BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040062
(689 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 104/384 (27%), Positives = 157/384 (40%), Gaps = 72/384 (18%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
++ + P A+ D V++WN +LL TL H SV V ++
Sbjct: 60 VWGVAFSPDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVRGVAFS 107
Query: 76 KHGRYIASGSDDQVILIHEKK-------PGSGTTEFGSGEPPDIE--------------- 113
G+ IAS SDD+ + + + G ++ +G PD +
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN 167
Query: 114 -NWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172
N ++ TL GH++ V + +SPD +AS S D T+ +WN + G L GHSS V+G
Sbjct: 168 RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRG 226
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG---------- 222
VA+ P G IAS SDDKTV +W + L GH + S+ FR G
Sbjct: 227 VAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGH-SSSVNGVAFRPDGQTIASASDDK 284
Query: 223 ----WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNS 278
W+ G + T G HS+ V W F G ++ RN
Sbjct: 285 TVKLWNRNGQLLQTLTG-----HSSSV-----WGVAFSPDGQTIASASDDKTVKLWNRNG 334
Query: 279 ASSQEVKAAPVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFT 337
Q + T +S + G P IA S D+T+ +W + H +
Sbjct: 335 QHLQTL-------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--S 385
Query: 338 QSVVDLSWSPDGYSLFACSLDGTV 361
SV +++SPDG ++ + S D TV
Sbjct: 386 SSVRGVAFSPDGQTIASASDDKTV 409
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 101/353 (28%), Positives = 147/353 (41%), Gaps = 65/353 (18%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA 82
P A+ D V++WN +LL TL H SV V ++ G+ IA
Sbjct: 26 PDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142
S SDD+ + + + N ++ TL GH++ V + +SPD +AS
Sbjct: 74 SASDDKTVKLWNR------------------NGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR------- 195
S D T+ +WN + G L GHSS V GVA+ P G IAS SDDKTV +W
Sbjct: 116 ASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 174
Query: 196 ------TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249
+S W +A DG S +L W+ G + T G HS+ V RG
Sbjct: 175 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNGQLLQTLTG-----HSSSV--RG 226
Query: 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY-NV 308
F G ++ RN Q + T +S + G +P
Sbjct: 227 ---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-------TGHSSSVNGVAFRPDGQT 276
Query: 309 IAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTV 361
IA S D+T+ +W + H + SV +++SPDG ++ + S D TV
Sbjct: 277 IASASDDKTVKLWNRNGQLLQTLTGH--SSSVWGVAFSPDGQTIASASDDKTV 327
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 105/376 (27%), Positives = 153/376 (40%), Gaps = 70/376 (18%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA 82
P A+ D V++WN +LL TL H SVN V + G+ IA
Sbjct: 231 PDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVNGVAFRPDGQTIA 278
Query: 83 SGSDDQVILIHEKK-------PGSGTTEFGSGEPPDIE----------------NWKVAM 119
S SDD+ + + + G ++ +G PD + N +
Sbjct: 279 SASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ 338
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TL GH++ V + +SPD +AS S D T+ +WN + G L GHSS V+GVA+ P G
Sbjct: 339 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDG 397
Query: 180 SFIASQSDDKTVIIWR-------------TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226
IAS SDDKTV +W +S W +A D S +L W+
Sbjct: 398 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKL-WNRN 456
Query: 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286
G + T G HS+ V RG F G ++ RN Q +
Sbjct: 457 GQLLQTLTG-----HSSSV--RG---VAFSPDGQTIASASDDKTVKLWNRNGQLLQTL-- 504
Query: 287 APVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345
T +S + G P IA S D+T+ +W + H + SV +++
Sbjct: 505 -----TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--SSSVWGVAF 557
Query: 346 SPDGYSLFACSLDGTV 361
SPDG ++ + S D TV
Sbjct: 558 SPDGQTIASASSDKTV 573
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 132/314 (42%), Gaps = 53/314 (16%)
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H SV V ++ G+ IAS SDD+ + + + N ++ TL
Sbjct: 12 LEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR------------------NGQLLQTL 53
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GH++ V + +SPD +AS S D T+ +WN + G L GHSS V+GVA+ P G
Sbjct: 54 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQT 112
Query: 182 IASQSDDKTVIIWR-------------TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH 228
IAS SDDKTV +W +S W +A DG S +L W+ G
Sbjct: 113 IASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKL-WNRNGQ 171
Query: 229 FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288
+ T G HS+ V W F G ++ RN Q +
Sbjct: 172 LLQTLTG-----HSSSV-----WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---- 217
Query: 289 VGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP 347
T +S + G P IA S D+T+ +W + H + SV +++ P
Sbjct: 218 ---TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGH--SSSVNGVAFRP 272
Query: 348 DGYSLFACSLDGTV 361
DG ++ + S D TV
Sbjct: 273 DGQTIASASDDKTV 286
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
++ + P A+ D V++WN +LL TL H SV V ++
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVRGVAFS 476
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135
G+ IAS SDD+ + + + N ++ TL GH++ V + +SP
Sbjct: 477 PDGQTIASASDDKTVKLWNR------------------NGQLLQTLTGHSSSVRGVAFSP 518
Query: 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
D +AS S D T+ +WN + G L GHSS V GVA+ P G IAS S DKTV +W
Sbjct: 519 DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW 576
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 30/131 (22%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA 82
P A+ D V++WN +LL TL H SV V ++ G+ IA
Sbjct: 477 PDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSSSVRGVAFSPDGQTIA 524
Query: 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142
S SDD+ + + + N ++ TL GH++ V + +SPD +AS
Sbjct: 525 SASDDKTVKLWNR------------------NGQLLQTLTGHSSSVWGVAFSPDGQTIAS 566
Query: 143 GSLDNTIHIWN 153
S D T+ +WN
Sbjct: 567 ASSDKTVKLWN 577
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 76.6 bits (187), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 58/223 (26%), Positives = 89/223 (39%), Gaps = 52/223 (23%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWN-------MKSVGKN--------------- 48
H + + + P A+ GGD ++RIW KSV
Sbjct: 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCG 73
Query: 49 --------------FENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94
++ ++ + TL H V V WA G +A+ S D+ + + E
Sbjct: 74 NYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Query: 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNM 154
+ + ++ L HT DV + W P +LAS S D+T+ ++
Sbjct: 134 VD--------------EEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYRE 179
Query: 155 STG--ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195
+C A L GH S V +A+DP G +AS SDD+TV IWR
Sbjct: 180 EEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWR 222
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIW--NMSTGICTAVLRGHSSLVKGVAWDPIG 179
GH V + WSP + LAS S D T IW N C L GH + VK VAW P G
Sbjct: 58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG 117
Query: 180 SFIASQSDDKTVIIWRTSD 198
+ +A+ S DK+V +W +
Sbjct: 118 NLLATCSRDKSVWVWEVDE 136
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 47 KNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI-HEKKPGSGTTEFG 105
K + +E ATL H +V + + G+ +AS SDD+ + I + PG+
Sbjct: 175 KLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVAC 234
Query: 106 SGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSILASGSLDNTIHIW--------NMST 156
SG P +WK TL G H+ + D+ W LA+ D+ I ++ T
Sbjct: 235 SGSDP---SWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT 291
Query: 157 GICTAVL-RGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWR 195
TA L + HS V VAW+P +AS SDD V W+
Sbjct: 292 FSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 48/201 (23%)
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT---DGHWAKSLGSTFFRRLGWSPCGHF 229
+AW+P G+ +AS D+ + IW T S ++ +GH R++ WSPCG++
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGH------QRTVRKVAWSPCGNY 75
Query: 230 ITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRR-NSASSQEVKAAP 288
+ + A+FD A + K N F + E +
Sbjct: 76 LAS--------------------ASFD-----ATTCIWKKNQDDFECVTTLEGHENEVKS 110
Query: 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT--ASPRPLFVAKHFFTQSVVDLSWS 346
V W N++A S+D+++ VW + TQ V + W
Sbjct: 111 VAWAPSG-----------NLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWH 159
Query: 347 PDGYSLFACSLDGTVANFHFE 367
P L + S D TV + E
Sbjct: 160 PSQELLASASYDDTVKLYREE 180
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKN----FENDESTQRLLATLRD-HFGSVN 70
++S+ P R A+ D VRIW G + + + + TL H ++
Sbjct: 197 VWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIY 256
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ W + +A+ D I + ++ P S +P A + H+ DV
Sbjct: 257 DIAWCQLTGALATACGDDAIRVFQEDPNS--------DPQQPTFSLTAHLHQAHSQDVNC 308
Query: 131 LNWSPDD-SILASGSLDNTIHIWNM 154
+ W+P + +LAS S D + W
Sbjct: 309 VAWNPKEPGLLASCSDDGEVAFWKY 333
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 43 KSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102
+ +G+ E + L TL H +V+ V+++ +G ++AS S D++I I G
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---- 58
Query: 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162
K T+ GH + D+ WS D ++L S S D T+ IW++S+G C
Sbjct: 59 -------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
L+GHS+ V ++P + I S S D++V IW
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 79
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 80 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 48/109 (44%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G + G G N+ + TL GHT V + +SP+ LAS S D I IW G
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 204
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 265 YIWNLQTKEIVQKLQGH 281
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D ++IW D S+ + L TL+ H V C + I SGS D+ + I
Sbjct: 89 DKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWN 153
+ K G K TL H+ V ++++ D S++ S S D IW+
Sbjct: 138 DVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 154 MSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
++G C L + V V + P G +I + + D T+ +W S GH
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 39 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 81
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 82 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 142 QSNLIVSGSFDESVRIW 158
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 50 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWS 98
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 99 SDSNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNP 141
Query: 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW
Sbjct: 142 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 201
Query: 196 TS 197
T+
Sbjct: 202 TA 203
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
P S T+ S P N+ + TL GHT V + +SP+ LAS S D I IW
Sbjct: 21 PSSSATQ--SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 78
Query: 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
G + GH + VAW + + S SDDKT+ IW S GH
Sbjct: 79 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 130
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 182
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 183 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 225
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 226 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 285
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 286 YIWNLQTKEIVQKLQGH 302
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 104 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 152
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 153 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 195
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 196 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Query: 207 GH 208
GH
Sbjct: 256 GH 257
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 37 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 79
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 80 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 140 QSNLIVSGSFDESVRIW 156
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 79/182 (43%), Gaps = 28/182 (15%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 48 VSSVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWS 96
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 97 SDSNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNP 139
Query: 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW
Sbjct: 140 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 199
Query: 196 TS 197
T+
Sbjct: 200 TA 201
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 2/112 (1%)
Query: 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
P S T+ S P N+ + TL GHT V + +SP+ LAS S D I IW
Sbjct: 19 PSSSATQ--SKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYD 76
Query: 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
G + GH + VAW + + S SDDKT+ IW S GH
Sbjct: 77 GKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 128
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 180
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 181 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 223
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI---GSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 224 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 283
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 284 YIWNLQTKEIVQKLQGH 300
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 102 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 150
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 151 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 193
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 194 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Query: 207 GH 208
GH
Sbjct: 254 GH 255
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 43 KSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102
+ +G+ E + L TL H +V+ V+++ +G ++AS S D++I I G
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG---- 58
Query: 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162
K T+ GH + D+ WS D ++L S S D T+ IW++S+G C
Sbjct: 59 -------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
L+GHS+ V ++P + I S S D++V IW
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 79
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 80 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 48/109 (44%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G + G G N+ + TL GHT V + +SP+ LAS S D I IW G
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 60
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 204
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 265 YIWNLQTKEIVQKLQGH 281
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D ++IW D S+ + L TL+ H V C + I SGS D+ + I
Sbjct: 89 DKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWN 153
+ K G K TL H+ V ++++ D S++ S S D IW+
Sbjct: 138 DVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 154 MSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
++G C L + V V + P G +I + + D T+ +W S GH
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 32 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 74
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 75 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 134
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 135 QSNLIVSGSFDESVRIW 151
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 45 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 93
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 94 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 136
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 137 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 196
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 84
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 85 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 123
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 175
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 176 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 218
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 219 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 278
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 279 YIWNLQTKEIVQKLQGH 295
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 97 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 145
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 146 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 188
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 189 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Query: 207 GH 208
GH
Sbjct: 249 GH 250
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 63
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 124 QSNLIVSGSFDESVRIW 140
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 82
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 83 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G++ S P N+ + TL GHT V + +SP+ LAS S D I IW G
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 164
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 207
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 268 YIWNLQTKEIVQKLQGH 284
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 86 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 135 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 207 GH 208
GH
Sbjct: 238 GH 239
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 20 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 62
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 63 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 122
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 123 QSNLIVSGSFDESVRIW 139
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 33 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 81
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 82 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 124
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 125 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 184
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 72
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 73 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 111
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 163
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 164 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 206
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 207 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 266
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 267 YIWNLQTKEIVQKLQGH 283
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 85 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 133
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 134 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 176
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 177 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Query: 207 GH 208
GH
Sbjct: 237 GH 238
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 63
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 124 QSNLIVSGSFDESVRIW 140
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 82
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 83 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 49/109 (44%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G++ S P N+ + TL GHT V + +SP+ LAS S D I IW G
