Query 040062
Match_columns 689
No_of_seqs 840 out of 2983
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 04:44:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0973 Histone transcription 100.0 4.2E-58 9E-63 502.8 42.3 574 1-687 1-580 (942)
2 KOG0271 Notchless-like WD40 re 100.0 4.6E-48 9.9E-53 377.7 28.8 324 7-416 110-475 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 2.4E-41 5.3E-46 335.1 22.3 281 14-365 176-458 (459)
4 KOG0271 Notchless-like WD40 re 100.0 2.5E-40 5.5E-45 323.5 24.9 284 9-365 154-479 (480)
5 KOG0272 U4/U6 small nuclear ri 100.0 1.1E-38 2.3E-43 316.4 21.8 283 63-421 172-457 (459)
6 KOG0286 G-protein beta subunit 100.0 2.4E-36 5.2E-41 286.8 29.8 289 6-416 49-339 (343)
7 KOG0315 G-protein beta subunit 100.0 8.2E-36 1.8E-40 277.0 29.6 292 26-400 11-308 (311)
8 KOG0279 G protein beta subunit 100.0 2.8E-35 6.1E-40 278.1 33.7 294 5-367 8-313 (315)
9 KOG0296 Angio-associated migra 100.0 9.8E-36 2.1E-40 290.6 28.1 327 6-416 58-392 (399)
10 KOG0284 Polyadenylation factor 100.0 7.4E-37 1.6E-41 301.9 18.5 282 14-366 97-379 (464)
11 KOG0273 Beta-transducin family 100.0 3.1E-35 6.6E-40 295.3 27.3 340 7-416 173-517 (524)
12 KOG0279 G protein beta subunit 100.0 9.1E-35 2E-39 274.6 28.8 304 56-422 5-311 (315)
13 KOG0645 WD40 repeat protein [G 100.0 5.7E-34 1.2E-38 268.1 32.0 290 8-416 10-305 (312)
14 KOG0318 WD40 repeat stress pro 100.0 1.2E-33 2.6E-38 287.2 36.1 359 7-422 142-560 (603)
15 KOG0291 WD40-repeat-containing 100.0 5.7E-34 1.2E-38 300.2 34.8 342 5-417 257-607 (893)
16 KOG0273 Beta-transducin family 100.0 7.6E-34 1.7E-38 285.3 31.7 279 14-367 236-523 (524)
17 KOG0295 WD40 repeat-containing 100.0 4.7E-35 1E-39 285.6 21.6 298 7-416 103-400 (406)
18 KOG0263 Transcription initiati 100.0 3.7E-35 8.1E-40 312.6 22.7 254 13-369 378-651 (707)
19 KOG0285 Pleiotropic regulator 100.0 9.8E-34 2.1E-38 275.2 26.7 284 10-367 149-439 (460)
20 KOG0318 WD40 repeat stress pro 100.0 9.4E-33 2E-37 280.7 33.2 353 6-421 184-599 (603)
21 cd00200 WD40 WD40 domain, foun 100.0 6.4E-32 1.4E-36 276.0 37.2 286 7-365 4-289 (289)
22 KOG0266 WD40 repeat-containing 100.0 2.1E-32 4.5E-37 299.6 34.2 295 7-367 153-454 (456)
23 KOG0319 WD40-repeat-containing 100.0 7.4E-33 1.6E-37 291.8 26.6 337 7-424 99-619 (775)
24 KOG0286 G-protein beta subunit 100.0 5.5E-32 1.2E-36 257.2 29.3 245 14-365 98-343 (343)
25 KOG0265 U5 snRNP-specific prot 100.0 3.8E-32 8.2E-37 259.3 24.3 287 57-416 38-332 (338)
26 KOG0265 U5 snRNP-specific prot 100.0 1E-31 2.3E-36 256.3 26.5 283 9-364 44-335 (338)
27 KOG0282 mRNA splicing factor [ 100.0 3.6E-33 7.8E-38 281.7 16.8 291 6-365 208-503 (503)
28 KOG0291 WD40-repeat-containing 100.0 3.5E-30 7.6E-35 271.7 37.2 354 4-425 137-509 (893)
29 KOG0293 WD40 repeat-containing 100.0 1.1E-31 2.5E-36 265.2 24.3 292 8-367 220-513 (519)
30 KOG0263 Transcription initiati 100.0 7.4E-32 1.6E-36 287.6 24.0 172 6-206 445-616 (707)
31 KOG0276 Vesicle coat complex C 100.0 1.3E-31 2.9E-36 276.8 24.2 292 4-421 5-298 (794)
32 KOG0315 G-protein beta subunit 100.0 1.3E-30 2.8E-35 242.5 28.0 271 9-345 36-308 (311)
33 KOG0292 Vesicle coat complex C 100.0 2.2E-31 4.7E-36 284.4 24.7 306 14-416 10-316 (1202)
34 KOG0284 Polyadenylation factor 100.0 1.6E-32 3.4E-37 271.4 14.4 281 65-421 95-377 (464)
35 KOG0645 WD40 repeat protein [G 100.0 2.4E-30 5.2E-35 243.7 27.9 243 10-367 59-311 (312)
36 PLN00181 protein SPA1-RELATED; 100.0 2E-29 4.4E-34 296.0 41.3 292 8-366 479-792 (793)
37 KOG0319 WD40-repeat-containing 100.0 9.7E-31 2.1E-35 275.9 26.6 368 14-425 63-578 (775)
38 KOG0316 Conserved WD40 repeat- 100.0 3.3E-30 7.1E-35 237.9 26.1 281 10-365 15-297 (307)
39 cd00200 WD40 WD40 domain, foun 100.0 8.8E-30 1.9E-34 260.1 32.2 284 59-416 2-285 (289)
40 KOG0285 Pleiotropic regulator 100.0 6.1E-31 1.3E-35 255.8 20.8 292 55-416 140-433 (460)
41 KOG1009 Chromatin assembly com 100.0 4.3E-30 9.4E-35 254.4 27.1 353 1-372 1-377 (434)
42 KOG0306 WD40-repeat-containing 100.0 7.5E-30 1.6E-34 269.1 27.8 202 164-416 451-658 (888)
43 KOG0266 WD40 repeat-containing 100.0 1.6E-29 3.4E-34 276.8 31.3 287 59-416 151-448 (456)
44 KOG0278 Serine/threonine kinas 100.0 5.4E-31 1.2E-35 244.9 16.4 287 9-371 11-301 (334)
45 KOG0275 Conserved WD40 repeat- 100.0 1.7E-30 3.6E-35 249.4 17.8 287 14-416 214-503 (508)
46 PLN00181 protein SPA1-RELATED; 100.0 8.1E-29 1.8E-33 290.9 34.7 325 34-422 457-791 (793)
47 KOG0293 WD40 repeat-containing 100.0 1.8E-29 4E-34 249.7 23.4 294 56-423 214-512 (519)
48 KOG0295 WD40 repeat-containing 100.0 1.9E-29 4.2E-34 246.4 21.9 244 9-366 147-405 (406)
49 KOG0281 Beta-TrCP (transducin 100.0 3E-30 6.6E-35 249.8 15.3 271 14-369 198-479 (499)
50 KOG0283 WD40 repeat-containing 100.0 4.6E-29 1E-33 268.5 25.6 263 10-369 265-578 (712)
51 KOG0313 Microtubule binding pr 100.0 1.8E-28 3.9E-33 240.9 26.0 283 10-366 103-417 (423)
52 KOG0282 mRNA splicing factor [ 100.0 1.4E-29 2.9E-34 255.9 17.8 289 55-416 203-499 (503)
53 KOG1407 WD40 repeat protein [F 100.0 1.2E-28 2.6E-33 231.0 21.7 281 60-415 14-295 (313)
54 KOG0296 Angio-associated migra 100.0 1.1E-27 2.3E-32 234.5 28.2 290 9-367 103-398 (399)
55 KOG0306 WD40-repeat-containing 100.0 1.1E-27 2.3E-32 253.0 28.6 289 6-370 367-667 (888)
56 KOG0643 Translation initiation 100.0 2.3E-27 4.9E-32 223.1 27.6 292 9-417 7-312 (327)
57 KOG0316 Conserved WD40 repeat- 100.0 6.9E-28 1.5E-32 222.6 23.4 283 56-416 7-294 (307)
58 KOG0640 mRNA cleavage stimulat 100.0 4.1E-28 8.9E-33 232.0 21.9 302 8-366 108-425 (430)
59 KOG1446 Histone H3 (Lys4) meth 100.0 2.5E-26 5.4E-31 222.0 33.5 290 8-369 9-305 (311)
60 KOG0292 Vesicle coat complex C 100.0 1.4E-27 3E-32 255.5 25.1 254 1-368 40-322 (1202)
61 KOG0641 WD40 repeat protein [G 100.0 9.8E-26 2.1E-30 206.8 32.9 304 14-367 33-349 (350)
62 KOG0299 U3 snoRNP-associated p 100.0 1.3E-27 2.9E-32 240.3 22.1 293 8-416 138-450 (479)
63 KOG0268 Sof1-like rRNA process 100.0 6.8E-28 1.5E-32 235.3 17.9 311 9-399 63-381 (433)
64 KOG0281 Beta-TrCP (transducin 100.0 3.2E-28 7E-33 235.8 15.3 277 65-422 196-475 (499)
65 PTZ00421 coronin; Provisional 100.0 6E-26 1.3E-30 247.8 34.8 285 15-348 22-314 (493)
66 KOG1407 WD40 repeat protein [F 100.0 4.9E-26 1.1E-30 213.6 27.7 286 7-366 15-310 (313)
67 KOG0310 Conserved WD40 repeat- 100.0 9E-27 1.9E-31 236.1 24.3 279 14-368 27-310 (487)
68 KOG0973 Histone transcription 100.0 2.4E-25 5.1E-30 245.7 36.0 260 9-328 66-359 (942)
69 KOG0294 WD40 repeat-containing 100.0 7.2E-26 1.6E-30 217.8 27.6 276 27-369 3-283 (362)
70 KOG0288 WD40 repeat protein Ti 100.0 1.4E-27 3E-32 236.9 16.2 281 10-364 173-458 (459)
71 KOG0277 Peroxisomal targeting 100.0 1.1E-26 2.4E-31 217.1 21.2 284 16-365 11-307 (311)
72 KOG0274 Cdc4 and related F-box 100.0 5.2E-26 1.1E-30 248.5 30.2 283 11-375 206-490 (537)
73 KOG0276 Vesicle coat complex C 100.0 2E-26 4.4E-31 238.6 24.7 223 14-273 56-281 (794)
74 KOG0289 mRNA splicing factor [ 99.9 3.8E-26 8.3E-31 227.8 25.5 282 15-422 221-504 (506)
75 KOG0305 Anaphase promoting com 99.9 2.2E-26 4.8E-31 242.3 23.1 274 16-422 180-459 (484)
76 KOG0305 Anaphase promoting com 99.9 4.1E-26 8.9E-31 240.3 24.3 243 14-327 218-464 (484)
77 KOG0283 WD40 repeat-containing 99.9 1.9E-26 4.2E-31 248.4 22.2 268 57-425 257-577 (712)
78 KOG0300 WD40 repeat-containing 99.9 4.1E-26 8.9E-31 218.8 21.4 303 6-416 142-470 (481)
79 PTZ00420 coronin; Provisional 99.9 8.9E-25 1.9E-29 239.6 35.0 264 31-349 50-318 (568)
80 KOG1332 Vesicle coat complex C 99.9 2.4E-26 5.2E-31 213.7 18.4 255 10-367 9-286 (299)
81 KOG1446 Histone H3 (Lys4) meth 99.9 1.2E-24 2.6E-29 210.4 29.3 282 57-412 5-295 (311)
82 KOG0639 Transducin-like enhanc 99.9 6.8E-26 1.5E-30 229.1 21.3 291 4-366 411-703 (705)
83 KOG1408 WD40 repeat protein [F 99.9 5.8E-25 1.3E-29 230.4 28.4 343 16-424 327-713 (1080)
84 KOG0772 Uncharacterized conser 99.9 1.2E-25 2.6E-30 228.4 22.4 306 10-365 164-485 (641)
85 KOG1539 WD repeat protein [Gen 99.9 1.1E-24 2.3E-29 233.1 30.7 364 14-425 203-649 (910)
86 KOG0772 Uncharacterized conser 99.9 1.5E-25 3.3E-30 227.6 22.8 297 58-416 159-481 (641)
87 KOG0647 mRNA export protein (c 99.9 5.8E-25 1.3E-29 210.4 25.2 272 14-355 28-311 (347)
88 KOG1036 Mitotic spindle checkp 99.9 1.5E-24 3.3E-29 208.5 25.8 270 14-357 14-294 (323)
89 KOG2096 WD40 repeat protein [G 99.9 1.4E-24 3E-29 208.8 25.1 300 9-412 83-393 (420)
90 KOG0278 Serine/threonine kinas 99.9 5.4E-26 1.2E-30 211.7 14.3 285 59-422 7-295 (334)
91 KOG0640 mRNA cleavage stimulat 99.9 1.2E-25 2.5E-30 215.3 16.5 235 58-376 104-344 (430)
92 KOG0294 WD40 repeat-containing 99.9 4.2E-24 9E-29 205.7 26.4 242 9-326 40-283 (362)
93 PTZ00421 coronin; Provisional 99.9 1.2E-23 2.7E-28 229.7 33.6 280 65-403 19-314 (493)
94 KOG0288 WD40 repeat protein Ti 99.9 6.6E-26 1.4E-30 225.0 14.0 287 57-416 166-455 (459)
95 KOG0264 Nucleosome remodeling 99.9 1.2E-24 2.6E-29 219.4 23.2 268 6-368 118-405 (422)
96 KOG2445 Nuclear pore complex c 99.9 1.4E-23 3.1E-28 201.4 26.5 270 4-367 5-318 (361)
97 KOG0643 Translation initiation 99.9 4.6E-24 1E-28 200.9 22.0 254 8-324 48-317 (327)
98 KOG0277 Peroxisomal targeting 99.9 2.4E-24 5.3E-29 201.4 19.8 242 14-323 61-308 (311)
99 PTZ00420 coronin; Provisional 99.9 6.6E-23 1.4E-27 224.9 33.4 253 84-404 50-318 (568)
100 KOG1274 WD40 repeat protein [G 99.9 3.1E-23 6.7E-28 224.4 30.0 284 9-364 10-297 (933)
101 KOG0289 mRNA splicing factor [ 99.9 1.3E-23 2.9E-28 209.7 24.6 246 7-323 256-505 (506)
102 KOG0310 Conserved WD40 repeat- 99.9 2E-24 4.3E-29 219.1 18.8 280 65-419 25-306 (487)
103 KOG0313 Microtubule binding pr 99.9 1.4E-23 3.1E-28 206.5 23.3 281 56-416 96-412 (423)
104 KOG0301 Phospholipase A2-activ 99.9 2.6E-23 5.7E-28 218.6 26.2 283 5-370 7-291 (745)
105 KOG0299 U3 snoRNP-associated p 99.9 9.9E-24 2.1E-28 212.5 21.9 255 5-365 195-454 (479)
106 KOG0308 Conserved WD40 repeat- 99.9 2.3E-24 5.1E-29 224.8 17.8 286 18-368 29-328 (735)
107 KOG0275 Conserved WD40 repeat- 99.9 1.5E-24 3.2E-29 208.6 15.1 246 7-365 258-507 (508)
108 KOG1539 WD repeat protein [Gen 99.9 1.3E-22 2.8E-27 217.3 31.4 368 15-425 161-607 (910)
109 KOG0268 Sof1-like rRNA process 99.9 1.3E-24 2.9E-29 212.4 13.3 286 57-422 57-343 (433)
110 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.9E-22 1.9E-26 204.6 35.2 275 25-375 1-287 (300)
111 KOG0274 Cdc4 and related F-box 99.9 9.2E-23 2E-27 223.1 27.3 249 4-333 241-491 (537)
112 KOG2106 Uncharacterized conser 99.9 4.8E-22 1E-26 201.9 30.2 331 14-422 201-579 (626)
113 KOG1063 RNA polymerase II elon 99.9 2.2E-22 4.7E-27 211.6 28.1 381 17-424 149-648 (764)
114 KOG2048 WD40 repeat protein [G 99.9 6.8E-22 1.5E-26 207.8 31.7 300 1-368 13-320 (691)
115 KOG0269 WD40 repeat-containing 99.9 1.1E-23 2.5E-28 223.7 18.0 296 8-421 34-339 (839)
116 KOG2055 WD40 repeat protein [G 99.9 1.2E-22 2.6E-27 204.6 24.1 286 15-367 215-512 (514)
117 KOG0647 mRNA export protein (c 99.9 1.1E-22 2.4E-27 194.9 20.9 272 64-411 25-312 (347)
118 KOG0641 WD40 repeat protein [G 99.9 1.5E-21 3.2E-26 179.5 25.9 251 11-324 87-349 (350)
119 KOG2445 Nuclear pore complex c 99.9 5.1E-22 1.1E-26 190.7 23.3 268 63-422 10-316 (361)
120 KOG0646 WD40 repeat protein [G 99.9 3.9E-22 8.4E-27 201.5 22.3 246 14-349 82-331 (476)
121 KOG1063 RNA polymerase II elon 99.9 9.9E-22 2.1E-26 206.7 26.0 347 9-416 264-693 (764)
122 KOG2106 Uncharacterized conser 99.9 3.4E-21 7.4E-26 195.7 28.5 334 11-416 244-620 (626)
123 KOG0267 Microtubule severing p 99.9 8.2E-24 1.8E-28 223.0 9.3 239 6-359 22-260 (825)
124 KOG0308 Conserved WD40 repeat- 99.9 2.9E-22 6.2E-27 209.3 20.6 311 10-384 71-410 (735)
125 KOG0264 Nucleosome remodeling 99.9 2.2E-22 4.8E-27 203.0 18.8 265 63-416 121-398 (422)
126 KOG0269 WD40 repeat-containing 99.9 6.1E-23 1.3E-27 218.2 15.1 246 15-368 89-341 (839)
127 KOG1408 WD40 repeat protein [F 99.9 2.7E-22 5.9E-27 210.5 19.6 245 14-368 460-714 (1080)
128 KOG4283 Transcription-coupled 99.9 4.1E-21 9E-26 183.2 25.6 301 11-416 42-359 (397)
129 KOG1332 Vesicle coat complex C 99.9 2.7E-22 5.9E-27 186.8 17.0 264 62-417 7-281 (299)
130 KOG0267 Microtubule severing p 99.9 1.5E-23 3.1E-28 221.2 8.6 260 23-415 2-261 (825)
131 KOG2048 WD40 repeat protein [G 99.9 2.6E-20 5.5E-25 196.0 32.7 381 5-423 61-504 (691)
132 KOG1273 WD40 repeat protein [G 99.9 3.3E-21 7.2E-26 185.5 23.0 240 16-273 26-305 (405)
133 KOG1036 Mitotic spindle checkp 99.9 4.8E-21 1E-25 184.5 23.3 268 65-412 12-294 (323)
134 KOG0646 WD40 repeat protein [G 99.9 2.2E-21 4.8E-26 196.0 21.3 248 27-402 52-329 (476)
135 KOG0650 WD40 repeat nucleolar 99.9 6.7E-21 1.4E-25 197.2 24.5 299 7-364 395-732 (733)
136 KOG0300 WD40 repeat-containing 99.9 3.2E-21 6.9E-26 185.4 19.9 257 7-368 185-477 (481)
137 KOG0321 WD40 repeat-containing 99.9 5.5E-21 1.2E-25 199.4 23.2 298 17-369 53-393 (720)
138 KOG0302 Ribosome Assembly prot 99.9 6.1E-21 1.3E-25 187.8 21.2 256 9-364 148-435 (440)
139 KOG0301 Phospholipase A2-activ 99.9 9.8E-21 2.1E-25 199.4 22.6 283 56-424 4-288 (745)
140 KOG2055 WD40 repeat protein [G 99.9 2.1E-20 4.6E-25 188.4 21.9 280 66-416 213-506 (514)
141 KOG1273 WD40 repeat protein [G 99.9 2.3E-20 5.1E-25 179.7 20.7 277 69-416 26-316 (405)
142 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.6E-19 1.9E-23 182.1 34.3 263 15-347 32-300 (300)
143 KOG4328 WD40 protein [Function 99.9 3.5E-20 7.5E-25 186.8 22.3 301 10-366 184-494 (498)
144 KOG1274 WD40 repeat protein [G 99.9 9.4E-20 2E-24 197.7 26.5 275 64-416 11-294 (933)
145 KOG0639 Transducin-like enhanc 99.9 1.3E-20 2.8E-25 191.1 17.0 238 14-323 466-703 (705)
146 KOG0650 WD40 repeat nucleolar 99.8 1.6E-19 3.4E-24 187.2 22.5 287 57-416 391-729 (733)
147 KOG1538 Uncharacterized conser 99.8 1.3E-19 2.8E-24 189.2 21.3 277 15-368 14-294 (1081)
148 KOG1034 Transcriptional repres 99.8 7.4E-19 1.6E-23 170.5 23.5 294 10-367 36-383 (385)
149 KOG4378 Nuclear protein COP1 [ 99.8 2.3E-19 4.9E-24 182.0 20.0 292 35-404 12-305 (673)
150 KOG0270 WD40 repeat-containing 99.8 4.8E-19 1E-23 178.2 22.0 300 16-371 128-453 (463)
151 KOG0307 Vesicle coat complex C 99.8 4.1E-20 8.9E-25 205.3 14.3 301 16-370 9-330 (1049)
152 KOG2096 WD40 repeat protein [G 99.8 2.4E-18 5.2E-23 166.1 24.2 256 16-365 135-400 (420)
153 KOG0321 WD40 repeat-containing 99.8 6.9E-19 1.5E-23 183.9 21.1 269 6-326 94-393 (720)
154 KOG0302 Ribosome Assembly prot 99.8 1.3E-18 2.8E-23 171.6 19.8 229 56-369 141-380 (440)
155 KOG1445 Tumor-specific antigen 99.8 1E-18 2.2E-23 181.6 20.0 197 9-233 76-280 (1012)
156 KOG2919 Guanine nucleotide-bin 99.8 4.7E-18 1E-22 164.5 22.4 293 68-416 51-364 (406)
157 KOG1963 WD40 repeat protein [G 99.8 1.2E-17 2.5E-22 181.4 28.2 305 10-372 203-544 (792)
158 COG2319 FOG: WD40 repeat [Gene 99.8 3.8E-16 8.2E-21 168.2 38.6 321 8-416 61-394 (466)
159 KOG1009 Chromatin assembly com 99.8 1.8E-17 3.9E-22 165.2 25.2 303 66-416 13-366 (434)
160 KOG0642 Cell-cycle nuclear pro 99.8 7.7E-19 1.7E-23 181.6 16.0 273 9-371 291-565 (577)
161 KOG4283 Transcription-coupled 99.8 7.7E-18 1.7E-22 161.0 21.5 252 5-324 94-365 (397)
162 KOG1188 WD40 repeat protein [G 99.8 5.9E-18 1.3E-22 165.2 20.3 297 15-366 23-345 (376)
163 KOG2919 Guanine nucleotide-bin 99.8 2E-17 4.4E-22 160.1 23.6 292 16-367 52-367 (406)
164 KOG0644 Uncharacterized conser 99.8 1.5E-19 3.2E-24 193.4 9.7 281 7-370 185-471 (1113)
165 KOG0303 Actin-binding protein 99.8 2.4E-17 5.2E-22 163.5 24.4 228 57-333 72-303 (472)
166 KOG1007 WD repeat protein TSSC 99.8 7E-18 1.5E-22 160.9 19.9 264 4-367 55-361 (370)
167 KOG4227 WD40 repeat protein [G 99.8 1.9E-17 4E-22 163.6 22.3 305 5-366 49-386 (609)
168 KOG1007 WD repeat protein TSSC 99.8 1.3E-17 2.9E-22 159.0 20.1 292 24-416 25-355 (370)
169 KOG4378 Nuclear protein COP1 [ 99.8 4.2E-18 9E-23 172.9 17.4 221 15-349 81-305 (673)
170 KOG1538 Uncharacterized conser 99.8 5.7E-18 1.2E-22 177.0 18.8 274 68-418 14-289 (1081)
171 KOG0270 WD40 repeat-containing 99.8 1.1E-17 2.3E-22 168.6 18.2 267 5-330 161-455 (463)
172 COG2319 FOG: WD40 repeat [Gene 99.8 1.4E-15 3.1E-20 163.7 36.5 315 15-416 111-436 (466)
173 KOG0649 WD40 repeat protein [G 99.8 9.4E-17 2E-21 149.8 23.0 294 15-364 12-313 (325)
174 KOG0771 Prolactin regulatory e 99.8 1.1E-16 2.4E-21 160.9 23.6 202 129-368 148-355 (398)
175 KOG0307 Vesicle coat complex C 99.8 1E-17 2.3E-22 186.4 17.1 252 14-327 65-330 (1049)
176 KOG1523 Actin-related protein 99.8 1.3E-16 2.9E-21 154.6 22.4 200 14-235 11-226 (361)
177 KOG4328 WD40 protein [Function 99.7 6.8E-17 1.5E-21 163.2 19.4 294 56-416 176-489 (498)
178 KOG0644 Uncharacterized conser 99.7 2E-18 4.4E-23 184.8 8.6 282 56-416 180-462 (1113)
179 PRK11028 6-phosphogluconolacto 99.7 4.9E-15 1.1E-19 156.7 34.5 278 29-367 6-304 (330)
180 KOG0290 Conserved WD40 repeat- 99.7 5.7E-16 1.2E-20 148.2 22.5 291 14-363 45-361 (364)
181 KOG1034 Transcriptional repres 99.7 1.4E-16 3E-21 154.8 17.3 249 11-324 88-383 (385)
182 KOG0303 Actin-binding protein 99.7 2.9E-16 6.3E-21 155.9 19.6 205 4-235 73-283 (472)
183 KOG0322 G-protein beta subunit 99.7 1.1E-16 2.4E-21 151.2 15.5 295 4-366 4-322 (323)
184 KOG1517 Guanine nucleotide bin 99.7 1.1E-15 2.3E-20 168.0 25.0 299 15-419 1066-1378(1387)
185 KOG1524 WD40 repeat-containing 99.7 1.1E-16 2.3E-21 164.2 16.2 267 64-416 12-280 (737)
186 KOG1963 WD40 repeat protein [G 99.7 3.6E-15 7.8E-20 162.3 25.7 337 17-416 164-532 (792)
187 KOG0642 Cell-cycle nuclear pro 99.7 1.2E-16 2.7E-21 165.4 13.5 286 26-416 243-555 (577)
188 KOG1587 Cytoplasmic dynein int 99.7 4.4E-15 9.6E-20 161.6 26.2 275 35-368 222-517 (555)
189 KOG1445 Tumor-specific antigen 99.7 9E-16 1.9E-20 160.0 19.7 277 21-348 587-870 (1012)
190 KOG2139 WD40 repeat protein [G 99.7 1.4E-14 3.1E-19 142.5 26.9 293 15-367 100-431 (445)
191 KOG1334 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 160.1 14.7 302 8-371 138-470 (559)
192 KOG2110 Uncharacterized conser 99.7 3.9E-14 8.4E-19 140.2 27.1 243 66-370 5-251 (391)
193 KOG1587 Cytoplasmic dynein int 99.7 7.7E-15 1.7E-19 159.8 24.4 274 88-425 222-517 (555)
194 KOG1524 WD40 repeat-containing 99.7 1.9E-15 4.1E-20 155.1 17.3 209 26-365 76-284 (737)
195 PRK11028 6-phosphogluconolacto 99.7 1.6E-13 3.4E-18 145.2 32.2 252 14-324 35-304 (330)
196 KOG4227 WD40 repeat protein [G 99.6 7.1E-15 1.5E-19 145.5 17.9 309 59-422 49-385 (609)
197 PRK01742 tolB translocation pr 99.6 1.9E-14 4.2E-19 157.2 23.3 235 34-403 183-426 (429)
198 KOG1240 Protein kinase contain 99.6 9.4E-14 2E-18 155.3 25.8 321 9-365 1045-1431(1431)
199 KOG1188 WD40 repeat protein [G 99.6 1.1E-14 2.4E-19 142.6 16.1 247 138-422 41-344 (376)
200 KOG0322 G-protein beta subunit 99.6 8.7E-15 1.9E-19 138.4 14.6 288 57-416 5-317 (323)
201 KOG1310 WD40 repeat protein [G 99.6 6.5E-15 1.4E-19 151.6 14.4 224 58-372 42-308 (758)
202 KOG2110 Uncharacterized conser 99.6 9.9E-13 2.1E-17 130.4 27.9 184 14-235 47-238 (391)
203 KOG4497 Uncharacterized conser 99.6 2.4E-13 5.2E-18 132.3 22.9 348 18-416 13-426 (447)
204 PF02239 Cytochrom_D1: Cytochr 99.6 1.1E-12 2.4E-17 139.2 30.2 313 26-375 6-355 (369)
205 KOG1310 WD40 repeat protein [G 99.6 1.7E-14 3.6E-19 148.6 15.2 173 6-197 44-231 (758)
206 KOG0290 Conserved WD40 repeat- 99.6 8.4E-14 1.8E-18 133.5 18.4 211 4-235 89-356 (364)
207 KOG4497 Uncharacterized conser 99.6 1E-12 2.3E-17 127.9 25.7 290 15-363 50-428 (447)
208 KOG0771 Prolactin regulatory e 99.6 2.5E-14 5.5E-19 144.0 14.5 185 17-233 148-342 (398)
209 KOG2315 Predicted translation 99.6 4.7E-12 1E-16 131.9 30.6 318 14-371 35-394 (566)
210 PRK01742 tolB translocation pr 99.6 1.5E-13 3.1E-18 150.4 20.8 221 8-273 199-427 (429)
211 PRK03629 tolB translocation pr 99.6 1.9E-12 4.1E-17 141.3 29.2 237 35-402 179-427 (429)
212 KOG1517 Guanine nucleotide bin 99.5 4.2E-13 9.2E-18 147.9 21.0 252 14-370 1110-1384(1387)
213 KOG2111 Uncharacterized conser 99.5 4.7E-12 1E-16 123.4 25.7 291 69-421 8-321 (346)
214 KOG2394 WD40 protein DMR-N9 [G 99.5 4.1E-13 8.9E-18 138.5 19.1 189 23-225 183-384 (636)
215 KOG0649 WD40 repeat protein [G 99.5 8.6E-13 1.9E-17 123.6 18.4 225 68-404 12-258 (325)
216 KOG2394 WD40 protein DMR-N9 [G 99.5 1.5E-13 3.2E-18 141.8 14.5 147 14-177 220-384 (636)
217 PRK03629 tolB translocation pr 99.5 3.3E-12 7.2E-17 139.4 25.8 218 14-272 199-428 (429)
218 PRK04922 tolB translocation pr 99.5 3.2E-12 6.8E-17 140.1 25.2 135 35-200 184-327 (433)
219 KOG1334 WD40 repeat protein [G 99.5 4.3E-13 9.3E-18 137.0 16.6 300 56-422 132-464 (559)
220 KOG2314 Translation initiation 99.5 5.9E-12 1.3E-16 130.5 25.0 321 16-416 213-561 (698)
221 KOG1523 Actin-related protein 99.5 3.3E-12 7.1E-17 124.4 21.0 246 64-360 8-271 (361)
222 PRK05137 tolB translocation pr 99.5 1.1E-11 2.5E-16 135.9 28.1 236 35-347 182-432 (435)
223 KOG2321 WD40 repeat protein [G 99.5 3.6E-12 7.9E-17 132.5 22.3 286 9-417 48-338 (703)
224 KOG1240 Protein kinase contain 99.5 2E-12 4.3E-17 145.0 21.6 269 55-416 1037-1328(1431)
225 KOG1272 WD40-repeat-containing 99.5 1E-13 2.2E-18 140.7 10.3 272 16-416 132-403 (545)
226 PRK02889 tolB translocation pr 99.5 2.7E-12 5.9E-17 140.2 22.0 224 9-272 192-425 (427)
227 COG5354 Uncharacterized protei 99.5 1.7E-11 3.7E-16 126.2 25.4 339 14-414 33-421 (561)
228 PRK02889 tolB translocation pr 99.5 1E-11 2.2E-16 135.7 25.6 121 57-196 186-313 (427)
229 PF08662 eIF2A: Eukaryotic tra 99.5 6E-12 1.3E-16 121.5 20.9 156 17-205 9-186 (194)
230 PRK04922 tolB translocation pr 99.5 6.9E-12 1.5E-16 137.4 24.0 221 9-271 200-432 (433)
231 PRK05137 tolB translocation pr 99.5 1.5E-11 3.2E-16 135.0 25.8 188 9-236 198-397 (435)
232 PF10282 Lactonase: Lactonase, 99.4 1.2E-09 2.7E-14 115.9 37.2 286 28-371 2-328 (345)
233 KOG2139 WD40 repeat protein [G 99.4 1.2E-11 2.5E-16 122.3 19.0 178 67-275 99-294 (445)
234 PF10282 Lactonase: Lactonase, 99.4 1.1E-09 2.4E-14 116.2 35.2 275 15-345 38-345 (345)
235 KOG1272 WD40-repeat-containing 99.4 2.5E-13 5.3E-18 137.9 6.7 216 14-273 171-391 (545)
236 KOG1354 Serine/threonine prote 99.4 5.4E-11 1.2E-15 116.9 22.1 223 14-248 26-300 (433)
237 TIGR02800 propeller_TolB tol-p 99.4 1.7E-10 3.7E-15 126.2 27.7 134 35-199 170-312 (417)
238 KOG3881 Uncharacterized conser 99.4 4.4E-11 9.6E-16 119.6 20.3 275 65-404 54-343 (412)
239 PF08662 eIF2A: Eukaryotic tra 99.4 5.6E-11 1.2E-15 114.7 19.7 152 128-370 8-182 (194)
240 KOG2111 Uncharacterized conser 99.4 4.6E-11 9.9E-16 116.6 18.6 238 128-424 8-256 (346)
241 TIGR02800 propeller_TolB tol-p 99.3 1.5E-10 3.2E-15 126.7 24.5 186 14-238 190-387 (417)
242 KOG2041 WD40 repeat protein [G 99.3 1.2E-10 2.5E-15 123.9 21.7 307 15-367 16-337 (1189)
243 KOG0974 WD-repeat protein WDR6 99.3 3.1E-10 6.7E-15 126.3 24.0 150 19-198 139-289 (967)
244 PF02239 Cytochrom_D1: Cytochr 99.3 2.1E-10 4.5E-15 121.8 21.6 299 82-415 10-338 (369)
245 TIGR02658 TTQ_MADH_Hv methylam 99.3 6.7E-09 1.4E-13 108.0 31.9 268 35-375 27-338 (352)
246 COG4946 Uncharacterized protei 99.3 5.2E-09 1.1E-13 107.0 29.9 172 24-234 331-507 (668)
247 PRK04792 tolB translocation pr 99.3 1E-09 2.3E-14 120.4 27.3 123 60-201 211-342 (448)
248 PRK00178 tolB translocation pr 99.3 7.9E-10 1.7E-14 121.4 25.7 222 9-272 195-428 (430)
249 PF04762 IKI3: IKI3 family; I 99.3 3.8E-09 8.3E-14 124.0 32.2 376 13-413 75-507 (928)
250 COG2706 3-carboxymuconate cycl 99.3 1.3E-08 2.8E-13 101.9 31.1 205 10-236 37-264 (346)
251 PRK00178 tolB translocation pr 99.3 1.8E-09 3.9E-14 118.6 28.0 175 36-249 180-363 (430)
252 PRK04792 tolB translocation pr 99.3 8.5E-10 1.8E-14 121.0 23.8 217 14-271 218-446 (448)
253 KOG3881 Uncharacterized conser 99.2 3E-10 6.5E-15 113.7 17.5 183 5-206 141-329 (412)
254 KOG1409 Uncharacterized conser 99.2 1.9E-10 4.1E-15 113.3 15.3 179 14-199 69-272 (404)
255 PRK01029 tolB translocation pr 99.2 2.8E-09 6.2E-14 116.0 24.5 224 14-272 185-425 (428)
256 COG2706 3-carboxymuconate cycl 99.2 8.5E-08 1.8E-12 96.1 32.5 284 34-368 15-322 (346)
257 PRK01029 tolB translocation pr 99.2 5.2E-09 1.1E-13 114.0 26.4 229 60-349 178-426 (428)
258 KOG0974 WD-repeat protein WDR6 99.2 4E-10 8.7E-15 125.5 17.4 185 15-235 89-278 (967)
259 KOG4547 WD40 repeat-containing 99.2 4.9E-09 1.1E-13 110.5 24.7 178 22-235 2-209 (541)
260 KOG2314 Translation initiation 99.2 6.7E-09 1.5E-13 108.2 24.8 289 9-371 247-577 (698)
261 PF04762 IKI3: IKI3 family; I 99.2 2.2E-08 4.8E-13 117.6 32.2 340 15-419 23-453 (928)
262 KOG1354 Serine/threonine prote 99.2 6.6E-10 1.4E-14 109.4 15.6 261 65-416 24-353 (433)
263 KOG1409 Uncharacterized conser 99.2 1.3E-09 2.7E-14 107.6 17.1 259 55-374 13-277 (404)
264 KOG1064 RAVE (regulator of V-A 99.2 2.2E-10 4.8E-15 132.8 13.0 162 14-206 2209-2375(2439)
265 KOG2041 WD40 repeat protein [G 99.2 8.2E-10 1.8E-14 117.6 16.2 306 65-416 13-331 (1189)
266 KOG0280 Uncharacterized conser 99.1 3.2E-09 6.8E-14 102.8 18.2 288 15-415 16-325 (339)
267 KOG1912 WD40 repeat protein [G 99.1 3.1E-09 6.7E-14 114.5 18.2 151 16-196 18-185 (1062)
268 KOG4547 WD40 repeat-containing 99.1 2.9E-08 6.2E-13 104.9 23.4 171 76-272 3-195 (541)
269 TIGR02658 TTQ_MADH_Hv methylam 99.0 1.6E-07 3.5E-12 97.7 26.8 253 88-416 27-324 (352)
270 TIGR03300 assembly_YfgL outer 99.0 1.3E-07 2.9E-12 101.9 27.0 274 24-375 64-346 (377)
271 KOG1064 RAVE (regulator of V-A 99.0 1.7E-09 3.6E-14 125.7 12.4 202 63-378 2205-2409(2439)
272 PLN02919 haloacid dehalogenase 99.0 3.3E-07 7.3E-12 109.9 32.5 275 17-371 571-892 (1057)
273 KOG0280 Uncharacterized conser 99.0 6.2E-08 1.3E-12 94.0 20.5 224 146-416 45-279 (339)
274 KOG2321 WD40 repeat protein [G 99.0 9.2E-09 2E-13 107.7 15.2 179 26-235 147-333 (703)
275 KOG0309 Conserved WD40 repeat- 99.0 4.7E-09 1E-13 112.4 13.1 268 4-325 57-340 (1081)
276 KOG4532 WD40-like repeat conta 99.0 1.5E-07 3.2E-12 90.2 21.6 243 18-368 72-332 (344)
277 KOG4190 Uncharacterized conser 98.9 7.3E-09 1.6E-13 107.5 12.4 183 4-206 727-915 (1034)
278 COG5354 Uncharacterized protei 98.9 2.3E-07 4.9E-12 96.4 22.4 273 65-416 31-339 (561)
279 PRK04043 tolB translocation pr 98.9 5E-07 1.1E-11 97.9 25.7 181 15-236 189-388 (419)
280 PF08450 SGL: SMP-30/Gluconola 98.8 1.2E-05 2.6E-10 81.1 31.1 221 71-356 4-244 (246)
281 KOG3914 WD repeat protein WDR4 98.8 5E-08 1.1E-12 98.6 13.1 166 15-207 64-233 (390)
282 COG5170 CDC55 Serine/threonine 98.8 1.4E-07 3.1E-12 91.9 15.7 276 14-366 27-366 (460)
283 KOG2315 Predicted translation 98.8 1.4E-06 3.1E-11 91.7 23.4 255 17-347 129-410 (566)
284 KOG3914 WD repeat protein WDR4 98.8 8.6E-08 1.9E-12 97.0 13.7 165 68-332 64-231 (390)
285 PRK04043 tolB translocation pr 98.8 5.1E-06 1.1E-10 90.1 28.5 141 68-236 189-339 (419)
286 KOG4532 WD40-like repeat conta 98.8 1.1E-06 2.4E-11 84.3 19.5 240 70-413 71-323 (344)
287 TIGR03300 assembly_YfgL outer 98.8 6.4E-06 1.4E-10 88.8 28.4 258 24-364 104-376 (377)
288 KOG2066 Vacuolar assembly/sort 98.7 1.3E-07 2.8E-12 103.2 14.6 176 14-232 40-222 (846)
289 COG5170 CDC55 Serine/threonine 98.7 9.1E-08 2E-12 93.2 12.1 264 65-419 25-364 (460)
290 PF15492 Nbas_N: Neuroblastoma 98.7 1.3E-05 2.8E-10 78.5 26.9 242 72-376 3-268 (282)
291 KOG0309 Conserved WD40 repeat- 98.7 5.2E-08 1.1E-12 104.7 10.3 293 14-416 25-333 (1081)
292 COG4946 Uncharacterized protei 98.7 8.9E-06 1.9E-10 83.9 25.6 146 10-186 357-507 (668)
293 KOG4190 Uncharacterized conser 98.7 7.7E-08 1.7E-12 100.0 10.6 299 56-416 725-1030(1034)
294 PLN02919 haloacid dehalogenase 98.7 9.7E-06 2.1E-10 97.5 28.4 172 16-202 626-838 (1057)
295 KOG1912 WD40 repeat protein [G 98.6 1.2E-06 2.6E-11 95.1 17.9 265 68-368 17-305 (1062)
296 KOG2695 WD40 repeat protein [G 98.6 1.4E-07 3E-12 93.4 9.8 156 29-210 228-389 (425)
297 PF07433 DUF1513: Protein of u 98.6 2.4E-05 5.3E-10 78.8 25.8 239 69-362 7-280 (305)
298 KOG0882 Cyclophilin-related pe 98.6 7.1E-07 1.5E-11 91.3 14.8 272 10-379 7-317 (558)
299 KOG1275 PAB-dependent poly(A) 98.6 1.2E-06 2.7E-11 96.7 17.3 182 78-365 147-340 (1118)
300 KOG1920 IkappaB kinase complex 98.6 1.1E-05 2.5E-10 92.1 25.2 288 5-367 59-365 (1265)
301 KOG4714 Nucleoporin [Nuclear s 98.6 6E-07 1.3E-11 85.8 12.1 253 9-365 32-316 (319)
302 PF09453 HIRA_B: HIRA B motif; 98.6 3.3E-08 7.2E-13 57.6 1.9 22 476-497 1-22 (24)
303 KOG1645 RING-finger-containing 98.5 4.5E-06 9.7E-11 84.6 16.7 258 59-367 186-461 (463)
304 KOG4714 Nucleoporin [Nuclear s 98.5 9.9E-07 2.1E-11 84.3 11.2 148 23-198 99-255 (319)
305 PF08450 SGL: SMP-30/Gluconola 98.5 0.0003 6.4E-09 70.9 30.1 214 18-270 4-233 (246)
306 PF15492 Nbas_N: Neuroblastoma 98.5 2.3E-05 5.1E-10 76.7 20.7 167 17-207 47-269 (282)
307 KOG1832 HIV-1 Vpr-binding prot 98.5 1.2E-07 2.7E-12 103.6 5.0 226 56-355 1091-1319(1516)
308 PF13360 PQQ_2: PQQ-like domai 98.5 4.5E-05 9.8E-10 76.3 23.4 143 34-207 2-150 (238)
309 PF00930 DPPIV_N: Dipeptidyl p 98.5 0.00016 3.4E-09 77.2 28.0 319 22-410 1-345 (353)
310 PF00400 WD40: WD domain, G-be 98.4 6.5E-07 1.4E-11 61.8 6.4 38 57-94 2-39 (39)
311 KOG0882 Cyclophilin-related pe 98.4 1.2E-06 2.6E-11 89.7 10.9 250 65-414 8-298 (558)
312 KOG1832 HIV-1 Vpr-binding prot 98.4 2.7E-07 5.9E-12 101.0 6.5 273 10-355 1099-1377(1516)
313 KOG3621 WD40 repeat-containing 98.4 4.7E-05 1E-09 82.7 22.8 159 15-200 35-200 (726)
314 PRK11138 outer membrane biogen 98.4 0.0001 2.3E-09 79.9 25.7 277 24-374 68-360 (394)
315 PF00400 WD40: WD domain, G-be 98.4 1.3E-06 2.9E-11 60.2 7.0 39 115-153 1-39 (39)
316 PF07433 DUF1513: Protein of u 98.4 0.0001 2.2E-09 74.4 22.6 188 19-233 56-274 (305)
317 PF06433 Me-amine-dh_H: Methyl 98.4 0.00027 5.8E-09 72.3 25.7 280 35-376 17-329 (342)
318 PRK11138 outer membrane biogen 98.3 0.0003 6.5E-09 76.3 27.0 263 25-366 120-393 (394)
319 KOG2695 WD40 repeat protein [G 98.3 1.3E-06 2.8E-11 86.7 7.1 133 14-167 253-388 (425)
320 KOG3617 WD40 and TPR repeat-co 98.3 1.7E-05 3.6E-10 87.1 15.2 110 16-155 18-131 (1416)
321 KOG2114 Vacuolar assembly/sort 98.2 0.00024 5.3E-09 78.8 22.3 217 15-267 27-262 (933)
322 PF11768 DUF3312: Protein of u 98.1 0.00055 1.2E-08 73.7 21.3 74 123-198 257-330 (545)
323 KOG4649 PQQ (pyrrolo-quinoline 98.1 0.0071 1.5E-07 58.6 26.3 105 24-157 62-167 (354)
324 PF11768 DUF3312: Protein of u 98.1 7.2E-05 1.6E-09 80.3 14.3 111 14-138 260-370 (545)
325 KOG3617 WD40 and TPR repeat-co 98.0 5.7E-05 1.2E-09 83.1 12.3 110 70-198 19-132 (1416)
326 KOG1275 PAB-dependent poly(A) 98.0 0.00012 2.6E-09 81.6 14.8 174 25-235 147-332 (1118)
327 KOG1920 IkappaB kinase complex 98.0 0.00073 1.6E-08 77.9 21.4 235 123-411 66-308 (1265)
328 KOG2066 Vacuolar assembly/sort 98.0 0.00036 7.8E-09 77.0 17.9 154 10-197 56-233 (846)
329 PF13360 PQQ_2: PQQ-like domai 98.0 0.0015 3.1E-08 65.3 21.4 148 23-201 34-195 (238)
330 COG0823 TolB Periplasmic compo 97.9 0.00058 1.3E-08 73.8 18.9 192 8-237 187-391 (425)
331 KOG1645 RING-finger-containing 97.9 0.00065 1.4E-08 69.3 16.6 84 116-200 184-269 (463)
332 PF04053 Coatomer_WDAD: Coatom 97.9 0.0017 3.8E-08 70.4 21.2 162 36-235 3-164 (443)
333 PRK02888 nitrous-oxide reducta 97.9 0.0027 5.9E-08 70.1 22.6 184 133-368 200-405 (635)
334 PF04053 Coatomer_WDAD: Coatom 97.8 0.0037 8E-08 67.9 22.0 141 14-197 33-173 (443)
335 cd00216 PQQ_DH Dehydrogenases 97.8 0.013 2.9E-07 65.3 27.0 157 25-207 61-274 (488)
336 PRK02888 nitrous-oxide reducta 97.8 0.0024 5.2E-08 70.5 20.3 111 124-236 319-452 (635)
337 KOG2114 Vacuolar assembly/sort 97.8 0.0031 6.7E-08 70.4 20.9 218 73-355 30-271 (933)
338 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.022 4.8E-07 55.3 24.0 111 78-207 23-133 (354)
339 PF08596 Lgl_C: Lethal giant l 97.8 0.0046 9.9E-08 66.3 21.9 128 68-196 3-172 (395)
340 PF06977 SdiA-regulated: SdiA- 97.8 0.011 2.4E-07 59.0 23.1 198 15-233 23-239 (248)
341 PF00930 DPPIV_N: Dipeptidyl p 97.7 0.016 3.4E-07 61.8 25.9 278 14-356 43-346 (353)
342 cd00216 PQQ_DH Dehydrogenases 97.7 0.036 7.7E-07 61.9 29.4 170 26-206 111-328 (488)
343 KOG1008 Uncharacterized conser 97.7 2.3E-05 5E-10 83.9 3.7 159 15-196 58-224 (783)
344 PF14583 Pectate_lyase22: Olig 97.7 0.097 2.1E-06 54.9 29.8 181 20-234 42-256 (386)
345 PF14583 Pectate_lyase22: Olig 97.7 0.029 6.4E-07 58.7 25.2 309 55-422 19-381 (386)
346 COG3490 Uncharacterized protei 97.6 0.016 3.5E-07 57.0 21.2 242 70-365 71-346 (366)
347 PF02897 Peptidase_S9_N: Proly 97.6 0.041 8.8E-07 60.1 27.6 246 68-371 125-408 (414)
348 COG3391 Uncharacterized conser 97.6 0.14 3.1E-06 55.0 30.4 148 68-236 75-227 (381)
349 PF06977 SdiA-regulated: SdiA- 97.5 0.03 6.6E-07 55.8 22.8 120 60-197 15-147 (248)
350 COG0823 TolB Periplasmic compo 97.5 0.012 2.7E-07 63.6 21.5 193 120-357 187-389 (425)
351 PF00780 CNH: CNH domain; Int 97.5 0.12 2.6E-06 52.9 27.9 162 23-205 5-173 (275)
352 PF02897 Peptidase_S9_N: Proly 97.4 0.29 6.3E-06 53.4 30.1 159 15-201 125-313 (414)
353 COG3391 Uncharacterized conser 97.3 0.1 2.2E-06 56.2 25.1 196 17-251 77-285 (381)
354 PF08596 Lgl_C: Lethal giant l 97.3 0.022 4.7E-07 61.2 19.3 195 14-234 87-325 (395)
355 PF04841 Vps16_N: Vps16, N-ter 97.3 0.14 3E-06 55.6 25.9 50 36-98 62-111 (410)
356 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.3 0.26 5.6E-06 55.4 28.6 164 26-202 121-338 (527)
357 KOG3621 WD40 repeat-containing 97.2 0.0016 3.5E-08 71.1 9.6 118 65-198 32-155 (726)
358 PF06433 Me-amine-dh_H: Methyl 97.2 0.37 8.1E-06 49.7 26.8 261 17-335 39-331 (342)
359 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.32 7E-06 54.6 28.2 58 316-375 441-498 (527)
360 KOG1008 Uncharacterized conser 97.2 0.00011 2.5E-09 78.8 0.7 190 10-227 100-315 (783)
361 PF07995 GSDH: Glucose / Sorbo 97.1 0.06 1.3E-06 56.7 20.5 58 305-362 270-330 (331)
362 KOG4640 Anaphase-promoting com 97.1 0.0024 5.2E-08 69.1 9.7 94 66-177 20-115 (665)
363 KOG4640 Anaphase-promoting com 97.1 0.0023 5E-08 69.2 9.5 75 14-100 21-96 (665)
364 smart00320 WD40 WD40 repeats. 97.1 0.0015 3.2E-08 43.2 5.3 38 57-94 3-40 (40)
365 COG3386 Gluconolactonase [Carb 97.0 0.21 4.5E-06 51.7 23.1 228 72-357 30-275 (307)
366 PF00780 CNH: CNH domain; Int 97.0 0.24 5.3E-06 50.5 23.8 127 77-233 6-154 (275)
367 COG3386 Gluconolactonase [Carb 97.0 0.086 1.9E-06 54.5 20.0 225 131-408 30-271 (307)
368 smart00320 WD40 WD40 repeats. 97.0 0.0022 4.9E-08 42.3 5.8 39 157-195 2-40 (40)
369 PF03178 CPSF_A: CPSF A subuni 97.0 0.16 3.4E-06 53.4 22.1 136 35-197 2-157 (321)
370 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.079 1.7E-06 45.2 15.6 100 16-150 2-109 (111)
371 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.088 1.9E-06 44.9 15.7 100 69-192 2-109 (111)
372 PF08553 VID27: VID27 cytoplas 96.9 0.026 5.7E-07 64.8 16.4 146 137-367 493-647 (794)
373 PRK13616 lipoprotein LpqB; Pro 96.9 0.11 2.3E-06 58.9 20.8 142 67-232 350-513 (591)
374 PRK13616 lipoprotein LpqB; Pro 96.8 0.027 5.8E-07 63.7 15.0 159 15-196 351-524 (591)
375 PRK10115 protease 2; Provision 96.7 1.8 3.9E-05 50.4 29.9 111 67-196 127-254 (686)
376 KOG1897 Damage-specific DNA bi 96.7 1.8 3.9E-05 50.1 29.5 114 15-154 489-612 (1096)
377 PF04841 Vps16_N: Vps16, N-ter 96.7 0.35 7.5E-06 52.6 22.5 49 148-198 62-110 (410)
378 PF14655 RAB3GAP2_N: Rab3 GTPa 96.6 0.96 2.1E-05 48.6 24.9 79 17-97 5-98 (415)
379 PF05694 SBP56: 56kDa selenium 96.6 1.1 2.3E-05 47.8 24.2 147 24-194 86-274 (461)
380 TIGR02604 Piru_Ver_Nterm putat 96.6 0.89 1.9E-05 48.7 24.6 146 67-234 14-202 (367)
381 PF08553 VID27: VID27 cytoplas 96.5 0.056 1.2E-06 62.2 15.3 138 34-196 503-646 (794)
382 KOG2395 Protein involved in va 96.4 0.057 1.2E-06 57.6 13.4 149 136-367 344-500 (644)
383 COG3204 Uncharacterized protei 96.3 0.69 1.5E-05 46.4 19.6 210 3-233 76-301 (316)
384 KOG2079 Vacuolar assembly/sort 96.2 0.065 1.4E-06 61.8 13.6 102 77-196 98-202 (1206)
385 PF03178 CPSF_A: CPSF A subuni 96.2 0.24 5.2E-06 52.0 17.4 148 25-197 42-202 (321)
386 PF07995 GSDH: Glucose / Sorbo 96.1 0.92 2E-05 47.8 21.2 71 337-416 252-329 (331)
387 KOG1897 Damage-specific DNA bi 96.1 4.1 8.9E-05 47.3 29.4 306 14-370 531-901 (1096)
388 COG3204 Uncharacterized protei 96.0 1.8 3.9E-05 43.5 20.8 114 122-235 82-200 (316)
389 KOG2395 Protein involved in va 96.0 0.1 2.3E-06 55.7 12.8 142 30-196 351-499 (644)
390 TIGR03074 PQQ_membr_DH membran 95.9 1.9 4.1E-05 50.4 23.9 120 78-207 194-354 (764)
391 PF14727 PHTB1_N: PTHB1 N-term 95.7 3.8 8.3E-05 44.2 29.8 156 25-197 37-204 (418)
392 PF10647 Gmad1: Lipoprotein Lp 95.7 0.66 1.4E-05 46.8 17.1 148 14-189 24-187 (253)
393 KOG3630 Nuclear pore complex, 95.7 0.069 1.5E-06 61.8 10.7 161 7-185 94-261 (1405)
394 TIGR02604 Piru_Ver_Nterm putat 95.6 0.61 1.3E-05 50.0 17.5 152 15-186 15-202 (367)
395 KOG4499 Ca2+-binding protein R 95.5 2 4.4E-05 41.5 18.3 93 128-226 160-264 (310)
396 KOG2079 Vacuolar assembly/sort 95.5 0.054 1.2E-06 62.4 9.1 103 23-154 97-202 (1206)
397 COG5276 Uncharacterized conser 95.5 3.1 6.8E-05 41.7 27.3 194 6-233 35-231 (370)
398 KOG2444 WD40 repeat protein [G 95.5 0.05 1.1E-06 52.2 7.4 105 25-156 70-178 (238)
399 PHA02713 hypothetical protein; 95.4 1.6 3.5E-05 49.5 20.8 93 77-188 303-408 (557)
400 KOG4499 Ca2+-binding protein R 95.4 0.78 1.7E-05 44.3 15.0 99 68-178 159-264 (310)
401 PF05096 Glu_cyclase_2: Glutam 95.3 2.5 5.5E-05 42.2 18.9 129 57-206 34-166 (264)
402 COG3490 Uncharacterized protei 95.2 0.76 1.6E-05 45.7 14.8 180 5-206 112-319 (366)
403 TIGR03074 PQQ_membr_DH membran 95.2 5.5 0.00012 46.7 24.4 145 4-164 164-353 (764)
404 PF12894 Apc4_WD40: Anaphase-p 95.1 0.077 1.7E-06 37.9 5.7 35 166-201 10-44 (47)
405 PF15390 DUF4613: Domain of un 95.1 2 4.3E-05 47.1 18.6 121 67-198 57-187 (671)
406 KOG3630 Nuclear pore complex, 95.0 0.3 6.4E-06 56.9 12.9 209 17-234 45-262 (1405)
407 PF05096 Glu_cyclase_2: Glutam 94.8 5 0.00011 40.2 23.8 188 15-235 46-250 (264)
408 KOG4441 Proteins containing BT 94.8 2.4 5.3E-05 48.1 19.7 149 23-200 283-455 (571)
409 PF12234 Rav1p_C: RAVE protein 94.7 1.4 3.1E-05 49.6 17.1 120 59-196 22-155 (631)
410 PF12894 Apc4_WD40: Anaphase-p 94.6 0.12 2.5E-06 36.9 5.6 31 66-96 11-41 (47)
411 KOG2444 WD40 repeat protein [G 94.4 0.12 2.7E-06 49.5 6.9 104 78-197 70-177 (238)
412 PF10647 Gmad1: Lipoprotein Lp 94.3 6.6 0.00014 39.5 23.0 149 68-236 25-186 (253)
413 PF14870 PSII_BNR: Photosynthe 94.3 7.4 0.00016 40.1 29.6 273 14-364 17-301 (302)
414 KOG4441 Proteins containing BT 94.3 3.9 8.5E-05 46.4 20.0 103 77-198 284-405 (571)
415 PRK13684 Ycf48-like protein; P 94.1 2 4.3E-05 45.3 16.3 153 14-196 173-330 (334)
416 PF14870 PSII_BNR: Photosynthe 94.1 8.3 0.00018 39.8 27.1 152 113-272 134-286 (302)
417 PHA02713 hypothetical protein; 94.1 2.6 5.6E-05 47.9 18.0 67 305-372 463-538 (557)
418 PF10168 Nup88: Nuclear pore c 94.0 16 0.00034 42.6 26.1 91 66-157 84-181 (717)
419 TIGR03606 non_repeat_PQQ dehyd 93.8 13 0.00027 40.8 29.0 57 305-362 368-430 (454)
420 PRK10115 protease 2; Provision 93.7 16 0.00034 42.7 23.9 102 126-234 127-241 (686)
421 KOG2247 WD40 repeat-containing 93.6 0.02 4.4E-07 60.4 0.0 142 18-191 39-182 (615)
422 PF10168 Nup88: Nuclear pore c 93.5 14 0.00031 42.9 22.9 76 123-198 82-180 (717)
423 PHA03098 kelch-like protein; P 93.5 3.3 7.2E-05 46.8 17.8 105 77-200 342-467 (534)
424 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 13 0.00029 40.1 22.7 115 71-195 6-144 (415)
425 PF08728 CRT10: CRT10; InterP 93.3 1.7 3.7E-05 49.5 14.4 169 25-196 49-245 (717)
426 KOG2280 Vacuolar assembly/sort 93.2 6.3 0.00014 44.6 18.1 44 306-349 228-271 (829)
427 KOG1916 Nuclear protein, conta 93.1 0.086 1.9E-06 59.6 4.0 146 35-202 153-328 (1283)
428 TIGR03118 PEPCTERM_chp_1 conse 92.9 12 0.00026 38.1 18.3 229 127-376 24-288 (336)
429 PF15390 DUF4613: Domain of un 92.8 2.5 5.5E-05 46.3 14.2 127 6-156 50-187 (671)
430 KOG2377 Uncharacterized conser 92.2 1.1 2.5E-05 47.2 10.4 119 14-157 67-187 (657)
431 PF05694 SBP56: 56kDa selenium 91.2 24 0.00053 37.9 22.3 189 19-235 135-393 (461)
432 KOG4460 Nuclear pore complex, 90.9 5.4 0.00012 43.1 13.7 26 68-93 105-130 (741)
433 PF12234 Rav1p_C: RAVE protein 90.8 6.7 0.00014 44.5 15.3 120 113-235 17-148 (631)
434 PHA03098 kelch-like protein; P 90.5 8.5 0.00018 43.5 16.6 63 136-200 294-369 (534)
435 KOG2377 Uncharacterized conser 90.5 4.1 8.9E-05 43.2 12.4 153 24-199 32-187 (657)
436 PF13449 Phytase-like: Esteras 89.9 23 0.00051 37.1 18.1 162 15-184 21-231 (326)
437 PF13449 Phytase-like: Esteras 89.5 25 0.00054 36.9 17.9 159 65-233 18-232 (326)
438 KOG2247 WD40 repeat-containing 89.2 0.089 1.9E-06 55.7 -0.8 144 65-233 33-177 (615)
439 PF10313 DUF2415: Uncharacteri 89.1 1.5 3.3E-05 30.4 5.4 31 168-198 1-34 (43)
440 PRK13684 Ycf48-like protein; P 89.0 33 0.00071 36.1 29.8 149 167-365 172-329 (334)
441 KOG2109 WD40 repeat protein [G 88.8 2 4.3E-05 47.6 8.9 87 149-237 297-390 (788)
442 PF10313 DUF2415: Uncharacteri 88.7 1.5 3.2E-05 30.5 5.2 32 67-98 1-35 (43)
443 PF14761 HPS3_N: Hermansky-Pud 87.8 27 0.00059 33.8 16.3 156 26-196 29-213 (215)
444 TIGR03118 PEPCTERM_chp_1 conse 87.5 36 0.00078 34.8 22.5 78 147-225 222-307 (336)
445 PF08728 CRT10: CRT10; InterP 87.2 4 8.6E-05 46.7 10.4 126 15-155 102-246 (717)
446 COG4590 ABC-type uncharacteriz 87.2 8 0.00017 41.1 11.7 61 307-370 329-389 (733)
447 PLN00033 photosystem II stabil 86.4 52 0.0011 35.5 18.1 148 16-194 241-396 (398)
448 PHA02790 Kelch-like protein; P 86.0 27 0.00058 38.9 16.4 62 136-199 318-386 (480)
449 KOG1900 Nuclear pore complex, 86.0 8.4 0.00018 46.4 12.4 145 32-198 96-273 (1311)
450 PF11715 Nup160: Nucleoporin N 86.0 4.3 9.3E-05 46.1 10.3 97 111-207 129-258 (547)
451 KOG2280 Vacuolar assembly/sort 85.9 41 0.00089 38.4 17.0 40 168-207 217-256 (829)
452 KOG1916 Nuclear protein, conta 85.1 0.77 1.7E-05 52.3 3.5 69 16-96 186-265 (1283)
453 COG5276 Uncharacterized conser 85.0 47 0.001 33.7 18.5 158 16-205 89-249 (370)
454 PF05935 Arylsulfotrans: Aryls 85.0 32 0.0007 38.2 16.3 116 72-208 153-312 (477)
455 PF14761 HPS3_N: Hermansky-Pud 84.7 27 0.00059 33.8 13.2 103 79-198 29-164 (215)
456 COG5167 VID27 Protein involved 84.7 12 0.00025 40.6 11.6 60 137-197 573-632 (776)
457 PF07569 Hira: TUP1-like enhan 84.5 5.7 0.00012 39.0 9.0 63 134-197 19-95 (219)
458 PHA02790 Kelch-like protein; P 84.3 18 0.00039 40.2 14.0 143 23-198 317-471 (480)
459 COG5167 VID27 Protein involved 84.3 39 0.00084 36.8 15.2 59 307-367 574-632 (776)
460 PF07569 Hira: TUP1-like enhan 84.2 4.1 8.8E-05 40.0 7.8 66 305-371 21-99 (219)
461 KOG1983 Tomosyn and related SN 83.2 22 0.00048 43.2 14.8 30 67-96 36-65 (993)
462 PF03022 MRJP: Major royal jel 82.6 62 0.0013 33.2 22.4 208 15-235 2-255 (287)
463 COG5290 IkappaB kinase complex 82.0 58 0.0013 37.4 16.0 32 64-95 110-141 (1243)
464 PF02333 Phytase: Phytase; In 81.8 77 0.0017 33.8 18.9 150 23-197 66-237 (381)
465 COG3823 Glutamine cyclotransfe 81.5 53 0.0011 31.7 14.1 110 77-205 55-166 (262)
466 PF12768 Rax2: Cortical protei 81.3 28 0.0006 35.6 12.7 53 35-98 16-74 (281)
467 PF12657 TFIIIC_delta: Transcr 81.2 13 0.00029 34.9 9.8 31 126-156 86-122 (173)
468 PRK14131 N-acetylneuraminic ac 81.1 82 0.0018 33.7 20.3 53 136-188 84-149 (376)
469 KOG3522 Predicted guanine nucl 80.3 5.9 0.00013 45.3 7.9 152 27-203 549-703 (925)
470 PF03022 MRJP: Major royal jel 80.2 75 0.0016 32.6 20.7 60 148-207 35-106 (287)
471 COG4257 Vgb Streptogramin lyas 80.2 69 0.0015 32.2 17.1 195 129-365 65-260 (353)
472 PF11635 Med16: Mediator compl 80.2 1E+02 0.0022 36.6 18.6 124 68-192 182-345 (753)
473 COG4880 Secreted protein conta 79.9 31 0.00068 36.6 12.4 164 13-204 427-599 (603)
474 KOG4460 Nuclear pore complex, 79.7 56 0.0012 35.8 14.4 101 169-331 105-205 (741)
475 PF07250 Glyoxal_oxid_N: Glyox 79.5 42 0.00091 33.4 12.9 88 149-236 48-138 (243)
476 PF14781 BBS2_N: Ciliary BBSom 79.1 47 0.001 29.6 13.7 123 18-163 3-133 (136)
477 PF11715 Nup160: Nucleoporin N 79.1 28 0.0006 39.5 13.4 90 76-166 156-259 (547)
478 COG4590 ABC-type uncharacteriz 78.7 8.9 0.00019 40.8 8.1 171 14-208 221-397 (733)
479 PF14781 BBS2_N: Ciliary BBSom 78.0 50 0.0011 29.4 12.7 121 71-203 3-131 (136)
480 PF10214 Rrn6: RNA polymerase 77.8 1.6E+02 0.0034 35.0 24.8 178 8-198 74-277 (765)
481 KOG3616 Selective LIM binding 77.2 16 0.00034 41.3 9.8 218 167-416 14-238 (1636)
482 PF12768 Rax2: Cortical protei 76.7 38 0.00082 34.6 12.0 123 147-271 16-146 (281)
483 TIGR02276 beta_rpt_yvtn 40-res 76.4 15 0.00032 24.8 6.5 40 135-175 1-41 (42)
484 PF12657 TFIIIC_delta: Transcr 76.3 17 0.00036 34.2 8.9 30 68-97 87-122 (173)
485 PRK14131 N-acetylneuraminic ac 76.0 1.2E+02 0.0025 32.5 21.7 14 147-160 189-202 (376)
486 COG1520 FOG: WD40-like repeat 75.3 1.2E+02 0.0026 32.3 22.9 108 27-164 70-180 (370)
487 PF02333 Phytase: Phytase; In 74.4 1.3E+02 0.0027 32.2 19.9 195 136-368 67-291 (381)
488 TIGR03606 non_repeat_PQQ dehyd 74.3 1.1E+02 0.0025 33.5 15.6 59 121-179 25-90 (454)
489 PLN02153 epithiospecifier prot 74.0 1.2E+02 0.0026 31.8 18.5 15 147-161 217-231 (341)
490 KOG1900 Nuclear pore complex, 73.7 1.2E+02 0.0026 37.2 16.4 36 335-370 240-275 (1311)
491 PF07676 PD40: WD40-like Beta 73.6 12 0.00025 25.1 5.3 32 62-93 4-38 (39)
492 PF08801 Nucleoporin_N: Nup133 72.6 1.1E+02 0.0024 33.2 15.6 160 125-367 26-219 (422)
493 PF07250 Glyoxal_oxid_N: Glyox 72.4 44 0.00094 33.3 10.9 121 73-206 73-206 (243)
494 TIGR03547 muta_rot_YjhT mutatr 71.9 1.4E+02 0.0029 31.5 19.6 53 136-188 63-128 (346)
495 PF14727 PHTB1_N: PTHB1 N-term 70.7 1.6E+02 0.0035 31.9 27.6 139 77-235 36-194 (418)
496 PF05935 Arylsulfotrans: Aryls 70.6 1.8E+02 0.0039 32.3 21.6 41 127-167 272-313 (477)
497 PLN00033 photosystem II stabil 70.3 1.6E+02 0.0035 31.8 31.9 55 308-364 340-396 (398)
498 PLN02153 epithiospecifier prot 70.0 1.1E+02 0.0025 32.0 14.5 25 136-160 137-172 (341)
499 TIGR03548 mutarot_permut cycli 70.0 1.1E+02 0.0023 31.9 14.2 150 24-200 72-282 (323)
500 PF11635 Med16: Mediator compl 69.1 2.5E+02 0.0053 33.3 20.7 72 167-238 259-343 (753)
No 1
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=4.2e-58 Score=502.79 Aligned_cols=574 Identities=39% Similarity=0.649 Sum_probs=436.3
Q ss_pred CeeecCceeeecCceEEEEEEcCCCCEEEEEe--CCCeEEEEeCCcCCCC-CCCCcccceeeeeecCCCCcEEEEEEcCC
Q 040062 1 MIAEKPSWVRHEGMQIFSIDVQPGALRFATGG--GDHKVRIWNMKSVGKN-FENDESTQRLLATLRDHFGSVNCVRWAKH 77 (689)
Q Consensus 1 M~~~k~~~~~H~g~~I~si~~spdg~~Latgs--~Dg~V~IWd~~~~~~~-~~~~~~~~~~~~~l~~h~~~V~~v~fspd 77 (689)
|++.||.|+.|.+..|++++++|||.++|||| .|+.++||+.+..... .+.+...++.++++..|.+.|+|++|+||
T Consensus 1 M~l~kp~wv~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~d 80 (942)
T KOG0973|consen 1 MKLLKPTWVNHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPD 80 (942)
T ss_pred CceecccccccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCC
Confidence 99999999999999999999999999999999 8999999999886533 33333458899999999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCC-CCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGS-GEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
|+|||+|++|+.|.||+.........|++ +...+.++|+.+..+.+|+.+|.+++|+|++.+|++++.|++|.|||..+
T Consensus 81 G~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 81 GSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred CCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEcccc
Confidence 99999999999999999986433445555 67789999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
++.+..+++|.+.|.++.|+|-|+||++.++|++|+||++.++.+.+.+..++......++++++.|||||++|++.+++
T Consensus 161 F~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~ 240 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAV 240 (942)
T ss_pred ceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR 316 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg 316 (689)
++....+.++++++|.....|.||.+++.+++|+|..|...... +.... ....+.++|+|++|+
T Consensus 241 n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n-------------g~~~~---~~~~y~i~AvgSqDr 304 (942)
T KOG0973|consen 241 NGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN-------------GTSTQ---PNCYYCIAAVGSQDR 304 (942)
T ss_pred cCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc-------------CCccC---CCcceEEEEEecCCc
Confidence 99999999999999999999999999999999999976543221 00000 001235899999999
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCcee
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLA 396 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~ 396 (689)
+|.||.....++++.+......+|.+|+|+|||..|++||.||+|.+++|+.++++..+.+++.......+||..+.
T Consensus 305 SlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ElG~~ls~ee~~~~~l~~yg~~~~--- 381 (942)
T KOG0973|consen 305 SLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEKELGVALSEEEISELDLSRYGKSRP--- 381 (942)
T ss_pred cEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchHHhCcccChhhhchhhHHHhcCCch---
Confidence 99999999999999999988999999999999999999999999999999999999999999988777677873311
Q ss_pred eeecCchhhhhHhhccccceeeeeeecccccCCCcccccccccccCCCCCccCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 040062 397 NLAETPAQLLLEAASAKETTTKKVVSDVQAIQAPVKSSVNIGVTTKTSEPQTDNGKKSGGVASDGLNKVSTSGRISSPVK 476 (689)
Q Consensus 397 ~l~~Spdg~~Las~s~DG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (689)
....| .|...+. .++...
T Consensus 382 -~le~p----------------------~q~~~~~-----------------------------~~~~s~---------- 399 (942)
T KOG0973|consen 382 -KLELP----------------------LQSQKQT-----------------------------SFEESN---------- 399 (942)
T ss_pred -hhcCC----------------------hhhcccc-----------------------------Cccccc----------
Confidence 11111 0000000 000000
Q ss_pred ceeEECCCCceeeceeeccCCCCCCCccCCcCCcccCCCCccccCCCCCCCCCCCccccccccccccc-CCCCccccccC
Q 040062 477 QREYRRPDGRKRIIPEAVGVPVQQEGVTGGAQSQLHDFPPVSSDHRKDNNGVVPADGVMREVSVRGTV-GRSSDVKERSG 555 (689)
Q Consensus 477 q~~~~~~dg~~r~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 555 (689)
.--+.+|+++|+.|+++..... . ..++. ...+|+. .|+... .+.+....+ .....++++..
T Consensus 400 -~~~~~~~~~~~t~P~~i~~~~~-~----~~~~t-s~~~~~~-----~p~~is------t~~~~~~~~~~~~~~v~k~~~ 461 (942)
T KOG0973|consen 400 -ESIKAEDASRRTSPTDIPPSAS-D----GTLPT-SKSTPQN-----LPNEIS------TRETAMKFNTCTKKVVKKRGR 461 (942)
T ss_pred -ccccccccccCcCccccccccc-c----CCccc-cccCccc-----CcccCC------ChhhhhhhccccccchhhcCC
Confidence 0111189999999999885551 0 00000 0011110 111111 111111011 12234455544
Q ss_pred CcccceecCCcccccCCCCCCCCCCcceeecCcccccc-ccccccceeeeeeecccCCCCCCceEEEecCCCCccccccc
Q 040062 556 VTARATITESLVIEKVPASAAGDGNVGVEQSGNVKASG-SVAATTTTLSIRVFDKKEGEDNVPVCLEARPREHAVNDIVG 634 (689)
Q Consensus 556 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (689)
....+...+ .+.+.| + ..++.++....+. +.++. .+. |.....+.+....++.++.++.+..+++=|
T Consensus 462 ~~~~s~~s~--~~~~~P-~------~~~~~~~~~~e~k~~~~~s--~s~-~~~~~p~~~~~~~~~~~~l~r~~~~~~~~~ 529 (942)
T KOG0973|consen 462 PPKDSTFSD--NAIGLP-S------KEVLRTEFSKEGKKVSSKS--FST-RLVATPGVPSLIKMSPVNLPRLHDSDLVGG 529 (942)
T ss_pred CCccccccc--ccccCC-c------hhccccccccccceeecCC--cce-eeecCCCCccccccccccCccccccccccC
Confidence 444444433 111111 1 1355555545444 33333 222 222222334556688888887777654422
Q ss_pred cCccccCcceEEEEeeCCeeeEeeecCCcEEEEeecceEEEEEecCceeEEee
Q 040062 635 MGSTCMMKETEIACTRGSQTLWSDRITGKVTVLAGNINFWAVGCEDGCLQVSK 687 (689)
Q Consensus 635 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 687 (689)
....+.....+.+.++|.++|-.+.-.+|+.++..-+|||..+|||+ ++|+
T Consensus 530 -~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~k~~a~~~edgs-~~~~ 580 (942)
T KOG0973|consen 530 -LEERDTILISISKVKNGVPLLPAGFGSDVVMLAIDEKKWALRPEDGS-RLMS 580 (942)
T ss_pred -cccccccccceeeccCCceeeeecccCceeeecccccchhcccccCc-cccc
Confidence 22234557789999999999999998889999999999999999999 4443
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-48 Score=377.72 Aligned_cols=324 Identities=27% Similarity=0.448 Sum_probs=287.0
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ++|.|+.|+|+|.+|++|+.|.++|+||+.+ ...+.+.++|...|.|++|+|||+.||+|+.
T Consensus 110 S~~GH~-e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~T-----------eTp~~t~KgH~~WVlcvawsPDgk~iASG~~ 177 (480)
T KOG0271|consen 110 SIAGHG-EAVLSVQFSPTGSRLVTGSGDTTVRLWDLDT-----------ETPLFTCKGHKNWVLCVAWSPDGKKIASGSK 177 (480)
T ss_pred ccCCCC-CcEEEEEecCCCceEEecCCCceEEeeccCC-----------CCcceeecCCccEEEEEEECCCcchhhcccc
Confidence 456788 5999999999999999999999999999998 7889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
||.|++||..++. .....|.+|...|++|+|.| ..++||+++.||.|+|||+..+.++.
T Consensus 178 dg~I~lwdpktg~----------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 178 DGSIRLWDPKTGQ----------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred CCeEEEecCCCCC----------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 9999999999885 46678899999999999976 56799999999999999999999999
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE-----------EcCCCCe-
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG-----------WSPCGHF- 229 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~-----------~spdg~~- 229 (689)
.+.+|+.+|+|++|--+ .+|++++.|++|++|+..++.+.+++.+|... |+.++ |.|.++.
T Consensus 242 ~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahw------vN~lalsTdy~LRtgaf~~t~~~~ 314 (480)
T KOG0271|consen 242 TLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHW------VNHLALSTDYVLRTGAFDHTGRKP 314 (480)
T ss_pred EeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhHHHhhcccchh------eeeeeccchhhhhccccccccccC
Confidence 99999999999999754 48999999999999999999999999887554 44443 4454544
Q ss_pred ------------------------EEEecCCCCCccccceeecCCce-eeeeecCCCCCEEEEEEcCCcccccccccccc
Q 040062 230 ------------------------ITTTHGFQKPRHSAPVLERGEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEV 284 (689)
Q Consensus 230 ------------------------l~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~ 284 (689)
+++++. ...+.+|+..... ....+.+|..-|..+.|+|++
T Consensus 315 ~~~se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~----------- 379 (480)
T KOG0271|consen 315 KSFSEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDG----------- 379 (480)
T ss_pred CChHHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchhhheeeEEECCCc-----------
Confidence 666654 4566678765443 555688999999999999997
Q ss_pred ccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 285 KAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
.++|+++.|..|++||.++++.+..+. +|-..|+.++|+.|.++|++||.|.++++|
T Consensus 380 ----------------------r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlVS~SkDsTLKvw 436 (480)
T KOG0271|consen 380 ----------------------RYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLVSGSKDSTLKVW 436 (480)
T ss_pred ----------------------cEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEEEcCCCceEEEE
Confidence 899999999999999999999998886 589999999999999999999999999999
Q ss_pred EeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 365 HFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 365 d~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
++.++++...+. +|.+.|.++.|+|||..+++|+.|..+
T Consensus 437 ~V~tkKl~~DLp-------------Gh~DEVf~vDwspDG~rV~sggkdkv~ 475 (480)
T KOG0271|consen 437 DVRTKKLKQDLP-------------GHADEVFAVDWSPDGQRVASGGKDKVL 475 (480)
T ss_pred EeeeeeecccCC-------------CCCceEEEEEecCCCceeecCCCceEE
Confidence 999998875443 478889999999999999999999887
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.4e-41 Score=335.14 Aligned_cols=281 Identities=23% Similarity=0.337 Sum_probs=265.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC--CCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH--GRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd--g~~Lasgs~Dg~I~ 91 (689)
.+|..+.|+.|++.||||+.+|.++||+... ...+++|.+|.+.|.++.|+|. +..||+|+.||+++
T Consensus 176 rPis~~~fS~ds~~laT~swsG~~kvW~~~~-----------~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvk 244 (459)
T KOG0272|consen 176 RPISGCSFSRDSKHLATGSWSGLVKVWSVPQ-----------CNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVK 244 (459)
T ss_pred CcceeeEeecCCCeEEEeecCCceeEeecCC-----------cceeEEEeccccceeeEEEccCCCccceeeeccCCcee
Confidence 5999999999999999999999999999987 6889999999999999999996 67999999999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeE
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
+|++.+. ..+..+.+|...|..++|+|+|++|++++.|.+-++||++++..+...++|...|.
