEEeCCCceeeec
Q 040058 70 QLVLNLDHTLLHCR 83 (326)
Q Consensus 70 ~LVLDLD~TLIhs~ 83 (326)
++++|.||||....
T Consensus 3 ~i~fDktGTLt~~~ 16 (215)
T PF00702_consen 3 AICFDKTGTLTQGK 16 (215)
T ss_dssp EEEEECCTTTBESH
T ss_pred EEEEecCCCcccCe
Confidence 68999999997765
No 234
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=31.36 E-value=87 Score=32.00 Aligned_cols=49 Identities=24% Similarity=0.320 Sum_probs=38.5
Q ss_pred eEEEEeCccHHHHHHHhhcCc-eEEEEcCCcHHHHHHHHHH-hCC-------CCcccc
Q 040058 112 DKLVKLRPFVRTFLEQASSLV-DIYLCTMSTRCYAEAAVKL-LDL-------DSKYFS 160 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~y-El~IyT~g~~~YA~~v~~~-LDP-------~~~~F~ 160 (326)
..||.+-|.+..+|+.+.+.= .+.+-|++.-.|++.+++. +++ ...||.
T Consensus 179 ~kYi~k~~~l~~~L~~lr~~GKklFLiTNS~~~yt~~~M~yl~g~~~~~~~dW~dlFD 236 (448)
T PF05761_consen 179 EKYIHKDPKLPPWLERLRSAGKKLFLITNSPFDYTNAVMSYLLGPFLGEDPDWRDLFD 236 (448)
T ss_dssp CCCEE--CHHHHHHHHHHCCT-EEEEE-SS-HHHHHHHHHHHCGCCSSTTT-GGGCEC
T ss_pred HHHccCCchHHHHHHHHHhcCceEEEecCCCCchhhhhhhhccCCCCCCCCChhhhee
Confidence 667777999999999998874 8999999999999999985 666 566886
No 235
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=29.74 E-value=23 Score=33.42 Aligned_cols=14 Identities=29% Similarity=0.339 Sum_probs=11.3
Q ss_pred eEEEEeCCCceeee
Q 040058 69 LQLVLNLDHTLLHC 82 (326)
Q Consensus 69 l~LVLDLD~TLIhs 82 (326)
-+.|.|||||||=-
T Consensus 3 ~VfvWDlDETlIif 16 (274)
T TIGR01658 3 NVYVWDMDETLILL 16 (274)
T ss_pred eeEEEeccchHHHH
Confidence 36799999999844
No 236
>KOG4549 consensus Magnesium-dependent phosphatase [General function prediction only]
Probab=29.49 E-value=2.8e+02 Score=23.73 Aligned_cols=78 Identities=14% Similarity=0.094 Sum_probs=49.9
Q ss_pred CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-cHHH
Q 040058 67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS-TRCY 144 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g-~~~Y 144 (326)
+.-+.++|||-||+-.-.+..+...-+-+..+.. .-+.-...=|-.+.-|..+++. -++.+.+.+ ..+|
T Consensus 4 ~p~~~~fdldytiwP~~vdthl~~pfkP~k~~~g---------~~g~e~~fY~Di~rIL~dLk~~GVtl~~ASRt~ap~i 74 (144)
T KOG4549|consen 4 KPEAMQFDLDYTIWPRLVDTHLDYPFKPFKCECG---------SKGEEMIFYDDIRRILVDLKKLGVTLIHASRTMAPQI 74 (144)
T ss_pred CCceeEEeccceeeeEEEEecccccccccccCcc---------cCcceeeeccchhHHHHHHHhcCcEEEEecCCCCHHH
Confidence 4557889999998766554433211000000000 0144456778889999999987 788777665 6799
Q ss_pred HHHHHHHhC
Q 040058 145 AEAAVKLLD 153 (326)
Q Consensus 145 A~~v~~~LD 153 (326)
|.+.++.+-
T Consensus 75 A~q~L~~fk 83 (144)
T KOG4549|consen 75 ASQGLETFK 83 (144)
T ss_pred HHHHHHHhc
Confidence 999999875
No 237
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=29.15 E-value=42 Score=32.86 Aligned_cols=40 Identities=18% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEeCc-cHHHHHHHhhc------CceEEEEcCCcHHHHHHHHHHh
Q 040058 113 KLVKLRP-FVRTFLEQASS------LVDIYLCTMSTRCYAEAAVKLL 152 (326)
Q Consensus 113 ~~vklRP-gl~eFL~~ls~------~yEl~IyT~g~~~YA~~v~~~L 152 (326)
+.+.-|| ++++-|+.+.+ .++|+|+-.|.+.-+..+++..