Sbjct: 4 GSSATQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 164
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 207
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 268 YIWNLQTKEIVQKLQGH 284
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 86 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 135 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 207 GH 208
GH
Sbjct: 238 GH 239
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 21 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 63
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 123
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 124 QSNLIVSGSFDESVRIW 140
Score = 69.3 bits (168), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 34 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 82
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 83 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 126 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 185
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 50/109 (45%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G+ EF S P N+ + TL GHT V + +SP+ LAS S D I IW G
Sbjct: 4 GSPEFQSKPTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF 63
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 64 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 112
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 164
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 165 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 207
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 208 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 267
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 268 YIWNLQTKEIVQKLQGH 284
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 86 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 134
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 135 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 177
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 178 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Query: 207 GH 208
GH
Sbjct: 238 GH 239
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 72.4 bits (176), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 57
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 118 QSNLIVSGSFDESVRIW 134
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 28 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 76
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 77 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 158
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 201
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 262 YIWNLQTKEIVQKLQGH 278
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 80 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 129 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 207 GH 208
GH
Sbjct: 232 GH 233
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 15 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 57
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 117
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 118 QSNLIVSGSFDESVRIW 134
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 28 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 76
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 77 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 119
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 120 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 179
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 67
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 106
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 158
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 159 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 201
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 202 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 261
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 262 YIWNLQTKEIVQKLQGH 278
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 80 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 128
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 129 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 171
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 172 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Query: 207 GH 208
GH
Sbjct: 232 GH 233
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 16 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 58
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 59 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 118
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 119 QSNLIVSGSFDESVRIW 135
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 29 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 77
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 78 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 120
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 121 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 180
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 68
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 69 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 107
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 159
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 160 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 202
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI---GSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 203 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 262
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 263 YIWNLQTKEIVQKLQGH 279
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 81 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 129
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 130 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 172
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 173 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Query: 207 GH 208
GH
Sbjct: 233 GH 234
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 11 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 53
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 54 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 113
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 114 QSNLIVSGSFDESVRIW 130
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 24 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 72
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 73 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 116 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 175
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 63
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 64 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 102
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 154
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 155 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 197
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI---GSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 198 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 257
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 258 YIWNLQTKEIVQKLQGH 274
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 76 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 124
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 125 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 167
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 168 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Query: 207 GH 208
GH
Sbjct: 228 GH 229
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 17/137 (12%)
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
L TL H +V+ V+++ +G ++AS S D++I I G K
Sbjct: 14 LKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KF 56
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
T+ GH + D+ WS D ++L S S D T+ IW++S+G C L+GHS+ V ++P
Sbjct: 57 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP 116
Query: 178 IGSFIASQSDDKTVIIW 194
+ I S S D++V IW
Sbjct: 117 QSNLIVSGSFDESVRIW 133
Score = 68.9 bits (167), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 78/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 27 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 75
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 76 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 118
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 119 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 178
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 46/102 (45%)
Query: 107 GEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166
G P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 4 GSTPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 64 KLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 105
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 157
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 158 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 200
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 201 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 260
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 261 YIWNLQTKEIVQKLQGH 277
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 72/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 79 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 127
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G K TL H+ V ++++ D S++ S S D
Sbjct: 128 ESVRIWDVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 170
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 171 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Query: 207 GH 208
GH
Sbjct: 231 GH 232
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 17/152 (11%)
Query: 43 KSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102
+ +G+ E + L TL H +V+ V+++ +G ++A+ S D++I I G
Sbjct: 3 QQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG---- 58
Query: 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162
K T+ GH + D+ WS D ++L S S D T+ IW++S+G C
Sbjct: 59 -------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT 105
Query: 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
L+GHS+ V ++P + I S S D++V IW
Sbjct: 106 LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 77/180 (42%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A D ++IW GK FE T+ H ++ V W+
Sbjct: 31 SVKFSPNGEWLAASSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 79
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 80 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG C L HS V V ++ GS I S S D IW T+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 36/109 (33%), Positives = 48/109 (44%)
Query: 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159
G + G G N+ + TL GHT V + +SP+ LA+ S D I IW G
Sbjct: 1 GGQQMGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKF 60
Query: 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ GH + VAW + + S SDDKT+ IW S GH
Sbjct: 61 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 77/197 (39%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T + L TL H V+ V +
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGKCLKTLPAHSDPVSAVHFN 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 204
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD---PIGSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLV 264
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 265 YIWNLQTKEIVQKLQGH 281
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 71/176 (40%), Gaps = 29/176 (16%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D ++IW D S+ + L TL+ H V C + I SGS D+ + I
Sbjct: 89 DKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIW 137
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWN 153
+ K G K TL H+ V ++++ D S++ S S D IW+
Sbjct: 138 DVKTG-----------------KCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 154 MSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
++G C L + V V + P G +I + + D T+ +W S GH
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 79
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 80 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG+C L HS V V ++ GS I S S D IW T+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 76/197 (38%), Gaps = 32/197 (16%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T L TL H V+ V +
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGMCLKTLPAHSDPVSAVHFN 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ G I S S D + I + G T PP V + +S
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-----------------VSFVKFS 204
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI---GSFIASQSDDKTV 191
P+ + + +LDNT+ +W+ S G C GH + + + G +I S S+D V
Sbjct: 205 PNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMV 264
Query: 192 IIWRTSDWSLAHRTDGH 208
IW + + GH
Sbjct: 265 YIWNLQTKEIVQKLQGH 281
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 71/182 (39%), Gaps = 29/182 (15%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ D ++IW D S+ + L TL+ H V C + I SGS D
Sbjct: 83 LVSASDDKTLKIW-----------DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFD 131
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
+ + I + K G TL H+ V ++++ D S++ S S D
Sbjct: 132 ESVRIWDVKTG-----------------MCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 148 TIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206
IW+ ++G C L + V V + P G +I + + D T+ +W S
Sbjct: 175 LCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Query: 207 GH 208
GH
Sbjct: 235 GH 236
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 79/180 (43%), Gaps = 28/180 (15%)
Query: 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH 77
S+ P A+ D ++IW GK FE T+ H ++ V W+
Sbjct: 31 SVKFSPNGEWLASSSADKLIKIWGAYD-GK-FEK---------TISGHKLGISDVAWSSD 79
Query: 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+ S SDD+ + I D+ + K TL+GH+ V N++P
Sbjct: 80 SNLLVSASDDKTLKIW-----------------DVSSGKCLKTLKGHSNYVFCCNFNPQS 122
Query: 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+++ SGS D ++ IW++ TG+C L HS V V ++ GS I S S D IW T+
Sbjct: 123 NLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 45/99 (45%)
Query: 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
P N+ + TL GHT V + +SP+ LAS S D I IW G + GH
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG 70
Query: 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+ VAW + + S SDDKT+ IW S GH
Sbjct: 71 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH 109
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 86/212 (40%), Gaps = 42/212 (19%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+F + P + +G D VRIW++K T L TL H V+ V +
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVK-----------TGMCLKTLPAHSDPVSAVHFN 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGT-TEFGSGEPP--------------------DIEN 114
+ G I S S D + I + G T PP D++
Sbjct: 162 RDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 115 W-----KVAMTLRGHTAD--VVDLNWS-PDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166
W K T GH + + N+S + SGS DN ++IWN+ T L+GH
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 167 SSLVKGVAWDPIGSFIASQS--DDKTVIIWRT 196
+ +V A P + IAS + +DKT+ +W++
Sbjct: 282 TDVVISTACHPTENIIASAALENDKTIKLWKS 313
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/164 (32%), Positives = 79/164 (48%), Gaps = 27/164 (16%)
Query: 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV 128
+ V ++ G+++A+G++D++I I DIEN K+ M L+GH D+
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIW-----------------DIENRKIVMILQGHEQDI 168
Query: 129 VDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSD 187
L++ P L SGS D T+ IW++ TG C+ L V VA P G +IA+ S
Sbjct: 169 YSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSL 227
Query: 188 DKTVIIWRTSDWSLAHRTD-------GHWAKSLGSTFFRRLGWS 224
D+ V +W + L R D GH S+ S F R G S
Sbjct: 228 DRAVRVWDSETGFLVERLDSENESGTGH-KDSVYSVVFTRDGQS 270
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 34/196 (17%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
HE I+S+D P + +G GD VRIW+++ T + TL G
Sbjct: 164 HE-QDIYSLDYFPSGDKLVSGSGDRTVRIWDLR-----------TGQCSLTLSIEDGVTT 211
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
G+YIA+GS D+ + + + + G E D EN + GH V
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSETGFLV------ERLDSEN----ESGTGHKDSVYS 261
Query: 131 LNWSPDDSILASGSLDNTIHIWNM------------STGICTAVLRGHSSLVKGVAWDPI 178
+ ++ D + SGSLD ++ +WN+ ++G C GH V VA
Sbjct: 262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 321
Query: 179 GSFIASQSDDKTVIIW 194
+I S S D+ V+ W
Sbjct: 322 DEYILSGSKDRGVLFW 337
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 28 FATGGGDHKVRIWNMKSVGKN 48
FATG GD K RIW K + N
Sbjct: 373 FATGSGDCKARIWKYKKIAPN 393
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 82/204 (40%), Gaps = 58/204 (28%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+ + P + D +++W ++ T + T H V VR
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQ-----------TGYCVKTFTGHREWVRMVRPN 243
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT-----LRGHTADVVD 130
+ G IAS S+DQ + + W VA LR H V
Sbjct: 244 QDGTLIASCSNDQTVRV----------------------WVVATKECKAELREHRHVVEC 281
Query: 131 LNWSPDDS--------------------ILASGSLDNTIHIWNMSTGICTAVLRGHSSLV 170
++W+P+ S L SGS D TI +W++STG+C L GH + V
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWV 341
Query: 171 KGVAWDPIGSFIASQSDDKTVIIW 194
+GV + G FI S +DDKT+ +W
Sbjct: 342 RGVLFHSGGKFILSCADDKTLRVW 365
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 17/143 (11%)
Query: 52 DESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPD 111
D T TL+ H SV + + G+ +AS S D I + D
Sbjct: 136 DYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW-----------------D 178
Query: 112 IENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171
+ ++ T+ GH +V ++ P+ + S S D TI +W + TG C GH V+
Sbjct: 179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVR 238
Query: 172 GVAWDPIGSFIASQSDDKTVIIW 194
V + G+ IAS S+D+TV +W
Sbjct: 239 MVRPNQDGTLIASCSNDQTVRVW 261
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 55/123 (44%), Gaps = 8/123 (6%)
Query: 94 EKKPGSGTTEFGSGEP----PDIENW----KVAMTLRGHTADVVDLNWSPDDSILASGSL 145
E K EF SG P D + W L GH + V + + P S++ S S
Sbjct: 69 ESKLNEAKEEFTSGGPLGQKRDPKEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASE 128
Query: 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205
D TI +W+ TG L+GH+ V+ +++D G +AS S D T+ +W +
Sbjct: 129 DATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTM 188
Query: 206 DGH 208
GH
Sbjct: 189 HGH 191
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 29/183 (15%)
Query: 22 QPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI 81
Q G L A+ D VR+W + +T+ A LR+H V C+ WA Y
Sbjct: 244 QDGTL-IASCSNDQTVRVWVV-----------ATKECKAELREHRHVVECISWAPESSYS 291
Query: 82 ----ASGSDDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVA-----MTLRGHTADVVDL 131
A+GS+ KK G G I+ W V+ MTL GH V +
Sbjct: 292 SISEATGSE-------TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGV 344
Query: 132 NWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTV 191
+ + S + D T+ +W+ C L H V + + ++ + S D+TV
Sbjct: 345 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 404
Query: 192 IIW 194
+W
Sbjct: 405 KVW 407
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 84/206 (40%), Gaps = 50/206 (24%)
Query: 12 EGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNC 71
+ +Q S D G L A+ D +++W+ + FE + T+ H +V+
Sbjct: 151 DSVQDISFD-HSGKL-LASCSADMTIKLWDFQ----GFE-------CIRTMHGHDHNVSS 197
Query: 72 VRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDL 131