T Consensus 245 lw~~~~e-----------------~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~ 307 (459)
T KOG0272|consen 245 LWKLSQE-----------------TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVF 307 (459)
T ss_pred eeccCCC-----------------cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccc
Confidence 9999886 57788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
+++|++||.++++|+.|..-+|||++++.++..+.+|... |..+.|+|+|..|+++++ +..+++|+....
T Consensus 308 ~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~------I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 308 SIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKE------ILSVAFSPNGYHLATGSS----DNTCKVWDLRMR 377 (459)
T ss_pred eeEecCCCceeeccCccchhheeecccCcEEEEecccccc------eeeEeECCCceEEeecCC----CCcEEEeeeccc
Confidence 9999999999999999999999999999999999998666 999999999999999987 456779999988
Q ss_pred eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE
Q 040062 252 AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV 331 (689)
Q Consensus 252 ~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~ 331 (689)
...+.+.+|..-|..+.|+|. .|.+|++++.|++++||...+..++..
T Consensus 378 ~~ly~ipAH~nlVS~Vk~~p~--------------------------------~g~fL~TasyD~t~kiWs~~~~~~~ks 425 (459)
T KOG0272|consen 378 SELYTIPAHSNLVSQVKYSPQ--------------------------------EGYFLVTASYDNTVKIWSTRTWSPLKS 425 (459)
T ss_pred ccceecccccchhhheEeccc--------------------------------CCeEEEEcccCcceeeecCCCcccchh
Confidence 889999999999999999984 358999999999999999999999988
Q ss_pred ecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 332 AKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 332 ~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+. +|.+.|.++.+++|++++++++.|.+|++|.
T Consensus 426 La-GHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 426 LA-GHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred hc-CCccceEEEEeccCCceEEEeccCceeeecc
Confidence 76 6899999999999999999999999999995
No 4
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-40 Score=323.55 Aligned_cols=284 Identities=27% Similarity=0.444 Sum_probs=255.4
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-----CCCEEEE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-----HGRYIAS 83 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-----dg~~Las 83 (689)
.+|. ..|.|++|+|||+.||+|+.||.|++||.++ .......|.+|...|++++|.| ..++||+
T Consensus 154 KgH~-~WVlcvawsPDgk~iASG~~dg~I~lwdpkt----------g~~~g~~l~gH~K~It~Lawep~hl~p~~r~las 222 (480)
T KOG0271|consen 154 KGHK-NWVLCVAWSPDGKKIASGSKDGSIRLWDPKT----------GQQIGRALRGHKKWITALAWEPLHLVPPCRRLAS 222 (480)
T ss_pred cCCc-cEEEEEEECCCcchhhccccCCeEEEecCCC----------CCcccccccCcccceeEEeecccccCCCccceec
Confidence 4688 6999999999999999999999999999887 3566788999999999999976 5679999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
++.||.|+|||+..+ .++..+.+|+..|+|+.|--+| +|++++.|++|++|+...|.+...+
T Consensus 223 ~skDg~vrIWd~~~~-----------------~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l 284 (480)
T KOG0271|consen 223 SSKDGSVRIWDTKLG-----------------TCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL 284 (480)
T ss_pred ccCCCCEEEEEccCc-----------------eEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh
Confidence 999999999999987 7899999999999999997443 8999999999999999999999999
Q ss_pred ecCCCCeEEEEEc-----------cCCC-------------------------EEEEEeCCCeEEEEECCC-Ccceeecc
Q 040062 164 RGHSSLVKGVAWD-----------PIGS-------------------------FIASQSDDKTVIIWRTSD-WSLAHRTD 206 (689)
Q Consensus 164 ~~h~~~V~~l~~s-----------pdg~-------------------------~las~s~Dg~I~iwd~~~-~~~~~~~~ 206 (689)
++|...|+.|+.+ |.++ .|++|++|.++.+|+-.. .+++....
T Consensus 285 kGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmt 364 (480)
T KOG0271|consen 285 KGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMT 364 (480)
T ss_pred cccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhh
Confidence 9999999998776 3333 499999999999998653 44667777
Q ss_pred CcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccc
Q 040062 207 GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286 (689)
Q Consensus 207 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~ 286 (689)
+|... +..+.||||+++|++++- ...+++|+..+.+....|.||-++|+.++|+.+.
T Consensus 365 gHq~l------Vn~V~fSPd~r~IASaSF----DkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDs------------- 421 (480)
T KOG0271|consen 365 GHQAL------VNHVSFSPDGRYIASASF----DKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADS------------- 421 (480)
T ss_pred chhhh------eeeEEECCCccEEEEeec----ccceeeeeCCCcchhhhhhhccceeEEEEeccCc-------------
Confidence 77654 899999999999999875 5678899999999999999999999999999886
Q ss_pred ccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 287 APVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 287 ~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
++|++|+.|.++++||+++.+....+. +|...|.++.|+|||+.+++|+.|..+++|.
T Consensus 422 --------------------RLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 422 --------------------RLLVSGSKDSTLKVWDVRTKKLKQDLP-GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------------cEEEEcCCCceEEEEEeeeeeecccCC-CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 899999999999999999998888776 5899999999999999999999999999995
No 5
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.1e-38 Score=316.42 Aligned_cols=283 Identities=24% Similarity=0.334 Sum_probs=260.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEE
Q 040062 63 RDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSIL 140 (689)
Q Consensus 63 ~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~L 140 (689)
.+-..+|..+.|+.|++.|++|+.+|.+++|+.... ..+..|.+|...|.++.|+|. +..|
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~-----------------~~~~~l~gH~~~v~~~~fhP~~~~~~l 234 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC-----------------NLLQTLRGHTSRVGAAVFHPVDSDLNL 234 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCc-----------------ceeEEEeccccceeeEEEccCCCccce
Confidence 356678999999999999999999999999998876 688999999999999999997 5589
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 141 ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 141 asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
++|+.||++++|++.+...+..+.+|...|..++|+|+|++|+|++.|.+-++||++++..+...++|... +.+
T Consensus 235 at~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~------v~~ 308 (459)
T KOG0272|consen 235 ATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKG------VFS 308 (459)
T ss_pred eeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccc------cce
Confidence 99999999999999999999999999999999999999999999999999999999999999888888665 899
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
++|.+||..+++++- +..-++|+.++..+.+.+.+|..+|..+.|+|+|
T Consensus 309 iaf~~DGSL~~tGGl----D~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNG--------------------------- 357 (459)
T KOG0272|consen 309 IAFQPDGSLAATGGL----DSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNG--------------------------- 357 (459)
T ss_pred eEecCCCceeeccCc----cchhheeecccCcEEEEecccccceeeEeECCCc---------------------------
Confidence 999999999999865 4566799999999999999999999999999998
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEEEEeeccccccccChHH
Q 040062 301 KESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVANFHFEVKELGHRLSDAE 379 (689)
Q Consensus 301 ~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~ 379 (689)
..||+|+.|++++|||++..+.+..+. .|..-|+.+.|+| .|++|++++.|++++||.-.+..+...+
T Consensus 358 ------y~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL---- 426 (459)
T KOG0272|consen 358 ------YHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL---- 426 (459)
T ss_pred ------eEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh----
Confidence 689999999999999999999988776 5899999999999 7899999999999999998887766433
Q ss_pred HHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 380 LDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 380 ~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
.+|.+.|.++..++|+.+|++++.|.++ |.+
T Consensus 427 ---------aGHe~kV~s~Dis~d~~~i~t~s~DRT~--KLW 457 (459)
T KOG0272|consen 427 ---------AGHEGKVISLDISPDSQAIATSSFDRTI--KLW 457 (459)
T ss_pred ---------cCCccceEEEEeccCCceEEEeccCcee--eec
Confidence 3588899999999999999999999998 554
No 6
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2.4e-36 Score=286.81 Aligned_cols=289 Identities=23% Similarity=0.291 Sum_probs=253.3
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
....+|. ..|++++|++|.++|++++.||.+.|||.-+ ....+.+.-....|..++|+|.|+++|.|+
T Consensus 49 r~LkGH~-~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~T-----------tnK~haipl~s~WVMtCA~sPSg~~VAcGG 116 (343)
T KOG0286|consen 49 RTLKGHL-NKIYAMDWSTDSRRIVSASQDGKLIVWDSFT-----------TNKVHAIPLPSSWVMTCAYSPSGNFVACGG 116 (343)
T ss_pred EEecccc-cceeeeEecCCcCeEEeeccCCeEEEEEccc-----------ccceeEEecCceeEEEEEECCCCCeEEecC
Confidence 3445788 5999999999999999999999999999887 455666666788999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|....||++.+... ..+-...+.+.+|+..+.|+.|-. ...|++++.|.++.+||+++++.+..|.+
T Consensus 117 LdN~Csiy~ls~~d~-----------~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~G 184 (343)
T KOG0286|consen 117 LDNKCSIYPLSTRDA-----------EGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHG 184 (343)
T ss_pred cCceeEEEecccccc-----------cccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecC
Confidence 999999999985411 112257788999999999999986 55789999999999999999999999999
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 166 HSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 166 h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
|.+.|.++.++| +++.|++|+-|+..++||++.+.+.+.
T Consensus 185 H~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt---------------------------------------- 224 (343)
T KOG0286|consen 185 HTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT---------------------------------------- 224 (343)
T ss_pred CcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe----------------------------------------
Confidence 999999999999 999999999999999999988765544
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
|.+|+..|..+.|.|++ .-+++|+.|++.++||++
T Consensus 225 ------------F~ghesDINsv~ffP~G---------------------------------~afatGSDD~tcRlyDlR 259 (343)
T KOG0286|consen 225 ------------FEGHESDINSVRFFPSG---------------------------------DAFATGSDDATCRLYDLR 259 (343)
T ss_pred ------------ecccccccceEEEccCC---------------------------------CeeeecCCCceeEEEeec
Confidence 45688889999999987 789999999999999999
Q ss_pred CCCceEEecccC-CCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 325 SPRPLFVAKHFF-TQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 325 ~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
..+.+..+.... ...|++++||-.|++|++|..|.++.+||.-.++.... ..+|+++|+++..+||
T Consensus 260 aD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~-------------L~GHeNRvScl~~s~D 326 (343)
T KOG0286|consen 260 ADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGV-------------LAGHENRVSCLGVSPD 326 (343)
T ss_pred CCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEE-------------eeccCCeeEEEEECCC
Confidence 999888876432 35799999999999999999999999999877766532 3358999999999999
Q ss_pred hhhhHhhccccce
Q 040062 404 QLLLEAASAKETT 416 (689)
Q Consensus 404 g~~Las~s~DG~v 416 (689)
|..|++||.|..+
T Consensus 327 G~av~TgSWDs~l 339 (343)
T KOG0286|consen 327 GMAVATGSWDSTL 339 (343)
T ss_pred CcEEEecchhHhe
Confidence 9999999999998
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=8.2e-36 Score=277.03 Aligned_cols=292 Identities=21% Similarity=0.297 Sum_probs=249.8
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
-+|+++|.|.+||+|...+ +.+.++++...+.|+.+...|++++||+++. ..|++||+.+++.
T Consensus 11 viLvsA~YDhTIRfWqa~t-----------G~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np----- 73 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALT-----------GICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNP----- 73 (311)
T ss_pred eEEEeccCcceeeeeehhc-----------CeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCC-----
Confidence 4799999999999999998 9999999988889999999999999999876 5799999998753
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ 185 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 185 (689)
..+.++.+|...|+.+.|..||+.+++|+.||+++|||++...+.+.++ |.++|.++..+|+...|+++
T Consensus 74 ----------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQteLis~ 142 (311)
T KOG0315|consen 74 ----------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQTELISG 142 (311)
T ss_pred ----------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCcceEEee
Confidence 4788999999999999999999999999999999999999977777777 88999999999999999999
Q ss_pred eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec------CCceeeeeecC
Q 040062 186 SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER------GEWAATFDFLG 259 (689)
Q Consensus 186 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~------~~~~~~~~l~~ 259 (689)
..+|.|++||+.+..+...+.... ..+++++...|||.++++++. ....++|+. ........+..
T Consensus 143 dqsg~irvWDl~~~~c~~~liPe~-----~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~a 213 (311)
T KOG0315|consen 143 DQSGNIRVWDLGENSCTHELIPED-----DTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQA 213 (311)
T ss_pred cCCCcEEEEEccCCccccccCCCC-----CcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheec
Confidence 999999999998876665554322 356999999999999999876 445566654 23445556889
Q ss_pred CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCC
Q 040062 260 HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS 339 (689)
Q Consensus 260 h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~ 339 (689)
|.+.+..+.++|+. ++||+++.|.+++||++++.-.+......|...
T Consensus 214 h~~~il~C~lSPd~---------------------------------k~lat~ssdktv~iwn~~~~~kle~~l~gh~rW 260 (311)
T KOG0315|consen 214 HNGHILRCLLSPDV---------------------------------KYLATCSSDKTVKIWNTDDFFKLELVLTGHQRW 260 (311)
T ss_pred ccceEEEEEECCCC---------------------------------cEEEeecCCceEEEEecCCceeeEEEeecCCce
Confidence 99999999999987 899999999999999999883344444568899
Q ss_pred eEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeec
Q 040062 340 VVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAE 400 (689)
Q Consensus 340 V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~ 400 (689)
+.+.+||.||+||++++.|+.+++|+++.++.. ..|.+|.....+++.
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v-------------~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEV-------------RQYQGHHKAAVCVAL 308 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCcee-------------eecCCcccccEEEEe
Confidence 999999999999999999999999999988765 445556555555554
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-35 Score=278.07 Aligned_cols=294 Identities=21% Similarity=0.289 Sum_probs=252.2
Q ss_pred cCceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
+-...+|. ..|+.++..+.+ ..|++++.|..+.+|++... +...+..++.+.+|...|..+..++||++.++
T Consensus 8 ~~tl~gh~-d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS 80 (315)
T KOG0279|consen 8 RGTLEGHT-DWVTALAIKIKNSDILVSASRDKTIIVWKLTSD------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALS 80 (315)
T ss_pred eeeecCCC-ceEEEEEeecCCCceEEEcccceEEEEEEeccC------ccccCceeeeeeccceEecceEEccCCceEEe
Confidence 34456788 599999999974 68899999999999999863 34458889999999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
++.|+++++||+.++ +..+.|.+|...|.+++|++|++.+++|+.|.+|++|++.........
T Consensus 81 ~swD~~lrlWDl~~g-----------------~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~ 143 (315)
T KOG0279|consen 81 ASWDGTLRLWDLATG-----------------ESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIH 143 (315)
T ss_pred ccccceEEEEEecCC-----------------cEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEe
Confidence 999999999999998 688899999999999999999999999999999999999665544444
Q ss_pred ecC-CCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 164 RGH-SSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 164 ~~h-~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
... ...|.|++|+|+ ..+|++++.|++|++||+++.+....+.++.. +++.+.+||||...+.++. .
T Consensus 144 ~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~------~v~t~~vSpDGslcasGgk----d 213 (315)
T KOG0279|consen 144 EDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG------YVNTVTVSPDGSLCASGGK----D 213 (315)
T ss_pred cCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc------cEEEEEECCCCCEEecCCC----C
Confidence 432 789999999997 67999999999999999999999888887644 4999999999999998654 5
Q ss_pred cccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 241 HSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
..+.+|+..+.+..+. .+|...|.+++|+|+ ++.++...+..|+|
T Consensus 214 g~~~LwdL~~~k~lys-l~a~~~v~sl~fspn----------------------------------rywL~~at~~sIkI 258 (315)
T KOG0279|consen 214 GEAMLWDLNEGKNLYS-LEAFDIVNSLCFSPN----------------------------------RYWLCAATATSIKI 258 (315)
T ss_pred ceEEEEEccCCceeEe-ccCCCeEeeEEecCC----------------------------------ceeEeeccCCceEE
Confidence 6777999988888554 468899999999999 46777777778999
Q ss_pred EeCCCCCceEEecccCC--------CCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 321 WTTASPRPLFVAKHFFT--------QSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 321 wd~~~~~~~~~~~~~h~--------~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
||+.++..+..+..... -...+++|++||+.|++|..|+.|++|.+.
T Consensus 259 wdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 259 WDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 99999988776553221 235778999999999999999999999874
No 9
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=9.8e-36 Score=290.55 Aligned_cols=327 Identities=21% Similarity=0.336 Sum_probs=270.4
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..|..|. .+|++++.+|+.++++|||.|..-.||++.+ +..+..+.+|...|+|+.|+.+|.|||+|+
T Consensus 58 ~tF~~H~-~svFavsl~P~~~l~aTGGgDD~AflW~~~~-----------ge~~~eltgHKDSVt~~~FshdgtlLATGd 125 (399)
T KOG0296|consen 58 VTFDKHT-DSVFAVSLHPNNNLVATGGGDDLAFLWDIST-----------GEFAGELTGHKDSVTCCSFSHDGTLLATGD 125 (399)
T ss_pred eehhhcC-CceEEEEeCCCCceEEecCCCceEEEEEccC-----------CcceeEecCCCCceEEEEEccCceEEEecC
Confidence 4677899 6999999999999999999999999999997 778999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.+|.|+||+..++ .....+...-..|.-|.|+|.+.+|+.|+.||.|.+|.+.++...+.+.+
T Consensus 126 msG~v~v~~~stg-----------------~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G 188 (399)
T KOG0296|consen 126 MSGKVLVFKVSTG-----------------GEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG 188 (399)
T ss_pred CCccEEEEEcccC-----------------ceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC
Confidence 9999999999988 34444545667789999999999999999999999999999889999999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
|+.++++=.|.|+|+.++++..||+|++|+..+++++..+..... ....++.++..+..++.++... ...+
T Consensus 189 h~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~-----~~~~~~~~~~~~~~~~~g~~e~----~~~~ 259 (399)
T KOG0296|consen 189 HNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG-----LELPCISLNLAGSTLTKGNSEG----VACG 259 (399)
T ss_pred CCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc-----CcCCccccccccceeEeccCCc----cEEE
Confidence 999999999999999999999999999999999999888774321 1245566666777666665422 1222
Q ss_pred eecCCceeeee--------ecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 246 LERGEWAATFD--------FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 246 ~~~~~~~~~~~--------l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
.+....+.... ...+...+.++.|.|.. ..-.+.|+|+-||+
T Consensus 260 ~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~s------------------------------s~lpL~A~G~vdG~ 309 (399)
T KOG0296|consen 260 VNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSS------------------------------SKLPLAACGSVDGT 309 (399)
T ss_pred EccccceEEEecCCCCccccccchhhhhhhhhcccc------------------------------cccchhhcccccce
Confidence 22222222221 12344455555555442 22378999999999
Q ss_pred EEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceee
Q 040062 318 ITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLAN 397 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~ 397 (689)
|.|||+...++...+. |...|+.+.|-+ ..+|++++.||.|+.||.++|++. ..|.+|...|.+
T Consensus 310 i~iyD~a~~~~R~~c~--he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~-------------~~y~GH~~~Il~ 373 (399)
T KOG0296|consen 310 IAIYDLAASTLRHICE--HEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLK-------------FTYTGHQMGILD 373 (399)
T ss_pred EEEEecccchhheecc--CCCceEEEEEcC-cchheeeccCceEEeeeccccceE-------------EEEecCchheeE
Confidence 9999999888777654 688899999999 789999999999999999999887 566678888999
Q ss_pred eecCchhhhhHhhccccce
Q 040062 398 LAETPAQLLLEAASAKETT 416 (689)
Q Consensus 398 l~~Spdg~~Las~s~DG~v 416 (689)
++.+|+.++++++|.|++.
T Consensus 374 f~ls~~~~~vvT~s~D~~a 392 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTA 392 (399)
T ss_pred EEEcCCCcEEEEecCCCeE
Confidence 9999999999999999998
No 10
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=7.4e-37 Score=301.91 Aligned_cols=282 Identities=24% Similarity=0.395 Sum_probs=258.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.+|..+.|.|+|++|++|+..|.+.+|+... ......++.|...|.++.|+++|.+++||+.+|.|++|
T Consensus 97 c~V~~v~WtPeGRRLltgs~SGEFtLWNg~~-----------fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyW 165 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS-----------FNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYW 165 (464)
T ss_pred cceeeEEEcCCCceeEeecccccEEEecCce-----------eeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEec
Confidence 4799999999999999999999999999865 44455678899999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
+..-+ .++.+..|. ..|++++|+|+.+.|++++.||+|+|||....+....+++|.-.|++
T Consensus 166 qpnmn------------------nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVks 227 (464)
T KOG0284|consen 166 QPNMN------------------NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKS 227 (464)
T ss_pred ccchh------------------hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcce
Confidence 98654 344444554 89999999999999999999999999999999998999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
+.|+|.-.+|++++.|..|++||.+++.++.++..+... |..+.|++++++|++++. +..+.+++.+..+
T Consensus 228 vdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKnt------Vl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mk 297 (464)
T KOG0284|consen 228 VDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNT------VLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMK 297 (464)
T ss_pred eccCCccceeEEccCCceeEeecCCCcchhhhhhhccce------EEEEEEcCCCCeeEEccC----CceEEEEehhHhH
Confidence 999999999999999999999999999999999888665 999999999999999877 4577899988888
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
..+.+.+|...|.++.|+|-. ..+|.+|+.||.|..|.+...+++..+
T Consensus 298 El~~~r~Hkkdv~~~~WhP~~--------------------------------~~lftsgg~Dgsvvh~~v~~~~p~~~i 345 (464)
T KOG0284|consen 298 ELFTYRGHKKDVTSLTWHPLN--------------------------------ESLFTSGGSDGSVVHWVVGLEEPLGEI 345 (464)
T ss_pred HHHHhhcchhhheeecccccc--------------------------------ccceeeccCCCceEEEeccccccccCC
Confidence 889999999999999999974 479999999999999999988999999
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
...|...|.+|+|+|-|..|++|+.|.++++|.-
T Consensus 346 ~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 346 PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred CcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 9999999999999999999999999999999974
No 11
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3.1e-35 Score=295.33 Aligned_cols=340 Identities=23% Similarity=0.363 Sum_probs=285.4
Q ss_pred ceeeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec----CCCCcEEEEEEcCCCCEE
Q 040062 7 SWVRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR----DHFGSVNCVRWAKHGRYI 81 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~----~h~~~V~~v~fspdg~~L 81 (689)
..+.|. .+|++++|+|-.. .|++|+.|-..++|++.......... ...+....+. ..+..|++++|+.+|.+|
T Consensus 173 kvl~~~-~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q-~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L 250 (524)
T KOG0273|consen 173 KVLRHE-SEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQ-LVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL 250 (524)
T ss_pred eeccCC-CceEEEecCchhhhhhhccCCccceeeeeehhhccccchh-hhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence 456688 7999999999776 89999999999999997411000000 0000000011 123579999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
|+|+.||.++||+.... .+.++..|.++|.+|.|+.+|.||++++.|+++.+||..+++...
T Consensus 251 atG~~~G~~riw~~~G~------------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q 312 (524)
T KOG0273|consen 251 ATGSEDGEARIWNKDGN------------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ 312 (524)
T ss_pred EEeecCcEEEEEecCch------------------hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence 99999999999998764 677888899999999999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
.+.-|..+-..+.|-. ..-|++++.|+.|+++.+....+..++.+|... |..+.|.|.|..|++++. +.
T Consensus 313 ~f~~~s~~~lDVdW~~-~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~------V~alk~n~tg~LLaS~Sd----D~ 381 (524)
T KOG0273|consen 313 QFEFHSAPALDVDWQS-NDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGE------VNALKWNPTGSLLASCSD----DG 381 (524)
T ss_pred eeeeccCCccceEEec-CceEeecCCCceEEEEEecCCCcceeeecccCc------eEEEEECCCCceEEEecC----CC
Confidence 9998988877788864 456889999999999999999999999988766 999999999999999987 46
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.+.+|..+.-.....+..|...|+.+.|+|.+- ..+. ...+..+++++.|++|++|
T Consensus 382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~--------------v~~n----------~~~~~~l~sas~dstV~lw 437 (524)
T KOG0273|consen 382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGP--------------VTSN----------PNMNLMLASASFDSTVKLW 437 (524)
T ss_pred eeEeeecCCCcchhhhhhhccceeeEeecCCCC--------------ccCC----------CcCCceEEEeecCCeEEEE
Confidence 677999998888889999999999999999972 1111 1245789999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET 401 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S 401 (689)
|+..+.++..+. .|..+|++++|+|+|+||++|+.||.|.+|+..++++.+. |++. +.|..++|+
T Consensus 438 dv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s-------------~~~~-~~Ifel~Wn 502 (524)
T KOG0273|consen 438 DVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKS-------------YQGT-GGIFELCWN 502 (524)
T ss_pred EccCCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEe-------------ecCC-CeEEEEEEc
Confidence 999999999975 4899999999999999999999999999999999988743 3322 349999999
Q ss_pred chhhhhHhhccccce
Q 040062 402 PAQLLLEAASAKETT 416 (689)
Q Consensus 402 pdg~~Las~s~DG~v 416 (689)
.+|.+|..+-.||.+
T Consensus 503 ~~G~kl~~~~sd~~v 517 (524)
T KOG0273|consen 503 AAGDKLGACASDGSV 517 (524)
T ss_pred CCCCEEEEEecCCCc
Confidence 999999999999988
No 12
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=9.1e-35 Score=274.62 Aligned_cols=304 Identities=22% Similarity=0.274 Sum_probs=256.0
Q ss_pred ceeeeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 56 QRLLATLRDHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
..+..++.+|.+.|+.++..+. ...|++++.|..+.+|++... +......++.+.+|...|.++..+
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d------------d~~~G~~~r~~~GHsH~v~dv~~s 72 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD------------DIKYGVPVRRLTGHSHFVSDVVLS 72 (315)
T ss_pred heeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC------------ccccCceeeeeeccceEecceEEc
Confidence 4566789999999999999985 568999999999999999875 222336789999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
+||++.++++.|+++++||+.+++..+.|.+|...|.+++|++|++.|++|+.|.+|++|++... +..++.... .
T Consensus 73 ~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~----~ 147 (315)
T KOG0279|consen 73 SDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDS----H 147 (315)
T ss_pred cCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCC----C
Confidence 99999999999999999999999999999999999999999999999999999999999998644 333333321 1
Q ss_pred cccEEEEEEcCC--CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 215 STFFRRLGWSPC--GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 215 ~~~i~~l~~spd--g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
..+|.++.|+|. ..+|+.++. +..+++|+....+....+.+|.+.++.+.++|+|
T Consensus 148 ~~WVscvrfsP~~~~p~Ivs~s~----DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDG------------------- 204 (315)
T KOG0279|consen 148 REWVSCVRFSPNESNPIIVSASW----DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDG------------------- 204 (315)
T ss_pred cCcEEEEEEcCCCCCcEEEEccC----CceEEEEccCCcchhhccccccccEEEEEECCCC-------------------
Confidence 557999999998 566666655 5678899999999999999999999999999997
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
.++++|+.||.+.+||++.++.+..+. |...|.+++|+|+..+|+.+. +-.|+|||++++...
T Consensus 205 --------------slcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v 267 (315)
T KOG0279|consen 205 --------------SLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVV 267 (315)
T ss_pred --------------CEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCceeEeecc-CCceEEEeccchhhh
Confidence 899999999999999999999987764 588999999999988777766 556999999999887
Q ss_pred cccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 373 HRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 373 ~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
..+..+..... .+ ...-...+++||+||..|.+|-.|+.| ++.+
T Consensus 268 ~~l~~d~~g~s--~~--~~~~~clslaws~dG~tLf~g~td~~i--rv~q 311 (315)
T KOG0279|consen 268 EELKLDGIGPS--SK--AGDPICLSLAWSADGQTLFAGYTDNVI--RVWQ 311 (315)
T ss_pred hhccccccccc--cc--cCCcEEEEEEEcCCCcEEEeeecCCcE--EEEE
Confidence 76665433220 11 112245789999999999999999999 5443
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=5.7e-34 Score=268.14 Aligned_cols=290 Identities=26% Similarity=0.465 Sum_probs=243.0
Q ss_pred eeeecCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee-cCCCCcEEEEEEcCCCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQPG-ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL-RDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~spd-g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..+|.+ .|..++|+|- |..||+|+.|..|+||+... . ....+...+ .+|...|..++|+|.|+|||+++
T Consensus 10 ~~gh~~-r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~-------~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS 80 (312)
T KOG0645|consen 10 LSGHKD-RVWSVAWHPGKGVILASCGTDKAVRIWSTSS-G-------DSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS 80 (312)
T ss_pred ecCCCC-cEEEEEeccCCceEEEeecCCceEEEEecCC-C-------CcEEEEEeccccchheeeeeeecCCCcEEEEee
Confidence 346774 9999999998 89999999999999999874 1 113444444 37999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CeEEEE
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---GICTAV 162 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---~~~~~~ 162 (689)
.|.++.||.-..+ .|+++..+.+|.+.|.+++|+++|++||+++.|..|.||.+.. .++...
T Consensus 81 FD~t~~Iw~k~~~---------------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aV 145 (312)
T KOG0645|consen 81 FDATVVIWKKEDG---------------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAV 145 (312)
T ss_pred ccceEEEeecCCC---------------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEee
Confidence 9999999987654 3588999999999999999999999999999999999999874 577888
Q ss_pred EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+..|...|+.+.|+|...+|++++.|.+|++|+-..
T Consensus 146 L~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-------------------------------------------- 181 (312)
T KOG0645|consen 146 LQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-------------------------------------------- 181 (312)
T ss_pred eccccccccEEEEcCCcceeEEeccCCeEEEEeecC--------------------------------------------
Confidence 999999999999999999999999999999998531
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
...|.+...+.+|...|.++.|++.+ ..|++++.|++++||.
T Consensus 182 -----dddW~c~~tl~g~~~TVW~~~F~~~G---------------------------------~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 182 -----DDDWECVQTLDGHENTVWSLAFDNIG---------------------------------SRLVSCSDDGTVSIWR 223 (312)
T ss_pred -----CCCeeEEEEecCccceEEEEEecCCC---------------------------------ceEEEecCCcceEeee
Confidence 13455666788899999999999987 7899999999999998
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
..+ .+...|...++.+.|. ...|++++.|+.|++|.-...- .+.. -.++....+.|...|+++.|+|
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~-----d~p~-~~l~~~~~~aHe~dVNsV~w~p 290 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSP-----DEPS-WNLLAKKEGAHEVDVNSVQWNP 290 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCC-----CCch-HHHHHhhhcccccccceEEEcC
Confidence 662 3445578889999998 4579999999999999866321 1111 2233356677888999999999
Q ss_pred h-hhhhHhhccccce
Q 040062 403 A-QLLLEAASAKETT 416 (689)
Q Consensus 403 d-g~~Las~s~DG~v 416 (689)
. ..+|+++++||++
T Consensus 291 ~~~~~L~s~~DDG~v 305 (312)
T KOG0645|consen 291 KVSNRLASGGDDGIV 305 (312)
T ss_pred CCCCceeecCCCceE
Confidence 5 7899999999999
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.2e-33 Score=287.19 Aligned_cols=359 Identities=23% Similarity=0.327 Sum_probs=267.7
Q ss_pred ceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 7 SWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
++.+|. ..|++++|-|.. -+++||+.|+.|.+|.=.. .+.-.+++.|..-|+|++|+|||.+||+.+
T Consensus 142 ei~GhS-r~ins~~~KpsRPfRi~T~sdDn~v~ffeGPP-----------FKFk~s~r~HskFV~~VRysPDG~~Fat~g 209 (603)
T KOG0318|consen 142 EITGHS-RRINSVDFKPSRPFRIATGSDDNTVAFFEGPP-----------FKFKSSFREHSKFVNCVRYSPDGSRFATAG 209 (603)
T ss_pred eeeccc-eeEeeeeccCCCceEEEeccCCCeEEEeeCCC-----------eeeeecccccccceeeEEECCCCCeEEEec
Confidence 456788 699999999977 5799999999999998765 677888999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR---GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
.||.|.+||=.++ +.+..+. +|.+.|.+|+|+||++.|++++.|.+++|||+.+.+++.+
T Consensus 210 sDgki~iyDGktg-----------------e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t 272 (603)
T KOG0318|consen 210 SDGKIYIYDGKTG-----------------EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVST 272 (603)
T ss_pred CCccEEEEcCCCc-----------------cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEE
Confidence 9999999999988 4555555 8999999999999999999999999999999987654442
Q ss_pred -------------------------------------------EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 163 -------------------------------------------LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 163 -------------------------------------------l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
+.+|...|++++.++++++|++++.||.|.-|+..++
T Consensus 273 ~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g 352 (603)
T KOG0318|consen 273 WPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSG 352 (603)
T ss_pred eecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCc
Confidence 3589999999999999999999999999999999877
Q ss_pred cceeec-cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC--ceeeeeecCCCCCEEEEEEcCCcccc
Q 040062 200 SLAHRT-DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE--WAATFDFLGHNAPIIVVKFNHSMFRR 276 (689)
Q Consensus 200 ~~~~~~-~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~h~~~v~~v~fsp~~~~~ 276 (689)
..-+.. ..| ...|.++.-+..+.++.++..+ .+++.+... ......+.-...|. +++..+++...
T Consensus 353 ~~~~~~g~~h------~nqI~~~~~~~~~~~~t~g~Dd-----~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~a 420 (603)
T KOG0318|consen 353 TSDRLAGKGH------TNQIKGMAASESGELFTIGWDD-----TLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTA 420 (603)
T ss_pred cccccccccc------cceEEEEeecCCCcEEEEecCC-----eEEEEecccCcccccceeecCCCce-eEEEcCCCCEE
Confidence 655433 222 3347788777767666665332 122221100 00000000011122 34444332111
Q ss_pred cccccc---------ccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE-ecccCCCCeEEEEEc
Q 040062 277 NSASSQ---------EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV-AKHFFTQSVVDLSWS 346 (689)
Q Consensus 277 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s 346 (689)
...-.. ....... +........++++..+++|++|+.|+||.+........ ....|...|++++||
T Consensus 421 vv~~~~~iv~l~~~~~~~~~~~----~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS 496 (603)
T KOG0318|consen 421 VVACISDIVLLQDQTKVSSIPI----GYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS 496 (603)
T ss_pred EEEecCcEEEEecCCcceeecc----ccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence 111111 0111111 11122234477889999999999999999987654332 344689999999999
Q ss_pred cCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 347 PDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 347 pdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
||+.||++|...+.+.+||+++++... .+++-|..+|.+++|||+..++|+||-|-.|-...|.
T Consensus 497 pd~~yla~~Da~rkvv~yd~~s~~~~~------------~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 497 PDGAYLAAGDASRKVVLYDVASREVKT------------NRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVK 560 (603)
T ss_pred CCCcEEEEeccCCcEEEEEcccCceec------------ceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEcc
Confidence 999999999999999999999887622 5566688899999999999999999999999555443
No 15
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=5.7e-34 Score=300.17 Aligned_cols=342 Identities=18% Similarity=0.305 Sum_probs=290.9
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
+..|+...+..|+|.+||+.-..||+|-..|...+|.+.. ..+++.+.-....|..+.|+..|.+||.|
T Consensus 257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~-----------f~lih~LSis~~~I~t~~~N~tGDWiA~g 325 (893)
T KOG0291|consen 257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD-----------FNLIHSLSISDQKILTVSFNSTGDWIAFG 325 (893)
T ss_pred EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC-----------ceEEEEeecccceeeEEEecccCCEEEEc
Confidence 3455555557899999999999999999999999999987 88999998888899999999999999998
Q ss_pred eCC-CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 85 SDD-QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 85 s~D-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
+.. |.+.||+.++. ..+...++|...+.+++++|||+++|+|+.||.|+|||..++-|+.++
T Consensus 326 ~~klgQLlVweWqsE-----------------sYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 326 CSKLGQLLVWEWQSE-----------------SYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred CCccceEEEEEeecc-----------------ceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 765 89999999987 577778899999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
..|++.|+++.|+..|+.+++.+-||+|+.||+.....-+++..+.. ..+.+++..|.|..+.++..+ ...+
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p-----~QfscvavD~sGelV~AG~~d---~F~I 460 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEP-----IQFSCVAVDPSGELVCAGAQD---SFEI 460 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCc-----eeeeEEEEcCCCCEEEeeccc---eEEE
Confidence 99999999999999999999999999999999999998888876643 347899999999999887653 4677
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.+|...+.+..-.+.||.+||.+++|+|.+ ..|++++.|.+|++||+
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~~~---------------------------------~~LaS~SWDkTVRiW~i 507 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSPDG---------------------------------SLLASGSWDKTVRIWDI 507 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEcccc---------------------------------CeEEeccccceEEEEEe
Confidence 899999998888899999999999999987 89999999999999998
Q ss_pred CCCC-ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHH-------HHHHHhccCCccCce
Q 040062 324 ASPR-PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAEL-------DELKRSRYGDVRGRL 395 (689)
Q Consensus 324 ~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~-------~~~~~~~~g~~~~~I 395 (689)
-... .+..+. +...+..++|+|||+.|++++.||.|.+||.+.+.....+..... .......-.......
T Consensus 508 f~s~~~vEtl~--i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F 585 (893)
T KOG0291|consen 508 FSSSGTVETLE--IRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF 585 (893)
T ss_pred eccCceeeeEe--eccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce
Confidence 6653 333333 356799999999999999999999999999987765544332110 000001111223468
Q ss_pred eeeecCchhhhhHhhcccccee
Q 040062 396 ANLAETPAQLLLEAASAKETTT 417 (689)
Q Consensus 396 ~~l~~Spdg~~Las~s~DG~v~ 417 (689)
+.+++|+||..|.+|+....|.
T Consensus 586 tti~ySaDG~~IlAgG~sn~iC 607 (893)
T KOG0291|consen 586 TTICYSADGKCILAGGESNSIC 607 (893)
T ss_pred EEEEEcCCCCEEEecCCcccEE
Confidence 9999999999999999999883
No 16
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=7.6e-34 Score=285.30 Aligned_cols=279 Identities=27% Similarity=0.514 Sum_probs=255.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|++++|+.+|.+||+|..||.++||+.. +.++.+|..|.++|.++.|+.+|.||++++.|+++.+|
T Consensus 236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~------------G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilw 303 (524)
T KOG0273|consen 236 KDVTSLDWNNDGTLLATGSEDGEARIWNKD------------GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILW 303 (524)
T ss_pred CCcceEEecCCCCeEEEeecCcEEEEEecC------------chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEE
Confidence 479999999999999999999999999987 68899999999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
|..++ ...+.+.-|..+-.++.|- +...+++++.|+.|+|+-+....++.++.+|.+.|.+|
T Consensus 304 d~~~g-----------------~~~q~f~~~s~~~lDVdW~-~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~al 365 (524)
T KOG0273|consen 304 DAHTG-----------------TVKQQFEFHSAPALDVDWQ-SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNAL 365 (524)
T ss_pred eccCc-----------------eEEEeeeeccCCccceEEe-cCceEeecCCCceEEEEEecCCCcceeeecccCceEEE
Confidence 99888 6777788888888899997 45579999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC---------CeEEEecCCCCCccccc
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG---------HFITTTHGFQKPRHSAP 244 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg---------~~l~~~~~~~~~~~~~~ 244 (689)
.|+|.+.+|+++++|++++||..........+..|... |..+.|+|.| ..++++.. ...+.
T Consensus 366 k~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hske------i~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~ 435 (524)
T KOG0273|consen 366 KWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKE------IYTIKWSPTGPVTSNPNMNLMLASASF----DSTVK 435 (524)
T ss_pred EECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccc------eeeEeecCCCCccCCCcCCceEEEeec----CCeEE
Confidence 99999999999999999999999988888888877554 8899999975 34555544 46778
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
+|+.....+...|..|..+|+.++|+|++ .++|+|+.||.|.+|+++
T Consensus 436 lwdv~~gv~i~~f~kH~~pVysvafS~~g---------------------------------~ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 436 LWDVESGVPIHTLMKHQEPVYSVAFSPNG---------------------------------RYLASGSLDGCVHIWSTK 482 (524)
T ss_pred EEEccCCceeEeeccCCCceEEEEecCCC---------------------------------cEEEecCCCCeeEecccc
Confidence 99999999999999999999999999997 899999999999999999
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+++.+..+.. ...|..|+|+-+|.+|.++-.||.+++.|+.
T Consensus 483 ~~~l~~s~~~--~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 483 TGKLVKSYQG--TGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred chheeEeecC--CCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 9999988875 6679999999999999999999999999974
No 17
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-35 Score=285.60 Aligned_cols=298 Identities=22% Similarity=0.336 Sum_probs=257.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
...+|. .+|+.+-|+|+-..+++++.|++|++||..+ +++...+++|...|..|+|+..|++||+++.
T Consensus 103 ~l~g~r-~~vt~v~~hp~~~~v~~as~d~tikv~D~~t-----------g~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs 170 (406)
T KOG0295|consen 103 KLAGHR-SSVTRVIFHPSEALVVSASEDATIKVFDTET-----------GELERSLRGHTDSVFDISFDASGKYLATCSS 170 (406)
T ss_pred hhhccc-cceeeeeeccCceEEEEecCCceEEEEEccc-----------hhhhhhhhccccceeEEEEecCccEEEecCC
Confidence 345677 7999999999999999999999999999998 8889999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|-.+.+||.+.. +++++.+.+|+..|.+++|-|.|.++++++.|.+|+.|++.++.++.++.+|
T Consensus 171 Dl~~~LWd~~~~----------------~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h 234 (406)
T KOG0295|consen 171 DLSAKLWDFDTF----------------FRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGH 234 (406)
T ss_pred ccchhheeHHHH----------------HHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCc
Confidence 999999998753 2577788899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|..+..+.||.++++++.|.+|++|-+.++++...+.
T Consensus 235 ~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR---------------------------------------- 274 (406)
T KOG0295|consen 235 SEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR---------------------------------------- 274 (406)
T ss_pred hHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh----------------------------------------
Confidence 9999999999999999999999999999998876655444
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
.|.-+|.+++|.|...... ... .......+.++.+++.|++|++||+.++
T Consensus 275 ------------~hEh~vEci~wap~~~~~~-i~~-----------------at~~~~~~~~l~s~SrDktIk~wdv~tg 324 (406)
T KOG0295|consen 275 ------------EHEHPVECIAWAPESSYPS-ISE-----------------ATGSTNGGQVLGSGSRDKTIKIWDVSTG 324 (406)
T ss_pred ------------ccccceEEEEecccccCcc-hhh-----------------ccCCCCCccEEEeecccceEEEEeccCC
Confidence 3555666666665532000 000 0000113479999999999999999999
Q ss_pred CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhh
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLL 406 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~ 406 (689)
.+++++. +|.+.|..++|+|.|+||+++.+|+++++||+++++....+. .|..-++++.|+.+..+
T Consensus 325 ~cL~tL~-ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~-------------ah~hfvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 325 MCLFTLV-GHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLE-------------AHEHFVTSLDFHKTAPY 390 (406)
T ss_pred eEEEEEe-cccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccC-------------CCcceeEEEecCCCCce
Confidence 9999986 589999999999999999999999999999999988776543 46667999999999999
Q ss_pred hHhhccccce
Q 040062 407 LEAASAKETT 416 (689)
Q Consensus 407 Las~s~DG~v 416 (689)
+++|+-|.++
T Consensus 391 VvTGsVdqt~ 400 (406)
T KOG0295|consen 391 VVTGSVDQTV 400 (406)
T ss_pred EEecccccee
Confidence 9999999988
No 18
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3.7e-35 Score=312.64 Aligned_cols=254 Identities=24% Similarity=0.370 Sum_probs=227.7
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCC-----------CC---------CCCCcccceeeeeecCCCCcEEEE
Q 040062 13 GMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVG-----------KN---------FENDESTQRLLATLRDHFGSVNCV 72 (689)
Q Consensus 13 g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~-----------~~---------~~~~~~~~~~~~~l~~h~~~V~~v 72 (689)
+..++|..|++|+++||.|-.|..|++|.+.... +. ...+........++.+|.++|..+
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~ 457 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGC 457 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeee
Confidence 3579999999999999999999999999988411 00 111333455667789999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 73 RWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152 (689)
Q Consensus 73 ~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vw 152 (689)
.|+|+.++|++|+.|++||+|.+++. ..+..+++|..+|+++.|+|.|-|+|+++.|++-++|
T Consensus 458 sFsPd~rfLlScSED~svRLWsl~t~-----------------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLW 520 (707)
T KOG0263|consen 458 SFSPDRRFLLSCSEDSSVRLWSLDTW-----------------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLW 520 (707)
T ss_pred eecccccceeeccCCcceeeeecccc-----------------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeee
Confidence 99999999999999999999999876 7888889999999999999999999999999999999
Q ss_pred EcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 153 NMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 153 d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
.......++.+.+|.+.|.|+.|+|+..|+++||.|.+||+||+.++..++.
T Consensus 521 s~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRi---------------------------- 572 (707)
T KOG0263|consen 521 STDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRI---------------------------- 572 (707)
T ss_pred ecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEE----------------------------
Confidence 9999999999999999999999999999999999999999999987665433
Q ss_pred ecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 233 THGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
|.||.++|.+++|+|.| .+|++|
T Consensus 573 ------------------------F~GH~~~V~al~~Sp~G---------------------------------r~LaSg 595 (707)
T KOG0263|consen 573 ------------------------FTGHKGPVTALAFSPCG---------------------------------RYLASG 595 (707)
T ss_pred ------------------------ecCCCCceEEEEEcCCC---------------------------------ceEeec
Confidence 45789999999999987 899999
Q ss_pred eCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 313 SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 313 s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
+.||.|.+||+.+++++..+.. |.+.|.+|.||.||..|++|+.|.+|++||+..-
T Consensus 596 ~ed~~I~iWDl~~~~~v~~l~~-Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSLVKQLKG-HTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred ccCCcEEEEEcCCCcchhhhhc-ccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999999999999988775 6999999999999999999999999999998753
No 19
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=9.8e-34 Score=275.23 Aligned_cols=284 Identities=24% Similarity=0.357 Sum_probs=255.7
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
+|.| .|.|+++.|..++|++|+.|++|+|||+.+ +++..++.+|-..|..+++|+--.||++++.|+.
T Consensus 149 gHlg-WVr~vavdP~n~wf~tgs~DrtikIwDlat-----------g~LkltltGhi~~vr~vavS~rHpYlFs~gedk~ 216 (460)
T KOG0285|consen 149 GHLG-WVRSVAVDPGNEWFATGSADRTIKIWDLAT-----------GQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ 216 (460)
T ss_pred hccc-eEEEEeeCCCceeEEecCCCceeEEEEccc-----------CeEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence 6885 999999999999999999999999999998 8999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
|+.||++.+ +.++.+.+|-..|.||+.+|.-..|++|+.|.+++|||+++...+..+.+|...
T Consensus 217 VKCwDLe~n-----------------kvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 217 VKCWDLEYN-----------------KVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred eEEEechhh-----------------hhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 999999988 788888999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
|..+.+.|....+++++.|++|++||++.++....+..+... +++++..|....+++++.++ +..|...
T Consensus 280 V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkks------vral~lhP~e~~fASas~dn-----ik~w~~p 348 (460)
T KOG0285|consen 280 VASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKS------VRALCLHPKENLFASASPDN-----IKQWKLP 348 (460)
T ss_pred ceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccce------eeEEecCCchhhhhccCCcc-----ceeccCC
Confidence 999999998889999999999999999999998888877655 89999999999999987643 4456666
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL 329 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~ 329 (689)
.......+.+|..-+.++..+.++ ++++|+.+|.|.+||.+++-..
T Consensus 349 ~g~f~~nlsgh~~iintl~~nsD~----------------------------------v~~~G~dng~~~fwdwksg~ny 394 (460)
T KOG0285|consen 349 EGEFLQNLSGHNAIINTLSVNSDG----------------------------------VLVSGGDNGSIMFWDWKSGHNY 394 (460)
T ss_pred ccchhhccccccceeeeeeeccCc----------------------------------eEEEcCCceEEEEEecCcCccc
Confidence 666666688999999999998884 8999999999999999988655
Q ss_pred EEecc-------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 330 FVAKH-------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 330 ~~~~~-------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+..+. .....|.+.+|...|..|++|..|.+|++|.-+
T Consensus 395 Q~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 395 QRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 43321 123568999999999999999999999999754
No 20
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=9.4e-33 Score=280.72 Aligned_cols=353 Identities=21% Similarity=0.256 Sum_probs=273.2
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec---CCCCcEEEEEEcCCCCEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR---DHFGSVNCVRWAKHGRYIA 82 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~fspdg~~La 82 (689)
..+-.|. .-|+|+.|+|||+++|+.+.||+|.|||=.+ ++.+..+. +|.+.|.++.|+||++.|+
T Consensus 184 ~s~r~Hs-kFV~~VRysPDG~~Fat~gsDgki~iyDGkt-----------ge~vg~l~~~~aHkGsIfalsWsPDs~~~~ 251 (603)
T KOG0318|consen 184 SSFREHS-KFVNCVRYSPDGSRFATAGSDGKIYIYDGKT-----------GEKVGELEDSDAHKGSIFALSWSPDSTQFL 251 (603)
T ss_pred ecccccc-cceeeEEECCCCCeEEEecCCccEEEEcCCC-----------ccEEEEecCCCCccccEEEEEECCCCceEE
Confidence 3444577 5899999999999999999999999999887 77777777 8999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCC--------------------------CcccceEEEEEecCCCCEEEEEEcCC
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPP--------------------------DIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~--------------------------~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
+++.|.+++|||+.+++...++..+... +.......+.+.+|...|++|..++|
T Consensus 252 T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d 331 (603)
T KOG0318|consen 252 TVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPD 331 (603)
T ss_pred EecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCC
Confidence 9999999999999998766665443321 11222356678899999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec--cCccc---
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT--DGHWA--- 210 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l-~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~--~~~~~--- 210 (689)
+++|++|+.||.|.-||..++..-+.. +.|...|.+++-+..+ .+++.+.|.++++.++......... ....+
T Consensus 332 ~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~-~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~ 410 (603)
T KOG0318|consen 332 GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESG-ELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKG 410 (603)
T ss_pred CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCC-cEEEEecCCeEEEEecccCcccccceeecCCCcee
Confidence 999999999999999999988776654 7799999999987544 5667778889999987432111110 00000
Q ss_pred ----------------------------ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCC
Q 040062 211 ----------------------------KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNA 262 (689)
Q Consensus 211 ----------------------------~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~ 262 (689)
...-.....+++++|+++.+++++.+.+ ..++-+..........+..|.+
T Consensus 411 lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk--vhvysl~g~~l~ee~~~~~h~a 488 (603)
T KOG0318|consen 411 LAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK--VHVYSLSGDELKEEAKLLEHRA 488 (603)
T ss_pred EEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce--EEEEEecCCcccceeeeecccC
Confidence 0000112467889999999999877554 2222233334455556788999
Q ss_pred CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEE
Q 040062 263 PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVD 342 (689)
Q Consensus 263 ~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 342 (689)
++++++|+|++ .+||+|...+.+.+||+.+.+........|...|.+
T Consensus 489 ~iT~vaySpd~---------------------------------~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~ 535 (603)
T KOG0318|consen 489 AITDVAYSPDG---------------------------------AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINC 535 (603)
T ss_pred CceEEEECCCC---------------------------------cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEE
Confidence 99999999997 899999999999999999988866666679999999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 343 LSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 343 l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
++|+|+..+||+|+.|-.|.||+++.-.-. ....++|...|+.+.|-.+. .|++.+.|-.| |.+
T Consensus 536 ~aWsP~n~~vATGSlDt~Viiysv~kP~~~------------i~iknAH~~gVn~v~wlde~-tvvSsG~Da~i--K~W 599 (603)
T KOG0318|consen 536 VAWSPNNKLVATGSLDTNVIIYSVKKPAKH------------IIIKNAHLGGVNSVAWLDES-TVVSSGQDANI--KVW 599 (603)
T ss_pred EEeCCCceEEEeccccceEEEEEccChhhh------------eEeccccccCceeEEEecCc-eEEeccCccee--EEe
Confidence 999999999999999999999998743211 13445677779999997654 46667777777 544
No 21
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=6.4e-32 Score=275.96 Aligned_cols=286 Identities=32% Similarity=0.533 Sum_probs=252.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. .+|++++|+|++++|++++.||.|++|++.. .+....+..|...+.++.|++++++|++++.
T Consensus 4 ~~~~h~-~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~-----------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 71 (289)
T cd00200 4 TLKGHT-GGVTCVAFSPDGKLLATGSGDGTIKVWDLET-----------GELLRTLKGHTGPVRDVAASADGTYLASGSS 71 (289)
T ss_pred HhcccC-CCEEEEEEcCCCCEEEEeecCcEEEEEEeeC-----------CCcEEEEecCCcceeEEEECCCCCEEEEEcC
Confidence 455788 6999999999999999999999999999986 4567778889999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|+.|++|++..+ +....+..|...|.++.|++++.++++++.|+.|.+||+.+++....+..|
T Consensus 72 ~~~i~i~~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 134 (289)
T cd00200 72 DKTIRLWDLETG-----------------ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134 (289)
T ss_pred CCeEEEEEcCcc-----------------cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccC
Confidence 999999999876 456667788889999999999888888888999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++|+|++.++++++.|+.|++||+++++....+..+.. .+.++.|+++++.+++++. ...+.+|
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~----~~~i~i~ 204 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG------EVNSVAFSPDGEKLLSSSS----DGTIKLW 204 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc------ccceEEECCCcCEEEEecC----CCcEEEE
Confidence 99999999999999999988899999999998887777764432 3889999999988888766 4567788
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
+.........+..|...+..+.|++++ .++++++.|+.|++||+.++
T Consensus 205 d~~~~~~~~~~~~~~~~i~~~~~~~~~---------------------------------~~~~~~~~~~~i~i~~~~~~ 251 (289)
T cd00200 205 DLSTGKCLGTLRGHENGVNSVAFSPDG---------------------------------YLLASGSEDGTIRVWDLRTG 251 (289)
T ss_pred ECCCCceecchhhcCCceEEEEEcCCC---------------------------------cEEEEEcCCCcEEEEEcCCc
Confidence 887777777777888999999999875 68888888999999999988
Q ss_pred CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+.+..+. .|...|.+++|++++.+|++++.||.|++|+
T Consensus 252 ~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 252 ECVQTLS-GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred eeEEEcc-ccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 8887776 5788899999999999999999999999996
No 22
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=299.55 Aligned_cols=295 Identities=27% Similarity=0.457 Sum_probs=254.0
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccce--eeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR--LLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
....|+...|.|+.|+++|++|++++.|+.+++|+... .+ .+..+.+|...|.+++|+|++++|+++
T Consensus 153 ~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~-----------~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~ 221 (456)
T KOG0266|consen 153 TLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEG-----------IKSNLLRELSGHTRGVSDVAFSPDGSYLLSG 221 (456)
T ss_pred eecccccCceEEEEEcCCCCeEEEccCCCcEEEeeccc-----------ccchhhccccccccceeeeEECCCCcEEEEe
Confidence 34455446899999999999999999999999999965 33 667778999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
+.|++|+|||+.... ..++++.+|...|++++|+|+++++++|+.|++|+|||+++++++..+.
T Consensus 222 s~D~tiriwd~~~~~----------------~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~ 285 (456)
T KOG0266|consen 222 SDDKTLRIWDLKDDG----------------RNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK 285 (456)
T ss_pred cCCceEEEeeccCCC----------------eEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee
Confidence 999999999993331 6889999999999999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc--ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS--LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+|.+.|.+++|++++++|++++.|+.|+|||+.++. +...+...... . .+..+.|+|++.+++++.. ...
T Consensus 286 ~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~---~-~~~~~~fsp~~~~ll~~~~----d~~ 357 (456)
T KOG0266|consen 286 GHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENS---A-PVTSVQFSPNGKYLLSASL----DRT 357 (456)
T ss_pred ccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCC---C-ceeEEEECCCCcEEEEecC----CCe
Confidence 999999999999999999999999999999999998 34555443322 1 4899999999999999876 457
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
+.+|+.........+.+|...+ .+.|++.. ...+.++++|+.|+.|++||
T Consensus 358 ~~~w~l~~~~~~~~~~~~~~~~-~~~~~~~~-----------------------------~~~~~~i~sg~~d~~v~~~~ 407 (456)
T KOG0266|consen 358 LKLWDLRSGKSVGTYTGHSNLV-RCIFSPTL-----------------------------STGGKLIYSGSEDGSVYVWD 407 (456)
T ss_pred EEEEEccCCcceeeecccCCcc-eeEecccc-----------------------------cCCCCeEEEEeCCceEEEEe
Confidence 7899999888888888887764 33333332 33568999999999999999
Q ss_pred CCCCCceEEecccC-CCCeEEEEEccCCCeEEEEe--CCCcEEEEEee
Q 040062 323 TASPRPLFVAKHFF-TQSVVDLSWSPDGYSLFACS--LDGTVANFHFE 367 (689)
Q Consensus 323 ~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs--~DG~I~vwd~~ 367 (689)
+.++..+..+. .| ...+..+.|++...++++++ .|+.|++|..+
T Consensus 408 ~~s~~~~~~l~-~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 408 SSSGGILQRLE-GHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred CCccchhhhhc-CCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 99988877766 46 78899999999999999988 68999999753
No 23
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-33 Score=291.83 Aligned_cols=337 Identities=21% Similarity=0.322 Sum_probs=274.9
Q ss_pred ceee-ecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC--EEEE
Q 040062 7 SWVR-HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR--YIAS 83 (689)
Q Consensus 7 ~~~~-H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~--~Las 83 (689)
.|.. |+ .||.-|+|+|.+.+|++|+.||.|++||+.. ..+.+.|++|.|.|.++.|+|+-. .|++
T Consensus 99 swKa~He-~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~-----------~~~th~fkG~gGvVssl~F~~~~~~~lL~s 166 (775)
T KOG0319|consen 99 SWKAIHE-APVITMAFDPTGTLLATGGADGRVKVWDIKN-----------GYCTHSFKGHGGVVSSLLFHPHWNRWLLAS 166 (775)
T ss_pred hHhhccC-CCeEEEEEcCCCceEEeccccceEEEEEeeC-----------CEEEEEecCCCceEEEEEeCCccchhheee
Confidence 4655 88 5999999999999999999999999999997 899999999999999999999654 5899
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE--
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA-- 161 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~-- 161 (689)
|..|+++++||+.... .++..+..|...|++|+|++|+..+++++.|..+.|||+.+.+...
T Consensus 167 g~~D~~v~vwnl~~~~----------------tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~l 230 (775)
T KOG0319|consen 167 GATDGTVRVWNLNDKR----------------TCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTL 230 (775)
T ss_pred cCCCceEEEEEcccCc----------------hHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhee
Confidence 9999999999998653 2456677899999999999998888888888888888863211000
Q ss_pred --------------------------------------------------------------------------------
Q 040062 162 -------------------------------------------------------------------------------- 161 (689)
Q Consensus 162 -------------------------------------------------------------------------------- 161 (689)
T Consensus 231 p~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~ 310 (775)
T KOG0319|consen 231 PLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDE 310 (775)
T ss_pred chhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEc
Confidence
Q ss_pred -------------------------------------------------EEecCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 040062 162 -------------------------------------------------VLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192 (689)
Q Consensus 162 -------------------------------------------------~l~~h~~~V~~l~~spdg~~las~s~Dg~I~ 192 (689)
.+.+|+..|.++....+|.+|++++.|.+++
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svi 390 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVI 390 (775)
T ss_pred cccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEE
Confidence 1246777777777555677888888888888
Q ss_pred EEECCCCcc------------------------------------eeeccCcc--------------cccCCcccEEEEE
Q 040062 193 IWRTSDWSL------------------------------------AHRTDGHW--------------AKSLGSTFFRRLG 222 (689)
Q Consensus 193 iwd~~~~~~------------------------------------~~~~~~~~--------------~~~~~~~~i~~l~ 222 (689)
+|.+++... ++....+. ........|++++
T Consensus 391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va 470 (775)
T KOG0319|consen 391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA 470 (775)
T ss_pred EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence 887622100 00000000 0011123488999
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
.+|+.+.|++++. +....+|+.........+.||...|.++.|++..
T Consensus 471 ia~ndkLiAT~Sq----DktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~d----------------------------- 517 (775)
T KOG0319|consen 471 IAPNDKLIATGSQ----DKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKND----------------------------- 517 (775)
T ss_pred ecCCCceEEeccc----ccceeeecccCceEEEEeeCCccceEEEEecccc-----------------------------
Confidence 9999999999977 4566799888888888999999999999999986
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHH
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDE 382 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~ 382 (689)
+++++++.|++|+||.+.+..++.++. +|...|..+.|-.+|..|++++.||-|++|++.+++...
T Consensus 518 ----q~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~--------- 583 (775)
T KOG0319|consen 518 ----QLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEM--------- 583 (775)
T ss_pred ----ceeEeccCCceEEEEEeccceeeeeec-CccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhh---------
Confidence 899999999999999999999999886 589999999999999999999999999999999988764
Q ss_pred HHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 383 LKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 383 ~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.+..|.++|+.++-+++..++++|+.||.+ ..+.+.
T Consensus 584 ----tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i--~~wkD~ 619 (775)
T KOG0319|consen 584 ----TLDAHNDRVWALSVSPLLDMFVTGGGDGRI--IFWKDV 619 (775)
T ss_pred ----hhhhccceeEEEeecCccceeEecCCCeEE--EEeecC
Confidence 344688999999999999999999999999 555433
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=5.5e-32 Score=257.16 Aligned_cols=245 Identities=27% Similarity=0.402 Sum_probs=220.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|-.++|+|.|+++|+||-|+...||++... ......+..+.+.+|.+.+.|+.|-+|+ .|++++.|.+..+|
T Consensus 98 ~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~-----d~~g~~~v~r~l~gHtgylScC~f~dD~-~ilT~SGD~TCalW 171 (343)
T KOG0286|consen 98 SWVMTCAYSPSGNFVACGGLDNKCSIYPLSTR-----DAEGNVRVSRELAGHTGYLSCCRFLDDN-HILTGSGDMTCALW 171 (343)
T ss_pred eeEEEEEECCCCCeEEecCcCceeEEEecccc-----cccccceeeeeecCccceeEEEEEcCCC-ceEecCCCceEEEE
Confidence 57999999999999999999999999999862 1222346677899999999999999855 68899999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
|++++ +....|.+|.++|.+|+++| +++.+++|+-|+..++||++.+.+++.|.+|.+.|.+
T Consensus 172 Die~g-----------------~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINs 234 (343)
T KOG0286|consen 172 DIETG-----------------QQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINS 234 (343)
T ss_pred Ecccc-----------------eEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccce
Confidence 99999 78899999999999999999 8999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
++|.|+|.-|++|++|++.++||++..+.+..+...
T Consensus 235 v~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~-------------------------------------------- 270 (343)
T KOG0286|consen 235 VRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHD-------------------------------------------- 270 (343)
T ss_pred EEEccCCCeeeecCCCceeEEEeecCCcEEeeeccC--------------------------------------------
Confidence 999999999999999999999999987766655421
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
.-..+|++++|+..+ ++|++|..|..+.+||.-.++.+..+
T Consensus 271 ------~~~~gitSv~FS~SG---------------------------------RlLfagy~d~~c~vWDtlk~e~vg~L 311 (343)
T KOG0286|consen 271 ------SIICGITSVAFSKSG---------------------------------RLLFAGYDDFTCNVWDTLKGERVGVL 311 (343)
T ss_pred ------cccCCceeEEEcccc---------------------------------cEEEeeecCCceeEeeccccceEEEe
Confidence 123578889998876 89999999999999999999888877
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
. +|.+.|++|..+|||..|++||+|.+++||.
T Consensus 312 ~-GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 A-GHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred e-ccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 6 6899999999999999999999999999994
No 25
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.8e-32 Score=259.31 Aligned_cols=287 Identities=20% Similarity=0.330 Sum_probs=247.6
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
..+..+.+|.+.|+.+.|+|+|.+||+|+.|..|.+|++.... +-...+++|.+.|..+.|.+|
T Consensus 38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc----------------eN~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC----------------ENFWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------cceeeeccccceeEeeeeccC
Confidence 4455678999999999999999999999999999999976542 455667799999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
++.|++++.|.+|+.||+++|++++.+++|...|..+.-..-| .++.+++.|+++++||+++...++++.....
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyq----- 176 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQ----- 176 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccccee-----
Confidence 9999999999999999999999999999999999998844444 4677889999999999999888888765443
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
+..+.|..++..+.++.- ...+.+|+.......+.+.||..+|+.+..++.+
T Consensus 177 --ltAv~f~d~s~qv~sggI----dn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~g---------------------- 228 (338)
T KOG0265|consen 177 --LTAVGFKDTSDQVISGGI----DNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYG---------------------- 228 (338)
T ss_pred --EEEEEecccccceeeccc----cCceeeeccccCcceEEeecccCceeeEEeccCC----------------------
Confidence 789999999999988754 5667899999999999999999999999999987
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCC----CceEEeccc-C--CCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASP----RPLFVAKHF-F--TQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~----~~~~~~~~~-h--~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
.++.+-+.|+++++||++.. +++.++... | ......++|+|++.++.+|+.|..+++||...
T Consensus 229 -----------s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~ 297 (338)
T KOG0265|consen 229 -----------SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTS 297 (338)
T ss_pred -----------CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeeccc
Confidence 78999999999999999853 335444431 2 24567789999999999999999999999988
Q ss_pred cccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 369 KELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 369 ~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
..++..++ +|.+.|.++.|+|...+|.+++.|.++
T Consensus 298 r~~lyklp-------------Gh~gsvn~~~Fhp~e~iils~~sdk~i 332 (338)
T KOG0265|consen 298 RRILYKLP-------------GHYGSVNEVDFHPTEPIILSCSSDKTI 332 (338)
T ss_pred ccEEEEcC-------------CcceeEEEeeecCCCcEEEEeccCcee
Confidence 77765444 577789999999999999999999988
No 26
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1e-31 Score=256.32 Aligned_cols=283 Identities=23% Similarity=0.356 Sum_probs=242.7
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+|. ..|+.+.|+|+|..||+||.|..|.+|+... ..+....+++|.+.|..+.|.+|++.|++++.|+
T Consensus 44 ~gh~-geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~g----------dceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 44 PGHK-GEIYTIKFHPDGSCFASGGSDRAIVLWNVYG----------DCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCCc-ceEEEEEECCCCCeEeecCCcceEEEEeccc----------cccceeeeccccceeEeeeeccCCCEEEEecCCc
Confidence 4677 5999999999999999999999999999764 2455567779999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
+|+.||.+++ +..+.+++|..-|..+.-+.-|. ++.+++.|+++++||+++.+.++++. ..
T Consensus 113 ~v~~wD~~tG-----------------~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 113 TVRGWDAETG-----------------KRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred eEEEEecccc-----------------eeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cc
Confidence 9999999999 78899999999999998554454 67788999999999999999888886 56
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..+++++|..++..+.+|+-|+.|++||++.......+.++... |..++.+++|.++.+-+- ...+++|+
T Consensus 175 yqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~Dt------It~lsls~~gs~llsnsM----d~tvrvwd 244 (338)
T KOG0265|consen 175 YQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADT------ITGLSLSRYGSFLLSNSM----DNTVRVWD 244 (338)
T ss_pred eeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCc------eeeEEeccCCCccccccc----cceEEEEE
Confidence 78899999999999999999999999999999999999998776 999999999999988543 55667787
Q ss_pred cCCcee----eeeecCC----CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 248 RGEWAA----TFDFLGH----NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 248 ~~~~~~----~~~l~~h----~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
...+.. ...+.+| ......++|+|++ +.+..|+.|..++
T Consensus 245 ~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~---------------------------------~~i~ags~dr~vy 291 (338)
T KOG0265|consen 245 VRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG---------------------------------TKITAGSADRFVY 291 (338)
T ss_pred ecccCCCCceEEEeecchhhhhhhcceeeccCCC---------------------------------CccccccccceEE
Confidence 665533 3334444 2334556777765 8899999999999
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
+||....+.+..+. +|.+.|+++.|+|...+|.+++.|.+|++=
T Consensus 292 vwd~~~r~~lyklp-Gh~gsvn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 292 VWDTTSRRILYKLP-GHYGSVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred EeecccccEEEEcC-CcceeEEEeeecCCCcEEEEeccCceeEee
Confidence 99998888888776 689999999999999999999999999873
No 27
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-33 Score=281.70 Aligned_cols=291 Identities=19% Similarity=0.298 Sum_probs=243.1
Q ss_pred CceeeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 6 PSWVRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
..|-+|. ..|.++.|.| .+.+|++++.|+.|+||++-. .+++++++.+|..+|..++|+.+|..|+|+
T Consensus 208 ~~~~gH~-kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~----------~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~ 276 (503)
T KOG0282|consen 208 HNLSGHT-KGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYD----------DRRCLRTFKGHRKPVRDASFNNCGTSFLSA 276 (503)
T ss_pred eeccCCc-cccchhhhccceeeEEEecCCCceEEEEEEec----------CcceehhhhcchhhhhhhhccccCCeeeee
Confidence 3678899 6999999999 899999999999999999976 479999999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
+.|+.|++||+++| ++...+. -...+.|+.|+||+ +.+++|+.|+.|+.||+++++.+..+
T Consensus 277 sfD~~lKlwDtETG-----------------~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeY 338 (503)
T KOG0282|consen 277 SFDRFLKLWDTETG-----------------QVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEY 338 (503)
T ss_pred ecceeeeeeccccc-----------------eEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHH
Confidence 99999999999999 5666554 34568999999998 79999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
..|-+.|..+.|-++|+++++.++|++++||+.+....+..+..+.. -...++..+|++.++++-+-++.... .
T Consensus 339 d~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~-----hsmP~~~~~P~~~~~~aQs~dN~i~i-f 412 (503)
T KOG0282|consen 339 DRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEM-----HTMPCLTLHPNGKWFAAQSMDNYIAI-F 412 (503)
T ss_pred HhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhh-----ccCcceecCCCCCeehhhccCceEEE-E
Confidence 99999999999999999999999999999999988776665543322 12578899999999988654433221 1
Q ss_pred ceeecCCceeeeeecCCC--CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 244 PVLERGEWAATFDFLGHN--APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~--~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.....-.......|.+|. +.-..+.|+|++ .+|++|+.||.+.+|
T Consensus 413 s~~~~~r~nkkK~feGh~vaGys~~v~fSpDG---------------------------------~~l~SGdsdG~v~~w 459 (503)
T KOG0282|consen 413 STVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG---------------------------------RTLCSGDSDGKVNFW 459 (503)
T ss_pred ecccccccCHhhhhcceeccCceeeEEEcCCC---------------------------------CeEEeecCCccEEEe
Confidence 111222223333466664 445567777776 899999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEE
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFH 365 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd 365 (689)
|.++-+.+..++. |.+.+..+.|+|.. ..+|+|+.||.|++|+
T Consensus 460 dwkt~kl~~~lka-h~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 460 DWKTTKLVSKLKA-HDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred echhhhhhhcccc-CCcceEEEEecCCCcceeEecccCceeEecC
Confidence 9999998888764 78999999999964 5799999999999996
No 28
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-30 Score=271.73 Aligned_cols=354 Identities=18% Similarity=0.216 Sum_probs=298.9
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
....+++|. ..|.+++|+.|.++|++|+.|-.++||+++... .-..+.+.+|.+.|.+.-|..+...|.+
T Consensus 137 l~r~~~g~f-ddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k---------~~~~~~l~gHkd~VvacfF~~~~~~l~t 206 (893)
T KOG0291|consen 137 LHRTYLGHF-DDITSIDWSDDSRLLVTGSRDLSARLFGVDGNK---------NLFTYALNGHKDYVVACFFGANSLDLYT 206 (893)
T ss_pred EeeeecCCc-cceeEEEeccCCceEEeccccceEEEEEecccc---------ccceEeccCCCcceEEEEeccCcceEEE
Confidence 445678888 699999999999999999999999999998621 2346778899999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCcccc------CCCC---------CCCcccceEE--EEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 84 GSDDQVILIHEKKPGSGTTEF------GSGE---------PPDIENWKVA--MTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~------~~~~---------~~~~~~~~~~--~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
.+.||.+.+|..........- +..+ ......|... .-+......|++.+|++.-..|+++-..
T Consensus 207 vskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFss 286 (893)
T KOG0291|consen 207 VSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSS 286 (893)
T ss_pred EecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecC
Confidence 999999999998733111000 0000 0011123333 2233334789999999999999999999
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC-CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD-KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
|...+|++....++..+.-....|..++|+..|.+|+.++.. |.+-||++.+..-+.+.++|... +.+++++|
T Consensus 287 G~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~------i~~l~YSp 360 (893)
T KOG0291|consen 287 GEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR------ITSLAYSP 360 (893)
T ss_pred CeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccc------eeeEEECC
Confidence 999999999999999999888999999999999999998864 79999999988888888888766 89999999
Q ss_pred CCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 226 CGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 226 dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
||++|++++.+ ..+.+|+....-+..+|..|...|+.+.|+..+
T Consensus 361 Dgq~iaTG~eD----gKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-------------------------------- 404 (893)
T KOG0291|consen 361 DGQLIATGAED----GKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-------------------------------- 404 (893)
T ss_pred CCcEEEeccCC----CcEEEEeccCceEEEEeccCCCceEEEEEEecC--------------------------------
Confidence 99999999875 456799999999999999999999999999886
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC-cEEEEEeeccccccccChHHHHHHH
Q 040062 306 YNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG-TVANFHFEVKELGHRLSDAELDELK 384 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG-~I~vwd~~~~~l~~~l~~~~~~~~~ 384 (689)
+.+++.+-||+|+.||+...+..+++.....-...|++..|.|..+++|+.|. .|+||++++|+++..+.
T Consensus 405 -~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLs-------- 475 (893)
T KOG0291|consen 405 -NVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILS-------- 475 (893)
T ss_pred -CEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhc--------
Confidence 89999999999999999999999988876666778999999999999999887 49999999999986443
Q ss_pred HhccCCccCceeeeecCchhhhhHhhccccceeeeeeeccc
Q 040062 385 RSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDVQ 425 (689)
Q Consensus 385 ~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~~ 425 (689)
+|.++|.+++|+|++..|+++|.|.+| +.+..-.
T Consensus 476 -----GHEgPVs~l~f~~~~~~LaS~SWDkTV--RiW~if~ 509 (893)
T KOG0291|consen 476 -----GHEGPVSGLSFSPDGSLLASGSWDKTV--RIWDIFS 509 (893)
T ss_pred -----CCCCcceeeEEccccCeEEeccccceE--EEEEeec
Confidence 589999999999999999999999999 7765443
No 29
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=265.24 Aligned_cols=292 Identities=19% Similarity=0.274 Sum_probs=240.6
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
+..|. +.|+-+.||++|++||+++.|.+..||.+.... ..++.+++.+|..+|..+.||||.+||++|+.|
T Consensus 220 l~~ht-dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 220 LQDHT-DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------HFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred HhhCC-CcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------ceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence 34677 699999999999999999999999999987521 257889999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG-H 166 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-h 166 (689)
..+.+||+.++.....+ -.+|...+.+++|.|||..+++|+.|+.|..||+. |..+...++ .
T Consensus 291 e~~~lwDv~tgd~~~~y----------------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr 353 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLY----------------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR 353 (519)
T ss_pred HheeeccCCcchhhhhc----------------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc
Confidence 99999999998432221 12356789999999999999999999999999985 444444443 3
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++..+||+++++.+.|..|++|+..+......+..+. .|++++.|.+++++++.-. ...+.+|
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~-------~its~~iS~d~k~~LvnL~----~qei~LW 422 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQ-------PITSFSISKDGKLALVNLQ----DQEIHLW 422 (519)
T ss_pred cceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccC-------ceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence 3679999999999999999999999999988765554444332 2899999999999998654 4667799
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
+..++.....+.||...-..+.-.-.+ .+..++++|++|+.|+||+..++
T Consensus 423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg------------------------------~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 423 DLEENKLVRKYFGHKQGHFIIRSCFGG------------------------------GNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred ecchhhHHHHhhcccccceEEEeccCC------------------------------CCcceEEecCCCceEEEEEccCC
Confidence 999888888888987654444322111 14479999999999999999999
Q ss_pred CceEEecccCCCCeEEEEEccC-CCeEEEEeCCCcEEEEEee
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPD-GYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~DG~I~vwd~~ 367 (689)
+++.++. +|...|++++|+|. -.++|++++||+|+||...
T Consensus 473 kll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 473 KLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred ceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 9999886 68999999999995 5678999999999999864
No 30
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.4e-32 Score=287.56 Aligned_cols=172 Identities=27% Similarity=0.517 Sum_probs=162.7
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
...++|.| +|+.+.|+|+.++|++++.|++||+|.+.+ ...+..+++|..+|.+++|+|.|-||||++
T Consensus 445 ~~L~GH~G-PVyg~sFsPd~rfLlScSED~svRLWsl~t-----------~s~~V~y~GH~~PVwdV~F~P~GyYFatas 512 (707)
T KOG0263|consen 445 RTLYGHSG-PVYGCSFSPDRRFLLSCSEDSSVRLWSLDT-----------WSCLVIYKGHLAPVWDVQFAPRGYYFATAS 512 (707)
T ss_pred EEeecCCC-ceeeeeecccccceeeccCCcceeeeeccc-----------ceeEEEecCCCcceeeEEecCCceEEEecC
Confidence 34789996 999999999999999999999999999998 888999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|++.++|..+.. ...+.+.+|-++|.|+.|+|+..|+++|+.|.+|++||+.+|..++.|.+
T Consensus 513 ~D~tArLWs~d~~-----------------~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G 575 (707)
T KOG0263|consen 513 HDQTARLWSTDHN-----------------KPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG 575 (707)
T ss_pred CCceeeeeecccC-----------------CchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC
Confidence 9999999998876 67788899999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
|.++|.+++|+|+|++|++|+.||.|.+||+.++.++..+.
T Consensus 576 H~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~ 616 (707)
T KOG0263|consen 576 HKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLK 616 (707)
T ss_pred CCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhh
Confidence 99999999999999999999999999999998877665544
No 31
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.3e-31 Score=276.84 Aligned_cols=292 Identities=22% Similarity=0.315 Sum_probs=259.2
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
.|..+..|. ..|.|++|||...+++++-.+|.|.|||.++ ..+++.+.-..-+|.+..|-..-+++++
T Consensus 5 ~krk~~~rS-dRVKsVd~HPtePw~la~LynG~V~IWnyet-----------qtmVksfeV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 5 FKRKFQSRS-DRVKSVDFHPTEPWILAALYNGDVQIWNYET-----------QTMVKSFEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hhhHhhccC-CceeeeecCCCCceEEEeeecCeeEEEeccc-----------ceeeeeeeecccchhhheeeeccceEEE
Confidence 355666777 6999999999999999999999999999998 8889999888899999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAV 162 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~ 162 (689)
|++|..|+||+..+. +.+..|..|..-|.+++.+|...++++++.|-.|++||.+. ..+.++
T Consensus 73 GsDD~~IrVfnynt~-----------------ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qt 135 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTG-----------------EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQT 135 (794)
T ss_pred ecCCceEEEEecccc-----------------eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeE
Confidence 999999999999998 78999999999999999999999999999999999999976 477889
Q ss_pred EecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 163 LRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 163 l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
+.+|...|.+++|+| |.+.|++++-|++|++|.+.+..+
T Consensus 136 feGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~---------------------------------------- 175 (794)
T KOG0276|consen 136 FEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHP---------------------------------------- 175 (794)
T ss_pred EcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCC----------------------------------------
Confidence 999999999999999 668999999999999999854222
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.+++.+|...|.++.|-+.+ +..+|++|+.|..|+||
T Consensus 176 ------------nfTl~gHekGVN~Vdyy~~g-------------------------------dkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 176 ------------NFTLEGHEKGVNCVDYYTGG-------------------------------DKPYLISGADDLTIKVW 212 (794)
T ss_pred ------------ceeeeccccCcceEEeccCC-------------------------------CcceEEecCCCceEEEe
Confidence 23567899999999998876 55799999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET 401 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S 401 (689)
|..+..++.++. +|...|..++|+|.-..+++|++||+++||+-.+-++...+ .|| .+++++++-.
T Consensus 213 DyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tL-----------n~g--leRvW~I~~~ 278 (794)
T KOG0276|consen 213 DYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTL-----------NYG--LERVWCIAAH 278 (794)
T ss_pred ecchHHHHHHhh-cccccceEEEecCCCcEEEEecCCccEEEecCcceehhhhh-----------hcC--CceEEEEeec
Confidence 999999999876 58999999999999999999999999999998776654332 232 3479999999
Q ss_pred chhhhhHhhccccceeeeee
Q 040062 402 PAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 402 pdg~~Las~s~DG~v~~~~~ 421 (689)
+....++.|.+.|.+..++.