T Consensus 6 v~ayNRp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~ 52 (334)
T cd02514 6 VIACNRPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF 52 (334)
T ss_pred EEecCCHHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh
Confidence 4567899 69999998875 4899999999887666666554
No 238
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.03 E-value=24 Score=30.13 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=26.1
Q ss_pred chhhhhcccccccccccccCCCCCccccc--ccccccccccccccc
Q 040058 5 SCKECVGKTKFVIKRKCEQSLSCAHTTVR--DSRCIFCSQAMNDSF 48 (326)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~C~H~~~~--~~~C~~Cg~~~~~~~ 48 (326)
.|..|. ||||+ ..|.|--.+ -..||+||-.++-.+
T Consensus 67 tC~IC~-KTKFA--------DG~GH~C~YCq~r~CARCGGrv~lrs 103 (169)
T KOG3799|consen 67 TCGICH-KTKFA--------DGCGHNCSYCQTRFCARCGGRVSLRS 103 (169)
T ss_pred chhhhh-hcccc--------cccCcccchhhhhHHHhcCCeeeecc
Confidence 577774 88886 578887766 558999998886553
No 239
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=28.44 E-value=30 Score=35.79 Aligned_cols=36 Identities=28% Similarity=0.284 Sum_probs=25.1
Q ss_pred eCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHH-hCCC
Q 040058 117 LRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKL-LDLD 155 (326)
Q Consensus 117 lRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~-LDP~ 155 (326)
+||...+-+++. . +.+|-|++.+.|++++++. ++-+
T Consensus 111 l~~~a~~~~~~~--g-~~vvVSASp~~~Vepfa~~~LGid 147 (497)
T PLN02177 111 VHPETWRVFNSF--G-KRYIITASPRIMVEPFVKTFLGAD 147 (497)
T ss_pred cCHHHHHHHHhC--C-CEEEEECCcHHHHHHHHHHcCCCC
Confidence 566655544432 2 3499999999999999975 5433
No 240
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=28.21 E-value=25 Score=22.44 Aligned_cols=11 Identities=36% Similarity=0.942 Sum_probs=6.2
Q ss_pred cchhhhhcccc
Q 040058 4 YSCKECVGKTK 14 (326)
Q Consensus 4 ~~~~~~~~~~~ 14 (326)
|.|.+|.+...
T Consensus 1 Y~C~~Cg~~~~ 11 (32)
T PF03604_consen 1 YICGECGAEVE 11 (32)
T ss_dssp EBESSSSSSE-
T ss_pred CCCCcCCCeeE
Confidence 55666666555
No 241
>PRK10671 copA copper exporting ATPase; Provisional
Probab=27.85 E-value=78 Score=34.69 Aligned_cols=76 Identities=14% Similarity=0.135 Sum_probs=53.8
Q ss_pred EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCC
Q 040058 115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDT 193 (326)
Q Consensus 115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~ 193 (326)
-.+||++.+.|+.+.+. +.+.+.|...+..|+.+++.++-+ .+|.+ +. .++ -.+-++.+......+++|-|.
T Consensus 649 d~~r~~a~~~i~~L~~~gi~v~~~Tgd~~~~a~~ia~~lgi~-~~~~~-~~-p~~----K~~~i~~l~~~~~~v~~vGDg 721 (834)
T PRK10671 649 DPLRSDSVAALQRLHKAGYRLVMLTGDNPTTANAIAKEAGID-EVIAG-VL-PDG----KAEAIKRLQSQGRQVAMVGDG 721 (834)
T ss_pred CcchhhHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCC-EEEeC-CC-HHH----HHHHHHHHhhcCCEEEEEeCC
Confidence 36899999999999765 999999999999999999998876 34442 22 111 011222233445679999998
Q ss_pred chhh
Q 040058 194 ESVW 197 (326)
Q Consensus 194 ~~vw 197 (326)
..=.
T Consensus 722 ~nD~ 725 (834)
T PRK10671 722 INDA 725 (834)
T ss_pred HHHH
Confidence 7533
No 242
>KOG2043 consensus Signaling protein SWIFT and related BRCT domain proteins [Transcription; Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=27.72 E-value=36 Score=37.71 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=26.7
Q ss_pred hhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058 296 LVQEKKFLVHPRWIDAYYFLWRRRPEDDYL 325 (326)
Q Consensus 296 a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~ 325 (326)
|..-|+.||+|.||..|...=...||+.|.
T Consensus 708 ai~~G~~ivT~~wL~s~~k~g~~~dek~yi 737 (896)
T KOG2043|consen 708 AISSGKPLVTPQWLVSSLKSGEKLDEKPYI 737 (896)
T ss_pred hhccCCcccchHHHHHHhhccccccCcccc
Confidence 555799999999999999999999999884
No 243
>COG4030 Uncharacterized protein conserved in archaea [Function unknown]
Probab=26.60 E-value=82 Score=29.65 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=36.9
Q ss_pred EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhC
Q 040058 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLD 153 (326)
Q Consensus 114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LD 153 (326)
-.++-||+++-++.+.+...-+|-+.+-+.|+..+++.|.