V +G +I S S D+ I + E + G T GH V +
Sbjct: 198 VSIMPNGDHIVSASRDKTIKMWEVQTGY-----------------CVKTFTGHREWVRMV 240
Query: 132 NWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-------------- 177
+ D +++AS S D T+ +W ++T C A LR H +V+ ++W P
Sbjct: 241 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE 300
Query: 178 ------IGSFIASQSDDKTVIIWRTS 197
G F+ S S DKT+ +W S
Sbjct: 301 TKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 28.9 bits (63), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 306 YNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365
++V+ S+D TI VW + K T SV D+S+ G L +CS D T+ +
Sbjct: 120 FSVMVSASEDATIKVWDYETGDFERTLKGH-TDSVQDISFDHSGKLLASCSADMTIKLWD 178
Query: 366 FE 367
F+
Sbjct: 179 FQ 180
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 61/200 (30%), Positives = 88/200 (44%), Gaps = 25/200 (12%)
Query: 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW 74
+I+S D G L ATG D K+++ ++K D+ T + H ++ V W
Sbjct: 16 KIWSFDFSQGIL--ATGSTDRKIKLVSVKY-------DDFTLIDVLDETAHKKAIRSVAW 66
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
H +A+GS D + I K+ + T F IE GH +V + WS
Sbjct: 67 RPHTSLLAAGSFDSTVSIWAKEESADRT-FEMDLLAIIE---------GHENEVKGVAWS 116
Query: 135 PDDSILASGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
D LA+ S D ++ IW C +VL+ HS VK V W P + +AS S D T
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDT 176
Query: 191 VIIWR--TSDWSLAHRTDGH 208
V IW+ DW +GH
Sbjct: 177 VRIWKDYDDDWECVAVLNGH 196
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 81/226 (35%), Gaps = 49/226 (21%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIW-NMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW 74
I S+ +P A G D V IW +S + FE D LLA + H V V W
Sbjct: 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMD-----LLAIIEGHENEVKGVAW 115
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTE-----------------------FGSGEPPD 111
+ G Y+A+ S D+ + I E E S D
Sbjct: 116 SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD 175
Query: 112 I--------ENWKVAMTLRGHTADVVDLNWSPDDSI--LASGSLDNTIHIW--------N 153
++W+ L GH V ++ + + L SGS D+T+ +W +
Sbjct: 176 TVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDD 235
Query: 154 MSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198
+C A+L H V VAW IAS D + ++ D
Sbjct: 236 QQEWVCEAILPDVHKRQVYNVAW-GFNGLIASVGADGVLAVYEEVD 280
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 50/116 (43%), Gaps = 15/116 (12%)
Query: 307 NVIAIGSQDRTITVWTTAS------PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT 360
+++A GS D T+++W L V ++WS DGY L CS D +
Sbjct: 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKS 130
Query: 361 VANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416
V + +E E G E + + DV+ + + P++ LL ++S +T
Sbjct: 131 V--WIWETDESGEEY---ECISVLQEHSQDVKHVIWH----PSEALLASSSYDDTV 177
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/188 (29%), Positives = 83/188 (44%), Gaps = 28/188 (14%)
Query: 52 DESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPD 111
D +Q L T+ H V C+ W +H ++SGS I H+ +
Sbjct: 162 DVESQTKLRTMAGHQARVGCLSWNRH--VLSSGSRSGAIHHHDVR--------------- 204
Query: 112 IENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171
I N ++ TL+GH+++V L W D LASG DN + IW+ + I H++ VK
Sbjct: 205 IANHQIG-TLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK 263
Query: 172 GVAWDPIGSFIASQ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH 228
VAW P S + + + DK + W + + + D GS L WSP
Sbjct: 264 AVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDA------GSQ-VTSLIWSPHSK 316
Query: 229 FITTTHGF 236
I +THGF
Sbjct: 317 EIMSTHGF 324
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 71/182 (39%), Gaps = 40/182 (21%)
Query: 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASG 84
L+ A+GG D+ V+IW+ +S F T +H +V V W +A+G
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKF-----------TKTNHNAAVKAVAWCPWQSNLLATG 278
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD----VVDLNWSPDDSIL 140
G I W A R +T D V L WSP +
Sbjct: 279 --------------------GGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEI 318
Query: 141 AS--GSLDNTIHIWNM-STGICTAV-LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196
S G DN + IW+ S+G+ V + H + V A P G +++ + D+ + WR
Sbjct: 319 MSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRV 378
Query: 197 SD 198
D
Sbjct: 379 YD 380
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
I + SWV + P A GG D+ I+N+K+ E R+
Sbjct: 93 IPLRSSWV-------MTCAYAPSGNYVACGGLDNICSIYNLKT-------REGNVRVSRE 138
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H G ++C R+ + + S D L DIE + T
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALW------------------DIETGQQTTTF 180
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GHT DV+ L+ +PD + SG+ D + +W++ G+C GH S + + + P G+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 182 IASQSDDKTVIIW 194
A+ SDD T ++
Sbjct: 241 FATGSDDATCRLF 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH A + ++W D +L S S D + IW+ T + SS V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 180 SFIASQSDDKTVIIW 194
+++A D I+
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G + S+ + P F +G D ++W+++ E R T H +N
Sbjct: 183 HTG-DVMSLSLAPDTRLFVSGACDASAKLWDVR---------EGMCR--QTFTGHESDIN 230
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ + +G A+GSDD + + + E + +I +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNI------------ICGITS 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+++S +L +G D ++W+ VL GH + V + G +A+ S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 191 VIIW 194
+ IW
Sbjct: 336 LKIW 339
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 74 WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+A G Y+A G D + I+ K G N +V+ L GHT + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRF 151
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
D+ I+ S S D T +W++ TG T GH+ V ++ P S + D + +
Sbjct: 152 LDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 194 WRTSDWSLAHRTDGHWAKSLGSTFF 218
W + GH + FF
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFF 235
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TLR H + + W R + S S D ++I + S TT N A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTT-----------NKVHAIP 94
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
LR ++ V+ ++P + +A G LDN I+N+ T
Sbjct: 95 LR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
I + SWV + P A GG D+ I+N+K+ E R+
Sbjct: 104 IPLRSSWV-------MTCAYAPSGNYVACGGLDNICSIYNLKT-------REGNVRVSRE 149
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H G ++C R+ + + S D L DIE + T
Sbjct: 150 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALW------------------DIETGQQTTTF 191
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GHT DV+ L+ +PD + SG+ D + +W++ G+C GH S + + + P G+
Sbjct: 192 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 251
Query: 182 IASQSDDKTVIIW 194
A+ SDD T ++
Sbjct: 252 FATGSDDATCRLF 264
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH A + ++W D +L S S D + IW+ T + SS V A+ P G
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 180 SFIASQSDDKTVIIW 194
+++A D I+
Sbjct: 121 NYVACGGLDNICSIY 135
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G + S+ + P F +G D ++W+++ E R T H +N
Sbjct: 194 HTG-DVMSLSLAPDTRLFVSGACDASAKLWDVR---------EGMCR--QTFTGHESDIN 241
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ + +G A+GSDD + + + E + +I +
Sbjct: 242 AICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNI------------ICGITS 286
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+++S +L +G D ++W+ VL GH + V + G +A+ S D
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Query: 191 VIIW 194
+ IW
Sbjct: 347 LKIW 350
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 74 WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+A G Y+A G D + I+ K G N +V+ L GHT + +
Sbjct: 116 YAPSGNYVACGGLDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRF 162
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
D+ I+ S S D T +W++ TG T GH+ V ++ P S + D + +
Sbjct: 163 LDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 221
Query: 194 WRTSDWSLAHRTDGHWAKSLGSTFF 218
W + GH + FF
Sbjct: 222 WDVREGMCRQTFTGHESDINAICFF 246
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TLR H + + W R + S S D ++I + S TT N A+
Sbjct: 61 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTT-----------NKVHAIP 105
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
LR ++ V+ ++P + +A G LDN I+N+ T
Sbjct: 106 LR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 139
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
I + SWV + P A GG D+ I+N+K+ E R+
Sbjct: 93 IPLRSSWV-------MTCAYAPSGNYVACGGLDNICSIYNLKT-------REGNVRVSRE 138
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H G ++C R+ + + S D L DIE + T
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALW------------------DIETGQQTTTF 180
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GHT DV+ L+ +PD + SG+ D + +W++ G+C GH S + + + P G+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 182 IASQSDDKTVIIW 194
A+ SDD T ++
Sbjct: 241 FATGSDDATCRLF 253
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH A + ++W D +L S S D + IW+ T + SS V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 180 SFIASQSDDKTVIIW 194
+++A D I+
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G + S+ + P F +G D ++W+++ E R T H +N
Sbjct: 183 HTG-DVMSLSLAPDTRLFVSGACDASAKLWDVR---------EGMCR--QTFTGHESDIN 230
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ + +G A+GSDD + + + E + +I +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNI------------ICGITS 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+++S +L +G D ++W+ VL GH + V + G +A+ S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 191 VIIW 194
+ IW
Sbjct: 336 LKIW 339
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 74 WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+A G Y+A G D + I+ K G N +V+ L GHT + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRF 151
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
D+ I+ S S D T +W++ TG T GH+ V ++ P S + D + +
Sbjct: 152 LDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 194 WRTSDWSLAHRTDGHWAKSLGSTFF 218
W + GH + FF
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFF 235
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TLR H + + W R + S S D ++I + S TT N A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD----SYTT-----------NKVHAIP 94
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
LR ++ V+ ++P + +A G LDN I+N+ T
Sbjct: 95 LR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
I + SWV + P A GG D+ I+N+K+ E R+
Sbjct: 93 IPLRSSWV-------MTCAYAPSGNYVACGGLDNICSIYNLKT-------REGNVRVSRE 138
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H G ++C R+ + + S D L DIE + T
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALW------------------DIETGQQTTTF 180
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GHT DV+ L+ +PD + SG+ D + +W++ G+C GH S + + + P G+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 182 IASQSDDKTVIIW 194
A+ SDD T ++
Sbjct: 241 FATGSDDATCRLF 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH A + ++W D +L S S D + IW+ T + SS V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 180 SFIASQSDDKTVIIW 194
+++A D I+
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 33.5 bits (75), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G + S+ + P F +G D ++W+++ E R T H +N
Sbjct: 183 HTG-DVMSLSLAPDTRLFVSGACDASAKLWDVR---------EGMCR--QTFTGHESDIN 230
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ + +G A+GSDD + + + E + +I +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNI------------ICGITS 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+++S +L +G D ++W+ VL GH + V + G +A+ S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 191 VIIW 194
+ IW
Sbjct: 336 LKIW 339
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 74 WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+A G Y+A G D + I+ K G N +V+ L GHT + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRF 151
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
D+ I+ S S D T +W++ TG T GH+ V ++ P S + D + +
Sbjct: 152 LDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 194 WRTSDWSLAHRTDGHWAKSLGSTFF 218
W + GH + FF
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFF 235
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TLR H + + W R + S S D ++I + S TT N A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWD----SYTT-----------NKVHAIP 94
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
LR ++ V+ ++P + +A G LDN I+N+ T
Sbjct: 95 LR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 80/193 (41%), Gaps = 32/193 (16%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
I + SWV + P A GG D+ I+N+K+ E R+
Sbjct: 93 IPLRSSWV-------MTCAYAPSGNYVACGGLDNICSIYNLKT-------REGNVRVSRE 138
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
L H G ++C R+ + + S D L DIE + T
Sbjct: 139 LAGHTGYLSCCRFLDDNQIVTSSGDTTCALW------------------DIETGQQTTTF 180
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
GHT DV+ L+ +PD + SG+ D + +W++ G+C GH S + + + P G+
Sbjct: 181 TGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNA 240
Query: 182 IASQSDDKTVIIW 194
A+ SDD T ++
Sbjct: 241 FATGSDDATCRLF 253
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH A + ++W D +L S S D + IW+ T + SS V A+ P G
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 180 SFIASQSDDKTVIIW 194
+++A D I+
Sbjct: 110 NYVACGGLDNICSIY 124
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 70/184 (38%), Gaps = 27/184 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G + S+ + P F +G D ++W+++ E R T H +N
Sbjct: 183 HTG-DVMSLSLAPDTRLFVSGACDASAKLWDVR---------EGMCR--QTFTGHESDIN 230
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
+ + +G A+GSDD + + + E + +I +
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQ---ELMTYSHDNI------------ICGITS 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+++S +L +G D ++W+ VL GH + V + G +A+ S D
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 191 VIIW 194
+ IW
Sbjct: 336 LKIW 339
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 57/145 (39%), Gaps = 14/145 (9%)
Query: 74 WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+A G Y+A G D + I+ K G N +V+ L GHT + +
Sbjct: 105 YAPSGNYVACGGLDNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRF 151
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
D+ I+ S S D T +W++ TG T GH+ V ++ P S + D + +
Sbjct: 152 LDDNQIVTS-SGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210
Query: 194 WRTSDWSLAHRTDGHWAKSLGSTFF 218
W + GH + FF
Sbjct: 211 WDVREGMCRQTFTGHESDINAICFF 235
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 17/96 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TLR H + + W R + S S D ++I + S TT N A+
Sbjct: 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWD----SYTT-----------NKVHAIP 94
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156
LR ++ V+ ++P + +A G LDN I+N+ T
Sbjct: 95 LR--SSWVMTCAYAPSGNYVACGGLDNICSIYNLKT 128
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 63.9 bits (154), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 25 ALRFATGG------GDHKVRIWNMKS--VGKNFENDESTQRLLATLRDHFGSVNCVRWAK 76
AL++A GG D VR+W++K FE ST R L + K
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-----------YK 215
Query: 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDI------ENWKVAMTLRGHTADVVD 130
+ +YI +GS D + + + S + G + EN LRGH A V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRT 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+ S +I+ SGS DNT+ +W+++ C +L GH+ + +D S S D T
Sbjct: 276 V--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTT 333
Query: 191 VIIWRTSDWSLAHRTDGHWA 210
+ IW + L + GH A
Sbjct: 334 IRIWDLENGELXYTLQGHTA 353
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 61/152 (40%), Gaps = 21/152 (13%)
Query: 49 FENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGE 108
F E + LR H SV V + HG + SGS D +++
Sbjct: 253 FHTPEENPYFVGVLRGHXASVRTV--SGHGNIVVSGSYDNTLIV---------------- 294
Query: 109 PPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS 168
D+ K L GHT + + + S S D TI IW++ G L+GH++
Sbjct: 295 -WDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTA 353
Query: 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200
LV + F+ S + D ++ W +D+S
Sbjct: 354 LVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 26/214 (12%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH V+ +D+ + +G+ D I +++ L GH V + + G
Sbjct: 116 TLRGHXTSVITC-LQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 173
Query: 180 SFIASQSDDKTVIIWRTSDWSLAHRTDGH--WAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237
+ S S D+TV +W H +GH + L ++ + + G T H ++
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSK 297
P+ S+ V + GE H+ P++ + E VG G
Sbjct: 234 LPKESS-VPDHGE--------EHDYPLVF-------------HTPEENPYFVGVLRGHXA 271
Query: 298 IGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV 331
S N++ GS D T+ VW A + L++
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYI 305
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 27/200 (13%)
Query: 25 ALRFATGG------GDHKVRIWNMKS--VGKNFENDESTQRLLATLRDHFGSVNCVRWAK 76
AL++A GG D VR+W++K FE ST R L + K
Sbjct: 167 ALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVE-----------YK 215
Query: 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDI------ENWKVAMTLRGHTADVVD 130
+ +YI +GS D + + + S + G + EN LRGH A V
Sbjct: 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT 275
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+ S +I+ SGS DNT+ +W+++ C +L GH+ + +D S S D T
Sbjct: 276 V--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 333
Query: 191 VIIWRTSDWSLAHRTDGHWA 210
+ IW + L + GH A
Sbjct: 334 IRIWDLENGELMYTLQGHTA 353
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 62/152 (40%), Gaps = 21/152 (13%)
Query: 49 FENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGE 108
F E + LR H SV V + HG + SGS D +++
Sbjct: 253 FHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIV---------------- 294
Query: 109 PPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS 168
D+ K L GHT + + + S S+D TI IW++ G L+GH++
Sbjct: 295 -WDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA 353
Query: 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200
LV + F+ S + D ++ W +D+S
Sbjct: 354 LVGLLRLSD--KFLVSAAADGSIRGWDANDYS 383
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 100/258 (38%), Gaps = 27/258 (10%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TLRGH V+ +D+ + +G+ D I +++ L GH V + + G
Sbjct: 116 TLRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-G 173
Query: 180 SFIASQSDDKTVIIWRTSDWSLAHRTDGH--WAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237
+ S S D+TV +W H +GH + L ++ + + G T H ++
Sbjct: 174 GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWK 233
Query: 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSK 297
P+ S+ V + GE H+ P++ + E VG G
Sbjct: 234 LPKESS-VPDHGE--------EHDYPLVF-------------HTPEENPYFVGVLRGHMA 271
Query: 298 IGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL 357
S N++ GS D T+ VW A + L++ T + + + + S+
Sbjct: 272 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-HTDRIYSTIYDHERKRCISASM 330
Query: 358 DGTVANFHFEVKELGHRL 375
D T+ + E EL + L
Sbjct: 331 DTTIRIWDLENGELMYTL 348
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 78/168 (46%), Gaps = 34/168 (20%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86
R +G D +R+W+++ T + L L H +V CV++ GR + SG+
Sbjct: 211 RVVSGSRDATLRVWDIE-----------TGQCLHVLMGHVAAVRCVQYD--GRRVVSGAY 257
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146
D ++ + + P+ E TL+GHT V L + D + SGSLD