T Consensus 279 k~~~~i~vG~Deg~i~v~lg 298 (794)
T KOG0276|consen 279 KGDGKIAVGFDEGSVTVKLG 298 (794)
T ss_pred CCCCeEEEeccCCcEEEEcc
Confidence 99999999999999955543
No 32
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.3e-30 Score=242.50 Aligned_cols=271 Identities=18% Similarity=0.337 Sum_probs=227.9
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
+.|..+.|+.+.+.||++.||+++. ..|||||+.+ ..+..+.++.+|...|++|.|.-+|+++++|++||
T Consensus 36 iqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S---------~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg 105 (311)
T KOG0315|consen 36 IQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNS---------NNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG 105 (311)
T ss_pred EecCccceeeEEEcCCcchhhhccC-CeeEEEEccC---------CCCCceeEEeccCCceEEEEEeecCeEEEecCCCc
Confidence 4566679999999999999999887 6899999987 23558899999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR-GHS 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~-~h~ 167 (689)
+++|||++.. .......|..+|+++..+|+...|++|..+|.|++||+.+..+...+. ...
T Consensus 106 t~kIWdlR~~------------------~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~ 167 (311)
T KOG0315|consen 106 TVKIWDLRSL------------------SCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDD 167 (311)
T ss_pred eEEEEeccCc------------------ccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCC
Confidence 9999999874 233344588999999999999999999999999999999887766554 345
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.+++..|||.+++.+...|+.++|++-+.+....+.....-.....++.++.+|||+++|++++. ...+++|+
T Consensus 168 ~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ss----dktv~iwn 243 (311)
T KOG0315|consen 168 TSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSS----DKTVKIWN 243 (311)
T ss_pred cceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecC----CceEEEEe
Confidence 78999999999999999999999999999765444333322222344567999999999999999987 56777998
Q ss_pred cCCc-eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 248 RGEW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 248 ~~~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
...+ +....+.+|...+..++|+.++ .||++|+.|+.+++||+..+
T Consensus 244 ~~~~~kle~~l~gh~rWvWdc~FS~dg---------------------------------~YlvTassd~~~rlW~~~~~ 290 (311)
T KOG0315|consen 244 TDDFFKLELVLTGHQRWVWDCAFSADG---------------------------------EYLVTASSDHTARLWDLSAG 290 (311)
T ss_pred cCCceeeEEEeecCCceEEeeeeccCc---------------------------------cEEEecCCCCceeecccccC
Confidence 8777 7778889999999999999886 89999999999999999999
Q ss_pred CceEEecccCCCCeEEEEE
Q 040062 327 RPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~ 345 (689)
+.+..... |.+...|++.
T Consensus 291 k~v~qy~g-h~K~~vc~~l 308 (311)
T KOG0315|consen 291 KEVRQYQG-HHKAAVCVAL 308 (311)
T ss_pred ceeeecCC-cccccEEEEe
Confidence 99988775 4455555554
No 33
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-31 Score=284.40 Aligned_cols=306 Identities=21% Similarity=0.314 Sum_probs=255.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|-.++|||...+++++-..|.|++||..- +.++..|..|.|+|..+.|+|++.+|+||++|..|++|
T Consensus 10 sRvKglsFHP~rPwILtslHsG~IQlWDYRM-----------~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVW 78 (1202)
T KOG0292|consen 10 SRVKGLSFHPKRPWILTSLHSGVIQLWDYRM-----------GTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVW 78 (1202)
T ss_pred ccccceecCCCCCEEEEeecCceeeeehhhh-----------hhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEE
Confidence 5899999999999999999999999999986 89999999999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
+..+. +++.++.+|-..|..+.|++.-.++++++.|.+|+||+..++.++..+.+|...|.|.
T Consensus 79 nYk~r-----------------rclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcA 141 (1202)
T KOG0292|consen 79 NYKTR-----------------RCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCA 141 (1202)
T ss_pred ecccc-----------------eehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEee
Confidence 99987 7899999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
.|+|....++++|-|.+||+||+..-.....-.+..... ..+..+ ...++....-..
T Consensus 142 qFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~------------~~~~~~-----------~~dLfg~~DaVV 198 (1202)
T KOG0292|consen 142 QFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQ------------MRGQQG-----------NSDLFGQTDAVV 198 (1202)
T ss_pred ccCCccceEEEecccceEEEEeecchhccCCCCCCchhh------------hhcccc-----------chhhcCCcCeee
Confidence 999999999999999999999986533322221111100 000000 001111122233
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE-Ee
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF-VA 332 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~-~~ 332 (689)
.+.+.||+..|.-++|+|.. .+|++|+.|..|++|.+...+.-. ..
T Consensus 199 K~VLEGHDRGVNwaAfhpTl---------------------------------pliVSG~DDRqVKlWrmnetKaWEvDt 245 (1202)
T KOG0292|consen 199 KHVLEGHDRGVNWAAFHPTL---------------------------------PLIVSGADDRQVKLWRMNETKAWEVDT 245 (1202)
T ss_pred eeeecccccccceEEecCCc---------------------------------ceEEecCCcceeeEEEeccccceeehh
Confidence 45688999999999999986 799999999999999987554321 12
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcc
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASA 412 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~ 412 (689)
-.+|.+.|+++-|+|...++++.|+|++|+|||++.....+.+ ....++-+.++-+|...++|+|.+
T Consensus 246 crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf-------------rrendRFW~laahP~lNLfAAgHD 312 (1202)
T KOG0292|consen 246 CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF-------------RRENDRFWILAAHPELNLFAAGHD 312 (1202)
T ss_pred hhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee-------------eccCCeEEEEEecCCcceeeeecC
Confidence 2368999999999999999999999999999999877655332 223347899999999999999999
Q ss_pred ccce
Q 040062 413 KETT 416 (689)
Q Consensus 413 DG~v 416 (689)
.|.+
T Consensus 313 sGm~ 316 (1202)
T KOG0292|consen 313 SGMI 316 (1202)
T ss_pred CceE
Confidence 9988
No 34
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.6e-32 Score=271.37 Aligned_cols=281 Identities=22% Similarity=0.346 Sum_probs=243.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
-...|..|+|.|+|+.|++|+..|.+.+|+...- .....+..|+..|.++.|++++.++++|+
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~f-----------------nFEtilQaHDs~Vr~m~ws~~g~wmiSgD 157 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSF-----------------NFETILQAHDSPVRTMKWSHNGTWMISGD 157 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCcee-----------------eHHHHhhhhcccceeEEEccCCCEEEEcC
Confidence 4457999999999999999999999999987432 33445678999999999999999999999
Q ss_pred CCCeEEEEEcCCCeEEEEEec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEE
Q 040062 145 LDNTIHIWNMSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
.+|.|++|+..-. .+..+.. |...|++++|+|....|+++++||+|+|||....+....+.+|.-. +.++.|
T Consensus 158 ~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd------VksvdW 230 (464)
T KOG0284|consen 158 KGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD------VKSVDW 230 (464)
T ss_pred CCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC------cceecc
Confidence 9999999998544 3444444 4489999999999999999999999999999999888888877555 899999
Q ss_pred cCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 224 SPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 224 spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
+|.-..|++++.++ .+.+|+.++..+...+.+|...|..+.|++++
T Consensus 231 HP~kgLiasgskDn----lVKlWDprSg~cl~tlh~HKntVl~~~f~~n~------------------------------ 276 (464)
T KOG0284|consen 231 HPTKGLIASGSKDN----LVKLWDPRSGSCLATLHGHKNTVLAVKFNPNG------------------------------ 276 (464)
T ss_pred CCccceeEEccCCc----eeEeecCCCcchhhhhhhccceEEEEEEcCCC------------------------------
Confidence 99999999987755 78899999999999999999999999999997
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccC-CCeEEEEeCCCcEEEEEeeccccccccChHHHHH
Q 040062 304 QPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPD-GYSLFACSLDGTVANFHFEVKELGHRLSDAELDE 382 (689)
Q Consensus 304 ~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~ 382 (689)
++|++++.|..+++||+++.+.++.++ .|...|+++.|+|- ..+|.+|+.||.|..|.+...+...
T Consensus 277 ---N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~--------- 343 (464)
T KOG0284|consen 277 ---NWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLG--------- 343 (464)
T ss_pred ---CeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeeccCCCceEEEecccccccc---------
Confidence 899999999999999999888888876 58999999999995 4577779999999999987333322
Q ss_pred HHHhccCCccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 383 LKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 383 ~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
..--+|.+.|++|+|+|=|.+|++|+.|.++ +.+
T Consensus 344 ---~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~--rfw 377 (464)
T KOG0284|consen 344 ---EIPPAHDGEIWSLAYHPLGHILATGSNDRTV--RFW 377 (464)
T ss_pred ---CCCcccccceeeeeccccceeEeecCCCcce--eee
Confidence 2223588899999999999999999999999 544
No 35
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=2.4e-30 Score=243.73 Aligned_cols=243 Identities=30% Similarity=0.462 Sum_probs=210.5
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
+|. ..|.+++|+|.|++||+|+.|.++.||.-.. ...+++.++.+|...|.|++|+++|.|||+|+.|+.
T Consensus 59 ~hk-rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~---------~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKS 128 (312)
T KOG0645|consen 59 GHK-RSVRSVAWSPHGRYLASASFDATVVIWKKED---------GEFECVATLEGHENEVKCVAWSASGNYLATCSRDKS 128 (312)
T ss_pred cch-heeeeeeecCCCcEEEEeeccceEEEeecCC---------CceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCe
Confidence 477 6999999999999999999999999998654 246889999999999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCeEEEEEecC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS---TGICTAVLRGH 166 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~---~~~~~~~l~~h 166 (689)
|-||.++.+ +.+.+...+..|...|..+.|+|...+|++++.|++|++|+-. ..+++..+.+|
T Consensus 129 VWiWe~ded--------------dEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~ 194 (312)
T KOG0645|consen 129 VWIWEIDED--------------DEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGH 194 (312)
T ss_pred EEEEEecCC--------------CcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCc
Confidence 999999865 3448899999999999999999999999999999999999766 45789999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++|++.|..|+++++|++++||...+. +
T Consensus 195 ~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~----------------------------------------- 228 (312)
T KOG0645|consen 195 ENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----L----------------------------------------- 228 (312)
T ss_pred cceEEEEEecCCCceEEEecCCcceEeeeeccC-----c-----------------------------------------
Confidence 999999999999999999999999999986410 0
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
-..|...++.+.|. + ..|++++.|+.|++|.-...
T Consensus 229 ----------~~~~sr~~Y~v~W~-~----------------------------------~~IaS~ggD~~i~lf~~s~~ 263 (312)
T KOG0645|consen 229 ----------SGMHSRALYDVPWD-N----------------------------------GVIASGGGDDAIRLFKESDS 263 (312)
T ss_pred ----------chhcccceEeeeec-c----------------------------------cceEeccCCCEEEEEEecCC
Confidence 01256778888887 4 48999999999999976642
Q ss_pred ------CceEEecccCCCCeEEEEEccC-CCeEEEEeCCCcEEEEEee
Q 040062 327 ------RPLFVAKHFFTQSVVDLSWSPD-GYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 327 ------~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~DG~I~vwd~~ 367 (689)
+.+......|...|+++.|.|. ...|++|+.||.|++|.+.
T Consensus 264 ~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 264 PDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 2233344568889999999995 6789999999999999875
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=2e-29 Score=295.96 Aligned_cols=292 Identities=18% Similarity=0.289 Sum_probs=233.6
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSD 86 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~ 86 (689)
...|. ..|++++|+|+|++||+|+.|+.|+||++....... .........+. +...|.+++|++ ++.+|++++.
T Consensus 479 ~~~~~-~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~---~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~ 553 (793)
T PLN00181 479 LLNSS-NLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDG---RDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNF 553 (793)
T ss_pred ccCCC-CcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccc---cccccceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence 34466 599999999999999999999999999986411000 00011223333 346799999987 5789999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
||.|++||+.++ +.+..+.+|...|++++|+| ++.+|++|+.|+.|++||+.++..+..+..
T Consensus 554 Dg~v~lWd~~~~-----------------~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~ 616 (793)
T PLN00181 554 EGVVQVWDVARS-----------------QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT 616 (793)
T ss_pred CCeEEEEECCCC-----------------eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec
Confidence 999999999876 67788889999999999997 788999999999999999999999888885
Q ss_pred CCCCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 166 HSSLVKGVAWD-PIGSFIASQSDDKTVIIWRTSDWS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 166 h~~~V~~l~~s-pdg~~las~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
+ ..|.++.|+ +++.+|++|+.|+.|++||+++.. ....+..+.. .+..+.|. ++.+|++++. ...+
T Consensus 617 ~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~------~V~~v~f~-~~~~lvs~s~----D~~i 684 (793)
T PLN00181 617 K-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK------TVSYVRFV-DSSTLVSSST----DNTL 684 (793)
T ss_pred C-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC------CEEEEEEe-CCCEEEEEEC----CCEE
Confidence 4 678999995 478999999999999999998765 3444444433 38889997 6778888765 3457
Q ss_pred ceeecCC------ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 244 PVLERGE------WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 244 ~i~~~~~------~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
.+|+... +.....+.+|...+.++.|++++ .+|++|+.|+.
T Consensus 685 kiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~---------------------------------~~lasgs~D~~ 731 (793)
T PLN00181 685 KLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD---------------------------------GYIATGSETNE 731 (793)
T ss_pred EEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC---------------------------------CEEEEEeCCCE
Confidence 7887653 34456788999999999999886 79999999999
Q ss_pred EEEEeCCCCCceEEec------------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 318 ITVWTTASPRPLFVAK------------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~------------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
|++|+.....++..+. ..|...|.+++|++++.+|++|+.||.|+||++
T Consensus 732 v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 732 VFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 9999987665443221 123456999999999999999999999999986
No 37
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=9.7e-31 Score=275.93 Aligned_cols=368 Identities=19% Similarity=0.219 Sum_probs=277.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..|+++++.||+.+|++++....+++|++.+ ++.++.+.. |.++|.-++|+|.+.+|++|+.|+.+++
T Consensus 63 d~ita~~l~~d~~~L~~a~rs~llrv~~L~t-----------gk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~V 131 (775)
T KOG0319|consen 63 DEITALALTPDEEVLVTASRSQLLRVWSLPT-----------GKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKV 131 (775)
T ss_pred hhhheeeecCCccEEEEeeccceEEEEEccc-----------chHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEE
Confidence 5799999999999999999999999999998 788999988 9999999999999999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCe-EEEEEecCCCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS--ILASGSLDNTIHIWNMSTGI-CTAVLRGHSSL 169 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~Lasgs~Dg~I~vwd~~~~~-~~~~l~~h~~~ 169 (689)
||+..+ .+...|++|.+.|..+.|+|+-. .|++|..|+.+++||+++.. ++..+..|.+.
T Consensus 132 Wdi~~~-----------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~ 194 (775)
T KOG0319|consen 132 WDIKNG-----------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSA 194 (775)
T ss_pred EEeeCC-----------------EEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhh
Confidence 999988 78999999999999999999865 68999999999999999654 47888899999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC------------------------------------------
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG------------------------------------------ 207 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~------------------------------------------ 207 (689)
|++++|.+|+..+++++.|..+.+||+.+.+....+..
T Consensus 195 vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~ 274 (775)
T KOG0319|consen 195 VTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVY 274 (775)
T ss_pred eeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhh
Confidence 99999999999999999999999999743222111100
Q ss_pred ----c-ccccCC------------------------------------cccEEEEEE-cCCCCeEEEecCCCC-------
Q 040062 208 ----H-WAKSLG------------------------------------STFFRRLGW-SPCGHFITTTHGFQK------- 238 (689)
Q Consensus 208 ----~-~~~~~~------------------------------------~~~i~~l~~-spdg~~l~~~~~~~~------- 238 (689)
+ ...... ...|..++| .|+.++++++.....
T Consensus 275 ~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~ 354 (775)
T KOG0319|consen 275 KQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLP 354 (775)
T ss_pred hhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecC
Confidence 0 000000 000122222 233344443322110
Q ss_pred ------------------------------Cccccceeec----CCceeeeeecCCCCCEEEEEEcCCcccccccccccc
Q 040062 239 ------------------------------PRHSAPVLER----GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEV 284 (689)
Q Consensus 239 ------------------------------~~~~~~i~~~----~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~ 284 (689)
.+..+.+|.. ....+.....+|...|.+++++..+..+.....++.
T Consensus 355 ~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~ 434 (775)
T KOG0319|consen 355 TSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDC 434 (775)
T ss_pred CCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCc
Confidence 1223334422 112223345689999999999877655544444333
Q ss_pred ccccccccC-------------------CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE
Q 040062 285 KAAPVGWTN-------------------GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 285 ~~~~~~~~~-------------------~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
....|.... +..+.....+++..+||+|++|.+.+||+++..+.+.++. +|...|.++.|
T Consensus 435 tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLs-GH~RGvw~V~F 513 (775)
T KOG0319|consen 435 TLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLS-GHTRGVWCVSF 513 (775)
T ss_pred eEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEee-CCccceEEEEe
Confidence 222222111 0011122337788999999999999999999777777765 68999999999
Q ss_pred ccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeeccc
Q 040062 346 SPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDVQ 425 (689)
Q Consensus 346 spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~~ 425 (689)
++..+.|+++|.|++|+||.+++.....+ +.+|...|..+.|-.+|..|++++.||.+ |++...+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT-------------~eGH~~aVlra~F~~~~~qliS~~adGli--KlWnikt 578 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKT-------------FEGHTSAVLRASFIRNGKQLISAGADGLI--KLWNIKT 578 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeee-------------ecCccceeEeeeeeeCCcEEEeccCCCcE--EEEeccc
Confidence 99999999999999999999999887744 44688889999999999999999999999 7776443
No 38
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=3.3e-30 Score=237.88 Aligned_cols=281 Identities=20% Similarity=0.229 Sum_probs=241.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|. .+|..+.|+-||+|.++++.|.+|++||... +.+++++.+|...|..++.+.|...|++|+.|+.
T Consensus 15 ~~q-gaV~avryN~dGnY~ltcGsdrtvrLWNp~r-----------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~ 82 (307)
T KOG0316|consen 15 CAQ-GAVRAVRYNVDGNYCLTCGSDRTVRLWNPLR-----------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKA 82 (307)
T ss_pred ccc-cceEEEEEccCCCEEEEcCCCceEEeecccc-----------cceeeeecCCCceeeeccccccccccccCCCCce
Confidence 466 4999999999999999999999999999987 8999999999999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC--CeEEEEEecCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST--GICTAVLRGHS 167 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~--~~~~~~l~~h~ 167 (689)
|.+||+.++ +..+.+++|...|..+.|+.+...+++|+.|.++++||.++ .++++.+....
T Consensus 83 v~vwDV~TG-----------------kv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 83 VQVWDVNTG-----------------KVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred EEEEEcccC-----------------eeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 999999999 89999999999999999999999999999999999999975 57788888788
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.+|... +..|++|+.||+++.||++.+.+....-++ .|++++|++|++..+++.- ...+++++
T Consensus 146 D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~sDy~g~--------pit~vs~s~d~nc~La~~l----~stlrLlD 211 (307)
T KOG0316|consen 146 DGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSSDYFGH--------PITSVSFSKDGNCSLASSL----DSTLRLLD 211 (307)
T ss_pred CceeEEEec--ccEEEeeccCCcEEEEEeecceeehhhcCC--------cceeEEecCCCCEEEEeec----cceeeecc
Confidence 889888876 678999999999999999998877665543 2899999999999988754 56778889
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
..+.+....+.+|...-..+...-. +....+++|++||.+++||+....
T Consensus 212 k~tGklL~sYkGhkn~eykldc~l~-------------------------------qsdthV~sgSEDG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 212 KETGKLLKSYKGHKNMEYKLDCCLN-------------------------------QSDTHVFSGSEDGKVYFWDLVDET 260 (307)
T ss_pred cchhHHHHHhcccccceeeeeeeec-------------------------------ccceeEEeccCCceEEEEEeccce
Confidence 8888888888888765444332211 123789999999999999999998
Q ss_pred ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 328 PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
.+..+.....-.|.++.++|.-..|+++. ++.+.+|.
T Consensus 261 ~~sk~~~~~~v~v~dl~~hp~~~~f~~A~-~~~~~~~~ 297 (307)
T KOG0316|consen 261 QISKLSVVSTVIVTDLSCHPTMDDFITAT-GHGDLFWY 297 (307)
T ss_pred eeeeeccCCceeEEeeecccCccceeEec-CCceecee
Confidence 88877653233389999999887787776 55667775
No 39
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.98 E-value=8.8e-30 Score=260.11 Aligned_cols=284 Identities=31% Similarity=0.491 Sum_probs=245.3
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS 138 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 138 (689)
+.++.+|.+.|++++|+|++++|++++.||.|++|++.++ .....+..|...+..+.|+++++
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~ 64 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETG-----------------ELLRTLKGHTGPVRDVAASADGT 64 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCC-----------------CcEEEEecCCcceeEEEECCCCC
Confidence 3457789999999999999999999999999999999876 45667778999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 139 ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 139 ~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
+|++++.|+.|++||+.+++.+..+..|...|.++.|+++++++++++.|+.|++||+++++....+..+.. .+
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~------~i 138 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTD------WV 138 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCC------cE
Confidence 999999999999999999888888999999999999999999999888899999999998887777664432 38
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
.++.|+|++.+++++.. ...+.+|+.........+..|...+.++.|++++
T Consensus 139 ~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------------------------- 189 (289)
T cd00200 139 NSVAFSPDGTFVASSSQ----DGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDG------------------------- 189 (289)
T ss_pred EEEEEcCcCCEEEEEcC----CCcEEEEEccccccceeEecCccccceEEECCCc-------------------------
Confidence 99999999998888763 3467788887776667777888899999999886
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChH
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDA 378 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~ 378 (689)
+.+++++.|+.|++||+..++.+..+. .|...+.+++|++++.++++++.||.|++|++.+++....+.
T Consensus 190 --------~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~-- 258 (289)
T cd00200 190 --------EKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS-- 258 (289)
T ss_pred --------CEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcc--
Confidence 688888889999999999887777654 467799999999999999888889999999998766553332
Q ss_pred HHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 379 ELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 379 ~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.|...|.+++|++++.+|++++.||.+
T Consensus 259 -----------~~~~~i~~~~~~~~~~~l~~~~~d~~i 285 (289)
T cd00200 259 -----------GHTNSVTSLAWSPDGKRLASGSADGTI 285 (289)
T ss_pred -----------ccCCcEEEEEECCCCCEEEEecCCCeE
Confidence 455679999999999999999999988
No 40
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.97 E-value=6.1e-31 Score=255.84 Aligned_cols=292 Identities=18% Similarity=0.237 Sum_probs=257.3
Q ss_pred cceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 55 TQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
..++.+.+++|.+.|.|+++.|...+|++|+.|++|.|||+.++ +...++.+|...|..+++|
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg-----------------~LkltltGhi~~vr~vavS 202 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG-----------------QLKLTLTGHIETVRGVAVS 202 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC-----------------eEEEeecchhheeeeeeec
Confidence 35777888999999999999999999999999999999999999 7889999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
+-..||++++.|+.|++||++..+.++.+.+|-+.|.|++.+|.-..|++++.|.++++||+++...+..+.+|...
T Consensus 203 ~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~--- 279 (460)
T KOG0285|consen 203 KRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNP--- 279 (460)
T ss_pred ccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCc---
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
+.++.+.|-.-.+++++. +..+++|+....+....+..|...+.+++.+|..
T Consensus 280 ---V~~V~~~~~dpqvit~S~----D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e--------------------- 331 (460)
T KOG0285|consen 280 ---VASVMCQPTDPQVITGSH----DSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKE--------------------- 331 (460)
T ss_pred ---ceeEEeecCCCceEEecC----CceEEEeeeccCceeEeeecccceeeEEecCCch---------------------
Confidence 888888887777777765 5678899999999999999999999999999986
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
..+|+++.| .|+-|++..+..+..+ ..|..-|++|+...|| ++++|+++|.|.+||.+++-..+.
T Consensus 332 ------------~~fASas~d-nik~w~~p~g~f~~nl-sgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~ 396 (460)
T KOG0285|consen 332 ------------NLFASASPD-NIKQWKLPEGEFLQNL-SGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQR 396 (460)
T ss_pred ------------hhhhccCCc-cceeccCCccchhhcc-ccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCccccc
Confidence 677777776 5899999999888874 4688899999998886 678899999999999998765544
Q ss_pred cChHHHHHHHHhccC--CccCceeeeecCchhhhhHhhccccce
Q 040062 375 LSDAELDELKRSRYG--DVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 375 l~~~~~~~~~~~~~g--~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.... ...| .....|.+.+|...|..|+++..|.+|
T Consensus 397 ~~t~-------vqpGSl~sEagI~as~fDktg~rlit~eadKtI 433 (460)
T KOG0285|consen 397 GQTI-------VQPGSLESEAGIFASCFDKTGSRLITGEADKTI 433 (460)
T ss_pred cccc-------ccCCccccccceeEEeecccCceEEeccCCcce
Confidence 3211 1111 122358999999999999999999999
No 41
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.97 E-value=4.3e-30 Score=254.43 Aligned_cols=353 Identities=29% Similarity=0.518 Sum_probs=270.8
Q ss_pred CeeecCceeeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC
Q 040062 1 MIAEKPSWVRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR 79 (689)
Q Consensus 1 M~~~k~~~~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~ 79 (689)
|.-...+...|...+|+++.|.++.. +||||+.|..|+||.+....... ....-+.+..|..|...|++++|+|+|.
T Consensus 1 m~~~~~ei~wH~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--~~~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 1 MEAYPIEISWHDHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--GDMKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred CCceeeEEEecCCCceEEEEeccCcccceecccCccceeeeeeeecCCCC--CceeEEEeecccCCcceeEEEEEcCCcC
Confidence 55555566667777999999999886 99999999999999987632211 1134577888999999999999999999
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
+||||+++|.|.+|....-... .-......+.+.|...+.+.+|...|.+++|++|+.++++++.|+.+++||+..|..
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~-~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l 157 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIF-DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL 157 (434)
T ss_pred eeeecCCCceEEEEEecCcCCc-cccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee
Confidence 9999999999999987642111 000122235678999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC-----------------cccccCCcccEEEEE
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG-----------------HWAKSLGSTFFRRLG 222 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~i~~l~ 222 (689)
...+..|...|..++|+|-++++++-+.|...+.+.+...+.+..... -+.......++++++
T Consensus 158 ~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 158 LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 999999999999999999999999999998778777654433322220 011122346789999
Q ss_pred EcCCCCeEEEecCCCCC-----ccccceeecCCce-eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 223 WSPCGHFITTTHGFQKP-----RHSAPVLERGEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~-----~~~~~i~~~~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
|+|+|..+++..+.-.. ....+++.+.... ....+.+...+...+.|+|-.+.+........
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~------------ 305 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKF------------ 305 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEecccccccc------------
Confidence 99999999987653221 2333455544332 34456667788889999988765543222211
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
.+.-.+++++.-...+.|+|||.++..++......|-..|++++|++||.+|+..|.||...+..|+..|++
T Consensus 306 ----~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~elg 377 (434)
T KOG1009|consen 306 ----LFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWELG 377 (434)
T ss_pred ----ccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhcc
Confidence 111123444444445689999999999999999999999999999999999999999999999999998887
No 42
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=7.5e-30 Score=269.10 Aligned_cols=202 Identities=17% Similarity=0.217 Sum_probs=164.9
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-----CcceeeccCcccc-cCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-----WSLAHRTDGHWAK-SLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-----~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
++|.+.|+.++.+||++.+++++.|.+|++||+.- +.....+...... ..-...+.++.+||||++|+++--
T Consensus 451 ~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLL-- 528 (888)
T KOG0306|consen 451 RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLL-- 528 (888)
T ss_pred hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEec--
Confidence 46888899999999999999999999999998631 1111111111111 112334899999999999999854
Q ss_pred CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
...+.++-..+.+....+.||.-||.++..+|+. +++++|+.|..
T Consensus 529 --dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DS---------------------------------klivTgSADKn 573 (888)
T KOG0306|consen 529 --DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDS---------------------------------KLIVTGSADKN 573 (888)
T ss_pred --cCeEEEEEecceeeeeeecccccceeEEeccCCc---------------------------------CeEEeccCCCc
Confidence 4566688888888889999999999999999987 89999999999
Q ss_pred EEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceee
Q 040062 318 ITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLAN 397 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~ 397 (689)
|+||-++-|.+-..+. .|..+|.++.|-|+..++++++.|+.|+-||-+.-+... .+.+|...|++
T Consensus 574 VKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq-------------~L~~H~~ev~c 639 (888)
T KOG0306|consen 574 VKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQ-------------KLDGHHSEVWC 639 (888)
T ss_pred eEEeccccchhhhhhh-cccCceeEEEEcccceeEEEecCcceEEeechhhhhhhe-------------eeccchheeee
Confidence 9999999998887776 589999999999999999999999999999977655543 33346667999
Q ss_pred eecCchhhhhHhhccccce
Q 040062 398 LAETPAQLLLEAASAKETT 416 (689)
Q Consensus 398 l~~Spdg~~Las~s~DG~v 416 (689)
++.+|+|.+++++|.|.++
T Consensus 640 Lav~~~G~~vvs~shD~sI 658 (888)
T KOG0306|consen 640 LAVSPNGSFVVSSSHDKSI 658 (888)
T ss_pred eEEcCCCCeEEeccCCcee
Confidence 9999999999999999999
No 43
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.6e-29 Score=276.84 Aligned_cols=287 Identities=27% Similarity=0.409 Sum_probs=246.7
Q ss_pred eeeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 59 LATLRDH-FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 59 ~~~l~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
...+..| ...|.|+.|+++|++|++++.|+.+++|+...... .....+.+|...|.+++|+||+
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~---------------~~~~~l~~h~~~v~~~~fs~d~ 215 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS---------------NLLRELSGHTRGVSDVAFSPDG 215 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc---------------hhhccccccccceeeeEECCCC
Confidence 4445444 78899999999999999999999999999965520 2455568899999999999999
Q ss_pred CEEEEEeCCCeEEEEEc-CCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 138 SILASGSLDNTIHIWNM-STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~-~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
+++++++.|++|+|||+ ..+..++.+++|...|++++|+|+++++++|+.|++|+|||++++++...+..+...
T Consensus 216 ~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~----- 290 (456)
T KOG0266|consen 216 SYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDG----- 290 (456)
T ss_pred cEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCc-----
Confidence 99999999999999999 556899999999999999999999999999999999999999999999999988665
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCce--eeeeecCCCCC--EEEEEEcCCcccccccccccccccccccc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA--ATFDFLGHNAP--IIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~h~~~--v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
+..++|++++++|++++. ...+.+|+...+. ....+.++... +.++.|+|++
T Consensus 291 -is~~~f~~d~~~l~s~s~----d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~------------------- 346 (456)
T KOG0266|consen 291 -ISGLAFSPDGNLLVSASY----DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNG------------------- 346 (456)
T ss_pred -eEEEEECCCCCEEEEcCC----CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCC-------------------
Confidence 999999999999999854 5677899998888 45566666555 9999999987
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC--CeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ--SVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.+++++..|+.+++||+..+..+..+...+.. .+.+...++.+.++++|+.|+.|++|++.++.
T Consensus 347 --------------~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~ 412 (456)
T KOG0266|consen 347 --------------KYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG 412 (456)
T ss_pred --------------cEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc
Confidence 89999999999999999999988887754443 45566678899999999999999999999866
Q ss_pred cccccChHHHHHHHHhccCCc-cCceeeeecCchhhhhHhhc--cccce
Q 040062 371 LGHRLSDAELDELKRSRYGDV-RGRLANLAETPAQLLLEAAS--AKETT 416 (689)
Q Consensus 371 l~~~l~~~~~~~~~~~~~g~~-~~~I~~l~~Spdg~~Las~s--~DG~v 416 (689)
....+ ..| ...+..+.+++...++++++ .|+.+
T Consensus 413 ~~~~l-------------~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 413 ILQRL-------------EGHSKAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred hhhhh-------------cCCCCCceeccccCCCcCeeeecCcCCCceE
Confidence 55333 335 66799999999999999998 56666
No 44
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.4e-31 Score=244.93 Aligned_cols=287 Identities=17% Similarity=0.224 Sum_probs=247.9
Q ss_pred eeecCceEEEEEEcC---CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 9 VRHEGMQIFSIDVQP---GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 9 ~~H~g~~I~si~~sp---dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
-+|. .+|..++||| +|.+|++++.|+.-.+-+-++ +.-+-+|.+|.+.|....++.+...-|+++
T Consensus 11 ~ght-rpvvdl~~s~itp~g~flisa~kd~~pmlr~g~t-----------gdwigtfeghkgavw~~~l~~na~~aasaa 78 (334)
T KOG0278|consen 11 HGHT-RPVVDLAFSPITPDGYFLISASKDGKPMLRNGDT-----------GDWIGTFEGHKGAVWSATLNKNATRAASAA 78 (334)
T ss_pred cCCC-cceeEEeccCCCCCceEEEEeccCCCchhccCCC-----------CCcEEeeeccCcceeeeecCchhhhhhhhc
Confidence 4677 6999999985 899999999999888877665 888999999999999999999998999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEEe
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTAVLR 164 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~~l~ 164 (689)
.|=+-+|||.-++... ..+ .|..-|..++|+.|.++|++|+.+..++|||++.. .+...+.
T Consensus 79 adftakvw~a~tgdel-----------------hsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ 140 (334)
T KOG0278|consen 79 ADFTAKVWDAVTGDEL-----------------HSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEIS 140 (334)
T ss_pred ccchhhhhhhhhhhhh-----------------hhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhc
Confidence 9999999999988433 333 38889999999999999999999999999999874 4577889
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
+|.+.|+.+.|....+.|+++++|++||+||.+++..++.+..... +.++..+++|.+|.++.+ ..+.
T Consensus 141 ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~-------VtSlEvs~dG~ilTia~g-----ssV~ 208 (334)
T KOG0278|consen 141 GHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP-------VTSLEVSQDGRILTIAYG-----SSVK 208 (334)
T ss_pred CCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC-------CcceeeccCCCEEEEecC-----ceeE
Confidence 9999999999999999999999999999999999999998876543 789999999999999876 5677
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
+|+...+.....+. -...|.+...+|+. .++++|++|..++.||..
T Consensus 209 Fwdaksf~~lKs~k-~P~nV~SASL~P~k---------------------------------~~fVaGged~~~~kfDy~ 254 (334)
T KOG0278|consen 209 FWDAKSFGLLKSYK-MPCNVESASLHPKK---------------------------------EFFVAGGEDFKVYKFDYN 254 (334)
T ss_pred Eeccccccceeecc-CccccccccccCCC---------------------------------ceEEecCcceEEEEEecc
Confidence 78777665543332 23345566666654 899999999999999999
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++..+..+...|.++|.|+.|+|||...++||+||+|++|....++-
T Consensus 255 TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 255 TGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred CCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 99999887678899999999999999999999999999999876543
No 45
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.7e-30 Score=249.37 Aligned_cols=287 Identities=21% Similarity=0.270 Sum_probs=234.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+-+-|..|||||++|++|+-||.|.+||+.+....- + -..+....|.-|...|.|+.|+.|...||+|+.||.|++|
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrK--D-LkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW 290 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRK--D-LKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW 290 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhh--h-hhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence 468899999999999999999999999997621100 0 0111222344578899999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
.+.++ .+++.|. .|+..|+|+.||.|++.+++++.|.++++.-+.+|++++.+++|++.|+.
T Consensus 291 ri~tG-----------------~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 291 RIETG-----------------QCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred EEecc-----------------hHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999 4555554 79999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
..|.+||.++++++.||+|++|+..+.+++.++....
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~------------------------------------------- 390 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG------------------------------------------- 390 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC-------------------------------------------
Confidence 9999999999999999999999999988888776432
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
.+.+|..+-.-|.. ...+++|...++|+|.++. ++.+..+
T Consensus 391 -------~d~~vnsv~~~PKn--------------------------------peh~iVCNrsntv~imn~q-GQvVrsf 430 (508)
T KOG0275|consen 391 -------TDYPVNSVILLPKN--------------------------------PEHFIVCNRSNTVYIMNMQ-GQVVRSF 430 (508)
T ss_pred -------CcccceeEEEcCCC--------------------------------CceEEEEcCCCeEEEEecc-ceEEeee
Confidence 12234444444432 2567777888888888874 4455554
Q ss_pred ccc--CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhh
Q 040062 333 KHF--FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAA 410 (689)
Q Consensus 333 ~~~--h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~ 410 (689)
..+ ..+...+.+.||.|.++++.++|+.++.|.+.+|.+.+.+.. |...+..++-+|...+||+-
T Consensus 431 sSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V-------------hEkdvIGl~HHPHqNllAsY 497 (508)
T KOG0275|consen 431 SSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV-------------HEKDVIGLTHHPHQNLLASY 497 (508)
T ss_pred ccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec-------------ccccccccccCcccchhhhh
Confidence 432 234567788999999999999999999999999999876653 44568899999999999999
Q ss_pred ccccce
Q 040062 411 SAKETT 416 (689)
Q Consensus 411 s~DG~v 416 (689)
+.||.+
T Consensus 498 sEDgll 503 (508)
T KOG0275|consen 498 SEDGLL 503 (508)
T ss_pred cccchh
Confidence 999988
No 46
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=8.1e-29 Score=290.90 Aligned_cols=325 Identities=15% Similarity=0.197 Sum_probs=241.9
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcc
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIE 113 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 113 (689)
+|.+++|+....... .......+..|.+.|.+++|+|+|++||+|+.|+.|+||++........ ..
T Consensus 457 ~gl~~~~~~~~~~~~------~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~-------~~- 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVK------ADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR-------DI- 522 (793)
T ss_pred hhhhhhhcccceEEE------EeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc-------cc-
Confidence 567888887751100 0001123446899999999999999999999999999999864210000 00
Q ss_pred cceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeE
Q 040062 114 NWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTV 191 (689)
Q Consensus 114 ~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I 191 (689)
......+. +...|.+++|++. +.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++.+|++++.|++|
T Consensus 523 -~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v 600 (793)
T PLN00181 523 -HYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSV 600 (793)
T ss_pred -ccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEE
Confidence 01122333 3467999999874 67999999999999999999999999999999999999997 78999999999999
Q ss_pred EEEECCCCcceeeccCcccccCCcccEEEEEEc-CCCCeEEEecCCCCCccccceeecCCce-eeeeecCCCCCEEEEEE
Q 040062 192 IIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS-PCGHFITTTHGFQKPRHSAPVLERGEWA-ATFDFLGHNAPIIVVKF 269 (689)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~h~~~v~~v~f 269 (689)
++||++++..+..+..+ ..+.++.|+ ++|.++++++. ...+.+|+..... ....+.+|...|..+.|
T Consensus 601 ~iWd~~~~~~~~~~~~~-------~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f 669 (793)
T PLN00181 601 KLWSINQGVSIGTIKTK-------ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRF 669 (793)
T ss_pred EEEECCCCcEEEEEecC-------CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCCCEEEEEE
Confidence 99999988877766532 137788885 57899998876 3567789876544 34567799999999999
Q ss_pred cCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC------CceEEecccCCCCeEEE
Q 040062 270 NHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP------RPLFVAKHFFTQSVVDL 343 (689)
Q Consensus 270 sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~------~~~~~~~~~h~~~V~~l 343 (689)
.+. .+|++++.|+.|+|||+..+ .++..+. .|...+.++
T Consensus 670 ~~~----------------------------------~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i~~v 714 (793)
T PLN00181 670 VDS----------------------------------STLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVKNFV 714 (793)
T ss_pred eCC----------------------------------CEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCeeEE
Confidence 633 68999999999999999753 4455544 578889999
Q ss_pred EEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 344 SWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 344 ~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
+|++++.+|++|+.||.|++|+.........................+...|.+++|++++.+|++|+.||.| +++.
T Consensus 715 ~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I--~i~~ 791 (793)
T PLN00181 715 GLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNI--KILE 791 (793)
T ss_pred EEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcE--EEEe
Confidence 9999999999999999999999764432111000000000001122355579999999999999999999999 5543
No 47
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.8e-29 Score=249.68 Aligned_cols=294 Identities=20% Similarity=0.306 Sum_probs=237.2
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+..+.+..|...|.-+.||++|+|||+++.|.+..||++.... .++..+++.+|..+|..+.|||
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~--------------~~kl~~tlvgh~~~V~yi~wSP 279 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDV--------------HFKLKKTLVGHSQPVSYIMWSP 279 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCc--------------ceeeeeeeecccCceEEEEECC
Confidence 35566788999999999999999999999999999999987652 1378899999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
|.++|++|+.|..+.+||+.+|.+...+.. |...+.+++|.|||..+++|+.|+++..||++.. .....++..
T Consensus 280 DdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr----- 353 (519)
T KOG0293|consen 280 DDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVR----- 353 (519)
T ss_pred CCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccc-----
Confidence 999999999999999999999999888763 4578999999999999999999999999999643 332222221
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
...+.+++.++||+++++... ...++++++...... .+.....++++++.+.++
T Consensus 354 ~~~v~dlait~Dgk~vl~v~~----d~~i~l~~~e~~~dr-~lise~~~its~~iS~d~--------------------- 407 (519)
T KOG0293|consen 354 DPKVHDLAITYDGKYVLLVTV----DKKIRLYNREARVDR-GLISEEQPITSFSISKDG--------------------- 407 (519)
T ss_pred cceeEEEEEcCCCcEEEEEec----ccceeeechhhhhhh-ccccccCceeEEEEcCCC---------------------
Confidence 123889999999999998874 344455554433322 133456788998888776
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC--CeEEEEEcc-CCCeEEEEeCCCcEEEEEeecccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ--SVVDLSWSP-DGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~sp-dg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
+++++.-.+..+++||++..+.+..+.. |.. -+..-||-- +..++++||+|+.|+||+..++++
T Consensus 408 ------------k~~LvnL~~qei~LWDl~e~~lv~kY~G-hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl 474 (519)
T KOG0293|consen 408 ------------KLALVNLQDQEIHLWDLEENKLVRKYFG-HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL 474 (519)
T ss_pred ------------cEEEEEcccCeeEEeecchhhHHHHhhc-ccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce
Confidence 8899999999999999997777766653 443 345556654 558999999999999999999998
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCch-hhhhHhhccccceeeeeeec
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPA-QLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd-g~~Las~s~DG~v~~~~~~~ 423 (689)
...++ +|...|++++|+|. -.++|+||+||+| ++++.
T Consensus 475 l~~Ls-------------GHs~~vNcVswNP~~p~m~ASasDDgtI--RIWg~ 512 (519)
T KOG0293|consen 475 LAVLS-------------GHSKTVNCVSWNPADPEMFASASDDGTI--RIWGP 512 (519)
T ss_pred eEeec-------------CCcceeeEEecCCCCHHHhhccCCCCeE--EEecC
Confidence 86554 47778999999994 5889999999999 77753
No 48
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.9e-29 Score=246.43 Aligned_cols=244 Identities=27% Similarity=0.382 Sum_probs=224.3
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
-+|. +.|..|.|+..|++||+++.|=.+++||.+. ..++++.+.+|...|.++.|-|.|.+|+|++.|.
T Consensus 147 rGHt-~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~----------~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~ 215 (406)
T KOG0295|consen 147 RGHT-DSVFDISFDASGKYLATCSSDLSAKLWDFDT----------FFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDN 215 (406)
T ss_pred hccc-cceeEEEEecCccEEEecCCccchhheeHHH----------HHHHHHHhcCcccceeeEEEEecCCeeeeccccc
Confidence 3677 6899999999999999999998899999986 4688889999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS 168 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~ 168 (689)
+|+.|+++++ .++.++.+|...|..++.+.||.++++++.|.+|++|-+.++++...++.|..
T Consensus 216 tik~We~~tg-----------------~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh 278 (406)
T KOG0295|consen 216 TIKAWECDTG-----------------YCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEH 278 (406)
T ss_pred ceeEEecccc-----------------eeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhcccc
Confidence 9999999998 79999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEccC----------C-----CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 169 LVKGVAWDPI----------G-----SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 169 ~V~~l~~spd----------g-----~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+|.|++|-|. + .++.+++.|++|++||+.++.++.
T Consensus 279 ~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~------------------------------ 328 (406)
T KOG0295|consen 279 PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLF------------------------------ 328 (406)
T ss_pred ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEE------------------------------
Confidence 9999999763 2 489999999999999997764433
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
++.+|...|..++|+|.| +||+++.
T Consensus 329 ----------------------tL~ghdnwVr~~af~p~G---------------------------------kyi~Sca 353 (406)
T KOG0295|consen 329 ----------------------TLVGHDNWVRGVAFSPGG---------------------------------KYILSCA 353 (406)
T ss_pred ----------------------EEecccceeeeeEEcCCC---------------------------------eEEEEEe
Confidence 456788899999999887 8999999
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.|+++++||+++++++..+. .|..-|+++.|+.+..++++|+-|.++++|..
T Consensus 354 DDktlrvwdl~~~~cmk~~~-ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 354 DDKTLRVWDLKNLQCMKTLE-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred cCCcEEEEEeccceeeeccC-CCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999998877 68999999999999999999999999999963
No 49
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=3e-30 Score=249.81 Aligned_cols=271 Identities=24% Similarity=0.404 Sum_probs=231.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|+|+.+. ...+++|..|++|+|||..+ ..++..+.+|.|.|.|+.|. .+.|++|+.|.+|+||
T Consensus 198 kgVYClQYD--D~kiVSGlrDnTikiWD~n~-----------~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvW 262 (499)
T KOG0281|consen 198 KGVYCLQYD--DEKIVSGLRDNTIKIWDKNS-----------LECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVW 262 (499)
T ss_pred CceEEEEec--chhhhcccccCceEEecccc-----------HHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEE
Confidence 469999986 44789999999999999987 78899999999999999995 5699999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE---EEEEecCCCCe
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC---TAVLRGHSSLV 170 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~---~~~l~~h~~~V 170 (689)
|.+++ +.+.++.+|...|..+.|+ +.++++++.|.+|.+||+..... ...+.+|...|
T Consensus 263 Dv~tg-----------------e~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaV 323 (499)
T KOG0281|consen 263 DVNTG-----------------EPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 323 (499)
T ss_pred eccCC-----------------chhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhhe
Confidence 99998 6788889999999999997 56999999999999999987542 34567899999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
..+.|+ .+||++++.|.+|++|++.+.+.++++.+|... |.++ -..|+++++++. ...+++|+...
T Consensus 324 NvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRG------IACl--QYr~rlvVSGSS----DntIRlwdi~~ 389 (499)
T KOG0281|consen 324 NVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRG------IACL--QYRDRLVVSGSS----DNTIRLWDIEC 389 (499)
T ss_pred eeeccc--cceEEEecCCceEEEEeccceeeehhhhccccc------ceeh--hccCeEEEecCC----CceEEEEeccc
Confidence 999987 679999999999999999999999999998665 4433 346888888776 46778999999
Q ss_pred ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~ 330 (689)
..+...+.||+.-|.++.|.. +.+++|+.||+|+|||+..+....
T Consensus 390 G~cLRvLeGHEeLvRciRFd~-----------------------------------krIVSGaYDGkikvWdl~aaldpr 434 (499)
T KOG0281|consen 390 GACLRVLEGHEELVRCIRFDN-----------------------------------KRIVSGAYDGKIKVWDLQAALDPR 434 (499)
T ss_pred cHHHHHHhchHHhhhheeecC-----------------------------------ceeeeccccceEEEEecccccCCc
Confidence 999889999999999999964 479999999999999998764331
Q ss_pred E--------ecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 331 V--------AKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 331 ~--------~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
. ....|.+.|..+.|. ...+++++.|.+|.||||..+
T Consensus 435 a~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 435 APASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCC
Confidence 1 112367889999984 578999999999999999764
No 50
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-29 Score=268.53 Aligned_cols=263 Identities=18% Similarity=0.268 Sum_probs=211.2
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcC----------------------------CC-C-------CCC--
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSV----------------------------GK-N-------FEN-- 51 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~----------------------------~~-~-------~~~-- 51 (689)
.|.| .|++|.||+||+|||+||.|+.|+||.+... .. . ...
T Consensus 265 ah~g-aIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~ 343 (712)
T KOG0283|consen 265 AHKG-AIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGS 343 (712)
T ss_pred ccCC-cEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccccc
Confidence 6885 9999999999999999999999999987650 00 0 000
Q ss_pred -----------CcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEE
Q 040062 52 -----------DESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120 (689)
Q Consensus 52 -----------~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (689)
..-..+.++.+.+|.+.|..+.||.++ +|++++.|++|+||++... .++..
T Consensus 344 ~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~-----------------~CL~~ 405 (712)
T KOG0283|consen 344 QSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRK-----------------ECLKV 405 (712)
T ss_pred CCccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCc-----------------ceeeE
Confidence 011245677889999999999999765 8999999999999999876 45555
Q ss_pred EecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 121 LRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 121 l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
|. |..-|+|++|+| |.+||++|+.|+.|+||++...+.+.....+ ..|++++|.|||++.+.|+.+|.+++|++...
T Consensus 406 F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~l 483 (712)
T KOG0283|consen 406 FS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGL 483 (712)
T ss_pred Ee-cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCC
Confidence 54 999999999999 6789999999999999999888877776644 88999999999999999999999999999876
Q ss_pred cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccc
Q 040062 200 SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~ 279 (689)
+........... .. -..|. .|+.+.|.|..
T Consensus 484 k~~~~~~I~~~~--------------------------------------~K-----k~~~~-rITG~Q~~p~~------ 513 (712)
T KOG0283|consen 484 KLVSDFHIRLHN--------------------------------------KK-----KKQGK-RITGLQFFPGD------ 513 (712)
T ss_pred eEEEeeeEeecc--------------------------------------Cc-----cccCc-eeeeeEecCCC------
Confidence 655544322110 00 01133 79999998874
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC-CeEEEEEccCCCeEEEEeCC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ-SVVDLSWSPDGYSLFACSLD 358 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~L~sgs~D 358 (689)
...+++.+.|..|+|||.+...++..++..+.. .-....|+.||++|+++++|
T Consensus 514 --------------------------~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seD 567 (712)
T KOG0283|consen 514 --------------------------PDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASED 567 (712)
T ss_pred --------------------------CCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecC
Confidence 235777789999999999999998888876553 34677899999999999999
Q ss_pred CcEEEEEeecc
Q 040062 359 GTVANFHFEVK 369 (689)
Q Consensus 359 G~I~vwd~~~~ 369 (689)
..|++|+++..
T Consensus 568 s~VYiW~~~~~ 578 (712)
T KOG0283|consen 568 SWVYIWKNDSF 578 (712)
T ss_pred ceEEEEeCCCC
Confidence 99999998653
No 51
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=1.8e-28 Score=240.87 Aligned_cols=283 Identities=22% Similarity=0.377 Sum_probs=239.5
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC---CEEEEEeC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG---RYIASGSD 86 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg---~~Lasgs~ 86 (689)
.|. +.|.++... +++|++|++||.++|||.+ ++...++.+|.++|.+++|.-.. ..|++++.
T Consensus 103 ~hd-DWVSsv~~~--~~~IltgsYDg~~riWd~~------------Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~ 167 (423)
T KOG0313|consen 103 LHD-DWVSSVKGA--SKWILTGSYDGTSRIWDLK------------GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASM 167 (423)
T ss_pred cch-hhhhhhccc--CceEEEeecCCeeEEEecC------------CceEEEEecCCcceeeeEEEecCCccceEEEecC
Confidence 366 688888887 7899999999999999997 68999999999999999986433 36999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC-----------
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS----------- 155 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~----------- 155 (689)
|.++++|..+.+.... +......||...|.++...+++..+++|+.|..|.||+..
T Consensus 168 Dqtl~Lw~~~~~~~~~-------------~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 168 DQTLRLWKWNVGENKV-------------KALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred CceEEEEEecCchhhh-------------hHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 9999999998764221 2333444999999999999999999999999999999932
Q ss_pred --------------CCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 156 --------------TGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 156 --------------~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
++.++..+.+|..+|.++.|++ ...+++++.|.+|+.||+.++.....+..... +.++
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-------l~~i 306 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-------LNCI 306 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc-------eeEe
Confidence 1235667889999999999987 77899999999999999999998888765533 8999
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCc---eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEW---AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~---~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
..+|..+.|++++. ...+++|+.+.. ...+.|.+|.+.|..+.|+|..
T Consensus 307 ~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~------------------------- 357 (423)
T KOG0313|consen 307 SYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTN------------------------- 357 (423)
T ss_pred ecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchhhhhheecCCCC-------------------------
Confidence 99999999999876 456678876554 3567899999999999999984
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCC-ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPR-PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
..+|++|+.|+++++||+++.+ +++.+. .|...|.++.|.. +.+|++|+.|.+|+|+.-
T Consensus 358 -------~~~~~S~S~D~t~klWDvRS~k~plydI~-~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 358 -------EFQLVSGSYDNTVKLWDVRSTKAPLYDIA-GHNDKVLSVDWNE-GGLIVSGGADNKLRIFKG 417 (423)
T ss_pred -------ceEEEEEecCCeEEEEEeccCCCcceeec-cCCceEEEEeccC-CceEEeccCcceEEEecc
Confidence 3789999999999999999988 888776 5799999999974 678999999999999864
No 52
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=1.4e-29 Score=255.92 Aligned_cols=289 Identities=16% Similarity=0.235 Sum_probs=239.8
Q ss_pred cceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 55 TQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
..+.+.++.+|...|+++.|.| .+.+|++++.|+.|+||++-... ++++++.+|..+|.+++|
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~----------------~~lrtf~gH~k~Vrd~~~ 266 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR----------------RCLRTFKGHRKPVRDASF 266 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc----------------ceehhhhcchhhhhhhhc
Confidence 3577889999999999999999 89999999999999999998742 789999999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
+.+|..|++++.|+.|++||+++|+++..+. ....+.|+.|+|++ +.|++|+.|+.|+.||+++++.++++..+...
T Consensus 267 s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~- 344 (503)
T KOG0282|consen 267 NNCGTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGA- 344 (503)
T ss_pred cccCCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhh-
Confidence 9999999999999999999999999999998 56778999999998 89999999999999999999999999887665
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeee-ecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFD-FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
+..+.|-++|+++++++.+ ..+++|+.+....... ...+.-...++..+|++
T Consensus 345 -----i~~i~F~~~g~rFissSDd----ks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~------------------ 397 (503)
T KOG0282|consen 345 -----ILDITFVDEGRRFISSSDD----KSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNG------------------ 397 (503)
T ss_pred -----eeeeEEccCCceEeeeccC----ccEEEEEcCCCccchhhcchhhccCcceecCCCC------------------
Confidence 8999999999999998764 4777887655433211 11222334456666665
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE--EecccCC--CCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF--VAKHFFT--QSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~--~~~~~h~--~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.++++=+.|+.|.+|.+...-.+. ....+|. +.-..+.|||||.+|++|+.||.+.+||.+
T Consensus 398 ---------------~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 398 ---------------KWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ---------------CeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeech
Confidence 899999999999999876442221 1122333 446778999999999999999999999999
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchh-hhhHhhccccce
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ-LLLEAASAKETT 416 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg-~~Las~s~DG~v 416 (689)
+.++.. ....|.+.+..+.|+|.. ..+|+++.||.|
T Consensus 463 t~kl~~-------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~I 499 (503)
T KOG0282|consen 463 TTKLVS-------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLI 499 (503)
T ss_pred hhhhhh-------------ccccCCcceEEEEecCCCcceeEecccCcee
Confidence 877763 344577789999999964 789999999998
No 53
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=1.2e-28 Score=231.02 Aligned_cols=281 Identities=23% Similarity=0.385 Sum_probs=242.2
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-C
Q 040062 60 ATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-S 138 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~ 138 (689)
+.+++|.+.|.+|+|+-+|..|++|+.|+++.+|+++.... ......++|...|-.++|+|.. .
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~---------------~~~~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF---------------RKELVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh---------------hhhhcccCCCcchhhheeCCCCCc
Confidence 56778999999999999999999999999999999987632 2334467899999999999864 5
Q ss_pred EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 139 ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 139 ~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
.|++++.|.+|++||++.+++...+......+ -++|+|+|++++.++.|..|.+.|.++.+.....+... ++
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~-------e~ 150 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKF-------EV 150 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcccc-------ee
Confidence 89999999999999999999999988655555 58899999999999999999999999988877665443 37
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
..++|+-++.+++..++ ...+.++.-...+....+..|.....|+.|+|++
T Consensus 151 ne~~w~~~nd~Fflt~G----lG~v~ILsypsLkpv~si~AH~snCicI~f~p~G------------------------- 201 (313)
T KOG1407|consen 151 NEISWNNSNDLFFLTNG----LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDG------------------------- 201 (313)
T ss_pred eeeeecCCCCEEEEecC----CceEEEEeccccccccccccCCcceEEEEECCCC-------------------------
Confidence 88999988888887766 3456677777888899999999999999999997
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChH
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDA 378 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~ 378 (689)
++||+|+.|..+.+||++..-+++.+.. +.-+|..|+||.||++||++|+|..|-|=++++|...+.++
T Consensus 202 --------ryfA~GsADAlvSLWD~~ELiC~R~isR-ldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~-- 270 (313)
T KOG1407|consen 202 --------RYFATGSADALVSLWDVDELICERCISR-LDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP-- 270 (313)
T ss_pred --------ceEeeccccceeeccChhHhhhheeecc-ccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee--
Confidence 8999999999999999998888887765 57899999999999999999999999999999998776553
Q ss_pred HHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 379 ELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 379 ~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
+.+.-..++|+|...+||.+.+|..
T Consensus 271 ------------~~~~t~tVAWHPk~~LLAyA~ddk~ 295 (313)
T KOG1407|consen 271 ------------CEGPTFTVAWHPKRPLLAYACDDKD 295 (313)
T ss_pred ------------ccCCceeEEecCCCceeeEEecCCC
Confidence 4557899999999999998877654
No 54
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.1e-27 Score=234.46 Aligned_cols=290 Identities=13% Similarity=0.195 Sum_probs=242.1
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+|. ..|+|+.|+.||.+||||+-+|.|+||...+ +.....+...-..|.-+.|+|.+..|+.|+.||
T Consensus 103 tgHK-DSVt~~~FshdgtlLATGdmsG~v~v~~~st-----------g~~~~~~~~e~~dieWl~WHp~a~illAG~~DG 170 (399)
T KOG0296|consen 103 TGHK-DSVTCCSFSHDGTLLATGDMSGKVLVFKVST-----------GGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDG 170 (399)
T ss_pred cCCC-CceEEEEEccCceEEEecCCCccEEEEEccc-----------CceEEEeecccCceEEEEecccccEEEeecCCC
Confidence 4677 7999999999999999999999999999987 666666665667788899999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC-C
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH-S 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h-~ 167 (689)
.+-+|.+.+. ...+.+.+|..++++=.|.|||+.++++..||+|++||+.+++++..+.+. .
T Consensus 171 svWmw~ip~~-----------------~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~ 233 (399)
T KOG0296|consen 171 SVWMWQIPSQ-----------------ALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEG 233 (399)
T ss_pred cEEEEECCCc-----------------ceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEeccccc
Confidence 9999999876 577889999999999999999999999999999999999999999888743 3
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC--cccccCCcccEEEEEEcCCC---CeEEEecCCCCCccc
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG--HWAKSLGSTFFRRLGWSPCG---HFITTTHGFQKPRHS 242 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~i~~l~~spdg---~~l~~~~~~~~~~~~ 242 (689)
....++.++.++..++.|+.++.+++-+..+++.+..... +.........+.++.+.|.. ...+++ .....
T Consensus 234 ~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G----~vdG~ 309 (399)
T KOG0296|consen 234 LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACG----SVDGT 309 (399)
T ss_pred CcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcc----cccce
Confidence 4567889999999999999999999999888888776653 11111122234455555443 333333 34567
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
+.+|+...+.....+ .|...|..+.|-+. .+|++++.+|.|+.||
T Consensus 310 i~iyD~a~~~~R~~c-~he~~V~~l~w~~t----------------------------------~~l~t~c~~g~v~~wD 354 (399)
T KOG0296|consen 310 IAIYDLAASTLRHIC-EHEDGVTKLKWLNT----------------------------------DYLLTACANGKVRQWD 354 (399)
T ss_pred EEEEecccchhheec-cCCCceEEEEEcCc----------------------------------chheeeccCceEEeee
Confidence 788988877766554 47888999999874 6899999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.++++.++.+. +|...|.+++++|++++++++|.|++.+||+..
T Consensus 355 aRtG~l~~~y~-GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 355 ARTGQLKFTYT-GHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred ccccceEEEEe-cCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 99999999886 689999999999999999999999999999864
No 55
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=252.96 Aligned_cols=289 Identities=19% Similarity=0.285 Sum_probs=253.6
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
-.+.+|. ..|.+++||.|...+++|+. +.|+||+..+ .++++++... .+.|..|-|.++++++|.
T Consensus 367 i~~~GHR-~dVRsl~vS~d~~~~~Sga~-~SikiWn~~t-----------~kciRTi~~~--y~l~~~Fvpgd~~Iv~G~ 431 (888)
T KOG0306|consen 367 IEIGGHR-SDVRSLCVSSDSILLASGAG-ESIKIWNRDT-----------LKCIRTITCG--YILASKFVPGDRYIVLGT 431 (888)
T ss_pred eeeccch-hheeEEEeecCceeeeecCC-CcEEEEEccC-----------cceeEEeccc--cEEEEEecCCCceEEEec
Confidence 3567898 69999999999988888766 7899999997 7889888643 899999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-----CeE-
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-----GIC- 159 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-----~~~- 159 (689)
..|.+.+||+.+. ..+.+.+.|++.|+.++.+||+..+++|+.|.+|++||..- +..
T Consensus 432 k~Gel~vfdlaS~-----------------~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~ 494 (888)
T KOG0306|consen 432 KNGELQVFDLASA-----------------SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQK 494 (888)
T ss_pred cCCceEEEEeehh-----------------hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccc
Confidence 9999999999887 46667779999999999999999999999999999999741 111
Q ss_pred -EEEEe-----cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 160 -TAVLR-----GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 160 -~~~l~-----~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+..+. .-...|.|+.++||+++|+.+--|.+|+||-+++.+....+.+|..+ +.++..|||++.++++
T Consensus 495 k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLP------V~smDIS~DSklivTg 568 (888)
T KOG0306|consen 495 KVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLP------VLSMDISPDSKLIVTG 568 (888)
T ss_pred eeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccc------eeEEeccCCcCeEEec
Confidence 11111 13478999999999999999999999999999999998888888776 9999999999999999
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
+.+ ..+.+|...-..+...+.+|...|.++.|-|.. .+++++|
T Consensus 569 SAD----KnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~---------------------------------~~FFt~g 611 (888)
T KOG0306|consen 569 SAD----KNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKT---------------------------------HLFFTCG 611 (888)
T ss_pred cCC----CceEEeccccchhhhhhhcccCceeEEEEcccc---------------------------------eeEEEec
Confidence 874 566799988888888999999999999999975 6899999
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.|+.|+-||-..-+.+..+.. |...|++++.+|+|.+++++|.|.+|++|.-....
T Consensus 612 KD~kvKqWDg~kFe~iq~L~~-H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLDG-HHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred CcceEEeechhhhhhheeecc-chheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence 999999999999999988864 77789999999999999999999999999865533
No 56
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=2.3e-27 Score=223.09 Aligned_cols=292 Identities=15% Similarity=0.180 Sum_probs=236.4
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+|+ .+|+-+.|+.+|.+|.+++.|....+|-..+ ++.+-++.+|.+.|.|+..+-+.++|++|+.|.
T Consensus 7 ~GHE-RplTqiKyN~eGDLlFscaKD~~~~vw~s~n-----------GerlGty~GHtGavW~~Did~~s~~liTGSAD~ 74 (327)
T KOG0643|consen 7 QGHE-RPLTQIKYNREGDLLFSCAKDSTPTVWYSLN-----------GERLGTYDGHTGAVWCCDIDWDSKHLITGSADQ 74 (327)
T ss_pred ccCc-cccceEEecCCCcEEEEecCCCCceEEEecC-----------CceeeeecCCCceEEEEEecCCcceeeeccccc
Confidence 4688 6999999999999999999999999998765 899999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-----CCeEEEEEcC-------C
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-----DNTIHIWNMS-------T 156 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-----Dg~I~vwd~~-------~ 156 (689)
++++||+.++ +++..+. ....|..+.|+.+|++++.+.. .+.|.++|++ .
T Consensus 75 t~kLWDv~tG-----------------k~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s 136 (327)
T KOG0643|consen 75 TAKLWDVETG-----------------KQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDS 136 (327)
T ss_pred eeEEEEcCCC-----------------cEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcc
Confidence 9999999999 5666665 5678999999999998777653 4689999998 4
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
.++...+..+.+.++.+-|.|-+++|++|.+||.|.+||++++......
T Consensus 137 ~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s------------------------------- 185 (327)
T KOG0643|consen 137 EEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDS------------------------------- 185 (327)
T ss_pred cCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeec-------------------------------
Confidence 5567778888899999999999999999999999999999886543221
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR 316 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg 316 (689)
-..|...|..++|+++. .++++++.|.
T Consensus 186 --------------------~~~h~~~Ind~q~s~d~---------------------------------T~FiT~s~Dt 212 (327)
T KOG0643|consen 186 --------------------DEEHSSKINDLQFSRDR---------------------------------TYFITGSKDT 212 (327)
T ss_pred --------------------hhhhccccccccccCCc---------------------------------ceEEecccCc
Confidence 12366788888998886 8999999999
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCc--EEEEEeeccccccccChHHHHHHHHhccCCccCc
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT--VANFHFEVKELGHRLSDAELDELKRSRYGDVRGR 394 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~--I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~ 394 (689)
+-++||+.+-..+..+.. ..+|++.+++|....++.|+.... |.-=+-+.++...++...-.++-. .++.+|.++
T Consensus 213 takl~D~~tl~v~Kty~t--e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEi-grvkGHFGP 289 (327)
T KOG0643|consen 213 TAKLVDVRTLEVLKTYTT--ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEI-GRVKGHFGP 289 (327)
T ss_pred cceeeeccceeeEEEeee--cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHh-ccccccccC
Confidence 999999999988888775 778999999998777766553221 111122223322222222112212 455579999
Q ss_pred eeeeecCchhhhhHhhcccccee
Q 040062 395 LANLAETPAQLLLEAASAKETTT 417 (689)
Q Consensus 395 I~~l~~Spdg~~Las~s~DG~v~ 417 (689)
|++++|+|||+..++|+.||.|.
T Consensus 290 INsvAfhPdGksYsSGGEDG~VR 312 (327)
T KOG0643|consen 290 INSVAFHPDGKSYSSGGEDGYVR 312 (327)
T ss_pred cceeEECCCCcccccCCCCceEE
Confidence 99999999999999999999993
No 57
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.9e-28 Score=222.59 Aligned_cols=283 Identities=22% Similarity=0.289 Sum_probs=232.4
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+.++.+..|++.|.+++|+-+|+|.++|+.|++|++|+...+ ..++++.+|...|.+++.+.
T Consensus 7 tkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg-----------------~liktYsghG~EVlD~~~s~ 69 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG-----------------ALIKTYSGHGHEVLDAALSS 69 (307)
T ss_pred chhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc-----------------ceeeeecCCCceeeeccccc
Confidence 3567788999999999999999999999999999999999888 78999999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC--CcceeeccCcccccC
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD--WSLAHRTDGHWAKSL 213 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~--~~~~~~~~~~~~~~~ 213 (689)
|+..|++|+.|..|.+||+.+|+.++.+++|...|..+.|+.+...+++|+.|.++++||.++ .++++.+......
T Consensus 70 Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~-- 147 (307)
T KOG0316|consen 70 DNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDG-- 147 (307)
T ss_pred cccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCc--
Confidence 999999999999999999999999999999999999999999999999999999999999876 4455555443322
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
+.++.. .+..|++++. ...++.++.+.......+.+ .+|+++.|++++
T Consensus 148 ----V~Si~v--~~heIvaGS~----DGtvRtydiR~G~l~sDy~g--~pit~vs~s~d~-------------------- 195 (307)
T KOG0316|consen 148 ----VSSIDV--AEHEIVAGSV----DGTVRTYDIRKGTLSSDYFG--HPITSVSFSKDG-------------------- 195 (307)
T ss_pred ----eeEEEe--cccEEEeecc----CCcEEEEEeecceeehhhcC--CcceeEEecCCC--------------------
Confidence 444433 4556666654 34555666666555555544 589999999987
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC--CeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ--SVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++.+.++.|++|++.|-.+++.+..++. |.. .-.+.+++.....+++|++||.|++||+....+
T Consensus 196 -------------nc~La~~l~stlrLlDk~tGklL~sYkG-hkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~ 261 (307)
T KOG0316|consen 196 -------------NCSLASSLDSTLRLLDKETGKLLKSYKG-HKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ 261 (307)
T ss_pred -------------CEEEEeeccceeeecccchhHHHHHhcc-cccceeeeeeeecccceeEEeccCCceEEEEEecccee
Confidence 8999999999999999999999988764 443 345677888888999999999999999988776
Q ss_pred ccccChHHHHHHHHhccCCccCc-eeeeecCchhhhhHhhccccce
Q 040062 372 GHRLSDAELDELKRSRYGDVRGR-LANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~-I~~l~~Spdg~~Las~s~DG~v 416 (689)
...+. .+... +.++.++|...-|.++...+..
T Consensus 262 ~sk~~-------------~~~~v~v~dl~~hp~~~~f~~A~~~~~~ 294 (307)
T KOG0316|consen 262 ISKLS-------------VVSTVIVTDLSCHPTMDDFITATGHGDL 294 (307)
T ss_pred eeeec-------------cCCceeEEeeecccCccceeEecCCcee
Confidence 64332 23333 7899999988777776655544
No 58
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=4.1e-28 Score=232.05 Aligned_cols=302 Identities=17% Similarity=0.258 Sum_probs=242.1
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCC------CCCCCCc-ccceeeeeecCCCCcEEEEEEcCCCCE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVG------KNFENDE-STQRLLATLRDHFGSVNCVRWAKHGRY 80 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~------~~~~~~~-~~~~~~~~l~~h~~~V~~v~fspdg~~ 80 (689)
...|. .++.+-+|++||.++|||+.|..|+|.|++... .....+. .....+++|-.|...|+++.|+|....
T Consensus 108 lt~HK-~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I 186 (430)
T KOG0640|consen 108 LTSHK-SPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI 186 (430)
T ss_pred Eeecc-cceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence 34577 699999999999999999999999999998321 1111122 223678899999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
|++|+.|++|++||+...... ...........|.+|.|+|.|.+|++|....++++||+++.++.
T Consensus 187 LiS~srD~tvKlFDfsK~saK---------------rA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcf 251 (430)
T KOG0640|consen 187 LISGSRDNTVKLFDFSKTSAK---------------RAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCF 251 (430)
T ss_pred EEeccCCCeEEEEecccHHHH---------------HHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEe
Confidence 999999999999999765322 11112224567999999999999999999999999999998887
Q ss_pred EEE---ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 161 AVL---RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 161 ~~l---~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
..- ..|.+.|+++.+++.+++.++++.||.|+|||--+..++.++.... +...|.+..|..+|+||++.+.
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH----~gsevcSa~Ftkn~kyiLsSG~-- 325 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAH----GGSEVCSAVFTKNGKYILSSGK-- 325 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhc----CCceeeeEEEccCCeEEeecCC--
Confidence 654 3588999999999999999999999999999999999988876543 3445899999999999999865
Q ss_pred CCccccceeecCCceeeeeecCCC--C---CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHN--A---PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~--~---~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
...+.+|+..+......+.|-. + .-+...|+... ++++.-
T Consensus 326 --DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtE---------------------------------dyVl~p 370 (430)
T KOG0640|consen 326 --DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTE---------------------------------DYVLFP 370 (430)
T ss_pred --cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCcc---------------------------------ceEEcc
Confidence 5778899988887776665431 1 11222333322 344433
Q ss_pred -eCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 313 -SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 313 -s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
-..+.+.-||.++...+..+..+|++.+..+.-||.+..+++|+.|-.+++|--
T Consensus 371 DEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred ccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence 345789999999998888888899999999999999999999999999999964
No 59
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-26 Score=221.98 Aligned_cols=290 Identities=19% Similarity=0.248 Sum_probs=230.7
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD- 86 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~- 86 (689)
++.-.+..|.+|.|+++|.+|++++.|..|+|||... +++++++..+.-.|..++|......++.++.
T Consensus 9 ~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~-----------g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 9 VFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLS-----------GKQVKTINSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred ccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCC-----------CceeeEeecccccccEEEEecCCceEEEccCC
Confidence 3333446899999999999999999999999999997 8999999888888999999887777777766
Q ss_pred -CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 87 -DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 87 -Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
|.+|+..++.++ +.++.+.||...|..|+.+|-+..+++++.|++|++||++..++...+..
T Consensus 78 ~d~tIryLsl~dN-----------------kylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~ 140 (311)
T KOG1446|consen 78 EDDTIRYLSLHDN-----------------KYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL 140 (311)
T ss_pred CCCceEEEEeecC-----------------ceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec
Confidence 889999999998 79999999999999999999999999999999999999998888887764
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc--ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS--LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
...+ .++|+|+|-++|++.....|++||++... +..++.... ........+.|||||++|+.+.. ...+
T Consensus 141 ~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~---~~~~ew~~l~FS~dGK~iLlsT~----~s~~ 211 (311)
T KOG1446|consen 141 SGRP--IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITD---NDEAEWTDLEFSPDGKSILLSTN----ASFI 211 (311)
T ss_pred CCCc--ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCC---CCccceeeeEEcCCCCEEEEEeC----CCcE
Confidence 4444 47899999999999988899999998753 222332221 12344789999999999998765 2334
Q ss_pred ceeecCCceeeeeecCCCCCE---EEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 244 PVLERGEWAATFDFLGHNAPI---IVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v---~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
.+++.-.......+.++...- ....|+|++ +++++|+.||+|.+
T Consensus 212 ~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds---------------------------------~Fvl~gs~dg~i~v 258 (311)
T KOG1446|consen 212 YLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS---------------------------------KFVLSGSDDGTIHV 258 (311)
T ss_pred EEEEccCCcEeeeEeeccCCCCcceeEEECCCC---------------------------------cEEEEecCCCcEEE
Confidence 455443333333343332222 455666665 89999999999999
Q ss_pred EeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 321 WTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 321 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
|+++++..+..+...+...+.++.|+|.-.+++++ +..+.+|=.+..
T Consensus 259 w~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 259 WNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred EEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 99999999999988788999999999975555555 567888865543
No 60
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.4e-27 Score=255.46 Aligned_cols=254 Identities=29% Similarity=0.456 Sum_probs=221.3
Q ss_pred CeeecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCE
Q 040062 1 MIAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY 80 (689)
Q Consensus 1 M~~~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~ 80 (689)
|-..-.+|..|.| +|..++|||++.++++||.|.+|++|+.+. .+++.++.+|-..|..+.|++.-.+
T Consensus 40 M~tli~rFdeHdG-pVRgv~FH~~qplFVSGGDDykIkVWnYk~-----------rrclftL~GHlDYVRt~~FHheyPW 107 (1202)
T KOG0292|consen 40 MGTLIDRFDEHDG-PVRGVDFHPTQPLFVSGGDDYKIKVWNYKT-----------RRCLFTLLGHLDYVRTVFFHHEYPW 107 (1202)
T ss_pred hhhHHhhhhccCC-ccceeeecCCCCeEEecCCccEEEEEeccc-----------ceehhhhccccceeEEeeccCCCce
Confidence 3344567889996 999999999999999999999999999997 8999999999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC----
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---- 156 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---- 156 (689)
++|+|+|.+|+||+.++. +++..+.+|...|.|..|+|....+++++.|.+|+|||+..
T Consensus 108 IlSASDDQTIrIWNwqsr-----------------~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk 170 (1202)
T KOG0292|consen 108 ILSASDDQTIRIWNWQSR-----------------KCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKK 170 (1202)
T ss_pred EEEccCCCeEEEEeccCC-----------------ceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhcc
Confidence 999999999999999988 79999999999999999999999999999999999999842
Q ss_pred ----C---------------------eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 157 ----G---------------------ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 157 ----~---------------------~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
+ -.-..+.+|...|.-++|+|.-.+|++|++|+.|++|.+...+
T Consensus 171 ~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetK----------- 239 (1202)
T KOG0292|consen 171 NKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETK----------- 239 (1202)
T ss_pred CCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEecccc-----------
Confidence 1 0123467899999999999999999999999999999985311
Q ss_pred cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
.|+.. ...+|.+.|.++-|+|..
T Consensus 240 ---------------------------------aWEvD------tcrgH~nnVssvlfhp~q------------------ 262 (1202)
T KOG0292|consen 240 ---------------------------------AWEVD------TCRGHYNNVSSVLFHPHQ------------------ 262 (1202)
T ss_pred ---------------------------------ceeeh------hhhcccCCcceEEecCcc------------------
Confidence 12111 356899999999999986
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+++++.++|++|+|||+.....+..+... .+.-+.++-+|..+++++| .|+-+.||.++-
T Consensus 263 ---------------~lIlSnsEDksirVwDm~kRt~v~tfrre-ndRFW~laahP~lNLfAAg-HDsGm~VFkleR 322 (1202)
T KOG0292|consen 263 ---------------DLILSNSEDKSIRVWDMTKRTSVQTFRRE-NDRFWILAAHPELNLFAAG-HDSGMIVFKLER 322 (1202)
T ss_pred ---------------ceeEecCCCccEEEEecccccceeeeecc-CCeEEEEEecCCcceeeee-cCCceEEEEEcc
Confidence 89999999999999999999999988764 5678999999998866655 577788888874
No 61
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.8e-26 Score=206.82 Aligned_cols=304 Identities=22% Similarity=0.320 Sum_probs=242.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCC---CCCCccc-ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKN---FENDEST-QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~---~~~~~~~-~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
..|.+++|+|.|.+.|+|+...+++|......... .+..... .-..+.-+.|.+.|.|.+|+|+|.+|++|+.|++
T Consensus 33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ 112 (350)
T KOG0641|consen 33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKT 112 (350)
T ss_pred hheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCce
Confidence 58999999999999999999999999876543211 1111111 1223344678999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC----CCEEEEEe-CCCeEEEEEcCCCeEEEEEe
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD----DSILASGS-LDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~~Lasgs-~Dg~I~vwd~~~~~~~~~l~ 164 (689)
|++.-++....... ..-..+..|.+.|.+++|-.+ +.+|++++ .|..|++-|..+++.+..+.
T Consensus 113 ik~l~fn~dt~~~~------------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 113 IKVLPFNADTCNAT------------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred EEEEeccccccccc------------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99987765421110 233567789999999999654 45777765 57789999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
+|.+.|.++ ++-++-+|++|+.|.+|++||++-..++..+...+... ..+..+..++..|.|+.|+++.. ....
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~----dssc 255 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA----DSSC 255 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC----CCce
Confidence 999999887 34458899999999999999999888888776554432 34567899999999999999876 4566
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.+++.........+..|...|.++.|+|.. .++++|+.|..|++-|+
T Consensus 256 ~lydirg~r~iq~f~phsadir~vrfsp~a---------------------------------~yllt~syd~~ikltdl 302 (350)
T KOG0641|consen 256 MLYDIRGGRMIQRFHPHSADIRCVRFSPGA---------------------------------HYLLTCSYDMKIKLTDL 302 (350)
T ss_pred EEEEeeCCceeeeeCCCccceeEEEeCCCc---------------------------------eEEEEecccceEEEeec
Confidence 788888888888999999999999999986 79999999999999998
Q ss_pred CCC---CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 324 ASP---RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 324 ~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
... +........|...+..+.|+|..-.+++.+.|.++.+|-+.