T Consensus 81 sa~lvPgA~etm~~l~~~~tp~v~STSY~qy~~r~a~~ig 120 (315)
T COG4030 81 SAKLVPGAEETMATLQERWTPVVISTSYTQYLRRTASMIG 120 (315)
T ss_pred hcccCCChHHHHHHHhccCCceEEeccHHHHHHHHHHhcC
Confidence 3589999999999999999999999999999999999986
No 244
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.27 E-value=43 Score=32.50 Aligned_cols=46 Identities=20% Similarity=0.408 Sum_probs=29.9
Q ss_pred CCccchhhhhcccccccccc-cccCCCCCccc--------c--cccccccccccccccc
Q 040058 1 MGAYSCKECVGKTKFVIKRK-CEQSLSCAHTT--------V--RDSRCIFCSQAMNDSF 48 (326)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~-~~~~~~C~H~~--------~--~~~~C~~Cg~~~~~~~ 48 (326)
|.-|.|+-|-.. +..-+.. ...+ +|.|.+ . -.+.|..|++.++...
T Consensus 1 md~~~CP~Ck~~-~y~np~~kl~i~-~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 1 MDDQGCPRCKTT-KYRNPSLKLMVN-VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCCCcCCCC-CccCcccccccC-CCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 778999999653 2222332 2333 788864 1 1457999999998875
No 245
>cd01615 CIDE_N CIDE_N domain, found at the N-terminus of the CIDE (cell death-inducing DFF45-like effector) proteins, as well as CAD nuclease (caspase-activated DNase/DNA fragmentation factor, DFF40) and its inhibitor, ICAD(DFF45). These proteins are associated with the chromatin condensation and DNA fragmentation events of apoptosis; the CIDE_N domain is thought to regulate the activity of ICAD/DFF45, and the CAD/DFF40 and CIDE nucleases during apoptosis. The CIDE-N domain is also found in the FSP27/CIDE-C protein.
Probab=25.04 E-value=84 Score=24.28 Aligned_cols=18 Identities=28% Similarity=0.237 Sum_probs=15.6
Q ss_pred cCceEEEEeCCCceeeec
Q 040058 66 ERKLQLVLNLDHTLLHCR 83 (326)
Q Consensus 66 ~~Kl~LVLDLD~TLIhs~ 83 (326)
....+|||+-|||.|.+.
T Consensus 38 ~~~~~lvL~eDGTeVddE 55 (78)
T cd01615 38 SAPVTLVLEEDGTEVDDE 55 (78)
T ss_pred CCCeEEEEeCCCcEEccH
Confidence 467899999999999775
No 246
>PF02017 CIDE-N: CIDE-N domain; InterPro: IPR003508 This domain consists of caspase-activated (CAD) nucleases, which induce DNA fragmentation and chromatin condensation during apoptosis, and the cell death activator proteins CIDE-A and CIDE-B, which are inhibitors of CAD nuclease. The two proteins interact through the region defined by the method signatures.; GO: 0006915 apoptosis, 0005622 intracellular; PDB: 1IBX_A 2EEL_A 1F2R_I 1C9F_A 1D4B_A.
Probab=23.94 E-value=83 Score=24.30 Aligned_cols=17 Identities=29% Similarity=0.296 Sum_probs=15.0
Q ss_pred CceEEEEeCCCceeeec
Q 040058 67 RKLQLVLNLDHTLLHCR 83 (326)
Q Consensus 67 ~Kl~LVLDLD~TLIhs~ 83 (326)
...+|||+-|||.|...
T Consensus 39 ~~~~lvL~eDGT~VddE 55 (78)
T PF02017_consen 39 EPVRLVLEEDGTEVDDE 55 (78)
T ss_dssp STCEEEETTTTCBESSC
T ss_pred cCcEEEEeCCCcEEccH
Confidence 67889999999999865
No 247
>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional
Probab=23.24 E-value=1.1e+02 Score=33.30 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=52.5
Q ss_pred eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEE
Q 040058 112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVIL 190 (326)
Q Consensus 112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIv 190 (326)
.+.-.+||++.+.++++.+. +++++.|...+..|..+++.++-+ .++. +. .+ .....++.|+ . ...|++|
T Consensus 564 ~l~d~~r~~a~~~i~~L~~~gi~~~llTGd~~~~a~~ia~~lgi~-~~~~--~~-p~-~K~~~v~~l~---~-~~~v~mv 634 (741)
T PRK11033 564 ALQDTLRADARQAISELKALGIKGVMLTGDNPRAAAAIAGELGID-FRAG--LL-PE-DKVKAVTELN---Q-HAPLAMV 634 (741)
T ss_pred EEecCCchhHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHcCCC-eecC--CC-HH-HHHHHHHHHh---c-CCCEEEE
Confidence 55568999999999999876 999999999999999999999976 2221 11 11 0112334443 2 2468888
Q ss_pred eCCc
Q 040058 191 DDTE 194 (326)
Q Consensus 191 DD~~ 194 (326)
-|..