Sbjct: 258 DFMVKVWD---------------PETET--CLHTLQGHTNRVYSLQF--DGIHVVSGSLD 298
Query: 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+I +W++ TG C L GH SL G+ + + + S + D TV IW
Sbjct: 299 TSIRVWDVETGNCIHTLTGHQSLTSGM--ELKDNILVSGNADSTVKIW 344
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 78/177 (44%), Gaps = 37/177 (20%)
Query: 21 VQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY 80
VQ R +G D V++W D T+ L TL+ H V +++ G +
Sbjct: 245 VQYDGRRVVSGAYDFMVKVW-----------DPETETCLHTLQGHTNRVYSLQFD--GIH 291
Query: 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140
+ SGS D I + D+E TL GH + + D+IL
Sbjct: 292 VVSGSLDTSIRV-----------------WDVETGNCIHTLTGHQSLTSGM--ELKDNIL 332
Query: 141 ASGSLDNTIHIWNMSTGICTAVLRG---HSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
SG+ D+T+ IW++ TG C L+G H S V + ++ +F+ + SDD TV +W
Sbjct: 333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK--NFVITSSDDGTVKLW 387
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/149 (30%), Positives = 62/149 (41%), Gaps = 29/149 (19%)
Query: 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG 123
DH + C+++ G I SGSDD + + G K TL G
Sbjct: 119 DHV--ITCLQFC--GNRIVSGSDDNTLKVWSAVTG-----------------KCLRTLVG 157
Query: 124 HTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
HT V WS D+I+ SGS D T+ +WN TG C L GH+S V+ +
Sbjct: 158 HTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE--KR 211
Query: 182 IASQSDDKTVIIWRTSDWSLAHRTDGHWA 210
+ S S D T+ +W H GH A
Sbjct: 212 VVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 73/179 (40%), Gaps = 34/179 (18%)
Query: 30 TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89
+G D +++WN + T + TL H +V C+ H + + SGS D
Sbjct: 174 SGSTDRTLKVWNAE-----------TGECIHTLYGHTSTVRCMH--LHEKRVVSGSRDAT 220
Query: 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTI 149
+ + DIE + L GH A V + + D + SG+ D +
Sbjct: 221 LRV-----------------WDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMV 261
Query: 150 HIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
+W+ T C L+GH++ V + +D G + S S D ++ +W + H GH
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLTGH 318
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 76/174 (43%), Gaps = 36/174 (20%)
Query: 26 LRFATG-----GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY 80
LRF G D + +W+M S D + +R+L H +VN V + +Y
Sbjct: 219 LRFNNGMMVTCSKDRSIAVWDMAS-----PTDITLRRVLV---GHRAAVNVVDF--DDKY 268
Query: 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140
I S S D+ I K + T EF TL GH + L + D ++
Sbjct: 269 IVSASGDRTI----KVWNTSTCEF-------------VRTLNGHKRGIACLQYR--DRLV 309
Query: 141 ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
SGS DNTI +W++ G C VL GH LV+ + +D I S + D + +W
Sbjct: 310 VSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVW 361
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 37/191 (19%)
Query: 21 VQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY 80
+Q + +G D+ ++IW D++T L H GSV C+++ + R
Sbjct: 139 LQYDDQKIVSGLRDNTIKIW-----------DKNTLECKRILTGHTGSVLCLQYDE--RV 185
Query: 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140
I +GS D + + + G ++ TL H V+ L + ++ ++
Sbjct: 186 IITGSSDSTVRVWDVNTG-----------------EMLNTLIHHCEAVLHLRF--NNGMM 226
Query: 141 ASGSLDNTIHIWNMSTGI---CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
+ S D +I +W+M++ VL GH + V V +D +I S S D+T+ +W TS
Sbjct: 227 VTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTS 284
Query: 198 DWSLAHRTDGH 208
+GH
Sbjct: 285 TCEFVRTLNGH 295
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 66/176 (37%), Gaps = 43/176 (24%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+ GD +++WN ST + TL H + C+++ R + SGS D
Sbjct: 269 IVSASGDRTIKVWNT-----------STCEFVRTLNGHKRGIACLQY--RDRLVVSGSSD 315
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147
I + DIE L GH V + + D+ + SG+ D
Sbjct: 316 NTIRLW-----------------DIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDG 356
Query: 148 TIHIWNMSTG---------ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
I +W++ +C L HS V + +D I S S D T++IW
Sbjct: 357 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 410
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 59/208 (28%)
Query: 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVA 118
+ATL H V +RWA GR++ASG +D ++ + PG G W
Sbjct: 234 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-------------GWVPL 280
Query: 119 MTLRGHTADVVDLNWSP-DDSILASG--SLDNTIHIWNMSTGIC---------------- 159
T H V + W P ++LA+G + D I IWN+ +G C
Sbjct: 281 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 340
Query: 160 ---------------------------TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192
A L+GH+S V + P G+ +AS + D+T+
Sbjct: 341 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 400
Query: 193 IWRTSDWSLAHRTDGHWAKSLGSTFFRR 220
+WR + A R + A + S+ +
Sbjct: 401 LWRCFELDPARRREREKASAAKSSLIHQ 428
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAW 175
TL GH+ +V L W+PD LASG DN +++W + G + H VK VAW
Sbjct: 236 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 295
Query: 176 DPIGSFIASQ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232
P S + + + D+ + IW + D H + + WSP + +
Sbjct: 296 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------SQVCSILWSPHYKELIS 348
Query: 233 THGFQK 238
HGF +
Sbjct: 349 GHGFAQ 354
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 35/130 (26%)
Query: 28 FATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG- 84
ATGGG D +RIWN+ S D +Q V + W+ H + + SG
Sbjct: 303 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ------------VCSILWSPHYKELISGH 350
Query: 85 --SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142
+ +Q+++ K P KVA L+GHT+ V+ L SPD + +AS
Sbjct: 351 GFAQNQLVIW--KYPTMA---------------KVA-ELKGHTSRVLSLTMSPDGATVAS 392
Query: 143 GSLDNTIHIW 152
+ D T+ +W
Sbjct: 393 AAADETLRLW 402
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 144 SLDNTIHIWNMSTGICTAVLRGHS--SLVKGVAWDPIGSFIASQSDDKTVIIW 194
+LDN++++W+ S+G +L+ + VAW G+++A + V +W
Sbjct: 133 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 80/208 (38%), Gaps = 59/208 (28%)
Query: 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVA 118
+ATL H V +RWA GR++ASG +D ++ + PG G W
Sbjct: 223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-------------GWVPL 269
Query: 119 MTLRGHTADVVDLNWSP-DDSILASG--SLDNTIHIWNMSTGIC---------------- 159
T H V + W P ++LA+G + D I IWN+ +G C
Sbjct: 270 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 329
Query: 160 ---------------------------TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192
A L+GH+S V + P G+ +AS + D+T+
Sbjct: 330 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 389
Query: 193 IWRTSDWSLAHRTDGHWAKSLGSTFFRR 220
+WR + A R + A + S+ +
Sbjct: 390 LWRCFELDPARRREREKASAAKSSLIHQ 417
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAW 175
TL GH+ +V L W+PD LASG DN +++W + G + H VK VAW
Sbjct: 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 284
Query: 176 DPIGSFIASQ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232
P S + + + D+ + IW + D H + + WSP + +
Sbjct: 285 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------SQVCSILWSPHYKELIS 337
Query: 233 THGFQK 238
HGF +
Sbjct: 338 GHGFAQ 343
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 58/130 (44%), Gaps = 35/130 (26%)
Query: 28 FATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG- 84
ATGGG D +RIWN+ S D +Q V + W+ H + + SG
Sbjct: 292 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ------------VCSILWSPHYKELISGH 339
Query: 85 --SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142
+ +Q+++ K P KVA L+GHT+ V+ L SPD + +AS
Sbjct: 340 GFAQNQLVIW--KYPTMA---------------KVA-ELKGHTSRVLSLTMSPDGATVAS 381
Query: 143 GSLDNTIHIW 152
+ D T+ +W
Sbjct: 382 AAADETLRLW 391
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 144 SLDNTIHIWNMSTGICTAVLRGHS--SLVKGVAWDPIGSFIASQSDDKTVIIW 194
+LDN++++W+ S+G +L+ + VAW G+++A + V +W
Sbjct: 122 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%), Gaps = 24/181 (13%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ + P A GG D+K ++ + + KN EN + ++ +A ++ + +
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPL-TFDKN-ENMAAKKKSVAMHTNYLSACS----- 161
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135
+ SD Q++ G GT D+E+ ++ + GH ADV+ L+ +P
Sbjct: 162 ------FTNSDMQIL----TASGDGTCALW-----DVESGQLLQSFHGHGADVLCLDLAP 206
Query: 136 DDS--ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
++ SG D +W+M +G C H S V V + P G AS SDD T +
Sbjct: 207 SETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRL 266
Query: 194 W 194
+
Sbjct: 267 Y 267
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 75/184 (40%), Gaps = 28/184 (15%)
Query: 13 GMQIFSIDVQPGAL--RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
G + +D+ P F +GG D K +W+M+S + + H VN
Sbjct: 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS-----------GQCVQAFETHESDVN 244
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
VR+ G ASGSDD +++ + + S E V +L G
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIY-SKESIIFGASSVDFSLSGR------ 297
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
+L +G D TI++W++ G ++L GH + V + P G+ S S D T
Sbjct: 298 --------LLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHT 349
Query: 191 VIIW 194
+ +W
Sbjct: 350 LRVW 353
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%)
Query: 116 KVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175
K TL+GH V+ ++W D + S S D + +W+ T + + V A+
Sbjct: 55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAY 114
Query: 176 DPIGSFIASQSDDKTVIIW 194
P G IA D ++
Sbjct: 115 APSGCAIACGGLDNKCSVY 133
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 57/166 (34%), Gaps = 37/166 (22%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TL+ H V C+ W K R I S S D +++ W T
Sbjct: 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIV----------------------WDSFTT 96
Query: 121 LRGHTAD-----VVDLNWSPDDSILASGSLDNTIHIW--------NMSTGICTAVLRGHS 167
+ H V+ ++P +A G LDN ++ NM+ + + H+
Sbjct: 97 NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAM--HT 154
Query: 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL 213
+ + ++ I + S D T +W L GH A L
Sbjct: 155 NYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL 200
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 54/124 (43%), Gaps = 24/124 (19%)
Query: 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140
I SGSDD + I E P +K T HT V + ++PD S+
Sbjct: 163 IISGSDDNTVAIFEGPP-----------------FKFKSTFGEHTKFVHSVRYNPDGSLF 205
Query: 141 ASGSLDNTIHIWNMSTGICTAVLR-------GHSSLVKGVAWDPIGSFIASQSDDKTVII 193
AS D TI ++N G T V HS V G+ W P G+ IAS S DKT+ I
Sbjct: 206 ASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKI 265
Query: 194 WRTS 197
W +
Sbjct: 266 WNVA 269
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 22/140 (15%)
Query: 18 SIDVQPG-ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK 76
S+D +P R +G D+ V I+ G F + +T +H V+ VR+
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFE----GPPF-------KFKSTFGEHTKFVHSVRYNP 200
Query: 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136
G AS D I+++ G+ T F E ++N H+ V L WSPD
Sbjct: 201 DGSLFASTGGDGTIVLYNGVDGTKTGVF---EDDSLKN-------VAHSGSVFGLTWSPD 250
Query: 137 DSILASGSLDNTIHIWNMST 156
+ +AS S D TI IWN++T
Sbjct: 251 GTKIASASADKTIKIWNVAT 270
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 124 HTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155
HTA V ++WSPD+ LA+GSLDN++ +WNM+
Sbjct: 535 HTAKVACVSWSPDNVRLATGSLDNSVIVWNMN 566
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 83/214 (38%), Gaps = 49/214 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKN--FENDESTQRLLATLRD--HFGSVNC 71
+ S+ P FA+ GGD + ++N K FE+D +L++ H GSV
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDD--------SLKNVAHSGSVFG 244
Query: 72 VRWAKHGRYIASGSDDQVI------------------LIHEKKPG-------------SG 100
+ W+ G IAS S D+ I I +++ G +G
Sbjct: 245 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 304
Query: 101 TTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT 160
F + E I+ + GH + L+ S D L S + I+ W++STGI
Sbjct: 305 FINFVNPELGSIDQVR-----YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN 359
Query: 161 AVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVII 193
V H++++ G+ G DD ++
Sbjct: 360 RVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVV 393
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 9/88 (10%)
Query: 2 IAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT 61
+A SW H ++ + P +R ATG D+ V +WNM N S ++
Sbjct: 526 LAHTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNM--------NKPSDHPIIIK 576
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQV 89
SVN V W +++G D +
Sbjct: 577 GAHAMSSVNSVIWLNETTIVSAGQDSNI 604
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 99/252 (39%), Gaps = 60/252 (23%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR---YIASG 84
A+ D KV IW EN +Q +A H SVN V+WA H + +
Sbjct: 70 LASCSYDGKVLIWKE-------ENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------- 135
SD +V ++ K+ G+ + + + H V +W+P
Sbjct: 121 SDGKVSVVEFKENGTTS----------------PIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 136 ----DDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDP---IGSFIAS 184
+ +G DN + IW + T + + L GHS V+ VAW P + S++AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 185 QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST-----FFRRLGWSPCGHFITTTHGFQKP 239
S D+T IIW T D G W K+L R WS G+ + + G K
Sbjct: 225 VSQDRTCIIW-TQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 278
Query: 240 RHSAPVLERGEW 251
LE G+W
Sbjct: 279 TLWKENLE-GKW 289
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH---GRYIAS 83
+F TGG D+ V+IW S D T L +TL H V V W+ Y+AS
Sbjct: 172 KFVTGGADNLVKIWKYNS-------DAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILAS 142
S D+ +I + G WK + DV+ +WS ++LA
Sbjct: 225 VSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 143 GSLDNTIHIW 152
DN + +W
Sbjct: 272 SGGDNKVTLW 281
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 67/252 (26%), Positives = 99/252 (39%), Gaps = 60/252 (23%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR---YIASG 84
A+ D KV IW EN +Q +A H SVN V+WA H + +
Sbjct: 72 LASCSYDGKVLIWKE-------ENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVAS 122
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------- 135
SD +V ++ K+ G+ + + + H V +W+P
Sbjct: 123 SDGKVSVVEFKENGTTS----------------PIIIDAHAIGVNSASWAPATIEEDGEH 166
Query: 136 ----DDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDP---IGSFIAS 184
+ +G DN + IW + T + + L GHS V+ VAW P + S++AS
Sbjct: 167 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 185 QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST-----FFRRLGWSPCGHFITTTHGFQKP 239
S D+T IIW T D G W K+L R WS G+ + + G K
Sbjct: 227 VSQDRTCIIW-TQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKV 280
Query: 240 RHSAPVLERGEW 251
LE G+W
Sbjct: 281 TLWKENLE-GKW 291
Score = 37.7 bits (86), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH---GRYIAS 83
+F TGG D+ V+IW + +D T L +TL H V V W+ Y+AS
Sbjct: 174 KFVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILAS 142
S D+ +I + G WK + DV+ +WS ++LA
Sbjct: 227 VSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKFPDVLWRASWSLSGNVLAL 273
Query: 143 GSLDNTIHIW 152
DN + +W
Sbjct: 274 SGGDNKVTLW 283
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 94/239 (39%), Gaps = 59/239 (24%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR---YIASG 84
A+ D KV IW EN +Q +A H SVN V+WA H + +
Sbjct: 70 LASCSYDGKVMIWKE-------ENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPMLLVAS 120
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------- 135
SD +V ++ K+ G+ + + + H V +W+P
Sbjct: 121 SDGKVSVVEFKENGTTS----------------PIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 136 ----DDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDP---IGSFIAS 184
+ +G DN + IW + T + + L GHS V+ VAW P + S++AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 185 QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST-----FFRRLGWSPCGHFITTTHGFQK 238
S D+T IIW T D G W K+L R WS G+ + + G K
Sbjct: 225 VSQDRTCIIW-TQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH---GRYIAS 83
+F TGG D+ V+IW + +D T L +TL H V V W+ Y+AS
Sbjct: 172 KFVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMAS 224
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILAS 142
S D+ +I + G WK + DV+ +WS ++LA
Sbjct: 225 VSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 143 GSLDNTIHIW 152
DN + +W
Sbjct: 272 SGGDNKVTLW 281
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 94/239 (39%), Gaps = 59/239 (24%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR---YIASG 84
A+ D KV IW EN +Q +A H SVN V+WA H + +
Sbjct: 70 LASCSYDGKVLIWKE-------ENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPLLLVAS 120
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------- 135
SD +V ++ K+ G+ + + + H V +W+P
Sbjct: 121 SDGKVSVVEFKENGTTS----------------PIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 136 ----DDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDP---IGSFIAS 184
+ +G DN + IW + T + + L GHS V+ VAW P + S++AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 185 QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST-----FFRRLGWSPCGHFITTTHGFQK 238
S D+T IIW T D G W K+L R WS G+ + + G K
Sbjct: 225 VSQDRTCIIW-TQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277
Score = 37.0 bits (84), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 24/130 (18%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH---GRYIAS 83
+F TGG D+ V+IW + +D T L +TL H V V W+ Y+AS
Sbjct: 172 KFVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILAS 142
S D+ +I + G WK + DV+ +WS ++LA
Sbjct: 225 VSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 143 GSLDNTIHIW 152
DN + +W
Sbjct: 272 SGGDNKVTLW 281
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 82/236 (34%), Gaps = 51/236 (21%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKN------------FENDESTQRLLATLR------- 63
P F T D +R+W K V KN F+ +E+ + +R
Sbjct: 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 951
Query: 64 -----DHF--GSVNCVRWAKHGRYIASGSDDQVILI--------------------HEKK 96
D+ V+C + H Y+A G +D I I H +
Sbjct: 952 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1011
Query: 97 PGSGTTEFGSGEPPDIE--NWKVA--MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152
G T S E I+ NW+ + L+ H V D D +L S S D T+ +W
Sbjct: 1012 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVW 1070
Query: 153 NMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
N+ TG H V A + +S S DKT IW S H GH
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1126
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85
L ATG D +++W++ K N T+ H SVN R++ +AS S
Sbjct: 714 LLLATGSNDFFLKLWDLNQ--KECRN---------TMFGHTNSVNHCRFSPDDELLASCS 762
Query: 86 DDQVILI------HEKKPGSGTTEFGSGE--PPDIE------NWK--------------- 116
D + + +E+K + F S E P D+E +W
Sbjct: 763 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822
Query: 117 ---------VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167
+A GH + + ++SP D + + +WN+ + + A RGH
Sbjct: 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 882
Query: 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRT 196
S V GV + P GS + SDD+T+ +W T
Sbjct: 883 SWVHGVMFSPDGSSFLTASDDQTIRVWET 911
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 30/132 (22%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
AT D KV+IW D +T +L+ T +H VNC + ++ A+GS
Sbjct: 672 IATCSADKKVKIW-----------DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145
+D + + D+ + T+ GHT V +SPDD +LAS S
Sbjct: 721 NDFFLKLW-----------------DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763