T Consensus 303 qgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 303 QGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 643 22222334578888999999999999999999999999764
No 62
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.3e-27 Score=240.27 Aligned_cols=293 Identities=21% Similarity=0.327 Sum_probs=236.5
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCC---CCCC---cccceeeeee-cCCCCcEEEEEEcCCCCE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKN---FEND---ESTQRLLATL-RDHFGSVNCVRWAKHGRY 80 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~---~~~~---~~~~~~~~~l-~~h~~~V~~v~fspdg~~ 80 (689)
...|. .+|.||.++||.++.++++.||+|.=|++.+.... .+.+ ...+..+..- ..|...+.+++.++||+|
T Consensus 138 ~~~H~-~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgky 216 (479)
T KOG0299|consen 138 IGKHQ-LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKY 216 (479)
T ss_pred ecccc-CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcE
Confidence 44577 69999999999999999999999999999875432 1111 0011122222 389999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
||+|+.|..|.||+.++. +.++.+.+|...|.+++|-...+.|++++.|..|++|++.....+
T Consensus 217 latgg~d~~v~Iw~~~t~-----------------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v 279 (479)
T KOG0299|consen 217 LATGGRDRHVQIWDCDTL-----------------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV 279 (479)
T ss_pred EEecCCCceEEEecCccc-----------------chhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence 999999999999999988 567778999999999999988889999999999999999999999
Q ss_pred EEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 161 AVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
.++.+|.+.|.+|....-++.+-+|+.|+++++|++....
T Consensus 280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---------------------------------------- 319 (479)
T KOG0299|consen 280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---------------------------------------- 319 (479)
T ss_pred HHHhCCccceeeechhcccceEEeccccceeEEEeccccc----------------------------------------
Confidence 9999999999999888778888888899999999983211
Q ss_pred cccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 241 HSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
...+.+|.+.+.|++|-.+ ..+++|+.+|.|.+
T Consensus 320 -------------qlifrg~~~sidcv~~In~----------------------------------~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 320 -------------QLIFRGGEGSIDCVAFIND----------------------------------EHFVSGSDNGSIAL 352 (479)
T ss_pred -------------eeeeeCCCCCeeeEEEecc----------------------------------cceeeccCCceEEE
Confidence 1124456778889988765 68999999999999
Q ss_pred EeCCCCCceEEecccCC---C--------CeEEEEEccCCCeEEEEeCCCcEEEEEeecccc-ccccChHHHHHHHHhcc
Q 040062 321 WTTASPRPLFVAKHFFT---Q--------SVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL-GHRLSDAELDELKRSRY 388 (689)
Q Consensus 321 wd~~~~~~~~~~~~~h~---~--------~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l-~~~l~~~~~~~~~~~~~ 388 (689)
|++...+++++....|. . +|++|+..|...++++|+.+|.|++|.++.+-. +..+. .+
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~----------~l 422 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLY----------SL 422 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceee----------ec
Confidence 99999999998876653 2 799999999999999999999999999988722 11111 01
Q ss_pred CCccCceeeeecCchhhhhHhh-ccccce
Q 040062 389 GDVRGRLANLAETPAQLLLEAA-SAKETT 416 (689)
Q Consensus 389 g~~~~~I~~l~~Spdg~~Las~-s~DG~v 416 (689)
.-.+.|+.++|+++|+.|++| +....+
T Consensus 423 -s~~GfVNsl~f~~sgk~ivagiGkEhRl 450 (479)
T KOG0299|consen 423 -SLVGFVNSLAFSNSGKRIVAGIGKEHRL 450 (479)
T ss_pred -ccccEEEEEEEccCCCEEEEeccccccc
Confidence 133479999999999966655 334333
No 63
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.8e-28 Score=235.30 Aligned_cols=311 Identities=17% Similarity=0.242 Sum_probs=249.0
Q ss_pred eeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 9 VRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
.+|. +.|+|++=+|.. ..+|+|+.||.|+|||+.. ..++.++..|.|.|..|++.. ..++++++|
T Consensus 63 ~gHr-dGV~~lakhp~~ls~~aSGs~DG~VkiWnlsq-----------R~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdD 128 (433)
T KOG0268|consen 63 DGHR-DGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQ-----------RECIRTFKAHEGLVRGICVTQ--TSFFTVGDD 128 (433)
T ss_pred cccc-cccchhhcCcchhhhhhccccCceEEEEehhh-----------hhhhheeecccCceeeEEecc--cceEEecCC
Confidence 4687 689999999987 7899999999999999997 889999999999999999987 678999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.+|+.|.++.. ...++. ....+..|.-+..++.+++|+. .|.|||.....++..+.-..
T Consensus 129 KtvK~wk~~~~------------------p~~til-g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~~Pv~smswG~ 187 (433)
T KOG0268|consen 129 KTVKQWKIDGP------------------PLHTIL-GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRDNPVSSMSWGA 187 (433)
T ss_pred cceeeeeccCC------------------cceeee-ccccccccccccccccccccCc--eeeecccccCCccceeecCC
Confidence 99999988752 333343 3445777777777888999885 49999999999999999888
Q ss_pred CCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 168 SLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 168 ~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
..|.++.|+|.. ..|+++..|+.|.+||+++.++++.+..... -+.++|+|.+-.+++++. ++.++.+
T Consensus 188 Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR-------TN~IswnPeafnF~~a~E----D~nlY~~ 256 (433)
T KOG0268|consen 188 DSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR-------TNTICWNPEAFNFVAANE----DHNLYTY 256 (433)
T ss_pred CceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc-------ccceecCccccceeeccc----cccceeh
Confidence 999999999965 5677787999999999999998887765433 478999996666666544 4556666
Q ss_pred ecCCcee-eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 247 ERGEWAA-TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 247 ~~~~~~~-~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
+...... ...+.+|...|..+.|+|.| +-+++|+.|.+|+||.++.
T Consensus 257 DmR~l~~p~~v~~dhvsAV~dVdfsptG---------------------------------~EfvsgsyDksIRIf~~~~ 303 (433)
T KOG0268|consen 257 DMRNLSRPLNVHKDHVSAVMDVDFSPTG---------------------------------QEFVSGSYDKSIRIFPVNH 303 (433)
T ss_pred hhhhhcccchhhcccceeEEEeccCCCc---------------------------------chhccccccceEEEeecCC
Confidence 6655443 33467899999999999998 7899999999999999988
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH-----HHHHhccCCccCceeeee
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD-----ELKRSRYGDVRGRLANLA 399 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~-----~~~~~~~g~~~~~I~~l~ 399 (689)
+...-++...-.+.|.++.||-|.+|+++||+|+.|++|.-...+.+..+...|.. ..++.+|..+. .|..++
T Consensus 304 ~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklgv~t~rEk~~~~Y~e~Lke~y~~~p-eIkRIa 381 (433)
T KOG0268|consen 304 GHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLGVITPREKNKLEYNEALKERYKHLP-EIKRIA 381 (433)
T ss_pred CcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcCCCChhHHHHHHHHHHHHHHHhhcH-HHHHHH
Confidence 77665555444678999999999999999999999999998877766666655443 23455665433 344444
No 64
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=235.83 Aligned_cols=277 Identities=20% Similarity=0.334 Sum_probs=227.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
....|+|+.+. ...+++|..|.+|+|||..+. .+...+.+|++.|.|+.|. .+.|++|+
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~-----------------~c~~~L~GHtGSVLCLqyd--~rviisGS 254 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSL-----------------ECLKILTGHTGSVLCLQYD--ERVIVSGS 254 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccH-----------------HHHHhhhcCCCcEEeeecc--ceEEEecC
Confidence 45679999995 557999999999999998876 6778899999999999994 67999999
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc---eeeccCcccccCCcccEEEE
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~~i~~l 221 (689)
.|.+|+|||+++++++.++-.|...|..+.|+ +.++++++.|.++.+||+..... .+.+-+|... +..+
T Consensus 255 SDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa------VNvV 326 (499)
T KOG0281|consen 255 SDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA------VNVV 326 (499)
T ss_pred CCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh------eeee
Confidence 99999999999999999999999999999998 67999999999999999976542 2334444333 6667
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
.|+ .++|+++++ ...+.+|+..+......+.+|...|.|+.|.
T Consensus 327 dfd--~kyIVsASg----DRTikvW~~st~efvRtl~gHkRGIAClQYr------------------------------- 369 (499)
T KOG0281|consen 327 DFD--DKYIVSASG----DRTIKVWSTSTCEFVRTLNGHKRGIACLQYR------------------------------- 369 (499)
T ss_pred ccc--cceEEEecC----CceEEEEeccceeeehhhhcccccceehhcc-------------------------------
Confidence 665 459999887 4677899999999999999999999999884
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
++++++|++|.+|++||+..|.++..++ +|.+-|.++.|. .+.+++|..||+|+|||+..+.-.......
T Consensus 370 ----~rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~--- 439 (499)
T KOG0281|consen 370 ----DRLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPAST--- 439 (499)
T ss_pred ----CeEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--CceeeeccccceEEEEecccccCCcccccc---
Confidence 4799999999999999999999999876 589999999994 578999999999999999987643322211
Q ss_pred HHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
+.....-.|.++|..+.|. ...|++.+.|.+| -++.
T Consensus 440 -~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtI--LiWd 475 (499)
T KOG0281|consen 440 -LCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTI--LIWD 475 (499)
T ss_pred -hHHHhhhhccceeEEEeec--ceEEEeccCCCeE--EEEE
Confidence 1112233578899999986 5667788888888 4444
No 65
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=6e-26 Score=247.81 Aligned_cols=285 Identities=16% Similarity=0.241 Sum_probs=217.4
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccce---eeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR---LLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVI 90 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~---~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I 90 (689)
.|....+++|+..+++++.+.....|+...... .......++ ....+.+|.+.|++++|+| ++++|++|+.|++|
T Consensus 22 ~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~-v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI 100 (493)
T PTZ00421 22 NVTPSTALWDCSNTIACNDRFIAVPWQQLGSTA-VLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI 100 (493)
T ss_pred ccccccccCCCCCcEeECCceEEEEEecCCceE-EeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence 467777888887788888888888888654211 000011111 1234779999999999999 88999999999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
++||+..+.... .....+..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++.+..+.+|...
T Consensus 101 kIWdi~~~~~~~----------~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~ 170 (493)
T PTZ00421 101 MGWGIPEEGLTQ----------NISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170 (493)
T ss_pred EEEecCCCcccc----------ccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence 999997652110 0113567788999999999999985 69999999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
|.+++|+|++.+|++++.|++|+|||+++++.+..+..+... ....+.|.+++..+++++........+.+|+..
T Consensus 171 V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~-----~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr 245 (493)
T PTZ00421 171 ITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASA-----KSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR 245 (493)
T ss_pred eEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCC-----cceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence 999999999999999999999999999999888777655321 145678999988888776444445678899987
Q ss_pred Cceeeeeec--CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CCCcEEEEeCCCC
Q 040062 250 EWAATFDFL--GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDRTITVWTTASP 326 (689)
Q Consensus 250 ~~~~~~~l~--~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg~I~iwd~~~~ 326 (689)
.....+... .+...+....|++++ ++|++++ .|+.|++||+.++
T Consensus 246 ~~~~p~~~~~~d~~~~~~~~~~d~d~---------------------------------~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 246 KMASPYSTVDLDQSSALFIPFFDEDT---------------------------------NLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred CCCCceeEeccCCCCceEEEEEcCCC---------------------------------CEEEEEEeCCCeEEEEEeeCC
Confidence 654433322 223345555666665 6787777 5999999999999
Q ss_pred CceEEecccCCCCeEEEEEccC
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPD 348 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spd 348 (689)
+++......+...+..++|.|.
T Consensus 293 ~~~~~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 293 RLTFCSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ceEEEeeccCCCCCcceEeccc
Confidence 8877665555667889999884
No 66
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=4.9e-26 Score=213.58 Aligned_cols=286 Identities=19% Similarity=0.293 Sum_probs=243.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEe
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGS 85 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs 85 (689)
...+|. ..|.+++|+-+|.+|++|+.|+++++|+++... ...-....+|.+.|-.++|+| +..+|++++
T Consensus 15 ~~~~~~-~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r---------~~~~~~~~gh~~svdql~w~~~~~d~~atas 84 (313)
T KOG1407|consen 15 ELQGHV-QKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR---------FRKELVYRGHTDSVDQLCWDPKHPDLFATAS 84 (313)
T ss_pred Hhhhhh-hcceEEEEcccCceeeecccCCceEEEEecchh---------hhhhhcccCCCcchhhheeCCCCCcceEEec
Confidence 445677 599999999999999999999999999998621 122234568999999999998 667999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|.+|++||.+.+ ++......... =.-+.|+|+|.++++++.|..|.+.|.++.+.....+
T Consensus 85 ~dk~ir~wd~r~~-----------------k~~~~i~~~~e-ni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~- 145 (313)
T KOG1407|consen 85 GDKTIRIWDIRSG-----------------KCTARIETKGE-NINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ- 145 (313)
T ss_pred CCceEEEEEeccC-----------------cEEEEeeccCc-ceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-
Confidence 9999999999988 45555553333 3457899999999999999999999999988877766
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
....+..++|+-++.+|+.....|.|.|-.....+.+..++.|... ..++.|+|+|+++++++. ...+.+
T Consensus 146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~sn------CicI~f~p~GryfA~GsA----DAlvSL 215 (313)
T KOG1407|consen 146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSN------CICIEFDPDGRYFATGSA----DALVSL 215 (313)
T ss_pred ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcc------eEEEEECCCCceEeeccc----cceeec
Confidence 5567788999988888887777899999999999999999888654 789999999999999877 567779
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
|+..+..+...+..++-+|..+.|+.++ ++||+|++|..|-|=++++
T Consensus 216 WD~~ELiC~R~isRldwpVRTlSFS~dg---------------------------------~~lASaSEDh~IDIA~vet 262 (313)
T KOG1407|consen 216 WDVDELICERCISRLDWPVRTLSFSHDG---------------------------------RMLASASEDHFIDIAEVET 262 (313)
T ss_pred cChhHhhhheeeccccCceEEEEeccCc---------------------------------ceeeccCccceEEeEeccc
Confidence 9999999999999999999999999887 8999999999999999999
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCC---------CcEEEEEe
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD---------GTVANFHF 366 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D---------G~I~vwd~ 366 (689)
|..+..++ +.++...++|+|...+||.++.| |.+++|-+
T Consensus 263 Gd~~~eI~--~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 263 GDRVWEIP--CEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred CCeEEEee--ccCCceeEEecCCCceeeEEecCCCCccccccceeEEecC
Confidence 99999886 48889999999999999887754 45666654
No 67
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=9e-27 Score=236.05 Aligned_cols=279 Identities=23% Similarity=0.335 Sum_probs=233.5
Q ss_pred ceEEEEEEcCCCCE-EEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALR-FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~-Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
++|.+++|+|...+ +|+.++ -.+.||+..+ .....++......|.++.|..||++||.|+..|.|+|
T Consensus 27 ~~vssl~fsp~~P~d~aVt~S-~rvqly~~~~-----------~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~v 94 (487)
T KOG0310|consen 27 NSVSSLCFSPKHPYDFAVTSS-VRVQLYSSVT-----------RSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKV 94 (487)
T ss_pred CcceeEecCCCCCCceEEecc-cEEEEEecch-----------hhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEE
Confidence 58999999996543 455444 5799999886 5566667777889999999999999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
||+.+. ..++.+.+|+.+|..+.|+|++. .|++|+.|+.+++||+.+......+.+|++.|.
T Consensus 95 fD~k~r-----------------~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR 157 (487)
T KOG0310|consen 95 FDMKSR-----------------VILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR 157 (487)
T ss_pred eccccH-----------------HHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE
Confidence 996653 35667889999999999999754 888899999999999999988778999999999
Q ss_pred EEEEccCC-CEEEEEeCCCeEEEEECCCC-cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDW-SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 172 ~l~~spdg-~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
|.+|+|.. .+++||+.||.|++||++.. ..+.++... ..|.++.+.|.|..|+++++ ..+.+|+..
T Consensus 158 ~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg-------~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~ 225 (487)
T KOG0310|consen 158 CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHG-------CPVESVLALPSGSLIASAGG-----NSVKVWDLT 225 (487)
T ss_pred eeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCC-------CceeeEEEcCCCCEEEEcCC-----CeEEEEEec
Confidence 99999965 58899999999999999986 444444432 23899999999999999987 678899987
Q ss_pred Cce-eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 250 EWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 250 ~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
... ....+..|...|+|+++..++ ..|++|+-|+.+++||+.+-+.
T Consensus 226 ~G~qll~~~~~H~KtVTcL~l~s~~---------------------------------~rLlS~sLD~~VKVfd~t~~Kv 272 (487)
T KOG0310|consen 226 TGGQLLTSMFNHNKTVTCLRLASDS---------------------------------TRLLSGSLDRHVKVFDTTNYKV 272 (487)
T ss_pred CCceehhhhhcccceEEEEEeecCC---------------------------------ceEeecccccceEEEEccceEE
Confidence 444 444445599999999998775 7899999999999999888877
Q ss_pred eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 329 LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+..+. ..++|.+++.+||++.++.|-.||.+.+-+...
T Consensus 273 v~s~~--~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 273 VHSWK--YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred EEeee--cccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 77665 378999999999999999999999988765443
No 68
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=2.4e-25 Score=245.67 Aligned_cols=260 Identities=22% Similarity=0.333 Sum_probs=211.4
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcC--CCC-----CCCCcccceeeeeecCCCCcEEEEEEcCCCCEE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSV--GKN-----FENDESTQRLLATLRDHFGSVNCVRWAKHGRYI 81 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~--~~~-----~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~L 81 (689)
..|.| .|.|+.|+|||++||+|+.|+.|.||..... ... ...+.+..+....+.+|.+.|..++|+|++.+|
T Consensus 66 ~~h~~-sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~l 144 (942)
T KOG0973|consen 66 DDHDG-SVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLL 144 (942)
T ss_pred ccccC-ceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEE
Confidence 46884 9999999999999999999999999998831 111 233445688999999999999999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
++++.|++|.||+..+. +.+..+++|...|..+.|.|-|+|||+-+.|++|+||++.+....+
T Consensus 145 vS~s~DnsViiwn~~tF-----------------~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k 207 (942)
T KOG0973|consen 145 VSVSLDNSVIIWNAKTF-----------------ELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK 207 (942)
T ss_pred EEecccceEEEEccccc-----------------eeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE
Confidence 99999999999998876 7899999999999999999999999999999999999988877777
Q ss_pred EEecCC------CCeEEEEEccCCCEEEEEe----CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC-----
Q 040062 162 VLRGHS------SLVKGVAWDPIGSFIASQS----DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC----- 226 (689)
Q Consensus 162 ~l~~h~------~~V~~l~~spdg~~las~s----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd----- 226 (689)
.+..+. ..+..+.|+|||.+|++.. .-.++.|.+-.+++....+-+|... +..+.|+|.
T Consensus 208 ~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p------~evvrFnP~lfe~~ 281 (942)
T KOG0973|consen 208 SITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAP------VEVVRFNPKLFERN 281 (942)
T ss_pred eeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCc------eEEEEeChHHhccc
Confidence 776543 4678899999999999864 2347899999999888888887665 788888872
Q ss_pred ---C-------Ce-EEEecCCCCCccccceeecCCceeeeeec-CCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 227 ---G-------HF-ITTTHGFQKPRHSAPVLERGEWAATFDFL-GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 227 ---g-------~~-l~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
| .| +++.+ ..+..+.+|........+... -....|..++|+|+|
T Consensus 282 ~~ng~~~~~~~~y~i~Avg---SqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG--------------------- 337 (942)
T KOG0973|consen 282 NKNGTSTQPNCYYCIAAVG---SQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG--------------------- 337 (942)
T ss_pred cccCCccCCCcceEEEEEe---cCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC---------------------
Confidence 1 11 33332 345677888876655543321 236789999999998
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
..|+.++.||+|.++.++..+.
T Consensus 338 ------------~~LfacS~DGtV~~i~Fee~El 359 (942)
T KOG0973|consen 338 ------------FSLFACSLDGTVALIHFEEKEL 359 (942)
T ss_pred ------------CeEEEEecCCeEEEEEcchHHh
Confidence 6788999999999999876543
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.2e-26 Score=217.78 Aligned_cols=276 Identities=21% Similarity=0.299 Sum_probs=216.8
Q ss_pred EEEEEeCCCeEEEEeCCcCCC-CCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 27 RFATGGGDHKVRIWNMKSVGK-NFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
.|++|++...|.=+++..... ...........+..+..|.+.|++++.+ +.|+|+|+.|-+|+|||+...
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~------- 73 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKR------- 73 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccch-------
Confidence 577888887777777665321 1111122334577788999999999996 889999999999999999987
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS--ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIA 183 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 183 (689)
.....+-.|.+.|+++.|.++-. .|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+++.+
T Consensus 74 ----------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLAL 143 (362)
T KOG0294|consen 74 ----------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLAL 143 (362)
T ss_pred ----------hhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEE
Confidence 56677778999999999998865 999999999999999999999999999999999999999999999
Q ss_pred EEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCC
Q 040062 184 SQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAP 263 (689)
Q Consensus 184 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~ 263 (689)
+.+.|+.++.||+-+++.......... ...+.|+|.|.+++.... ..+.+|....-... ........
T Consensus 144 sVg~D~~lr~WNLV~Gr~a~v~~L~~~-------at~v~w~~~Gd~F~v~~~-----~~i~i~q~d~A~v~-~~i~~~~r 210 (362)
T KOG0294|consen 144 SVGGDQVLRTWNLVRGRVAFVLNLKNK-------ATLVSWSPQGDHFVVSGR-----NKIDIYQLDNASVF-REIENPKR 210 (362)
T ss_pred EEcCCceeeeehhhcCccceeeccCCc-------ceeeEEcCCCCEEEEEec-----cEEEEEecccHhHh-hhhhcccc
Confidence 999999999999988876665544322 345899999998887654 33334443322111 11111234
Q ss_pred EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEE
Q 040062 264 IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDL 343 (689)
Q Consensus 264 v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 343 (689)
+.++.|-. +..|++|+.|+.|.+||..+..++..+. .|...|.++
T Consensus 211 ~l~~~~l~----------------------------------~~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i 255 (362)
T KOG0294|consen 211 ILCATFLD----------------------------------GSELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDI 255 (362)
T ss_pred ceeeeecC----------------------------------CceEEEecCCceEEEeccCCCccceeee-cchhheeee
Confidence 55555543 3699999999999999999988877765 689999998
Q ss_pred EE--ccCCCeEEEEeCCCcEEEEEeecc
Q 040062 344 SW--SPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 344 ~~--spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
.+ .|++.+|+++|.||.|+|||++..
T Consensus 256 ~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecCCceEEEEeccCceEEEEEcccc
Confidence 84 467899999999999999999865
No 70
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.4e-27 Score=236.90 Aligned_cols=281 Identities=21% Similarity=0.345 Sum_probs=234.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|.| .|..+.|-++...|++|+.|..|++|+... .....+.++.+..+.|+.+.|.++++++++++.|+.
T Consensus 173 ~h~g-ev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~---------~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~ 242 (459)
T KOG0288|consen 173 AHEG-EVHDVEFLRNSDTLATGGSDRIIKLWNVLG---------EKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKN 242 (459)
T ss_pred cccc-ccceeEEccCcchhhhcchhhhhhhhhccc---------chhhhhhhhhccCCCcceeeecCCCceEEeecCCCc
Confidence 4774 899999999999999999999999999875 124577888889999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
+++|+++.. +...+|.+|+..|+++.|......+++|+.|.+|++||+....+..++- ..+.
T Consensus 243 ~r~Wnvd~~-----------------r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~ 304 (459)
T KOG0288|consen 243 LRLWNVDSL-----------------RLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQ 304 (459)
T ss_pred eeeeeccch-----------------hhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheecccc-cccc
Confidence 999999887 6788899999999999999877779999999999999999988887765 3455
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
+..|+.+ ...++++..|++|++||.++..+...+.... .+.++..+++|..++++..++ .+.+++..
T Consensus 305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-------~vtSl~ls~~g~~lLsssRDd----tl~viDlR 371 (459)
T KOG0288|consen 305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-------RVTSLDLSMDGLELLSSSRDD----TLKVIDLR 371 (459)
T ss_pred ccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-------ceeeEeeccCCeEEeeecCCC----ceeeeecc
Confidence 6666665 5678899999999999999998888876554 389999999999999986643 34455555
Q ss_pred CceeeeeecCC----CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 250 EWAATFDFLGH----NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 250 ~~~~~~~l~~h----~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
.......+... ....+.+.|+|++ .|+++|+.||.|+||++.+
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfSpd~---------------------------------~YvaAGS~dgsv~iW~v~t 418 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFSPDG---------------------------------SYVAAGSADGSVYIWSVFT 418 (459)
T ss_pred cccEEEEeeccccccccccceeEECCCC---------------------------------ceeeeccCCCcEEEEEccC
Confidence 44433332211 1225555666554 9999999999999999999
Q ss_pred CCceEEecccCCC-CeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 326 PRPLFVAKHFFTQ-SVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 326 ~~~~~~~~~~h~~-~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
+++...+...+.. .|++++|+|.|..|++++.++.+.+|
T Consensus 419 gKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 419 GKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 9999888876655 79999999999999999999999999
No 71
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.1e-26 Score=217.07 Aligned_cols=284 Identities=20% Similarity=0.324 Sum_probs=228.7
Q ss_pred EEEEEEcCC-CCEEEEEe-------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeC
Q 040062 16 IFSIDVQPG-ALRFATGG-------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSD 86 (689)
Q Consensus 16 I~si~~spd-g~~Latgs-------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~ 86 (689)
=+++.|||- .++||++. ..|++.|-++.. ...-.....+. -...+..|+|++ ..+.+++++.
T Consensus 11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~--------~~gi~e~~s~d-~~D~LfdV~Wse~~e~~~~~a~G 81 (311)
T KOG0277|consen 11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTD--------PKGIQECQSYD-TEDGLFDVAWSENHENQVIAASG 81 (311)
T ss_pred cceeEecccccchhheeehhhcccccCceEEEEecCC--------CCCeEEEEeee-cccceeEeeecCCCcceEEEEec
Confidence 389999993 34555542 468999999863 11123334443 567899999998 4568899999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
||+++|||+.... ..+..++.|...|.++.|++- +..+++++.|++|++|+...+..+.++.+
T Consensus 82 DGSLrl~d~~~~s----------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g 145 (311)
T KOG0277|consen 82 DGSLRLFDLTMPS----------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG 145 (311)
T ss_pred CceEEEeccCCCC----------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecC
Confidence 9999999965432 477888899999999999985 45788889999999999999999999999
Q ss_pred CCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 166 HSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 166 h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
|.+.|....|+| ..+.+++++.|+++++||++.......+..|.. .+.++.|+.-...++++++. ...++
T Consensus 146 h~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~------Eil~cdw~ky~~~vl~Tg~v---d~~vr 216 (311)
T KOG0277|consen 146 HNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS------EILCCDWSKYNHNVLATGGV---DNLVR 216 (311)
T ss_pred CccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc------eeEeecccccCCcEEEecCC---CceEE
Confidence 999999999999 568999999999999999987555445665543 38999999877776666553 45667
Q ss_pred eeecCCce-eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 245 VLERGEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 245 i~~~~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.|+.+... ..+.+.+|.-.|..+.|+|.. ..+|++++.|-+++|||.
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~--------------------------------~~lLaSasYDmT~riw~~ 264 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHH--------------------------------ASLLASASYDMTVRIWDP 264 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcch--------------------------------hhHhhhccccceEEeccc
Confidence 77765543 466788999999999999984 378999999999999999
Q ss_pred CCCCceEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEEEE
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVANFH 365 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~vwd 365 (689)
..+.........|.+-+..+.||+ ++.+++++++|+.++||+
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN 307 (311)
T ss_pred ccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence 877666555567899999999998 577899999999999998
No 72
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=5.2e-26 Score=248.51 Aligned_cols=283 Identities=24% Similarity=0.374 Sum_probs=248.6
Q ss_pred ecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee-ecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT-LRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 11 H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
|+...|.|..|+ ..++++++.|.+|++||... ...+.. +.+|.+.|.+++|...+.+|++|+.|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~-----------~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN-----------GYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeeccc-----------ceEEEeeccCCCCCceeEEEecCCCEEEEEecCCc
Confidence 444678899998 55899999999999999987 666666 9999999999999987889999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
+++||..++ .+...+.+|...|.++... ..++++|+.|.+|++|++.++.++..+.+|...
T Consensus 273 ~rvWd~~sg-----------------~C~~~l~gh~stv~~~~~~--~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~ 333 (537)
T KOG0274|consen 273 ERVWDCSTG-----------------ECTHSLQGHTSSVRCLTID--PFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGP 333 (537)
T ss_pred EEeEecCCC-----------------cEEEEecCCCceEEEEEcc--CceEeeccCCceEEEEeccCcceEEEecccccc
Confidence 999999998 7999999999999999875 567888999999999999999999999999999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
|.++..+ +.++++|+.|++|++||..+++++..+.+|... |.++.+... .+++.++- ...+.+|+..
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~------V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~ 400 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGR------VYSLIVDSE-NRLLSGSL----DTTIKVWDLR 400 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcce------EEEEEecCc-ceEEeeee----ccceEeecCC
Confidence 9999988 889999999999999999999999999998655 888877766 66666654 3678899998
Q ss_pred Cc-eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 250 EW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 250 ~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
.. .+...+.+|..-+..+.+. +++|++++.|+.|++||..++++
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~~-----------------------------------~~~Lvs~~aD~~Ik~WD~~~~~~ 445 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLLR-----------------------------------DNFLVSSSADGTIKLWDAEEGEC 445 (537)
T ss_pred chhhhhhhhcCCcccccccccc-----------------------------------cceeEeccccccEEEeecccCce
Confidence 88 8999999999888666553 36899999999999999999999
Q ss_pred eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 329 LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
+..+...|...|..+++. ...+++++.||++++||++++++...+
T Consensus 446 ~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 446 LRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred eeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhh
Confidence 999887667889999886 467889999999999999998876543
No 73
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2e-26 Score=238.64 Aligned_cols=223 Identities=18% Similarity=0.298 Sum_probs=206.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
-||.++.|-..-+++++|+.|..|+||+..+ .+.++.|..|...|.|++.+|.-.+++++|+|-+|++|
T Consensus 56 ~PvRa~kfiaRknWiv~GsDD~~IrVfnynt-----------~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW 124 (794)
T KOG0276|consen 56 VPVRAAKFIARKNWIVTGSDDMQIRVFNYNT-----------GEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLW 124 (794)
T ss_pred cchhhheeeeccceEEEecCCceEEEEeccc-----------ceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEe
Confidence 4888999999999999999999999999998 89999999999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
|.+.. |.+.+++.+|+.-|.+++|+|. .+.+|+++.|++|+||.+.+..+..++.+|...|.|
T Consensus 125 ~we~~----------------wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~ 188 (794)
T KOG0276|consen 125 DWENE----------------WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNC 188 (794)
T ss_pred eccCc----------------eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcce
Confidence 99864 7999999999999999999995 569999999999999999999999999999999999
Q ss_pred EEEccCC--CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 173 VAWDPIG--SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 173 l~~spdg--~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
+.|-+-| .+|++|++|.+|+|||..+..+++++++|..+ +..++|+|.=..|++++. ...+++|+..+
T Consensus 189 Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~N------vs~v~fhp~lpiiisgsE----DGTvriWhs~T 258 (794)
T KOG0276|consen 189 VDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNN------VSFVFFHPELPIIISGSE----DGTVRIWNSKT 258 (794)
T ss_pred EEeccCCCcceEEecCCCceEEEeecchHHHHHHhhccccc------ceEEEecCCCcEEEEecC----CccEEEecCcc
Confidence 9998854 59999999999999999999999999999777 899999999999999876 56788999999
Q ss_pred ceeeeeecCCCCCEEEEEEcCCc
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSM 273 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~ 273 (689)
+.....+.-.-+.+.+++..+..
T Consensus 259 y~lE~tLn~gleRvW~I~~~k~~ 281 (794)
T KOG0276|consen 259 YKLEKTLNYGLERVWCIAAHKGD 281 (794)
T ss_pred eehhhhhhcCCceEEEEeecCCC
Confidence 88887777778899999987764
No 74
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.8e-26 Score=227.79 Aligned_cols=282 Identities=21% Similarity=0.288 Sum_probs=240.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|+++...|....++||+.|..+.++|... .+.+.++.+|...|+.+.|+|+...+++++.|..|+||.
T Consensus 221 gi~ald~~~s~~~ilTGG~d~~av~~d~~s-----------~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 221 GITALDIIPSSSKILTGGEDKTAVLFDKPS-----------NQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred CeeEEeecCCCCcceecCCCCceEEEecch-----------hhhhhhccCcceEEEEEEeccchhheeecCCcceEEeec
Confidence 599999999888999999999999999987 789999999999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC--CCCeEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH--SSLVKG 172 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h--~~~V~~ 172 (689)
.... ......+.|...|+.+..+|.|.||++++.|++..+.|++++..+...... .-.+++
T Consensus 290 ~~~~-----------------s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts 352 (506)
T KOG0289|consen 290 VPLS-----------------SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTS 352 (506)
T ss_pred cccc-----------------cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEE
Confidence 8765 345566789999999999999999999999999999999999998877642 245899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
.+|||||..|.+|..|+.|+|||+.+.....
T Consensus 353 ~~fHpDgLifgtgt~d~~vkiwdlks~~~~a------------------------------------------------- 383 (506)
T KOG0289|consen 353 AAFHPDGLIFGTGTPDGVVKIWDLKSQTNVA------------------------------------------------- 383 (506)
T ss_pred eeEcCCceEEeccCCCceEEEEEcCCccccc-------------------------------------------------
Confidence 9999999999999999999999997643221
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
.|.+|.++|..++|+.+| .+|++++.|+.|++||++..+.+..+
T Consensus 384 ---~Fpght~~vk~i~FsENG---------------------------------Y~Lat~add~~V~lwDLRKl~n~kt~ 427 (506)
T KOG0289|consen 384 ---KFPGHTGPVKAISFSENG---------------------------------YWLATAADDGSVKLWDLRKLKNFKTI 427 (506)
T ss_pred ---cCCCCCCceeEEEeccCc---------------------------------eEEEEEecCCeEEEEEehhhccccee
Confidence 367799999999999887 69999999999999999998877777
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcc
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASA 412 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~ 412 (689)
.......+.+++|.+.|.+|+.++.|=.|++++-.+++.... ..+..|.+..+.+.|....++|+++|.
T Consensus 428 ~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~-----------~~~~~~sg~st~v~Fg~~aq~l~s~sm 496 (506)
T KOG0289|consen 428 QLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEI-----------KELADHSGLSTGVRFGEHAQYLASTSM 496 (506)
T ss_pred eccccccceeEEEcCCCCeEEeecceeEEEEEecccccceee-----------ehhhhcccccceeeecccceEEeeccc
Confidence 665556799999999999999998776666665444333211 223346667899999999999999999
Q ss_pred ccceeeeeee
Q 040062 413 KETTTKKVVS 422 (689)
Q Consensus 413 DG~v~~~~~~ 422 (689)
|..+ +++.
T Consensus 497 d~~l--~~~a 504 (506)
T KOG0289|consen 497 DAIL--RLYA 504 (506)
T ss_pred hhhe--EEee
Confidence 9987 5443
No 75
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.2e-26 Score=242.34 Aligned_cols=274 Identities=26% Similarity=0.383 Sum_probs=227.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
..-++|+ ..+.||+|.. ..|++|+..+ +........+...|+++.|+++|.+|+.|..+|.|.|||.
T Consensus 180 ~nlldWs-s~n~laValg-~~vylW~~~s-----------~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 180 LNLLDWS-SANVLAVALG-QSVYLWSASS-----------GSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDV 246 (484)
T ss_pred hhHhhcc-cCCeEEEEec-ceEEEEecCC-----------CceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence 3446777 4557787765 5799999886 3333333334889999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE-EecCCCCeEEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV-LRGHSSLVKGV 173 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~-l~~h~~~V~~l 173 (689)
... +.+..+.+ |...|-+++|+ +..+.+|+.|+.|.++|++..+.... +.+|...|.++
T Consensus 247 ~~~-----------------k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgL 307 (484)
T KOG0305|consen 247 KEQ-----------------KKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGL 307 (484)
T ss_pred hhc-----------------cccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeee
Confidence 877 56666777 99999999998 77899999999999999998776655 88999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
.|++|+++||+|+.|+.+.|||.......
T Consensus 308 kws~d~~~lASGgnDN~~~Iwd~~~~~p~--------------------------------------------------- 336 (484)
T KOG0305|consen 308 KWSPDGNQLASGGNDNVVFIWDGLSPEPK--------------------------------------------------- 336 (484)
T ss_pred EECCCCCeeccCCCccceEeccCCCcccc---------------------------------------------------
Confidence 99999999999999999999998432222
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe--CCCcEEEEeCCCCCceEE
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS--QDRTITVWTTASPRPLFV 331 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs--~Dg~I~iwd~~~~~~~~~ 331 (689)
+.+..|.+.|..++|+|-. ..+||+|+ .|++|++||+.++..+..
T Consensus 337 -~~~~~H~aAVKA~awcP~q--------------------------------~~lLAsGGGs~D~~i~fwn~~~g~~i~~ 383 (484)
T KOG0305|consen 337 -FTFTEHTAAVKALAWCPWQ--------------------------------SGLLATGGGSADRCIKFWNTNTGARIDS 383 (484)
T ss_pred -EEEeccceeeeEeeeCCCc--------------------------------cCceEEcCCCcccEEEEEEcCCCcEecc
Confidence 2345688999999999874 36888875 589999999999999887
Q ss_pred ecccCCCCeEEEEEccCCCeEEE--EeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHh
Q 040062 332 AKHFFTQSVVDLSWSPDGYSLFA--CSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEA 409 (689)
Q Consensus 332 ~~~~h~~~V~~l~~spdg~~L~s--gs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las 409 (689)
+.. ...|..|.|++..+-|++ |..++.|.||++.+.+.. ....+|..+|..+++||||..+++
T Consensus 384 vdt--gsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-------------~~l~gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 384 VDT--GSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-------------AELLGHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred ccc--CCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-------------eeecCCcceeEEEEECCCCCEEEE
Confidence 765 678999999999877766 556789999999885554 334468889999999999999999
Q ss_pred hccccceeeeeee
Q 040062 410 ASAKETTTKKVVS 422 (689)
Q Consensus 410 ~s~DG~v~~~~~~ 422 (689)
|+.|.++ +.+.
T Consensus 449 ~a~DETl--rfw~ 459 (484)
T KOG0305|consen 449 GAADETL--RFWN 459 (484)
T ss_pred ecccCcE--Eecc
Confidence 9999999 6664
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=4.1e-26 Score=240.32 Aligned_cols=243 Identities=28% Similarity=0.496 Sum_probs=217.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..|+++.|+++|.+||+|..+|.|.|||.+. .+.+..+.+ |...|-+++|+ +..+.+|+.|+.|..
T Consensus 218 ~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~-----------~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~ 284 (484)
T KOG0305|consen 218 ELVTSVKWSPDGSHLAVGTSDGTVQIWDVKE-----------QKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILN 284 (484)
T ss_pred CceEEEEECCCCCEEEEeecCCeEEEEehhh-----------ccccccccCCcCceeEEEecc--CceEEEecCCCcEEE
Confidence 6899999999999999999999999999987 778888888 99999999998 678999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
+|++.... ....+.+|...|..+.|++|+.+||+|+.|+.+.|||....+....+..|...|.+
T Consensus 285 ~dvR~~~~----------------~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA 348 (484)
T KOG0305|consen 285 HDVRISQH----------------VVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKA 348 (484)
T ss_pred EEEecchh----------------hhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeE
Confidence 99987631 22248889999999999999999999999999999999888999999999999999
Q ss_pred EEEcc-CCCEEEEEe--CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 173 VAWDP-IGSFIASQS--DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 173 l~~sp-dg~~las~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
++|+| ...+||+|+ .|+.|++||..++..+..+... ..|..+.|++..+.|++++++.. ..+.+|.-.
T Consensus 349 ~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtg-------sQVcsL~Wsk~~kEi~sthG~s~--n~i~lw~~p 419 (484)
T KOG0305|consen 349 LAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTG-------SQVCSLIWSKKYKELLSTHGYSE--NQITLWKYP 419 (484)
T ss_pred eeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccC-------CceeeEEEcCCCCEEEEecCCCC--CcEEEEecc
Confidence 99999 557888865 6999999999999888877643 34999999999999999887654 377888888
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
.......+.+|...|..++++|++ ..+++|+.|.++++|++-...
T Consensus 420 s~~~~~~l~gH~~RVl~la~SPdg---------------------------------~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 420 SMKLVAELLGHTSRVLYLALSPDG---------------------------------ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ccceeeeecCCcceeEEEEECCCC---------------------------------CEEEEecccCcEEeccccCCC
Confidence 889999999999999999999997 899999999999999987653
No 77
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=1.9e-26 Score=248.38 Aligned_cols=268 Identities=21% Similarity=0.317 Sum_probs=202.9
Q ss_pred eeeeeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCc----cc----------------cCCC--------
Q 040062 57 RLLATLR-DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGT----TE----------------FGSG-------- 107 (689)
Q Consensus 57 ~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~----~~----------------~~~~-------- 107 (689)
...+.+. .|.+.|.++.||+||+|||+|+.|+.|+||.+...... .. ....
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 3344455 89999999999999999999999999999998761000 00 0000
Q ss_pred -------CCC--------CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 108 -------EPP--------DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 108 -------~~~--------~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
+.+ ..-.-+.+..+.+|..+|.+|.||. +.+|++++.|.+|++|++...++++.|. |...|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 000 0011145677889999999999995 5589999999999999999999999999 9999999
Q ss_pred EEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 173 VAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 173 l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
|+|+| |.+||++|+-|+.||||++...+...-..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--------------------------------------------- 449 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--------------------------------------------- 449 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEeehh---------------------------------------------
Confidence 99999 77999999999999999986544332211
Q ss_pred eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE
Q 040062 252 AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV 331 (689)
Q Consensus 252 ~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~ 331 (689)
-..-|++++|.|+| ++.++|+.+|.+++|++...+....
T Consensus 450 --------l~~lITAvcy~PdG---------------------------------k~avIGt~~G~C~fY~t~~lk~~~~ 488 (712)
T KOG0283|consen 450 --------LRDLITAVCYSPDG---------------------------------KGAVIGTFNGYCRFYDTEGLKLVSD 488 (712)
T ss_pred --------hhhhheeEEeccCC---------------------------------ceEEEEEeccEEEEEEccCCeEEEe
Confidence 12457888888886 7889999999999999887665543
Q ss_pred eccc-------CCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 332 AKHF-------FTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 332 ~~~~-------h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
..-. ....|+.+.|.|.. ..|++.+.|..|+|||.+..++...+.+. . ....-....|+.|
T Consensus 489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~----------~-n~~SQ~~Asfs~D 557 (712)
T KOG0283|consen 489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGF----------R-NTSSQISASFSSD 557 (712)
T ss_pred eeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccc----------c-cCCcceeeeEccC
Confidence 3211 12269999999743 35888889999999999887776544321 1 1113466789999
Q ss_pred hhhhHhhccccceeeeeeeccc
Q 040062 404 QLLLEAASAKETTTKKVVSDVQ 425 (689)
Q Consensus 404 g~~Las~s~DG~v~~~~~~~~~ 425 (689)
|++|+++++|..| +++....
T Consensus 558 gk~IVs~seDs~V--YiW~~~~ 577 (712)
T KOG0283|consen 558 GKHIVSASEDSWV--YIWKNDS 577 (712)
T ss_pred CCEEEEeecCceE--EEEeCCC
Confidence 9999999999999 8887543
No 78
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=4.1e-26 Score=218.80 Aligned_cols=303 Identities=23% Similarity=0.342 Sum_probs=246.3
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..+.+|. +.|+.++.......+.+++.|.+-+||.+++ +.++.++.+|.+.|+++.|++.+.++++++
T Consensus 142 re~~GHk-DGiW~Vaa~~tqpi~gtASADhTA~iWs~Es-----------g~CL~~Y~GH~GSVNsikfh~s~~L~lTaS 209 (481)
T KOG0300|consen 142 RELEGHK-DGIWHVAADSTQPICGTASADHTARIWSLES-----------GACLATYTGHTGSVNSIKFHNSGLLLLTAS 209 (481)
T ss_pred hhhcccc-cceeeehhhcCCcceeecccccceeEEeecc-----------ccceeeecccccceeeEEeccccceEEEcc
Confidence 4567888 6899999998888999999999999999998 999999999999999999999999999999
Q ss_pred CCCeEEEEEcC------CCCCccccCCCC--------CC--------Cc-ccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 86 DDQVILIHEKK------PGSGTTEFGSGE--------PP--------DI-ENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 86 ~Dg~I~iwdl~------~~~~~~~~~~~~--------~~--------~~-~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
.|++..||... .+.......+.+ .. +. ..-..+..+.+|...|.+..|...++.+++
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 99999999832 111000000000 00 00 011356788999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
++.|.+..+||+++++.+..+.+|....+.++-+|..+++++.+.|-+.++||++. .++ +
T Consensus 290 aSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~----------------s-- 349 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQ----------------S-- 349 (481)
T ss_pred eeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcc----------------e--
Confidence 99999999999999999999999999999999999999999999999999999863 111 1
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
...|.||...|+++.|+.+
T Consensus 350 -------------------------------V~VFQGHtdtVTS~vF~~d------------------------------ 368 (481)
T KOG0300|consen 350 -------------------------------VAVFQGHTDTVTSVVFNTD------------------------------ 368 (481)
T ss_pred -------------------------------eeeecccccceeEEEEecC------------------------------
Confidence 1136789999999999877
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCC-ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPR-PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
..+++|+.|.+|++||+++.+ ++..+.. ..+++.++.+..+..++.--++..|++||++...+.. ++.
T Consensus 369 ----d~vVSgSDDrTvKvWdLrNMRsplATIRt--dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaR-lPr---- 437 (481)
T KOG0300|consen 369 ----DRVVSGSDDRTVKVWDLRNMRSPLATIRT--DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLAR-LPR---- 437 (481)
T ss_pred ----CceeecCCCceEEEeeeccccCcceeeec--CCccceeEeecCCceEEeccCCceEEEEecCCCcccc-CCc----
Confidence 579999999999999999875 5555554 6789999999988899998889999999998766542 221
Q ss_pred HHHHhccCCccCceeeeecCchh--hhhHhhccccce
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQ--LLLEAASAKETT 416 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg--~~Las~s~DG~v 416 (689)
..-..|+..|++++|..+. .-|.+++-|..+
T Consensus 438 ----tsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v 470 (481)
T KOG0300|consen 438 ----TSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV 470 (481)
T ss_pred ----ccccccceeeeeeeccccCccccccccccccee
Confidence 2334588889999998654 457778888777
No 79
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=8.9e-25 Score=239.61 Aligned_cols=264 Identities=16% Similarity=0.196 Sum_probs=196.2
Q ss_pred EeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCC
Q 040062 31 GGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEP 109 (689)
Q Consensus 31 gs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~ 109 (689)
|+.++.|++|+... ...+..+.+|.+.|.+++|+|+ +.+|++|+.|+.|+|||+.++.....
T Consensus 50 GG~~gvI~L~~~~r-----------~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~------ 112 (568)
T PTZ00420 50 GGLIGAIRLENQMR-----------KPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK------ 112 (568)
T ss_pred CCceeEEEeeecCC-----------CceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc------
Confidence 45578899998765 4567889999999999999996 78999999999999999976421000
Q ss_pred CCcccceEEEEEecCCCCEEEEEEcCCCCE-EEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC
Q 040062 110 PDIENWKVAMTLRGHTADVVDLNWSPDDSI-LASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD 188 (689)
Q Consensus 110 ~~~~~~~~~~~l~~h~~~V~~l~~spdg~~-Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D 188 (689)
........+.+|...|.+++|+|++.. |++++.|+.|+|||+++++.+..+. |...|.+++|+|+|.+|++++.|
T Consensus 113 ---~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D 188 (568)
T PTZ00420 113 ---EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVG 188 (568)
T ss_pred ---ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecC
Confidence 001244567899999999999999875 5789999999999999998887776 67889999999999999999999
Q ss_pred CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeee---ecCCCCCEE
Q 040062 189 KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFD---FLGHNAPII 265 (689)
Q Consensus 189 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~h~~~v~ 265 (689)
+.|+|||+++++.+..+..|.... ....+....|++++.+|++++.+......+.+|+......... +..+.+.+.
T Consensus 189 ~~IrIwD~Rsg~~i~tl~gH~g~~-~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~ 267 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFHIHDGGK-NTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLI 267 (568)
T ss_pred CEEEEEECCCCcEEEEEecccCCc-eeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceE
Confidence 999999999999888877664321 1122334457799999998876554445688998765332222 222222222
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
.....+ .+.++++|+.|+.|++|++..+.....-...+..++..++|
T Consensus 268 p~~D~~---------------------------------tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f 314 (568)
T PTZ00420 268 PHYDES---------------------------------TGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGF 314 (568)
T ss_pred EeeeCC---------------------------------CCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEE
Confidence 222222 34789999999999999998764333222234567889999
Q ss_pred ccCC
Q 040062 346 SPDG 349 (689)
Q Consensus 346 spdg 349 (689)
.|..
T Consensus 315 ~Pkr 318 (568)
T PTZ00420 315 LPKQ 318 (568)
T ss_pred cccc
Confidence 9963
No 80
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=2.4e-26 Score=213.65 Aligned_cols=255 Identities=29% Similarity=0.431 Sum_probs=208.1
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEeCC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGSDD 87 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~D 87 (689)
.|. +-|..+...-.|++|||++.|++|+||...... ..+++.+|.+|.++|..++|.. -|.+||+|+.|
T Consensus 9 ~H~-D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~--------~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 9 QHE-DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNG--------QSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhh-hhhhHhhhhhhcceeeeecCCccEEEEEEcCCC--------CceeeeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 577 688888888999999999999999999998621 1378999999999999999986 79999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCC---eEEEE
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTG---ICTAV 162 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~---~~~~~ 162 (689)
|.|.||.-..+ .|........|...|++++|.|. |-.|++++.||.|.|++.+.. ...+.
T Consensus 80 gkVIiWke~~g---------------~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki 144 (299)
T KOG1332|consen 80 GKVIIWKEENG---------------RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI 144 (299)
T ss_pred ceEEEEecCCC---------------chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh
Confidence 99999987765 46777888899999999999997 458999999999999988764 23344
Q ss_pred EecCCCCeEEEEEccC---C-----------CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC
Q 040062 163 LRGHSSLVKGVAWDPI---G-----------SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 163 l~~h~~~V~~l~~spd---g-----------~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 228 (689)
...|.-.|++++|.|. | +.|++|+.|..|+||+..+++
T Consensus 145 ~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~---------------------------- 196 (299)
T KOG1332|consen 145 VFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS---------------------------- 196 (299)
T ss_pred hhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc----------------------------
Confidence 5679999999999985 4 569999999999999986541
Q ss_pred eEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcE
Q 040062 229 FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNV 308 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 308 (689)
|.....|.+|.+.|..++|.|.. .....+
T Consensus 197 ----------------------w~~e~~l~~H~dwVRDVAwaP~~-----------------------------gl~~s~ 225 (299)
T KOG1332|consen 197 ----------------------WKLERTLEGHKDWVRDVAWAPSV-----------------------------GLPKST 225 (299)
T ss_pred ----------------------hhhhhhhhhcchhhhhhhhcccc-----------------------------CCCcee
Confidence 11222366789999999999874 113378
Q ss_pred EEEEeCCCcEEEEeCCCCC--ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 309 IAIGSQDRTITVWTTASPR--PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 309 lasgs~Dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
||++++||++.||..+... -..++...+...+..++||..|..|++++.|+.|.+|.-+
T Consensus 226 iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 226 IASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred eEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 9999999999999876321 1122333356789999999999999999999999999743
No 81
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-24 Score=210.36 Aligned_cols=282 Identities=17% Similarity=0.220 Sum_probs=229.5
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
+..+.+....+.|+++.|+++|.+|++++.|.+++|||..++ +++.++..+...|..++|...
T Consensus 5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g-----------------~~~~ti~skkyG~~~~~Fth~ 67 (311)
T KOG1446|consen 5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSG-----------------KQVKTINSKKYGVDLACFTHH 67 (311)
T ss_pred ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCC-----------------ceeeEeecccccccEEEEecC
Confidence 444556667788999999999999999999999999999988 788888888899999999888
Q ss_pred CCEEEEEeC--CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 137 DSILASGSL--DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 137 g~~Lasgs~--Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
...++.++. |.+|+..++.+.+.++.+.+|...|..|+.+|-+..+++++.|++|++||++..++...+.....
T Consensus 68 ~~~~i~sStk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~---- 143 (311)
T KOG1446|consen 68 SNTVIHSSTKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR---- 143 (311)
T ss_pred CceEEEccCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----
Confidence 777777775 88999999999999999999999999999999999999999999999999997776655543322
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce----eeeeec-CCCCCEEEEEEcCCccccccccccccccccc
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA----ATFDFL-GHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~l~-~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
..++|+|+|-+++++.+.+ .+.+++.+... ..+.+. ........+.|+|+|
T Consensus 144 ----pi~AfDp~GLifA~~~~~~----~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dG---------------- 199 (311)
T KOG1446|consen 144 ----PIAAFDPEGLIFALANGSE----LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDG---------------- 199 (311)
T ss_pred ----cceeECCCCcEEEEecCCC----eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCC----------------
Confidence 3578999999999987633 55666665442 122222 345667788888876
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC--CeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ--SVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++|+.+...+.+++.|.-+|..+..+...-.. --.+.+|+||++++++|+.||+|.+|+++
T Consensus 200 -----------------K~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~ 262 (311)
T KOG1446|consen 200 -----------------KSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLE 262 (311)
T ss_pred -----------------CEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcC
Confidence 89999999999999999999877766542221 23578899999999999999999999999
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcc
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASA 412 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~ 412 (689)
++.....+. +.+.+.+.++.|+|.-.++++++.
T Consensus 263 tg~~v~~~~------------~~~~~~~~~~~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 263 TGKKVAVLR------------GPNGGPVSCVRFNPRYAMFVSASS 295 (311)
T ss_pred CCcEeeEec------------CCCCCCccccccCCceeeeeecCc
Confidence 887765433 225567899999999988888764
No 82
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.94 E-value=6.8e-26 Score=229.08 Aligned_cols=291 Identities=17% Similarity=0.286 Sum_probs=239.2
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--CCCCcEEEEEEcCCCCEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--DHFGSVNCVRWAKHGRYI 81 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fspdg~~L 81 (689)
.+...+.|. .-|.++.+|...+++.||+. |.|+|||+..... ...+..+. .....|.++.++|||+.|
T Consensus 411 rq~~tL~HG-EvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~--------k~PvsqLdcl~rdnyiRSckL~pdgrtL 480 (705)
T KOG0639|consen 411 RQINTLAHG-EVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN--------KSPVSQLDCLNRDNYIRSCKLLPDGRTL 480 (705)
T ss_pred HhhhhhccC-cEEEEEEecCCcceeEecCC-CeEEEeeccCCCC--------CCccccccccCcccceeeeEecCCCceE
Confidence 344567787 69999999999999999987 8899999986322 12222222 244678999999999999
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
++|+.-.++.|||+..... +....+......+.+|+.+||.+..+++..||.|.|||+.+...++
T Consensus 481 ivGGeastlsiWDLAapTp---------------rikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~Vr 545 (705)
T KOG0639|consen 481 IVGGEASTLSIWDLAAPTP---------------RIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVR 545 (705)
T ss_pred EeccccceeeeeeccCCCc---------------chhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeee
Confidence 9999999999999987632 2333444445678899999999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
.|.+|.+.+.||.+++||..|.||+-|.+||.||++++..+..... ...|.++.++|.+.+++++-...
T Consensus 546 qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF-------~SQIfSLg~cP~~dWlavGMens---- 614 (705)
T KOG0639|consen 546 QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF-------SSQIFSLGYCPTGDWLAVGMENS---- 614 (705)
T ss_pred cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh-------hhhheecccCCCccceeeecccC----
Confidence 9999999999999999999999999999999999999877665443 23388999999999999975422
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.+.+.. .+....+.+..|+.-|.++.|.+.+ +++++.+.|+.+..|
T Consensus 615 ~vevlh-~skp~kyqlhlheScVLSlKFa~cG---------------------------------kwfvStGkDnlLnaw 660 (705)
T KOG0639|consen 615 NVEVLH-TSKPEKYQLHLHESCVLSLKFAYCG---------------------------------KWFVSTGKDNLLNAW 660 (705)
T ss_pred cEEEEe-cCCccceeecccccEEEEEEecccC---------------------------------ceeeecCchhhhhhc
Confidence 222222 2233445677799999999999987 899999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+--+..++..+. ..+|.++.+|.|.+|+++|+.|..-.||.+
T Consensus 661 rtPyGasiFqskE--~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 661 RTPYGASIFQSKE--SSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCccccceeeccc--cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 9999988887665 788999999999999999999999988875
No 83
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=5.8e-25 Score=230.40 Aligned_cols=343 Identities=15% Similarity=0.181 Sum_probs=254.4
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-----------CCEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-----------GRYIASG 84 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-----------g~~Lasg 84 (689)
..+|.|++....|.+--.|..++|||+.+..+ ......+-.|...|+.|.--|. ...|++|
T Consensus 327 ~IA~~Fdet~~klscVYndhSlYvWDvrD~~k--------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 327 AIACQFDETTDKLSCVYNDHSLYVWDVRDVNK--------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred eeEEEecCCCceEEEEEcCceEEEEecccccc--------ccceeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 45788999999999999999999999987332 3334455569999998887661 1368999
Q ss_pred eCCCeEEEEEcCCCCCccccCCC----C----CC-C----------cccc-eEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSG----E----PP-D----------IENW-KVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~----~----~~-~----------~~~~-~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
+.|++|++|+++.......+..+ + +. + ..-+ +...........+.+++.+|++++||+|.
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD 478 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD 478 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence 99999999999873211111000 0 00 0 0000 11112223446799999999999999999
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEE
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP---IGSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
.-|+|+|||+..-+....+..|.+.|.|+.|+- ..++|++++.|+-|+|||+. +..+.+++..|... |++
T Consensus 479 r~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSss------ITs 552 (1080)
T KOG1408|consen 479 RGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSS------ITS 552 (1080)
T ss_pred ccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccc------eeE
Confidence 999999999999999999999999999999985 35789999999999999985 56667777766444 899
Q ss_pred EEEcCCC--CeEEEecCCCCCccccceeecCCceeeeeecCC-----CCCEEEEEEcCCccccccccccccccccccccC
Q 040062 221 LGWSPCG--HFITTTHGFQKPRHSAPVLERGEWAATFDFLGH-----NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 221 l~~spdg--~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h-----~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
+.|.-.| ..+++++.+...... .. ....... .|..| ...++.+...|..
T Consensus 553 vKFa~~gln~~MiscGADksimFr--~~-qk~~~g~-~f~r~t~t~~ktTlYDm~Vdp~~-------------------- 608 (1080)
T KOG1408|consen 553 VKFACNGLNRKMISCGADKSIMFR--VN-QKASSGR-LFPRHTQTLSKTTLYDMAVDPTS-------------------- 608 (1080)
T ss_pred EEEeecCCceEEEeccCchhhhee--hh-ccccCce-eccccccccccceEEEeeeCCCc--------------------
Confidence 9998877 556666554322111 10 1000011 11111 2345666666664
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc--CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF--FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++++++++|..|+|||+++++....++.. |.+....+...|.|-||++.+.|.++.+||+.++|.
T Consensus 609 -------------k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEc 675 (1080)
T KOG1408|consen 609 -------------KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGEC 675 (1080)
T ss_pred -------------ceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchh
Confidence 89999999999999999999999888764 456788999999999999999999999999999998
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.. ..+| |...|+.+.|++|.++|++.+.||-| -++.++
T Consensus 676 vA------------~m~G-HsE~VTG~kF~nDCkHlISvsgDgCI--FvW~lp 713 (1080)
T KOG1408|consen 676 VA------------QMTG-HSEAVTGVKFLNDCKHLISVSGDGCI--FVWKLP 713 (1080)
T ss_pred hh------------hhcC-cchheeeeeecccchhheeecCCceE--EEEECc
Confidence 74 3344 77889999999999999999999998 555433
No 84
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=228.38 Aligned_cols=306 Identities=20% Similarity=0.336 Sum_probs=223.3
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|+...|.++++.|.|.+|++|+.|..|++||+......+. ..+.+.-.. ...|++++|++.|..|++.+....
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~----~fr~l~P~E--~h~i~sl~ys~Tg~~iLvvsg~aq 237 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMR----SFRQLQPCE--THQINSLQYSVTGDQILVVSGSAQ 237 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccch----hhhccCccc--ccccceeeecCCCCeEEEEecCcc
Confidence 34447899999999999999999999999999986432221 122222222 346999999999999988888889
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCe-EEEEEe---
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-CTAVLR--- 164 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~-~~~~l~--- 164 (689)
.+|+|.+... ..+|..++. ...-....++|...++|.+|+|+.+ .+++++.||+++|||+...+ .+..++
T Consensus 238 akl~DRdG~~-~~e~~KGDQ----YI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~ 312 (641)
T KOG0772|consen 238 AKLLDRDGFE-IVEFSKGDQ----YIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKP 312 (641)
T ss_pred eeEEccCCce-eeeeeccch----hhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeecc
Confidence 9999976532 222211110 0022344578999999999999875 89999999999999998643 233333
Q ss_pred --cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 --GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 --~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+..-.++.++|++|+++||+|+.||.|.+|+..+......+.... .......|.++.||+||++|++-+. ...
T Consensus 313 ~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~-AH~~g~~Itsi~FS~dg~~LlSRg~----D~t 387 (641)
T KOG0772|consen 313 AGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKD-AHLPGQDITSISFSYDGNYLLSRGF----DDT 387 (641)
T ss_pred CCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeee-ccCCCCceeEEEeccccchhhhccC----CCc
Confidence 223578899999999999999999999999986654333222111 1122345999999999999999766 456
Q ss_pred cceeecCCceeeee-ecC--CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-----
Q 040062 243 APVLERGEWAATFD-FLG--HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----- 314 (689)
Q Consensus 243 ~~i~~~~~~~~~~~-l~~--h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----- 314 (689)
+.+|+.+.....+. ..+ ...+-+.++|+|+. ++|++|..
T Consensus 388 LKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~---------------------------------kli~TGtS~~~~~ 434 (641)
T KOG0772|consen 388 LKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD---------------------------------KLILTGTSAPNGM 434 (641)
T ss_pred eeeeeccccccchhhhcCCCccCCCCccccCCCc---------------------------------eEEEecccccCCC
Confidence 67888776654322 111 23345667777775 78888754
Q ss_pred -CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 315 -DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 315 -Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
.|.+.+||..+-..+..+.-. ..+|..+.|+|.-+.|++|+.||.++||-
T Consensus 435 ~~g~L~f~d~~t~d~v~ki~i~-~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 435 TAGTLFFFDRMTLDTVYKIDIS-TASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CCceEEEEeccceeeEEEecCC-CceEEEEeecchhhheeeecCCCceEEEE
Confidence 478999999998888877643 77899999999988999999999999874
No 85
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=233.12 Aligned_cols=364 Identities=19% Similarity=0.243 Sum_probs=264.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCE-EEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY-IASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~-Lasgs~Dg~I~i 92 (689)
..|+++.-+|--..+|.|..+|+|.|+|++. .+.+.+|+.-.+.|+.+.|.-||.. ||+|+..|.+.+
T Consensus 203 s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~-----------dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~ 271 (910)
T KOG1539|consen 203 SRITAIEQSPALDVVAIGLENGTVIIFNLKF-----------DKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAF 271 (910)
T ss_pred cceeEeccCCcceEEEEeccCceEEEEEccc-----------CcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEE
Confidence 6899999999999999999999999999997 7889999855699999999999985 566677799999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC--CC--eEEEEEecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTL-RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS--TG--ICTAVLRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~--~~--~~~~~l~~h~ 167 (689)
||++.. +....+ ..|.+.|..+.|.+....|++++.|+.+++|=.. .| +.++...+|.
T Consensus 272 wDLe~k-----------------kl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs 334 (910)
T KOG1539|consen 272 WDLEKK-----------------KLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHS 334 (910)
T ss_pred EEcCCC-----------------eeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCC
Confidence 999976 333333 4798999999999999999999999998888544 33 5566777899
Q ss_pred CCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCcceeecc----------------------------------------
Q 040062 168 SLVKGVAWD-PIGSFIASQSDDKTVIIWRTSDWSLAHRTD---------------------------------------- 206 (689)
Q Consensus 168 ~~V~~l~~s-pdg~~las~s~Dg~I~iwd~~~~~~~~~~~---------------------------------------- 206 (689)
.+..||.|. .+|.++.+++.|++++.+++......+++.
T Consensus 335 ~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv 414 (910)
T KOG1539|consen 335 APPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNV 414 (910)
T ss_pred CCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcce
Confidence 999999998 577889999999988887752110000000
Q ss_pred -------------------------CcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee---c
Q 040062 207 -------------------------GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF---L 258 (689)
Q Consensus 207 -------------------------~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l---~ 258 (689)
.+..-......+.+++.+++|++.+.+.. ...+.+++..+......| .
T Consensus 415 ~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S----~G~Id~fNmQSGi~r~sf~~~~ 490 (910)
T KOG1539|consen 415 ITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYS----KGTIDRFNMQSGIHRKSFGDSP 490 (910)
T ss_pred eEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEecc----CCeEEEEEcccCeeecccccCc
Confidence 00000001234678889999999888765 456667887777766666 5
Q ss_pred CCCCCEEEEEEcCCcccccccccccc--------ccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE
Q 040062 259 GHNAPIIVVKFNHSMFRRNSASSQEV--------KAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 259 ~h~~~v~~v~fsp~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~ 330 (689)
.|.++|+.++.......+........ +.....+..+........+....+++.+..|-.|+++|+.+.+.++
T Consensus 491 ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR 570 (910)
T KOG1539|consen 491 AHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVR 570 (910)
T ss_pred cccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhH
Confidence 89999999998766532222211110 0000011112222222223344566666677777777777766666
Q ss_pred EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhh
Q 040062 331 VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAA 410 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~ 410 (689)
.+. +|...|++++|||||++|++++.|++|++||+.++.++..+. .......+.|||+|.+||++
T Consensus 571 ~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~--------------vd~~~~sls~SPngD~LAT~ 635 (910)
T KOG1539|consen 571 EFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLL--------------VDSPCTSLSFSPNGDFLATV 635 (910)
T ss_pred Hhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEe--------------cCCcceeeEECCCCCEEEEE
Confidence 655 489999999999999999999999999999999998875442 22358999999999999999
Q ss_pred ccccceeeeeeeccc
Q 040062 411 SAKETTTKKVVSDVQ 425 (689)
Q Consensus 411 s~DG~v~~~~~~~~~ 425 (689)
..|+.- .+.+.+..
T Consensus 636 Hvd~~g-IylWsNks 649 (910)
T KOG1539|consen 636 HVDQNG-IYLWSNKS 649 (910)
T ss_pred EecCce-EEEEEchh
Confidence 988554 46665443
No 86
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=227.60 Aligned_cols=297 Identities=16% Similarity=0.139 Sum_probs=227.6
Q ss_pred eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
.-..+.+|...|.++++.|.|..|++|+.|..|++||+...... ...++.+.- .....|..++|++.+
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~fr~l~P--~E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRSFRQLQP--CETHQINSLQYSVTG 226 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chhhhccCc--ccccccceeeecCCC
Confidence 34567889999999999999999999999999999999876321 111122222 234579999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEE------------ecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceee
Q 040062 138 SILASGSLDNTIHIWNMSTGICTAVL------------RGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~~~~~~l------------~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
..|++.+.....+|+|-.-.+.+... ++|...++|.+|+|+. ..|++++.||+++|||+.+.+....
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 99999998999999997655444433 5788999999999976 5788999999999999987654443
Q ss_pred ccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeee---ecCCCC--CEEEEEEcCCccccccc
Q 040062 205 TDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFD---FLGHNA--PIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 205 ~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~---l~~h~~--~v~~v~fsp~~~~~~~~ 279 (689)
+-.+.........+..++|++||+.|++++. ...+.+|+.+.+...-. -..|.. .|+++.|++++
T Consensus 307 Vik~k~~~g~Rv~~tsC~~nrdg~~iAagc~----DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg------ 376 (641)
T KOG0772|consen 307 VIKTKPAGGKRVPVTSCAWNRDGKLIAAGCL----DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG------ 376 (641)
T ss_pred EEeeccCCCcccCceeeecCCCcchhhhccc----CCceeeeecCCcccccceEeeeccCCCCceeEEEecccc------
Confidence 3333333344556899999999999998876 56778998766543322 236766 89999999987
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC-ceEEeccc-CCCCeEEEEEccCCCeEEEEeC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR-PLFVAKHF-FTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~-~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~ 357 (689)
++|++-+.|+++++||++..+ ++...... ..-.-+.++|||+.++|++|+.
T Consensus 377 ---------------------------~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS 429 (641)
T KOG0772|consen 377 ---------------------------NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTS 429 (641)
T ss_pred ---------------------------chhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEeccc
Confidence 899999999999999998764 44333221 1234678999999999999863
Q ss_pred ------CCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 358 ------DGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 358 ------DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.|.+.+||-.+-+..+.+.- ....|..+.|+|.-..|..++.||++
T Consensus 430 ~~~~~~~g~L~f~d~~t~d~v~ki~i-------------~~aSvv~~~WhpkLNQi~~gsgdG~~ 481 (641)
T KOG0772|consen 430 APNGMTAGTLFFFDRMTLDTVYKIDI-------------STASVVRCLWHPKLNQIFAGSGDGTA 481 (641)
T ss_pred ccCCCCCceEEEEeccceeeEEEecC-------------CCceEEEEeecchhhheeeecCCCce
Confidence 57899999877766654431 13358899999999999999999999
No 87
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=5.8e-25 Score=210.41 Aligned_cols=272 Identities=17% Similarity=0.247 Sum_probs=208.4
Q ss_pred ceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
+.|.+|+||| ...+|+.++.||+||+|+++... ...-+....|.++|.+++|+.||..+++|+.|+.+++
T Consensus 28 DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---------~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~ 98 (347)
T KOG0647|consen 28 DSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---------QLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKL 98 (347)
T ss_pred cchheeEeccccCceEEecccCCceEEEEEecCC---------cccchhhhccCCCeEEEEEccCCceEEeeccCCceEE
Confidence 5899999999 55667788999999999998621 1122456679999999999999999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCe
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS--ILASGSLDNTIHIWNMSTGICTAVLRGHSSLV 170 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~--~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V 170 (689)
||+.++ ....+..|..+|..+.|-+... .|++|+.|.+|+.||++....+..+. -...+
T Consensus 99 wDL~S~------------------Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRv 159 (347)
T KOG0647|consen 99 WDLASG------------------QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERV 159 (347)
T ss_pred EEccCC------------------CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-cccee
Confidence 999997 5566778999999999987655 89999999999999999999988887 44556
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
+++.. ...+++.+..++.|.+|++++...+...... .....+++++...|....+.++-.+. ..+..++...
T Consensus 160 Ya~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~~S----pLk~Q~R~va~f~d~~~~alGsiEGr--v~iq~id~~~ 231 (347)
T KOG0647|consen 160 YAADV--LYPMAVVATAERHIAVYNLENPPTEFKRIES----PLKWQTRCVACFQDKDGFALGSIEGR--VAIQYIDDPN 231 (347)
T ss_pred eehhc--cCceeEEEecCCcEEEEEcCCCcchhhhhcC----cccceeeEEEEEecCCceEeeeecce--EEEEecCCCC
Confidence 66544 3568888999999999999775543322111 12234788888877766655543221 1222233333
Q ss_pred ceeeeeecCCCC---------CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 251 WAATFDFLGHNA---------PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 251 ~~~~~~l~~h~~---------~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
....+.|..|.. .|..++|+|.. ..|++.+.||++.+|
T Consensus 232 ~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h---------------------------------gtlvTaGsDGtf~FW 278 (347)
T KOG0647|consen 232 PKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH---------------------------------GTLVTAGSDGTFSFW 278 (347)
T ss_pred ccCceeEEEeccCCCCCCceEEecceEeeccc---------------------------------ceEEEecCCceEEEe
Confidence 366677777763 46678888864 789999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
|-.....+.... .|..+|++.+|+.+|.+++.+
T Consensus 279 Dkdar~kLk~s~-~~~qpItcc~fn~~G~ifaYA 311 (347)
T KOG0647|consen 279 DKDARTKLKTSE-THPQPITCCSFNRNGSIFAYA 311 (347)
T ss_pred cchhhhhhhccC-cCCCccceeEecCCCCEEEEE
Confidence 988777776655 478999999999999988764
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.5e-24 Score=208.51 Aligned_cols=270 Identities=17% Similarity=0.249 Sum_probs=211.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|.+|.|+|.+..|++++.||++++||... ..+...+ .|..++.+++|.+ ...+++|+.||.|+.+
T Consensus 14 d~IS~v~f~~~~~~LLvssWDgslrlYdv~~-----------~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 14 DGISSVKFSPSSSDLLVSSWDGSLRLYDVPA-----------NSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRY 80 (323)
T ss_pred hceeeEEEcCcCCcEEEEeccCcEEEEeccc-----------hhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEE
Confidence 5799999999999999999999999999986 3333333 4999999999997 4578999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
|+.++ ....+..|...|.||.+++-...+++|+.|++|++||.+.......+. ....|.++
T Consensus 81 Dln~~------------------~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~ 141 (323)
T KOG1036|consen 81 DLNTG------------------NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCM 141 (323)
T ss_pred EecCC------------------cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccc-cCceEEEE
Confidence 99987 344566799999999999988899999999999999999866666665 33478887
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC--Cc
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG--EW 251 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~--~~ 251 (689)
... ++.|++|+.|..+.+||+++.......... .....++++++.|++.-.++++-++.. .+..++.. ..
T Consensus 142 ~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS----~lkyqtR~v~~~pn~eGy~~sSieGRV--avE~~d~s~~~~ 213 (323)
T KOG1036|consen 142 DVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRES----SLKYQTRCVALVPNGEGYVVSSIEGRV--AVEYFDDSEEAQ 213 (323)
T ss_pred ecc--CCEEEEeecCceEEEEEcccccchhhhccc----cceeEEEEEEEecCCCceEEEeecceE--EEEccCCchHHh
Confidence 765 888999999999999999986554422211 123348999999977766665543322 11122222 22
Q ss_pred eeeeeecCCCC---------CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 252 AATFDFLGHNA---------PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 252 ~~~~~l~~h~~---------~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
...+.|..|.. +|..++|+|-. ..|++|+.||.|.+||
T Consensus 214 skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~---------------------------------~tfaTgGsDG~V~~Wd 260 (323)
T KOG1036|consen 214 SKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH---------------------------------GTFATGGSDGIVNIWD 260 (323)
T ss_pred hhceeEEeeecccCCceEEEEeceeEecccc---------------------------------ceEEecCCCceEEEcc
Confidence 44556666643 68889998875 7899999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 357 (689)
..+.+.+..+... ..+|.+++|+.||..||+++.
T Consensus 261 ~~~rKrl~q~~~~-~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 261 LFNRKRLKQLAKY-ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred CcchhhhhhccCC-CCceEEEEeccCCCeEEEEec
Confidence 9999998887654 678999999999999999873
No 89
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.4e-24 Score=208.81 Aligned_cols=300 Identities=18% Similarity=0.268 Sum_probs=216.9
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEE-EEEeCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~D 87 (689)
.+|. ..|++|+|+.||++|||++.|+.|+||++...... ..+.++.- -..+.-+.++|+||-+-+ +++-..
T Consensus 83 KgH~-~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~------eHr~~R~n-ve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 83 KGHK-KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK------EHRCIRQN-VEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hccC-CceeeeEEcCCCceeEEEeCCceEEEEecchhhhh------hhhHhhcc-ccCCCceEEEECCCcceEEEEEccC
Confidence 3677 59999999999999999999999999999862111 11222211 112345889999987654 455556
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
..+++|.+...... ..+-..-.|.....-+.|...|..+-...++.+|++++.|..|.+|+++ |+.+..+....
T Consensus 155 ~~l~vyk~~K~~dG-----~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq 228 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDG-----SGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQ 228 (420)
T ss_pred CEEEEEEeeecccC-----CCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecccc
Confidence 68999987654210 0011112223333344577888888888888999999999999999997 99999988777
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..-+..+.+|+|++|++++.--.|++|.. .|..||.+
T Consensus 229 ~~n~~aavSP~GRFia~~gFTpDVkVwE~-------------------------~f~kdG~f------------------ 265 (420)
T KOG2096|consen 229 SSNYDAAVSPDGRFIAVSGFTPDVKVWEP-------------------------IFTKDGTF------------------ 265 (420)
T ss_pred ccccceeeCCCCcEEEEecCCCCceEEEE-------------------------EeccCcch------------------
Confidence 77788899999999999998888999975 12222221
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC-
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP- 326 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~- 326 (689)
.+....+.+.||...|...+|+++. ..+++.+.||+++|||++-.
T Consensus 266 -qev~rvf~LkGH~saV~~~aFsn~S---------------------------------~r~vtvSkDG~wriwdtdVrY 311 (420)
T KOG2096|consen 266 -QEVKRVFSLKGHQSAVLAAAFSNSS---------------------------------TRAVTVSKDGKWRIWDTDVRY 311 (420)
T ss_pred -hhhhhhheeccchhheeeeeeCCCc---------------------------------ceeEEEecCCcEEEeeccceE
Confidence 1223456789999999999999987 78999999999999998631
Q ss_pred ------CceEEe---cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceee
Q 040062 327 ------RPLFVA---KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLAN 397 (689)
Q Consensus 327 ------~~~~~~---~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~ 397 (689)
+.+... ..........|+++|+|+.|+.+. ...+++|.-+.++....+. ..|.+.|.+
T Consensus 312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~~se~g~~~~~~e------------~~h~~~Is~ 378 (420)
T KOG2096|consen 312 EAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVFASEDGKDYPELE------------DIHSTTISS 378 (420)
T ss_pred ecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEEEcccCccchhHH------------HhhcCceee
Confidence 112111 111233445899999999888765 5589999988876543221 236778999
Q ss_pred eecCchhhhhHhhcc
Q 040062 398 LAETPAQLLLEAASA 412 (689)
Q Consensus 398 l~~Spdg~~Las~s~ 412 (689)
++|++||++++++++
T Consensus 379 is~~~~g~~~atcGd 393 (420)
T KOG2096|consen 379 ISYSSDGKYIATCGD 393 (420)
T ss_pred EEecCCCcEEeeecc
Confidence 999999999999764
No 90
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.94 E-value=5.4e-26 Score=211.74 Aligned_cols=285 Identities=18% Similarity=0.210 Sum_probs=240.6
Q ss_pred eeeecCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 59 LATLRDHFGSVNCVRWAK---HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fsp---dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
..+..+|..+|..++||| +|-+|++++.|+.-.+-+-+++ .-+-+|.+|.+.|+..+.+.
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tg-----------------dwigtfeghkgavw~~~l~~ 69 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTG-----------------DWIGTFEGHKGAVWSATLNK 69 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCC-----------------CcEEeeeccCcceeeeecCc
Confidence 345678999999999996 8999999999998888777666 57888999999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc-ceeeccCcccccCC
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS-LAHRTDGHWAKSLG 214 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~ 214 (689)
+-...++++.|-+-++||.-+|..+..+. |..-|..++|+.|.++|++|+.+..+||||++..+ ...++.++..
T Consensus 70 na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg---- 144 (334)
T KOG0278|consen 70 NATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTG---- 144 (334)
T ss_pred hhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCC----
Confidence 88899999999999999999999999998 99999999999999999999999999999997644 3334444433
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.|+.+.|....+.|+++.. ...+++|+..+......+. ...+|.++.+++++
T Consensus 145 --~Ir~v~wc~eD~~iLSSad----d~tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG--------------------- 196 (334)
T KOG0278|consen 145 --GIRTVLWCHEDKCILSSAD----DKTVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDG--------------------- 196 (334)
T ss_pred --cceeEEEeccCceEEeecc----CCceEEEEeccCcEEEEEe-cCCCCcceeeccCC---------------------
Confidence 3899999999998888744 4678899988877665553 35678888888775
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
+ +++-...+.|.+||..+-.++..+.. ...|.+.+++|+...+++|+.|..++.||+.+++.+..