T Consensus 635 GDgi 638 (741)
T PRK11033 635 GDGI 638 (741)
T ss_pred ECCH
Confidence 8775
No 248
>PRK09194 prolyl-tRNA synthetase; Provisional
Probab=21.91 E-value=2.7e+02 Score=29.06 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=35.7
Q ss_pred ceEEEEcCC-----cHHHHHHHHHHhCCCCccccceEE--eecCCCCCccccCCCCCCCCCcEEEEeCCc
Q 040058 132 VDIYLCTMS-----TRCYAEAAVKLLDLDSKYFSSRII--AREDFNGKDRKNPDLVRGQERGIVILDDTE 194 (326)
Q Consensus 132 yEl~IyT~g-----~~~YA~~v~~~LDP~~~~F~~Ri~--sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~ 194 (326)
|+++|...+ ..+||.++.+.|--.|- |+. -|+...+.-.|+-+++|.+ -+|+|+.+.
T Consensus 469 ~~v~Iv~~~~~~~~~~~~a~~i~~~L~~~gi----~v~~Ddr~~~~g~k~~~ad~~GiP--~~iiiG~~e 532 (565)
T PRK09194 469 FDVHIVPVNMKDEEVKELAEKLYAELQAAGI----EVLLDDRKERPGVKFADADLIGIP--HRIVVGDRG 532 (565)
T ss_pred ceEEEEECCCCcHHHHHHHHHHHHHHhccCC----eEEEECCCCCHHHHHHHHHhcCCC--EEEEEcCcc
Confidence 788888776 45789999999866542 333 2333333345666665544 477888654
No 249
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=21.35 E-value=92 Score=24.62 Aligned_cols=35 Identities=17% Similarity=0.297 Sum_probs=28.1
Q ss_pred eCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHh
Q 040058 117 LRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLL 152 (326)
Q Consensus 117 lRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~L 152 (326)
.|-.+++.|+.|..-.++++||.+. +|.+.+.+.+
T Consensus 6 ~~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll 40 (94)
T cd02974 6 LKQQLKAYLERLENPVELVASLDDS-EKSAELLELL 40 (94)
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHH
Confidence 4567888888898999999999976 7777766665
No 250
>KOG0966 consensus ATP-dependent DNA ligase IV [Replication, recombination and repair]
Probab=21.17 E-value=67 Score=35.06 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=19.2
Q ss_pred HHhhhCCceEEchHHHHHHHHHh
Q 040058 294 KFLVQEKKFLVHPRWIDAYYFLW 316 (326)
Q Consensus 294 ~~a~~~~~~vV~p~Wl~~~~~~w 316 (326)
+.|.++++-||+|+||.+|+..=
T Consensus 689 ~~~~~~~cdVl~p~Wlldcc~~~ 711 (881)
T KOG0966|consen 689 AQAIKRSCDVLKPAWLLDCCKKQ 711 (881)
T ss_pred HHHHhccCceeeHHHHHHHHhhh
Confidence 46777899999999999988653
No 251
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=20.38 E-value=40 Score=33.89 Aligned_cols=30 Identities=33% Similarity=0.609 Sum_probs=22.3
Q ss_pred chhhhhcccccccccccccCCCCCccccccccccccccccc
Q 040058 5 SCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMN 45 (326)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~C~H~~~~~~~C~~Cg~~~~ 45 (326)
-||.|..+-|+| .+|+|.|- ||+.|-..-.
T Consensus 371 LCKICaendKdv------kIEPCGHL-----lCt~CLa~WQ 400 (563)
T KOG1785|consen 371 LCKICAENDKDV------KIEPCGHL-----LCTSCLAAWQ 400 (563)
T ss_pred HHHHhhccCCCc------ccccccch-----HHHHHHHhhc
Confidence 499999999986 57899985 5666655443
No 252
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=20.11 E-value=61 Score=33.53 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=19.5
Q ss_pred eEEEEcCCcHHHHHHHHHH-hCCC
Q 040058 133 DIYLCTMSTRCYAEAAVKL-LDLD 155 (326)
Q Consensus 133 El~IyT~g~~~YA~~v~~~-LDP~ 155 (326)
+.+|-|+..+.++++-++. +.-+
T Consensus 110 ~~vVVTAsPrvmVEpFake~LG~D 133 (498)
T PLN02499 110 KRVVVTRMPRVMVERFAKEHLRAD 133 (498)
T ss_pred eEEEEeCCHHHHHHHHHHHhcCCc
Confidence 8999999999999998886 6544
Done!