Query: 146 DNTIHIWNMSTG 157
D T+ +W++ +
Sbjct: 764 DGTLRLWDVRSA 775
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 119 MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI 178
+ +R HT V +S D +AS D T+ ++ TG ++ H V A+
Sbjct: 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 668
Query: 179 GSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
S+IA+ S DK V IW ++ L H D H
Sbjct: 669 DSYIATCSADKKVKIWDSATGKLVHTYDEH 698
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86
R A+ G D ++++ E+ ++LL ++ H V C ++ YIA+ S
Sbjct: 629 RIASCGADKTLQVFKA----------ETGEKLL-DIKAHEDEVLCCAFSSDDSYIATCSA 677
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PDDSILASGS 144
D+ + I + G K+ T H+ V +++ + +LA+GS
Sbjct: 678 DKKVKIWDSATG-----------------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
D + +W+++ C + GH++ V + P +AS S D T+ +W
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H+G + S + A +F++ D +IW+ + L L+ H G V
Sbjct: 1084 HQGT-VLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----------LHELKGHNGCVR 1131
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
C ++ G +A+G D+ I I G S P +E H V D
Sbjct: 1132 CSAFSLDGILLATGDDNGEIRIWNVSDGQ---LLHSCAPISVEEGTAT-----HGGWVTD 1183
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTG 157
+ +SPD L S + WN++TG
Sbjct: 1184 VCFSPDSKTLVSAG--GYLKWWNVATG 1208
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 82/236 (34%), Gaps = 51/236 (21%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKN------------FENDESTQRLLATLR------- 63
P F T D +R+W K V KN F+ +E+ + +R
Sbjct: 899 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAG 958
Query: 64 -----DHF--GSVNCVRWAKHGRYIASGSDDQVILI--------------------HEKK 96
D+ V+C + H Y+A G +D I I H +
Sbjct: 959 KTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQF 1018
Query: 97 PGSGTTEFGSGEPPDIE--NWKVA--MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152
G T S E I+ NW+ + L+ H V D D +L S S D T+ +W
Sbjct: 1019 TADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDSRLL-SWSFDGTVKVW 1077
Query: 153 NMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
N+ TG H V A + +S S DKT IW S H GH
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH 1133
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 84/209 (40%), Gaps = 49/209 (23%)
Query: 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85
L ATG D +++W++ K N T+ H SVN R++ +AS S
Sbjct: 721 LLLATGSNDFFLKLWDLNQ--KECRN---------TMFGHTNSVNHCRFSPDDELLASCS 769
Query: 86 DDQVILI------HEKKPGSGTTEFGSGE--PPDIE------NWK--------------- 116
D + + +E+K + F S E P D+E +W
Sbjct: 770 ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 829
Query: 117 ---------VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167
+A GH + + ++SP D + + +WN+ + + A RGH
Sbjct: 830 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL 889
Query: 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRT 196
S V GV + P GS + SDD+T+ +W T
Sbjct: 890 SWVHGVMFSPDGSSFLTASDDQTIRVWET 918
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 30/131 (22%)
Query: 29 ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGSD 86
AT D KV+IW D +T +L+ T +H VNC + ++ A+GS+
Sbjct: 680 ATCSADKKVKIW-----------DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSN 728
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146
D + + D+ + T+ GHT V +SPDD +LAS S D
Sbjct: 729 DFFLKLW-----------------DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD 771
Query: 147 NTIHIWNMSTG 157
T+ +W++ +
Sbjct: 772 GTLRLWDVRSA 782
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/90 (31%), Positives = 42/90 (46%)
Query: 119 MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI 178
+ +R HT V +S D +AS D T+ ++ TG ++ H V A+
Sbjct: 616 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSD 675
Query: 179 GSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
S+IA+ S DK V IW ++ L H D H
Sbjct: 676 DSYIATCSADKKVKIWDSATGKLVHTYDEH 705
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 74/170 (43%), Gaps = 30/170 (17%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86
R A+ G D ++++ E+ ++LL ++ H V C ++ YIA+ S
Sbjct: 636 RIASCGADKTLQVFKA----------ETGEKLL-DIKAHEDEVLCCAFSSDDSYIATCSA 684
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PDDSILASGS 144
D+ + I + G K+ T H+ V +++ + +LA+GS
Sbjct: 685 DKKVKIWDSATG-----------------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
D + +W+++ C + GH++ V + P +AS S D T+ +W
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 22/147 (14%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H+G + S + A +F++ D +IW+ + L L+ H G V
Sbjct: 1091 HQGT-VLSCAISSDATKFSSTSADKTAKIWSFDLLSP-----------LHELKGHNGCVR 1138
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130
C ++ G +A+G D+ I I G S P +E H V D
Sbjct: 1139 CSAFSLDGILLATGDDNGEIRIWNVSDGQ---LLHSCAPISVEEGTAT-----HGGWVTD 1190
Query: 131 LNWSPDDSILASGSLDNTIHIWNMSTG 157
+ +SPD L S + WN++TG
Sbjct: 1191 VCFSPDSKTLVSAG--GYLKWWNVATG 1215
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW- 74
I SI V P +G D V++WN E+ L T H V CV +
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNW----------ENNWALEQTFEGHEHFVMCVAFN 149
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
K ASG D+ + + + +G+ RG + VD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE------------RG--VNYVDYYPL 195
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
PD + + S D TI IW+ T C A L GH S V + P I S S+D T+ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 195 RTSDWSL 201
+S + +
Sbjct: 256 NSSTYKV 262
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-S 138
Y+ SGSDD + + + NW + T GH V+ + ++P D S
Sbjct: 111 YVLSGSDDLTVKLWNWE----------------NNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 139 ILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWDPI--GSFIASQSDDKTVIIWR 195
ASG LD T+ +W++ L G V V + P+ ++ + SDD T+ IW
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 196 TSDWSLAHRTDGH 208
S +GH
Sbjct: 215 YQTKSCVATLEGH 227
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR-TSDWSL 201
GS D I ++N +TG H ++ +A P ++ S SDD TV +W ++W+L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 202 AHRTDGH 208
+GH
Sbjct: 133 EQTFEGH 139
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW- 74
I SI V P +G D V++WN E+ L T H V CV +
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNW----------ENNWALEQTFEGHEHFVMCVAFN 149
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
K ASG D+ + + + +G+ RG + VD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE------------RG--VNYVDYYPL 195
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
PD + + S D TI IW+ T C A L GH S V + P I S S+D T+ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 195 RTSDWSL 201
+S + +
Sbjct: 256 NSSTYKV 262
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-S 138
Y+ SGSDD + + + NW + T GH V+ + ++P D S
Sbjct: 111 YVLSGSDDLTVKLWNWE----------------NNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 139 ILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWDPI--GSFIASQSDDKTVIIWR 195
ASG LD T+ +W++ L G V V + P+ ++ + SDD T+ IW
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 196 TSDWSLAHRTDGH 208
S +GH
Sbjct: 215 YQTKSCVATLEGH 227
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR-TSDWSL 201
GS D I ++N +TG H ++ +A P ++ S SDD TV +W ++W+L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 202 AHRTDGH 208
+GH
Sbjct: 133 EQTFEGH 139
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 75/180 (41%), Gaps = 38/180 (21%)
Query: 8 WVRHEGMQIFSID----------VQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR 57
W G QI SID P + ATG KV I+ ++S K + D +
Sbjct: 107 WDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKF 166
Query: 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV 117
+L+ + ++ G+Y+ASG+ D +I I DI K+
Sbjct: 167 ILS-----------IAYSPDGKYLASGAIDGIINIF-----------------DIATGKL 198
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
TL GH + L +SPD +L + S D I I+++ L GH+S V VA+ P
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 47/182 (25%), Positives = 82/182 (45%), Gaps = 28/182 (15%)
Query: 13 GMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCV 72
G I SI P A+G D + I+++ +T +LL TL H + +
Sbjct: 164 GKFILSIAYSPDGKYLASGAIDGIINIFDI-----------ATGKLLHTLEGHAMPIRSL 212
Query: 73 RWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLN 132
++ + + + SDD I I+ D+++ +A TL GH + V+++
Sbjct: 213 TFSPDSQLLVTASDDGYIKIY-----------------DVQHANLAGTLSGHASWVLNVA 255
Query: 133 WSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192
+ PDD+ S S D ++ +W++ T C H V GV ++ GS I S DD+ +
Sbjct: 256 FCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIH 315
Query: 193 IW 194
I+
Sbjct: 316 IY 317
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 48/90 (53%)
Query: 128 VVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD 187
++ + +SPD LASG++D I+I++++TG L GH+ ++ + + P + + SD
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD 226
Query: 188 DKTVIIWRTSDWSLAHRTDGHWAKSLGSTF 217
D + I+ +LA GH + L F
Sbjct: 227 DGYIKIYDVQHANLAGTLSGHASWVLNVAF 256
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 71/183 (38%), Gaps = 59/183 (32%)
Query: 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVA 118
+ATL H V +RWA GR++ASG +D ++ + PG G W
Sbjct: 143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEG-------------GWVPL 189
Query: 119 MTLRGHTADVVDLNWSP-DDSILASG--SLDNTIHIWNMSTGIC---------------- 159
T H V + W P ++LA+G + D I IWN+ +G C
Sbjct: 190 QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS 249
Query: 160 ---------------------------TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192
A L+GH+S V + P G+ +AS + D+T+
Sbjct: 250 PHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLR 309
Query: 193 IWR 195
+WR
Sbjct: 310 LWR 312
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 14/126 (11%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAW 175
TL GH+ +V L W+PD LASG DN +++W + G + H VK VAW
Sbjct: 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAW 204
Query: 176 DPIGSFIASQ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232
P S + + + D+ + IW + D H + + WSP + +
Sbjct: 205 CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-------SQVCSILWSPHYKELIS 257
Query: 233 THGFQK 238
HGF +
Sbjct: 258 GHGFAQ 263
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)
Query: 28 FATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85
ATGGG D +RIWN+ S D +Q V + W+ H + + SG
Sbjct: 212 LATGGGTSDRHIRIWNVCSGACLSAVDAHSQ------------VCSILWSPHYKELISGH 259
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145
G + + P + KVA L+GHT+ V+ L SPD + +AS +
Sbjct: 260 ------------GFAQNQLVIWKYPTMA--KVA-ELKGHTSRVLSLTMSPDGATVASAAA 304
Query: 146 DNTIHIW 152
D T+ +W
Sbjct: 305 DETLRLW 311
Score = 29.3 bits (64), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 144 SLDNTIHIWNMSTGICTAVLRGHS--SLVKGVAWDPIGSFIASQSDDKTVIIW 194
+LDN++++W+ S+G +L+ + VAW G+++A + V +W
Sbjct: 42 ALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 63/239 (26%), Positives = 93/239 (38%), Gaps = 59/239 (24%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR---YIASG 84
A+ D KV IW EN +Q +A H SVN V+WA H + +
Sbjct: 70 LASCSYDGKVXIWKE-------ENGRWSQ--IAVHAVHSASVNSVQWAPHEYGPXLLVAS 120
Query: 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------- 135
SD +V ++ K+ G+ + + + H V +W+P
Sbjct: 121 SDGKVSVVEFKENGTTS----------------PIIIDAHAIGVNSASWAPATIEEDGEH 164
Query: 136 ----DDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDP---IGSFIAS 184
+ +G DN + IW + T + + L GHS V+ VAW P + S+ AS
Sbjct: 165 NGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 185 QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST-----FFRRLGWSPCGHFITTTHGFQK 238
S D+T IIW T D G W K+L R WS G+ + + G K
Sbjct: 225 VSQDRTCIIW-TQD-----NEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK 277
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 52/130 (40%), Gaps = 24/130 (18%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH---GRYIAS 83
+F TGG D+ V+IW + +D T L +TL H V V W+ Y AS
Sbjct: 172 KFVTGGADNLVKIW-------KYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXAS 224
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILAS 142
S D+ +I + G WK + DV+ +WS ++LA
Sbjct: 225 VSQDRTCIIWTQDNEQGP-------------WKKTLLKEEKFPDVLWRASWSLSGNVLAL 271
Query: 143 GSLDNTIHIW 152
DN + +W
Sbjct: 272 SGGDNKVTLW 281
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 80/197 (40%), Gaps = 32/197 (16%)
Query: 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH 65
P ++R SI V P +G D V++WN +EN+ + ++ T H
Sbjct: 97 PDYIR-------SIAVHPTKPYVLSGSDDLTVKLWN-------WENNWALEQ---TFEGH 139
Query: 66 FGSVNCVRW-AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH 124
V CV + K ASG D+ + + + +G+ RG
Sbjct: 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE------------RG- 186
Query: 125 TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIAS 184
+ VD PD + + S D TI IW+ T C A L GH S V + P I S
Sbjct: 187 -VNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS 245
Query: 185 QSDDKTVIIWRTSDWSL 201
S+D T+ IW +S + +
Sbjct: 246 GSEDGTLKIWNSSTYKV 262
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-S 138
Y+ SGSDD + + + NW + T GH V+ + ++P D S
Sbjct: 111 YVLSGSDDLTVKLWNWE----------------NNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 139 ILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWDPIGS--FIASQSDDKTVIIWR 195
ASG LD T+ +W++ L G V V + P+ ++ + SDD T+ IW
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 196 TSDWSLAHRTDGH 208
S +GH
Sbjct: 215 YQTKSCVATLEGH 227
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR-TSDWSL 201
GS D I ++N +TG H ++ +A P ++ S SDD TV +W ++W+L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 202 AHRTDGH 208
+GH
Sbjct: 133 EQTFEGH 139
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/187 (27%), Positives = 73/187 (39%), Gaps = 25/187 (13%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW- 74
I SI V P +G D V++WN E+ L T H V CV +
Sbjct: 100 IRSIAVHPTKPYVLSGSDDLTVKLWNW----------ENNWALEQTFEGHEHFVMCVAFN 149
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
K ASG D+ + + + +G+ RG + VD
Sbjct: 150 PKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQE------------RG--VNYVDYYPL 195
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
PD + + S D TI IW+ T C A L GH S V + P I S S+D T+ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 195 RTSDWSL 201
+S + +
Sbjct: 256 NSSTYKV 262
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 56/133 (42%), Gaps = 20/133 (15%)
Query: 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-S 138
Y+ SGSDD + + + NW + T GH V+ + ++P D S
Sbjct: 111 YVLSGSDDLTVKLWNWE----------------NNWALEQTFEGHEHFVMCVAFNPKDPS 154
Query: 139 ILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWDPIGS--FIASQSDDKTVIIWR 195
ASG LD T+ +W++ L G V V + P+ ++ + SDD T+ IW
Sbjct: 155 TFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWD 214
Query: 196 TSDWSLAHRTDGH 208
S +GH
Sbjct: 215 YQTKSCVATLEGH 227
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
Query: 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR-TSDWSL 201
GS D I ++N +TG H ++ +A P ++ S SDD TV +W ++W+L
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL 132
Query: 202 AHRTDGH 208
+GH
Sbjct: 133 EQTFEGH 139
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 51/189 (26%), Positives = 75/189 (39%), Gaps = 31/189 (16%)
Query: 10 RHEGMQIFSIDVQ-PGALRFATGGG-DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG 67
R EG F DV FA DH +R+WN+ +N + + L +D
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNL-------QNGQCQYKFLGHTKD--- 111
Query: 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD 127
V V ++ R I SG D + + K G G HT
Sbjct: 112 -VLSVAFSPDNRQIVSGGRDNALRVWNVK-GECMHTLSRG---------------AHTDW 154
Query: 128 VVDLNWSP--DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ 185
V + +SP D ++ SG DN + +W+++TG L+GH++ V V P GS AS
Sbjct: 155 VSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASS 214
Query: 186 SDDKTVIIW 194
D +W
Sbjct: 215 DKDGVARLW 223
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 8/127 (6%)
Query: 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD 127
S+ C + + + S S D+ +L P ++E G P L GH+A
Sbjct: 18 SLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPD--------RRLEGHSAF 69
Query: 128 VVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD 187
V D+ S + + S S D+++ +WN+ G C GH+ V VA+ P I S
Sbjct: 70 VSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGR 129
Query: 188 DKTVIIW 194
D + +W
Sbjct: 130 DNALRVW 136
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 41/158 (25%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
+GG D+ V++W++ +T RL+ L+ H V V + G AS D
Sbjct: 169 IVSGGWDNLVKVWDL-----------ATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 88 QVILIHEKKPGSGTTEFGSGEPP-----------------------DIENWKVAMTL--- 121
V + + G +E +G P D+EN + + L
Sbjct: 218 GVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPE 277
Query: 122 ----RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155
+ + V + WS D S L SG DN I +W +S
Sbjct: 278 HQGSKKIVPECVSIAWSADGSTLYSGYTDNVIRVWGVS 315
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 33/146 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD--HFGSVNCVR 73
+ S+ P + +GG D+ +R+WN+K + TL H V+CVR
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKG------------ECMHTLSRGAHTDWVSCVR 159
Query: 74 WAKH--GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDL 131
++ I SG D ++ + + G T+ L+GHT V +
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRLVTD-----------------LKGHTNYVTSV 202
Query: 132 NWSPDDSILASGSLDNTIHIWNMSTG 157
SPD S+ AS D +W+++ G
Sbjct: 203 TVSPDGSLCASSDKDGVARLWDLTKG 228
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 123 GHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLR-------GHSSLVKGVA 174
GHTA V+D+ W P +D+++ASGS D T+ +W + G LR GH+ V VA
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 175 WDPIG-SFIASQSDDKTVIIW 194
W P + + S D +++W
Sbjct: 139 WHPTAQNVLLSAGXDNVILVW 159
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 65 HFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG 123
H V + W H IASGS+D +++ E G EP +TL G
Sbjct: 80 HTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR--EP--------VITLEG 129
Query: 124 HTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRG--HSSLVKGVAWDPIGS 180
HT V + W P ++L S DN I +W++ TG L H + V W G+
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 181 FIASQSDDKTV 191
I + DK V
Sbjct: 190 LICTSCRDKRV 200
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 162 VLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSL 201
++ GH++ V +AW P + IAS S+D TV++W D L
Sbjct: 76 LVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGL 116
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 9/81 (11%)
Query: 123 GHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLR-------GHSSLVKGVA 174
GHTA V+D+ W P +D+++ASGS D T+ +W + G LR GH+ V VA
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 175 WDPIG-SFIASQSDDKTVIIW 194
W P + + S D +++W
Sbjct: 139 WHPTAQNVLLSAGCDNVILVW 159
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 65 HFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG 123
H V + W H IASGS+D +++ E G EP +TL G
Sbjct: 80 HTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLR--EP--------VITLEG 129
Query: 124 HTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRG--HSSLVKGVAWDPIGS 180
HT V + W P ++L S DN I +W++ TG L H + V W G+
Sbjct: 130 HTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGA 189
Query: 181 FIASQSDDKTV 191
I + DK V
Sbjct: 190 LICTSCRDKRV 200
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 165 GHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSL 201
GH++ V +AW P + IAS S+D TV++W D L