T Consensus 197 ------------~-ilTia~gssV~Fwdaksf~~lKs~k~--P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~ 261 (334)
T KOG0278|consen 197 ------------R-ILTIAYGSSVKFWDAKSFGLLKSYKM--PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS 261 (334)
T ss_pred ------------C-EEEEecCceeEEeccccccceeeccC--ccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence 4 44555667899999999998887765 45699999999999999999999999999999876532
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
...+|.++|.++.|||||...|+||.||++ ++++
T Consensus 262 ------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTi--rlWQ 295 (334)
T KOG0278|consen 262 ------------YNKGHFGPVHCVRFSPDGELYASGSEDGTI--RLWQ 295 (334)
T ss_pred ------------cccCCCCceEEEEECCCCceeeccCCCceE--EEEE
Confidence 124578899999999999999999999999 7775
No 91
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.93 E-value=1.2e-25 Score=215.29 Aligned_cols=235 Identities=21% Similarity=0.353 Sum_probs=190.7
Q ss_pred eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCC---ccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSG---TTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~---~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
....+..|.+.+.+.+|++||.++|+|+.|..|+|+|++..-. ..+...++ ....--.++++..|...|.++.|+
T Consensus 104 Et~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~--~qa~hPvIRTlYDH~devn~l~FH 181 (430)
T KOG0640|consen 104 ETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGD--TQARHPVIRTLYDHVDEVNDLDFH 181 (430)
T ss_pred ceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCC--cccCCceEeehhhccCcccceeec
Confidence 3455678999999999999999999999999999999973211 11111111 111125788999999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 135 PDDSILASGSLDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
|...+|++++.|++|++||.......+.++ ....+|.+|.|+|.|.+|+.|.+-.++++||+++.++...-.
T Consensus 182 Pre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Qcfvsan------ 255 (430)
T KOG0640|consen 182 PRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSAN------ 255 (430)
T ss_pred chhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecC------
Confidence 999999999999999999997643222222 245789999999999999999999999999998765432221
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
| -.+|.+.|+++.|++.+
T Consensus 256 ------------P-------------------------------d~qht~ai~~V~Ys~t~------------------- 273 (430)
T KOG0640|consen 256 ------------P-------------------------------DDQHTGAITQVRYSSTG------------------- 273 (430)
T ss_pred ------------c-------------------------------ccccccceeEEEecCCc-------------------
Confidence 1 13588999999999987
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCC-CeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQ-SVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++.++++.||.|+|||--+++++..+...|.+ .|.+..|+.+|+|+++.+.|..+++|.+.++..
T Consensus 274 --------------~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~ 339 (430)
T KOG0640|consen 274 --------------SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM 339 (430)
T ss_pred --------------cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce
Confidence 89999999999999999999999998888864 689999999999999999999999999999886
Q ss_pred ccccC
Q 040062 372 GHRLS 376 (689)
Q Consensus 372 ~~~l~ 376 (689)
+....
T Consensus 340 l~~Yt 344 (430)
T KOG0640|consen 340 LKEYT 344 (430)
T ss_pred EEEEe
Confidence 55443
No 92
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=4.2e-24 Score=205.69 Aligned_cols=242 Identities=20% Similarity=0.334 Sum_probs=199.8
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC--EEEEEeC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR--YIASGSD 86 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~--~Lasgs~ 86 (689)
..|.+ +|++++++ +.++|+|+.|-+|+|||+.. ...+..+..|.+.|+++.|.++-. .|++|++
T Consensus 40 ~aH~~-sitavAVs--~~~~aSGssDetI~IYDm~k-----------~~qlg~ll~HagsitaL~F~~~~S~shLlS~sd 105 (362)
T KOG0294|consen 40 SAHAG-SITALAVS--GPYVASGSSDETIHIYDMRK-----------RKQLGILLSHAGSITALKFYPPLSKSHLLSGSD 105 (362)
T ss_pred ccccc-ceeEEEec--ceeEeccCCCCcEEEEeccc-----------hhhhcceeccccceEEEEecCCcchhheeeecC
Confidence 46884 99999986 88999999999999999997 788888889999999999998765 8999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
||.|.+|+.. .|..+..+++|...|+.|+.+|.+++.++.+.|+.++.||+-+|+.-..++-
T Consensus 106 DG~i~iw~~~-----------------~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L- 167 (362)
T KOG0294|consen 106 DGHIIIWRVG-----------------SWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL- 167 (362)
T ss_pred CCcEEEEEcC-----------------CeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc-
Confidence 9999999875 4799999999999999999999999999999999999999998876655542
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...-..+.|+|.|.+|+.+..+ .|-||.+.+..+...+..+.. +.++.|...+. ++++.. ...+.++
T Consensus 168 ~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r-------~l~~~~l~~~~-L~vG~d----~~~i~~~ 234 (362)
T KOG0294|consen 168 KNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKR-------ILCATFLDGSE-LLVGGD----NEWISLK 234 (362)
T ss_pred CCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhcccc-------ceeeeecCCce-EEEecC----CceEEEe
Confidence 2223449999999999988877 699999988777776655421 45566655444 444433 2567788
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
+.........+.+|...|..+.+--+. ++.+|+++++||.|++||++..
T Consensus 235 D~ds~~~~~~~~AH~~RVK~i~~~~~~-------------------------------~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 235 DTDSDTPLTEFLAHENRVKDIASYTNP-------------------------------EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ccCCCccceeeecchhheeeeEEEecC-------------------------------CceEEEEeccCceEEEEEcccc
Confidence 888888888899999999999854332 3479999999999999999865
No 93
>PTZ00421 coronin; Provisional
Probab=99.93 E-value=1.2e-23 Score=229.68 Aligned_cols=280 Identities=17% Similarity=0.216 Sum_probs=206.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASG 143 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasg 143 (689)
|...|.....++++..+++++.+.....|+...+....... +..... .....+.+|...|.+++|+| ++++|+++
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~--~~G~~~--~~~~~l~GH~~~V~~v~fsP~d~~~LaSg 94 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHT--DYGKLA--SNPPILLGQEGPIIDVAFNPFDPQKLFTA 94 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeecc--ccccCC--CCCceEeCCCCCEEEEEEcCCCCCEEEEE
Confidence 34456667777787788888888888889876542211111 000000 11234679999999999999 78899999
Q ss_pred eCCCeEEEEEcCCC-------eEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 144 SLDNTIHIWNMSTG-------ICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 144 s~Dg~I~vwd~~~~-------~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
+.|++|++||+.++ ..+..+.+|...|.+++|+|++ ++|++++.|++|+|||+++++....+..+..
T Consensus 95 S~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~----- 169 (493)
T PTZ00421 95 SEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD----- 169 (493)
T ss_pred eCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC-----
Confidence 99999999999764 3567889999999999999985 7999999999999999999888777766543
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCE-EEEEEcCCccccccccccccccccccccCC
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPI-IVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v-~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.+.+++|+|+|.+|++++. ...+.+|+.........+.+|.+.. ..+.|.++.
T Consensus 170 -~V~sla~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~--------------------- 223 (493)
T PTZ00421 170 -QITSLEWNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRK--------------------- 223 (493)
T ss_pred -ceEEEEEECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCC---------------------
Confidence 3899999999999999876 4567799988877777788887653 456777664
Q ss_pred cccccCccCCCCcEEEEEe----CCCcEEEEeCCCCCceE-EecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEeec
Q 040062 295 TSKIGGKESQPYNVIAIGS----QDRTITVWTTASPRPLF-VAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFEV 368 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs----~Dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~~ 368 (689)
..+++++ .|+.|++||+++..... .....+...+....|++++++|++++ .||.|++||+.+
T Consensus 224 ------------~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~ 291 (493)
T PTZ00421 224 ------------DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN 291 (493)
T ss_pred ------------CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence 4455443 47999999998765333 33222334566778999999999987 599999999998
Q ss_pred cccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 369 KELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 369 ~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
+++.... .+. +...+..++|.|.
T Consensus 292 ~~~~~~~-----------~~~-s~~~~~g~~~~pk 314 (493)
T PTZ00421 292 ERLTFCS-----------SYS-SVEPHKGLCMMPK 314 (493)
T ss_pred CceEEEe-----------ecc-CCCCCcceEeccc
Confidence 7754321 121 2334677777774
No 94
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.93 E-value=6.6e-26 Score=225.00 Aligned_cols=287 Identities=18% Similarity=0.190 Sum_probs=234.5
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
.....+..|.+.|..+.|-++...|++|+.|..|++|+...+.. ....++.+..+.|+.+.|.++
T Consensus 166 ~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~---------------~~~~tLaGs~g~it~~d~d~~ 230 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKS---------------ELISTLAGSLGNITSIDFDSD 230 (459)
T ss_pred hhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchh---------------hhhhhhhccCCCcceeeecCC
Confidence 44566778999999999999989999999999999999987631 467778888899999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
++++++++.|+.+++|++.+.+...++.+|+..|+++.|.-....+++++.|.+|++||+....+..++....
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S------- 303 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGS------- 303 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccc-------
Confidence 9999999999999999999999999999999999999998877779999999999999998877766554321
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
.+..+..+ ...+++++-+ ..+++|+............+. .|+++..++++
T Consensus 304 ~cnDI~~~--~~~~~SgH~D----kkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g----------------------- 353 (459)
T KOG0288|consen 304 QCNDIVCS--ISDVISGHFD----KKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDG----------------------- 353 (459)
T ss_pred cccceEec--ceeeeecccc----cceEEEeccCCceeeEeecCc-ceeeEeeccCC-----------------------
Confidence 13333333 3344444432 337899977777777766654 89999998886
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc---CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF---FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
..|.+++.|..+.+.|+++......+... .....+.++|||++.|+++||.||.|+||++.++++..
T Consensus 354 ----------~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~ 423 (459)
T KOG0288|consen 354 ----------LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK 423 (459)
T ss_pred ----------eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEE
Confidence 67888899999999999998776655432 12348899999999999999999999999999999877
Q ss_pred ccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 374 RLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 374 ~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.+... +.+. .|++++|+|.|..|++++.++.+
T Consensus 424 ~l~~s----------~s~~-aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 424 VLSLS----------TSNA-AITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EeccC----------CCCc-ceEEEEEcCCCchhhcccCCcce
Confidence 65421 2222 59999999999999999998876
No 95
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=1.2e-24 Score=219.36 Aligned_cols=268 Identities=22% Similarity=0.348 Sum_probs=211.1
Q ss_pred CceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYIAS 83 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~Las 83 (689)
..-+.|.| .|+.+.+-|.. ..+|+++..+.|+|||........... .....-..+.+|.+.=+.+.|++. .-+|++
T Consensus 118 ~~~i~h~g-EVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~-~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 118 SQKINHDG-EVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS-GECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred EEeccCCc-cchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc-ccCCCceEEEeecccccccccccccceeEee
Confidence 33467885 99999999966 567777888999999998632211111 023344578889987888999984 348999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcC--CCeEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMS--TGICT 160 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~--~~~~~ 160 (689)
++.|+.|++||+...... .........+.+|...|.+++|++- ..+|++++.|+.+.|||++ +.+..
T Consensus 196 ~~~d~~i~lwdi~~~~~~----------~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~ 265 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKE----------DKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPS 265 (422)
T ss_pred ccCCCcEEEEeccccccC----------CccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCc
Confidence 999999999999876321 0112466778899999999999985 4588999999999999999 56677
Q ss_pred EEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 161 AVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
....+|...|.|++|+|- +..||+++.|++|.+||+|+...
T Consensus 266 ~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~-------------------------------------- 307 (422)
T KOG0264|consen 266 HSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK-------------------------------------- 307 (422)
T ss_pred ccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc--------------------------------------
Confidence 788899999999999995 56788999999999999987433
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
....+.+|...|..+.|+|.. ..+||+++.|+.+.
T Consensus 308 -------------~lh~~e~H~dev~~V~WSPh~--------------------------------etvLASSg~D~rl~ 342 (422)
T KOG0264|consen 308 -------------PLHTFEGHEDEVFQVEWSPHN--------------------------------ETVLASSGTDRRLN 342 (422)
T ss_pred -------------CceeccCCCcceEEEEeCCCC--------------------------------CceeEecccCCcEE
Confidence 112467899999999999984 47999999999999
Q ss_pred EEeCCCCC-------------ceEEecccCCCCeEEEEEccCCCe-EEEEeCCCcEEEEEeec
Q 040062 320 VWTTASPR-------------PLFVAKHFFTQSVVDLSWSPDGYS-LFACSLDGTVANFHFEV 368 (689)
Q Consensus 320 iwd~~~~~-------------~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~DG~I~vwd~~~ 368 (689)
|||+..-. .+..+..+|...|.++.|+|+..+ |++.+.|+.+.||++..
T Consensus 343 vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 343 VWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99987421 123455678999999999998775 56689999999999763
No 96
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.4e-23 Score=201.36 Aligned_cols=270 Identities=24% Similarity=0.396 Sum_probs=209.7
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYI 81 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~L 81 (689)
-+|--.+|. +-|.|+.|.+.|+++|||+.|++|+|||... +..+..+-...+.|.+.|..|.|.+ -|+.+
T Consensus 5 ~~pi~s~h~-DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~-------~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 5 MAPIDSGHK-DLIHDVSFDFYGRRMATCSSDQTVKIWDSTS-------DSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccccccCCc-ceeeeeeecccCceeeeccCCCcEEEEeccC-------CCCceEEeeeEEecCCcEEEEEecCccccceE
Confidence 445556788 6999999999999999999999999999754 3345678888899999999999976 58999
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCe-
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGI- 158 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~- 158 (689)
|+|+.|+++.||.-... ........|....++......|+++.|.|. |-.||+++.||.|+||+.-...
T Consensus 77 A~cS~Drtv~iWEE~~~--------~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEK--------SEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred EEEecCCceeeeeeccc--------ccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc
Confidence 99999999999986432 122244678999999999999999999996 6699999999999999875432
Q ss_pred -----EEEEEe-------cCCCCeEEEEEccC---CCEEEEEeCC-----CeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 159 -----CTAVLR-------GHSSLVKGVAWDPI---GSFIASQSDD-----KTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 159 -----~~~~l~-------~h~~~V~~l~~spd---g~~las~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
+...+. .+.....|+.|+|. ..+|+.|+.+ +.++||.....
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~------------------- 209 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN------------------- 209 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-------------------
Confidence 222232 35677889999974 3578888765 35666654321
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
+ +.|.....+.+|..+|+.++|.|+..+
T Consensus 210 --------~---------------------rKw~kva~L~d~~dpI~di~wAPn~Gr----------------------- 237 (361)
T KOG2445|consen 210 --------G---------------------RKWLKVAELPDHTDPIRDISWAPNIGR----------------------- 237 (361)
T ss_pred --------c---------------------ceeeeehhcCCCCCcceeeeeccccCC-----------------------
Confidence 1 123333456789999999999999622
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCC-----------------ce--EEecccCCCCeEEEEEccCCCeEEEEeCCC
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPR-----------------PL--FVAKHFFTQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~-----------------~~--~~~~~~h~~~V~~l~~spdg~~L~sgs~DG 359 (689)
.+.+||+++.|| |+||.+...+ ++ ......|...|..+.|.-.|..|++.+.||
T Consensus 238 ------~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG 310 (361)
T KOG2445|consen 238 ------SYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDG 310 (361)
T ss_pred ------ceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCc
Confidence 448999999999 9999987421 11 122346888999999999999999999999
Q ss_pred cEEEEEee
Q 040062 360 TVANFHFE 367 (689)
Q Consensus 360 ~I~vwd~~ 367 (689)
.|++|...
T Consensus 311 ~VRLWkan 318 (361)
T KOG2445|consen 311 CVRLWKAN 318 (361)
T ss_pred eeeehhhh
Confidence 99999743
No 97
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.93 E-value=4.6e-24 Score=200.88 Aligned_cols=254 Identities=17% Similarity=0.289 Sum_probs=207.0
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
+-+|.| .|+||+++-+.++|+||+.|.+++|||+++ ++++.++. ....|..+.|+.+|++++.+.++
T Consensus 48 y~GHtG-avW~~Did~~s~~liTGSAD~t~kLWDv~t-----------Gk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~ 114 (327)
T KOG0643|consen 48 YDGHTG-AVWCCDIDWDSKHLITGSADQTAKLWDVET-----------GKQLATWK-TNSPVKRVDFSFGGNLILASTDK 114 (327)
T ss_pred ecCCCc-eEEEEEecCCcceeeeccccceeEEEEcCC-----------CcEEEEee-cCCeeEEEeeccCCcEEEEEehh
Confidence 456885 999999999999999999999999999998 89999887 56789999999999988887654
Q ss_pred -----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEE
Q 040062 88 -----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTA 161 (689)
Q Consensus 88 -----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~ 161 (689)
+.|.++|++.... +...-.....+..+...++.+-|.|-+.+|++|..||.|.+||++++ +.+.
T Consensus 115 ~mg~~~~v~~fdi~~~~~----------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~ 184 (327)
T KOG0643|consen 115 QMGYTCFVSVFDIRDDSS----------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVD 184 (327)
T ss_pred hcCcceEEEEEEccCChh----------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeee
Confidence 6799999986531 11111456777788899999999999999999999999999999997 4556
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
..+.|...|+.|.+++|..++++++.|.+-++||+++.+.+.++....+ +++.+++|-..+++.+++.+....
T Consensus 185 s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~P-------vN~aaisP~~d~VilgGGqeA~dV 257 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERP-------VNTAAISPLLDHVILGGGQEAMDV 257 (327)
T ss_pred chhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeeccc-------ccceecccccceEEecCCceeeee
Confidence 6678999999999999999999999999999999999999888765433 789999998888888766443321
Q ss_pred ccceeecCCc----------eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 242 SAPVLERGEW----------AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 242 ~~~i~~~~~~----------~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
....-..+.+ +..-.+.+|-++|..++|+|++ +..++
T Consensus 258 TTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG---------------------------------ksYsS 304 (327)
T KOG0643|consen 258 TTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG---------------------------------KSYSS 304 (327)
T ss_pred eeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCC---------------------------------ccccc
Confidence 1111111111 1223467999999999999998 78999
Q ss_pred EeCCCcEEEEeCC
Q 040062 312 GSQDRTITVWTTA 324 (689)
Q Consensus 312 gs~Dg~I~iwd~~ 324 (689)
|++||.|++.-..
T Consensus 305 GGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 305 GGEDGYVRLHHFD 317 (327)
T ss_pred CCCCceEEEEEec
Confidence 9999999998554
No 98
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=2.4e-24 Score=201.43 Aligned_cols=242 Identities=17% Similarity=0.293 Sum_probs=197.0
Q ss_pred ceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~ 91 (689)
+.++.++|+++. +.+++++.||+++|||+.. ....++.++.|...|.++.|++ ++..+++++.|++|+
T Consensus 61 D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~----------~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiK 130 (311)
T KOG0277|consen 61 DGLFDVAWSENHENQVIAASGDGSLRLFDLTM----------PSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIK 130 (311)
T ss_pred cceeEeeecCCCcceEEEEecCceEEEeccCC----------CCcchhHHHhhhhheEEeccccccceeEEeeccCCceE
Confidence 469999999965 6788999999999999654 3568899999999999999998 566788889999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCe
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLV 170 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V 170 (689)
+|+.... +.+.++.+|...|...+|+|. .+.+++++.|+.+++||++..-....+..|...|
T Consensus 131 LW~~~r~-----------------~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Ei 193 (311)
T KOG0277|consen 131 LWDPNRP-----------------NSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEI 193 (311)
T ss_pred eecCCCC-----------------cceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEecccee
Confidence 9998876 577889999999999999996 5699999999999999998755555589999999
Q ss_pred EEEEEcc-CCCEEEEEeCCCeEEEEECCCCc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 171 KGVAWDP-IGSFIASQSDDKTVIIWRTSDWS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 171 ~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
.|+.|+. +.+.|+|++.|+.|++||+++.+ .+..+.++.-. |+++.|||...-++++..+ ....++|+.
T Consensus 194 l~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~A------VRkvk~Sph~~~lLaSasY---DmT~riw~~ 264 (311)
T KOG0277|consen 194 LCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLA------VRKVKFSPHHASLLASASY---DMTVRIWDP 264 (311)
T ss_pred EeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceE------EEEEecCcchhhHhhhccc---cceEEeccc
Confidence 9999998 56789999999999999998754 44455555433 9999999987666555443 345667765
Q ss_pred CCce-eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 249 GEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 249 ~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.... .......|..-+..+.|++. +..++|+++.|..++||+-
T Consensus 265 ~~~ds~~e~~~~HtEFv~g~Dws~~--------------------------------~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 265 ERQDSAIETVDHHTEFVCGLDWSLF--------------------------------DPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ccchhhhhhhhccceEEeccccccc--------------------------------cCceeeecccccceeeecc
Confidence 5332 22334567888888888876 3478999999999999983
No 99
>PTZ00420 coronin; Provisional
Probab=99.92 E-value=6.6e-23 Score=224.90 Aligned_cols=253 Identities=18% Similarity=0.297 Sum_probs=188.5
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCe----
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGI---- 158 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~---- 158 (689)
|+.++.|++|+.... ..+..+.+|...|.+++|+|+ +.+|++|+.|+.|+|||+.++.
T Consensus 50 GG~~gvI~L~~~~r~-----------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~ 112 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-----------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVK 112 (568)
T ss_pred CCceeEEEeeecCCC-----------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccc
Confidence 556788888887654 467788999999999999997 7899999999999999997642
Q ss_pred ----EEEEEecCCCCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 159 ----CTAVLRGHSSLVKGVAWDPIGSF-IASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 159 ----~~~~l~~h~~~V~~l~~spdg~~-las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.+..+.+|...|.+++|+|++.. |++++.|++|+|||+++++....+..+ ..+.+++|+++|.+|+++
T Consensus 113 ~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~-------~~V~SlswspdG~lLat~ 185 (568)
T PTZ00420 113 EIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMP-------KKLSSLKWNIKGNLLSGT 185 (568)
T ss_pred ccccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecC-------CcEEEEEECCCCCEEEEE
Confidence 34567889999999999999875 578999999999999998876655422 238999999999999987
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
+. ...+++|+.........+.+|.+.+....+...+ +++++.+|++++
T Consensus 186 s~----D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~----------------------------fs~d~~~IlTtG 233 (568)
T PTZ00420 186 CV----GKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDG----------------------------LGGDDNYILSTG 233 (568)
T ss_pred ec----CCEEEEEECCCCcEEEEEecccCCceeEEEEeee----------------------------EcCCCCEEEEEE
Confidence 64 3567899998888888888998876544332211 012347888887
Q ss_pred CCC----cEEEEeCCC-CCceEEeccc-CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhc
Q 040062 314 QDR----TITVWTTAS-PRPLFVAKHF-FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSR 387 (689)
Q Consensus 314 ~Dg----~I~iwd~~~-~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~ 387 (689)
.|+ .|+|||++. .+++...... +...+......++|.++++|+.|+.|++|++..+.+ +.+ ..
T Consensus 234 ~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l----------~~ 302 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKV----------NE 302 (568)
T ss_pred cCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE-Eee----------cc
Confidence 774 799999995 5566544321 223333334455688999999999999999976643 222 12
Q ss_pred cCCccCceeeeecCchh
Q 040062 388 YGDVRGRLANLAETPAQ 404 (689)
Q Consensus 388 ~g~~~~~I~~l~~Spdg 404 (689)
|. +...+.+++|.|+.
T Consensus 303 ~~-s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 303 YK-SCSPFRSFGFLPKQ 318 (568)
T ss_pred cc-cCCCccceEEcccc
Confidence 22 44567888999864
No 100
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-23 Score=224.44 Aligned_cols=284 Identities=24% Similarity=0.356 Sum_probs=228.1
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
+.|.+ .-+.|+|.|+|++|.+++.||.|++|+..... ....++..+...|.+++.. +.+|++|+.++
T Consensus 10 yaht~-G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~----------e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~ 76 (933)
T KOG1274|consen 10 YAHTG-GLTLICYDPDGEFICTCGSDGDIRKWKTNSDE----------EEPETIDISGELVSSIACY--SNHFLTGSEQN 76 (933)
T ss_pred hhccC-ceEEEEEcCCCCEEEEecCCCceEEeecCCcc----------cCCchhhccCceeEEEeec--ccceEEeeccc
Confidence 46663 69999999999999999999999999987621 2222333377778887775 45999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS 168 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~ 168 (689)
+|.+|.+..+. .-..+...+-++.+++|+.+|+++|.|+.|-.|++.++.+......+++|..
T Consensus 77 tv~~y~fps~~-----------------~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a 139 (933)
T KOG1274|consen 77 TVLRYKFPSGE-----------------EDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA 139 (933)
T ss_pred eEEEeeCCCCC-----------------ccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence 99999998773 2223344567899999999999999999999999999999999999999999
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc--CCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS--LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~--~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
+|.++.|+|.+++||+.+-||.|+|||+.++.+...+..-.... .....+..++|+|+|..+++... ...+.++
T Consensus 140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy 215 (933)
T KOG1274|consen 140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVY 215 (933)
T ss_pred ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEE
Confidence 99999999999999999999999999999998888776543322 12345778999999777776654 5677799
Q ss_pred ecCCceeeeeecC--CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 247 ERGEWAATFDFLG--HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 247 ~~~~~~~~~~l~~--h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.+..|...+.+.. +...+.++.|+|+| .|||+++.||.|.|||++
T Consensus 216 ~r~~we~~f~Lr~~~~ss~~~~~~wsPnG---------------------------------~YiAAs~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 216 SRKGWELQFKLRDKLSSSKFSDLQWSPNG---------------------------------KYIAASTLDGQILVWNVD 262 (933)
T ss_pred ccCCceeheeecccccccceEEEEEcCCC---------------------------------cEEeeeccCCcEEEEecc
Confidence 9999998887764 34458999999997 899999999999999998
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
+... +.....|.+++|.|+...|-.-...|...+|
T Consensus 263 t~~~-----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 263 THER-----HEFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred cchh-----ccccceeEEEecCCCCCeeEEEeeccccccC
Confidence 8222 2235689999999998766554444444433
No 101
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.92 E-value=1.3e-23 Score=209.74 Aligned_cols=246 Identities=18% Similarity=0.331 Sum_probs=209.2
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|+++.|+|+...+++++.|-.|+||.... .........|.++|+.+..+|.|.||++++.
T Consensus 256 ~~~Gh~-kki~~v~~~~~~~~v~~aSad~~i~vws~~~-----------~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~ 323 (506)
T KOG0289|consen 256 TLKGHT-KKITSVKFHKDLDTVITASADEIIRVWSVPL-----------SSEPTSSRPHEEPVTGLSLHPTGEYLLSASN 323 (506)
T ss_pred hccCcc-eEEEEEEeccchhheeecCCcceEEeecccc-----------ccCccccccccccceeeeeccCCcEEEEecC
Confidence 456788 6999999999999999999999999999876 3455667789999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR--GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
|++..+.|++++. .+.... ...-.+++++|+|||.+|.+|..|+.|+|||+.++..+..|.
T Consensus 324 d~~w~Fsd~~~g~-----------------~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp 386 (506)
T KOG0289|consen 324 DGTWAFSDISSGS-----------------QLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP 386 (506)
T ss_pred CceEEEEEccCCc-----------------EEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC
Confidence 9999999999883 333322 233458999999999999999999999999999999999999
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
+|.++|+.|+|+.+|-||+++++|+.|++||+|..+...++...... .+..+.|...|.+++.++. ...++
T Consensus 387 ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-----~v~s~~fD~SGt~L~~~g~----~l~Vy 457 (506)
T KOG0289|consen 387 GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-----EVNSLSFDQSGTYLGIAGS----DLQVY 457 (506)
T ss_pred CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-----cceeEEEcCCCCeEEeecc----eeEEE
Confidence 99999999999999999999999999999999988776666544321 3789999999999999843 22333
Q ss_pred eee--cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 245 VLE--RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 245 i~~--~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
+.. ...|.....+..|.+..+.+.|.... .++++++.|..++++.
T Consensus 458 ~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a---------------------------------q~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 458 ICKKKTKSWTEIKELADHSGLSTGVRFGEHA---------------------------------QYLASTSMDAILRLYA 504 (506)
T ss_pred EEecccccceeeehhhhcccccceeeecccc---------------------------------eEEeeccchhheEEee
Confidence 333 45888888899999999999997765 8999999999988875
Q ss_pred C
Q 040062 323 T 323 (689)
Q Consensus 323 ~ 323 (689)
+
T Consensus 505 ~ 505 (506)
T KOG0289|consen 505 L 505 (506)
T ss_pred c
Confidence 4
No 102
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2e-24 Score=219.14 Aligned_cols=280 Identities=19% Similarity=0.272 Sum_probs=228.3
Q ss_pred CCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 65 HFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 65 h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
....|.+++|+|... -+|+.+ .-.+.||+..+. ...+.+......|.+++|..||++|++|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~-----------------~~~k~~srFk~~v~s~~fR~DG~LlaaG 86 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTR-----------------SVRKTFSRFKDVVYSVDFRSDGRLLAAG 86 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchh-----------------hhhhhHHhhccceeEEEeecCCeEEEcc
Confidence 345799999999543 344443 357999998776 3444455567889999999999999999
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
+..|.|+|||+.+...+..+.+|+.+|..+.|+|++ ..|++|++|+.+++||+.+......+.++ ..++++.+
T Consensus 87 D~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~h------tDYVR~g~ 160 (487)
T KOG0310|consen 87 DESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGH------TDYVRCGD 160 (487)
T ss_pred CCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCC------cceeEeec
Confidence 999999999988877888999999999999999955 67888999999999999988865566665 45699999
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
|+|-..+++.++++ ++.+++|+.........-..|..+|..+.|-|.+
T Consensus 161 ~~~~~~hivvtGsY---Dg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsg----------------------------- 208 (487)
T KOG0310|consen 161 ISPANDHIVVTGSY---DGKVRLWDTRSLTSRVVELNHGCPVESVLALPSG----------------------------- 208 (487)
T ss_pred cccCCCeEEEecCC---CceEEEEEeccCCceeEEecCCCceeeEEEcCCC-----------------------------
Confidence 99998877776654 5678899987774444445799999999999886
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHH
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDE 382 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~ 382 (689)
..|++++. +.+++||+-+|..+......|...|+||++..++..|++++.|+.|++||+.+-++.+.+.
T Consensus 209 ----s~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~------ 277 (487)
T KOG0310|consen 209 ----SLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWK------ 277 (487)
T ss_pred ----CEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeee------
Confidence 67777764 6799999997776665555589999999999999999999999999999988777765442
Q ss_pred HHHhccCCccCceeeeecCchhhhhHhhccccceeee
Q 040062 383 LKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKK 419 (689)
Q Consensus 383 ~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~ 419 (689)
..++|.+++.+||++.++.|..||.+..+
T Consensus 278 --------~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 278 --------YPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred --------cccceeeEEecCCCceEEEecccceeeee
Confidence 33479999999999999999999999444
No 103
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.92 E-value=1.4e-23 Score=206.54 Aligned_cols=281 Identities=22% Similarity=0.314 Sum_probs=219.9
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
++.+..+. |...|.+|... ++++++|+.||.+++||... +....+.+|.+.|.+++|.-
T Consensus 96 P~pl~~~~-hdDWVSsv~~~--~~~IltgsYDg~~riWd~~G------------------k~~~~~~Ght~~ik~v~~v~ 154 (423)
T KOG0313|consen 96 PKPLQCFL-HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKG------------------KSIKTIVGHTGPIKSVAWVI 154 (423)
T ss_pred CCcccccc-chhhhhhhccc--CceEEEeecCCeeEEEecCC------------------ceEEEEecCCcceeeeEEEe
Confidence 44444444 88888888887 78999999999999999876 58889999999999988854
Q ss_pred CCC---EEEEEeCCCeEEEEEcCCCeE----EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC----------
Q 040062 136 DDS---ILASGSLDNTIHIWNMSTGIC----TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD---------- 198 (689)
Q Consensus 136 dg~---~Lasgs~Dg~I~vwd~~~~~~----~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~---------- 198 (689)
.+. .|++++.|.++++|-++.++. +...++|...|.++...++|..+++++.|.+|.||+..+
T Consensus 155 ~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 155 KNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred cCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccc
Confidence 333 699999999999999877643 334459999999999999999999999999999999321
Q ss_pred ---------------CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCC
Q 040062 199 ---------------WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAP 263 (689)
Q Consensus 199 ---------------~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~ 263 (689)
..++..+.+|.. .+..+.|++ ...+++++- .+.+..|+.........+.+ ...
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~------~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~-~ks 302 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTE------PVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTT-NKS 302 (423)
T ss_pred hhhhhhhhhhhcccccCceEEeccccc------ceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeec-Ccc
Confidence 112222333333 388999998 555555544 57888998877666555443 567
Q ss_pred EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC--ceEEecccCCCCeE
Q 040062 264 IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR--PLFVAKHFFTQSVV 341 (689)
Q Consensus 264 v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~--~~~~~~~~h~~~V~ 341 (689)
+.++.++|.. ++|++|+.|..|++||-+++. .+.....+|.+.|.
T Consensus 303 l~~i~~~~~~---------------------------------~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVs 349 (423)
T KOG0313|consen 303 LNCISYSPLS---------------------------------KLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVS 349 (423)
T ss_pred eeEeeccccc---------------------------------ceeeecCCCCceeecCCCCCCCceeEEeeecchhhhh
Confidence 8889988875 899999999999999998763 34444457899999
Q ss_pred EEEEccCC-CeEEEEeCCCcEEEEEeeccc-cccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 342 DLSWSPDG-YSLFACSLDGTVANFHFEVKE-LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 342 ~l~~spdg-~~L~sgs~DG~I~vwd~~~~~-l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
++.|+|.. ..|++++.|+++++||+++.. .++ ....|.+.|.++.|+. +.+|++|+.|.++
T Consensus 350 svkwsp~~~~~~~S~S~D~t~klWDvRS~k~ply-------------dI~~h~DKvl~vdW~~-~~~IvSGGaD~~l 412 (423)
T KOG0313|consen 350 SVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLY-------------DIAGHNDKVLSVDWNE-GGLIVSGGADNKL 412 (423)
T ss_pred heecCCCCceEEEEEecCCeEEEEEeccCCCcce-------------eeccCCceEEEEeccC-CceEEeccCcceE
Confidence 99999965 567889999999999998765 332 2234777899999986 6689999999999
No 104
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=2.6e-23 Score=218.58 Aligned_cols=283 Identities=23% Similarity=0.345 Sum_probs=233.8
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEE-EEEcC-CCCEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNC-VRWAK-HGRYIA 82 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~fsp-dg~~La 82 (689)
.....+|. +.|..+++.+.. .++++++||++++|+-.. ........+.+|.+.|.+ ++|.+ ++-.|+
T Consensus 7 s~~l~gH~-~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~---------~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~ 75 (745)
T KOG0301|consen 7 SHELEGHK-SDVRAVAVTDGV-CIISGSRDGTVKVWAKKG---------KQYLETHAFEGPKGFIANSICYAESDKGRLV 75 (745)
T ss_pred EEEeccCc-cchheeEecCCe-EEeecCCCCceeeeeccC---------cccccceecccCcceeeccceeccccCcceE
Confidence 34456787 688888877655 789999999999999754 113333567788898888 88886 445699
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
+|+.|.+|.+|.+... .....+++|...|.++....++. |++|+.|.++++|-. +++...
T Consensus 76 ~g~~D~~i~v~~~~~~-----------------~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~ 135 (745)
T KOG0301|consen 76 VGGMDTTIIVFKLSQA-----------------EPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYS 135 (745)
T ss_pred eecccceEEEEecCCC-----------------CchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcc
Confidence 9999999999999877 67888999999999999887776 999999999999975 566677
Q ss_pred EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+.+|+..|+++.+-|++ .++||+.|.+|++|.- ++.++++.+|..- ++.+++.+++.++.+++ ...
T Consensus 136 l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~------VRgL~vl~~~~flScsN-----Dg~ 201 (745)
T KOG0301|consen 136 LQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDC------VRGLAVLDDSHFLSCSN-----DGS 201 (745)
T ss_pred cCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhccchhh------eeeeEEecCCCeEeecC-----Cce
Confidence 99999999999999988 7889999999999975 7788888887654 99999999999888865 377
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
++.|+. .......+.+|...++++....+. ..++++++|++++||+
T Consensus 202 Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~---------------------------------~~Ivs~gEDrtlriW~ 247 (745)
T KOG0301|consen 202 IRLWDL-DGEVLLEMHGHTNFVYSISMALSD---------------------------------GLIVSTGEDRTLRIWK 247 (745)
T ss_pred EEEEec-cCceeeeeeccceEEEEEEecCCC---------------------------------CeEEEecCCceEEEee
Confidence 888988 667778899999999999965554 7999999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.. .+...+... ..+|+++.+-++|. +++|+.||.||||..+...
T Consensus 248 ~~--e~~q~I~lP-ttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 248 KD--ECVQVITLP-TTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred cC--ceEEEEecC-ccceEEEEEeeCCC-EEEeccCceEEEEEecccc
Confidence 76 666666543 55799999988887 6677789999999987544
No 105
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=9.9e-24 Score=212.48 Aligned_cols=255 Identities=20% Similarity=0.310 Sum_probs=203.7
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
++.+..|. ..|.++++|+||+|||+|+.|..|.||++.+ .+.+..+.+|.+.|.+++|-.....|+++
T Consensus 195 k~~r~~h~-keil~~avS~Dgkylatgg~d~~v~Iw~~~t-----------~ehv~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 195 KESRKGHV-KEILTLAVSSDGKYLATGGRDRHVQIWDCDT-----------LEHVKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred Cccccccc-ceeEEEEEcCCCcEEEecCCCceEEEecCcc-----------cchhhcccccccceeeeeeecCccceeee
Confidence 34446788 5999999999999999999999999999998 78888899999999999999988899999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
+.|+.|++|+++.. ..+.++.+|...|..|.-..-++.+-+|+.|+++++|++ ..+....++
T Consensus 263 s~Drsvkvw~~~~~-----------------s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi-~eesqlifr 324 (479)
T KOG0299|consen 263 SADRSVKVWSIDQL-----------------SYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKI-PEESQLIFR 324 (479)
T ss_pred ecCCceEEEehhHh-----------------HHHHHHhCCccceeeechhcccceEEeccccceeEEEec-cccceeeee
Confidence 99999999999876 567788899999999998877777778889999999999 444555678
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
+|.+.+-|++|-. ...|++|++||.|.+|++-..+++........-. |+.
T Consensus 325 g~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~------------~~~----------------- 374 (479)
T KOG0299|consen 325 GGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVI------------PEL----------------- 374 (479)
T ss_pred CCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeecccccc------------CCc-----------------
Confidence 8999999999974 5678999999999999998877776654332210 000
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.-..+...|++++..|.. +++++|+.+|.|++|-+.
T Consensus 375 -----------~~~~~~~Witsla~i~~s---------------------------------dL~asGS~~G~vrLW~i~ 410 (479)
T KOG0299|consen 375 -----------DPVNGNFWITSLAVIPGS---------------------------------DLLASGSWSGCVRLWKIE 410 (479)
T ss_pred -----------cccccccceeeeEecccC---------------------------------ceEEecCCCCceEEEEec
Confidence 011223467777777765 899999999999999998
Q ss_pred CC----CceEEecccCCCCeEEEEEccCCCeEEEE-eCCCcEEEEE
Q 040062 325 SP----RPLFVAKHFFTQSVVDLSWSPDGYSLFAC-SLDGTVANFH 365 (689)
Q Consensus 325 ~~----~~~~~~~~~h~~~V~~l~~spdg~~L~sg-s~DG~I~vwd 365 (689)
.+ .++..+. ..+.|++|+|+++|++|++| +....+-=|-
T Consensus 411 ~g~r~i~~l~~ls--~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 411 DGLRAINLLYSLS--LVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CCccccceeeecc--cccEEEEEEEccCCCEEEEecccccccceee
Confidence 87 3333333 36789999999999977665 4444443343
No 106
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=2.3e-24 Score=224.77 Aligned_cols=286 Identities=20% Similarity=0.350 Sum_probs=240.8
Q ss_pred EEEEc-CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 18 SIDVQ-PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 18 si~~s-pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
.+..+ |.+++|+|||.||.|++|++.......+ ...+.++..|...|+.+....+++.|+|++.|-+|++|+..
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s-----~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~ 103 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS-----TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAH 103 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcc-----cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecc
Confidence 44444 3567799999999999999986332221 23678899999999999999999999999999999999988
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE-cCCCCEEEEEeCCCeEEEEEcCCCe--EEEE--------Ee-
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW-SPDDSILASGSLDNTIHIWNMSTGI--CTAV--------LR- 164 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~-spdg~~Lasgs~Dg~I~vwd~~~~~--~~~~--------l~- 164 (689)
.+.. -+..+++.|...|.||++ .++...+|+|+.|+.|.+||++++. .+.. +.
T Consensus 104 ~~~~---------------~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 104 KDNT---------------FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred cCcc---------------hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 7631 356778889999999999 7788899999999999999999772 2222 22
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
++...|++++.++.|..|++|+..+.|++||-++.+.+..+.+|... |+.+..++||+.+++++. ...++
T Consensus 169 G~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdN------Vr~ll~~dDGt~~ls~sS----DgtIr 238 (735)
T KOG0308|consen 169 GPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDN------VRVLLVNDDGTRLLSASS----DGTIR 238 (735)
T ss_pred CCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccc------eEEEEEcCCCCeEeecCC----CceEE
Confidence 78899999999999999999999999999999999999999998776 999999999999999987 56788
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
+|+.+...+...+..|...|+++..+|+. ..+++|+.||.|..=|++
T Consensus 239 lWdLgqQrCl~T~~vH~e~VWaL~~~~sf---------------------------------~~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHKEGVWALQSSPSF---------------------------------THVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eeeccccceeeeEEeccCceEEEeeCCCc---------------------------------ceEEecCCCCcEEecccC
Confidence 99999999999999999999999998875 799999999999999999
Q ss_pred CC-CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 325 SP-RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 325 ~~-~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+. +....++. ..+|..+..+.+.+-+-+++.|+.|+-|..+.
T Consensus 286 n~~~~tlick~--daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 286 NPAKSTLICKE--DAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred CchhheEeecC--CCchhhhhhccccCCceeeeccccceecCCcc
Confidence 85 33344443 55788888876666667888899999998653
No 107
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.92 E-value=1.5e-24 Score=208.63 Aligned_cols=246 Identities=20% Similarity=0.300 Sum_probs=210.6
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEEe
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs 85 (689)
.|.-|. .+|.|++||.|..+||+|+.||.|++|.+.+ +.+++.|. .|...|+|+.|+.|+..+++++
T Consensus 258 ~fMMmd-~aVlci~FSRDsEMlAsGsqDGkIKvWri~t-----------G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~s 325 (508)
T KOG0275|consen 258 NFMMMD-DAVLCISFSRDSEMLASGSQDGKIKVWRIET-----------GQCLRRFDRAHTKGVTCLSFSRDNSQILSAS 325 (508)
T ss_pred ceeecc-cceEEEeecccHHHhhccCcCCcEEEEEEec-----------chHHHHhhhhhccCeeEEEEccCcchhhccc
Confidence 455566 6999999999999999999999999999998 88999887 8999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|.+++|.-+.++ +.++.+++|...|+...|.+||.++++++.||+|++|+..+.+++.+++.
T Consensus 326 fD~tvRiHGlKSG-----------------K~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~ 388 (508)
T KOG0275|consen 326 FDQTVRIHGLKSG-----------------KCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKP 388 (508)
T ss_pred ccceEEEeccccc-----------------hhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccC
Confidence 9999999999998 67888899999999999999999999999999999999999999999875
Q ss_pred --CCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 166 --HSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 166 --h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
...+|..+-..|.+ ..++++....+|.|-++. ++.++.+.....
T Consensus 389 ~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkR-------------------------------- 435 (508)
T KOG0275|consen 389 LGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKR-------------------------------- 435 (508)
T ss_pred CCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCc--------------------------------
Confidence 34578888877744 678888888899998873 444443322111
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
..+...++..+|.+ .++.+.+.|+.++.|.
T Consensus 436 -----------------EgGdFi~~~lSpkG---------------------------------ewiYcigED~vlYCF~ 465 (508)
T KOG0275|consen 436 -----------------EGGDFINAILSPKG---------------------------------EWIYCIGEDGVLYCFS 465 (508)
T ss_pred -----------------cCCceEEEEecCCC---------------------------------cEEEEEccCcEEEEEE
Confidence 13344556666765 8999999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+.+++....+. .|...|..++-+|..+.|++-++||.+++|.
T Consensus 466 ~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 466 VLSGKLERTLP-VHEKDVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred eecCceeeeee-cccccccccccCcccchhhhhcccchhhhcC
Confidence 99998877765 5788899999999999999999999999995
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.92 E-value=1.3e-22 Score=217.30 Aligned_cols=368 Identities=18% Similarity=0.265 Sum_probs=261.3
Q ss_pred eEEEEEEcCCC--CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGA--LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg--~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.|+++. ||.- +.++.|+.+|.+.|||+.+ ++.+++++++...|+++.-+|-=..+|.|..+|+|.|
T Consensus 161 ~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt-----------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vii 228 (910)
T KOG1539|consen 161 FITALL-HPSTYLNKIVVGSSQGRLQLWNVRT-----------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVII 228 (910)
T ss_pred ceeeEe-cchhheeeEEEeecCCcEEEEEecc-----------CcEEEEecccccceeEeccCCcceEEEEeccCceEEE
Confidence 366664 4543 6789999999999999998 8999999999999999999998889999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCe
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLR-GHSSLV 170 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~-~h~~~V 170 (689)
++++.+ +.+..++...+.|+.++|.-||+ .|++++..|.+.+||++..+.+..++ .|.+.|
T Consensus 229 fNlK~d-----------------kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv 291 (910)
T KOG1539|consen 229 FNLKFD-----------------KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSV 291 (910)
T ss_pred EEcccC-----------------cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCc
Confidence 999988 67788875469999999999998 67777778999999999988877766 798999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCc----ceeeccCcccccCCcccEEEEEEc-CCCCeEEEecCCCCCccccce
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWS----LAHRTDGHWAKSLGSTFFRRLGWS-PCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~----~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~~~~~~~~~~i 245 (689)
..+.|.|....+++++.|..+++|=.+++. .++.-.+|..+ ..++.|. .+|.++..+..+........+
T Consensus 292 ~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~P------p~~irfy~~~g~~ilsa~~Drt~r~fs~~ 365 (910)
T KOG1539|consen 292 TGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAP------PSCIRFYGSQGHFILSAKQDRTLRSFSVI 365 (910)
T ss_pred ccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCC------chheeeeccCcEEEEecccCcchhhhhhh
Confidence 999999999999999999999988665432 23333344333 4455555 566666666543321100000
Q ss_pred ee-----------cC-------------Cceeeee--------------ecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 246 LE-----------RG-------------EWAATFD--------------FLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 246 ~~-----------~~-------------~~~~~~~--------------l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
-+ .. ....... +..|.+...+-.|+-... ..+.....
T Consensus 366 ~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~-----~~G~~~L~ 440 (910)
T KOG1539|consen 366 SESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK-----TSGRHVLD 440 (910)
T ss_pred HHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc-----ccccEEec
Confidence 00 00 0000000 112222222233322110 00000000
Q ss_pred cccc-cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe--cccCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 288 PVGW-TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA--KHFFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 288 ~~~~-~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~--~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
+... ...........++-|++.+.|...|.|.+|++.+|.....+ ...|..+|+.++...-++.+++++.+|.+++|
T Consensus 441 ~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw 520 (910)
T KOG1539|consen 441 PKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFW 520 (910)
T ss_pred CccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEE
Confidence 0000 02223333445677899999999999999999999887776 34689999999999999999999999999999
Q ss_pred EeeccccccccC-----------------------------hHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 365 HFEVKELGHRLS-----------------------------DAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 365 d~~~~~l~~~l~-----------------------------~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
|+..+.+...+. +....... ..+-+|.++|++++|||||++|++++.|++
T Consensus 521 ~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-R~f~gh~nritd~~FS~DgrWlisasmD~t 599 (910)
T KOG1539|consen 521 DFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-REFWGHGNRITDMTFSPDGRWLISASMDST 599 (910)
T ss_pred ecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-HHhhccccceeeeEeCCCCcEEEEeecCCc
Confidence 999877333211 11112233 334458899999999999999999999999
Q ss_pred eeeeeeeccc
Q 040062 416 TTKKVVSDVQ 425 (689)
Q Consensus 416 v~~~~~~~~~ 425 (689)
| +.+++++
T Consensus 600 I--r~wDlpt 607 (910)
T KOG1539|consen 600 I--RTWDLPT 607 (910)
T ss_pred E--EEEeccC
Confidence 9 8777665
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.3e-24 Score=212.38 Aligned_cols=286 Identities=13% Similarity=0.153 Sum_probs=225.6
Q ss_pred eeeeeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
..+..|.+|...|.|++=+|+. ..+++|+.||.|+|||+... .+...+..|.+.|..|++..
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR-----------------~~~~~f~AH~G~V~Gi~v~~ 119 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR-----------------ECIRTFKAHEGLVRGICVTQ 119 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhh-----------------hhhheeecccCceeeEEecc
Confidence 3466779999999999999976 78999999999999999876 67888999999999999985
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
..+++++.|.+|+.|-+.- ..+.++. ..+.+.+|.-+..+..++|++++ |.|||.....++..+.-....
T Consensus 120 --~~~~tvgdDKtvK~wk~~~-~p~~til-g~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~Pv~smswG~Dt---- 189 (433)
T KOG0268|consen 120 --TSFFTVGDDKTVKQWKIDG-PPLHTIL-GKSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDNPVSSMSWGADS---- 189 (433)
T ss_pred --cceEEecCCcceeeeeccC-Ccceeee-ccccccccccccccccccccCce--eeecccccCCccceeecCCCc----
Confidence 6788999999999999854 4556655 35667778777778889999874 999999888888777655444
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
+.++.|+|-...|+++++. ...+.+++........... -...-..++|+|..
T Consensus 190 --i~svkfNpvETsILas~~s---DrsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPea---------------------- 241 (433)
T KOG0268|consen 190 --ISSVKFNPVETSILASCAS---DRSIVLYDLRQASPLKKVI-LTMRTNTICWNPEA---------------------- 241 (433)
T ss_pred --eeEEecCCCcchheeeecc---CCceEEEecccCCccceee-eeccccceecCccc----------------------
Confidence 8999999998877776643 3455566665543332221 12344668888865
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
..+++|++|..++.||++...........|...|.++.|||.|+-+++||.|.+|+||..+.+......
T Consensus 242 -----------fnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiY 310 (433)
T KOG0268|consen 242 -----------FNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIY 310 (433)
T ss_pred -----------cceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhh
Confidence 578889999999999999876555555678999999999999999999999999999998866433211
Q ss_pred ChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 376 SDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 376 ~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
. ..+. ..|.++.||.|.+++++||+|+.| +++.
T Consensus 311 h--------tkRM----q~V~~Vk~S~Dskyi~SGSdd~nv--RlWk 343 (433)
T KOG0268|consen 311 H--------TKRM----QHVFCVKYSMDSKYIISGSDDGNV--RLWK 343 (433)
T ss_pred h--------Hhhh----heeeEEEEeccccEEEecCCCcce--eeee
Confidence 1 1111 259999999999999999999999 7764
No 110
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.92 E-value=8.9e-22 Score=204.55 Aligned_cols=275 Identities=14% Similarity=0.143 Sum_probs=198.4
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCCccc
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~Dg~I~iwdl~~~~~~~~ 103 (689)
+..+++++.|+.|++||+.+ .+.+..+..|. .+.+++|+|+++++ ++++.++.|++||+.++
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t-----------~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~----- 63 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTAT-----------LEVTRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATG----- 63 (300)
T ss_pred CcEEEEecCCCEEEEEECCC-----------CceEEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCC-----
Confidence 35788999999999999986 56677776554 46789999999976 56778899999999876
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
+....+..+. .+..++|+|+++.++++ +.|+.|++||+.+.+.+..+.. ...+.+++|+|+++++
T Consensus 64 ------------~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l 129 (300)
T TIGR03866 64 ------------EVIGTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIV 129 (300)
T ss_pred ------------cEEEeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEE
Confidence 3444444433 35678999999977654 5689999999999888777763 3456889999999999
Q ss_pred EEEeCCC-eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC
Q 040062 183 ASQSDDK-TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN 261 (689)
Q Consensus 183 as~s~Dg-~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~ 261 (689)
++++.++ .+.+||.++++....+... .....+.|+++|+++++.+.. ...+.+|+.........+..+.
T Consensus 130 ~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~s~dg~~l~~~~~~---~~~v~i~d~~~~~~~~~~~~~~ 199 (300)
T TIGR03866 130 VNTSETTNMAHFIDTKTYEIVDNVLVD-------QRPRFAEFTADGKELWVSSEI---GGTVSVIDVATRKVIKKITFEI 199 (300)
T ss_pred EEEecCCCeEEEEeCCCCeEEEEEEcC-------CCccEEEECCCCCEEEEEcCC---CCEEEEEEcCcceeeeeeeecc
Confidence 9988765 5677899887665543221 124678999999988765432 2346677776554433222111
Q ss_pred -----C--CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE-EEeCCCcEEEEeCCCCCceEEec
Q 040062 262 -----A--PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQDRTITVWTTASPRPLFVAK 333 (689)
Q Consensus 262 -----~--~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~Dg~I~iwd~~~~~~~~~~~ 333 (689)
. ....+.|+|++ ++++ +.+.++.|.+||+++++.+..+.
T Consensus 200 ~~~~~~~~~~~~i~~s~dg---------------------------------~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 200 PGVHPEAVQPVGIKLTKDG---------------------------------KTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred cccccccCCccceEECCCC---------------------------------CEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 1 12235555554 5544 34556789999999887765543
Q ss_pred ccCCCCeEEEEEccCCCeEEEE-eCCCcEEEEEeecccccccc
Q 040062 334 HFFTQSVVDLSWSPDGYSLFAC-SLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 334 ~~h~~~V~~l~~spdg~~L~sg-s~DG~I~vwd~~~~~l~~~l 375 (689)
+...+.+++|+|+|++|+++ ..+|.|++||+++++....+
T Consensus 247 --~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 247 --VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred --eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 24578999999999999886 46999999999998876544
No 111
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.91 E-value=9.2e-23 Score=223.10 Aligned_cols=249 Identities=22% Similarity=0.365 Sum_probs=217.8
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
......+|.| .|.+++|..-+.+|++|+.|.++++||+.+ +.+.+.+.+|.+.|.|+... ..++++
T Consensus 241 i~~~l~GH~g-~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-----------g~C~~~l~gh~stv~~~~~~--~~~~~s 306 (537)
T KOG0274|consen 241 ILTRLVGHFG-GVWGLAFPSGGDKLVSGSTDKTERVWDCST-----------GECTHSLQGHTSSVRCLTID--PFLLVS 306 (537)
T ss_pred EEeeccCCCC-CceeEEEecCCCEEEEEecCCcEEeEecCC-----------CcEEEEecCCCceEEEEEcc--CceEee
Confidence 3445789995 999999998888999999999999999987 99999999999999998885 457889
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
|+.|.+|++|++.++ ..+..+.+|...|.++..+ +.++++|+.|++|++||+.+++++..+
T Consensus 307 gs~D~tVkVW~v~n~-----------------~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl 367 (537)
T KOG0274|consen 307 GSRDNTVKVWDVTNG-----------------ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSL 367 (537)
T ss_pred ccCCceEEEEeccCc-----------------ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeee
Confidence 999999999999987 6888888899999999997 889999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW-SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.+|...|.++.+... ..+++|+.|++|++||+++. +++..+..+..- + -.....+++|+.+..+ ..
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~------v--~~l~~~~~~Lvs~~aD----~~ 434 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL------V--SSLLLRDNFLVSSSAD----GT 434 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc------c--cccccccceeEecccc----cc
Confidence 999999999988765 89999999999999999999 898888877543 2 3345567888887764 47
Q ss_pred cceeecCCceeeeeecC-CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 243 APVLERGEWAATFDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
+.+|+..+..+...+.+ |...|..+++. + ..+++++.|+.+++|
T Consensus 435 Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~-~----------------------------------~~il~s~~~~~~~l~ 479 (537)
T KOG0274|consen 435 IKLWDAEEGECLRTLEGRHVGGVSALALG-K----------------------------------EEILCSSDDGSVKLW 479 (537)
T ss_pred EEEeecccCceeeeeccCCcccEEEeecC-c----------------------------------ceEEEEecCCeeEEE
Confidence 88999988888888888 67888888775 1 579999999999999
Q ss_pred eCCCCCceEEec
Q 040062 322 TTASPRPLFVAK 333 (689)
Q Consensus 322 d~~~~~~~~~~~ 333 (689)
|++++.....+.
T Consensus 480 dl~~~~~~~~l~ 491 (537)
T KOG0274|consen 480 DLRSGTLIRTLL 491 (537)
T ss_pred ecccCchhhhhh
Confidence 999998887653
No 112
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.91 E-value=4.8e-22 Score=201.86 Aligned_cols=331 Identities=18% Similarity=0.262 Sum_probs=240.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
+.|....|+|.+.-|+.....+.+..|+.+... -.+....+..+ ...|.|++|.++|+ +++|..+|.|.|
T Consensus 201 e~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~--------l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~I 271 (626)
T KOG2106|consen 201 EVVFLATFHPTDPNLIITCGKGHLYFWTLRGGS--------LVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILI 271 (626)
T ss_pred ceEEEEEeccCCCcEEEEeCCceEEEEEccCCc--------eEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEE
Confidence 468899999977544444445899999987511 12222333333 36799999999997 779999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE------------
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT------------ 160 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~------------ 160 (689)
|+..+. +..+....|.+.|.+|+...+|.+| +|+.|..|..||-. .+.+
T Consensus 272 w~~~~~-----------------~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~~elPe~~G~i 332 (626)
T KOG2106|consen 272 WSKGTN-----------------RISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRETELPEQFGPI 332 (626)
T ss_pred EeCCCc-----------------eEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccc-ccccccccCchhcCCe
Confidence 998766 4555555999999999999988755 59999999999831 1100
Q ss_pred -----------------------------EEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 161 -----------------------------AVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 161 -----------------------------~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
....+|....+.++.+|+.+.|++++.|+.+++|+ ..+++......
T Consensus 333 Rtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~~--- 407 (626)
T KOG2106|consen 333 RTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKIIE--- 407 (626)
T ss_pred eEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEec---
Confidence 01246888899999999999999999999999999 44444333221
Q ss_pred cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
....++.|.|.| .++.+.. ...+.+++..+... ..+.-...++.+++|+|++
T Consensus 408 ----d~~~~~~fhpsg-~va~Gt~----~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G------------------ 459 (626)
T KOG2106|consen 408 ----DPAECADFHPSG-VVAVGTA----TGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDG------------------ 459 (626)
T ss_pred ----CceeEeeccCcc-eEEEeec----cceEEEEeccccee-EEEEecCCceEEEEEcCCC------------------
Confidence 127889999999 6666543 34455566555333 3333338899999999997
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC-CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP-RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.+||.|+.|+.|+||.+... +........+...|+.|.||+|+++|.+-+-|-.|..|.-....
T Consensus 460 ---------------~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~ 524 (626)
T KOG2106|consen 460 ---------------AFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECK 524 (626)
T ss_pred ---------------CEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCc
Confidence 89999999999999998754 44444444556899999999999999999999999999655444
Q ss_pred cccccChHHHHHHH-----HhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 371 LGHRLSDAELDELK-----RSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 371 l~~~l~~~~~~~~~-----~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
......+-++.... ...-+.+...|..++-+.+..+||+|.+.|.| +++.
T Consensus 525 ~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v--~lf~ 579 (626)
T KOG2106|consen 525 QITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKV--HLFS 579 (626)
T ss_pred ccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceE--EEEc
Confidence 44333332222110 01113455578889999999999999999999 6554
No 113
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.91 E-value=2.2e-22 Score=211.61 Aligned_cols=381 Identities=22% Similarity=0.294 Sum_probs=258.1
Q ss_pred EEEEEcCC-CC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC---CEEEEEeCCCeEE
Q 040062 17 FSIDVQPG-AL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG---RYIASGSDDQVIL 91 (689)
Q Consensus 17 ~si~~spd-g~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg---~~Lasgs~Dg~I~ 91 (689)
.|+++.++ +. .+|.|+.+..|.|+.-.. .....+..+.+|...|.+++|...+ -+|||++.|..|+
T Consensus 149 LcL~~~~~~~~~lla~Ggs~~~v~~~s~~~---------d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIR 219 (764)
T KOG1063|consen 149 LCLAALKNNKTFLLACGGSKFVVDLYSSSA---------DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIR 219 (764)
T ss_pred HHHhhhccCCcEEEEecCcceEEEEeccCC---------cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEE
Confidence 35555563 33 456667777888887653 1367889999999999999998744 3899999999999
Q ss_pred EEEcCCCCCcc----ccCCCCCCCcccceEE----------EEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 92 IHEKKPGSGTT----EFGSGEPPDIENWKVA----------MTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 92 iwdl~~~~~~~----~~~~~~~~~~~~~~~~----------~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~ 157 (689)
||.+....... ++......+...+... ..+.+|+..|.++.|+|.+..|++++.|.++.+|...+.
T Consensus 220 iW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~ 299 (764)
T KOG1063|consen 220 IWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDEN 299 (764)
T ss_pred EEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCc
Confidence 99987654211 1111111111111111 224499999999999999999999999999999987653
Q ss_pred --eEEEE-----EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC---CcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 158 --ICTAV-----LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD---WSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 158 --~~~~~-----l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
--+.. +.+......+.-|+|+++.+++-+.-|..++|...+ +.....+.+|... ++.+.|+|.|
T Consensus 300 tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~------V~dv~W~psG 373 (764)
T KOG1063|consen 300 TGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG------VKDVDWDPSG 373 (764)
T ss_pred cceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc------ceeeeecCCC
Confidence 22222 223345578889999999999999999999998332 3445556666555 8999999999
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc-------------------------
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ------------------------- 282 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~------------------------- 282 (689)
.+|++++.+...+...+--...+|.....-.-|...++|++|-+...++......
T Consensus 374 eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~ 453 (764)
T KOG1063|consen 374 EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFK 453 (764)
T ss_pred CEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCcccc
Confidence 9999998876554333321233344444445566677777776622111111000
Q ss_pred ----------------ccccccccccC-Ccc-------------------------------------------cccCcc
Q 040062 283 ----------------EVKAAPVGWTN-GTS-------------------------------------------KIGGKE 302 (689)
Q Consensus 283 ----------------~~~~~~~~~~~-~~~-------------------------------------------~~~~~~ 302 (689)
..+....+... +.. +.....
T Consensus 454 ~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~ 533 (764)
T KOG1063|consen 454 GSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAI 533 (764)
T ss_pred CchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEe
Confidence 00000000000 000 001112
Q ss_pred CCCCcEEEEEeCCC-----cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccCh
Q 040062 303 SQPYNVIAIGSQDR-----TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSD 377 (689)
Q Consensus 303 s~~~~~lasgs~Dg-----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~ 377 (689)
++.++++|+++... .|++|++.+-.....+. .|.-.|+.|+|||||++|++.|.|.++.+|..........
T Consensus 534 s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~-~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~--- 609 (764)
T KOG1063|consen 534 SPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELE-GHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEF--- 609 (764)
T ss_pred cCCCCEEeehhhhCCccceEEEEEeccchhhhheec-ccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhh---
Confidence 66788899888653 49999999888777655 6899999999999999999999999999999854433211
Q ss_pred HHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 378 AELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 378 ~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.......|..-|.++.|+||+.+++|+|.|++| +++..+
T Consensus 610 ------~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~V--kVW~~~ 648 (764)
T KOG1063|consen 610 ------RFACLKAHTRIIWDCSWSPDEKYFATASRDKKV--KVWEEP 648 (764)
T ss_pred ------hhccccccceEEEEcccCcccceeEEecCCceE--EEEecc
Confidence 012245688789999999999999999999999 777543
No 114
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.8e-22 Score=207.78 Aligned_cols=300 Identities=16% Similarity=0.198 Sum_probs=243.1
Q ss_pred CeeecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CCcEEEEEEcCCCC
Q 040062 1 MIAEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FGSVNCVRWAKHGR 79 (689)
Q Consensus 1 M~~~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~fspdg~ 79 (689)
|++..-+|+.-...+|.||+|+.+.+.||.+-.||.|.||++.. ..-+...+.++ .+.|-+++|++ +.
T Consensus 13 m~vhrcrf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~----------~w~~~~vi~g~~drsIE~L~W~e-~~ 81 (691)
T KOG2048|consen 13 MQVHRCRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN----------NWFLEPVIHGPEDRSIESLAWAE-GG 81 (691)
T ss_pred eEEEEEEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC----------CceeeEEEecCCCCceeeEEEcc-CC
Confidence 67777788877778999999999999999999999999999986 34555556555 46899999995 55
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
.|.|.+.+|.|.-||+.+. +....+....+.|++++.+|.+..++.|+.||.+..++...++.
T Consensus 82 RLFS~g~sg~i~EwDl~~l-----------------k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I 144 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDLHTL-----------------KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKI 144 (691)
T ss_pred eEEeecCCceEEEEecccC-----------------ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceE
Confidence 6888889999999999988 67777888889999999999999999999999888888887766
Q ss_pred EEE--EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc--cCCcccEEEEEEcCCCCeEEEecC
Q 040062 160 TAV--LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK--SLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 160 ~~~--l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
... +....+.|.+++|+|++..|++|+.||.|++||...+............ ......+.++.|..++..+..-+
T Consensus 145 ~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS- 223 (691)
T KOG2048|consen 145 TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDS- 223 (691)
T ss_pred EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecC-
Confidence 543 3335689999999999999999999999999999988877743332222 12345688888887766554432
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD 315 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D 315 (689)
.+.+.+|+.........+..|.+.|.+++.+++. +.+++++-|
T Consensus 224 ----~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~---------------------------------d~vfsaGvd 266 (691)
T KOG2048|consen 224 ----AGTVTFWDSIFGTLIQSHSCHDADVLALAVADNE---------------------------------DRVFSAGVD 266 (691)
T ss_pred ----CceEEEEcccCcchhhhhhhhhcceeEEEEcCCC---------------------------------CeEEEccCC
Confidence 4778899998888888888999999999998886 899999999
Q ss_pred CcEEEEeCCCCCc---eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 316 RTITVWTTASPRP---LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 316 g~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+.|..|...+... .......|...|.+++..++ .|++|+.|..+.+-....
T Consensus 267 ~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 267 PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE 320 (691)
T ss_pred CceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence 9999998877654 33445567888999998876 788888888877755443
No 115
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.1e-23 Score=223.67 Aligned_cols=296 Identities=18% Similarity=0.317 Sum_probs=228.4
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec---CCCCcEEEEEEcC-CCCEEEE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR---DHFGSVNCVRWAK-HGRYIAS 83 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~v~fsp-dg~~Las 83 (689)
|.-|-...+.+|...++-..|+.++. ..+.||.+..... ..++...+. .-.-.+..|.|+. +.++||+
T Consensus 34 ~~~~~k~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~-------~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT 105 (839)
T KOG0269|consen 34 MNCKLKAKANAISVNRDINQIVVAGR-SLLKLYAINPNDF-------SEKCNHRFKTKQNKFYSAADVKWGQLYSNLIAT 105 (839)
T ss_pred eeeecccccceEeecCCcceeEEecc-cceeeEeeCcccC-------Ccceeeecccccceeeehhhcccccchhhhhee
Confidence 44444467889999999999998887 5788998875221 112222211 1123466788885 5779999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
++..|.|.+||+...... +.+..|..|+..+.+++|++.. .+|++|+.||.|++||++...-..+
T Consensus 106 ~s~nG~i~vWdlnk~~rn--------------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t 171 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRN--------------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST 171 (839)
T ss_pred ecCCCcEEEEecCccccc--------------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence 999999999999862100 4556788899999999999865 5899999999999999999999999
Q ss_pred EecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 163 LRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 163 l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
+++....|+.+.|+| .+.+|+++.+.|.+++||++....
T Consensus 172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r---------------------------------------- 211 (839)
T KOG0269|consen 172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR---------------------------------------- 211 (839)
T ss_pred ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh----------------------------------------
Confidence 999889999999999 568899999999999999975321
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
+.+.+..|.++|.++.|+|++ .+||+||.|+.|+||
T Consensus 212 -----------~~~k~~AH~GpV~c~nwhPnr---------------------------------~~lATGGRDK~vkiW 247 (839)
T KOG0269|consen 212 -----------CEKKLTAHNGPVLCLNWHPNR---------------------------------EWLATGGRDKMVKIW 247 (839)
T ss_pred -----------HHHHhhcccCceEEEeecCCC---------------------------------ceeeecCCCccEEEE
Confidence 112356799999999999987 899999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCe-EEEEe--CCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeee
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYS-LFACS--LDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANL 398 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs--~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l 398 (689)
|+.+.+......-....+|..+.|-|+.++ |++++ .|-.|+|||+.-.-+.. ..|..|+..++.+
T Consensus 248 d~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~------------~t~~eH~~~vt~i 315 (839)
T KOG0269|consen 248 DMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPY------------ATFLEHTDSVTGI 315 (839)
T ss_pred eccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccc------------eeeeccCccccce
Confidence 998765433222223678999999998765 56655 38899999997544332 5566788889999
Q ss_pred ecC-chhhhhHhhccccceeeeee
Q 040062 399 AET-PAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 399 ~~S-pdg~~Las~s~DG~v~~~~~ 421 (689)
+|- .|-..|.+++.||+|.....
T Consensus 316 ~W~~~d~~~l~s~sKD~tv~qh~~ 339 (839)
T KOG0269|consen 316 AWDSGDRINLWSCSKDGTVLQHLF 339 (839)
T ss_pred eccCCCceeeEeecCccHHHHhhh
Confidence 995 47788899999999944433
No 116
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=1.2e-22 Score=204.59 Aligned_cols=286 Identities=16% Similarity=0.171 Sum_probs=228.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIH 93 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iw 93 (689)
.|+||.|||.-..|++|+.|+.++||.++. .....++.+.-...+|.+.+|.|+|+ .+++++....++.|
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDG---------k~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDG---------KVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecC---------ccChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 699999999999999999999999999975 22346677766778999999999999 89999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
|+.+.+. ..+..+.++. ..+.....++++++|+..+..|.|.+....+++.+..++ -.+.|..
T Consensus 286 Dle~ak~---------------~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~ 349 (514)
T KOG2055|consen 286 DLETAKV---------------TKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSD 349 (514)
T ss_pred ecccccc---------------ccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheee-eccEEee
Confidence 9988642 2333344444 456778889999999999999999999999999999998 6788999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC---
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG--- 249 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~--- 249 (689)
++|+.+++.|+.++.+|.|.+||++...+++.+.... ...-.+++.|+++.++++++. ...+.+++..
T Consensus 350 ~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G-----~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~ 420 (514)
T KOG2055|consen 350 FTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDG-----SVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCF 420 (514)
T ss_pred EEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecC-----ccceeeeeecCCCceEEeccC----cceEEEeccchhh
Confidence 9999999999999999999999999998888776432 233578899999999999865 3444555532
Q ss_pred ---CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC--CCcEEEEeCC
Q 040062 250 ---EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ--DRTITVWTTA 324 (689)
Q Consensus 250 ---~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~--Dg~I~iwd~~ 324 (689)
..+....+..-...|..+.|+++. .+||.++. +..+++-.+.
T Consensus 421 ~s~~PkPik~~dNLtt~Itsl~Fn~d~---------------------------------qiLAiaS~~~knalrLVHvP 467 (514)
T KOG2055|consen 421 ASTNPKPIKTVDNLTTAITSLQFNHDA---------------------------------QILAIASRVKKNALRLVHVP 467 (514)
T ss_pred ccCCCCchhhhhhhheeeeeeeeCcch---------------------------------hhhhhhhhccccceEEEecc
Confidence 233444455556788999999986 66666664 5778888776
Q ss_pred CCCceEEeccc--CCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 325 SPRPLFVAKHF--FTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 325 ~~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+......+... .-+.|+||+|||.|-+|+.|..+|.+.+|.+.
T Consensus 468 S~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 468 SCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 65444433322 12469999999999999999999999999874
No 117
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=1.1e-22 Score=194.89 Aligned_cols=272 Identities=17% Similarity=0.193 Sum_probs=195.2
Q ss_pred CCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 64 DHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 64 ~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
.....|.+|+||| ...+|+.++.|++||+|+++.... ..-+....|.++|.+++|+.||..+++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~---------------~~~ka~~~~~~PvL~v~WsddgskVf~ 89 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ---------------LVPKAQQSHDGPVLDVCWSDDGSKVFS 89 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc---------------ccchhhhccCCCeEEEEEccCCceEEe
Confidence 4567899999999 555677999999999999987421 122445569999999999999999999
Q ss_pred EeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCC--EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGS--FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~--~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
|+.|+.+++||+.++ .+..+-.|..+|..+.|-+... .|+|||.|.+|+.||++...++.++..+.. +.+
T Consensus 90 g~~Dk~~k~wDL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-------vYa 161 (347)
T KOG0647|consen 90 GGCDKQAKLWDLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-------VYA 161 (347)
T ss_pred eccCCceEEEEccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-------eee
Confidence 999999999999999 4555666999999999988665 899999999999999999888888776533 122
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCceeeeee--cCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF--LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l--~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
+ +-.-.+++++.+. ..+.+++......++.. ..-.-.+.+++...+.
T Consensus 162 ~--Dv~~pm~vVata~----r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~------------------------- 210 (347)
T KOG0647|consen 162 A--DVLYPMAVVATAE----RHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDK------------------------- 210 (347)
T ss_pred h--hccCceeEEEecC----CcEEEEEcCCCcchhhhhcCcccceeeEEEEEecC-------------------------
Confidence 1 1112223332221 22223333222111111 0112345666665554
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCC--CceEEecccCC---------CCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASP--RPLFVAKHFFT---------QSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~--~~~~~~~~~h~---------~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+..+.|+-+|.+.|..+..+ +.-+.++. |. -.|++++|+|.-..|++++.||++.+||-+
T Consensus 211 --------~~~alGsiEGrv~iq~id~~~~~~nFtFkC-HR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkd 281 (347)
T KOG0647|consen 211 --------DGFALGSIEGRVAIQYIDDPNPKDNFTFKC-HRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKD 281 (347)
T ss_pred --------CceEeeeecceEEEEecCCCCccCceeEEE-eccCCCCCCceEEecceEeecccceEEEecCCceEEEecch
Confidence 45599999999999988876 33344432 22 257899999999999999999999999966
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
....+ ..+..|...|++..|+.+|.++|.+.
T Consensus 282 ar~kL-------------k~s~~~~qpItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 282 ARTKL-------------KTSETHPQPITCCSFNRNGSIFAYAL 312 (347)
T ss_pred hhhhh-------------hccCcCCCccceeEecCCCCEEEEEe
Confidence 53322 22334667899999999999998653
No 118
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=1.5e-21 Score=179.46 Aligned_cols=251 Identities=24% Similarity=0.337 Sum_probs=195.0
Q ss_pred ecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC----CCCEEEEEe-
Q 040062 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK----HGRYIASGS- 85 (689)
Q Consensus 11 H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp----dg~~Lasgs- 85 (689)
|+...|+|.+|+|+|++||+|+.|.+|++.-+....... ...-..|.-|.+.|..++|-. .|.+|++++
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga 160 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNA------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA 160 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccc------cCcceeeeecCCceeeeEEecCCCcCceEEEecCC
Confidence 444699999999999999999999999998776521111 122234667999999999975 356777765
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|..|++-|...+ +..+.+.+|++.|.++ ++-++-++++|+.|.+|++||++-..++..+..
T Consensus 161 gdc~iy~tdc~~g-----------------~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~ 222 (350)
T KOG0641|consen 161 GDCKIYITDCGRG-----------------QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDN 222 (350)
T ss_pred CcceEEEeecCCC-----------------CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccC
Confidence 4677888787777 5677888999999987 344688999999999999999998888877642
Q ss_pred -------CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 166 -------HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 166 -------h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
..+.|.+++.+|.|++|++|-.|....+||++.+..++.+..+... |+++.|+|...|+++++-+..
T Consensus 223 ~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad------ir~vrfsp~a~yllt~syd~~ 296 (350)
T KOG0641|consen 223 DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD------IRCVRFSPGAHYLLTCSYDMK 296 (350)
T ss_pred cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc------eeEEEeCCCceEEEEecccce
Confidence 2367999999999999999999999999999999999999877554 999999999999999876554
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTI 318 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I 318 (689)
....-..-+............|...+..+.|+|.. --+++.+.|.++
T Consensus 297 ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d---------------------------------~sfisssadkt~ 343 (350)
T KOG0641|consen 297 IKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQD---------------------------------FSFISSSADKTA 343 (350)
T ss_pred EEEeecccchhhcCceEEEEeccCceEEEEecCcc---------------------------------ceeeeccCcceE
Confidence 33222111222223334455688888888888875 457788899999
Q ss_pred EEEeCC
Q 040062 319 TVWTTA 324 (689)
Q Consensus 319 ~iwd~~ 324 (689)
.+|-+.
T Consensus 344 tlwa~~ 349 (350)
T KOG0641|consen 344 TLWALN 349 (350)
T ss_pred EEeccC
Confidence 999764
No 119
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=5.1e-22 Score=190.74 Aligned_cols=268 Identities=22% Similarity=0.320 Sum_probs=202.0
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--CCCEE
Q 040062 63 RDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--DDSIL 140 (689)
Q Consensus 63 ~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~L 140 (689)
.+|..-|+|+.|.+.|+.+|+|+.|++|+|||.+.. ..+|.+....+.|.+.|..+.|.+ -|+.+
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~-------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSD-------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCC-------------CCceEEeeeEEecCCcEEEEEecCccccceE
Confidence 478899999999999999999999999999998553 467899999999999999999975 38899
Q ss_pred EEEeCCCeEEEEEcC---------CCeEEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCC------Cccee
Q 040062 141 ASGSLDNTIHIWNMS---------TGICTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSD------WSLAH 203 (689)
Q Consensus 141 asgs~Dg~I~vwd~~---------~~~~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~------~~~~~ 203 (689)
|+++.|+++.||.-. ......++....+.|+.+.|.|. |-.|++++.||.||||+.-+ +.+..
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~ 156 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQH 156 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhh
Confidence 999999999999752 12345566677889999999994 67899999999999998643 22222
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
+++.... ....+..+..|+.|++..+
T Consensus 157 Ei~~~~~---------------------------------------------pp~~~~~~~~CvsWn~sr~--------- 182 (361)
T KOG2445|consen 157 EIQNVID---------------------------------------------PPGKNKQPCFCVSWNPSRM--------- 182 (361)
T ss_pred hhhhccC---------------------------------------------CcccccCcceEEeeccccc---------
Confidence 2221000 1113456677888887642
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCC-----CcEEEEeCCCCC-c---eEEecccCCCCeEEEEEccC----CC
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD-----RTITVWTTASPR-P---LFVAKHFFTQSVVDLSWSPD----GY 350 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D-----g~I~iwd~~~~~-~---~~~~~~~h~~~V~~l~~spd----g~ 350 (689)
...+||.|+.+ +.++||...... . +..+. .|..+|++++|.|+ -.
T Consensus 183 ---------------------~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 183 ---------------------HEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ---------------------cCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeeeccccCCcee
Confidence 22678888776 578899776543 2 22333 57899999999996 35
Q ss_pred eEEEEeCCCcEEEEEeeccc-------cccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 351 SLFACSLDGTVANFHFEVKE-------LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 351 ~L~sgs~DG~I~vwd~~~~~-------l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
+||+++.|| |+||++.... ........+........+++|.+.|..+.|+--|..|++.++||.| +++.
T Consensus 241 ~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~V--RLWk 316 (361)
T KOG2445|consen 241 LLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCV--RLWK 316 (361)
T ss_pred eEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCcee--eehh
Confidence 799999999 9999998522 2222222222222335578899999999999999999999999999 6543
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=201.46 Aligned_cols=246 Identities=19% Similarity=0.291 Sum_probs=200.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.+|.|+.-+|+|.+|+.|+..|.|++|.+.+ +.++..+..|...|+|+.|+.||.+|++|+.||.|.+|
T Consensus 82 g~v~al~s~n~G~~l~ag~i~g~lYlWelss-----------G~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW 150 (476)
T KOG0646|consen 82 GPVHALASSNLGYFLLAGTISGNLYLWELSS-----------GILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVW 150 (476)
T ss_pred cceeeeecCCCceEEEeecccCcEEEEEecc-----------ccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEE
Confidence 3799999999999999998999999999998 99999999999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD--SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
.+..--.. + +...-+....+..|+-.|+++...+.+ .+|++++.|.++++||+..+..+..+. ....+.