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGL 116
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 85/186 (45%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ +I + S D ++ + K P SGE PD+
Sbjct: 124 NHEGEVNRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDP---SGECNPDLR------ 174
Query: 120 TLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+ + S L S S D+T+ +W+++ G A+ GHS++V+
Sbjct: 175 -LRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
VAW + S S +DD+ ++IW T + +H D H A+ L ++P
Sbjct: 234 DVAWHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAE------VNCLSFNPYS 287
Query: 228 HFITTT 233
FI T
Sbjct: 288 EFILAT 293
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L T H + V W+ H I +SG+
Sbjct: 291 LATGSADKTVALWDLRNL----------KLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 86 DDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G + E PP++ GHTA + D +W+P++ ++ S
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 144 SLDNTIHIWNMSTGI 158
S DN + IW M+ I
Sbjct: 396 SEDNIMQIWQMAENI 410
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 76/175 (43%), Gaps = 22/175 (12%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW-AKHGRYIASGS 85
+ DH V +W++ + K + ++ A H V V W H S +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAK----AIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGS 144
DDQ ++I + + S TT K + + HTA+V L+++P + ILA+GS
Sbjct: 250 DDQKLMIWDTR--SNTTS------------KPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 145 LDNTIHIWNM-STGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTS 197
D T+ +W++ + + H + V W P + +AS D+ + +W S
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 295 TSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFF---TQSVVDLSWSPDG 349
T+++ PY+ ++A GS D+T+ +W R L + H F + + WSP
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHTFESHKDEIFQVHWSPHN 331
Query: 350 YSLFACS 356
++ A S
Sbjct: 332 ETILASS 338
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ + + S D ++ + K P SGE PD+
Sbjct: 128 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---SGECQPDLR------ 178
Query: 120 TLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+P+ + L S S D+TI +W+++ + GH+++V+
Sbjct: 179 -LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 237
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
VAW + S S +DD+ ++IW T + + +H D H A+ L ++P
Sbjct: 238 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE------VNCLSFNPYS 291
Query: 228 HFITTT 233
FI T
Sbjct: 292 EFILAT 297
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 43/189 (22%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSD 86
F + D K+ IW+ + + +T + T+ H VNC+ + + +I A+GS
Sbjct: 249 FGSVADDQKLMIWDTR--------NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 300
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSP-DDSILASGS 144
D+ + + D+ N K+ + + H ++ + WSP +++ILAS
Sbjct: 301 DKTVALW-----------------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 343
Query: 145 LDNTIHIWNMST--------------GICTAVLRGHSSLVKGVAWDPIGSF-IASQSDDK 189
D +H+W++S + GH++ + +W+P + I S S+D
Sbjct: 344 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 403
Query: 190 TVIIWRTSD 198
+ +W+ ++
Sbjct: 404 IMQVWQMAE 412
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L + H + V+W+ H I +SG+
Sbjct: 295 LATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETILASSGT 344
Query: 86 DDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G +TE PP++ GHTA + D +W+P++ I+ S
Sbjct: 345 DRRLHVWDLSKIGEEQSTEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWIICSV 399
Query: 144 SLDNTIHIWNMSTGI 158
S DN + +W M+ +
Sbjct: 400 SEDNIMQVWQMAENV 414
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 163 LRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221
LRGH G++W+P + ++ S SDD T+ +W + HR AK++ +
Sbjct: 179 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID--AKNIFT------ 230
Query: 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMF---RRNS 278
GH V+E W L H + V + + RN+
Sbjct: 231 -----GH--------------TAVVEDVAW-----HLLHESLFGSVADDQKLMIWDTRNN 266
Query: 279 ASSQEVKAAPVGWTNGTSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFF 336
+S+ T+++ PY+ ++A GS D+T+ +W R L + H F
Sbjct: 267 NTSKPSHTVDAH----TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHSF 319
Query: 337 ---TQSVVDLSWSPDGYSLFACSLDGTVANFH-FEVKELGHRLS--DAE 379
+ + WSP ++ A S GT H +++ ++G S DAE
Sbjct: 320 ESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAE 366
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ + + S D ++ + K P SGE PD+
Sbjct: 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---SGECQPDLR------ 176
Query: 120 TLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+P+ + L S S D+TI +W+++ + GH+++V+
Sbjct: 177 -LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 235
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
VAW + S S +DD+ ++IW T + + +H D H A+ L ++P
Sbjct: 236 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE------VNCLSFNPYS 289
Query: 228 HFITTT 233
FI T
Sbjct: 290 EFILAT 295
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 43/189 (22%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSD 86
F + D K+ IW+ + + +T + T+ H VNC+ + + +I A+GS
Sbjct: 247 FGSVADDQKLMIWDTR--------NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 298
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSP-DDSILASGS 144
D+ + + D+ N K+ + + H ++ + WSP +++ILAS
Sbjct: 299 DKTVALW-----------------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 341
Query: 145 LDNTIHIWNMST--------------GICTAVLRGHSSLVKGVAWDPIGSF-IASQSDDK 189
D +H+W++S + GH++ + +W+P + I S S+D
Sbjct: 342 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 401
Query: 190 TVIIWRTSD 198
+ +W+ ++
Sbjct: 402 IMQVWQMAE 410
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L + H + V+W+ H I +SG+
Sbjct: 293 LATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETILASSGT 342
Query: 86 DDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G +TE PP++ GHTA + D +W+P++ I+ S
Sbjct: 343 DRRLHVWDLSKIGEEQSTEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWIICSV 397
Query: 144 SLDNTIHIWNMSTGI 158
S DN + +W M+ +
Sbjct: 398 SEDNIMQVWQMAENV 412
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 163 LRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221
LRGH G++W+P + ++ S SDD T+ +W + HR AK++ +
Sbjct: 177 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID--AKNIFT------ 228
Query: 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMF---RRNS 278
GH V+E W L H + V + + RN+
Sbjct: 229 -----GH--------------TAVVEDVAW-----HLLHESLFGSVADDQKLMIWDTRNN 264
Query: 279 ASSQEVKAAPVGWTNGTSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFF 336
+S+ T+++ PY+ ++A GS D+T+ +W R L + H F
Sbjct: 265 NTSKPSHTVDAH----TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHSF 317
Query: 337 ---TQSVVDLSWSPDGYSLFACSLDGTVANFH-FEVKELGHRLS--DAE 379
+ + WSP ++ A S GT H +++ ++G S DAE
Sbjct: 318 ESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAE 364
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ + + S D ++ + K P SGE PD+
Sbjct: 130 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---SGECQPDLR------ 180
Query: 120 TLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+P+ + L S S D+TI +W+++ + GH+++V+
Sbjct: 181 -LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE 239
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
VAW + S S +DD+ ++IW T + + +H D H A+ L ++P
Sbjct: 240 DVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE------VNCLSFNPYS 293
Query: 228 HFITTT 233
FI T
Sbjct: 294 EFILAT 299
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 43/189 (22%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSD 86
F + D K+ IW+ + + +T + T+ H VNC+ + + +I A+GS
Sbjct: 251 FGSVADDQKLMIWDTR--------NNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSA 302
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSP-DDSILASGS 144
D+ + + D+ N K+ + + H ++ + WSP +++ILAS
Sbjct: 303 DKTVALW-----------------DLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSG 345
Query: 145 LDNTIHIWNMST--------------GICTAVLRGHSSLVKGVAWDPIGSF-IASQSDDK 189
D +H+W++S + GH++ + +W+P + I S S+D
Sbjct: 346 TDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN 405
Query: 190 TVIIWRTSD 198
+ +W+ ++
Sbjct: 406 IMQVWQMAE 414
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L + H + V+W+ H I +SG+
Sbjct: 297 LATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETILASSGT 346
Query: 86 DDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G +TE PP++ GHTA + D +W+P++ I+ S
Sbjct: 347 DRRLHVWDLSKIGEEQSTEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWIICSV 401
Query: 144 SLDNTIHIWNMSTGI 158
S DN + +W M+ +
Sbjct: 402 SEDNIMQVWQMAENV 416
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 92/229 (40%), Gaps = 53/229 (23%)
Query: 163 LRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221
LRGH G++W+P + ++ S SDD T+ +W + HR AK++ +
Sbjct: 181 LRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVID--AKNIFT------ 232
Query: 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMF---RRNS 278
GH V+E W L H + V + + RN+
Sbjct: 233 -----GH--------------TAVVEDVAW-----HLLHESLFGSVADDQKLMIWDTRNN 268
Query: 279 ASSQEVKAAPVGWTNGTSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFF 336
+S+ T+++ PY+ ++A GS D+T+ +W R L + H F
Sbjct: 269 NTSKPSHTVDAH----TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHSF 321
Query: 337 ---TQSVVDLSWSPDGYSLFACSLDGTVANFH-FEVKELGHRLS--DAE 379
+ + WSP ++ A S GT H +++ ++G S DAE
Sbjct: 322 ESHKDEIFQVQWSPHNETILASS--GTDRRLHVWDLSKIGEEQSTEDAE 368
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/186 (28%), Positives = 84/186 (45%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ +I + S D ++ + K P SGE PD +
Sbjct: 124 NHEGEVNRARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDP---SGECNPD-------L 173
Query: 120 TLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+ + S L S S D+T+ +W+++ G A+ GHS++V+
Sbjct: 174 RLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVE 233
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
VAW + S S +DD+ + IW T + +H D H A+ L ++P
Sbjct: 234 DVAWHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAE------VNCLSFNPYS 287
Query: 228 HFITTT 233
FI T
Sbjct: 288 EFILAT 293
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 60/135 (44%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L T H + V W+ H I +SG+
Sbjct: 291 LATGSADKTVALWDLRNL----------KLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 86 DDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G + E PP++ GHTA + D +W+P++ ++ S
Sbjct: 341 DRRLNVWDLSKIGEEQSAEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWVICSV 395
Query: 144 SLDNTIHIWNMSTGI 158
S DN IW + I
Sbjct: 396 SEDNIXQIWQXAENI 410
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW-AKHGRYIASGS 85
+ DH V +W++ + K + ++ A H V V W H S +
Sbjct: 194 HLLSASDDHTVCLWDINAGPKEGKIVDAK----AIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGS 144
DDQ + I + + S TT K + + HTA+V L+++P + ILA+GS
Sbjct: 250 DDQKLXIWDTR--SNTTS------------KPSHLVDAHTAEVNCLSFNPYSEFILATGS 295
Query: 145 LDNTIHIWNM-STGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTS 197
D T+ +W++ + + H + V W P + +AS D+ + +W S
Sbjct: 296 ADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLS 350
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 295 TSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFF---TQSVVDLSWSPDG 349
T+++ PY+ ++A GS D+T+ +W R L + H F + + WSP
Sbjct: 275 TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHTFESHKDEIFQVHWSPHN 331
Query: 350 YSLFACS 356
++ A S
Sbjct: 332 ETILASS 338
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGS 180
LRGH+ V D+ S D SGS D T+ +W+++TG T GH+ V VA+
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 141
Query: 181 FIASQSDDKTVIIWRT 196
I S S DKT+ +W T
Sbjct: 142 QIVSGSRDKTIKLWNT 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
LR H V+ V + G++ SGS D + + + G+ T F
Sbjct: 82 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF----------------- 124
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIG 179
GHT DV+ + +S D+ + SGS D TI +WN + G+C ++ HS V V + P
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNS 183
Query: 180 S--FIASQSDDKTVIIWRTSDWSLAHRTDGH 208
S I S DK V +W ++ L GH
Sbjct: 184 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 214
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 120 TLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKG 172
TL+GH V + +P D IL S S D TI +W ++ GI LRGHS V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMIL-SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 91
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTF 217
V G F S S D T+ +W + + R GH L F
Sbjct: 92 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 136
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 65/164 (39%), Gaps = 30/164 (18%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+ + +G D +++WN V K DES H V+CVR++
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----------HSEWVSCVRFS 180
Query: 76 KHGR--YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+ I S D+++ + ++ N K+ GHT + +
Sbjct: 181 PNSSNPIIVSCGWDKLVKVW-----------------NLANCKLKTNHIGHTGYLNTVTV 223
Query: 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
SPD S+ ASG D +W+++ G L G ++ + + P
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSP 266
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 41/76 (53%)
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGS 180
LRGH+ V D+ S D SGS D T+ +W+++TG T GH+ V VA+
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNR 118
Query: 181 FIASQSDDKTVIIWRT 196
I S S DKT+ +W T
Sbjct: 119 QIVSGSRDKTIKLWNT 134
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 67/151 (44%), Gaps = 22/151 (14%)
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL 121
LR H V+ V + G++ SGS D + + + G+ T F
Sbjct: 59 LRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRF----------------- 101
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIG 179
GHT DV+ + +S D+ + SGS D TI +WN + G+C ++ HS V V + P
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN-TLGVCKYTVQDESHSEWVSCVRFSPNS 160
Query: 180 S--FIASQSDDKTVIIWRTSDWSLAHRTDGH 208
S I S DK V +W ++ L GH
Sbjct: 161 SNPIIVSCGWDKLVKVWNLANCKLKTNHIGH 191
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 120 TLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKG 172
TL+GH V + +P D IL S S D TI +W ++ GI LRGHS V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMIL-SASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSD 68
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTF 217
V G F S S D T+ +W + + R GH L F
Sbjct: 69 VVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAF 113
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+ + +G D +++WN V K DES H V+CVR++
Sbjct: 108 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDES----------HSEWVSCVRFS 157
Query: 76 KHGR--YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133
+ I S D+++ + ++ N K+ GHT + +
Sbjct: 158 PNSSNPIIVSCGWDKLVKVW-----------------NLANCKLKTNHIGHTGYLNTVTV 200
Query: 134 SPDDSILASGSLDNTIHIWNMSTG 157
SPD S+ ASG D +W+++ G
Sbjct: 201 SPDGSLCASGGKDGQAMLWDLNEG 224
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 58/134 (43%), Gaps = 31/134 (23%)
Query: 27 RF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW--AKHGRYIAS 83
RF AT D KV+IWN T L+ T +H VNC + + H +A+
Sbjct: 676 RFIATCSVDKKVKIWN-----------SMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143
GS D + + D+ + T+ GHT V +SPDD +LAS
Sbjct: 725 GSSDCFLKLW-----------------DLNQKECRNTMFGHTNSVNHCRFSPDDKLLASC 767
Query: 144 SLDNTIHIWNMSTG 157
S D T+ +W+ ++
Sbjct: 768 SADGTLKLWDATSA 781
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 72/184 (39%), Gaps = 35/184 (19%)
Query: 23 PGALRFATGGGDHKVRIWNMKS--------VGKNFENDESTQRLLATLRDHFGSVNCVRW 74
P A+ D +++W+ S V + F N E Q + + V C W
Sbjct: 759 PDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVI------VKCCSW 812
Query: 75 AKHGRYIASGSDDQVIL--IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLN 132
+ G I + +++ L IH SG +I GH + + +
Sbjct: 813 SADGARIMVAAKNKIFLFDIH-----------TSGLLGEIHT--------GHHSTIQYCD 853
Query: 133 WSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192
+SP + + + +WN + A RGH S V GV + P GS + SDD+T+
Sbjct: 854 FSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIR 913
Query: 193 IWRT 196
+W T
Sbjct: 914 LWET 917
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 82/236 (34%), Gaps = 51/236 (21%)
Query: 23 PGALRFATGGGDHKVRIWNMKSVGKN------------FENDESTQRLLATLR------- 63
P F T D +R+W K V KN F+ +E + +R
Sbjct: 898 PDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLING 957
Query: 64 -----DHF--GSVNCVRWAKHGRYIASGSDDQVILI--------------------HEKK 96
D+ V+C + H +YIA G ++ I I H +
Sbjct: 958 RTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQF 1017
Query: 97 PGSGTTEFGSGEPPDIE--NWKV--AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152
T S + +I+ NW++ + LRGH V D + +L S S D T+ +W
Sbjct: 1018 TADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNSRLL-SWSFDGTVKVW 1076
Query: 153 NMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
N+ TG H V + +S S DKT IW H GH
Sbjct: 1077 NIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGH 1132
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 47/116 (40%), Gaps = 12/116 (10%)
Query: 119 MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI 178
+ +R HT V +S D +AS D T+ ++ TG ++ H V A+
Sbjct: 615 LVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTD 674
Query: 179 GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234
FIA+ S DK V IW + L H D H + C HF ++H
Sbjct: 675 DRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQ------------VNCCHFTNSSH 718
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 30/170 (17%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86
R A+ G D ++++ E+ ++LL ++ H V C ++ R+IA+ S
Sbjct: 635 RIASCGADKTLQVFKA----------ETGEKLLE-IKAHEDEVLCCAFSTDDRFIATCSV 683
Query: 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW--SPDDSILASGS 144
D+ + I G ++ T H+ V ++ S +LA+GS
Sbjct: 684 DKKVKIWNSMTG-----------------ELVHTYDEHSEQVNCCHFTNSSHHLLLATGS 726
Query: 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
D + +W+++ C + GH++ V + P +AS S D T+ +W
Sbjct: 727 SDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLW 776
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 63/163 (38%), Gaps = 41/163 (25%)
Query: 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR 63
++ +V H+G + S D+ A +F++ D +IW+ + L LR
Sbjct: 1083 KEKDFVCHQGT-VLSCDISHDATKFSSTSADKTAKIWSFDLLLP-----------LHELR 1130
Query: 64 DHFGSVNCVRWAKHGRYIASGSDDQVI---------LIHEKKPGSGTTEFGSGEPPDIEN 114
H G V C ++ +A+G D+ I L+H P S E G+
Sbjct: 1131 GHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLS---EEGAA------- 1180
Query: 115 WKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG 157
H V DL +SPD +L S I WN+ TG
Sbjct: 1181 --------THGGWVTDLCFSPDGKMLISAG--GYIKWWNVVTG 1213
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 32/186 (17%)
Query: 64 DHFGSVNCVRWAKHGRYI---ASGSDDQVILIHEKKPGSGTTEFGSGE-PPDIENWKVAM 119
+H G VN R+ I + S D ++ + K P SGE PD+
Sbjct: 122 NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDP---SGECNPDLR------ 172
Query: 120 TLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVK 171
LRGH + L+W+P+ S L S S D+TI +W++S + GH+++V+
Sbjct: 173 -LRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVE 231
Query: 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSPCG 227
V+W + S S +DD+ ++IW T + +H D H A+ L ++P
Sbjct: 232 DVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAE------VNCLSFNPYS 285
Query: 228 HFITTT 233
FI T
Sbjct: 286 EFILAT 291