T Consensus 151 ~l~~lv~a--~------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~-fp~si~ 221 (476)
T KOG0646|consen 151 LLTDLVSA--D------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTIT-FPSSIK 221 (476)
T ss_pred EEEeeccc--c------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEe-cCCcce
Confidence 98643110 0 111236788899999999999987653 599999999999999999999988887 678899
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
+++.+|.+..++.|+++|.|.+.++........ . +..-.+++++.
T Consensus 222 av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~------~------v~~k~~~~~~t----------------------- 266 (476)
T KOG0646|consen 222 AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSA------G------VNQKGRHEENT----------------------- 266 (476)
T ss_pred eEEEcccccEEEecCCcceEEeeehhcCCcccc------c------ccccccccccc-----------------------
Confidence 999999999999999999999998855332100 0 11111122221
Q ss_pred eeeeeecCCCC--CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 040062 252 AATFDFLGHNA--PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL 329 (689)
Q Consensus 252 ~~~~~l~~h~~--~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~ 329 (689)
....+.||.+ .|+|++.+-++ .+|++|+.||.++|||+.+.+++
T Consensus 267 -~~~~~~Gh~~~~~ITcLais~Dg---------------------------------tlLlSGd~dg~VcvWdi~S~Q~i 312 (476)
T KOG0646|consen 267 -QINVLVGHENESAITCLAISTDG---------------------------------TLLLSGDEDGKVCVWDIYSKQCI 312 (476)
T ss_pred -eeeeeccccCCcceeEEEEecCc---------------------------------cEEEeeCCCCCEEEEecchHHHH
Confidence 2224667877 99999998876 89999999999999999999999
Q ss_pred EEecccCCCCeEEEEEccCC
Q 040062 330 FVAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 330 ~~~~~~h~~~V~~l~~spdg 349 (689)
+.+.. ..++|+.+.+.|-.
T Consensus 313 Rtl~~-~kgpVtnL~i~~~~ 331 (476)
T KOG0646|consen 313 RTLQT-SKGPVTNLQINPLE 331 (476)
T ss_pred HHHhh-hccccceeEeeccc
Confidence 88764 37789999986643
No 121
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.90 E-value=9.9e-22 Score=206.67 Aligned_cols=347 Identities=18% Similarity=0.212 Sum_probs=258.5
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+|+ +.|+++.|+|.+..|++++.|.++.||.-........ ..-.+-.+.+..+.-...-|+|++..+++-+.-|
T Consensus 264 ~GHe-DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv----~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~G 338 (764)
T KOG1063|consen 264 MGHE-DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWV----DVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTG 338 (764)
T ss_pred cCcc-cceEEEEEccchhhheecccCcceEEEecCCccceEE----EEEEeecccccccceeeEEEcCCCCEEEEecccC
Confidence 3899 7999999999999999999999999998765110000 0112223334456688999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC----CeEEEEEe
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST----GICTAVLR 164 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~----~~~~~~l~ 164 (689)
-.++|... +...|.....+.+|...|++++|+|.|.+|++++.|.+-++|-.-. ...+..-+
T Consensus 339 g~hlWkt~--------------d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ 404 (764)
T KOG1063|consen 339 GFHLWKTK--------------DKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ 404 (764)
T ss_pred cEEEEecc--------------CccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc
Confidence 99999822 3467788888999999999999999999999999999999987541 12233334
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC----------C----------------------ccee---eccCcc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD----------W----------------------SLAH---RTDGHW 209 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~----------~----------------------~~~~---~~~~~~ 209 (689)
-|...++|++|-+....|++|.+...+|+|+... + +... +..+..
T Consensus 405 iHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~ 484 (764)
T KOG1063|consen 405 IHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE 484 (764)
T ss_pred cccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccc
Confidence 5888899999988666788888888999998510 0 0000 000000
Q ss_pred ----------------------------------ccc-CCcccEEEEEEcCCCCeEEEecCCCC-CccccceeecCCcee
Q 040062 210 ----------------------------------AKS-LGSTFFRRLGWSPCGHFITTTHGFQK-PRHSAPVLERGEWAA 253 (689)
Q Consensus 210 ----------------------------------~~~-~~~~~i~~l~~spdg~~l~~~~~~~~-~~~~~~i~~~~~~~~ 253 (689)
.+. .....+.+++.+|+++.+++++.... ....+.+|+...|..
T Consensus 485 ~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~ 564 (764)
T KOG1063|consen 485 AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ 564 (764)
T ss_pred cceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh
Confidence 000 00123789999999999999876543 456678999999999
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce---E
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL---F 330 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~---~ 330 (689)
...+.+|.-.|+.++|+|++ ++|++.+.|+++.+|........ +
T Consensus 565 ~~~L~~HsLTVT~l~FSpdg---------------------------------~~LLsvsRDRt~sl~~~~~~~~~e~~f 611 (764)
T KOG1063|consen 565 VQELEGHSLTVTRLAFSPDG---------------------------------RYLLSVSRDRTVSLYEVQEDIKDEFRF 611 (764)
T ss_pred hheecccceEEEEEEECCCC---------------------------------cEEEEeecCceEEeeeeecccchhhhh
Confidence 99999999999999999997 89999999999999987543222 2
Q ss_pred EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc----hh-h
Q 040062 331 VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP----AQ-L 405 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp----dg-~ 405 (689)
.....|..-|.+..|+|++.+++++|.|.+|+||....... ..+. +...-.+...|+.+++.| +. -
T Consensus 612 a~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d-~~i~--------~~a~~~~~~aVTAv~~~~~~~~e~~~ 682 (764)
T KOG1063|consen 612 ACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRD-KYIS--------RFACLKFSLAVTAVAYLPVDHNEKGD 682 (764)
T ss_pred ccccccceEEEEcccCcccceeEEecCCceEEEEeccCchh-hhhh--------hhchhccCCceeeEEeeccccccccc
Confidence 22456888999999999999999999999999999876521 1111 011112445688888765 22 3
Q ss_pred hhHhhccccce
Q 040062 406 LLEAASAKETT 416 (689)
Q Consensus 406 ~Las~s~DG~v 416 (689)
.++.|-..|.+
T Consensus 683 ~vavGle~GeI 693 (764)
T KOG1063|consen 683 VVAVGLEKGEI 693 (764)
T ss_pred eEEEEecccEE
Confidence 67788899998
No 122
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.90 E-value=3.4e-21 Score=195.70 Aligned_cols=334 Identities=16% Similarity=0.211 Sum_probs=243.4
Q ss_pred ecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 11 H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
++..-|.|++|.++|. ++||.++|.|.||+... .+..+....|.+.|.+++...+|.+|- |+.|+.|
T Consensus 244 ~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~-----------~~~~k~~~aH~ggv~~L~~lr~GtllS-GgKDRki 310 (626)
T KOG2106|consen 244 REKKFVLCVTFLENGD-VITGDSGGNILIWSKGT-----------NRISKQVHAHDGGVFSLCMLRDGTLLS-GGKDRKI 310 (626)
T ss_pred ccceEEEEEEEcCCCC-EEeecCCceEEEEeCCC-----------ceEEeEeeecCCceEEEEEecCccEee-cCccceE
Confidence 4445799999999996 67899999999999875 455555569999999999999997555 9999999
Q ss_pred EEEEcCCCCCccc------cCC------CCCC----Ccccc--------eEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 91 LIHEKKPGSGTTE------FGS------GEPP----DIENW--------KVAMTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 91 ~iwdl~~~~~~~~------~~~------~~~~----~~~~~--------~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
..||-. -+.... ++. +... ...+. .......+|....+.++.+|+...|++++.|
T Consensus 311 ~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqd 389 (626)
T KOG2106|consen 311 ILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQD 389 (626)
T ss_pred Eecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCc
Confidence 999932 111111 100 0000 00010 1233456799999999999999999999999
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
+.+++|+ ..+...... -..++.|+.|+|.| .++.|...|...+.|.++..++..-.. . ..+..+.|+|+
T Consensus 390 k~v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~------~~ls~v~ysp~ 458 (626)
T KOG2106|consen 390 KHVRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-N------EQLSVVRYSPD 458 (626)
T ss_pred ceEEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-C------CceEEEEEcCC
Confidence 9999999 334444333 56788999999999 999999999999999998665554433 2 23899999999
Q ss_pred CCeEEEecCCCCCcccccee--ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 227 GHFITTTHGFQKPRHSAPVL--ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~--~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
|.+|+.++.++ .++++ +.........-..|..+|+.+.|++++
T Consensus 459 G~~lAvgs~d~----~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds------------------------------- 503 (626)
T KOG2106|consen 459 GAFLAVGSHDN----HIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDS------------------------------- 503 (626)
T ss_pred CCEEEEecCCC----eEEEEEECCCCcEEEEeeeecCceeEEeeecCCC-------------------------------
Confidence 99999987644 33343 333333332233445899999998886
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceE-----------------EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLF-----------------VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~-----------------~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++|.+-+.|-.|..|....-.... ++-..+...|..++-+.+.++|++|.+.|.|++|...
T Consensus 504 --~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 504 --QFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred --ceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 889999999999999433221111 1112244567777888889999999999999999976
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
-.+..... +.|+.|.+.|.+++|..+..+|.+.+.|-+|
T Consensus 582 c~s~rA~~----------he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si 620 (626)
T KOG2106|consen 582 CSSPRAPS----------HEYGGHSSHVTNVAFLCKDSHLISTGKDTSI 620 (626)
T ss_pred cCCCcccc----------eeeccccceeEEEEEeeCCceEEecCCCceE
Confidence 54443222 7888999999999999888777776688776
No 123
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.2e-24 Score=223.04 Aligned_cols=239 Identities=24% Similarity=0.473 Sum_probs=211.2
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..+..|. ..|.|+..-..++.+++|+.|..+-+|.+.. +..+..|.+|...|-||.|+....+|++|+
T Consensus 22 ~~~~~hs-aav~~lk~~~s~r~~~~Gg~~~k~~L~~i~k-----------p~~i~S~~~hespIeSl~f~~~E~Llaags 89 (825)
T KOG0267|consen 22 REFVAHS-AAVGCLKIRKSSRSLVTGGEDEKVNLWAIGK-----------PNAITSLTGHESPIESLTFDTSERLLAAGS 89 (825)
T ss_pred hhhhhhh-hhhceeeeeccceeeccCCCceeeccccccC-----------CchhheeeccCCcceeeecCcchhhhcccc
Confidence 3556677 6899999877889999999999999999876 566667899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.+|+|++||++.. +.+++|.+|...+..+.|+|-+.|+++++.|..+.+||++...+...+.+
T Consensus 90 asgtiK~wDleeA-----------------k~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 90 ASGTIKVWDLEEA-----------------KIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS 152 (825)
T ss_pred cCCceeeeehhhh-----------------hhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecC
Confidence 9999999999987 67889999999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
|...|..+.|+|+|++++.+++|.+++|||+..+++...+.
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~--------------------------------------- 193 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFK--------------------------------------- 193 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeecccccccccccc---------------------------------------
Confidence 99999999999999999999999999999998877665544
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
.|.+.+..+.|+|.. -+++.|+.|+++++||+++
T Consensus 194 -------------~~e~~v~sle~hp~e---------------------------------~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 194 -------------SHEGKVQSLEFHPLE---------------------------------VLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred -------------cccccccccccCchh---------------------------------hhhccCCCCceeeeeccce
Confidence 466677777787775 5789999999999999998
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCC
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG 359 (689)
-+.+...... ...|.++.|+|++..+++|..+.
T Consensus 228 fe~I~s~~~~-~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 228 FEVISSGKPE-TDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eEEeeccCCc-cCCceeeeecCCceeeecCchhh
Confidence 7777665543 66799999999999988887553
No 124
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=2.9e-22 Score=209.29 Aligned_cols=311 Identities=18% Similarity=0.260 Sum_probs=225.5
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEE-cCCCCEEEEEeCCC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRW-AKHGRYIASGSDDQ 88 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~f-spdg~~Lasgs~Dg 88 (689)
.|. ..|..+...-+++.|++++.|-+|++|+..... .-+..++..|...|.|+++ .++..++|||+.|+
T Consensus 71 ~Hs-DWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~---------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 71 HHS-DWVNDIILCGNGKTLISASSDTTVKVWNAHKDN---------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred hhH-hHHhhHHhhcCCCceEEecCCceEEEeecccCc---------chhHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 355 689999999999999999999999999988611 2567888999999999999 78899999999999
Q ss_pred eEEEEEcCCCCC--ccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 89 VILIHEKKPGSG--TTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 89 ~I~iwdl~~~~~--~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|.+||+.++.. ...|.. .....+. ++...|.+++.++.+..+++|+..+.|++||.++.+.+..+++
T Consensus 141 ~IflWDin~~~~~l~~s~n~---------~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG 211 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNN---------VTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG 211 (735)
T ss_pred cEEEEEccCcchhhhhhccc---------cccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec
Confidence 999999998732 222211 1222333 8999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
|...|+++..+.||..+++++.||+|++||+....++.++..|... +..+..+|+=.++++++.++... .
T Consensus 212 HTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~------VWaL~~~~sf~~vYsG~rd~~i~----~ 281 (735)
T KOG0308|consen 212 HTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEG------VWALQSSPSFTHVYSGGRDGNIY----R 281 (735)
T ss_pred cccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCc------eEEEeeCCCcceEEecCCCCcEE----e
Confidence 9999999999999999999999999999999999999998877554 88888899989999887654321 2
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
-+.........+-....+|..+..+... +-+-++..|+.|+-|-..-
T Consensus 282 Tdl~n~~~~tlick~daPv~~l~~~~~~---------------------------------~~~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 282 TDLRNPAKSTLICKEDAPVLKLHLHEHD---------------------------------NSVWVTTTDSSIKRWKLEP 328 (735)
T ss_pred cccCCchhheEeecCCCchhhhhhcccc---------------------------------CCceeeeccccceecCCcc
Confidence 2222211111111122333333332111 1113333334444443221
Q ss_pred C-------------------------CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHH
Q 040062 326 P-------------------------RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAEL 380 (689)
Q Consensus 326 ~-------------------------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~ 380 (689)
. .+-.++.. ...|...+.-.|.+++++=...|.+.+||+-.++....+.....
T Consensus 329 ~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~G--g~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~~~~~~d~gk~~F 406 (735)
T KOG0308|consen 329 DIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPG--GAAIKKHAMLNDKRHVLTKDAKGNVALWDILACVKVEDFGKVDF 406 (735)
T ss_pred ccccccCCCCCcccccCCCccccccCCCceeccC--chhhhhhhhhcCcceEeeecCCCCEEEEEeeeeeehhhcccccH
Confidence 1 12222222 23455556667889999999999999999987776655554444
Q ss_pred HHHH
Q 040062 381 DELK 384 (689)
Q Consensus 381 ~~~~ 384 (689)
+...
T Consensus 407 E~iv 410 (735)
T KOG0308|consen 407 EEIV 410 (735)
T ss_pred HHHH
Confidence 4433
No 125
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=2.2e-22 Score=203.05 Aligned_cols=265 Identities=20% Similarity=0.360 Sum_probs=203.0
Q ss_pred cCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EE
Q 040062 63 RDHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-IL 140 (689)
Q Consensus 63 ~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~L 140 (689)
-.|.+.|+.+++-|. ...+|+.+..+.|.|||.......... ......-.++.+|...-..|+|++... +|
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------~~~~~Pdl~L~gH~~eg~glsWn~~~~g~L 193 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------SGECRPDLRLKGHEKEGYGLSWNRQQEGTL 193 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------cccCCCceEEEeecccccccccccccceeE
Confidence 459999999999995 457777888899999999875422111 012245568889999888999998755 89
Q ss_pred EEEeCCCeEEEEEcCCCe-------EEEEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 141 ASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 141 asgs~Dg~I~vwd~~~~~-------~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
++++.|+.|++||+.... ....+.+|...|..++|++- ..+|+++++|+.+.|||+|++ .....
T Consensus 194 ls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~--~~~~~------ 265 (422)
T KOG0264|consen 194 LSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN--TSKPS------ 265 (422)
T ss_pred eeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC--CCCCc------
Confidence 999999999999997532 35568899999999999994 568889999999999999863 11110
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
....+|.+.+.+++|+|..
T Consensus 266 ------------------------------------------~~~~ah~~~vn~~~fnp~~------------------- 284 (422)
T KOG0264|consen 266 ------------------------------------------HSVKAHSAEVNCVAFNPFN------------------- 284 (422)
T ss_pred ------------------------------------------ccccccCCceeEEEeCCCC-------------------
Confidence 0134689999999999984
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeecccc
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l 371 (689)
+.+||+|+.|++|.+||+++..........|...|.++.|||+. ..|++++.|+.+.|||+..-.-
T Consensus 285 -------------~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~ 351 (422)
T KOG0264|consen 285 -------------EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGE 351 (422)
T ss_pred -------------CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccccc
Confidence 57999999999999999998766555556799999999999964 5788899999999999975332
Q ss_pred ccccChH-HHHHHHHhccCCccCceeeeecCchhhh-hHhhccccce
Q 040062 372 GHRLSDA-ELDELKRSRYGDVRGRLANLAETPAQLL-LEAASAKETT 416 (689)
Q Consensus 372 ~~~l~~~-~~~~~~~~~~g~~~~~I~~l~~Spdg~~-Las~s~DG~v 416 (689)
.+..... +...-+.+.-|+|...|..+.|+|...+ |++.+.|+.+
T Consensus 352 eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~L 398 (422)
T KOG0264|consen 352 EQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNIL 398 (422)
T ss_pred ccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceE
Confidence 2221111 1111222556789999999999998755 5578888888
No 126
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.89 E-value=6.1e-23 Score=218.21 Aligned_cols=246 Identities=23% Similarity=0.393 Sum_probs=195.8
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~i 92 (689)
.+..+.|+. +.++|||++.+|.|.+||+... ...+++..|..|...|+++.|++ ...+|++|+.||+|++
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~--------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~ 160 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKS--------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKC 160 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCcc--------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEE
Confidence 455666764 5579999999999999999752 12567778999999999999998 5679999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCe
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTG-ICTAVLRGHSSLV 170 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~-~~~~~l~~h~~~V 170 (689)
||++.. +...++.+....|.++.|+|. +.+|+++...|.+++||++.. ++...+.+|.++|
T Consensus 161 ~DlR~~-----------------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV 223 (839)
T KOG0269|consen 161 WDLRSK-----------------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPV 223 (839)
T ss_pred Eeeecc-----------------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCce
Confidence 999987 345556667888999999995 669999999999999999874 5667788999999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
.|+.|+|++.+||||+.|+.|+|||+.+.........
T Consensus 224 ~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tI------------------------------------------- 260 (839)
T KOG0269|consen 224 LCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTI------------------------------------------- 260 (839)
T ss_pred EEEeecCCCceeeecCCCccEEEEeccCCCccceeEE-------------------------------------------
Confidence 9999999999999999999999999975332211110
Q ss_pred ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe--CCCcEEEEeCCCCCc
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS--QDRTITVWTTASPRP 328 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs--~Dg~I~iwd~~~~~~ 328 (689)
....+|..+.|-|.. ...|++++ .|-.|+|||++..-.
T Consensus 261 --------nTiapv~rVkWRP~~--------------------------------~~hLAtcsmv~dtsV~VWDvrRPYI 300 (839)
T KOG0269|consen 261 --------NTIAPVGRVKWRPAR--------------------------------SYHLATCSMVVDTSVHVWDVRRPYI 300 (839)
T ss_pred --------eecceeeeeeeccCc--------------------------------cchhhhhhccccceEEEEeeccccc
Confidence 113567778887774 14566655 377899999988766
Q ss_pred eEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEEEEeec
Q 040062 329 LFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~vwd~~~ 368 (689)
.......|...++.++|.. |-..|.+++.||+|..-.+++
T Consensus 301 P~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 301 PYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred cceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 6666667899999999965 566788999999887665554
No 127
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.89 E-value=2.7e-22 Score=210.52 Aligned_cols=245 Identities=17% Similarity=0.294 Sum_probs=208.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC---CCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK---HGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp---dg~~Lasgs~Dg~I 90 (689)
..|.|+++||+|++||+|..-|.++||++.. .+....+..|...|.|+.|+. ..++||+++.|+.|
T Consensus 460 ~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~-----------l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlI 528 (1080)
T KOG1408|consen 460 FGFRALAVSPDGQHLASGDRGGNLRVYDLQE-----------LEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLI 528 (1080)
T ss_pred cceEEEEECCCcceecccCccCceEEEEehh-----------hhhhhheecccceeEEEeecCchhhhHhhhhccCCceE
Confidence 3599999999999999999999999999987 778888999999999999995 45799999999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCeEEEEEecC--
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD--SILASGSLDNTIHIWNMSTGICTAVLRGH-- 166 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h-- 166 (689)
+|||+..+ +..+.++.+|...|+++.|..+| ..+++++.|..|.+--.+...-...+..|
T Consensus 529 HV~Dv~rn----------------y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~ 592 (1080)
T KOG1408|consen 529 HVYDVKRN----------------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ 592 (1080)
T ss_pred EEEecccc----------------cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence 99998754 46788999999999999998877 68999999987765433321111122212
Q ss_pred ---CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 167 ---SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 167 ---~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
...++.|+.+|..+++++++.|+.|+|||+.+++..+.+++..
T Consensus 593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~---------------------------------- 638 (1080)
T KOG1408|consen 593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSR---------------------------------- 638 (1080)
T ss_pred ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccc----------------------------------
Confidence 2568899999999999999999999999999999988877542
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
+|++....+...|.+ .||++.+.|.+|.++|.
T Consensus 639 ---------------~~eG~lIKv~lDPSg---------------------------------iY~atScsdktl~~~Df 670 (1080)
T KOG1408|consen 639 ---------------DHEGDLIKVILDPSG---------------------------------IYLATSCSDKTLCFVDF 670 (1080)
T ss_pred ---------------cCCCceEEEEECCCc---------------------------------cEEEEeecCCceEEEEe
Confidence 356666777777776 89999999999999999
Q ss_pred CCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
.+++++.... +|.+.|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 671 ~sgEcvA~m~-GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 671 VSGECVAQMT-GHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ccchhhhhhc-CcchheeeeeecccchhheeecCCceEEEEECch
Confidence 9999998776 5899999999999999999999999999999875
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.89 E-value=4.1e-21 Score=183.15 Aligned_cols=301 Identities=18% Similarity=0.249 Sum_probs=216.3
Q ss_pred ecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeee-----eecCCCCcEEEEEEcC-CCCEEEE
Q 040062 11 HEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA-----TLRDHFGSVNCVRWAK-HGRYIAS 83 (689)
Q Consensus 11 H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~-----~l~~h~~~V~~v~fsp-dg~~Las 83 (689)
|. ..|+++.+.+ .|+++++|+.||.|.+||++..... +...-..+..+ .-.+|.-.|..+.|-| |.-.|.+
T Consensus 42 Hg-GsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~-e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 42 HG-GSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDY-EASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred CC-CccceeeeccccceEEeecCCCccEEEEEeccccch-hhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 55 5999999998 6799999999999999999874311 11111111111 2246888999999999 6668999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD---DSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
++.|.++++||..+. +....|+ ....|..-+|||= ..++|+|..|-.|++-|+.+|.+.
T Consensus 120 sSFDhtlKVWDtnTl-----------------Q~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~s 181 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTL-----------------QEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFS 181 (397)
T ss_pred ccccceEEEeecccc-----------------eeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcce
Confidence 999999999999886 3444443 4556777788874 347778888889999999999999
Q ss_pred EEEecCCCCeEEEEEccCCCE-EEEEeCCCeEEEEECCCC-cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 161 AVLRGHSSLVKGVAWDPIGSF-IASQSDDKTVIIWRTSDW-SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~~-las~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
..+.+|.+.|.++.|+|...+ |++|+.||.|++||++.- .+...+..+..+.
T Consensus 182 H~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~-------------------------- 235 (397)
T KOG4283|consen 182 HTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR-------------------------- 235 (397)
T ss_pred eeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc--------------------------
Confidence 999999999999999998775 678999999999999753 3333333221110
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTI 318 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I 318 (689)
......-..|.+.+..++|+.++ .++++++.|..+
T Consensus 236 ------------~p~~~~n~ah~gkvngla~tSd~---------------------------------~~l~~~gtd~r~ 270 (397)
T KOG4283|consen 236 ------------PPILKTNTAHYGKVNGLAWTSDA---------------------------------RYLASCGTDDRI 270 (397)
T ss_pred ------------Cccccccccccceeeeeeecccc---------------------------------hhhhhccCccce
Confidence 00001234688999999998876 899999999999
Q ss_pred EEEeCCCCCceEEecc--cCCCC---eEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC
Q 040062 319 TVWTTASPRPLFVAKH--FFTQS---VVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG 393 (689)
Q Consensus 319 ~iwd~~~~~~~~~~~~--~h~~~---V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~ 393 (689)
++|+..+++....... .|.+. -..+. +-+...++---.|+.+.++++-+++....+. .|-.
T Consensus 271 r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~-------------~h~k 336 (397)
T KOG4283|consen 271 RVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLS-------------THLK 336 (397)
T ss_pred EEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeee-------------cccc
Confidence 9999998764322111 11111 01122 2233334444456888888888777664332 3445
Q ss_pred ceeeeecCchhhhhHhhccccce
Q 040062 394 RLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 394 ~I~~l~~Spdg~~Las~s~DG~v 416 (689)
+|.+.+|-|+=+.+.+++.|+.+
T Consensus 337 ~i~c~~~~~~fq~~~tg~~d~ni 359 (397)
T KOG4283|consen 337 RINCAAYRPDFEQCFTGDMNGNI 359 (397)
T ss_pred eeeEEeecCchhhhhccccCCcc
Confidence 79999999999999999999998
No 129
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.7e-22 Score=186.78 Aligned_cols=264 Identities=20% Similarity=0.295 Sum_probs=196.1
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--CCCE
Q 040062 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--DDSI 139 (689)
Q Consensus 62 l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~ 139 (689)
...|...|..+...--|+.||+|+.|++|+|+.++.+... +.+.+|.+|.++|+.++|.. .|.+
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s--------------~ll~~L~Gh~GPVwqv~wahPk~G~i 72 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS--------------KLLAELTGHSGPVWKVAWAHPKFGTI 72 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc--------------eeeeEecCCCCCeeEEeecccccCcE
Confidence 4568889999888888999999999999999999876431 67889999999999999976 6899
Q ss_pred EEEEeCCCeEEEEEcCCCeE--EEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 140 LASGSLDNTIHIWNMSTGIC--TAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 140 Lasgs~Dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
||+++.||.|.||.-.+++- ......|...|++++|-|. |-.|++++.||.|.|.+.++...
T Consensus 73 LAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~-------------- 138 (299)
T KOG1332|consen 73 LASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGG-------------- 138 (299)
T ss_pred eeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCC--------------
Confidence 99999999999999887643 4456679999999999995 46899999999999998765210
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
|........|.-.|.+++|.|....-.
T Consensus 139 -----------------------------------w~t~ki~~aH~~GvnsVswapa~~~g~------------------ 165 (299)
T KOG1332|consen 139 -----------------------------------WTTSKIVFAHEIGVNSVSWAPASAPGS------------------ 165 (299)
T ss_pred -----------------------------------ccchhhhhccccccceeeecCcCCCcc------------------
Confidence 000111234666677777776631000
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce-EEecccCCCCeEEEEEccCC----CeEEEEeCCCcEEEEEeeccc
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL-FVAKHFFTQSVVDLSWSPDG----YSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg----~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.........-+.|++|+.|+.|+||+..+++-. ......|...|++++|.|.- .+|++|+.||++.||..+ .+
T Consensus 166 -~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~-~e 243 (299)
T KOG1332|consen 166 -LVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD-EE 243 (299)
T ss_pred -ccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec-Cc
Confidence 000000011267999999999999999886322 22245789999999999963 579999999999999876 22
Q ss_pred cccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcccccee
Q 040062 371 LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTT 417 (689)
Q Consensus 371 l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~ 417 (689)
... +.. .........+..+.||..|.+|+.++.|..|+
T Consensus 244 ~e~------wk~---tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvt 281 (299)
T KOG1332|consen 244 YEP------WKK---TLLEEFPDVVWRVSWSLSGNILAVSGGDNKVT 281 (299)
T ss_pred cCc------ccc---cccccCCcceEEEEEeccccEEEEecCCcEEE
Confidence 110 000 11112334689999999999999999999983
No 130
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=1.5e-23 Score=221.19 Aligned_cols=260 Identities=22% Similarity=0.367 Sum_probs=219.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
|.+.+++....+-.+++|+... +-.|...|.|+..-..++.+++|+.|..+-+|.+...
T Consensus 2 ~~~~~~m~~~~~t~Lr~~~~~~-----------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---- 60 (825)
T KOG0267|consen 2 PGMEFLMKTKRATKLRVWDTRE-----------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---- 60 (825)
T ss_pred Ccccccceeeeeeccccccchh-----------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCC----
Confidence 3444556666667788888764 3458888999998778899999999999999987654
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
..+..+.+|...|.+|.|+++..+|++|+.+|+|++||++..+.++.+.+|...+..+.|+|-+.|+
T Consensus 61 -------------~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~ 127 (825)
T KOG0267|consen 61 -------------NAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFF 127 (825)
T ss_pred -------------chhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEe
Confidence 3445688999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCC
Q 040062 183 ASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNA 262 (689)
Q Consensus 183 as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~ 262 (689)
+.++.|..+++||.+...+.+.+ .+|..
T Consensus 128 a~gStdtd~~iwD~Rk~Gc~~~~----------------------------------------------------~s~~~ 155 (825)
T KOG0267|consen 128 ASGSTDTDLKIWDIRKKGCSHTY----------------------------------------------------KSHTR 155 (825)
T ss_pred ccccccccceehhhhccCceeee----------------------------------------------------cCCcc
Confidence 99999999999999765444433 34667
Q ss_pred CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEE
Q 040062 263 PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVD 342 (689)
Q Consensus 263 ~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 342 (689)
.+.++.|+|++ .+++.|+.|..++|||...++.+..+. .|...+..
T Consensus 156 vv~~l~lsP~G---------------------------------r~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~s 201 (825)
T KOG0267|consen 156 VVDVLRLSPDG---------------------------------RWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQS 201 (825)
T ss_pred eeEEEeecCCC---------------------------------ceeeccCCcceeeeecccccccccccc-cccccccc
Confidence 78888998887 899999999999999999998888776 47889999
Q ss_pred EEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 343 LSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 343 l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
+.|+|..-+|+.|+.|+++++||+++-+++..... ....|.+++|+|++..+++|..+.-
T Consensus 202 le~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~-------------~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 202 LEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKP-------------ETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred cccCchhhhhccCCCCceeeeeccceeEEeeccCC-------------ccCCceeeeecCCceeeecCchhhh
Confidence 99999999999999999999999998887654331 1235999999999999988765443
No 131
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.6e-20 Score=196.00 Aligned_cols=381 Identities=16% Similarity=0.184 Sum_probs=250.1
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
.+.+.+|....|-+++|+ ++.+|.+.+.+|.|.-||+.+ .+.+..+....+.|.+++.+|.++.++.|
T Consensus 61 ~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~-----------lk~~~~~d~~gg~IWsiai~p~~~~l~Ig 128 (691)
T KOG2048|consen 61 EPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHT-----------LKQKYNIDSNGGAIWSIAINPENTILAIG 128 (691)
T ss_pred eEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEeccc-----------CceeEEecCCCcceeEEEeCCccceEEee
Confidence 445566777899999999 556788888899999999997 78888888889999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
++||.+.+++...+.. .....|...++.|.++.|++++..|+.|+.||.|++||+.++..+....
T Consensus 129 cddGvl~~~s~~p~~I---------------~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~ 193 (691)
T KOG2048|consen 129 CDDGVLYDFSIGPDKI---------------TYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIIT 193 (691)
T ss_pred cCCceEEEEecCCceE---------------EEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEee
Confidence 9999777777665521 3344455567899999999999999999999999999999988776221
Q ss_pred --------cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 165 --------GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 165 --------~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
....-|+++.|-.+ ..|++|+.-|+|++||...+.+++.+..+... +.+++..+++.++++++.+
T Consensus 194 ~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~ad------Vl~Lav~~~~d~vfsaGvd 266 (691)
T KOG2048|consen 194 MQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDAD------VLALAVADNEDRVFSAGVD 266 (691)
T ss_pred ecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcc------eeEEEEcCCCCeEEEccCC
Confidence 12345777777744 47899999999999999999999988877655 8999999999999988765
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC--
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-- 314 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-- 314 (689)
......-..-...+|........|...+.+++..++- ...................-.........+....+.++..
T Consensus 267 ~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~-l~sgG~d~~l~i~~s~~~~~~~h~~~~~~p~~~~v~~a~~~~ 345 (691)
T KOG2048|consen 267 PKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENA-LISGGRDFTLAICSSREFKNMDHRQKNLFPASDRVSVAPENR 345 (691)
T ss_pred CceEEEEecCCccceeeeccccCCcccceeeeeecce-EEecceeeEEEEccccccCchhhhccccccccceeecCccce
Confidence 5433222222233466666667788888888877661 1111011000000000000000001111222233333333
Q ss_pred ------CCcEEEEeCCCC--------CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc----------
Q 040062 315 ------DRTITVWTTASP--------RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE---------- 370 (689)
Q Consensus 315 ------Dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~---------- 370 (689)
+..+.+|.+.+. ..+..+.......|.+.+.||||++|+.+.- ...++|.++..-
T Consensus 346 L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~ 424 (691)
T KOG2048|consen 346 LLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQPDPNVKVINVDDV 424 (691)
T ss_pred EEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEeccCcceeEEEeccc
Confidence 444555555443 1223333333567999999999999988772 133344333200
Q ss_pred ----------------------------ccc-ccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 371 ----------------------------LGH-RLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 371 ----------------------------l~~-~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
+.. .+.......+...........|+.++.|+||++||+.+.+|.| .+.
T Consensus 425 ~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~g~I--~v~ 502 (691)
T KOG2048|consen 425 PLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTRGQI--FVY 502 (691)
T ss_pred hhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEeccceE--EEE
Confidence 000 0000000011101111234468999999999999999999999 444
Q ss_pred ec
Q 040062 422 SD 423 (689)
Q Consensus 422 ~~ 423 (689)
.+
T Consensus 503 nl 504 (691)
T KOG2048|consen 503 NL 504 (691)
T ss_pred Ec
Confidence 43
No 132
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=3.3e-21 Score=185.46 Aligned_cols=240 Identities=16% Similarity=0.269 Sum_probs=186.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
-.||.|++.|.+||+|+.||.|.|||+.+ ...-+.+.+|..+|++++||+||+.|++++.|..|.+||+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T-----------~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl 94 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDT-----------FRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDL 94 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccc-----------cchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEec
Confidence 68999999999999999999999999998 6777889999999999999999999999999999999999
Q ss_pred CCCCCccccCCCCCCCcccc------eEEE----------EEec--C-------C----CCEEEEEEcCCCCEEEEEeCC
Q 040062 96 KPGSGTTEFGSGEPPDIENW------KVAM----------TLRG--H-------T----ADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~------~~~~----------~l~~--h-------~----~~V~~l~~spdg~~Lasgs~D 146 (689)
..+.....+....+.-...| +.+. .+.. | . ....+..|.+.|+++++|...
T Consensus 95 ~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsK 174 (405)
T KOG1273|consen 95 LKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSK 174 (405)
T ss_pred cCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCc
Confidence 99986655544433221111 1111 1110 0 0 011223467789999999999
Q ss_pred CeEEEEEcCCCeEEEEEecCC-CCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-------cc--eeeccCcccccCCcc
Q 040062 147 NTIHIWNMSTGICTAVLRGHS-SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW-------SL--AHRTDGHWAKSLGST 216 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~-------~~--~~~~~~~~~~~~~~~ 216 (689)
|.+.++|..+.+++..++-.. ..|+.|.|+-.|++|+.-+.|+.||.|+++.- +. .++++. .....
T Consensus 175 Gkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qD----vVNk~ 250 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQD----VVNKL 250 (405)
T ss_pred ceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHH----HHhhh
Confidence 999999999999999998776 88999999999999999999999999998631 11 122221 11223
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC-CCEEEEEEcCCc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN-APIIVVKFNHSM 273 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~-~~v~~v~fsp~~ 273 (689)
.-.+++||.+|.|+++++ ...+.+++|+.........+.|.. .....+.|+|-.
T Consensus 251 ~Wk~ccfs~dgeYv~a~s---~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~r 305 (405)
T KOG1273|consen 251 QWKKCCFSGDGEYVCAGS---ARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVR 305 (405)
T ss_pred hhhheeecCCccEEEecc---ccceeEEEEecCCcceeeeecCCchhheeecccccce
Confidence 356789999999999887 356889999999888888887776 566778888874
No 133
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=4.8e-21 Score=184.54 Aligned_cols=268 Identities=15% Similarity=0.168 Sum_probs=200.7
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
....|..|.|+|.+..|+.++.||.+++||+.... ... ...|..++.+++|.+ ...+++|+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~-----------------l~~-~~~~~~plL~c~F~d-~~~~~~G~ 72 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS-----------------LKL-KFKHGAPLLDCAFAD-ESTIVTGG 72 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchh-----------------hhh-heecCCceeeeeccC-CceEEEec
Confidence 35679999999999999999999999999998762 222 234899999999985 66899999
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEc
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
.||.|+.+|+.++....... |...|.||.+.+....+++|+.|++|++||.+.......+.... .|.++ +
T Consensus 73 ~dg~vr~~Dln~~~~~~igt-h~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-------kVy~~--~ 142 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGNEDQIGT-HDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-------KVYCM--D 142 (323)
T ss_pred cCceEEEEEecCCcceeecc-CCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-------eEEEE--e
Confidence 99999999999887665554 99999999999988899999999999999999744444443322 14443 3
Q ss_pred CCCCeEEEecCCCCCccccceeecCCceeeeee--cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 225 PCGHFITTTHGFQKPRHSAPVLERGEWAATFDF--LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l--~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
-.|+.|+++.. ...+.+|+.+.....+.. ..-.-.+.++++.|++
T Consensus 143 v~g~~LvVg~~----~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~----------------------------- 189 (323)
T KOG1036|consen 143 VSGNRLVVGTS----DRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNG----------------------------- 189 (323)
T ss_pred ccCCEEEEeec----CceEEEEEcccccchhhhccccceeEEEEEEEecCC-----------------------------
Confidence 45666666443 244556776655544322 1234567888888865
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCC----CceEEecccCC---------CCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASP----RPLFVAKHFFT---------QSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~----~~~~~~~~~h~---------~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
.=+++++-||.|.+=.++.. +..+.++. |. -+|++++|+|--+.|++|+.||.|.+||+.++
T Consensus 190 ----eGy~~sSieGRVavE~~d~s~~~~skkyaFkC-Hr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 190 ----EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKC-HRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ----CceEEEeecceEEEEccCCchHHhhhceeEEe-eecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch
Confidence 45788899999887665554 22233332 22 26999999999999999999999999999887
Q ss_pred ccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcc
Q 040062 370 ELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASA 412 (689)
Q Consensus 370 ~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~ 412 (689)
+.+..+ .+| ...|..++|+.||..||.++.
T Consensus 265 Krl~q~----------~~~---~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 265 KRLKQL----------AKY---ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred hhhhhc----------cCC---CCceEEEEeccCCCeEEEEec
Confidence 765433 223 346999999999999998753
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.2e-21 Score=196.04 Aligned_cols=248 Identities=17% Similarity=0.232 Sum_probs=187.0
Q ss_pred EEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 27 RFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 27 ~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
+++++. ....|.+|.+.. ........--.+.|.|++-+|+|.||+.|+..|.|++|.+.+|
T Consensus 52 yllsaq~~rp~l~vw~i~k-----------~~~~~q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG------- 113 (476)
T KOG0646|consen 52 YLLSAQLKRPLLHVWEILK-----------KDQVVQYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG------- 113 (476)
T ss_pred heeeecccCccccccccCc-----------hhhhhhhcccccceeeeecCCCceEEEeecccCcEEEEEeccc-------
Confidence 455443 235788888865 2222233345788999999999999999999999999999999
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC---------CCeEEEEEecCCCCeEEEEEc
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS---------TGICTAVLRGHSSLVKGVAWD 176 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~---------~~~~~~~l~~h~~~V~~l~~s 176 (689)
..+..+..|-..|+||.|+-|+.+|++|+.||.|.+|++. +-+.+..+..|.-+|+.+...
T Consensus 114 ----------~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig 183 (476)
T KOG0646|consen 114 ----------ILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIG 183 (476)
T ss_pred ----------cHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEec
Confidence 5677778999999999999999999999999999999863 346788899999999999887
Q ss_pred cC--CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 177 PI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 177 pd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
+. ..+|+|+|.|.++++||+..+.++.++..+.. +.++..+|.++.++++
T Consensus 184 ~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~s-------i~av~lDpae~~~yiG--------------------- 235 (476)
T KOG0646|consen 184 SGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSS-------IKAVALDPAERVVYIG--------------------- 235 (476)
T ss_pred CCCccceEEEecCCceEEEEEeccceeeEEEecCCc-------ceeEEEcccccEEEec---------------------
Confidence 65 36899999999999999999887777654432 4555555555555554
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC--------
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP-------- 326 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~-------- 326 (689)
+.+|.|.+.++..-
T Consensus 236 ----------------------------------------------------------t~~G~I~~~~~~~~~~~~~~v~ 257 (476)
T KOG0646|consen 236 ----------------------------------------------------------TEEGKIFQNLLFKLSGQSAGVN 257 (476)
T ss_pred ----------------------------------------------------------CCcceEEeeehhcCCccccccc
Confidence 44444443333211
Q ss_pred --------CceEEecccCCC--CeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCcee
Q 040062 327 --------RPLFVAKHFFTQ--SVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLA 396 (689)
Q Consensus 327 --------~~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~ 396 (689)
..+..+ .+|.. .|+||+++-||..|++|+.||.|+|||+.+.+.++++. ..+ +.|+
T Consensus 258 ~k~~~~~~t~~~~~-~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~---------~~k----gpVt 323 (476)
T KOG0646|consen 258 QKGRHEENTQINVL-VGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ---------TSK----GPVT 323 (476)
T ss_pred ccccccccceeeee-ccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh---------hhc----cccc
Confidence 112222 23555 89999999999999999999999999999887765543 233 3788
Q ss_pred eeecCc
Q 040062 397 NLAETP 402 (689)
Q Consensus 397 ~l~~Sp 402 (689)
.+.+.|
T Consensus 324 nL~i~~ 329 (476)
T KOG0646|consen 324 NLQINP 329 (476)
T ss_pred eeEeec
Confidence 888765
No 135
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=6.7e-21 Score=197.21 Aligned_cols=299 Identities=21% Similarity=0.326 Sum_probs=221.0
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC--EEEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR--YIASG 84 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~--~Lasg 84 (689)
.|.+|.| .|.||..+|.|.+|++|+.||+|+||.+.+ +++++++. ..+.|.||+|+|.+. .||++
T Consensus 395 vyrGHtg-~Vr~iSvdp~G~wlasGsdDGtvriWEi~T-----------gRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA 461 (733)
T KOG0650|consen 395 VYRGHTG-LVRSISVDPSGEWLASGSDDGTVRIWEIAT-----------GRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA 461 (733)
T ss_pred eEeccCC-eEEEEEecCCcceeeecCCCCcEEEEEeec-----------ceEEEEEe-ecceeEEEEecCCCCceeEEEE
Confidence 4668995 999999999999999999999999999998 89998886 556899999999765 45544
Q ss_pred eCCCeEEEEEcCCCCCc------cccCCC---CC--CCcccceE---------EEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGT------TEFGSG---EP--PDIENWKV---------AMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~------~~~~~~---~~--~~~~~~~~---------~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
-. ..+.|-+..-+... ..|... .. ..+..|.. +.....|...|..+.|+..|.||++..
T Consensus 462 ~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 462 VG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred ec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 44 34555554333111 111111 00 11223422 345566899999999999999999987
Q ss_pred CCC---eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 145 LDN---TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 145 ~Dg---~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
.++ .|.|+++.......-|+-..+.|.++.|+|...+|++++.. .|+|||+....++.++... ..++..+
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg------~kwiS~m 613 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTG------SKWISSM 613 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcC------Ceeeeee
Confidence 654 79999998877777776677889999999999999888865 8999999887777666533 4458999
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCc-eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
+.+|.|..|+.++.++... .++..-. .....+..|...+..++|++..
T Consensus 614 sihp~GDnli~gs~d~k~~----WfDldlsskPyk~lr~H~~avr~Va~H~ry--------------------------- 662 (733)
T KOG0650|consen 614 SIHPNGDNLILGSYDKKMC----WFDLDLSSKPYKTLRLHEKAVRSVAFHKRY--------------------------- 662 (733)
T ss_pred eecCCCCeEEEecCCCeeE----EEEcccCcchhHHhhhhhhhhhhhhhcccc---------------------------
Confidence 9999999998886654432 2222211 1233466789999999999886
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCC------CCC---ceEEecccCCC----CeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 301 KESQPYNVIAIGSQDRTITVWTTA------SPR---PLFVAKHFFTQ----SVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 301 ~~s~~~~~lasgs~Dg~I~iwd~~------~~~---~~~~~~~~h~~----~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
.++++|+.||.+.||--. ..- ++..+ .+|.. .|.+..|+|...+|++++.||+|++|
T Consensus 663 ------PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L-~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 663 ------PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRL-RGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ------ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeec-cCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 899999999999988422 111 12222 24544 48899999999999999999999998
No 136
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.88 E-value=3.2e-21 Score=185.36 Aligned_cols=257 Identities=23% Similarity=0.418 Sum_probs=203.3
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCC------cC--------CCCC----C-----------CCcccce
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMK------SV--------GKNF----E-----------NDESTQR 57 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~------~~--------~~~~----~-----------~~~~~~~ 57 (689)
.|.+|.| .|+||.|++.+.++++++.|++-.||... .. +++. + .......
T Consensus 185 ~Y~GH~G-SVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRv 263 (481)
T KOG0300|consen 185 TYTGHTG-SVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRV 263 (481)
T ss_pred eeccccc-ceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeee
Confidence 5778996 99999999999999999999999999831 10 0000 0 0012234
Q ss_pred eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
.+..|.+|.+.|.+..|-..|+.+++++.|.+..+||++++ ..+..+.+|....+.++-+|..
T Consensus 264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtg-----------------e~v~~LtGHd~ELtHcstHptQ 326 (481)
T KOG0300|consen 264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETG-----------------EVVNILTGHDSELTHCSTHPTQ 326 (481)
T ss_pred eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccC-----------------ceeccccCcchhccccccCCcc
Confidence 67788999999999999999999999999999999999998 7889999999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-eeeccCcccccCCc
Q 040062 138 SILASGSLDNTIHIWNMSTG-ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-AHRTDGHWAKSLGS 215 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~ 215 (689)
+++++.+.|.+.++||++.. ..+..|.+|...|+++.|.-+. .++++++|.+|++||+++... +.++.
T Consensus 327 rLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplATIR--------- 396 (481)
T KOG0300|consen 327 RLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLATIR--------- 396 (481)
T ss_pred eEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCcceeee---------
Confidence 99999999999999999853 4577899999999999998654 578999999999999987432 11111
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
...++..++.+...
T Consensus 397 --------------------------------------------tdS~~NRvavs~g~---------------------- 410 (481)
T KOG0300|consen 397 --------------------------------------------TDSPANRVAVSKGH---------------------- 410 (481)
T ss_pred --------------------------------------------cCCccceeEeecCC----------------------
Confidence 12233334443332
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce---EEecccCCCCeEEEEEccCC--CeEEEEeCCCcEEEEEeec
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL---FVAKHFFTQSVVDLSWSPDG--YSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~spdg--~~L~sgs~DG~I~vwd~~~ 368 (689)
.+|+.--.+..|++||++..+.. ..-..+|...|+|++|..+- .-|++|+-|..+.-|++..
T Consensus 411 -----------~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 411 -----------PIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred -----------ceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 57777777888999999765433 33445788899999998654 4588999999999999865
No 137
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=5.5e-21 Score=199.40 Aligned_cols=298 Identities=19% Similarity=0.210 Sum_probs=213.0
Q ss_pred EEEEEcCC---CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 17 FSIDVQPG---ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 17 ~si~~spd---g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+++.|++. ...||.+..||.|.++|....... .....+.....|.+.|..+.|.|....|++++.|.++++|
T Consensus 53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr-----~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W 127 (720)
T KOG0321|consen 53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFR-----LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW 127 (720)
T ss_pred ccccccCCCCccceEEEecCCCceeeecchhhhcc-----hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence 34677663 357899999999999998863211 1234456677899999999999977799999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCe--------------
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-------------- 158 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~-------------- 158 (689)
|+..... .-...+.+|...|.+++|.+++. .|++|+.||.|.|||++-..
T Consensus 128 dvk~s~l---------------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~ 192 (720)
T KOG0321|consen 128 DVKTSRL---------------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGR 192 (720)
T ss_pred eecccee---------------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhcc
Confidence 9998731 12224889999999999999875 88999999999999986321
Q ss_pred -------------EEEEEecCCCCeEE---EEEccCCCEEEEEeC-CCeEEEEECCCCcceeeccCcccc-----cCCcc
Q 040062 159 -------------CTAVLRGHSSLVKG---VAWDPIGSFIASQSD-DKTVIIWRTSDWSLAHRTDGHWAK-----SLGST 216 (689)
Q Consensus 159 -------------~~~~l~~h~~~V~~---l~~spdg~~las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~ 216 (689)
.+..-+.|...|.+ +.+..|...||+++. |+.|++||++.............. .....
T Consensus 193 ~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~ 272 (720)
T KOG0321|consen 193 HNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSV 272 (720)
T ss_pred ccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCccccee
Confidence 01111234444554 555678889999887 999999999876554433221111 11233
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee--eeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT--FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.+.++.....|.+|++.+.+ ..++.|+....... ..+.++. ..
T Consensus 273 G~~nL~lDssGt~L~AsCtD----~sIy~ynm~s~s~sP~~~~sg~~-------------------------------~~ 317 (720)
T KOG0321|consen 273 GQVNLILDSSGTYLFASCTD----NSIYFYNMRSLSISPVAEFSGKL-------------------------------NS 317 (720)
T ss_pred eeEEEEecCCCCeEEEEecC----CcEEEEeccccCcCchhhccCcc-------------------------------cc
Confidence 46778888889999988763 45556665443321 1111111 11
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeecc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~ 369 (689)
........++++.+|++|+.|...++|.+.+.+.-..+..+|...|++++|.|.. .-++++++|-.+++|++..+
T Consensus 318 sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred eeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 1112233466779999999999999999999887777778899999999998843 34777899999999999654
No 138
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.87 E-value=6.1e-21 Score=187.80 Aligned_cols=256 Identities=28% Similarity=0.487 Sum_probs=193.7
Q ss_pred eeecCceEEEEEEcCCC--CEEEEEeCCCeEEEEeCCcCCCCC-----CCCcccceeeeeecCCCCcEEEEEEcC-CCCE
Q 040062 9 VRHEGMQIFSIDVQPGA--LRFATGGGDHKVRIWNMKSVGKNF-----ENDESTQRLLATLRDHFGSVNCVRWAK-HGRY 80 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg--~~Latgs~Dg~V~IWd~~~~~~~~-----~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~ 80 (689)
+.|.| .|+.+..++-+ .+.|+-+..|.|+||++......+ .......+.+.++.+|.+.=+.++||| ..-.
T Consensus 148 i~h~g-~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 148 IPHYG-GINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred ccccc-ccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence 45774 77777777765 455666778999999987543222 222356788999999999999999999 2235
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceE-EEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC-
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV-AMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTG- 157 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~-~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~- 157 (689)
|++|..-+.|++|...++. |+. ...+.+|+..|-+|+|||.. ..|++|+.|++|+|||++.+
T Consensus 227 LlsGDc~~~I~lw~~~~g~---------------W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~ 291 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGS---------------WKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGP 291 (440)
T ss_pred cccCccccceEeeeeccCc---------------eeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCC
Confidence 8888888999999988762 322 23456799999999999975 49999999999999999987
Q ss_pred --eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 158 --ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 158 --~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.++.. +.|.+.|.-|.|+..-.+|++|++||+++|||+++.+...
T Consensus 292 ~~~~~~~-kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~-------------------------------- 338 (440)
T KOG0302|consen 292 KKAAVST-KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQ-------------------------------- 338 (440)
T ss_pred ccceeEe-eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCC--------------------------------
Confidence 33444 7899999999999988899999999999999998754321
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD 315 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D 315 (689)
....|..|..+|+++.|+|.. ...|++++.|
T Consensus 339 -----------------pVA~fk~Hk~pItsieW~p~e--------------------------------~s~iaasg~D 369 (440)
T KOG0302|consen 339 -----------------PVATFKYHKAPITSIEWHPHE--------------------------------DSVIAASGED 369 (440)
T ss_pred -----------------cceeEEeccCCeeEEEecccc--------------------------------CceEEeccCC
Confidence 112355699999999999984 4789999999
Q ss_pred CcEEEEeCCCCCc------------------eEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEE
Q 040062 316 RTITVWTTASPRP------------------LFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANF 364 (689)
Q Consensus 316 g~I~iwd~~~~~~------------------~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vw 364 (689)
..|.|||+....- +..+.. ....+..+.|++.- -+|++.+.||. .||
T Consensus 370 ~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 370 NQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred CcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccce-eEE
Confidence 9999999864221 111111 14568899999864 46777777874 444
No 139
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=9.8e-21 Score=199.38 Aligned_cols=283 Identities=19% Similarity=0.206 Sum_probs=226.6
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE-EEEc
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD-LNWS 134 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~s 134 (689)
.++.+.+.+|...|..+++.++. .+++++.||++++|+-... .|.....+.+|.+-|.. ++|-
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~---------------~~l~~~~~~~~~g~i~~~i~y~ 67 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGK---------------QYLETHAFEGPKGFIANSICYA 67 (745)
T ss_pred ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCc---------------ccccceecccCcceeeccceec
Confidence 46778899999999998887554 7999999999999987654 23455667778887777 8887
Q ss_pred C-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC
Q 040062 135 P-DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL 213 (689)
Q Consensus 135 p-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 213 (689)
+ ++-.|++|+.|.+|.+|...+.+++..+++|.+.|.++....++. +++||.|.++++|.. +++...+.+|...
T Consensus 68 e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as-- 142 (745)
T KOG0301|consen 68 ESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS-- 142 (745)
T ss_pred cccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchh--
Confidence 5 444699999999999999999999999999999999999877777 899999999999986 4455556666554
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
|..+.+.|++. ++++++ +..+++|..+.... .|.+|..-|..+++-++
T Consensus 143 ----VWAv~~l~e~~-~vTgsa----DKtIklWk~~~~l~--tf~gHtD~VRgL~vl~~--------------------- 190 (745)
T KOG0301|consen 143 ----VWAVASLPENT-YVTGSA----DKTIKLWKGGTLLK--TFSGHTDCVRGLAVLDD--------------------- 190 (745)
T ss_pred ----eeeeeecCCCc-EEeccC----cceeeeccCCchhh--hhccchhheeeeEEecC---------------------
Confidence 88999999994 445444 46778888755444 57789999999999887
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
..+++++.||.|++|++ +++.+.... +|..-|.++....++..++++++|++++||+.. ++.+
T Consensus 191 -------------~~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q 253 (745)
T KOG0301|consen 191 -------------SHFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQ 253 (745)
T ss_pred -------------CCeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEE
Confidence 47999999999999999 677777654 689999999988889999999999999999976 4443
Q ss_pred ccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 374 RLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 374 ~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.+.. ....|+++.+-++|. |++|+.||.| +++.-.
T Consensus 254 ~I~l-------------PttsiWsa~~L~NgD-Ivvg~SDG~V--rVfT~~ 288 (745)
T KOG0301|consen 254 VITL-------------PTTSIWSAKVLLNGD-IVVGGSDGRV--RVFTVD 288 (745)
T ss_pred EEec-------------CccceEEEEEeeCCC-EEEeccCceE--EEEEec
Confidence 3321 112477777777776 6788999999 766533
No 140
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.1e-20 Score=188.43 Aligned_cols=280 Identities=11% Similarity=0.159 Sum_probs=221.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEe
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGS 144 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs 144 (689)
.+.|++|.|+|....|++++.|++++||.++.... ..++.+.-...+|.+.+|.|+|. .+++++
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N---------------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~ 277 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVN---------------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSG 277 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccC---------------hhheeeeeccCccceeeecCCCceEEEecc
Confidence 46899999999999999999999999999976421 35555666678899999999999 899999
Q ss_pred CCCeEEEEEcCCCeEEE--EEecCC-CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 145 LDNTIHIWNMSTGICTA--VLRGHS-SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~--~l~~h~-~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
....++.||+.+.+... .+.++. ..+.....++++++|+..+..|.|.+....+++.+..+..... +..+
T Consensus 278 rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~-------v~~~ 350 (514)
T KOG2055|consen 278 RRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGV-------VSDF 350 (514)
T ss_pred cceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccE-------EeeE
Confidence 99999999998876543 333443 4566788899999999999999999999999998888765432 8899
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEE--EEEEcCCccccccccccccccccccccCCccccc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPII--VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~--~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
+|+.||+.|++++++ ..+.+|+.+...+...+.. .+.|. .++.++
T Consensus 351 ~fsSdsk~l~~~~~~----GeV~v~nl~~~~~~~rf~D-~G~v~gts~~~S~---------------------------- 397 (514)
T KOG2055|consen 351 TFSSDSKELLASGGT----GEVYVWNLRQNSCLHRFVD-DGSVHGTSLCISL---------------------------- 397 (514)
T ss_pred EEecCCcEEEEEcCC----ceEEEEecCCcceEEEEee-cCccceeeeeecC----------------------------
Confidence 999999999998774 4667888877766655543 23333 333333
Q ss_pred CccCCCCcEEEEEeCCCcEEEEeCCC------CCceEEecccCCCCeEEEEEccCCCeEEEEeC--CCcEEEEEeecccc
Q 040062 300 GKESQPYNVIAIGSQDRTITVWTTAS------PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL--DGTVANFHFEVKEL 371 (689)
Q Consensus 300 ~~~s~~~~~lasgs~Dg~I~iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~--DG~I~vwd~~~~~l 371 (689)
++.+||+|+..|.|.|||.++ .+++..+... ...|++|.|++|++.|+.+|. +..+++.++.+...
T Consensus 398 -----ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV 471 (514)
T KOG2055|consen 398 -----NGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV 471 (514)
T ss_pred -----CCceEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceee
Confidence 448999999999999999653 4566555433 567999999999999998875 67899999988776
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
...++.. ...-+.++||+|||.+-+||.|..+|.|
T Consensus 472 FsNfP~~----------n~~vg~vtc~aFSP~sG~lAvGNe~grv 506 (514)
T KOG2055|consen 472 FSNFPTS----------NTKVGHVTCMAFSPNSGYLAVGNEAGRV 506 (514)
T ss_pred eccCCCC----------CCcccceEEEEecCCCceEEeecCCCce
Confidence 6544321 2233479999999999999999999998
No 141
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=2.3e-20 Score=179.68 Aligned_cols=277 Identities=18% Similarity=0.246 Sum_probs=202.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCe
Q 040062 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNT 148 (689)
Q Consensus 69 V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~ 148 (689)
-.|+.|++.|.+||+|+.||.|.|||+.+- ...+.+.+|..+|++++||+||+.|++++.|..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~-----------------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF-----------------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS 88 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc-----------------chhhhhhccccceeEEEecCCCCEeeeecCCce
Confidence 789999999999999999999999999886 466778899999999999999999999999999
Q ss_pred EEEEEcCCCeEEEEEecCCCCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 149 IHIWNMSTGICTAVLRGHSSLVKGVAWDPIG--SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg--~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
|.+||+..|.+++.++ ..++|+...|+|.. +.+++-- +..-.+-++.... +.+-...........-.+..|.+.
T Consensus 89 i~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr~ 164 (405)
T KOG1273|consen 89 IKLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDRR 164 (405)
T ss_pred eEEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCc--eeeccCCCccccccccccccccCC
Confidence 9999999999999998 78999999999954 3444433 3345555555422 211111111111112344579999
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecCCC-CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN-APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~-~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
|++|+++.+ .+.+.+++..+.++...+.-.. ..|..+.|+..+
T Consensus 165 g~yIitGts----KGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g-------------------------------- 208 (405)
T KOG1273|consen 165 GKYIITGTS----KGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG-------------------------------- 208 (405)
T ss_pred CCEEEEecC----cceEEEEecchheeeeeeeechheeeeEEEEeccC--------------------------------
Confidence 999999876 4555677777777666655444 567777776665
Q ss_pred CcEEEEEeCCCcEEEEeCCCC---------CceEEeccc-CCCCeEEEEEccCCCeEEEEeC-CCcEEEEEeeccccccc
Q 040062 306 YNVIAIGSQDRTITVWTTASP---------RPLFVAKHF-FTQSVVDLSWSPDGYSLFACSL-DGTVANFHFEVKELGHR 374 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~---------~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~-DG~I~vwd~~~~~l~~~ 374 (689)
++|++-+.|+.|+.|+++.- ++...++.. ....=.+++||.||.|+++++. -..++||.-..|.+...
T Consensus 209 -~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKI 287 (405)
T KOG1273|consen 209 -RFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKI 287 (405)
T ss_pred -cEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeee
Confidence 89999999999999998621 111111111 1123457899999999988774 45799999999998876
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
+.+. .......+.|+|-...|++- ..|.+
T Consensus 288 LhG~------------kgE~l~DV~whp~rp~i~si-~sg~v 316 (405)
T KOG1273|consen 288 LHGT------------KGEELLDVNWHPVRPIIASI-ASGVV 316 (405)
T ss_pred ecCC------------chhheeecccccceeeeeec-cCCce
Confidence 5432 22346778899888888876 66777
No 142
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.86 E-value=8.6e-19 Score=182.08 Aligned_cols=263 Identities=10% Similarity=0.064 Sum_probs=190.8
Q ss_pred eEEEEEEcCCCCEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEE
Q 040062 15 QIFSIDVQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-SDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~Dg~I~i 92 (689)
.+.+++|+|+++++ ++++.++.|++||..+ ++.+..+..+.. +..++|+|++++|+++ +.|+.|++
T Consensus 32 ~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 32 RPRGITLSKDGKLLYVCASDSDTIQVIDLAT-----------GEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred CCCceEECCCCCEEEEEECCCCeEEEEECCC-----------CcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEE
Confidence 47889999999876 5667789999999986 555555554443 5678999999977654 56899999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCeEEEEEecCCCCeE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN-TIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg-~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
||+.+. +.+..+. +...+.+++|+|++.+++++..++ .+.+||..+++....+. ....+.
T Consensus 100 ~d~~~~-----------------~~~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~ 160 (300)
T TIGR03866 100 IDIETR-----------------KVLAEIP-VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VDQRPR 160 (300)
T ss_pred EECCCC-----------------eEEeEee-CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cCCCcc
Confidence 999875 3444443 234568899999999999988765 56778998887766554 334557
Q ss_pred EEEEccCCCEEEEE-eCCCeEEEEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 172 GVAWDPIGSFIASQ-SDDKTVIIWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 172 ~l~~spdg~~las~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
+++|+|++++|+.+ ..++.|++||+++++.+..+....... ........+.|+|++++++++.... ..+.+|+..
T Consensus 161 ~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~---~~i~v~d~~ 237 (300)
T TIGR03866 161 FAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPA---NRVAVVDAK 237 (300)
T ss_pred EEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCC---CeEEEEECC
Confidence 89999999988655 468999999999988766554321110 1112245688999999876654322 346678876
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE-eCCCcEEEEeCCCCCc
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG-SQDRTITVWTTASPRP 328 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg-s~Dg~I~iwd~~~~~~ 328 (689)
++.....+ .+...+.++.|+|++ .+|+++ +.++.|.+||+++++.
T Consensus 238 ~~~~~~~~-~~~~~~~~~~~~~~g---------------------------------~~l~~~~~~~~~i~v~d~~~~~~ 283 (300)
T TIGR03866 238 TYEVLDYL-LVGQRVWQLAFTPDE---------------------------------KYLLTTNGVSNDVSVIDVAALKV 283 (300)
T ss_pred CCcEEEEE-EeCCCcceEEECCCC---------------------------------CEEEEEcCCCCeEEEEECCCCcE
Confidence 66554333 244578889999886 677765 5689999999999998
Q ss_pred eEEecccCCCCeEEEEEcc
Q 040062 329 LFVAKHFFTQSVVDLSWSP 347 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~sp 347 (689)
+..+.. ....+.++++|
T Consensus 284 ~~~~~~--~~~~~~~~~~~ 300 (300)
T TIGR03866 284 IKSIKV--GRLPWGVVVRP 300 (300)
T ss_pred EEEEEc--ccccceeEeCC
Confidence 888764 45568888765
No 143
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.86 E-value=3.5e-20 Score=186.80 Aligned_cols=301 Identities=18% Similarity=0.230 Sum_probs=212.1
Q ss_pred eecCceEEEEEEcCCC--CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeC
Q 040062 10 RHEGMQIFSIDVQPGA--LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSD 86 (689)
Q Consensus 10 ~H~g~~I~si~~spdg--~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~ 86 (689)
-|. .+|+|++|+|.. +++|+|..-|.|-+||+.... ....-+..+..|.++|.++.|+| +...+++.+.
T Consensus 184 v~~-~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSy 255 (498)
T KOG4328|consen 184 VTD-RRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------KDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSY 255 (498)
T ss_pred ecc-cceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------CccCceEEeccCCccccceEecCCChhheeeecc
Confidence 355 599999999976 478888889999999996311 12344566788999999999999 5568999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-EEEEec
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC-TAVLRG 165 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~-~~~l~~ 165 (689)
||+|++-|++.+.. +.+..+......+..+.|+.+...++.+..=|...+||.+++.. ...++-
T Consensus 256 DGtiR~~D~~~~i~---------------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l 320 (498)
T KOG4328|consen 256 DGTIRLQDFEGNIS---------------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL 320 (498)
T ss_pred Cceeeeeeecchhh---------------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh
Confidence 99999999987632 23333333455678888998888788887777999999998654 666777
Q ss_pred CCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 166 HSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 166 h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
|...|.+|+++|-. .+|+|++.|++.+|||++.......- ..........|.+..|||.+-.|++.+.+ ..++
T Consensus 321 h~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp--~lst~~HrrsV~sAyFSPs~gtl~TT~~D----~~IR 394 (498)
T KOG4328|consen 321 HKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASP--FLSTLPHRRSVNSAYFSPSGGTLLTTCQD----NEIR 394 (498)
T ss_pred hhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCc--ceecccccceeeeeEEcCCCCceEeeccC----CceE
Confidence 99999999999965 68999999999999999875443320 00011223348999999998888888764 4455
Q ss_pred eeecC---CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 245 VLERG---EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 245 i~~~~---~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
+|+.. .+........|...- ..| .......+.++.++|++|-.-..|-||
T Consensus 395 v~dss~~sa~~~p~~~I~Hn~~t------------------------~Rw---lT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 395 VFDSSCISAKDEPLGTIPHNNRT------------------------GRW---LTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred EeecccccccCCccceeeccCcc------------------------ccc---ccchhheeCCCccEEEEeccCcceeEE
Confidence 66653 222222222222110 000 011122334456899999999999999
Q ss_pred eCCCCCceEEecccCCCCeEE-EEEccCCCeEEE-EeCCCcEEEEEe
Q 040062 322 TTASPRPLFVAKHFFTQSVVD-LSWSPDGYSLFA-CSLDGTVANFHF 366 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~s-gs~DG~I~vwd~ 366 (689)
|-..++.+..+.......|.+ ..|+|-+..+++ ++..|.|+||--
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~ 494 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN 494 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence 999888787766554445555 479998885555 556788888853
No 144
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=9.4e-20 Score=197.68 Aligned_cols=275 Identities=20% Similarity=0.285 Sum_probs=218.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
.|....+.|+|.|+|.+|.+|+.||.|++|+...... +| ..+..+...|.+++. ++.+|+++
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e-------~P---------~ti~~~g~~v~~ia~--~s~~f~~~ 72 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE-------EP---------ETIDISGELVSSIAC--YSNHFLTG 72 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc-------CC---------chhhccCceeEEEee--cccceEEe
Confidence 5888899999999999999999999999998765421 11 111126666777766 45699999
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
+.+++|.+|.+.+++.-..+....-++.+++|+.+|++++.|++|-.|++-++.+......+.++... +.++.|
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap------Vl~l~~ 146 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP------VLQLSY 146 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCc------eeeeeE
Confidence 99999999999988776666667788999999999999999999999999999999998888888665 999999
Q ss_pred cCCCCeEEEecCCCCCccccceeecCCceeeeeecCC--------CCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 224 SPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGH--------NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 224 spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h--------~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
+|.+++|++... .+.+.+|+..+......+.+- ...+..++|+|++
T Consensus 147 ~p~~~fLAvss~----dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~---------------------- 200 (933)
T KOG1274|consen 147 DPKGNFLAVSSC----DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKG---------------------- 200 (933)
T ss_pred cCCCCEEEEEec----CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCC----------------------
Confidence 999999999876 456678887766554443321 3455667788775
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCC-eEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS-VVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
..++..+.|+.|++|+.......+.+...+... +.++.|+|+|+|||+++.||.|.|||.++.+.
T Consensus 201 -----------g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--- 266 (933)
T KOG1274|consen 201 -----------GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--- 266 (933)
T ss_pred -----------CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh---
Confidence 677788889999999999999998887755544 99999999999999999999999999987222
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
+ .....|++++|-|++.-|-.-...|..
T Consensus 267 -----------~---~~~~~Vc~~aw~p~~n~it~~~~~g~~ 294 (933)
T KOG1274|consen 267 -----------H---EFKRAVCCEAWKPNANAITLITALGTL 294 (933)
T ss_pred -----------c---cccceeEEEecCCCCCeeEEEeecccc
Confidence 1 112369999999988766544444443
No 145
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.85 E-value=1.3e-20 Score=191.06 Aligned_cols=238 Identities=20% Similarity=0.296 Sum_probs=191.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.-|.+|.++|||+.|++|+.-.++.|||+... ..+.-..+....-..++++.+||.+..++|..||.|.||
T Consensus 466 nyiRSckL~pdgrtLivGGeastlsiWDLAap---------TprikaeltssapaCyALa~spDakvcFsccsdGnI~vw 536 (705)
T KOG0639|consen 466 NYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP---------TPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVW 536 (705)
T ss_pred cceeeeEecCCCceEEeccccceeeeeeccCC---------CcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEE
Confidence 57999999999999999999999999999862 233333444334456789999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
|+.+. ..++.|.+|...+.||.+++||..|-+|+.|++|+.||++++..+.... ..+.|.++
T Consensus 537 DLhnq-----------------~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSL 598 (705)
T KOG0639|consen 537 DLHNQ-----------------TLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSL 598 (705)
T ss_pred Ecccc-----------------eeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheec
Confidence 99987 7899999999999999999999999999999999999999988776654 56889999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
.++|.+.+|+.|-+++.+.+-.....+ ...+..+ ...|.++.|.+.|+++++.+.++ .+..|...-...
T Consensus 599 g~cP~~dWlavGMens~vevlh~skp~-kyqlhlh------eScVLSlKFa~cGkwfvStGkDn----lLnawrtPyGas 667 (705)
T KOG0639|consen 599 GYCPTGDWLAVGMENSNVEVLHTSKPE-KYQLHLH------ESCVLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGAS 667 (705)
T ss_pred ccCCCccceeeecccCcEEEEecCCcc-ceeeccc------ccEEEEEEecccCceeeecCchh----hhhhccCccccc
Confidence 999999999999999988887764332 2222222 33489999999999999987644 333555444444
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.+... ...+|.++..+.+. ++|++|+.|....||.+
T Consensus 668 iFqsk-E~SsVlsCDIS~dd---------------------------------kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 668 IFQSK-ESSSVLSCDISFDD---------------------------------KYIVTGSGDKKATVYEV 703 (705)
T ss_pred eeecc-ccCcceeeeeccCc---------------------------------eEEEecCCCcceEEEEE
Confidence 44432 35677887776664 89999999999988875
No 146
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.6e-19 Score=187.18 Aligned_cols=287 Identities=21% Similarity=0.280 Sum_probs=214.0
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
.+...+.+|.+.|.||...|.|.+|++|++||+|+||.+.++ +++..+. ....|.|++|+|.
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg-----------------Rcvr~~~-~d~~I~~vaw~P~ 452 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG-----------------RCVRTVQ-FDSEIRSVAWNPL 452 (733)
T ss_pred eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc-----------------eEEEEEe-ecceeEEEEecCC
Confidence 445567899999999999999999999999999999999998 6676665 4568999999997
Q ss_pred CC--EEEEEeCCCeEEEEEcCCC------------------------------------e-EEEEEecCCCCeEEEEEcc
Q 040062 137 DS--ILASGSLDNTIHIWNMSTG------------------------------------I-CTAVLRGHSSLVKGVAWDP 177 (689)
Q Consensus 137 g~--~Lasgs~Dg~I~vwd~~~~------------------------------------~-~~~~l~~h~~~V~~l~~sp 177 (689)
+. .||++-. ..+.|.+..-| + -++..-.|...|..|.|+.
T Consensus 453 ~~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr 531 (733)
T KOG0650|consen 453 SDLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR 531 (733)
T ss_pred CCceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeec
Confidence 65 4444433 33444442111 0 0122334888999999999
Q ss_pred CCCEEEEEeCC---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 178 IGSFIASQSDD---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 178 dg~~las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
.|.||++..-+ ..|.|+++.......-+ .+ ....+.++.|.|...+++++.. ..+++++.......
T Consensus 532 kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF----~k--skG~vq~v~FHPs~p~lfVaTq-----~~vRiYdL~kqelv 600 (733)
T KOG0650|consen 532 KGDYLATVMPDSGNKSVLIHQLSKRKSQSPF----RK--SKGLVQRVKFHPSKPYLFVATQ-----RSVRIYDLSKQELV 600 (733)
T ss_pred CCceEEEeccCCCcceEEEEecccccccCch----hh--cCCceeEEEecCCCceEEEEec-----cceEEEehhHHHHH
Confidence 99999987653 46889988654433222 22 1233899999999999988865 56777777665555
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH 334 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 334 (689)
..+......|..++.+|.| .-|++|+.|+.+..||+.-.........
T Consensus 601 KkL~tg~kwiS~msihp~G---------------------------------Dnli~gs~d~k~~WfDldlsskPyk~lr 647 (733)
T KOG0650|consen 601 KKLLTGSKWISSMSIHPNG---------------------------------DNLILGSYDKKMCWFDLDLSSKPYKTLR 647 (733)
T ss_pred HHHhcCCeeeeeeeecCCC---------------------------------CeEEEecCCCeeEEEEcccCcchhHHhh
Confidence 5566667788888888876 7899999999999999987755555556
Q ss_pred cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec------cccccccChHHHHHHHHhccCCccC----ceeeeecCchh
Q 040062 335 FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV------KELGHRLSDAELDELKRSRYGDVRG----RLANLAETPAQ 404 (689)
Q Consensus 335 ~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~------~~l~~~l~~~~~~~~~~~~~g~~~~----~I~~l~~Spdg 404 (689)
.|...+++++|++.-.++++|+.||++.||.-.- +-++.++ .+..+|.. .|..+.|+|..
T Consensus 648 ~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPl----------K~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 648 LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPL----------KRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred hhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEee----------eeccCceeecccceEeecccCCC
Confidence 7899999999999999999999999999987332 1111111 11222332 37888999999
Q ss_pred hhhHhhccccce
Q 040062 405 LLLEAASAKETT 416 (689)
Q Consensus 405 ~~Las~s~DG~v 416 (689)
.+|.+++.||++
T Consensus 718 pWLfsAGAd~ti 729 (733)
T KOG0650|consen 718 PWLFSAGADGTI 729 (733)
T ss_pred ceEEecCCCceE
Confidence 999999999998
No 147
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=1.3e-19 Score=189.18 Aligned_cols=277 Identities=19% Similarity=0.304 Sum_probs=198.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|+.++|-|||..|+.+.. ..+.|||... +.++.++++|...|+|++|+.||+.+|||+.|+.|.+|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~nd-----------G~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~ 81 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSD-----------GTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWT 81 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCC-----------cccccccccccceEEEEEEccCCceeccCCCceeEEEec
Confidence 6999999999998887766 4799999987 899999999999999999999999999999999999998
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVA 174 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 174 (689)
-.-.. .. -..|...|.|+.|+|-...|++++. +..-+|........+ .+ ....|.+++
T Consensus 82 ~klEG------------------~L-kYSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K-~k-ss~R~~~Cs 139 (1081)
T KOG1538|consen 82 SKLEG------------------IL-KYSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSK-HK-SSSRIICCS 139 (1081)
T ss_pred ccccc------------------ee-eeccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHh-hh-hheeEEEee
Confidence 65431 11 2359999999999999999999986 457788875543322 22 346788999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
|..||.+|+.|-.||+|.|-+- +++....++.+.. ....|.+++|+|.... +....+.+. .|...
T Consensus 140 WtnDGqylalG~~nGTIsiRNk-~gEek~~I~Rpgg---~Nspiwsi~~~p~sg~--------G~~di~aV~---DW~qT 204 (1081)
T KOG1538|consen 140 WTNDGQYLALGMFNGTISIRNK-NGEEKVKIERPGG---SNSPIWSICWNPSSGE--------GRNDILAVA---DWGQT 204 (1081)
T ss_pred ecCCCcEEEEeccCceEEeecC-CCCcceEEeCCCC---CCCCceEEEecCCCCC--------CccceEEEE---eccce
Confidence 9999999999999999998854 4444444443322 1334899999987531 111111111 22222
Q ss_pred eeecCCCCC----EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE
Q 040062 255 FDFLGHNAP----IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 255 ~~l~~h~~~----v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~ 330 (689)
..|..-++. -..+.|.|.. ....++|.+++.|+.|+.+++|. +.|-.+.
T Consensus 205 LSFy~LsG~~Igk~r~L~FdP~C--------------------------isYf~NGEy~LiGGsdk~L~~fT-R~GvrLG 257 (1081)
T KOG1538|consen 205 LSFYQLSGKQIGKDRALNFDPCC--------------------------ISYFTNGEYILLGGSDKQLSLFT-RDGVRLG 257 (1081)
T ss_pred eEEEEecceeecccccCCCCchh--------------------------heeccCCcEEEEccCCCceEEEe-ecCeEEe
Confidence 222111110 0111122211 11233559999999999999997 4555555
Q ss_pred EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 331 VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
++-. ...+|+.+...|++++++.|+.||+|..|++-.
T Consensus 258 Tvg~-~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 TVGE-QDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eccc-cceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 5544 578999999999999999999999999999754
No 148
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.84 E-value=7.4e-19 Score=170.50 Aligned_cols=294 Identities=24% Similarity=0.408 Sum_probs=202.4
Q ss_pred eecCceEEEEEEcC-----CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--CCCCcEEEEEEcCC----C
Q 040062 10 RHEGMQIFSIDVQP-----GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--DHFGSVNCVRWAKH----G 78 (689)
Q Consensus 10 ~H~g~~I~si~~sp-----dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fspd----g 78 (689)
.|. .+|+.++|.+ .-..+||.|. ..+.||.+.... ..+.++.+. .|......++|+-+ .
T Consensus 36 d~~-~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~--------~ir~lq~y~D~d~~Esfytcsw~yd~~~~~ 105 (385)
T KOG1034|consen 36 DHN-KPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDG--------GIRLLQSYADEDHDESFYTCSWSYDSNTGN 105 (385)
T ss_pred cCC-CccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcc--------ceeeeeeccCCCCCcceEEEEEEecCCCCC
Confidence 344 6899999985 3356777776 589999987521 113333332 47778888899763 3
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCC
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~ 157 (689)
-+||.++.-|.|+|.|+.++ +....+.+|...|..|.|+|+. +++++++.|..|++|++++.