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 63/135 (46%), Gaps = 19/135 (14%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI--ASGS 85
ATG D V +W+++++ + L + H + V+W+ H I +SG+
Sbjct: 289 LATGSADKTVALWDLRNL----------KLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 86 DDQVILIHEKKPGSGTT-EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASG 143
D ++ + K G + E PP++ GHTA + D +W+P++ ++ S
Sbjct: 339 DRRLNVWDLSKIGEEQSPEDAEDGPPEL-----LFIHGGHTAKISDFSWNPNEPWVICSV 393
Query: 144 SLDNTIHIWNMSTGI 158
S DN + +W M+ I
Sbjct: 394 SEDNIMQVWQMAENI 408
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW-AKHGRYIASGS 85
+ DH + +W++ +V K E + + T H V V W H S +
Sbjct: 192 HLLSASDDHTICLWDISAVPK--EGKVVDAKTIFT--GHTAVVEDVSWHLLHESLFGSVA 247
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGS 144
DDQ ++I + + + + K + ++ HTA+V L+++P + ILA+GS
Sbjct: 248 DDQKLMIWDTRSNNTS--------------KPSHSVDAHTAEVNCLSFNPYSEFILATGS 293
Query: 145 LDNTIHIWNM-STGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTS 197
D T+ +W++ + + H + V W P + +AS D+ + +W S
Sbjct: 294 ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLS 348
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
Query: 295 TSKIGGKESQPYN--VIAIGSQDRTITVWTTASPRPLFVAKHFFT---QSVVDLSWSPDG 349
T+++ PY+ ++A GS D+T+ +W R L + H F + + WSP
Sbjct: 273 TAEVNCLSFNPYSEFILATGSADKTVALWDL---RNLKLKLHSFESHKDEIFQVQWSPHN 329
Query: 350 YSLFACS 356
++ A S
Sbjct: 330 ETILASS 336
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/239 (21%), Positives = 95/239 (39%), Gaps = 37/239 (15%)
Query: 1 MIAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA 60
+I K H+ + + ++ V + +G D +++W++ + Q +L+
Sbjct: 116 LIVSKFCKYEHDDI-VSTVSVLSSGTQAVSGSKDICIKVWDL-----------AQQVVLS 163
Query: 61 TLRDHFGSVNCVRWAKHGRYI-ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM 119
+ R H V CV + H + S S+D IL+ + + ++ G P +
Sbjct: 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT----- 218
Query: 120 TLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI 178
L W P S + G + T+ + + + C HS V G+ + P
Sbjct: 219 ----------SLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH 268
Query: 179 G-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236
F+AS S+D ++ + +S S R+ H F R WSP H + TT G+
Sbjct: 269 SVPFLASLSEDCSLAVLDSS-LSELFRSQAH------RDFVRDATWSPLNHSLLTTVGW 320
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 74/175 (42%), Gaps = 28/175 (16%)
Query: 27 RFATGGG-DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85
+FA G D ++R+W++ + ST+R + +D V V ++ R I S S
Sbjct: 443 QFALSGSWDGELRLWDLAA-------GVSTRRFVGHTKD----VLSVAFSLDNRQIVSAS 491
Query: 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASG 143
D+ I + T GE GH V + +SP+ + S
Sbjct: 492 RDRTIKLWNTLGECKYTISEGGE--------------GHRDWVSCVRFSPNTLQPTIVSA 537
Query: 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198
S D T+ +WN+S + L GH+ V VA P GS AS D V++W ++
Sbjct: 538 SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGS 180
L GH+ V D+ S D SGS D + +W+++ G+ T GH+ V VA+
Sbjct: 426 LTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 181 FIASQSDDKTVIIWRT---SDWSLAHRTDGH 208
I S S D+T+ +W T ++++ +GH
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGH 516
Score = 37.4 bits (85), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 111 DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169
++ N K+ TL GHT V + SPD S+ ASG D + +W+++ G L +S +
Sbjct: 547 NLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVI 605
Score = 35.8 bits (81), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 8/105 (7%)
Query: 120 TLRGHTADVVDLNWSPDDS--ILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKG 172
T+R HT D+V +P D+ I+ S S D +I +W ++ G+ L GHS V+
Sbjct: 377 TMRAHT-DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVED 435
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTF 217
V G F S S D + +W + R GH L F
Sbjct: 436 VVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAF 480
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 55/163 (33%), Gaps = 53/163 (32%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D V++WN+ S +L +TL H G V+ V + G ASG D V+L+
Sbjct: 540 DKTVKVWNL-----------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLW 588
Query: 94 EKKPGS------------------------GTTEFGSG-----EPPDIENWKVAMTLRGH 124
+ G TE G +E+ KV +
Sbjct: 589 DLAEGKKLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVEDLKVDLKAEAE 648
Query: 125 TAD-------------VVDLNWSPDDSILASGSLDNTIHIWNM 154
AD LNWS D S L SG D I +W +
Sbjct: 649 KADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGI 691
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 58/250 (23%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
HE M I + R AT D V+I+++++ G Q L+A LR H G V
Sbjct: 12 HEDM-IHDAQMDYYGTRLATCSSDRSVKIFDVRNGG---------QILIADLRGHEGPVW 61
Query: 71 CVRWAK--HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV 128
V WA +G +AS S D+ ++I ++ G+ W+ + GH + V
Sbjct: 62 QVAWAHPMYGNILASCSYDRKVIIWREENGT---------------WEKSHEHAGHDSSV 106
Query: 129 VDLNWSPDDS--ILASGSLDNTIHIWNMS---TGICTAVLRGHSSLVKGVAWDPI---GS 180
+ W+P D ILA GS D I + + + H+ V+W P GS
Sbjct: 107 NSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGS 166
Query: 181 FI--------------ASQSDDKTVIIWRTSD---WSLAHRTDGHWAKSLGSTFFRRLGW 223
I AS D + +W+ + W + + H S + R + W
Sbjct: 167 LIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAH------SDWVRDVAW 220
Query: 224 SPCGHFITTT 233
+P T+T
Sbjct: 221 APSIGLPTST 230
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 30/139 (21%)
Query: 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-- 136
R+ + G D+ + L E++ G WK L H+ V D+ W+P
Sbjct: 181 RFASGGCDNLIKLWKEEEDG---------------QWKEEQKLEAHSDWVRDVAWAPSIG 225
Query: 137 --DSILASGSLDNTIHIWNM----STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190
S +AS S D + IW S +L + +V V+W + +A D
Sbjct: 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNK 285
Query: 191 VIIWRTSDWSLAHRTDGHW 209
V +W+ S DG W
Sbjct: 286 VTLWKES-------VDGQW 297
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 155
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 156 --------------VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLA 226
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233
G++ S S DKT+ +W + R GH + + ++ G T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 234 HGFQ-KPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAA 287
+ K + A +L +W + + + ++ I+ N M + + + +++A
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 288 PVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346
+G S I + P +IA +D I +W A+ + ++ V L++S
Sbjct: 192 FIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 347 PDGYSLFACSLDG 359
P+ Y L A + G
Sbjct: 247 PNRYWLAAATATG 259
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 86 DKTLRLWDVAT-------GETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 135 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D +++W
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 155
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 156 --------------VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLA 226
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233
G++ S S DKT+ +W + R GH + + ++ G T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 234 HGFQ-KPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAA 287
+ K + A +L +W + + + ++ I+ N M + + + +++A
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 288 PVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346
+G S I + P +IA +D I +W A+ + ++ V L++S
Sbjct: 192 FIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 347 PDGYSLFACSLDG 359
P+ Y L A + G
Sbjct: 247 PNRYWLAAATATG 259
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 86 DKTLRLWDVAT-------GETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 135 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D +++W
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 155
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 156 --------------VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLA 226
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233
G++ S S DKT+ +W + R GH + + ++ G T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 234 HGFQ-KPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAA 287
+ K + A +L +W + + + ++ I+ N M + + + +++A
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 288 PVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346
+G S I + P +IA +D I +W A+ + ++ V L++S
Sbjct: 192 FIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 347 PDGYSLFACSLDG 359
P+ Y L A + G
Sbjct: 247 PNRYWLAAATATG 259
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 86 DKTLRLWDVAT-------GETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 135 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D +++W
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 119
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 120 SMIISGSRDKTIKVW 134
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 110 VMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 155
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 156 --------------VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 201
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 202 LTASPDGTLIASAGKDGEIMLWNLA 226
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233
G++ S S DKT+ +W + R GH + + ++ G T
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 131
Query: 234 HGFQ-KPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAA 287
+ K + A +L +W + + + ++ I+ N M + + + +++A
Sbjct: 132 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 191
Query: 288 PVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346
+G S I + P +IA +D I +W A+ + ++ V L++S
Sbjct: 192 FIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 246
Query: 347 PDGYSLFACSLDG 359
P+ Y L A + G
Sbjct: 247 PNRYWLAAATATG 259
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 86 DKTLRLWDVAT-------GETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVW 134
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 135 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D +++W
Sbjct: 177 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 54 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA 113
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 114 SMIISGSRDKTIKVW 128
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 104 VMSVDIDKKASMIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 149
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 150 --------------VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINT 195
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 196 LTASPDGTLIASAGKDGEIMLWNLA 220
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 103/253 (40%), Gaps = 18/253 (7%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233
G++ S S DKT+ +W + R GH + + ++ G T
Sbjct: 66 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTI 125
Query: 234 HGFQ-KPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAA 287
+ K + A +L +W + + + ++ I+ N M + + + +++A
Sbjct: 126 KVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEAD 185
Query: 288 PVGWTNGTSKIGGKESQPY-NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346
+G S I + P +IA +D I +W A+ + ++ V L++S
Sbjct: 186 FIG---HNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFS 240
Query: 347 PDGYSLFACSLDG 359
P+ Y L A + G
Sbjct: 241 PNRYWLAAATATG 253
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 64/167 (38%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 80 DKTLRLWDVAT-------GETYQRFVG----HKSDVMSVDIDKKASMIISGSRDKTIKVW 128
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 129 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D +++W
Sbjct: 171 MVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 10/114 (8%)
Query: 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140
+ SGS D+ ++I + FG L GH V DL S ++
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHK----------ALTGHNHFVSDLALSQENCFA 91
Query: 141 ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
S S D T+ +W++ TG GH S V VA+ P I S ++ + +W
Sbjct: 92 ISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 12/86 (13%)
Query: 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF 66
S VR+ + + VQP A FA+ G D ++++WN NF+ + T + H
Sbjct: 166 SCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-----NFQ-------IRYTFKAHE 213
Query: 67 GSVNCVRWAKHGRYIASGSDDQVILI 92
+VN + + +G+YIA+G D+ +LI
Sbjct: 214 SNVNHLSISPNGKYIATGGKDKKLLI 239
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 7/80 (8%)
Query: 136 DDSILASGSLDNTIHIWNMST-------GICTAVLRGHSSLVKGVAWDPIGSFIASQSDD 188
D +L SGS D T+ IW + GI L GH+ V +A F S S D
Sbjct: 38 DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 189 KTVIIWRTSDWSLAHRTDGH 208
KT+ +W + R GH
Sbjct: 98 KTLRLWDLRTGTTYKRFVGH 117
Score = 35.8 bits (81), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 33/179 (18%), Positives = 75/179 (41%), Gaps = 17/179 (9%)
Query: 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW 74
+++S+ P + + G + ++++WN+ K F + E +H V+CVR+
Sbjct: 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECK-FSSAEK--------ENHSDWVSCVRY 170
Query: 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134
+ I ++ + P + + N+++ T + H ++V L+ S
Sbjct: 171 SP----IMKSANK----VQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSIS 222
Query: 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193
P+ +A+G D + IW++ S + +A++P ++A +D I
Sbjct: 223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIF 281
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 70/173 (40%), Gaps = 21/173 (12%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++++ + +R + H V V ++ R I S ++ I +
Sbjct: 97 DKTLRLWDLRT-------GTTYKRFVG----HQSEVYSVAFSPDNRQILSAGAEREIKLW 145
Query: 94 EKKPGSGTTEFGSGEPPDIENWK--VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHI 151
G +F S E + +W V + +A+ V P AS D + +
Sbjct: 146 NIL---GECKFSSAEKENHSDWVSCVRYSPIMKSANKVQ----PFAPYFASVGWDGRLKV 198
Query: 152 WNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR 204
WN + I + H S V ++ P G +IA+ DK ++IW + + R
Sbjct: 199 WNTNFQI-RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQR 250
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 21/123 (17%)
Query: 123 GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC---TAVLRGHSSLVKGVAWDPI- 178
GH ++V + +SPD+ + S + I +WN+ G C +A HS V V + PI
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRYSPIM 174
Query: 179 ---------GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHF 229
+ AS D + +W T ++ + + H + L SP G +
Sbjct: 175 KSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAH------ESNVNHLSISPNGKY 227
Query: 230 ITT 232
I T
Sbjct: 228 IAT 230
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
+ +GH+ V D + D + S S D T+ +W+++TG GH S V V D
Sbjct: 60 SFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKA 119
Query: 180 SFIASQSDDKTVIIW 194
S I S S DKT+ +W
Sbjct: 120 SXIISGSRDKTIKVW 134
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA 75
+ S+D+ A +G D +++W +K + LATL H V+ VR
Sbjct: 110 VXSVDIDKKASXIISGSRDKTIKVWTIKG------------QCLATLLGHNDWVSQVR-- 155
Query: 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW-----KVAMTLRGHTADVVD 130
++ +EK T +G ++ W ++ GH +++
Sbjct: 156 --------------VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINT 201
Query: 131 LNWSPDDSILASGSLDNTIHIWNMS 155
L SPD +++AS D I +WN++
Sbjct: 202 LTASPDGTLIASAGKDGEIXLWNLA 226
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 63/167 (37%), Gaps = 35/167 (20%)
Query: 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93
D +R+W++ + E+ QR + H V V K I SGS D+ I +
Sbjct: 86 DKTLRLWDVAT-------GETYQRFVG----HKSDVXSVDIDKKASXIISGSRDKTIKVW 134
Query: 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSI-LASGSLDN 147
K + TL GH V + P DDS+ + S D
Sbjct: 135 TIKG------------------QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+ WN++ A GH+S + + P G+ IAS D + +W
Sbjct: 177 XVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Query: 120 TLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMS-----TGICTAVLRGHSSLVKGV 173
TL GH V L S ++L S S D T+ W ++ G+ +GHS +V+
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208
G++ S S DKT+ +W + R GH
Sbjct: 72 TLTADGAYALSASWDKTLRLWDVATGETYQRFVGH 106
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 43.1 bits (100), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 76/203 (37%), Gaps = 45/203 (22%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G Q+ ID P + R T G D +W +K G+ ++ R+ R
Sbjct: 51 HNG-QVTGIDWAPDSNRIVTCGTDRNAYVWTLK--GRTWKPTLVILRINRAAR------- 100
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIEN--WKVAMTLRGHTADV 128
CVRWA + + A GS +VI I F + EN W + + V
Sbjct: 101 CVRWAPNEKKFAVGSGSRVISI---------CYF------EQENDWWVCKHIKKPIRSTV 145
Query: 129 VDLNWSPDDSILASGSLDNTIHI----------------WNMSTGICTAVLRGHSSL--V 170
+ L+W P+ +LA+GS D I W + SS V
Sbjct: 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205
Query: 171 KGVAWDPIGSFIASQSDDKTVII 193
GV + GS +A S D TV +
Sbjct: 206 HGVCFSANGSRVAWVSHDSTVCL 228
Score = 33.1 bits (74), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 45/281 (16%)
Query: 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV 128
++C W K IA ++ + I+EK SG W L+ H V
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEK---SGN------------KWVQVHELKEHNGQV 55
Query: 129 VDLNWSPDDSILASGSLDNTIHIWNMS--TGICTAVLRGHSSLVKGVAWDPIGSFIASQS 186
++W+PD + + + D ++W + T T V+ + + V W P A S
Sbjct: 56 TGIDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
Query: 187 DDKTVIIW---RTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT-THGFQKPRHS 242
+ + I + +DW + H K + ST L W P + + F+ S
Sbjct: 116 GSRVISICYFEQENDWWVCK----HIKKPIRSTVL-SLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302
A + E E A + G P F MF +S+ GW +G
Sbjct: 171 AYIKEVEERPAPTPW-GSKMP-----FGELMFESSSS---------CGWVHGVCFSANGS 215
Query: 303 SQPY----NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS 339
+ + + + D+ + V T AS +A F T+S
Sbjct: 216 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 256
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 309 IAIGSQDRTITVWTTASPRPLFVAKHF---FTQSVVDLSWSPDGYSLFACSLDGTVANFH 365
A+GS R I++ +V KH +V+ L W P+ L A S D F
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 366 FEVKELGHR 374
+KE+ R
Sbjct: 171 AYIKEVEER 179
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%)
Query: 120 TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG 179
TL+GH+ V L+W+P+ + + S S D + +WN T T ++ H V A+ P G
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG 120
Query: 180 SFIASQSDDKTVIIWRTS 197
+A D I+ S
Sbjct: 121 QSVACGGLDSACSIFNLS 138
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 57/164 (34%), Gaps = 46/164 (28%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
F +G D VR+W+++ T R + T H G +N V++ G+ +GSDD
Sbjct: 221 FISGSCDTTVRLWDLRI----------TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 270
Query: 88 QVILIHEKKPG---------------------------SGTTEFGSGEPPDIENWKVAM- 119
+ + + G SG F D W +
Sbjct: 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA 330
Query: 120 -------TLRG-HTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155
TL+ H + L S D S L +GS D + IW S
Sbjct: 331 EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%)
Query: 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIW 194
+C L+GHS V + W P ++I S S D +I+W
Sbjct: 57 VCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVW 93
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 25/142 (17%)
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
TL+ H G V + W +I S S D +++ T
Sbjct: 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKT-----------------HA 103
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVKGV 173
++ H V++ ++P+ +A G LD+ I+N+S+ + VL GH
Sbjct: 104 IKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSC 163
Query: 174 AWDP-IGSFIASQSDDKTVIIW 194
+ P + + + S D+T ++W
Sbjct: 164 QYVPDQETRLITGSGDQTCVLW 185
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/189 (19%), Positives = 66/189 (34%), Gaps = 35/189 (18%)
Query: 1 MIAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA 60
+ ++K ++ + P A GG D I+N+ S + + R+L
Sbjct: 96 LTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADR-DGNMPVSRVLT 154
Query: 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPP---------- 110
+ + S C + +GS DQ ++ + G + FGS P
Sbjct: 155 GHKGYASS--CQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLS 212
Query: 111 ----------------DIENWKVAMTLR------GHTADVVDLNWSPDDSILASGSLDNT 148
+ W + +T R GH D+ + + PD +GS D T
Sbjct: 213 INSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT 272
Query: 149 IHIWNMSTG 157
+++M TG
Sbjct: 273 CRLFDMRTG 281
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 76/203 (37%), Gaps = 45/203 (22%)
Query: 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN 70
H G Q+ +D P + R T G D +W +K G+ ++ R+ R
Sbjct: 51 HNG-QVTGVDWAPDSNRIVTCGTDRNAYVWTLK--GRTWKPTLVILRINRAAR------- 100
Query: 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIEN--WKVAMTLRGHTADV 128
CVRWA + + A GS +VI I F + EN W + + V
Sbjct: 101 CVRWAPNEKKFAVGSGSRVISI---------CYF------EQENDWWVCKHIKKPIRSTV 145
Query: 129 VDLNWSPDDSILASGSLDNTIHI----------------WNMSTGICTAVLRGHSSL--V 170
+ L+W P+ +LA+GS D I W + SS V
Sbjct: 146 LSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWV 205
Query: 171 KGVAWDPIGSFIASQSDDKTVII 193
GV + GS +A S D TV +
Sbjct: 206 HGVCFSANGSRVAWVSHDSTVCL 228
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 45/281 (16%)
Query: 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV 128
++C W K IA ++ + I+EK SG W L+ H V
Sbjct: 11 ISCHAWNKDRTQIAICPNNHEVHIYEK---SGN------------KWVQVHELKEHNGQV 55
Query: 129 VDLNWSPDDSILASGSLDNTIHIWNMS--TGICTAVLRGHSSLVKGVAWDPIGSFIASQS 186
++W+PD + + + D ++W + T T V+ + + V W P A S
Sbjct: 56 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115
Query: 187 DDKTVIIW---RTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT-THGFQKPRHS 242
+ + I + +DW + H K + ST L W P + + F+ S
Sbjct: 116 GSRVISICYFEQENDWWVCK----HIKKPIRSTVL-SLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302
A + E E A + G P F MF +S+ GW +G
Sbjct: 171 AYIKEVEERPAPTPW-GSKMP-----FGELMFESSSS---------CGWVHGVCFSANGS 215
Query: 303 SQPY----NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS 339
+ + + + D+ + V T AS +A F T+S
Sbjct: 216 RVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITES 256
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 309 IAIGSQDRTITVWTTASPRPLFVAKHF---FTQSVVDLSWSPDGYSLFACSLDGTVANFH 365
A+GS R I++ +V KH +V+ L W P+ L A S D F
Sbjct: 111 FAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFS 170
Query: 366 FEVKELGHR 374
+KE+ R
Sbjct: 171 AYIKEVEER 179
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 124 HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW--DPIGSF 181
HT V+D+ WS D S + + S D T +W++S+ + + H + VK + W P S
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSC 143
Query: 182 IASQSDDKTVIIWRT 196
+ + S DKT+ W T
Sbjct: 144 VMTGSWDKTLKFWDT 158
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 45/115 (39%), Gaps = 27/115 (23%)
Query: 99 SGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSI--------------LASGS 144
SGT+ FGS A T + +++ SPDDSI L +GS
Sbjct: 13 SGTSMFGS-----------ATTDNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGS 61
Query: 145 LDNTIHIWNM--STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197
N + W + S + H+ V V W GS + + S DKT +W S
Sbjct: 62 WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLS 116
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 89/192 (46%), Gaps = 24/192 (12%)
Query: 10 RHEGMQIFSIDVQPGALRFA-TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH--- 65
R G I ++D++P R+ +GG D + ++++++ + ++ + + + + RDH
Sbjct: 40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR--QSYYTCKAVCSIGRDHPDV 97
Query: 66 -FGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG 123
SV V+W H S S D+ + + + + + D+ N++ T+
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTN---------TLQTADVFNFE--ETVYS 146
Query: 124 HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI- 182
H V S ++A G+ + + ++ +G C+ +L+GH + V+W P +I
Sbjct: 147 HHMSPV----STKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYIL 202
Query: 183 ASQSDDKTVIIW 194
A+ S D V +W
Sbjct: 203 ATASADSRVKLW 214
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 66/171 (38%), Gaps = 21/171 (12%)
Query: 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87
TG + ++R+WN T LL L H + V+W K G +I S +
Sbjct: 123 IVTGVENGELRLWN------------KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVE 170
Query: 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV---VDLNWSPDDSILASGS 144
V ++ G+ F E ++ H+ D VD+ W DD + G
Sbjct: 171 NVTILWNVISGTVMQHFELKETG-----GSSINAENHSGDGSLGVDVEWVDDDKFVIPGP 225
Query: 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195
I ++ ++ T L GH + + ++ + S SDD T+ IW
Sbjct: 226 -KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 93/248 (37%), Gaps = 54/248 (21%)
Query: 125 TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIAS 184
T V L WS D + + +G + + +WN TG VL H + + V W+ G+ I S
Sbjct: 108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIIS 166
Query: 185 QSDDKTVIIWRTSDWSLAH-----RTDGHWAKSLGSTFFRRLG----WSPCGHFITTTHG 235
+ I+W ++ T G + + LG W F+
Sbjct: 167 MDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFV----- 221
Query: 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295
P+ + V + E T +GH+ PI V++FN T
Sbjct: 222 IPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-----------------------T 258
Query: 296 SKIGGKESQPYNVIAIGSQDRTITVWT--TASPRPLFVAKHFFTQSVVDLSWSPDGYSLF 353
+K+ + S D T+ +W + + F +QS+V SW D +
Sbjct: 259 NKL----------LLSASDDGTLRIWHGGNGNSQNCFYGH---SQSIVSASWVGDD-KVI 304
Query: 354 ACSLDGTV 361
+CS+DG+V
Sbjct: 305 SCSMDGSV 312
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 25/55 (45%)
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175
L GH + L ++ + +L S S D T+ IW+ G GHS + +W
Sbjct: 243 LIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASW 297
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 49 FENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGE 108
+E D + + T DH V CV WA I + S D+ ++EK+P GT
Sbjct: 38 YEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRP-DGT------- 89
Query: 109 PPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG----ICTAVLR 164
WK + L + WSP++ A GS I + + + R
Sbjct: 90 ------WKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR 143
Query: 165 GHSSLVKGVAWDPIGSFIASQSDDKTVII 193
S + + W P +A+ D+ +
Sbjct: 144 PLRSTILSLDWHPNNVLLAAGCADRKAYV 172
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 49/113 (43%), Gaps = 7/113 (6%)
Query: 118 AMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP 177
A+ L GH + + ++ + +L S S D++ +W G L GH+ + + D
Sbjct: 25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDC 84
Query: 178 IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFI 230
+ + S D ++ +W S+ W + +R+ +SPCG++
Sbjct: 85 FTKYCVTGSADYSIKLWDVSNGQCV----ATWKSPVP---VKRVEFSPCGNYF 130
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH 124
H V+ V + +GR++A+ S DQ I + + D NW+++ + R H
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDK-------------DTSNWELSDSWRAH 56
Query: 125 TADVVDLNW-SPD-DSILASGSLDNTIHIW 152
+ +V ++W SP+ I+AS S D T+ +W
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 91/223 (40%), Gaps = 56/223 (25%)
Query: 7 SWVRHEGMQIFSID-VQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRL---LAT 61
SW H+ I +ID P R A+ D V++W ++ + +E + R L T
Sbjct: 52 SWRAHDS-SIVAIDWASPEYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCT 105
Query: 62 LRDHFGSVNCVRWA--KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM 119
L D GS+ V++A G +A +D ++ +++ + EP D+ +W +
Sbjct: 106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD-----------ALEPSDLRSWTLTS 154
Query: 120 TLR-------GHTADVVDLNWSP-------------DDSILASGSLDNTIHIWNMSTGIC 159
+ H L+W P + +I+ D +H+
Sbjct: 155 EXKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-------- 206
Query: 160 TAVLRGHSSLVKGVAWDP-IG---SFIASQSDDKTVIIWRTSD 198
A L GH SL++ ++W P IG IA+ D + I++ ++
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH 124
H V+ V + +GR++A+ S DQ I + + D NW+++ + R H
Sbjct: 10 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDK-------------DTSNWELSDSWRAH 56
Query: 125 TADVVDLNW-SPD-DSILASGSLDNTIHIW 152
+ +V ++W SP+ I+AS S D T+ +W
Sbjct: 57 DSSIVAIDWASPEYGRIIASASYDKTVKLW 86
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 56/223 (25%)
Query: 7 SWVRHEGMQIFSID-VQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRL---LAT 61
SW H+ I +ID P R A+ D V++W ++ + +E + R L T
Sbjct: 52 SWRAHDS-SIVAIDWASPEYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCT 105
Query: 62 LRDHFGSVNCVRWA--KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM 119
L D GS+ V++A G +A +D ++ +++ + EP D+ +W +
Sbjct: 106 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD-----------ALEPSDLRSWTLTS 154
Query: 120 TLR-------GHTADVVDLNWSP-------------DDSILASGSLDNTIHIWNMSTGIC 159
++ H L+W P + +I+ D +H+
Sbjct: 155 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-------- 206
Query: 160 TAVLRGHSSLVKGVAWDP-IG---SFIASQSDDKTVIIWRTSD 198
A L GH SL++ ++W P IG IA+ D + I++ ++
Sbjct: 207 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 249
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 15/90 (16%)
Query: 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH 124
H V+ V + +GR++A+ S DQ I + + D NW+++ + R H
Sbjct: 8 HDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDK-------------DTSNWELSDSWRAH 54
Query: 125 TADVVDLNW-SPD-DSILASGSLDNTIHIW 152
+ +V ++W SP+ I+AS S D T+ +W
Sbjct: 55 DSSIVAIDWASPEYGRIIASASYDKTVKLW 84
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 92/223 (41%), Gaps = 56/223 (25%)
Query: 7 SWVRHEGMQIFSID-VQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRL---LAT 61
SW H+ I +ID P R A+ D V++W ++ + +E + R L T
Sbjct: 50 SWRAHDS-SIVAIDWASPEYGRIIASASYDKTVKLWE-----EDPDQEECSGRRWNKLCT 103
Query: 62 LRDHFGSVNCVRWA--KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM 119
L D GS+ V++A G +A +D ++ +++ + EP D+ +W +
Sbjct: 104 LNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYD-----------ALEPSDLRSWTLTS 152
Query: 120 TLR-------GHTADVVDLNWSP-------------DDSILASGSLDNTIHIWNMSTGIC 159
++ H L+W P + +I+ D +H+
Sbjct: 153 EMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-------- 204
Query: 160 TAVLRGHSSLVKGVAWDP-IG---SFIASQSDDKTVIIWRTSD 198
A L GH SL++ ++W P IG IA+ D + I++ ++
Sbjct: 205 AAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITE 247
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 123 GHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVL---RGHSSLVKGVAWDPI 178
GH + +L + P D ++L S S D+ + +WN+ T A+ GH V +D +
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 208
Query: 179 GSFIASQSDDKTVIIWRTS 197
G I S D ++ +WR +
Sbjct: 209 GEKIMSCGMDHSLKLWRIN 227
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 123 GHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL---RGHSSLVKGVAWDPI 178
GH + +L + P D ++L S S D+ + +WN+ T A+ GH V +D +
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 172
Query: 179 GSFIASQSDDKTVIIWRTS 197
G I S D ++ +WR +
Sbjct: 173 GEKIMSCGMDHSLKLWRIN 191
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 123 GHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL---RGHSSLVKGVAWDPI 178
GH + +L + P D ++L S S D+ + +WN+ T A+ GH V +D +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 179 GSFIASQSDDKTVIIWRTS 197
G I S D ++ +WR +
Sbjct: 172 GEKIMSCGMDHSLKLWRIN 190
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 37.4 bits (85), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 123 GHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL---RGHSSLVKGVAWDPI 178
GH + +L + P D ++L S S D+ + +WN+ T A+ GH V +D +
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 171
Query: 179 GSFIASQSDDKTVIIWRTS 197
G I S D ++ +WR +
Sbjct: 172 GEKIMSCGMDHSLKLWRIN 190
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 123 GHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL---RGHSSLVKGVAWDPI 178
GH + +L + P D ++L S S D+ + +WN+ T A+ GH V +D +
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL 167
Query: 179 GSFIASQSDDKTVIIWRTS 197
G I S D ++ +WR +
Sbjct: 168 GEKIMSCGMDHSLKLWRIN 186
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
+ H +++ L + P L S S D + IW++ G L GH + V +A G
Sbjct: 133 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 192
Query: 182 IASQSDDKTVIIWRTSDWSLAH 203
+ S S D T+ +W + H
Sbjct: 193 VLSASLDGTIRLWECGTGTTIH 214
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 36.6 bits (83), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181
+ H +++ L + P L S S D + IW++ G L GH + V +A G
Sbjct: 136 QAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRN 195
Query: 182 IASQSDDKTVIIWRTSDWSLAH 203
+ S S D T+ +W + H
Sbjct: 196 VLSASLDGTIRLWECGTGTTIH 217
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 38/89 (42%), Gaps = 1/89 (1%)
Query: 113 ENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172
+N KV T G DVV DD S S D I + + TG GH S V
Sbjct: 171 QNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYEGHESFVYC 230
Query: 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSL 201
+ P G I S +D+TV IW + SL
Sbjct: 231 IKLLPNGD-IVSCGEDRTVRIWSKENGSL 258
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 71/172 (41%), Gaps = 38/172 (22%)
Query: 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165
SGE P TL GH +V L S D ++ SGS D T +W G L+
Sbjct: 92 SGEDP-------LYTLIGHQGNVCSL--SFQDGVVISGSWDKTAKVWK--EGSLVYNLQA 140
Query: 166 HSSLVKGVAWDP-IGSF----IASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220
H++ V WD + SF + S DKT+ +W+ +D + + H + R
Sbjct: 141 HNASV----WDAKVVSFSENKFLTASADKTIKLWQ-NDKVIKTFSGIH------NDVVRH 189
Query: 221 LGWSPCGHFITTTH-GFQK--PRHSAPVLERGEWAATFDFLGHNAPIIVVKF 269
L GHFI+ ++ G K H+ VL E GH + + +K
Sbjct: 190 LAVVDDGHFISCSNDGLIKLVDXHTGDVLRTYE--------GHESFVYCIKL 233
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 111 DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH--SS 168
D+ N + +GHT ++ S D + L +G LDNT+ W++ G L+ H +S
Sbjct: 169 DLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHDFTS 225
Query: 169 LVKGVAWDPIGSFIA 183
+ + + P G ++A
Sbjct: 226 QIFSLGYCPTGEWLA 240
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 309 IAIGSQDRTITVWTTASPRPLFVAKHFFTQS---VVDLSWSPDGYSLFACSLDGTVANFH 365
+ +G + T+++W A+P P A+ T S L+ SPD F+C DG +A +
Sbjct: 112 LIVGGEASTLSIWDLAAPTPRIKAE--LTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169
Query: 366 FEVKEL 371
+ L
Sbjct: 170 LHNQTL 175
>pdb|2XDQ|A Chain A, Dark Operative Protochlorophyllide Oxidoreductase (Chln-
Chlb)2 Complex
Length = 460
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 211 KSLGSTFFRRLGWSPCGHFITTTHG---FQKPRHSAPVLERGEWAATFD 256
+ + +FF +G CG+F+ G F +PR++ LE G+ +A +
Sbjct: 32 QKIEDSFFLVIGTKTCGYFLQNAMGVMIFAEPRYAMAELEEGDISAQLN 80
>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
pdb|3VU4|B Chain B, Crystal Structure Of Kluyvelomyces Marxianus Hsv2
Length = 355
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 57/137 (41%), Gaps = 21/137 (15%)
Query: 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQR--LL---ATLRDHFGSVNCVRWAKHG 78
G L ++ ++ I ++S G D+ Q+ +L ++ H + VR +
Sbjct: 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS 207
Query: 79 RYIASGSDD-QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137
+A+ S D +I + + + G EF G ADVVD+ WS D
Sbjct: 208 DMVATCSQDGTIIRVFKTEDGVLVREFRRGLD---------------RADVVDMKWSTDG 252
Query: 138 SILASGSLDNTIHIWNM 154
S LA S T+H++ +
Sbjct: 253 SKLAVVSDKWTLHVFEI 269
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 8/73 (10%)
Query: 89 VILIHEKKPGSGTTEFGSGEPPDIENWKV------AMTL-RGHTADVVDLNWS-PDDSIL 140
V+ H K T GS P I W + TL +GH ++ L+W D+ +L
Sbjct: 219 VVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLL 278
Query: 141 ASGSLDNTIHIWN 153
S DNT+ +WN
Sbjct: 279 LSSGRDNTVLLWN 291
>pdb|4B6I|A Chain A, Crystal Structure Rap2b (Sma2266) From Serratia Marcescens
pdb|4B6I|B Chain B, Crystal Structure Rap2b (Sma2266) From Serratia Marcescens
pdb|4B6I|C Chain C, Crystal Structure Rap2b (Sma2266) From Serratia Marcescens
pdb|4B6I|D Chain D, Crystal Structure Rap2b (Sma2266) From Serratia Marcescens
Length = 102
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 544 VGRSSDVKERSGVTARATITESLVIEKVPASAAGDGNVGVEQSGNVKASGSVAATTTTL 602
+G+S+D ER+ A + + L + K+P A G EQ N + GSV T TL
Sbjct: 25 IGKSTD-SERTKQDAFRSASAYLELSKLPMDAFEQGEKLAEQYANKNSQGSVQGTYHTL 82
>pdb|1UGN|A Chain A, Crystal Structure Of Lir1.02, One Of The Alleles Of Lir1
Length = 198
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 543 TVGRSSDVKERSGVTARATITESLVIEKVPASAAGDGNVGVEQSGNVKASGSVAATTTTL 602
T GRS V A I +L + P +G GNV ++ V G +
Sbjct: 81 TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSG-GNVTLQCDSQVAFDGFILC----- 134
Query: 603 SIRVFDKKEGEDNVPVCLEARP 624
KEGED P CL ++P
Sbjct: 135 -------KEGEDEHPQCLNSQP 149
>pdb|1G0X|A Chain A, Crystal Structure Of The Ligand Binding Domain Of Lir-1
(Ilt2)
pdb|1P7Q|D Chain D, Crystal Structure Of Hla-A2 Bound To Lir-1, A Host And
Viral Mhc Receptor
pdb|1UFU|A Chain A, Crystal Structure Of Ligand Binding Domain Of
Immunoglobulin-Like Transcript 2 (Ilt2; Lir-1)
Length = 197
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 543 TVGRSSDVKERSGVTARATITESLVIEKVPASAAGDGNVGVEQSGNVKASGSVAATTTTL 602
T GRS V A I +L + P +G GNV ++ V G +
Sbjct: 80 TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSG-GNVTLQCDSQVAFDGFILC----- 133
Query: 603 SIRVFDKKEGEDNVPVCLEARP 624
KEGED P CL ++P
Sbjct: 134 -------KEGEDEHPQCLNSQP 148
>pdb|3D2U|D Chain D, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
pdb|3D2U|H Chain H, Structure Of Ul18, A Peptide-binding Viral Mhc Mimic,
Bound To A Host Inhibitory Receptor
Length = 198
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 13/82 (15%)
Query: 543 TVGRSSDVKERSGVTARATITESLVIEKVPASAAGDGNVGVEQSGNVKASGSVAATTTTL 602
T GRS V A I +L + P +G GNV ++ V G +
Sbjct: 81 TAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSG-GNVTLQCDSQVAFDGFILC----- 134
Query: 603 SIRVFDKKEGEDNVPVCLEARP 624
KEGED P CL ++P
Sbjct: 135 -------KEGEDEHPQCLNSQP 149
>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd
pdb|4AV9|A Chain A, Kluyveromyces Lactis Hsv2
pdb|4EXV|A Chain A, Structure Of Kluyveromyces Lactis Hsv2p
Length = 339
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 62 LRDHFGSVNCVRWAKHGRYIASGSDD-QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120
++ H V VR + G +A+ S D +I + + G EF G
Sbjct: 175 VKAHANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLD----------- 223
Query: 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152
++D+ WSPD S LA S T+H++
Sbjct: 224 ----RTSIIDMRWSPDGSKLAVVSDKWTLHVF 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,843,255
Number of Sequences: 62578
Number of extensions: 934264
Number of successful extensions: 3085
Number of sequences better than 100.0: 106
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 2066
Number of HSP's gapped (non-prelim): 583
length of query: 689
length of database: 14,973,337
effective HSP length: 105
effective length of query: 584
effective length of database: 8,402,647
effective search space: 4907145848
effective search space used: 4907145848
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)