T Consensus 106 p~la~~G~~GvIrVid~~~~-----------------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~ 168 (385)
T KOG1034|consen 106 PFLAAGGYLGVIRVIDVVSG-----------------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD 168 (385)
T ss_pred eeEEeecceeEEEEEecchh-----------------hhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence 48999999999999999987 6788899999999999999986 59999999999999999999
Q ss_pred eEEEEE---ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc------------------cc----c
Q 040062 158 ICTAVL---RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW------------------AK----S 212 (689)
Q Consensus 158 ~~~~~l---~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~------------------~~----~ 212 (689)
.++..+ .+|.+.|.++.|+.+|.+|++++.|.+|++|++...+....++... .. .
T Consensus 169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d 248 (385)
T KOG1034|consen 169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD 248 (385)
T ss_pred eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence 999886 5699999999999999999999999999999998543332222110 00 0
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee--------------eeecCCCCCEEEEEEcCCcccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT--------------FDFLGHNAPIIVVKFNHSMFRRNS 278 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~--------------~~l~~h~~~v~~v~fsp~~~~~~~ 278 (689)
....++.++.|- |.++++-+..+ .+..|..+..... ..+.-....+..+.|.-+
T Consensus 249 iHrnyVDCvrw~--gd~ilSkscen----aI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d------ 316 (385)
T KOG1034|consen 249 IHRNYVDCVRWF--GDFILSKSCEN----AIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFD------ 316 (385)
T ss_pred cccchHHHHHHH--hhheeecccCc----eEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeec------
Confidence 001111111111 23343333222 2223333211111 111112233333333322
Q ss_pred ccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc---cCCCCeEEEEEccCCCeEEEE
Q 040062 279 ASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH---FFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~L~sg 355 (689)
+-.++||.|.+.|.|.+||++...+...... .....|...+||.||..|+..
T Consensus 317 -------------------------~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~v 371 (385)
T KOG1034|consen 317 -------------------------PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLV 371 (385)
T ss_pred -------------------------HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEE
Confidence 2347899999999999999998776422111 224579999999999999999
Q ss_pred eCCCcEEEEEee
Q 040062 356 SLDGTVANFHFE 367 (689)
Q Consensus 356 s~DG~I~vwd~~ 367 (689)
++|++|.-||.-
T Consensus 372 cdd~~Vwrwdrv 383 (385)
T KOG1034|consen 372 CDDGTVWRWDRV 383 (385)
T ss_pred eCCCcEEEEEee
Confidence 999999999853
No 149
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.83 E-value=2.3e-19 Score=181.98 Aligned_cols=292 Identities=17% Similarity=0.228 Sum_probs=219.8
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcc
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIE 113 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 113 (689)
..++|||+.... ...+.+..-..| .+.++.|+.... .+++.+.|..|++|.-....+.
T Consensus 12 d~~kl~D~s~~~-------~~~~~~~~t~~p--g~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~------------ 70 (673)
T KOG4378|consen 12 DKTKLSDFSDLE-------TKSEYVHQTAEP--GDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE------------ 70 (673)
T ss_pred CceEEeeccccc-------CccccccCCCCC--cceeeeccccceEEEeecCCceeEEEecccCCCCc------------
Confidence 479999998621 112222222222 389999997664 3345567889999976543110
Q ss_pred cceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEE
Q 040062 114 NWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII 193 (689)
Q Consensus 114 ~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~i 193 (689)
...+..+.+. .-.|++......|+++|+..+.|+|||++...+.+.+++|.+.|+++.++-...|||+++..|.|.|
T Consensus 71 -Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiii 147 (673)
T KOG4378|consen 71 -VPRVRKLTGD--NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIII 147 (673)
T ss_pred -cceeeccccc--hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEE
Confidence 0222333332 3345554445689999999999999999988888899999999999999999999999999999999
Q ss_pred EECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee-cCCCCCEEEEEEcCC
Q 040062 194 WRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF-LGHNAPIIVVKFNHS 272 (689)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~h~~~v~~v~fsp~ 272 (689)
..+.++.....+...... .++-+.|++..++++...+++ ..+.+|+.......+.+ ..|..+...++|+|.
T Consensus 148 h~~~t~~~tt~f~~~sgq-----svRll~ys~skr~lL~~asd~---G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps 219 (673)
T KOG4378|consen 148 HGTKTKQKTTTFTIDSGQ-----SVRLLRYSPSKRFLLSIASDK---GAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS 219 (673)
T ss_pred EecccCccccceecCCCC-----eEEEeecccccceeeEeeccC---CeEEEEeccCCCcccchhhhccCCcCcceecCC
Confidence 999988877777655322 267899999999998877765 45668887766665553 479999999999998
Q ss_pred ccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeE
Q 040062 273 MFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSL 352 (689)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L 352 (689)
. ..+|++-+.|..|.+||+...+....+.- ..+.+.++|+++|.+|
T Consensus 220 n--------------------------------e~l~vsVG~Dkki~~yD~~s~~s~~~l~y--~~Plstvaf~~~G~~L 265 (673)
T KOG4378|consen 220 N--------------------------------EALLVSVGYDKKINIYDIRSQASTDRLTY--SHPLSTVAFSECGTYL 265 (673)
T ss_pred c--------------------------------cceEEEecccceEEEeecccccccceeee--cCCcceeeecCCceEE
Confidence 4 47899999999999999998776665543 5678999999999999
Q ss_pred EEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchh
Q 040062 353 FACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ 404 (689)
Q Consensus 353 ~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg 404 (689)
++|+..|.|..||+...+... .....|...|++++|-+.-
T Consensus 266 ~aG~s~G~~i~YD~R~~k~Pv------------~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 266 CAGNSKGELIAYDMRSTKAPV------------AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred EeecCCceEEEEecccCCCCc------------eEeeecccceeEEEeeecc
Confidence 999999999999998654321 2233567779999997754
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.83 E-value=4.8e-19 Score=178.17 Aligned_cols=300 Identities=19% Similarity=0.260 Sum_probs=206.3
Q ss_pred EEEEEEcCCCCEEEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCC----CCcEEEEEEcC-------CCCEE
Q 040062 16 IFSIDVQPGALRFATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDH----FGSVNCVRWAK-------HGRYI 81 (689)
Q Consensus 16 I~si~~spdg~~Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h----~~~V~~v~fsp-------dg~~L 81 (689)
.-.+.+-|+.++|+++-. ...+.+|=.+. ..-.-+-.| ...-.|++|.. .|+|+
T Consensus 128 ~de~~V~psDnlIl~ar~eddvs~LEvYVyn~------------~e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyv 195 (463)
T KOG0270|consen 128 KDEEQVKPSDNLILCARNEDDVSYLEVYVYNE------------EEENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYV 195 (463)
T ss_pred cccceeccCCcEEEEeeccCCceEEEEEEEcC------------CCcceeEecceeccCcchhhhhhhcCCCCCCCcceE
Confidence 345666787777777643 23444443332 001111112 23346777754 36799
Q ss_pred EEEeCCCeEEEEEcCCCCCcc---ccCCCCCCCc-ccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCC
Q 040062 82 ASGSDDQVILIHEKKPGSGTT---EFGSGEPPDI-ENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMST 156 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~---~~~~~~~~~~-~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~ 156 (689)
|.|+.|..|.|||++-..... .++....... ...+.-....+|+..|.+|+|+..- +.||+|+.|.+|++||+.+
T Consensus 196 AiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~ 275 (463)
T KOG0270|consen 196 AIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDT 275 (463)
T ss_pred EEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCC
Confidence 999999999999997543221 1111110000 0001112234799999999998764 5999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCC---cceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 157 GICTAVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDW---SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~---~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
+++...+..|...|.++.|+|. ..+|++|+.|++|.++|.|.. .....+. ..+..+.|.|.....+.
T Consensus 276 g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~---------g~VEkv~w~~~se~~f~ 346 (463)
T KOG0270|consen 276 GKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD---------GEVEKVAWDPHSENSFF 346 (463)
T ss_pred CCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec---------cceEEEEecCCCceeEE
Confidence 9999999999999999999994 579999999999999999852 2222222 23889999999887777
Q ss_pred ecCCCCCccccceeecCC-ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 233 THGFQKPRHSAPVLERGE-WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~-~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
++.+++.. +-++.+. .+..+.+..|.++|.+++++... ..++++
T Consensus 347 ~~tddG~v---~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~--------------------------------p~~l~t 391 (463)
T KOG0270|consen 347 VSTDDGTV---YYFDIRNPGKPVWTLKAHDDEISGLSVNIQT--------------------------------PGLLST 391 (463)
T ss_pred EecCCceE---EeeecCCCCCceeEEEeccCCcceEEecCCC--------------------------------Ccceee
Confidence 76554443 3344333 27788899999999999998763 368999
Q ss_pred EeCCCcEEEEeCCCCCceEEeccc-CCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeecccc
Q 040062 312 GSQDRTITVWTTASPRPLFVAKHF-FTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 312 gs~Dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~l 371 (689)
++.|+.|++|++....+..+.... .-+...|+++.|+-. +|+.|+..+.++|||+.+...
T Consensus 392 ~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 392 ASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred ccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999999999866553322211 123466777778754 566788888899999877543
No 151
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=4.1e-20 Score=205.32 Aligned_cols=301 Identities=18% Similarity=0.270 Sum_probs=227.2
Q ss_pred EEEEEEcCCCC-EEEEEe----------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCE----
Q 040062 16 IFSIDVQPGAL-RFATGG----------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY---- 80 (689)
Q Consensus 16 I~si~~spdg~-~Latgs----------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~---- 80 (689)
--.++|+|++. ++|+|. .+.++-||.+.... .....+.+..+. -...-+.++|.+.|..
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~-----~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~Gl 82 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSD-----ESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGL 82 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccC-----cccccccccccc-ccccceeeeecccCCCccce
Confidence 34678999986 566552 35566677665421 111223444443 3446789999997765
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
||.|.+||.|.+||...-... .....+.+...|.+.|..|.|++... .||+|+.||.|.|||+...+.
T Consensus 83 IaGG~edG~I~ly~p~~~~~~-----------~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t 151 (1049)
T KOG0307|consen 83 IAGGLEDGNIVLYDPASIIAN-----------ASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET 151 (1049)
T ss_pred eeccccCCceEEecchhhccC-----------cchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC
Confidence 888999999999998763100 11146677788999999999999865 999999999999999987554
Q ss_pred EEEEe--cCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLR--GHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~--~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
-..+- ...+.|.+++|+.. ...|++++.+|.+.|||++..+.+..+..+... ..+..+.|+|+...-+.....
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~----~~~S~l~WhP~~aTql~~As~ 227 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGR----MHCSVLAWHPDHATQLLVASG 227 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCc----cceeeeeeCCCCceeeeeecC
Confidence 44432 24578999999974 467889999999999999988777776655332 447889999998655444455
Q ss_pred CCCccccceeecCCce-eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC
Q 040062 237 QKPRHSAPVLERGEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD 315 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D 315 (689)
+.....+.+|+.+.-. ....+.+|...|.++.|++. |..++++++.|
T Consensus 228 dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~--------------------------------D~~lllSsgkD 275 (1049)
T KOG0307|consen 228 DDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ--------------------------------DPRLLLSSGKD 275 (1049)
T ss_pred CCCCceeEeecccccCCchhhhcccccceeeeccCCC--------------------------------CchhhhcccCC
Confidence 5556778888865443 33445799999999999987 45799999999
Q ss_pred CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeeccc
Q 040062 316 RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 316 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~ 370 (689)
+.|.+|+.++++.+..+.. ...++..+.|+|... .+++++-||.|.||.+.+..
T Consensus 276 ~~ii~wN~~tgEvl~~~p~-~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 276 NRIICWNPNTGEVLGELPA-QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CCeeEecCCCceEeeecCC-CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9999999999999998876 478999999999766 77778999999999998654
No 152
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=2.4e-18 Score=166.08 Aligned_cols=256 Identities=17% Similarity=0.235 Sum_probs=180.6
Q ss_pred EEEEEEcCCCCEEEEEeC-CCeEEEEeCCcCCCCCCCCcc-cceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 16 IFSIDVQPGALRFATGGG-DHKVRIWNMKSVGKNFENDES-TQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 16 I~si~~spdg~~Latgs~-Dg~V~IWd~~~~~~~~~~~~~-~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
-+.+.|+||-+-+++... ..++++|.+.........-.. ....+..-..|.-.|..+-...+++||++++.|..|+||
T Consensus 135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw 214 (420)
T KOG2096|consen 135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLW 214 (420)
T ss_pred ceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEE
Confidence 478999999977666544 468999987652210000000 001111223466677788888899999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC---CC-----eEEEEEec
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS---TG-----ICTAVLRG 165 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~---~~-----~~~~~l~~ 165 (689)
++. + +.+..+......-+..+.||+|+++++++..-.|++|.+- .| ..+..+++
T Consensus 215 ~lk-G-----------------q~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkG 276 (420)
T KOG2096|consen 215 DLK-G-----------------QLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKG 276 (420)
T ss_pred ecC-C-----------------ceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheecc
Confidence 998 4 4566666666667788999999999999999999999863 22 34567899
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
|.+.|..++|+++...+++.+.||+++|||++-. +.... |...|-.+. .
T Consensus 277 H~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVr-----Y~~~q----------------Dpk~Lk~g~--------~-- 325 (420)
T KOG2096|consen 277 HQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVR-----YEAGQ----------------DPKILKEGS--------A-- 325 (420)
T ss_pred chhheeeeeeCCCcceeEEEecCCcEEEeeccce-----EecCC----------------CchHhhcCC--------c--
Confidence 9999999999999999999999999999998521 00000 000000000 0
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
-+....+.-..+..+|++ +.|+.+ ....|++|..++
T Consensus 326 ----------pl~aag~~p~RL~lsP~g---------------------------------~~lA~s-~gs~l~~~~se~ 361 (420)
T KOG2096|consen 326 ----------PLHAAGSEPVRLELSPSG---------------------------------DSLAVS-FGSDLKVFASED 361 (420)
T ss_pred ----------chhhcCCCceEEEeCCCC---------------------------------cEEEee-cCCceEEEEccc
Confidence 000011122256666665 555543 345799999999
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
++....+...|...|.+++|+++|+++++++ |..++++.
T Consensus 362 g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 362 GKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 9988888899999999999999999999998 77888876
No 153
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.82 E-value=6.9e-19 Score=183.87 Aligned_cols=269 Identities=21% Similarity=0.323 Sum_probs=194.3
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee--ecCCCCcEEEEEEcC-CCCEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT--LRDHFGSVNCVRWAK-HGRYIA 82 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~v~fsp-dg~~La 82 (689)
..|+.|. ..|+.+.|-|....|+++++|.++++||++. .++... +.+|.+.|.+++|.| |...|+
T Consensus 94 k~~~aH~-nAifDl~wapge~~lVsasGDsT~r~Wdvk~-----------s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~ 161 (720)
T KOG0321|consen 94 KKPLAHK-NAIFDLKWAPGESLLVSASGDSTIRPWDVKT-----------SRLVGGRLNLGHTGSVKSECFMPTNPAVFC 161 (720)
T ss_pred ccccccc-ceeEeeccCCCceeEEEccCCceeeeeeecc-----------ceeecceeecccccccchhhhccCCCccee
Confidence 4688999 5999999999778899999999999999987 455444 789999999999999 456889
Q ss_pred EEeCCCeEEEEEcCCCCC--cccc------CCCC--CCCcccceEEEEEecCCCCEEE---EEEcCCCCEEEEEeC-CCe
Q 040062 83 SGSDDQVILIHEKKPGSG--TTEF------GSGE--PPDIENWKVAMTLRGHTADVVD---LNWSPDDSILASGSL-DNT 148 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~--~~~~------~~~~--~~~~~~~~~~~~l~~h~~~V~~---l~~spdg~~Lasgs~-Dg~ 148 (689)
+|+.||.|.|||++-... ...| .... .+....-+....-..|...|.. +.+..|...||+++. |+.
T Consensus 162 tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~ 241 (720)
T KOG0321|consen 162 TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADST 241 (720)
T ss_pred eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcc
Confidence 999999999999986541 1111 0001 0111111233334456666665 556678999999987 999
Q ss_pred EEEEEcCCCeEEEE--------EecC---CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCccee--eccCcccccCCc
Q 040062 149 IHIWNMSTGICTAV--------LRGH---SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAH--RTDGHWAKSLGS 215 (689)
Q Consensus 149 I~vwd~~~~~~~~~--------l~~h---~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~--~~~~~~~~~~~~ 215 (689)
|+|||+++...... +..| .-.+.++..+..|.+|+..+.|++|++|++.+..... .+.++ ...
T Consensus 242 iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~----~~~ 317 (720)
T KOG0321|consen 242 IKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGK----LNS 317 (720)
T ss_pred eEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCc----ccc
Confidence 99999987544332 1223 2357788888889999888889999999998654322 22222 223
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc-eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.+...-..+||+.+++++..+ ...++|..... .....+.+|.-.|++++|.|..
T Consensus 318 sf~vks~lSpd~~~l~SgSsd----~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~--------------------- 372 (720)
T KOG0321|consen 318 SFYVKSELSPDDCSLLSGSSD----EQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSA--------------------- 372 (720)
T ss_pred eeeeeeecCCCCceEeccCCC----cceeeeeecCccCChhhhhCcceEEEEEeecccc---------------------
Confidence 445566789999999998763 34456655443 3445678999999999999884
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
-.-+++++.|..++||++..+
T Consensus 373 -----------~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 373 -----------TTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred -----------CCCceeeccCcceEEEeccCc
Confidence 145667799999999999754
No 154
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.81 E-value=1.3e-18 Score=171.61 Aligned_cols=229 Identities=24% Similarity=0.432 Sum_probs=175.0
Q ss_pred ceeeeeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHG--RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg--~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
+..-...-.|.+.++.++-++-+ .+.++=++.|.|.||++...-....-. .-.......+.+.++.+|...=..|+|
T Consensus 141 P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~-~~~~~~s~~~Pl~t~~ghk~EGy~LdW 219 (440)
T KOG0302|consen 141 PQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEP-GLEVKDSEFRPLFTFNGHKGEGYGLDW 219 (440)
T ss_pred ccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCc-cccccccccCceEEecccCccceeeec
Confidence 44445556799999999988744 577777889999999997542111100 011112445788899999999999999
Q ss_pred cCCCC-EEEEEeCCCeEEEEEcCCCeEE---EEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 134 SPDDS-ILASGSLDNTIHIWNMSTGICT---AVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 134 spdg~-~Lasgs~Dg~I~vwd~~~~~~~---~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
||-.. .|++|.--+.|++|...++... ..+.+|+..|-.|+|+|.. ..|++||-||+|+|||+|.+.....+
T Consensus 220 Sp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~--- 296 (440)
T KOG0302|consen 220 SPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV--- 296 (440)
T ss_pred ccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee---
Confidence 99432 5888888889999999886543 2356799999999999964 68999999999999999875322111
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 209 WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
....|.+.|..+.|+...
T Consensus 297 -----------------------------------------------~~kAh~sDVNVISWnr~~--------------- 314 (440)
T KOG0302|consen 297 -----------------------------------------------STKAHNSDVNVISWNRRE--------------- 314 (440)
T ss_pred -----------------------------------------------EeeccCCceeeEEccCCc---------------
Confidence 124588899999998875
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC---CCceEEecccCCCCeEEEEEccC-CCeEEEEeCCCcEEEE
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS---PRPLFVAKHFFTQSVVDLSWSPD-GYSLFACSLDGTVANF 364 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~DG~I~vw 364 (689)
.+||+|+.||+++|||++. ++++..+. .|..+|+++.|+|. ...|++++.|..|.+|
T Consensus 315 ------------------~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~QitiW 375 (440)
T KOG0302|consen 315 ------------------PLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITIW 375 (440)
T ss_pred ------------------ceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEEE
Confidence 5999999999999999985 45666665 58999999999995 4578888999999999
Q ss_pred Eeecc
Q 040062 365 HFEVK 369 (689)
Q Consensus 365 d~~~~ 369 (689)
|+...
T Consensus 376 DlsvE 380 (440)
T KOG0302|consen 376 DLSVE 380 (440)
T ss_pred Eeecc
Confidence 99753
No 155
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=1e-18 Score=181.62 Aligned_cols=197 Identities=20% Similarity=0.263 Sum_probs=139.9
Q ss_pred eeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 9 VRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
-.|. +.|+.+.|+| +..+||||+.|..|+||.+..... ... ...-..+.+..-.|-|+.|+|...-|...+..
T Consensus 76 ~~H~-d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~---q~L--Sape~~~g~~~~~vE~l~fHpTaDgil~s~a~ 149 (1012)
T KOG1445|consen 76 AAHG-DQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHS---QKL--SAPEIDVGGGNVIVECLRFHPTADGILASGAH 149 (1012)
T ss_pred eccc-ceeeccCccccchhhhhcccCCCeeEEEecCCCcc---ccc--CCcceeecCCceEEEEeecccCcCceEEeccC
Confidence 3565 7999999999 446899999999999999974110 000 01112334445578999999966555555567
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEEecC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAVLRGH 166 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~l~~h 166 (689)
|+++|||+.++ +....+.+|...|.+..|+.||.+|++.+.|..|+|||.+. ++.+....+|
T Consensus 150 g~v~i~D~stq-----------------k~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H 212 (1012)
T KOG1445|consen 150 GSVYITDISTQ-----------------KTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGH 212 (1012)
T ss_pred ceEEEEEcccC-----------------ceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCcccccccc
Confidence 99999999998 67888899999999999999999999999999999999985 6777888888
Q ss_pred CCC-eEEEEEccCCCEEEEEeCC----CeEEEEECCCCcc-eeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 167 SSL-VKGVAWDPIGSFIASQSDD----KTVIIWRTSDWSL-AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 167 ~~~-V~~l~~spdg~~las~s~D----g~I~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.+. =..+.|.-+-..|++.+.+ ..|++||.+.+.. +++++.. .+..+.--.|.||.++++.+
T Consensus 213 ~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld-----~stGvLiPl~DpDt~llfLa 280 (1012)
T KOG1445|consen 213 GGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELD-----SSTGVLIPLYDPDTRLLFLA 280 (1012)
T ss_pred ccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEee-----cccceEeeeecCCCceEEEe
Confidence 753 2346676544466666544 5799999987543 2222211 12224444566666555544
No 156
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=4.7e-18 Score=164.52 Aligned_cols=293 Identities=17% Similarity=0.246 Sum_probs=203.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEc-------CCCCE
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWS-------PDDSI 139 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s-------pdg~~ 139 (689)
-...+.|+|||..|++-+.|..+++|++....... .............++- ....|.+.+|- |+..+
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~-----~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l 125 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSK-----KADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNL 125 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhccc-----CCCCccccccceeEEeccCCEEEEEEeeeccccCCCccce
Confidence 35678999999999999999999999986542111 0001111122222221 23457777775 56779
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEEec--CCC---CeEEEEEccCCCEEEEEeCCCeEEEEEC-CCCcceeeccCccc-cc
Q 040062 140 LASGSLDNTIHIWNMSTGICTAVLRG--HSS---LVKGVAWDPIGSFIASQSDDKTVIIWRT-SDWSLAHRTDGHWA-KS 212 (689)
Q Consensus 140 Lasgs~Dg~I~vwd~~~~~~~~~l~~--h~~---~V~~l~~spdg~~las~s~Dg~I~iwd~-~~~~~~~~~~~~~~-~~ 212 (689)
+++.+.|.-|++||.-+|+....+++ |.. .-.+++|+|||.+|+.|. .+.|++||+ +.+..-........ +.
T Consensus 126 ~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~ 204 (406)
T KOG2919|consen 126 FAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKF 204 (406)
T ss_pred eeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccc
Confidence 99999999999999999998888764 332 345899999999998776 568999999 44433222211111 22
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
.....+.+++|+|-.....+.+++. ..+-++........+.+-+|.+.|+.++|.+++
T Consensus 205 gq~giisc~a~sP~~~~~~a~gsY~---q~~giy~~~~~~pl~llggh~gGvThL~~~edG------------------- 262 (406)
T KOG2919|consen 205 GQKGIISCFAFSPMDSKTLAVGSYG---QRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDG------------------- 262 (406)
T ss_pred cccceeeeeeccCCCCcceeeeccc---ceeeeEecCCCCceeeecccCCCeeeEEeccCc-------------------
Confidence 3345588999999876444444332 233355555555666777999999999999997
Q ss_pred CCcccccCccCCCCcEEEEEeC-CCcEEEEeCCCCC-ceEEecccCCC---CeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTASPR-PLFVAKHFFTQ---SVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~~~-~~~~~~~~h~~---~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+.|++|.. |-.|..||++..+ ++..+.. |.. .-.-+...|++++|++|+.||.|++||++
T Consensus 263 --------------n~lfsGaRk~dkIl~WDiR~~~~pv~~L~r-hv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk 327 (406)
T KOG2919|consen 263 --------------NKLFSGARKDDKILCWDIRYSRDPVYALER-HVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLK 327 (406)
T ss_pred --------------CeecccccCCCeEEEEeehhccchhhhhhh-hccCccceEEEecCCCCceeeccCCCccEEEEecC
Confidence 67777765 6789999998654 4444443 322 22345567899999999999999999997
Q ss_pred c-cccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 368 V-KELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 368 ~-~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
. ++.. ..++.+...++.++++|--.++|+++.....
T Consensus 328 ~~gn~~-------------sv~~~~sd~vNgvslnP~mpilatssGqr~f 364 (406)
T KOG2919|consen 328 DLGNEV-------------SVTGNYSDTVNGVSLNPIMPILATSSGQRIF 364 (406)
T ss_pred CCCCcc-------------cccccccccccceecCcccceeeeccCceee
Confidence 6 4322 4556677789999999999999988765555
No 157
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=1.2e-17 Score=181.42 Aligned_cols=305 Identities=19% Similarity=0.245 Sum_probs=221.8
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|. ..++|.++||+++++|+|..||.|.+|.--.. .......+.+.-|...|++++|+++|.+|+||+..|.
T Consensus 203 ~Ht-f~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-------~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~V 274 (792)
T KOG1963|consen 203 HHT-FNITCVALSPNERYLAAGDSDGRILVWRDFGS-------SDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGV 274 (792)
T ss_pred hhc-ccceeEEeccccceEEEeccCCcEEEEecccc-------ccccccceEEEecccccceeEEecCCceEeecccceE
Confidence 344 57899999999999999999999999974321 1123445667789999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec----
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG---- 165 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~---- 165 (689)
+.+|.+.++. .+-+..-...|..+.+|||+.+.+....|+.|.+..+.+.+....+.+
T Consensus 275 Lv~Wq~~T~~------------------kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~ 336 (792)
T KOG1963|consen 275 LVLWQLETGK------------------KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP 336 (792)
T ss_pred EEEEeecCCC------------------cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC
Confidence 9999999873 333445678899999999999999999999999998876555444432
Q ss_pred -------CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc-----ccCCcccEEEEEEcCCCCeEEEe
Q 040062 166 -------HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA-----KSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 166 -------h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~-----~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
..+-.+.++++|.-+.++-.+..|.|++||+-+...+..+..... .......++.++.+-.|+++++.
T Consensus 337 ~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~ 416 (792)
T KOG1963|consen 337 TPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATL 416 (792)
T ss_pred CccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEe
Confidence 245577889999777888888999999999988777665543211 11233457788888889999987
Q ss_pred cCCCC------CccccceeecCCceeeee-----ecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 234 HGFQK------PRHSAPVLERGEWAATFD-----FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 234 ~~~~~------~~~~~~i~~~~~~~~~~~-----l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
..... ....+++|........+. ...|...+...+|.+..
T Consensus 417 E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~----------------------------- 467 (792)
T KOG1963|consen 417 EARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPT----------------------------- 467 (792)
T ss_pred eeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCc-----------------------------
Confidence 54322 134455665443333222 23566666665555432
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCC------Cc---eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec-cccc
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASP------RP---LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV-KELG 372 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~------~~---~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~-~~l~ 372 (689)
....+++++.||.++||-+... .. ...+...|..+++.++|+.||..| +++.|++|.+||..+ .++.
T Consensus 468 --rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~~~~l~ 544 (792)
T KOG1963|consen 468 --RSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDTKNELL 544 (792)
T ss_pred --ccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCChhhhh
Confidence 1137899999999999988322 21 122233568899999999999654 566688999999988 4443
No 158
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.80 E-value=3.8e-16 Score=168.21 Aligned_cols=321 Identities=26% Similarity=0.425 Sum_probs=240.2
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccce-eeeeecCCC-CcEEEEEE-cCCCC-EEEE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR-LLATLRDHF-GSVNCVRW-AKHGR-YIAS 83 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~-~~~~l~~h~-~~V~~v~f-spdg~-~Las 83 (689)
+..|. ..|.++.|.+.+..++.++.|+.+.+|+... .. .+..+..+. ..+..+.+ ++++. +++.
T Consensus 61 ~~~~~-~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 61 LRGHE-DSITSIAFSPDGELLLSGSSDGTIKLWDLDN-----------GEKLIKSLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeecc-ceEEEEEECCCCcEEEEecCCCcEEEEEcCC-----------CceeEEEEeccCCCceeeEEEECCCcceEEec
Confidence 45677 6999999999999999999999999999986 32 566666544 37777777 88887 5555
Q ss_pred EeC-CCeEEEEEcCC-CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCeEE
Q 040062 84 GSD-DQVILIHEKKP-GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIHIWNMSTGICT 160 (689)
Q Consensus 84 gs~-Dg~I~iwdl~~-~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~~~~~~ 160 (689)
.+. |+.+.+|+... . .....+..|...|.+++|++++.++++++. |+.+++|++..+..+
T Consensus 129 ~~~~d~~~~~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (466)
T COG2319 129 SSSLDGTVKLWDLSTPG-----------------KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL 191 (466)
T ss_pred cCCCCccEEEEEecCCC-----------------eEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceE
Confidence 455 99999999986 3 677888899999999999999998888885 999999999998999
Q ss_pred EEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCccee-eccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 161 AVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAH-RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
..+.+|...|.+++|+|++. ++++++.|+.|++||...+.... .+..+... . ...|++++.+++++..
T Consensus 192 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~--- 261 (466)
T COG2319 192 STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS------V-VSSFSPDGSLLASGSS--- 261 (466)
T ss_pred EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc------e-eEeECCCCCEEEEecC---
Confidence 99999999999999999998 55555899999999988766666 45444332 1 1289999977775544
Q ss_pred CccccceeecCCcee-eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 239 PRHSAPVLERGEWAA-TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~-~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
...+.+|+...... ...+.+|...+.++.|+|.. ..+++++.|+.
T Consensus 262 -d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------------~~~~~~~~d~~ 307 (466)
T COG2319 262 -DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDG---------------------------------KLLASGSSDGT 307 (466)
T ss_pred -CCcEEEeeecCCCcEEEEEecCCccEEEEEECCCC---------------------------------CEEEEeeCCCc
Confidence 45566776654443 33336788999999998854 56666888989
Q ss_pred EEEEeCCCCCceEEec-ccCCCCeEEEEEccCCCeEEEE-eCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCce
Q 040062 318 ITVWTTASPRPLFVAK-HFFTQSVVDLSWSPDGYSLFAC-SLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRL 395 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sg-s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I 395 (689)
+.+||........... ..|...+..+.|.+++..++.+ ..|+.+.+|++....... ... ....+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------------~~~--~~~~~ 373 (466)
T COG2319 308 VRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLK------------TLE--GHSNV 373 (466)
T ss_pred EEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeE------------Eec--CCceE
Confidence 9999988877666554 3456679999994343566665 688999999987765111 111 11126
Q ss_pred eeeecCchhhhhHh-hccccce
Q 040062 396 ANLAETPAQLLLEA-ASAKETT 416 (689)
Q Consensus 396 ~~l~~Spdg~~Las-~s~DG~v 416 (689)
..+.+++ ...+.. +..++.+
T Consensus 374 ~~~~~~~-~~~~~~~~~~~~~~ 394 (466)
T COG2319 374 LSVSFSP-DGRVVSSGSTDGTV 394 (466)
T ss_pred EEEEECC-CCCEEEEecCCCce
Confidence 7888887 533333 4566666
No 159
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.80 E-value=1.8e-17 Score=165.17 Aligned_cols=303 Identities=18% Similarity=0.217 Sum_probs=200.1
Q ss_pred CCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 66 FGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 66 ~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
..+|..+.|.+++. .||+|+.|..|+||.+..+.... .....+....+..|...|+++.|+|+|.+|++|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~--------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~ 84 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGG--------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG 84 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCC--------CceeEEEeecccCCcceeEEEEEcCCcCeeeecC
Confidence 35799999999776 99999999999999998753211 0023366778889999999999999999999999
Q ss_pred CCCeEEEEEcC--------C--------CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 145 LDNTIHIWNMS--------T--------GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 145 ~Dg~I~vwd~~--------~--------~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
.+|.|.+|-.. + ....+.+++|...|..++|+|++.++++++.|..+++||+..++....+..+
T Consensus 85 D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh 164 (434)
T KOG1009|consen 85 DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDH 164 (434)
T ss_pred CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccc
Confidence 99999999765 2 2345567889999999999999999999999999999999999999988877
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee----eeecCC--CCCEEEEEEcCCcccccccccc
Q 040062 209 WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT----FDFLGH--NAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~h--~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
.. ++..++|.|.++++++-+.+.........+........ ....++ .+.++.+ |+.+
T Consensus 165 ~~------yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rL-fhDe---------- 227 (434)
T KOG1009|consen 165 EH------YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRL-FHDE---------- 227 (434)
T ss_pred cc------ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeee-eecC----------
Confidence 44 48899999999999987765522211111111000000 000011 1111111 1000
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeC---------CCcEEEEeCCC-CCceEEecccCCCCeEEEEEcc-----
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ---------DRTITVWTTAS-PRPLFVAKHFFTQSVVDLSWSP----- 347 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~---------Dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~sp----- 347 (689)
..........+.++|.++++... -+..++|+-.. .++...+.. .......+.|+|
T Consensus 228 ---------TlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~-~~k~~lavr~~pVy~el 297 (434)
T KOG1009|consen 228 ---------TLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPS-PKKPALAVRFSPVYYEL 297 (434)
T ss_pred ---------chhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCC-CCcceEEEEeeeeEEEe
Confidence 00011112333455566665432 12345554432 234443332 244455555554
Q ss_pred -------------CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcccc
Q 040062 348 -------------DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKE 414 (689)
Q Consensus 348 -------------dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG 414 (689)
-+-.+++++ ...|+|||.++-+....+. .-|-..|+.++||+||..|+..|.||
T Consensus 298 rp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~------------nihy~~iTDiaws~dg~~l~vSS~DG 364 (434)
T KOG1009|consen 298 RPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVD------------NIHYSAITDIAWSDDGSVLLVSSTDG 364 (434)
T ss_pred ccccccccccccccceEEEEee-cceEEEeccccccceEEEe------------eeeeeeecceeecCCCcEEEEeccCC
Confidence 223345555 5589999988755443322 12445799999999999999999999
Q ss_pred ce
Q 040062 415 TT 416 (689)
Q Consensus 415 ~v 416 (689)
-.
T Consensus 365 yC 366 (434)
T KOG1009|consen 365 FC 366 (434)
T ss_pred ce
Confidence 88
No 160
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.80 E-value=7.7e-19 Score=181.59 Aligned_cols=273 Identities=22% Similarity=0.221 Sum_probs=193.2
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
..|. +.|..+.|+|....|++++.||.+.+|+++. .........+.+.+|++|.++|.|++..++++++.+|+.||
T Consensus 291 ~s~~-d~ir~l~~~~sep~lit~sed~~lk~WnLqk---~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 291 RSHD-DCIRALAFHPSEPVLITASEDGTLKLWNLQK---AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred ecch-hhhhhhhcCCCCCeEEEeccccchhhhhhcc---cCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 4566 6899999999999999999999999999944 22233345788999999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS- 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~- 167 (689)
+|+.|++..+.. .+.+.++ -.....+.||+..|+.+++|.....|++++.||+++.|+...... .++....
T Consensus 367 ~I~~w~~p~n~d--p~ds~dp-----~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e 438 (577)
T KOG0642|consen 367 TIRCWNLPPNQD--PDDSYDP-----SVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKE 438 (577)
T ss_pred eeeeeccCCCCC--cccccCc-----chhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccc
Confidence 999998873311 1111111 134567889999999999999999999999999999999876655 3333222
Q ss_pred -CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 168 -SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 168 -~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
+.-..+.|- ...++-...+.....+++.+.+....+...... ....
T Consensus 439 ~g~Plsvd~~--ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~-----------------------~~~~-------- 485 (577)
T KOG0642|consen 439 HGYPLSVDRT--SSRPAHSLASFRFGYTSIDDMEVVSDLLIFESS-----------------------ASPG-------- 485 (577)
T ss_pred cCCcceEeec--cchhHhhhhhcccccccchhhhhhhheeecccc-----------------------CCCc--------
Confidence 222334433 222222222334455544443332222110000 0000
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
......+..+.++|.. .+.+++..|+.|+++|..++
T Consensus 486 -----------~~~~~~in~vVs~~~~---------------------------------~~~~~~hed~~Ir~~dn~~~ 521 (577)
T KOG0642|consen 486 -----------PRRYPQINKVVSHPTA---------------------------------DITFTAHEDRSIRFFDNKTG 521 (577)
T ss_pred -----------ccccCccceEEecCCC---------------------------------CeeEecccCCceeccccccc
Confidence 0001233445555554 78899999999999999999
Q ss_pred CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
.++.... .|...++++++.|+|-+|++++.||.+++|++.....
T Consensus 522 ~~l~s~~-a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 522 KILHSMV-AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred ccchhee-eccceecceeecCCCceEEeecCCceeehhhccchhe
Confidence 9988765 4788999999999999999999999999999876544
No 161
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.80 E-value=7.7e-18 Score=160.98 Aligned_cols=252 Identities=22% Similarity=0.350 Sum_probs=187.0
Q ss_pred cCceeeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC---CCCE
Q 040062 5 KPSWVRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK---HGRY 80 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp---dg~~ 80 (689)
|+.-.+|. ..|.++.|-| |.-++.+++-|.++++||..+ .+....|. ..+.|+.-+++| .-.+
T Consensus 94 ~~h~~~Hk-y~iss~~WyP~DtGmFtssSFDhtlKVWDtnT-----------lQ~a~~F~-me~~VYshamSp~a~sHcL 160 (397)
T KOG4283|consen 94 KQHENGHK-YAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT-----------LQEAVDFK-MEGKVYSHAMSPMAMSHCL 160 (397)
T ss_pred ccCCccce-eeeeeeEEeeecCceeecccccceEEEeeccc-----------ceeeEEee-cCceeehhhcChhhhcceE
Confidence 34444677 7999999999 556888899999999999987 45555554 677899999998 3457
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC-e
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTG-I 158 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~-~ 158 (689)
+|+|..|-.|++-|+.++ ...+.+.+|...|.++.|+|... .|++|+.||.|++||++.- .
T Consensus 161 iA~gtr~~~VrLCDi~SG-----------------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg 223 (397)
T KOG4283|consen 161 IAAGTRDVQVRLCDIASG-----------------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG 223 (397)
T ss_pred EEEecCCCcEEEEeccCC-----------------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc
Confidence 888888999999999998 67889999999999999999877 7889999999999999753 3
Q ss_pred EEEEE--------------ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEc
Q 040062 159 CTAVL--------------RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 159 ~~~~l--------------~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
+...+ ..|.+.|.+++|..++.++++.+.|..+++|+..++.......++........+-..+. +
T Consensus 224 cf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~ 302 (397)
T KOG4283|consen 224 CFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-S 302 (397)
T ss_pred eeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-e
Confidence 33333 35778999999999999999999999999999987764433222211111111111122 2
Q ss_pred CCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 225 PCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
-+...++..-. ...+.+++..+......+..|-..+.|..|.|+-
T Consensus 303 ~~s~vfv~~p~----~~~lall~~~sgs~ir~l~~h~k~i~c~~~~~~f------------------------------- 347 (397)
T KOG4283|consen 303 MDSDVFVLFPN----DGSLALLNLLEGSFVRRLSTHLKRINCAAYRPDF------------------------------- 347 (397)
T ss_pred cccceEEEEec----CCeEEEEEccCceEEEeeecccceeeEEeecCch-------------------------------
Confidence 22222222111 1455666777777777788898889999998885
Q ss_pred CCcEEEEEeCCCcEEEEeCC
Q 040062 305 PYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~ 324 (689)
+.+.+|..|+.|..|-..
T Consensus 348 --q~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 348 --EQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred --hhhhccccCCcccccccc
Confidence 678889999999999763
No 162
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.9e-18 Score=165.22 Aligned_cols=297 Identities=14% Similarity=0.159 Sum_probs=198.1
Q ss_pred eEEEEEEcCC-------CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEe
Q 040062 15 QIFSIDVQPG-------ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGS 85 (689)
Q Consensus 15 ~I~si~~spd-------g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs 85 (689)
+=+|+.+++. ...+|++..+|.|+|||..+ ++.+..+++|...++.++|.. ....+.+|+
T Consensus 23 ~~~~Lk~~~q~~~~~~~e~~vav~lSngsv~lyd~~t-----------g~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s 91 (376)
T KOG1188|consen 23 EDFCLKYDIQEQVKDGFETAVAVSLSNGSVRLYDKGT-----------GQLLEEFKGPPATTNGVRFISCDSPHGVISCS 91 (376)
T ss_pred ccceeeccchhhhccCcceeEEEEecCCeEEEEeccc-----------hhhhheecCCCCcccceEEecCCCCCeeEEec
Confidence 3456666432 25699999999999999987 889999999999999999987 467899999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCeE-
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASGS----LDNTIHIWNMSTGIC- 159 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasgs----~Dg~I~vwd~~~~~~- 159 (689)
.||+|++||++..... .......|. .+..+++....++.+++|. .|-.|.+||++..+.
T Consensus 92 sDG~Vr~wD~Rs~~e~---------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~ 156 (376)
T KOG1188|consen 92 SDGTVRLWDIRSQAES---------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL 156 (376)
T ss_pred cCCeEEEEEeecchhh---------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch
Confidence 9999999999986432 222233344 5677777777778888875 456899999998766
Q ss_pred EEE-EecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC--CeEEEecC
Q 040062 160 TAV-LRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG--HFITTTHG 235 (689)
Q Consensus 160 ~~~-l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg--~~l~~~~~ 235 (689)
+.. ...|...|++++|+|. .++|++||.||.|.+||+........+... ....+.|.++.|..++ +....++.
T Consensus 157 l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~v---iN~~sSI~~igw~~~~ykrI~clTH~ 233 (376)
T KOG1188|consen 157 LRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHV---INHGSSIHLIGWLSKKYKRIMCLTHM 233 (376)
T ss_pred hhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHh---hcccceeeeeeeecCCcceEEEEEcc
Confidence 443 4579999999999995 589999999999999999754221111110 1123348899999888 43333322
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ- 314 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~- 314 (689)
....+|+.........+... .+.+. ..+......+.+......+..+++.++.
T Consensus 234 -----Etf~~~ele~~~~~~~~~~~-----~~~~~----------------d~r~~~~~dY~I~~~~~~~~~~~~l~g~~ 287 (376)
T KOG1188|consen 234 -----ETFAIYELEDGSEETWLENP-----DVSAD----------------DLRKEDNCDYVINEHSPGDKDTCALAGTD 287 (376)
T ss_pred -----CceeEEEccCCChhhcccCc-----cchhh----------------hHHhhhhhhheeecccCCCcceEEEeccc
Confidence 23344544333322221110 00000 0000011122222222234456666555
Q ss_pred CCcEEEEeCC------CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 315 DRTITVWTTA------SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 315 Dg~I~iwd~~------~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
-+...++-+. ....+..++.+|..-|.++.|...+.+|++|++||.+.+|..
T Consensus 288 ~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 288 SNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred cCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 4555555433 235566777778888999999999999999999999999985
No 163
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.79 E-value=2e-17 Score=160.11 Aligned_cols=292 Identities=17% Similarity=0.207 Sum_probs=207.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCC-CCcccceeeeeec-CCCCcEEEEEEc-------CCCCEEEEEeC
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFE-NDESTQRLLATLR-DHFGSVNCVRWA-------KHGRYIASGSD 86 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~-~~~~~~~~~~~l~-~h~~~V~~v~fs-------pdg~~Lasgs~ 86 (689)
...+.|+|||.-|++-+.|..+++|++....-... ..........+++ .....|...+|- |+..++|+.+.
T Consensus 52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence 45788999999999999999999999875311100 0001111111121 234568888885 57789999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEEc-CCCeEEEE
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT---ADVVDLNWSPDDSILASGSLDNTIHIWNM-STGICTAV 162 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~l~~spdg~~Lasgs~Dg~I~vwd~-~~~~~~~~ 162 (689)
|.-|++||.-+++...++. ...|. ....+|+|+|||.+|++|. ...|++||+ +.|.....
T Consensus 132 ~~PIh~wdaftG~lraSy~---------------~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~v 195 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYR---------------AYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPV 195 (406)
T ss_pred cCceeeeeccccccccchh---------------hhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcc
Confidence 9999999999985433321 11233 2356899999999998765 689999999 44432221
Q ss_pred --E-----ecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 163 --L-----RGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 163 --l-----~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
. .+..+-|.+++|+|. .+.++.++...++-||.-....++..+.++... |+.++|.++|+.|+++.
T Consensus 196 y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gG------vThL~~~edGn~lfsGa 269 (406)
T KOG2919|consen 196 YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGG------VTHLQWCEDGNKLFSGA 269 (406)
T ss_pred hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCC------eeeEEeccCcCeecccc
Confidence 1 123678899999995 469999999999999999888888888877655 99999999999999876
Q ss_pred CCCCCccccceeecCC-ceeeeeecCCCC-CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 235 GFQKPRHSAPVLERGE-WAATFDFLGHNA-PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 235 ~~~~~~~~~~i~~~~~-~~~~~~l~~h~~-~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
.. ...+..|+.+. ....+.+..|.+ .-..|.|.-+ +.+++|++|
T Consensus 270 Rk---~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld-------------------------------~~~~~LasG 315 (406)
T KOG2919|consen 270 RK---DDKILCWDIRYSRDPVYALERHVGDTNQRILFDLD-------------------------------PKGEILASG 315 (406)
T ss_pred cC---CCeEEEEeehhccchhhhhhhhccCccceEEEecC-------------------------------CCCceeecc
Confidence 53 23445666543 334455666655 3344555433 256899999
Q ss_pred eCCCcEEEEeCCC-CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 313 SQDRTITVWTTAS-PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 313 s~Dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+.||.|++||++. +..+..+. .|...++.++++|--.++++++.. ++|...
T Consensus 316 ~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~mpilatssGq---r~f~~~ 367 (406)
T KOG2919|consen 316 DTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIMPILATSSGQ---RIFKYP 367 (406)
T ss_pred CCCccEEEEecCCCCCcccccc-cccccccceecCcccceeeeccCc---eeecCC
Confidence 9999999999998 55555544 468899999999998888888744 444443
No 164
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.79 E-value=1.5e-19 Score=193.40 Aligned_cols=281 Identities=20% Similarity=0.248 Sum_probs=218.9
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
..++|. ..|+|..|...|.++++|+.|..|+||.+++ ..++....+|.+.|+.++.+.+..++++++.
T Consensus 185 rLlgH~-naVyca~fDrtg~~Iitgsdd~lvKiwS~et-----------~~~lAs~rGhs~ditdlavs~~n~~iaaaS~ 252 (1113)
T KOG0644|consen 185 RLLGHR-NAVYCAIFDRTGRYIITGSDDRLVKIWSMET-----------ARCLASCRGHSGDITDLAVSSNNTMIAAASN 252 (1113)
T ss_pred HHHhhh-hheeeeeeccccceEeecCccceeeeeeccc-----------hhhhccCCCCccccchhccchhhhhhhhccc
Confidence 456888 6999999999999999999999999999987 8999999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE---
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL--- 163 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l--- 163 (689)
|..|++|.+..+ ..+..+++|++.|++|+|+|-. +.+.||++++||.+ ...+...
T Consensus 253 D~vIrvWrl~~~-----------------~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp 310 (1113)
T KOG0644|consen 253 DKVIRVWRLPDG-----------------APVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRP 310 (1113)
T ss_pred CceEEEEecCCC-----------------chHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCC
Confidence 999999999988 5777889999999999999854 77899999999987 1111111
Q ss_pred -e-cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC-eEEEecCCCCCc
Q 040062 164 -R-GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH-FITTTHGFQKPR 240 (689)
Q Consensus 164 -~-~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~~~~~~ 240 (689)
+ .....+..+.|...+.-++|++.|+.-..|.+........ . +.-+.++.+-. +.+++ ...
T Consensus 311 ~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~---------~---lif~t~ssd~~~~~~~a----r~~ 374 (1113)
T KOG0644|consen 311 LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSN---------L---LIFVTRSSDLSSIVVTA----RND 374 (1113)
T ss_pred CCcccccceeeeeccccccccccccCCcccccchhhHhhhhcc---------c---eEEEeccccccccceee----eee
Confidence 0 1235667778888888899999999998887642111100 0 00111111211 11111 113
Q ss_pred cccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 241 HSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
....+|+.........+.+|...+..+.++|.. ..+..+++.||...|
T Consensus 375 ~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn--------------------------------~ri~msag~dgst~i 422 (1113)
T KOG0644|consen 375 HRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN--------------------------------PRIAMSAGYDGSTII 422 (1113)
T ss_pred eEeeeeecccchhhhhhcccccceeeeeecCCC--------------------------------cHhhhhccCCCceEe
Confidence 344567777777777788999999999999984 356778999999999
Q ss_pred EeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 321 WTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 321 wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
||+-.+.++.....+|. .+.+..||+||..++....-|.++|+....++
T Consensus 423 wdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 423 WDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 99999999988887644 57788999999999999888999998876544
No 165
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.79 E-value=2.4e-17 Score=163.47 Aligned_cols=228 Identities=20% Similarity=0.295 Sum_probs=173.4
Q ss_pred eeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 57 RLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
...-.+.+|.+.|..++|+| +...||||++|.+|.||++..+.....+. +.+..|.+|...|--++|+|
T Consensus 72 ~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt----------epvv~L~gH~rrVg~V~wHP 141 (472)
T KOG0303|consen 72 ASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT----------EPVVELYGHQRRVGLVQWHP 141 (472)
T ss_pred CCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc----------cceEEEeecceeEEEEeecc
Confidence 34456789999999999999 67789999999999999998764332221 67889999999999999999
Q ss_pred CC-CEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 136 DD-SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 136 dg-~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
.- +.|++++.|+.|.+||+.+++.+..+. |...|.+++|+.+|.+|++.+.|..|+|||.++++.+..-..|...
T Consensus 142 tA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~--- 217 (472)
T KOG0303|consen 142 TAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGA--- 217 (472)
T ss_pred cchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCC---
Confidence 74 589999999999999999999999988 9999999999999999999999999999999999998877554332
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeec--CCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFL--GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~--~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
.-.++.|..+|. +++++-.......+.+|+.........+. .....|.---|.++.
T Consensus 218 --k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt------------------- 275 (472)
T KOG0303|consen 218 --KPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDT------------------- 275 (472)
T ss_pred --CcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCC-------------------
Confidence 245677888998 44443333344566677665544332221 122333333444442
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEec
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK 333 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~ 333 (689)
.-+.++|-.|+.|+.|.+....+...+.
T Consensus 276 -------------~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 276 -------------SIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred -------------CEEEEEecCCcceEEEEecCCCceeEEe
Confidence 1245566779999999998877655443
No 166
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.79 E-value=7e-18 Score=160.93 Aligned_cols=264 Identities=23% Similarity=0.364 Sum_probs=188.8
Q ss_pred ecCceeeecCceEEEEEEcCCCCE-EEEEeCC-------CeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALR-FATGGGD-------HKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRW 74 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~-Latgs~D-------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~f 74 (689)
.+..|..|. ..|+.++-+|-.++ |+|+..+ ..+-||.+...... ......+++..+. .+-+.|.|+.|
T Consensus 55 ~skvf~h~a-gEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~--S~~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 55 LSKVFFHHA-GEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQ--SNSSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred hhhhhhcCC-cceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCc--cccchhhHhhcCCHHHhCceeeEEE
Confidence 344555566 59999999996654 5554321 35789998753222 1223456666665 56779999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCC-ccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--CCCEEEEEeCCCeEEE
Q 040062 75 AKHGRYIASGSDDQVILIHEKKPGSG-TTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--DDSILASGSLDNTIHI 151 (689)
Q Consensus 75 spdg~~Lasgs~Dg~I~iwdl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~~Lasgs~Dg~I~v 151 (689)
.|++..|++-. |..|.+|+++.... ....... .-..|....++-+|+| |++.+++. .|+++..
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss------------~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~ 197 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSS------------ESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQF 197 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeeccc------------ccccccceecccccCCCCccceEEEe-CCCcEEE
Confidence 99999999876 78899999998754 1211111 1112566678889998 56677665 4899999
Q ss_pred EEcCCCeEEEEE-ecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCe
Q 040062 152 WNMSTGICTAVL-RGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHF 229 (689)
Q Consensus 152 wd~~~~~~~~~l-~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 229 (689)
||+++..+...+ ..|...|..+.|+|+-. +|+++++||.|+|||.+.-+.
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~---------------------------- 249 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF---------------------------- 249 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc----------------------------
Confidence 999998776665 46889999999999764 688999999999999975321
Q ss_pred EEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE
Q 040062 230 ITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI 309 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 309 (689)
....+.+|...|.++.|+|.. ..+|
T Consensus 250 -----------------------pv~el~~HsHWvW~VRfn~~h--------------------------------dqLi 274 (370)
T KOG1007|consen 250 -----------------------PVQELPGHSHWVWAVRFNPEH--------------------------------DQLI 274 (370)
T ss_pred -----------------------cccccCCCceEEEEEEecCcc--------------------------------ceEE
Confidence 112456788899999999874 4788
Q ss_pred EEEeCCCcEEEEeCCCC------------------------CceE----EecccCCCCeEEEEEccCCCe-EEEEeCCCc
Q 040062 310 AIGSQDRTITVWTTASP------------------------RPLF----VAKHFFTQSVVDLSWSPDGYS-LFACSLDGT 360 (689)
Q Consensus 310 asgs~Dg~I~iwd~~~~------------------------~~~~----~~~~~h~~~V~~l~~spdg~~-L~sgs~DG~ 360 (689)
++|+.|..|.+|...+- +++. .....|..+|++++||.-..+ +++-+.||.
T Consensus 275 Ls~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGR 354 (370)
T KOG1007|consen 275 LSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGR 354 (370)
T ss_pred EecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCce
Confidence 99999999999865421 1111 122347889999999986665 556899999
Q ss_pred EEEEEee
Q 040062 361 VANFHFE 367 (689)
Q Consensus 361 I~vwd~~ 367 (689)
+.|=++.
T Consensus 355 viIs~V~ 361 (370)
T KOG1007|consen 355 VIISSVP 361 (370)
T ss_pred EEeecCC
Confidence 9886653
No 167
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=1.9e-17 Score=163.56 Aligned_cols=305 Identities=14% Similarity=0.180 Sum_probs=205.5
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Las 83 (689)
|....+|.| .|.++.|+.++++|++|+.|..+++|+++..- ....++.+.... .|...|.|++|....++|.+
T Consensus 49 qKD~~~H~G-CiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~-----~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~S 122 (609)
T KOG4227|consen 49 QKDVREHTG-CINALQFSHNDRFLASGGDDMHGRVWNVDELM-----VRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYS 122 (609)
T ss_pred hhhhhhhcc-ccceeeeccCCeEEeecCCcceeeeechHHHH-----hhcCCCCceeccCccccceEEEEEccCCeeEec
Confidence 344568996 99999999999999999999999999987421 111234454443 45689999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-E
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT---ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-C 159 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~-~ 159 (689)
|..+++|.+.|+++. +.+..+ .|. +.|..+..+|-.+.|++.+.++.|.+||.+... .
T Consensus 123 G~~~~~VI~HDiEt~-----------------qsi~V~-~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~ 184 (609)
T KOG4227|consen 123 GERWGTVIKHDIETK-----------------QSIYVA-NENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNP 184 (609)
T ss_pred CCCcceeEeeecccc-----------------eeeeee-cccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCC
Confidence 999999999999986 233333 344 489999999999999999999999999998754 1
Q ss_pred --EEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecC
Q 040062 160 --TAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 160 --~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+..+.........+.|+|.. .+|++.+..+-+-+||.+...........+... ...+....+.|+|.|+.+.+...
T Consensus 185 ~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR 264 (609)
T KOG4227|consen 185 ISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR 264 (609)
T ss_pred CceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc
Confidence 22222234566788999954 688899988999999987543221111111111 11223467789999998887543
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEE--cCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKF--NHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~f--sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
...+. .+.+ |......+.| +|+++.-. ..+..+.+. +...+++|+
T Consensus 265 ~~~P~-------------~~D~--~S~R~~V~k~D~N~~GY~N~-----------------~T~KS~~F~-~D~~v~tGS 311 (609)
T KOG4227|consen 265 GKCPL-------------YFDF--ISQRCFVLKSDHNPNGYCNI-----------------KTIKSMTFI-DDYTVATGS 311 (609)
T ss_pred cCCCE-------------Eeee--ecccceeEeccCCCCcceee-----------------eeeeeeeee-cceeeeccC
Confidence 22211 1112 2222222222 23332110 000011111 224589999
Q ss_pred CCCcEEEEeCCCC----------C------------ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 314 QDRTITVWTTASP----------R------------PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 314 ~Dg~I~iwd~~~~----------~------------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+-.|++|.+... . .......+|..-++.+.|+|...+|++.+-...+++|.-
T Consensus 312 D~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 312 DHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred cccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence 9999999987521 1 012233468888999999999999999999999999974
No 168
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.78 E-value=1.3e-17 Score=159.04 Aligned_cols=292 Identities=17% Similarity=0.254 Sum_probs=208.6
Q ss_pred CCCEEEEEeC----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCC-------CeEE
Q 040062 24 GALRFATGGG----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDD-------QVIL 91 (689)
Q Consensus 24 dg~~Latgs~----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~D-------g~I~ 91 (689)
|.-.|++|.. |+.|.+.+++... ..-.-..|..|.+.|..++-+| +.+.|+++..+ ..+-
T Consensus 25 d~icFlvgTnslK~dNqVhll~~d~e~--------s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aa 96 (370)
T KOG1007|consen 25 DHICFLVGTNSLKEDNQVHLLRLDSEG--------SELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAA 96 (370)
T ss_pred cceEEEEeccccCCcceeEEEEecCcc--------chhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEE
Confidence 3445666653 6888888887521 1233355677899999999999 55677776543 2477
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-EEEEe-----
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC-TAVLR----- 164 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~-~~~l~----- 164 (689)
||.+...... .+...|+++..+. .+-+.|.|+.|.|++..|++-. |..|.+|++..+.. +..+.
T Consensus 97 iw~ipe~~~~--------S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~ 167 (370)
T KOG1007|consen 97 IWQIPEPLGQ--------SNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESA 167 (370)
T ss_pred EEecccccCc--------cccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccc
Confidence 9998765321 2233456666665 4556899999999999888876 89999999987665 33332
Q ss_pred cCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 GHSSLVKGVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 ~h~~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.|....++-+|+| +++.+++.+ |+++..||+++.+....+.
T Consensus 168 e~~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~------------------------------------ 210 (370)
T KOG1007|consen 168 EMRHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIE------------------------------------ 210 (370)
T ss_pred cccceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchh------------------------------------
Confidence 2556677889998 678887765 7799999999766554433
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
..|...|..+.|+|+. ..+|++|+.||.|+|||
T Consensus 211 ---------------dAHgq~vrdlDfNpnk--------------------------------q~~lvt~gDdgyvriWD 243 (370)
T KOG1007|consen 211 ---------------DAHGQRVRDLDFNPNK--------------------------------QHILVTCGDDGYVRIWD 243 (370)
T ss_pred ---------------hhhcceeeeccCCCCc--------------------------------eEEEEEcCCCccEEEEe
Confidence 2366678889999985 26899999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccC-CCeEEEEeCCCcEEEEEeeccccccc---------cChHHHHH---HH----H
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPD-GYSLFACSLDGTVANFHFEVKELGHR---------LSDAELDE---LK----R 385 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spd-g~~L~sgs~DG~I~vwd~~~~~l~~~---------l~~~~~~~---~~----~ 385 (689)
++..+........|...|.++.|+|. .++|++++.|..|.+|....-..... ..++...+ .+ .
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l 323 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQL 323 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccc
Confidence 99776555555678999999999994 57888999999999998654221111 01111111 11 1
Q ss_pred hccCCccCceeeeecCc-hhhhhHhhccccce
Q 040062 386 SRYGDVRGRLANLAETP-AQLLLEAASAKETT 416 (689)
Q Consensus 386 ~~~g~~~~~I~~l~~Sp-dg~~Las~s~DG~v 416 (689)
..|..|.+.|++++||. |--++|+-|.||.+
T Consensus 324 ~tydehEDSVY~~aWSsadPWiFASLSYDGRv 355 (370)
T KOG1007|consen 324 ETYDEHEDSVYALAWSSADPWIFASLSYDGRV 355 (370)
T ss_pred ccccccccceEEEeeccCCCeeEEEeccCceE
Confidence 36788999999999986 45566788999998
No 169
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.78 E-value=4.2e-18 Score=172.91 Aligned_cols=221 Identities=22% Similarity=0.372 Sum_probs=177.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.-+|++......++++||..+.|+|||+.. ..+.+.+.+|...|++|.++-+..|||+++..|.|.|..
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-----------kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~ 149 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRA-----------KLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHG 149 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHH-----------HHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence 344555555558999999999999999986 677788899999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecC-CCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEE-EEecCCCCeE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGH-TADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTA-VLRGHSSLVK 171 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~-~l~~h~~~V~ 171 (689)
+.++..... |... ...|.-|.|++..+ +|.+++.+|.|.+||+....+.. ..+.|..+..
T Consensus 150 ~~t~~~tt~-----------------f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~ 212 (673)
T KOG4378|consen 150 TKTKQKTTT-----------------FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCR 212 (673)
T ss_pred cccCccccc-----------------eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcC
Confidence 998743333 3222 33456889999876 67788999999999998766554 4567999999
Q ss_pred EEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 172 GVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 172 ~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
+|||+|.. .+|++.+.|..|.+||.+.......+.
T Consensus 213 gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~-------------------------------------------- 248 (673)
T KOG4378|consen 213 GICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT-------------------------------------------- 248 (673)
T ss_pred cceecCCccceEEEecccceEEEeecccccccceee--------------------------------------------
Confidence 99999965 678899999999999997533222111
Q ss_pred ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~ 330 (689)
...+...++|.++| .+|+.|...|.|..||++..+...
T Consensus 249 ---------y~~Plstvaf~~~G---------------------------------~~L~aG~s~G~~i~YD~R~~k~Pv 286 (673)
T KOG4378|consen 249 ---------YSHPLSTVAFSECG---------------------------------TYLCAGNSKGELIAYDMRSTKAPV 286 (673)
T ss_pred ---------ecCCcceeeecCCc---------------------------------eEEEeecCCceEEEEecccCCCCc
Confidence 24577888898887 799999999999999999876666
Q ss_pred EecccCCCCeEEEEEccCC
Q 040062 331 VAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg 349 (689)
.....|...|++++|-|..
T Consensus 287 ~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 287 AVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred eEeeecccceeEEEeeecc
Confidence 6666789999999998864
No 170
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.78 E-value=5.7e-18 Score=177.05 Aligned_cols=274 Identities=17% Similarity=0.274 Sum_probs=206.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg 147 (689)
.|+.++|-|||..|+.+.. ..+.+||...+ ....++++|...|.|++|+.||+.+++|+.|.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG-----------------~llqtLKgHKDtVycVAys~dGkrFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG-----------------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADK 75 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc-----------------ccccccccccceEEEEEEccCCceeccCCCce
Confidence 7999999999998888765 46899999988 68889999999999999999999999999999
Q ss_pred eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 148 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
.|.+|+..- +-+..+. |.+.|.|+.|+|-...|++++-. ..-+|.......... ..+..+.+++|..||
T Consensus 76 ~VI~W~~kl-EG~LkYS-H~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK~V~K~--------kss~R~~~CsWtnDG 144 (1081)
T KOG1538|consen 76 SVIIWTSKL-EGILKYS-HNDAIQCMSFNPITHQLASCSLS-DFGLWSPEQKSVSKH--------KSSSRIICCSWTNDG 144 (1081)
T ss_pred eEEEecccc-cceeeec-cCCeeeEeecCchHHHhhhcchh-hccccChhhhhHHhh--------hhheeEEEeeecCCC
Confidence 999998643 2223333 99999999999999999998865 577888765433221 123448899999999
Q ss_pred CeEEEecCCCCCccccceeec-CCceeeee-ecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 228 HFITTTHGFQKPRHSAPVLER-GEWAATFD-FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~-~~~~~~~~-l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
++++.+...+. +.+.+. ++....+. --|.+.+|.+++|+|... .-.
T Consensus 145 qylalG~~nGT----IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg----------------------------~G~ 192 (1081)
T KOG1538|consen 145 QYLALGMFNGT----ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG----------------------------EGR 192 (1081)
T ss_pred cEEEEeccCce----EEeecCCCCcceEEeCCCCCCCCceEEEecCCCC----------------------------CCc
Confidence 99999876443 333332 22222222 335688999999999851 012
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHH
Q 040062 306 YNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKR 385 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~ 385 (689)
...+++.....++.+|.+.. +.+..-... .-...|+.+.++|.|+..|+.|+.+.+|--+.-.++
T Consensus 193 ~di~aV~DW~qTLSFy~LsG-~~Igk~r~L-~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~GvrLG------------- 257 (1081)
T KOG1538|consen 193 NDILAVADWGQTLSFYQLSG-KQIGKDRAL-NFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVRLG------------- 257 (1081)
T ss_pred cceEEEEeccceeEEEEecc-eeecccccC-CCCchhheeccCCcEEEEccCCCceEEEeecCeEEe-------------
Confidence 37899999999999998754 333221111 223568999999999999999999999976543332
Q ss_pred hccCCccCceeeeecCchhhhhHhhccccceee
Q 040062 386 SRYGDVRGRLANLAETPAQLLLEAASAKETTTK 418 (689)
Q Consensus 386 ~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~ 418 (689)
..|.....|+.++..|++++++.|..||++-+
T Consensus 258 -Tvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 258 -TVGEQDSWIWTVQAKPNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred -eccccceeEEEEEEccCCceEEEEEccCeeeh
Confidence 22334558999999999999999999999943
No 171
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.77 E-value=1.1e-17 Score=168.57 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=191.2
Q ss_pred cCceeeecCc----eEEEEEEcCC-------CCEEEEEeCCCeEEEEeCCcCCCCCCC----------Ccccceeeeeec
Q 040062 5 KPSWVRHEGM----QIFSIDVQPG-------ALRFATGGGDHKVRIWNMKSVGKNFEN----------DESTQRLLATLR 63 (689)
Q Consensus 5 k~~~~~H~g~----~I~si~~spd-------g~~Latgs~Dg~V~IWd~~~~~~~~~~----------~~~~~~~~~~l~ 63 (689)
-+.|+-|+.. .-.|+.|... |+++|.|+.|..|.|||+.-....+.. ....++.-....
T Consensus 161 e~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~ 240 (463)
T KOG0270|consen 161 EENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSAS 240 (463)
T ss_pred CcceeEecceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccc
Confidence 3567777742 2256666543 589999999999999998753322110 001122222345
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEE
Q 040062 64 DHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILA 141 (689)
Q Consensus 64 ~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~La 141 (689)
+|...|.++.|+.+ ...||||+.|.+|++||+.++ ++...+..|...|.++.|+|. ..+|+
T Consensus 241 gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g-----------------~p~~s~~~~~k~Vq~l~wh~~~p~~LL 303 (463)
T KOG0270|consen 241 GHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTG-----------------KPKSSITHHGKKVQTLEWHPYEPSVLL 303 (463)
T ss_pred cchHHHHHHHhccccceeEEecCCCceEEEEEcCCC-----------------CcceehhhcCCceeEEEecCCCceEEE
Confidence 79999999999974 458999999999999999999 677778889999999999987 45999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC-cceeeccCcccccCCcccEE
Q 040062 142 SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDW-SLAHRTDGHWAKSLGSTFFR 219 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~ 219 (689)
+|+.|++|.+.|.+........-...+.|-.++|+|.. ..++++..||+|+-+|+|+. +++.++..|... |.
T Consensus 304 sGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~------IS 377 (463)
T KOG0270|consen 304 SGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDE------IS 377 (463)
T ss_pred eccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCC------cc
Confidence 99999999999999643333322356789999999966 56777889999999999976 788888877665 88
Q ss_pred EEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCC---CCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 220 RLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGH---NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h---~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
+++++..-..+++..+ ....+.+|+...-..... ..| -+...|.++.|+-
T Consensus 378 gl~~n~~~p~~l~t~s---~d~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~----------------------- 430 (463)
T KOG0270|consen 378 GLSVNIQTPGLLSTAS---TDKVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDV----------------------- 430 (463)
T ss_pred eEEecCCCCcceeecc---ccceEEEEeecCCCCccc-ccccccccceeecccCCCc-----------------------
Confidence 9999988766555533 244556665432222111 011 1234555555552
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~ 330 (689)
..+++.|+..+.++|||+.+..++.
T Consensus 431 ---------a~~la~GG~k~~~~vwd~~~~~~V~ 455 (463)
T KOG0270|consen 431 ---------AFTLAFGGEKAVLRVWDIFTNSPVR 455 (463)
T ss_pred ---------ceEEEecCccceEEEeecccChhHH
Confidence 2578899999999999998877654
No 172
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.77 E-value=1.4e-15 Score=163.67 Aligned_cols=315 Identities=29% Similarity=0.468 Sum_probs=238.4
Q ss_pred eEEEEEE-cCCCC-EEEEEeC-CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-CCeE
Q 040062 15 QIFSIDV-QPGAL-RFATGGG-DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-DQVI 90 (689)
Q Consensus 15 ~I~si~~-spdg~-~Latgs~-Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-Dg~I 90 (689)
.+..+.+ ++++. +++..+. |+.+++|+... .......+..|...|.++.|+|++.++++++. |+.+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 180 (466)
T COG2319 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLST----------PGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTI 180 (466)
T ss_pred ceeeEEEECCCcceEEeccCCCCccEEEEEecC----------CCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCce
Confidence 5777777 88887 5555455 89999999873 24677788899999999999999999999986 9999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEE-EEecCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTA-VLRGHSS 168 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~-~l~~h~~ 168 (689)
++|++... .....+.+|...|.+++|+|++. ++++++.|+.|++||...+..+. .+..|..
T Consensus 181 ~~~~~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 243 (466)
T COG2319 181 KLWDLRTG-----------------KPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSD 243 (466)
T ss_pred EEEEcCCC-----------------ceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCc
Confidence 99999874 57777778999999999999998 56666999999999998888888 6888888
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-eeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
.+ ...|++++.++++++.|+.+++|+++.... ...+..+ ...+..+.|.|++..+++...+ .. +.+|+
T Consensus 244 ~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~d-~~---~~~~~ 312 (466)
T COG2319 244 SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH------SSSVLSVAFSPDGKLLASGSSD-GT---VRLWD 312 (466)
T ss_pred ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC------CccEEEEEECCCCCEEEEeeCC-Cc---EEEEE
Confidence 75 448999999999999999999999987665 3333222 3348888999988888884443 22 56666
Q ss_pred cCCceeeeeec--CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE-eCCCcEEEEeCC
Q 040062 248 RGEWAATFDFL--GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG-SQDRTITVWTTA 324 (689)
Q Consensus 248 ~~~~~~~~~l~--~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg-s~Dg~I~iwd~~ 324 (689)
........... .|...+..+.| ... +..++.+ ..|+.+.+|++.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------------------------------~~~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 313 LETGKLLSSLTLKGHEGPVSSLSF-SPD--------------------------------GSLLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred cCCCceEEEeeecccCCceEEEEE-CCC--------------------------------CCEEEEeecCCCcEEeeecC
Confidence 55554444443 77777888888 421 1244444 688999999998
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEE-EeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFA-CSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~s-gs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
.......... ...+..+.+++ ...++. +..++.+.+|+............ +...+..+.++++
T Consensus 360 ~~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~ 423 (466)
T COG2319 360 TGKPLKTLEG--HSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG-------------HTSRVTSLDFSPD 423 (466)
T ss_pred CCceeEEecC--CceEEEEEECC-CCCEEEEecCCCceEEEecccCeeeeeccC-------------CCCcEEEEEECCC
Confidence 8872222221 22288999998 544444 68899999999988766533321 1046899999999
Q ss_pred hhhhHhhccccce
Q 040062 404 QLLLEAASAKETT 416 (689)
Q Consensus 404 g~~Las~s~DG~v 416 (689)
+..+++++.++++
T Consensus 424 ~~~~~~~~~~~~~ 436 (466)
T COG2319 424 GKSLASGSSDNTI 436 (466)
T ss_pred CcEEEEecCCCcE
Confidence 9999998888888
No 173
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=9.4e-17 Score=149.81 Aligned_cols=294 Identities=14% Similarity=0.192 Sum_probs=202.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|++-+++|.+++|++|..+|.|.++.++........ +.....+..+++|.++|+.++|. ..+|++|++ |.|+=|.
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd-G~V~gw~ 87 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD-GLVYGWE 87 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-CCCCcceeeccccCCCeeeeeee--hhheeeccC-ceEEEee
Confidence 5888899999999999999999999999875433332 22344556668999999999998 457888765 9999998
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLR---GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
....... ....+.|+...-.. ..-..|.++...|..+-++.++.|+.++.||+++|+....+++|++.|.
T Consensus 88 W~E~~es-------~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH 160 (325)
T KOG0649|consen 88 WNEEEES-------LATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH 160 (325)
T ss_pred ehhhhhh-------ccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee
Confidence 7654210 00112222221111 1224688999998877777777899999999999999999999999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc----ccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS----TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
++.--.....+++|++||++|+||+++.+.+..+.....+.... .+| .+..-+..+++++.+ ....+|.
T Consensus 161 ~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgG-----p~lslwh 233 (325)
T KOG0649|consen 161 SVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGG-----PKLSLWH 233 (325)
T ss_pred eeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCC-----CceeEEe
Confidence 99986666678999999999999999999998887654443222 223 334445667777654 4455777
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
.........+. -.+++..+.|.. +.++++++.+.+.-|.+. +.
T Consensus 234 Lrsse~t~vfp-ipa~v~~v~F~~-----------------------------------d~vl~~G~g~~v~~~~l~-Gv 276 (325)
T KOG0649|consen 234 LRSSESTCVFP-IPARVHLVDFVD-----------------------------------DCVLIGGEGNHVQSYTLN-GV 276 (325)
T ss_pred ccCCCceEEEe-cccceeEeeeec-----------------------------------ceEEEeccccceeeeeec-cE
Confidence 66555544332 245566666743 478888888999999874 33
Q ss_pred ceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEE
Q 040062 328 PLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANF 364 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vw 364 (689)
.-...... ....++..|+..- ++|-.++....+.|+
T Consensus 277 l~a~ip~~-s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 277 LQANIPVE-STACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EEEeccCC-ccceeeecccCCceEEEEecccceeeeee
Confidence 22333322 3345666665443 445556666666665
No 174
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1.1e-16 Score=160.89 Aligned_cols=202 Identities=19% Similarity=0.266 Sum_probs=158.2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 129 VDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 129 ~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
.+++|+.+|..|++++.||++|||+..+...+.....|...|.++.|+|||++|++.+.| ..+||+++++..+......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~ 226 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF 226 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence 789999999999999999999999988888888888899999999999999999999999 8999999999666655432
Q ss_pred ccccCCcccEEEEEEcCCC---CeEEEecCCCCC---ccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 209 WAKSLGSTFFRRLGWSPCG---HFITTTHGFQKP---RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg---~~l~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
. ....+..+.|+.|+ .+.+++...... ...+.+|.................|.+++.+.++
T Consensus 227 ~----k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dG--------- 293 (398)
T KOG0771|consen 227 S----KDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDG--------- 293 (398)
T ss_pred c----cchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCC---------
Confidence 1 12235667788776 444433322111 1112233332222222233334577788887776
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEE
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVA 362 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~ 362 (689)
++++.|+.||.|.|++..+.+.+...+..|...|+.+.|+||.+++++.+.|..+.
T Consensus 294 ------------------------kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~ 349 (398)
T KOG0771|consen 294 ------------------------KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAA 349 (398)
T ss_pred ------------------------cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCcee
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeec
Q 040062 363 NFHFEV 368 (689)
Q Consensus 363 vwd~~~ 368 (689)
|..+.-
T Consensus 350 v~~l~v 355 (398)
T KOG0771|consen 350 VTKLAV 355 (398)
T ss_pred EEEEee
Confidence 998875
No 175
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.76 E-value=1e-17 Score=186.39 Aligned_cols=252 Identities=19% Similarity=0.262 Sum_probs=197.6
Q ss_pred ceEEEEEEcCCCCE----EEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC-CEEEEEeCCC
Q 040062 14 MQIFSIDVQPGALR----FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG-RYIASGSDDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~----Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~Dg 88 (689)
..-+.++|.+.|.. ||.|..||.|.+||.... ........+.++..|.+.|..+.|++.. ++||+|+.||
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~-----~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI-----IANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhh-----ccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 46789999998876 888899999999998863 1222357788899999999999999955 5999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.|.|||+........++ -......|.+|+|+.. .++|++++.+|.+.|||++..+.+..+..|.
T Consensus 140 eI~iWDlnn~~tP~~~~---------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPG---------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred cEEEeccCCcCCCCCCC---------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCC
Confidence 99999998753222221 1124567999999875 4588999999999999999998888877665
Q ss_pred C--CeEEEEEccCC-CEEEEEeCCC---eEEEEECCCC-cceeeccCcccccCCcccEEEEEEcCCC-CeEEEecCCCCC
Q 040062 168 S--LVKGVAWDPIG-SFIASQSDDK---TVIIWRTSDW-SLAHRTDGHWAKSLGSTFFRRLGWSPCG-HFITTTHGFQKP 239 (689)
Q Consensus 168 ~--~V~~l~~spdg-~~las~s~Dg---~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~~~~~ 239 (689)
. .+..+.|+|+. ..|+++++|. .|.+||+|.- ...++++.|... +.++.|++.+ +++++++.
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~G------ilslsWc~~D~~lllSsgk---- 274 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRG------ILSLSWCPQDPRLLLSSGK---- 274 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccc------eeeeccCCCCchhhhcccC----
Confidence 4 57789999986 4566666553 6999999864 345555566554 8999999988 55666544
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
+..+..|+..+.+....+......+..+.|+|.. -.++++++.||.|.
T Consensus 275 D~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~--------------------------------P~~~A~asfdgkI~ 322 (1049)
T KOG0307|consen 275 DNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRN--------------------------------PSVMAAASFDGKIS 322 (1049)
T ss_pred CCCeeEecCCCceEeeecCCCCcceeeeeecCCC--------------------------------cchhhhheecccee
Confidence 4556689998888888888888899999999984 36899999999999
Q ss_pred EEeCCCCC
Q 040062 320 VWTTASPR 327 (689)
Q Consensus 320 iwd~~~~~ 327 (689)
||.+....
T Consensus 323 I~sl~~~~ 330 (1049)
T KOG0307|consen 323 IYSLQGTD 330 (1049)
T ss_pred eeeeecCC
Confidence 99987654
No 176
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=1.3e-16 Score=154.59 Aligned_cols=200 Identities=19% Similarity=0.267 Sum_probs=159.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.+|+|.+|++|+..+|++..+..|.||..... ...+..++++.|...|++|.|+|..+.|++|+.|..-++|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~~~--------~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw 82 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVW 82 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEecCC--------CCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccc
Confidence 58999999999999999999999999998751 1267889999999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE----EEEecCCCC
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT----AVLRGHSSL 169 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~----~~l~~h~~~ 169 (689)
....+ ..|+....+..+...++++.|+|.++.||+|+....|.||-.+...-- ..-+.+.+.
T Consensus 83 ~~~~~--------------~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirSt 148 (361)
T KOG1523|consen 83 TQPSG--------------GTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRST 148 (361)
T ss_pred ccCCC--------------CeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccc
Confidence 88544 467888888889999999999999999999999999999987543321 122346788
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec-------cCcc-----cccCCcccEEEEEEcCCCCeEEEecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT-------DGHW-----AKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~-------~~~~-----~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
|.++.|+|++-+|+.|+.|+..++|..--.....+- ..++ .......++..+.|+|+|..|+-...
T Consensus 149 v~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H 226 (361)
T KOG1523|consen 149 VTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH 226 (361)
T ss_pred eeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC
Confidence 999999999999999999999999974210000000 0000 00133456899999999999987654
No 177
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.75 E-value=6.8e-17 Score=163.23 Aligned_cols=294 Identities=15% Similarity=0.162 Sum_probs=214.9
Q ss_pred ceeeeeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHG--RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg--~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
.........|.+.|++++|+|.. +++|+|+.-|.|-+||+.+.. .....+..+..|..+|.+|.|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~-------------~d~d~v~~f~~hs~~Vs~l~F 242 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQE-------------KDKDGVYLFTPHSGPVSGLKF 242 (498)
T ss_pred ceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCC-------------CccCceEEeccCCccccceEe
Confidence 44555667789999999999943 688999999999999996331 112456778889999999999
Q ss_pred cCCC-CEEEEEeCCCeEEEEEcCCCeE--EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-eeeccCcc
Q 040062 134 SPDD-SILASGSLDNTIHIWNMSTGIC--TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-AHRTDGHW 209 (689)
Q Consensus 134 spdg-~~Lasgs~Dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-~~~~~~~~ 209 (689)
+|.+ ..+++.+.||+|++-|++.... +..+......+..+.|+.+...++.+..=|.+.+||+++... ...+..+.
T Consensus 243 ~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 243 SPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred cCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 9965 4899999999999999987543 333333455677888888888888888777999999998665 33334443
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee----eeeecCCCCCEEEEEEcCCccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA----TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~ 285 (689)
.+ |.++++.|...+++++++ .+....+|+.+.... .+....|...|.+..|+|.+
T Consensus 323 kK------I~sv~~NP~~p~~laT~s---~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~------------ 381 (498)
T KOG4328|consen 323 KK------ITSVALNPVCPWFLATAS---LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSG------------ 381 (498)
T ss_pred cc------cceeecCCCCchheeecc---cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCC------------
Confidence 33 899999998766555443 245666888765433 34566899999999999996
Q ss_pred cccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC----CCCCceEEecccCC--C--CeEEEEEccCCCeEEEEeC
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT----ASPRPLFVAKHFFT--Q--SVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~----~~~~~~~~~~~~h~--~--~V~~l~~spdg~~L~sgs~ 357 (689)
+. |++.+.|..|+|||. ..-.++..+.+.+. . ......|.||..++++|-.
T Consensus 382 --------------------gt-l~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~ 440 (498)
T KOG4328|consen 382 --------------------GT-LLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRY 440 (498)
T ss_pred --------------------Cc-eEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEecc
Confidence 34 999999999999998 34455555554332 2 3456789999999999999
Q ss_pred CCcEEEEEeeccccccccChHHHHHHHHhccCCccCcee-eeecCchhhhhHhh-ccccce
Q 040062 358 DGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLA-NLAETPAQLLLEAA-SAKETT 416 (689)
Q Consensus 358 DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~-~l~~Spdg~~Las~-s~DG~v 416 (689)
-..|-|||-+.+++...+...+ ...|. -..|+|-+..+++| +.-|.|
T Consensus 441 ~r~IDv~~~~~~q~v~el~~P~------------~~tI~~vn~~HP~~~~~~aG~~s~Gki 489 (498)
T KOG4328|consen 441 PRPIDVFDGNGGQMVCELHDPE------------SSTIPSVNEFHPMRDTLAAGGNSSGKI 489 (498)
T ss_pred CcceeEEcCCCCEEeeeccCcc------------ccccccceeecccccceeccCCccceE
Confidence 9999999998888665443221 11233 35689988745554 455555
No 178
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=2e-18 Score=184.81 Aligned_cols=282 Identities=21% Similarity=0.300 Sum_probs=205.9
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+.++.+.+|...|+|+.|...|.++++|++|..++||..++. .+...++||.+.|++++.+.
T Consensus 180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~-----------------~~lAs~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA-----------------RCLASCRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccch-----------------hhhccCCCCccccchhccch
Confidence 4556677899999999999999999999999999999998887 68888999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
++.++++++.|..|++|-+.++..+..+.+|++.|++|+|+|-. +.+.||++++||.+ +..+.....+.. ....
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~-~~~~ 316 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLK-FTEK 316 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCC-cccc
Confidence 99999999999999999999999999999999999999999954 77889999999997 222222211111 1122
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
..+..+.|...+..++++..++... .|+.. .+..+...+..+.++.+
T Consensus 317 ~~~~s~~~~~~~~~f~Tgs~d~ea~----n~e~~------~l~~~~~~lif~t~ssd----------------------- 363 (1113)
T KOG0644|consen 317 DLVDSILFENNGDRFLTGSRDGEAR----NHEFE------QLAWRSNLLIFVTRSSD----------------------- 363 (1113)
T ss_pred cceeeeeccccccccccccCCcccc----cchhh------HhhhhccceEEEecccc-----------------------
Confidence 3355556666666555554422211 11100 01112222222222221
Q ss_pred ccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccccc
Q 040062 296 SKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
...+.+++-.+-.+.+|++.++..+... ..|...+..|.++|-. +...+++.||++.|||+-.+.....
T Consensus 364 ---------~~~~~~~ar~~~~~~vwnl~~g~l~H~l-~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~ 433 (1113)
T KOG0644|consen 364 ---------LSSIVVTARNDHRLCVWNLYTGQLLHNL-MGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKH 433 (1113)
T ss_pred ---------ccccceeeeeeeEeeeeecccchhhhhh-cccccceeeeeecCCCcHhhhhccCCCceEeeecccCCccee
Confidence 1146667777888999999999877765 4688899999999954 4556799999999999877654432
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.+-+ .+.+....||+||..++....-|.+
T Consensus 434 ------------y~~g-h~kl~d~kFSqdgts~~lsd~hgql 462 (1113)
T KOG0644|consen 434 ------------YFIG-HGKLVDGKFSQDGTSIALSDDHGQL 462 (1113)
T ss_pred ------------eecc-cceeeccccCCCCceEecCCCCCce
Confidence 2222 3457888999998888777666666
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.75 E-value=4.9e-15 Score=156.66 Aligned_cols=278 Identities=10% Similarity=0.100 Sum_probs=173.3
Q ss_pred EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCCccccCCC
Q 040062 29 ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS-DDQVILIHEKKPGSGTTEFGSG 107 (689)
Q Consensus 29 atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~Dg~I~iwdl~~~~~~~~~~~~ 107 (689)
++...++.|++|++.+. ...+.+..+. +.+....++++|++++|++++ .++.|.+|+++....
T Consensus 6 ~~~~~~~~I~~~~~~~~--------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~------- 69 (330)
T PRK11028 6 IASPESQQIHVWNLNHE--------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGA------- 69 (330)
T ss_pred EEcCCCCCEEEEEECCC--------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCc-------
Confidence 34467899999999631 1134555554 346678899999999987664 478899999973211
Q ss_pred CCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-C---eEEEEEecCCCCeEEEEEccCCCEE
Q 040062 108 EPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMST-G---ICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 108 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~-~---~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
+....... .......++|+|++++|++++ .++.|.+|++.+ + +.+..+. +.....+++|+|+++++
T Consensus 70 -------l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l 140 (330)
T PRK11028 70 -------LTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTL 140 (330)
T ss_pred -------eEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEE
Confidence 12222222 233567899999999888776 488999999964 2 2233333 33456778999999988
Q ss_pred EEEe-CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC----Cceeeeee
Q 040062 183 ASQS-DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG----EWAATFDF 257 (689)
Q Consensus 183 as~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~l 257 (689)
++++ .++.|.+||+++...+................+.+.|+|+|+++++++... ..+.+|+.. .......+
T Consensus 141 ~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~---~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 141 WVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELN---SSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCC---CEEEEEEEeCCCCCEEEEEEE
Confidence 6555 568999999976432221100000000112357899999999999886533 344444432 22222111
Q ss_pred cCC------CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-CCcEEEEeCCCCCceE
Q 040062 258 LGH------NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTASPRPLF 330 (689)
Q Consensus 258 ~~h------~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~~~~~~ 330 (689)
..+ ......+.|+|+ +++++++.. ++.|.+|++.......
T Consensus 218 ~~~p~~~~~~~~~~~i~~~pd---------------------------------g~~lyv~~~~~~~I~v~~i~~~~~~~ 264 (330)
T PRK11028 218 DMMPADFSDTRWAADIHITPD---------------------------------GRHLYACDRTASLISVFSVSEDGSVL 264 (330)
T ss_pred ecCCCcCCCCccceeEEECCC---------------------------------CCEEEEecCCCCeEEEEEEeCCCCeE
Confidence 111 011123445554 477777754 7899999996543221
Q ss_pred Eeccc--CCCCeEEEEEccCCCeEEEEeC-CCcEEEEEee
Q 040062 331 VAKHF--FTQSVVDLSWSPDGYSLFACSL-DGTVANFHFE 367 (689)
Q Consensus 331 ~~~~~--h~~~V~~l~~spdg~~L~sgs~-DG~I~vwd~~ 367 (689)
.+... -......+.|+|||++|+++.. +++|.+|+++
T Consensus 265 ~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 265 SFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred EEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 11110 1234568999999999998775 8999999985
No 180
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.73 E-value=5.7e-16 Score=148.16 Aligned_cols=291 Identities=17% Similarity=0.245 Sum_probs=201.1
Q ss_pred ceEEEEEEcC---CCCEEEEEeC----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC-----CEE
Q 040062 14 MQIFSIDVQP---GALRFATGGG----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG-----RYI 81 (689)
Q Consensus 14 ~~I~si~~sp---dg~~Latgs~----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg-----~~L 81 (689)
-+++++.|+- ...+||.|+. .++|.|-.+..... ......+ ..|.-+++.+.|.|+. ++|
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~-------e~~~~a~-fd~~YP~tK~~wiPd~~g~~pdlL 116 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSG-------ELVEDAN-FDHPYPVTKLMWIPDSKGVYPDLL 116 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCC-------ceeccCC-CCCCCCccceEecCCccccCcchh
Confidence 3799999994 3458898874 57888877764211 1111222 3699999999999976 367
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCe--
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGI-- 158 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~-- 158 (689)
|+++ ..+++|.+............ -....-..+..++++..|+. |-+++.+.+-|-+..|||++++.
T Consensus 117 ATs~--D~LRlWri~~ee~~~~~~~~--------L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~ 186 (364)
T KOG0290|consen 117 ATSS--DFLRLWRIGDEESRVELQSV--------LNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSG 186 (364)
T ss_pred hccc--CeEEEEeccCcCCceehhhh--------hccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecccc
Confidence 7664 47999999754211111000 00011223567899999986 45699999999999999999863
Q ss_pred -EEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC-CeEEEecC
Q 040062 159 -CTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG-HFITTTHG 235 (689)
Q Consensus 159 -~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~ 235 (689)
....+-.|...|..|+|...+ ..|++.+.||.+|+||++..+....+..... ......+++|++.. +++++...
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~---~~~pLlRLswnkqDpnymATf~~ 263 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPS---PSTPLLRLSWNKQDPNYMATFAM 263 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCC---CCCcceeeccCcCCchHHhhhhc
Confidence 355677899999999999865 5899999999999999998765554433222 14457899999865 55555443
Q ss_pred CCCCccccceeecC-CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC
Q 040062 236 FQKPRHSAPVLERG-EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ 314 (689)
Q Consensus 236 ~~~~~~~~~i~~~~-~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~ 314 (689)
+.. .+.+++.+ .......+.+|.+.|..++|.|.. ...|++++.
T Consensus 264 dS~---~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS--------------------------------~~hictaGD 308 (364)
T KOG0290|consen 264 DSN---KVVILDIRVPCTPVARLRNHQASVNGIAWAPHS--------------------------------SSHICTAGD 308 (364)
T ss_pred CCc---eEEEEEecCCCcceehhhcCcccccceEecCCC--------------------------------CceeeecCC
Confidence 322 23344433 234556788999999999999984 478999999
Q ss_pred CCcEEEEeCCCCC------ceEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEE
Q 040062 315 DRTITVWTTASPR------PLFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVAN 363 (689)
Q Consensus 315 Dg~I~iwd~~~~~------~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~v 363 (689)
|..+.|||+...- ++..+. ..+.|+.+.|++ .+.+++.+. +.++.+
T Consensus 309 D~qaliWDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~-~kklei 361 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF-GKKLEI 361 (364)
T ss_pred cceEEEEecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe-cCeeeE
Confidence 9999999997532 233333 256799999996 456777766 444444
No 181
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.73 E-value=1.4e-16 Score=154.83 Aligned_cols=249 Identities=18% Similarity=0.336 Sum_probs=184.3
Q ss_pred ecCceEEEEEEcCCC----CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEEEEEe
Q 040062 11 HEGMQIFSIDVQPGA----LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYIASGS 85 (689)
Q Consensus 11 H~g~~I~si~~spdg----~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs 85 (689)
|. +.-+.++|+-|- .+||.||.-|.|+|.|+.. .+....+.+|.+.|+.+.|.|+ .++|++++
T Consensus 88 ~~-Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~-----------~~~~~~~~ghG~sINeik~~p~~~qlvls~S 155 (385)
T KOG1034|consen 88 HD-ESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVS-----------GQCSKNYRGHGGSINEIKFHPDRPQLVLSAS 155 (385)
T ss_pred CC-cceEEEEEEecCCCCCeeEEeecceeEEEEEecch-----------hhhccceeccCccchhhhcCCCCCcEEEEec
Confidence 44 577888887643 5789999999999999987 8888999999999999999995 57999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE------
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC------ 159 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~------ 159 (689)
.|..|++|++++......| .-+.+|...|.++.|+.++.+|++++.|.+|.+|++...+.
T Consensus 156 kD~svRlwnI~~~~Cv~Vf--------------GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~ 221 (385)
T KOG1034|consen 156 KDHSVRLWNIQTDVCVAVF--------------GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLEL 221 (385)
T ss_pred CCceEEEEeccCCeEEEEe--------------cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhh
Confidence 9999999999998433222 22457999999999999999999999999999999973211
Q ss_pred E-------------------E---EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-Ccc---------eeeccC
Q 040062 160 T-------------------A---VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSL---------AHRTDG 207 (689)
Q Consensus 160 ~-------------------~---~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~---------~~~~~~ 207 (689)
. . +-.-|...|.|+.|- |+++++-+-++.|..|.... .+. ..++-.
T Consensus 222 s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~ 299 (385)
T KOG1034|consen 222 SITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILG 299 (385)
T ss_pred hcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeee
Confidence 0 0 123477788888887 68999988899999998721 111 111222
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee----eeecCCCCCEEEEEEcCCccccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT----FDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.+.-.....++...+|.+.++.|+.++. ...+.+|+....... +.-......|...+|+.++
T Consensus 300 ~~~~~~c~iWfirf~~d~~~~~la~gnq----~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg---------- 365 (385)
T KOG1034|consen 300 EFDYPMCDIWFIRFAFDPWQKMLALGNQ----SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG---------- 365 (385)
T ss_pred EeccCccceEEEEEeecHHHHHHhhccC----CCcEEEEECCCCCCccCceEEeccccceeeeeeecccC----------
Confidence 2233344556677888888999998765 455667776554431 1111223456666776665
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.+|+..+.|++|.-||..
T Consensus 366 -----------------------s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 366 -----------------------SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -----------------------cEEEEEeCCCcEEEEEee
Confidence 899999999999999853
No 182
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.72 E-value=2.9e-16 Score=155.88 Aligned_cols=205 Identities=17% Similarity=0.259 Sum_probs=160.8
Q ss_pred ecCceeeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYI 81 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~L 81 (689)
..|.+-+|.+ +|..++|+| +...||+|+.|.+|.||.+........ ..+.+..|.+|...|.-|+|+|. .+.|
T Consensus 73 ~~P~v~GHt~-~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~----ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 73 SYPLVCGHTA-PVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD----LTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CCCCccCccc-cccccccCccCCceeecCCCCceEEEEECCCcccccC----cccceEEEeecceeEEEEeecccchhhH
Confidence 4677889995 999999999 457899999999999999875322111 13667889999999999999994 5689
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
++++.|.+|.||++.++ ..+.++. |...|+++.|+.||++|++.+.|..|+|||.++++.+.
T Consensus 148 lsag~Dn~v~iWnv~tg-----------------eali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~ 209 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTG-----------------EALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVS 209 (472)
T ss_pred hhccCCceEEEEeccCC-----------------ceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEee
Confidence 99999999999999998 4555555 99999999999999999999999999999999999999
Q ss_pred EEecCCCC-eEEEEEccCCCEEEEEe---CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 162 VLRGHSSL-VKGVAWDPIGSFIASQS---DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 162 ~l~~h~~~-V~~l~~spdg~~las~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.-.+|.+. -..+-|-.++.++-||- .++.+-+||-.+.+....+.. ...+..+.--.|.+|.+.++.++.
T Consensus 210 e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~e----lDtSnGvl~PFyD~dt~ivYl~GK 283 (472)
T KOG0303|consen 210 EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQE----LDTSNGVLLPFYDPDTSIVYLCGK 283 (472)
T ss_pred ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEE----eccCCceEEeeecCCCCEEEEEec
Confidence 98888753 34456788888555443 477899999876543322111 112333666678899998888764
No 183
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=151.17 Aligned_cols=295 Identities=16% Similarity=0.147 Sum_probs=178.9
Q ss_pred ecCcee--eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCE
Q 040062 4 EKPSWV--RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRY 80 (689)
Q Consensus 4 ~k~~~~--~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~ 80 (689)
..|.|+ .|. ..|+|+.|..+++ |.+|..-|.|++|++.+ .+.+..++ .|...|+.+.--|+ ..
T Consensus 4 PdP~fvLRp~~-~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt-----------~r~~~~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 4 PDPFFVLRPHS-SSVTSVLFQANER-LMSGLSVGIVKMWVLQT-----------ERDLPLIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred CCCeeEecccc-chheehhhccchh-hhcccccceEEEEEeec-----------CccchhhhhhccceeeceeecCC-cc
Confidence 344443 477 5999999998875 88899999999999997 56666676 57788999998887 56
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-----CC----CEEEEEeCCC-eEE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-----DD----SILASGSLDN-TIH 150 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-----dg----~~Lasgs~Dg-~I~ 150 (689)
|.+-+.|+.+.+|++..... ..-|.-.+..+-|.+ .+ ..++.-+... .++
T Consensus 70 l~tqgRd~~L~lw~ia~s~~--------------------i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h 129 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAF--------------------ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETH 129 (323)
T ss_pred hhhcCCCceEEEEEccCcce--------------------EEEeeeeccccccccceeccCCCcchhheecCCcccchhh
Confidence 88889999999999976421 111223333333332 11 1122211111 133
Q ss_pred EEEcCCCeEEEEEe----cCCCCeEEEEEccC-CC--EEEEEeCCCeEEEEECCCCcceeeccCccccc----CCcccEE
Q 040062 151 IWNMSTGICTAVLR----GHSSLVKGVAWDPI-GS--FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS----LGSTFFR 219 (689)
Q Consensus 151 vwd~~~~~~~~~l~----~h~~~V~~l~~spd-g~--~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~i~ 219 (689)
+-|......+.... +..+.+.|..|..+ +. +|+.|.++|.+.+||+.++..+..+...+... .....+.
T Consensus 130 ~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvl 209 (323)
T KOG0322|consen 130 KQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVL 209 (323)
T ss_pred hhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcce
Confidence 33333322222221 23466777665443 33 56678899999999999874444333221110 1122255
Q ss_pred EEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccccc
Q 040062 220 RLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
++.|.+.-..=+.++........-.-++.+.........-.+-.+..+..-|
T Consensus 210 sldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp---------------------------- 261 (323)
T KOG0322|consen 210 SLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP---------------------------- 261 (323)
T ss_pred eeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc----------------------------
Confidence 5655533222122111111110000111111111111111122333334433
Q ss_pred CccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 300 GKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 300 ~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
|++++|+++.|++|+||..++.+++.++. .|...|++++|+||...+++++.|+.|.+|++
T Consensus 262 -----D~KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 262 -----DGKILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----CCcEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 55999999999999999999999999876 58899999999999999999999999999986
No 184
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.72 E-value=1.1e-15 Score=168.00 Aligned_cols=299 Identities=18% Similarity=0.208 Sum_probs=205.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC---CcEEEEEEcC--CCCEEEEEeCCCe
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF---GSVNCVRWAK--HGRYIASGSDDQV 89 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~v~fsp--dg~~Lasgs~Dg~ 89 (689)
+-..+.|+|-...++++...-.|+|||.+. .+.+..|..+. ..|+.+.+-. |..+|++|+.||.
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~-----------~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGv 1134 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEK-----------GRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGV 1134 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEeccc-----------CceeccccCCCCCCCccceeeeecccchhheeeeccCce
Confidence 356788999999999998778999999987 66666665443 4688888875 5568999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-CC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG-HS 167 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-h~ 167 (689)
|+||+--.... ..+.-+..|..+..... ..+.=.-+.|.....+|++++.-..|+|||.....++..+.. .+
T Consensus 1135 IRIwk~y~~~~------~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~ 1208 (1387)
T KOG1517|consen 1135 IRIWKDYADKW------KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS 1208 (1387)
T ss_pred EEEeccccccc------CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC
Confidence 99997543210 00111112222211111 111114457877777788877788999999998887777653 34
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 168 SLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 168 ~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
..|+++.-+- .|+.|+.|..||.|++||.+.......+
T Consensus 1209 t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v----------------------------------------- 1247 (1387)
T KOG1517|consen 1209 TLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLV----------------------------------------- 1247 (1387)
T ss_pred ccceeecccccCCceEEEeecCCceEEeecccCCccccc-----------------------------------------
Confidence 5667665443 4699999999999999998753221000
Q ss_pred ecCCceeeeeecCCCCC--EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 247 ERGEWAATFDFLGHNAP--IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~--v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.....|... |..+.+.+.|+ ..|++|+.||.|++||++
T Consensus 1248 --------~~~R~h~~~~~Iv~~slq~~G~--------------------------------~elvSgs~~G~I~~~DlR 1287 (1387)
T KOG1517|consen 1248 --------CVYREHNDVEPIVHLSLQRQGL--------------------------------GELVSGSQDGDIQLLDLR 1287 (1387)
T ss_pred --------eeecccCCcccceeEEeecCCC--------------------------------cceeeeccCCeEEEEecc
Confidence 012335544 88888887762 369999999999999999
Q ss_pred CCCceEEe-cccC---CCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeec
Q 040062 325 SPRPLFVA-KHFF---TQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAE 400 (689)
Q Consensus 325 ~~~~~~~~-~~~h---~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~ 400 (689)
.......+ ...| ++..++|..+++...+|+|+. +.|+||++...++...... . ...+...+.+.+++|
T Consensus 1288 ~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n---~----~F~~q~~gs~scL~F 1359 (1387)
T KOG1517|consen 1288 MSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYN---P----GFMGQRIGSVSCLAF 1359 (1387)
T ss_pred cCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccC---c----ccccCcCCCcceeee
Confidence 84211111 1111 235999999999999999998 9999999986555432211 1 222334457899999
Q ss_pred CchhhhhHhhccccceeee
Q 040062 401 TPAQLLLEAASAKETTTKK 419 (689)
Q Consensus 401 Spdg~~Las~s~DG~v~~~ 419 (689)
+|-..+||+|+.|.+|+.+
T Consensus 1360 HP~~~llAaG~~Ds~V~iY 1378 (1387)
T KOG1517|consen 1360 HPHRLLLAAGSADSTVSIY 1378 (1387)
T ss_pred cchhHhhhhccCCceEEEe
Confidence 9999999999999999544
No 185
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.72 E-value=1.1e-16 Score=164.18 Aligned_cols=267 Identities=16% Similarity=0.256 Sum_probs=188.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc--CCCCEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PDDSILA 141 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pdg~~La 141 (689)
.|...|.|+.|+.+...+.+++++..+.-|++...+.... .....+......+....-- .....|+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~------------~~p~df~pt~~h~~~rs~~~g~~~d~~~ 79 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA------------KLPDDFVPTDMHLGGRSSGGGKGSDTLL 79 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhh------------hCCcccCCccccccccccCCCCCcceEE
Confidence 4667788999998887777776666666666655421100 0000000000000000000 1234788
Q ss_pred EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 142 SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
.++.||.+.+.+- .++....+..|.+.+.+-.|+|||.-|+++++||.|++|.- ++.+..++... ...++++
T Consensus 80 i~s~DGkf~il~k-~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~------~~~v~c~ 151 (737)
T KOG1524|consen 80 ICSNDGRFVILNK-SARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR-SGMLRSTVVQN------EESIRCA 151 (737)
T ss_pred EEcCCceEEEecc-cchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec-cchHHHHHhhc------CceeEEE
Confidence 8899999999984 67777788899999999999999999999999999999985 44444444332 2339999
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
+|.|+++.++.+.+. .+.+-........+....|++-|.++.|++..
T Consensus 152 ~W~p~S~~vl~c~g~-----h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s---------------------------- 198 (737)
T KOG1524|consen 152 RWAPNSNSIVFCQGG-----HISIKPLAANSKIIRWRAHDGLVLSLSWSTQS---------------------------- 198 (737)
T ss_pred EECCCCCceEEecCC-----eEEEeecccccceeEEeccCcEEEEeecCccc----------------------------
Confidence 999999888887653 33344444555667788999999999999886
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
+++++|++|-..+|||. .|+.++.-. .|..+|++++|.|| ..++.+|.+ +.+ ++.
T Consensus 199 -----~lI~sgGED~kfKvWD~-~G~~Lf~S~-~~ey~ITSva~npd-~~~~v~S~n-t~R---~~~------------- 253 (737)
T KOG1524|consen 199 -----NIIASGGEDFRFKIWDA-QGANLFTSA-AEEYAITSVAFNPE-KDYLLWSYN-TAR---FSS------------- 253 (737)
T ss_pred -----cceeecCCceeEEeecc-cCcccccCC-hhccceeeeeeccc-cceeeeeee-eee---ecC-------------
Confidence 89999999999999996 456665543 57889999999999 555555532 333 211
Q ss_pred HHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
. ..+.|..++||+||..++.|...|.+
T Consensus 254 ----p----~~GSifnlsWS~DGTQ~a~gt~~G~v 280 (737)
T KOG1524|consen 254 ----P----RVGSIFNLSWSADGTQATCGTSTGQL 280 (737)
T ss_pred ----C----CccceEEEEEcCCCceeeccccCceE
Confidence 1 23479999999999999999999988
No 186
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=3.6e-15 Score=162.31 Aligned_cols=337 Identities=15% Similarity=0.147 Sum_probs=220.7
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
.+|.+++.|.+.+..-. ..+.+|+...... .......-..|.-.++|+++||+++++|++..||.|.+|.--
T Consensus 164 ~~I~~~~~ge~~~i~~~-~~~~~~~v~~~~~-------~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~ 235 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGIVHM-CKIHIYFVPKHTK-------HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDF 235 (792)
T ss_pred ccEEEcCCceEEEEEEe-eeEEEEEecccce-------eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecc
Confidence 57778888877666544 5789998875110 001111112466679999999999999999999999999643
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEc
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD 176 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~s 176 (689)
.... .-.....+.-|...|.+++|++||.+|++|+..+.+.+|.+.+++ ...+..-.+.|..+.++
T Consensus 236 ~~~~-------------~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS 301 (792)
T KOG1963|consen 236 GSSD-------------DSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVS 301 (792)
T ss_pred cccc-------------ccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEc
Confidence 3100 003456677899999999999999999999999999999999988 45555578999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc-----cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 177 PIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK-----SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 177 pdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
||+.+.+....|..|.+....+......+.+.... .......+.++++|.-+.++... ..+.+.+++.-+-
T Consensus 302 ~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~----~~g~vQ~ydl~td 377 (792)
T KOG1963|consen 302 PDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG----HPGHVQFYDLYTD 377 (792)
T ss_pred CCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC----CCceEEEEecccc
Confidence 99999999999999999998877766666554332 12345567788888544444432 2344445544332
Q ss_pred eeeeeec-----CCCC------CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-------
Q 040062 252 AATFDFL-----GHNA------PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS------- 313 (689)
Q Consensus 252 ~~~~~l~-----~h~~------~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs------- 313 (689)
...+.+. .+.+ .++.++++ ..+.++++.-
T Consensus 378 ~~i~~~~v~~~n~~~~~~n~~v~itav~~~---------------------------------~~gs~maT~E~~~d~~~ 424 (792)
T KOG1963|consen 378 STIYKLQVCDENYSDGDVNIQVGITAVARS---------------------------------RFGSWMATLEARIDKFN 424 (792)
T ss_pred ceeeeEEEEeecccCCcceeEEeeeeehhh---------------------------------ccceEEEEeeeeehhhh
Confidence 2222211 1111 11222222 2245666543
Q ss_pred -C--CCcEEEEeCCCCCc----eEEecccCCCCeEEEEEccCC--CeEEEEeCCCcEEEEEeeccccccccChHHHHHHH
Q 040062 314 -Q--DRTITVWTTASPRP----LFVAKHFFTQSVVDLSWSPDG--YSLFACSLDGTVANFHFEVKELGHRLSDAELDELK 384 (689)
Q Consensus 314 -~--Dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spdg--~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~ 384 (689)
. .-.+++|-...... ...+...|...+...++.+.. ..+++++.||.++||-+...+-..+.... +....
T Consensus 425 ~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~-W~c~~ 503 (792)
T KOG1963|consen 425 FFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSN-WTCKA 503 (792)
T ss_pred ccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccc-eEEee
Confidence 2 23588997665443 334556788777777765532 27899999999999999654433221110 00001
Q ss_pred HhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 385 RSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 385 ~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
...| |...++.++||.||.+|+. +.|+++
T Consensus 504 i~sy--~k~~i~a~~fs~dGslla~-s~~~~I 532 (792)
T KOG1963|consen 504 IGSY--HKTPITALCFSQDGSLLAV-SFDDTI 532 (792)
T ss_pred eecc--ccCcccchhhcCCCcEEEE-ecCCEE
Confidence 1223 5667999999999976655 566666
No 187
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.70 E-value=1.2e-16 Score=165.39 Aligned_cols=286 Identities=15% Similarity=0.167 Sum_probs=195.2
Q ss_pred CEEEEEeCCCeEEEE--eCCcCC--CCCCC---C----cccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 26 LRFATGGGDHKVRIW--NMKSVG--KNFEN---D----ESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 26 ~~Latgs~Dg~V~IW--d~~~~~--~~~~~---~----~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
+..++...+...++| ++.... ..+.. . ......-.++..|...|..++|.+-...|++++.||.+.+|.
T Consensus 243 ~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~Wn 322 (577)
T KOG0642|consen 243 SISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWN 322 (577)
T ss_pred CccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhh
Confidence 345566667778888 544321 11110 0 112334447788999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC----------CeEEEEEe
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST----------GICTAVLR 164 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~----------~~~~~~l~ 164 (689)
++... .......+.+.+|++|.++|.|+++.+++.++++|+.||+|++|++.. ......+.
T Consensus 323 Lqk~~---------~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~ 393 (577)
T KOG0642|consen 323 LQKAK---------KSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLL 393 (577)
T ss_pred hcccC---------CccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhcccee
Confidence 94421 112223478999999999999999999999999999999999996531 13345678
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
||.+.|+.+++++....|++++.||++++|+...... ..+...... .+...+.+
T Consensus 394 Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~----g~Plsvd~--------------------- 447 (577)
T KOG0642|consen 394 GHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEH----GYPLSVDR--------------------- 447 (577)
T ss_pred ccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCcccc----CCcceEee---------------------
Confidence 9999999999999999999999999999999865444 222211110 00011111
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
..+.. .+.++...-+.-.++++.
T Consensus 448 ----~ss~~-----------------------------------------------------a~~~~s~~~~~~~~~~~e 470 (577)
T KOG0642|consen 448 ----TSSRP-----------------------------------------------------AHSLASFRFGYTSIDDME 470 (577)
T ss_pred ----ccchh-----------------------------------------------------Hhhhhhcccccccchhhh
Confidence 00000 001111111111222222
Q ss_pred CCCceEEeccc------CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeee
Q 040062 325 SPRPLFVAKHF------FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANL 398 (689)
Q Consensus 325 ~~~~~~~~~~~------h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l 398 (689)
....+..+... ....+.-+.++|.+.+.+++..|+.|+++|..++++.+.+. .|...++++
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~-------------a~~~svtsl 537 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMV-------------AHKDSVTSL 537 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccchhee-------------eccceecce
Confidence 22222222110 12347788999999999999999999999999998875433 456679999
Q ss_pred ecCchhhhhHhhccccce
Q 040062 399 AETPAQLLLEAASAKETT 416 (689)
Q Consensus 399 ~~Spdg~~Las~s~DG~v 416 (689)
++.|+|.+|++++.||++
T Consensus 538 ai~~ng~~l~s~s~d~sv 555 (577)
T KOG0642|consen 538 AIDPNGPYLMSGSHDGSV 555 (577)
T ss_pred eecCCCceEEeecCCcee
Confidence 999999999999999999
No 188
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.70 E-value=4.4e-15 Score=161.63 Aligned_cols=275 Identities=14% Similarity=0.215 Sum_probs=199.6
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcc
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIE 113 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~ 113 (689)
+.+.||+++.. ...-..+ .-...|.|+.|+| +..+||.|..+|.|.+||+..+....
T Consensus 222 ~~~~vW~~~~p----------~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~----------- 279 (555)
T KOG1587|consen 222 GVLLVWSLKNP----------NTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP----------- 279 (555)
T ss_pred ceEEEEecCCC----------CCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC-----------
Confidence 57999999861 1222223 3567899999999 67789999999999999999875321
Q ss_pred cceEEEEEecCCCCEEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCeEE------EEEe------cCCCCeEEEEEccC-
Q 040062 114 NWKVAMTLRGHTADVVDLNWSPDDS--ILASGSLDNTIHIWNMSTGICT------AVLR------GHSSLVKGVAWDPI- 178 (689)
Q Consensus 114 ~~~~~~~l~~h~~~V~~l~~spdg~--~Lasgs~Dg~I~vwd~~~~~~~------~~l~------~h~~~V~~l~~spd- 178 (689)
.+........|..+|+.+.|..+.. -+++++.||.|..|+++.-... .... .....++++.|.+.
T Consensus 280 ~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~ 359 (555)
T KOG1587|consen 280 PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD 359 (555)
T ss_pred CcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCC
Confidence 1123334456899999999976544 5999999999999988653221 1111 12246788999884
Q ss_pred CCEEEEEeCCCeEEEEECCCCcce--eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC-Cceeee
Q 040062 179 GSFIASQSDDKTVIIWRTSDWSLA--HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG-EWAATF 255 (689)
Q Consensus 179 g~~las~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~-~~~~~~ 255 (689)
-..|+.|+++|.|.--+....... ..++.+.....+...++.+.++|-+..++.+.+ ...+++|... .....+
T Consensus 360 p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~ 435 (555)
T KOG1587|consen 360 PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLL 435 (555)
T ss_pred CceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeec----cceeEeccccCCCCcch
Confidence 467889999998877333222111 222333333445566999999999877777665 5778899877 666667
Q ss_pred eecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC--CceEEec
Q 040062 256 DFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP--RPLFVAK 333 (689)
Q Consensus 256 ~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~--~~~~~~~ 333 (689)
.+..+...|+.++|||.. ..+|+++..||.|.|||+... +++....
T Consensus 436 ~~~~~~~~v~~vaWSptr--------------------------------pavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 436 SLDSSPDYVTDVAWSPTR--------------------------------PAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred hhhhccceeeeeEEcCcC--------------------------------ceEEEEEcCCCceehhhhhccccCCccccc
Confidence 777888889999999984 368999999999999999754 4444443
Q ss_pred ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 334 HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 334 ~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
. +....+.+.|+++|+.|++|...|.+++|++..
T Consensus 484 ~-~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 484 V-CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred c-cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 3 355678888999999999999999999999964
No 189
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.70 E-value=9e-16 Score=160.00 Aligned_cols=277 Identities=18% Similarity=0.259 Sum_probs=189.1
Q ss_pred EcCCCCEEEE--EeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCC
Q 040062 21 VQPGALRFAT--GGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKP 97 (689)
Q Consensus 21 ~spdg~~Lat--gs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~ 97 (689)
|+-+..++|+ .+..|.|-||++...+.-- ...+-.+. ....|+.+.|.| |...||.+++||.|+||.+..
T Consensus 587 fcan~~rvAVPL~g~gG~iai~el~~PGrLP------Dgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a 659 (1012)
T KOG1445|consen 587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLP------DGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTA 659 (1012)
T ss_pred eeeccceEEEEecCCCceEEEEEcCCCCCCC------cccccccc-cCceeeecccCCCChHHeeecccCceEEEEEecc
Confidence 4455566665 3446899999998632211 11222222 345799999999 888999999999999999987
Q ss_pred CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEc
Q 040062 98 GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD 176 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~s 176 (689)
+..... .......+..|...|+.|.|+|= ...|++++.|.+|++||+.++.....+.+|++.|.+++|+
T Consensus 660 ~gl~e~----------~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWS 729 (1012)
T KOG1445|consen 660 NGLPEN----------EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWS 729 (1012)
T ss_pred CCCCcc----------cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEEC
Confidence 642211 11456778899999999999995 4589999999999999999999999999999999999999
Q ss_pred cCCCEEEEEeCCCeEEEEECCCCcce-eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeee
Q 040062 177 PIGSFIASQSDDKTVIIWRTSDWSLA-HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATF 255 (689)
Q Consensus 177 pdg~~las~s~Dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (689)
|+|+.+++.+.||+|++|+-++.+.. ++-.++. .+.-.++.|.-||+++++.+-+......+.+++......
T Consensus 730 pdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-----gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-- 802 (1012)
T KOG1445|consen 730 PDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV-----GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-- 802 (1012)
T ss_pred CCCcceeeeecCceEEEeCCCCCCCccccCCCCc-----cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC--
Confidence 99999999999999999998875432 2222221 123467889999999999876655555566665443221
Q ss_pred eecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc
Q 040062 256 DFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF 335 (689)
Q Consensus 256 ~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 335 (689)
..-.+..+..+|.-... ......+-++++|-.|..|.+|.+-...+...-...
T Consensus 803 ----~pl~t~~lDvaps~LvP-----------------------~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~ 855 (1012)
T KOG1445|consen 803 ----RPLYTQVLDVAPSPLVP-----------------------HYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAP 855 (1012)
T ss_pred ----CcceeeeecccCccccc-----------------------cccCCCceEEEecCCCceEEEEEecCCCceeeeccc
Confidence 11112223333321000 000112357888989999999998776665543333
Q ss_pred CCCCe--EEEEEccC
Q 040062 336 FTQSV--VDLSWSPD 348 (689)
Q Consensus 336 h~~~V--~~l~~spd 348 (689)
|...+ ..|+|.+.
T Consensus 856 f~sp~~hqGl~fl~K 870 (1012)
T KOG1445|consen 856 FMSPVGHQGLAFLQK 870 (1012)
T ss_pred ccCCCcccceeeecc
Confidence 33322 34555553
No 190
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.4e-14 Score=142.53 Aligned_cols=293 Identities=19% Similarity=0.299 Sum_probs=193.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCC-CCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKH-GRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspd-g~~Lasgs~Dg~I~i 92 (689)
.+.-++|++.-.-+|++..|-.|+|||-+. +....++ .....|+|++|-|. ++.|+.|+.. -|+|
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~kss------------t~pt~Lks~sQrnvtclawRPlsaselavgCr~-gIci 166 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS------------TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRA-GICI 166 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCC------------CCCceecchhhcceeEEEeccCCcceeeeeecc-eeEE
Confidence 578899999877889999999999999764 2233332 23567999999995 4577777764 5999
Q ss_pred EEcCCCCCccc---cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCeEEEEEecCCC
Q 040062 93 HEKKPGSGTTE---FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIHIWNMSTGICTAVLRGHSS 168 (689)
Q Consensus 93 wdl~~~~~~~~---~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~~~~~~~~l~~h~~ 168 (689)
|..+....... ..+.. -..+..-.+| ..|+.|+|.+||..|++++. |..|.|||..++.++......-+
T Consensus 167 W~~s~tln~~r~~~~~s~~------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTH------HLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred EEcCccccccccccccccc------chhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCC
Confidence 98765321100 00000 0123334455 68999999999999999885 56899999999988777655567
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEE-CCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWR-TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd-~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
.+.-+.|+||+.+|+.+.-|+..++|. .+++...+-.. +...+...+|+|+|++|+.+.......+.+..-.
T Consensus 240 g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-------gsgrvqtacWspcGsfLLf~~sgsp~lysl~f~~ 312 (445)
T KOG2139|consen 240 GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-------GSGRVQTACWSPCGSFLLFACSGSPRLYSLTFDG 312 (445)
T ss_pred ceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-------cCCceeeeeecCCCCEEEEEEcCCceEEEEeecC
Confidence 788999999999999999999999994 44444443332 2335899999999999888755433333322221
Q ss_pred cCCc-e---------eeeeec------C---CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcE
Q 040062 248 RGEW-A---------ATFDFL------G---HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNV 308 (689)
Q Consensus 248 ~~~~-~---------~~~~l~------~---h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 308 (689)
.... . ...++. + -.+...+++|.|.| .+
T Consensus 313 ~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG---------------------------------ey 359 (445)
T KOG2139|consen 313 EDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG---------------------------------EY 359 (445)
T ss_pred CCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC---------------------------------CE
Confidence 1100 0 000000 0 13456666676665 66
Q ss_pred EEEEeCC--------CcEEEEeCCCCCceEEeccc--CCCCeEEEEEcc---CCCeEEEEeCCCcEEEEEee
Q 040062 309 IAIGSQD--------RTITVWTTASPRPLFVAKHF--FTQSVVDLSWSP---DGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 309 lasgs~D--------g~I~iwd~~~~~~~~~~~~~--h~~~V~~l~~sp---dg~~L~sgs~DG~I~vwd~~ 367 (689)
||+.-.. ..|.+||.+..-++.....+ .......++|+| +|.+|.++=..|.|.-|++.
T Consensus 360 Lav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 360 LAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 7665443 34778888765554433211 122345667766 57778778778888888764
No 191
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.69 E-value=2.6e-16 Score=160.14 Aligned_cols=302 Identities=16% Similarity=0.138 Sum_probs=219.8
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs 85 (689)
.-.|.| .|..+.|...|..|++|+.|..|.+||.... ...+.-..+|...|..-.|-| +.+.|++++
T Consensus 138 L~~H~G-cVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~----------~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s 206 (559)
T KOG1334|consen 138 LNKHKG-CVNTVHFNQRGDVLASGSDDLQVVVWDWVSG----------SPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS 206 (559)
T ss_pred ccCCCC-ccceeeecccCceeeccCccceEEeehhhcc----------CcccccccccccchhhhhccCCCCCcCceecc
Confidence 346885 9999999999999999999999999999861 233444568988898888988 456899999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEE--
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAV-- 162 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~-- 162 (689)
.||.|++=.+...... .....+..|.+.|..++.-|+.. .|.+++.|+.+.-+|+++......
T Consensus 207 ~dgqvr~s~i~~t~~~--------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~ 272 (559)
T KOG1334|consen 207 RDGQVRVSEILETGYV--------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV 272 (559)
T ss_pred ccCceeeeeeccccce--------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee
Confidence 9999999777544211 33566778999999999999865 789999999999999987644332
Q ss_pred -EecCCC---CeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcce------eeccCcccccCCcccEEEEEEcCCCCeEE
Q 040062 163 -LRGHSS---LVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLA------HRTDGHWAKSLGSTFFRRLGWSPCGHFIT 231 (689)
Q Consensus 163 -l~~h~~---~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~------~~~~~~~~~~~~~~~i~~l~~spdg~~l~ 231 (689)
.+.+.. ....|+.+|.. ..+++++.|..+++||.+..... ..+..+.........|+++.|+.++.-|+
T Consensus 273 cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElL 352 (559)
T KOG1334|consen 273 CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELL 352 (559)
T ss_pred eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcccee
Confidence 233344 56788999966 48999999999999998754332 33332222224456699999998877776
Q ss_pred EecCCCCCccccceeecC--Cc-----------eeeeeecCCCCC--EEEEEEcCCccccccccccccccccccccCCcc
Q 040062 232 TTHGFQKPRHSAPVLERG--EW-----------AATFDFLGHNAP--IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~--~~-----------~~~~~l~~h~~~--v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
++..+. .++++... .. .....+.||... |..+-|
T Consensus 353 aSYnDe----~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNF--------------------------- 401 (559)
T KOG1334|consen 353 ASYNDE----DIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNF--------------------------- 401 (559)
T ss_pred eeeccc----ceEEeccccccCCCCCCCcchhhccchhhcccccccccceeee---------------------------
Confidence 665432 23333211 11 111124455332 223322
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
+.|...|+++|+.-|.|.||+-.+++.+..+...+. -|+||.=+|--..||+++.|..|+||--.+.+.
T Consensus 402 -----fGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 402 -----FGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred -----ccCccceEEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCCcccc
Confidence 244558999999999999999999998887766544 899999999999999999999999998755443
No 192
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.67 E-value=3.9e-14 Score=140.23 Aligned_cols=243 Identities=16% Similarity=0.214 Sum_probs=186.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~ 145 (689)
...++.+.|+.+...|..|+.|| .++|...... ...........|..+-|+ ..++|..+.
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~-----------------k~~~~~~~~~~IvEmLFS--SSLvaiV~~ 64 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFE-----------------KCFSKDTEGVSIVEMLFS--SSLVAIVSI 64 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchH-----------------HhhcccCCCeEEEEeecc--cceeEEEec
Confidence 34577778999999999999998 5677765431 111111123346666676 456666665
Q ss_pred CC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEE
Q 040062 146 DN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 146 Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
+. .+++++++.+..+..+. ....|.++.++ -+.|+++-++ .|+|||+++.++++++....... ..+..+++
T Consensus 65 ~qpr~Lkv~~~Kk~~~ICe~~-fpt~IL~VrmN--r~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~---~gl~AlS~ 137 (391)
T KOG2110|consen 65 KQPRKLKVVHFKKKTTICEIF-FPTSILAVRMN--RKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNP---KGLCALSP 137 (391)
T ss_pred CCCceEEEEEcccCceEEEEe-cCCceEEEEEc--cceEEEEEcc-cEEEEecccceeehhhhccCCCc---cceEeecc
Confidence 44 59999999888888877 66788899987 4456666555 49999999999999887653321 12555666
Q ss_pred cCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 224 SPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 224 spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
+..+.+++.-+... ...+.+|+..+......+..|.+++.+++|+++|
T Consensus 138 n~~n~ylAyp~s~t--~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G------------------------------ 185 (391)
T KOG2110|consen 138 NNANCYLAYPGSTT--SGDVVLFDTINLQPVNTINAHKGPLAALAFSPDG------------------------------ 185 (391)
T ss_pred CCCCceEEecCCCC--CceEEEEEcccceeeeEEEecCCceeEEEECCCC------------------------------
Confidence 66677888765433 5778899999999988999999999999999997
Q ss_pred CCCcEEEEEeCCCc-EEEEeCCCCCceEEecccCC-CCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 304 QPYNVIAIGSQDRT-ITVWTTASPRPLFVAKHFFT-QSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 304 ~~~~~lasgs~Dg~-I~iwd~~~~~~~~~~~~~h~-~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.+||+++..|+ ||||.+.+++.+..+..+.. ..|.+|+|+||+++|++.|..++|+||.++...
T Consensus 186 ---~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 186 ---TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred ---CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 89999999987 79999999999998886532 468999999999999999999999999997643
No 193
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=7.7e-15 Score=159.77 Aligned_cols=274 Identities=20% Similarity=0.235 Sum_probs=185.3
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeE--EEE--
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGIC--TAV-- 162 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~--~~~-- 162 (689)
+.+.||++.... .....+. ....|++++|+|.. .+|+.|..+|.|.+||++.+.. ...
T Consensus 222 ~~~~vW~~~~p~----------------~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPN----------------TPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS 284 (555)
T ss_pred ceEEEEecCCCC----------------CceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccc
Confidence 478999988652 2223333 46789999999964 5788888999999999987654 222
Q ss_pred --EecCCCCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCcceeeccCcc------cccCCcccEEEEEEcCCCCeEEE
Q 040062 163 --LRGHSSLVKGVAWDPIG--SFIASQSDDKTVIIWRTSDWSLAHRTDGHW------AKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 163 --l~~h~~~V~~l~~spdg--~~las~s~Dg~I~iwd~~~~~~~~~~~~~~------~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
...|..++..+.|..+. .-|++++.||.|..|+++............ ........+..+.|.+.....+.
T Consensus 285 ~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~Fi 364 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFI 364 (555)
T ss_pred cccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEE
Confidence 23588999999998754 348899999999999987654422211111 11133445788899886544444
Q ss_pred ecCCCCCccccceeecC-----CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 233 THGFQKPRHSAPVLERG-----EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~-----~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
.+.+.+........... ..+....+..|.++|.++.++|.+ ..
T Consensus 365 VGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~--------------------------------~k 412 (555)
T KOG1587|consen 365 VGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFY--------------------------------PK 412 (555)
T ss_pred EEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCc--------------------------------cc
Confidence 43333322221111111 112233567789999999999986 13
Q ss_pred EEEEEeCCCcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeeccccccccChHHHHHHHH
Q 040062 308 VIAIGSQDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKELGHRLSDAELDELKR 385 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~ 385 (689)
++++++ |.+++||... ...++..+.. +...|++++|||... .++++..||.|.+||+......-...
T Consensus 413 ~fls~g-DW~vriWs~~~~~~Pl~~~~~-~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s--------- 481 (555)
T KOG1587|consen 413 NFLSVG-DWTVRIWSEDVIASPLLSLDS-SPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLS--------- 481 (555)
T ss_pred eeeeec-cceeEeccccCCCCcchhhhh-ccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccc---------
Confidence 455555 9999999988 6667766654 466799999999764 56667789999999997655443222
Q ss_pred hccCCccCceeeeecCchhhhhHhhccccceeeeeeeccc
Q 040062 386 SRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDVQ 425 (689)
Q Consensus 386 ~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~~ 425 (689)
...+ ....+.+.|++.|++|+.|...|++ ..+.+..
T Consensus 482 ~~~~--~~~l~~~~~s~~g~~lavGd~~G~~--~~~~l~~ 517 (555)
T KOG1587|consen 482 QKVC--SPALTRVRWSPNGKLLAVGDANGTT--HILKLSE 517 (555)
T ss_pred cccc--ccccceeecCCCCcEEEEecCCCcE--EEEEcCc
Confidence 2222 3356788899999999999999998 5555443
No 194
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=1.9e-15 Score=155.13 Aligned_cols=209 Identities=20% Similarity=0.278 Sum_probs=159.8
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
..|+.++.||.+.|.+-. ++..+.+..|.+.|.|-+|+|||.-|+++++||.|++|.....
T Consensus 76 d~~~i~s~DGkf~il~k~------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM------- 136 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKS------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM------- 136 (737)
T ss_pred ceEEEEcCCceEEEeccc------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch-------
Confidence 468888999999998865 5777888999999999999999999999999999999986543
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ 185 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~ 185 (689)
...++......|.|++|.|+.+.++.+. .+.+.|=.+.....+...+.|.+-|.++.|++.++++++|
T Consensus 137 -----------LRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sg 204 (737)
T KOG1524|consen 137 -----------LRSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASG 204 (737)
T ss_pred -----------HHHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeec
Confidence 2233444567899999999987655554 3567777777777788889999999999999999999999
Q ss_pred eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEE
Q 040062 186 SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPII 265 (689)
Q Consensus 186 s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~ 265 (689)
++|-..+|||... .. |+ .-..|+.+|+
T Consensus 205 GED~kfKvWD~~G-~~----------------------------Lf------------------------~S~~~ey~IT 231 (737)
T KOG1524|consen 205 GEDFRFKIWDAQG-AN----------------------------LF------------------------TSAAEEYAIT 231 (737)
T ss_pred CCceeEEeecccC-cc----------------------------cc------------------------cCChhcccee
Confidence 9999999999632 11 11 1124677888
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
+++|+|+. .++.++. ++++ +.....++|..++|
T Consensus 232 Sva~npd~----------------------------------~~~v~S~-nt~R------------~~~p~~GSifnlsW 264 (737)
T KOG1524|consen 232 SVAFNPEK----------------------------------DYLLWSY-NTAR------------FSSPRVGSIFNLSW 264 (737)
T ss_pred eeeecccc----------------------------------ceeeeee-eeee------------ecCCCccceEEEEE
Confidence 88888873 4444443 2222 23344667888888
Q ss_pred ccCCCeEEEEeCCCcEEEEE
Q 040062 346 SPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 346 spdg~~L~sgs~DG~I~vwd 365 (689)
|+||..++.|+..|.+.+=.
T Consensus 265 S~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 265 SADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred cCCCceeeccccCceEEEee
Confidence 88888888888888766543
No 195
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.66 E-value=1.6e-13 Score=145.17 Aligned_cols=252 Identities=14% Similarity=0.188 Sum_probs=156.5
Q ss_pred ceEEEEEEcCCCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEE
Q 040062 14 MQIFSIDVQPGALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-DQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~ 91 (689)
.....+.++|++++|++++ .++.|.+|++.... ......... ..+....++|+|++++|++++. ++.|.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g--------~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~ 105 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDG--------ALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVS 105 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCC--------ceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEE
Confidence 3578899999999987765 47899999986310 012222222 3345678999999998888764 78999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEE-----Ee-
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAV-----LR- 164 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~-----l~- 164 (689)
+|++++..... .....+. +......++|+|++++|++++ .++.|.+||+.+...+.. ..
T Consensus 106 v~~~~~~g~~~-------------~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~ 171 (330)
T PRK11028 106 VSPLDKDGIPV-------------APIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTT 171 (330)
T ss_pred EEEECCCCCCC-------------Cceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceec
Confidence 99997432110 1122222 234467789999999886555 568999999976332211 11
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEECCC--Ccc--eeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRTSD--WSL--AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~~~--~~~--~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
........+.|+|++++++++.. +++|.+|+++. ++. +..+...........+...+.++|+++++++++...
T Consensus 172 ~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~-- 249 (330)
T PRK11028 172 VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTA-- 249 (330)
T ss_pred CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCC--
Confidence 12344678999999999988876 89999999973 222 222221111111222345688999999999985432
Q ss_pred ccccceeecCCceeeeeecCCC---CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-C
Q 040062 240 RHSAPVLERGEWAATFDFLGHN---APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-D 315 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~---~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-D 315 (689)
..+.+|+.........+.++. .....+.|+|+ +++|+++.. +
T Consensus 250 -~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~d---------------------------------g~~l~va~~~~ 295 (330)
T PRK11028 250 -SLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHS---------------------------------GKYLIAAGQKS 295 (330)
T ss_pred -CeEEEEEEeCCCCeEEEeEEEeccccCCceEECCC---------------------------------CCEEEEEEccC
Confidence 344455432221111122211 12234455555 477777665 8
Q ss_pred CcEEEEeCC
Q 040062 316 RTITVWTTA 324 (689)
Q Consensus 316 g~I~iwd~~ 324 (689)
+.|.+|+++
T Consensus 296 ~~v~v~~~~ 304 (330)
T PRK11028 296 HHISVYEID 304 (330)
T ss_pred CcEEEEEEc
Confidence 999999875
No 196
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.64 E-value=7.1e-15 Score=145.50 Aligned_cols=309 Identities=14% Similarity=0.129 Sum_probs=202.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCC
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDD 137 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg 137 (689)
.+.+.+|.++|+++.|+.++++|++|++|..+++|.++..-... .-+.+.... .|...|.||+|...+
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k-----------~~KPI~~~~~~H~SNIF~L~F~~~N 117 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRK-----------TPKPIGVMEHPHRSNIFSLEFDLEN 117 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhc-----------CCCCceeccCccccceEEEEEccCC
Confidence 34567899999999999999999999999999999987531000 002222222 355789999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEEecCC---CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 138 SILASGSLDNTIHIWNMSTGICTAVLRGHS---SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~---~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
.+|++|..+++|...|+++.+.+..+. |. +.|+.+..+|..+.|++.+.++.|.+||.+........-.. ...
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---AN~ 193 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---ANS 193 (609)
T ss_pred eeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee---cCC
Confidence 999999999999999999999888776 44 48999999999999999999999999999875521111111 111
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeee-e------ecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATF-D------FLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~-~------l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
...+..+.|.|..-.|+...... ....+|++......+ . +......-..+.|+|++
T Consensus 194 ~~~F~t~~F~P~~P~Li~~~~~~---~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G-------------- 256 (609)
T KOG4227|consen 194 GKNFYTAEFHPETPALILVNSET---GGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG-------------- 256 (609)
T ss_pred CccceeeeecCCCceeEEecccc---CCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC--------------
Confidence 22378889999876555543322 223355544332211 1 11112223456677765
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCC-------CCeEEEEEccCCCeEEEEeCCCc
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFT-------QSVVDLSWSPDGYSLFACSLDGT 360 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~-------~~V~~l~~spdg~~L~sgs~DG~ 360 (689)
+.|.+--....-.+||+-+.++... +..|. ..+.+++|.-| +.+++|+.+=.
T Consensus 257 -------------------~Q~msiRR~~~P~~~D~~S~R~~V~-k~D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~ 315 (609)
T KOG4227|consen 257 -------------------NQFMSIRRGKCPLYFDFISQRCFVL-KSDHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWG 315 (609)
T ss_pred -------------------CeehhhhccCCCEEeeeecccceeE-eccCCCCcceeeeeeeeeeeecc-eeeeccCcccc
Confidence 4444433334445677766544322 22222 24677888765 45999999999
Q ss_pred EEEEEeeccccccc---c-C-hHHHHH-H----HHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 361 VANFHFEVKELGHR---L-S-DAELDE-L----KRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 361 I~vwd~~~~~l~~~---l-~-~~~~~~-~----~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
|++|.+....-..- + . .+++.. + ......+|+.-++.+.|+|...+|++.+-...+ |+++
T Consensus 316 i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~--KlWS 385 (609)
T KOG4227|consen 316 IHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSF--KLWS 385 (609)
T ss_pred eEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhhe--eccc
Confidence 99999864221111 0 0 011000 0 012344688889999999999999998888887 6665
No 197
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.9e-14 Score=157.22 Aligned_cols=235 Identities=19% Similarity=0.216 Sum_probs=155.4
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCC
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPP 110 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~ 110 (689)
+..|.|||... .....+..|...+.+.+|+|||++|+.++.+ ..|.+||+.++..
T Consensus 183 ~~~i~i~d~dg------------~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~---------- 240 (429)
T PRK01742 183 PYEVRVADYDG------------FNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR---------- 240 (429)
T ss_pred eEEEEEECCCC------------CCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce----------
Confidence 46899999874 3345667788899999999999999988754 3699999987621
Q ss_pred CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEE--EEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe-
Q 040062 111 DIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHI--WNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS- 186 (689)
Q Consensus 111 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~v--wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s- 186 (689)
+.+..+.+| ...++|+|||+.|+.++ .+|.+.| ||+.+++. ..+..+...+....|+|||+.|+..+
T Consensus 241 -----~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~ 311 (429)
T PRK01742 241 -----KVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSD 311 (429)
T ss_pred -----EEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEEC
Confidence 223333333 34689999999888765 6776555 56666554 44555777788999999999877655
Q ss_pred CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEE
Q 040062 187 DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIV 266 (689)
Q Consensus 187 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~ 266 (689)
.++..+||+++......... .+.. ..
T Consensus 312 ~~g~~~I~~~~~~~~~~~~l----------------------------------------------------~~~~--~~ 337 (429)
T PRK01742 312 RSGSPQVYRMSASGGGASLV----------------------------------------------------GGRG--YS 337 (429)
T ss_pred CCCCceEEEEECCCCCeEEe----------------------------------------------------cCCC--CC
Confidence 57788888764311100000 0111 12
Q ss_pred EEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEc
Q 040062 267 VKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 267 v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 346 (689)
..|+|++ +.|+..+.++ +.+||+.+++....... + ....+.|+
T Consensus 338 ~~~SpDG---------------------------------~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~--~~~~~~~s 380 (429)
T PRK01742 338 AQISADG---------------------------------KTLVMINGDN-VVKQDLTSGSTEVLSST-F--LDESPSIS 380 (429)
T ss_pred ccCCCCC---------------------------------CEEEEEcCCC-EEEEECCCCCeEEecCC-C--CCCCceEC
Confidence 3455554 5565555544 55688887765433222 1 23567899
Q ss_pred cCCCeEEEEeCCCcEEEEEeec--cccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 347 PDGYSLFACSLDGTVANFHFEV--KELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 347 pdg~~L~sgs~DG~I~vwd~~~--~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
|||++|++++.+|.+.+|++.. +.... ....|.+.+...+|||-
T Consensus 381 PdG~~i~~~s~~g~~~~l~~~~~~G~~~~-------------~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 381 PNGIMIIYSSTQGLGKVLQLVSADGRFKA-------------RLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCCCEEEEEEcCCCceEEEEEECCCCceE-------------EccCCCCCCCCcccCCC
Confidence 9999999999999999888743 33332 22245556888999974
No 198
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.62 E-value=9.4e-14 Score=155.32 Aligned_cols=321 Identities=13% Similarity=0.143 Sum_probs=201.6
Q ss_pred eeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 9 VRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
..|.+ .|..++.+++. .+|++|+.||+|++||+...... ....+...++......+.++...+.++.+|.++.|
T Consensus 1045 ~Ehs~-~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~D 1119 (1431)
T KOG1240|consen 1045 HEHSS-AVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKD 1119 (1431)
T ss_pred hhccc-cccceeecCCCCceEEEecCCceEEEeeehhhhcC----cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCC
Confidence 35664 66677777655 99999999999999999863221 12345555665567889999999999999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC--CCEEEEEEcCC-CC-EEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT--ADVVDLNWSPD-DS-ILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~l~~spd-g~-~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
|.|++.+++........ ..+.+....+. ..|...+|... .+ .|+.+..-+.|..||++.......+
T Consensus 1120 G~v~~~~id~~~~~~~~----------~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~l 1189 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRV----------ATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRL 1189 (1431)
T ss_pred CeEEEEEccccccccce----------eeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhh
Confidence 99999999863211000 01222222222 22333444432 33 7888888999999999887666555
Q ss_pred ec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC---CCCeEEEecCCCC
Q 040062 164 RG--HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP---CGHFITTTHGFQK 238 (689)
Q Consensus 164 ~~--h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~l~~~~~~~~ 238 (689)
+. ..+.|++++.+|.+.++++|...|.+.+||++=..++.....+.. ..++.+...| .....++++..
T Consensus 1190 k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~-----~~i~~v~~~~~~~~~S~~vs~~~~-- 1262 (1431)
T KOG1240|consen 1190 KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPAR-----APIRHVWLCPTYPQESVSVSAGSS-- 1262 (1431)
T ss_pred hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCccc-----CCcceEEeeccCCCCceEEEeccc--
Confidence 42 347899999999999999999999999999987777766554432 2355555444 34455444331
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTI 318 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I 318 (689)
....+.+|+.....+...+...++...--.+.|.. ...+ ........+.....+.++.+|+.|..|
T Consensus 1263 ~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--------~~~k------p~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1263 SNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--------DARK------PDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred CCCceeeeecccCcceEEEEcCCCCcchhhhcccc--------cCCC------CCcccceeeecccCCceeeecCCccce
Confidence 34556677766555544444331111100011110 0000 000011112223355789999999999
Q ss_pred EEEeCCCCCce-----------------------------E-------------------E-------ecccCCCCeEEE
Q 040062 319 TVWTTASPRPL-----------------------------F-------------------V-------AKHFFTQSVVDL 343 (689)
Q Consensus 319 ~iwd~~~~~~~-----------------------------~-------------------~-------~~~~h~~~V~~l 343 (689)
+.||....... . . ....|...|++|
T Consensus 1329 R~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdm 1408 (1431)
T KOG1240|consen 1329 RKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDM 1408 (1431)
T ss_pred eeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhh
Confidence 99997632211 0 0 001256678888
Q ss_pred EEccCC-CeEEEEeCCCcEEEEE
Q 040062 344 SWSPDG-YSLFACSLDGTVANFH 365 (689)
Q Consensus 344 ~~spdg-~~L~sgs~DG~I~vwd 365 (689)
++.... .+|++++.||.|+||.
T Consensus 1409 a~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1409 ATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred hhhccCccEEEEecCCCeeeecC
Confidence 876654 5788899999999994
No 199
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=1.1e-14 Score=142.61 Aligned_cols=247 Identities=15% Similarity=0.142 Sum_probs=184.3
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
..+|++...|.|++||..+++.+..++++...+..+.|.. ....+.+++.||+|++||+|.......+...... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~---~ 117 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS---G 117 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC---C
Confidence 5688888899999999999999999999999999999987 4578999999999999999987766555433222 2
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee--eeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT--FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
..+.++...-.++.++++.........+.+|+.+.++.. .-...|...|++++|+|.
T Consensus 118 ~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~--------------------- 176 (376)
T KOG1188|consen 118 TPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS--------------------- 176 (376)
T ss_pred CcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC---------------------
Confidence 336666666678888887766666778889998877763 234579999999999998
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc---eEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeecc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP---LFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~ 369 (689)
+.++|++|+.||.|.|||++.... +.... .|..+|..+.|..++ +.|.+-+..++..+|+++.+
T Consensus 177 -----------~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~vi-N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 177 -----------DPNLLLSGSVDGLVNLFDTKKDNEEDALLHVI-NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred -----------CCCeEEeecccceEEeeecCCCcchhhHHHhh-cccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 458999999999999999976522 22111 246779999999887 35888889999999999876
Q ss_pred ccccccChHH-----HHH--------------------------------------------HHHhccCCccCceeeeec
Q 040062 370 ELGHRLSDAE-----LDE--------------------------------------------LKRSRYGDVRGRLANLAE 400 (689)
Q Consensus 370 ~l~~~l~~~~-----~~~--------------------------------------------~~~~~~g~~~~~I~~l~~ 400 (689)
.....+.... ... ......|+|..-|+++.|
T Consensus 245 ~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~ 324 (376)
T KOG1188|consen 245 SEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILF 324 (376)
T ss_pred ChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhh
Confidence 5322221110 000 000112334555778888
Q ss_pred CchhhhhHhhccccceeeeeee
Q 040062 401 TPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 401 Spdg~~Las~s~DG~v~~~~~~ 422 (689)
...+.+|.+|+.||.+ ..+.
T Consensus 325 ~~~~~~l~TGGEDG~l--~~Wk 344 (376)
T KOG1188|consen 325 DVKNDVLYTGGEDGLL--QAWK 344 (376)
T ss_pred hcccceeeccCCCceE--EEEe
Confidence 8889999999999999 5554
No 200
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.62 E-value=8.7e-15 Score=138.43 Aligned_cols=288 Identities=15% Similarity=0.175 Sum_probs=184.2
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSP 135 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~sp 135 (689)
.....++.|.+.|+++.|..+++ |.+|..-|.|++|++++.. ....++ .|...|+.+.--|
T Consensus 5 dP~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r-----------------~~~~~r~~g~~~it~lq~~p 66 (323)
T KOG0322|consen 5 DPFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTER-----------------DLPLIRLFGRLFITNLQSIP 66 (323)
T ss_pred CCeeEeccccchheehhhccchh-hhcccccceEEEEEeecCc-----------------cchhhhhhccceeeceeecC
Confidence 44566779999999999998775 8899999999999999873 334444 4667788888888
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccC-----CC----EEEEEeCCC-eEEEEECCCCcceeec
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI-----GS----FIASQSDDK-TVIIWRTSDWSLAHRT 205 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spd-----g~----~las~s~Dg-~I~iwd~~~~~~~~~~ 205 (689)
+ ..|.+-+.|..+.+|++.-+..+.. |+-.+.++.|.+. ++ .++.-++.. .+++-|......+...
T Consensus 67 ~-d~l~tqgRd~~L~lw~ia~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~ 142 (323)
T KOG0322|consen 67 N-DSLDTQGRDPLLILWTIAYSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIA 142 (323)
T ss_pred C-cchhhcCCCceEEEEEccCcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEcc
Confidence 7 5688889999999999976544332 3344445555432 11 111111100 1222232222222222
Q ss_pred cCcccccCCcccEEEEEEc-CCCCeEEEecCCCCCccccceeecCCc----------eeeeeecCCCCCEEEEEEcCCcc
Q 040062 206 DGHWAKSLGSTFFRRLGWS-PCGHFITTTHGFQKPRHSAPVLERGEW----------AATFDFLGHNAPIIVVKFNHSMF 274 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~s-pdg~~l~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~h~~~v~~v~fsp~~~ 274 (689)
........ ..+.+..|. .++.+++...++. ...+.+|+.... ........|..+|.++.|.+..
T Consensus 143 dd~~~~Kl--gsvmc~~~~~~c~s~~lllaGyE--sghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~- 217 (323)
T KOG0322|consen 143 DDSERSKL--GSVMCQDKDHACGSTFLLLAGYE--SGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSC- 217 (323)
T ss_pred Cchhcccc--CceeeeeccccccceEEEEEecc--CCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhh-
Confidence 22222212 224444433 2344444433322 344556665554 3444455788899999887553
Q ss_pred ccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC---ceEEecccCCCCeEEEEEccCCCe
Q 040062 275 RRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR---PLFVAKHFFTQSVVDLSWSPDGYS 351 (689)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg~~ 351 (689)
+.=++|+.+..+..|+++... ++.......+-.|..+..-||++.
T Consensus 218 --------------------------------~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 218 --------------------------------DRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred --------------------------------cCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcE
Confidence 334566777778888776431 111111112345888999999999
Q ss_pred EEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 352 LFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 352 L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
|+++++|+.||||+.++...+..+. -|++.|++++|+||..++|++|.|++|
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLk-------------yHsagvn~vAfspd~~lmAaaskD~rI 317 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLK-------------YHSAGVNAVAFSPDCELMAAASKDARI 317 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhh-------------hhhcceeEEEeCCCCchhhhccCCceE
Confidence 9999999999999999876654332 356679999999999999999999998
No 201
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=6.5e-15 Score=151.62 Aligned_cols=224 Identities=21% Similarity=0.299 Sum_probs=160.4
Q ss_pred eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-
Q 040062 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD- 136 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd- 136 (689)
+...+.+|.|.|+|++|+.+|.+|++|++|-.+.|||.-..+ .....-.+|...|.++.|-|.
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~K----------------llhsI~TgHtaNIFsvKFvP~t 105 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYK----------------LLHSISTGHTANIFSVKFVPYT 105 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcc----------------eeeeeecccccceeEEeeeccC
Confidence 345678999999999999999999999999999999987542 223334689999999999984
Q ss_pred -CCEEEEEeCCCeEEEEEcCC----------CeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCccee-
Q 040062 137 -DSILASGSLDNTIHIWNMST----------GICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAH- 203 (689)
Q Consensus 137 -g~~Lasgs~Dg~I~vwd~~~----------~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~- 203 (689)
++++++|..|..|++||+.. .+....+..|...|+.|+-.|++ ..+.++++||+|+-||++....-.
T Consensus 106 nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 106 NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 56999999999999999974 23455567799999999999988 889999999999999997532111
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
....+ +..+ .+...--...++..+|..
T Consensus 186 ~~~~~---------~~l~----------------------------------ny~~~lielk~ltisp~r---------- 212 (758)
T KOG1310|consen 186 DEDCP---------SILV----------------------------------NYNPQLIELKCLTISPSR---------- 212 (758)
T ss_pred ccccc---------HHHH----------------------------------HhchhhheeeeeeecCCC----------
Confidence 00000 0000 000011234567777763
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC------------------CceEEecccCC--------
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP------------------RPLFVAKHFFT-------- 337 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~------------------~~~~~~~~~h~-------- 337 (689)
..+|++|+.|-..++||.+.. +++..+...|-
T Consensus 213 ----------------------p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~ 270 (758)
T KOG1310|consen 213 ----------------------PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLD 270 (758)
T ss_pred ----------------------CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccc
Confidence 478999999999999994311 01222222222
Q ss_pred ---CCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 338 ---QSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 338 ---~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
..++.+.|+|+|.-|++.-..-.|++||+..++-.
T Consensus 271 ~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~ 308 (758)
T KOG1310|consen 271 RYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP 308 (758)
T ss_pred cceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence 12577899999987777655568999999876643
No 202
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.60 E-value=9.9e-13 Score=130.37 Aligned_cols=184 Identities=14% Similarity=0.192 Sum_probs=143.9
Q ss_pred ceEEEEEEcCCCCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
..|..+-|+.. ++|..+. -..+++++++. ...++.+. ....|.+|+++. +.|+.+=.+. |.
T Consensus 47 ~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk-----------~~~ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-Iy 109 (391)
T KOG2110|consen 47 VSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKK-----------KTTICEIF-FPTSILAVRMNR--KRLVVCLEES-IY 109 (391)
T ss_pred eEEEEeecccc--eeEEEecCCCceEEEEEccc-----------CceEEEEe-cCCceEEEEEcc--ceEEEEEccc-EE
Confidence 45667777654 4444443 34588888876 56666665 556799999974 4677666554 99
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEe---cCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLR---GHTADVVDLNWSPDDSILASGS--LDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~Lasgs--~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|||+.+. +.+.++. .+...+.++.++..+.+|+.=+ ..|.|++||+.+-+.+..+..|
T Consensus 110 IydI~~M-----------------klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH 172 (391)
T KOG2110|consen 110 IYDIKDM-----------------KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAH 172 (391)
T ss_pred EEecccc-----------------eeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEec
Confidence 9999987 3443333 4566688888888888988643 4689999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCe-EEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKT-VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+.+.+++|+++|.+|||+++.|+ ||+|.+.+++.+.++..... ...|.+++|++++++|++++.
T Consensus 173 ~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~----~~~IySL~Fs~ds~~L~~sS~ 238 (391)
T KOG2110|consen 173 KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY----PVSIYSLSFSPDSQFLAASSN 238 (391)
T ss_pred CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce----eeEEEEEEECCCCCeEEEecC
Confidence 999999999999999999999997 68999999999998875533 345899999999999998865
No 203
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.60 E-value=2.4e-13 Score=132.31 Aligned_cols=348 Identities=16% Similarity=0.166 Sum_probs=213.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEcC
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-SDDQVILIHEKK 96 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~Dg~I~iwdl~ 96 (689)
-+.|||+|+++|+++.- .+.|-|.++ .+..+.+. --..|..+.|..|..+++.+ ..|+.|.+|++.
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~t-----------lq~~qlf~-cldki~yieW~ads~~ilC~~yk~~~vqvwsl~ 79 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSET-----------LQLHQLFL-CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLV 79 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccch-----------hhHHHHHH-HHHHhhheeeeccceeeeeeeeccceEEEEEee
Confidence 47899999999998874 888888876 33333222 34568889999888776655 567899999997
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
.. +-...+......+..++|||||+ +|.+...|-.|.+|.+.+.+.... .-....+.+++|
T Consensus 80 Qp-----------------ew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f 141 (447)
T KOG4497|consen 80 QP-----------------EWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAF 141 (447)
T ss_pred cc-----------------eeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEE
Confidence 65 44556666788899999999996 666777899999999987665443 323455689999
Q ss_pred ccCCCEEEEEeCCC---eEEEEECCCCcceeeccCcccc--------------------------cCCcccEEEEEEcCC
Q 040062 176 DPIGSFIASQSDDK---TVIIWRTSDWSLAHRTDGHWAK--------------------------SLGSTFFRRLGWSPC 226 (689)
Q Consensus 176 spdg~~las~s~Dg---~I~iwd~~~~~~~~~~~~~~~~--------------------------~~~~~~i~~l~~spd 226 (689)
+|||++.+..+.-. .+.|..-..+.++..+...... ......+..+.|+|.
T Consensus 142 ~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~ 221 (447)
T KOG4497|consen 142 HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPC 221 (447)
T ss_pred CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccc
Confidence 99999888775421 1111111111111111111000 001122567788888
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecC----C---------------CCCEEEEEEcCCcccccccccccc---
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLG----H---------------NAPIIVVKFNHSMFRRNSASSQEV--- 284 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----h---------------~~~v~~v~fsp~~~~~~~~~~~~~--- 284 (689)
+++|++++.++. +++.+.-+|+..-.+.. | .-...++.|.|.....-.....+.
T Consensus 222 ~qflavGsyD~~----lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE 297 (447)
T KOG4497|consen 222 NQFLAVGSYDQM----LRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYE 297 (447)
T ss_pred cceEEeeccchh----hhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhh
Confidence 888888765432 22333223322111100 0 001234555554322111111100
Q ss_pred ---------ccc--cccccCCcccccCccCCCCcEEEEEeCC--CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCe
Q 040062 285 ---------KAA--PVGWTNGTSKIGGKESQPYNVIAIGSQD--RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYS 351 (689)
Q Consensus 285 ---------~~~--~~~~~~~~~~~~~~~s~~~~~lasgs~D--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~ 351 (689)
+.. ....++........++.|..++++-... +.+.+||++..+...++.. ..+|....|+|....
T Consensus 298 ~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQ--k~piraf~WdP~~pr 375 (447)
T KOG4497|consen 298 QQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQ--KHPIRAFEWDPGRPR 375 (447)
T ss_pred hhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhh--ccceeEEEeCCCCce
Confidence 000 0011122222233456677777776543 6799999998877666654 567999999999999
Q ss_pred EEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 352 LFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 352 L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
|+.+.....+++|..........- +.. -.|..+.|.-+|..|+-.+.|.-.
T Consensus 376 L~vctg~srLY~W~psg~~~V~vP-------------~~G-F~i~~l~W~~~g~~i~l~~kDafc 426 (447)
T KOG4497|consen 376 LVVCTGKSRLYFWAPSGPRVVGVP-------------KKG-FNIQKLQWLQPGEFIVLCGKDAFC 426 (447)
T ss_pred EEEEcCCceEEEEcCCCceEEecC-------------CCC-ceeeeEEecCCCcEEEEEcCCceE
Confidence 999888888999987653322110 111 158999999999998888877654
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.60 E-value=1.1e-12 Score=139.16 Aligned_cols=313 Identities=14% Similarity=0.159 Sum_probs=184.7
Q ss_pred CEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 040062 26 LRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 26 ~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~ 104 (689)
+++ ++-..++.|.|.|..+ .+.+..+......-..+.|+|||+++.+++.||.|.++|+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t-----------~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~------ 68 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGAT-----------NKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATG------ 68 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSS------
T ss_pred cEEEEEecCCCEEEEEECCC-----------CeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcc------
Confidence 444 4455689999999987 7888888765444455789999999999999999999999988
Q ss_pred CCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecC-------CCCeEEEEEc
Q 040062 105 GSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAVLRGH-------SSLVKGVAWD 176 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h-------~~~V~~l~~s 176 (689)
+.+.++... .....+++|+||++++++. .++.+.++|.++.+.++.+... .+.+.+|..+
T Consensus 69 -----------~~v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s 136 (369)
T PF02239_consen 69 -----------KVVATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS 136 (369)
T ss_dssp -----------SEEEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-
T ss_pred -----------cEEEEEecC-CCcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEec
Confidence 567777643 4578899999999888765 7899999999999999887643 3567888888
Q ss_pred cCCCEEEEE-eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeee
Q 040062 177 PIGSFIASQ-SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATF 255 (689)
Q Consensus 177 pdg~~las~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (689)
|....++.. -+-+.|-+.|..+.+........ ...+.....|+|++++++++... ...+.+++..+.....
T Consensus 137 ~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~-----~g~~~~D~~~dpdgry~~va~~~---sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 137 PGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK-----VGRFPHDGGFDPDGRYFLVAANG---SNKIAVIDTKTGKLVA 208 (369)
T ss_dssp SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE-------TTEEEEEE-TTSSEEEEEEGG---GTEEEEEETTTTEEEE
T ss_pred CCCCEEEEEEccCCeEEEEEeccccccceeeec-----ccccccccccCcccceeeecccc---cceeEEEeeccceEEE
Confidence 888755554 44578888887765433221111 12236789999999998775332 2244455555444333
Q ss_pred eec----CCCCCEEEE-------EEcCC--cccc-ccccccccc-ccccccc------CCcccccCccCCCCcEEEEE--
Q 040062 256 DFL----GHNAPIIVV-------KFNHS--MFRR-NSASSQEVK-AAPVGWT------NGTSKIGGKESQPYNVIAIG-- 312 (689)
Q Consensus 256 ~l~----~h~~~v~~v-------~fsp~--~~~~-~~~~~~~~~-~~~~~~~------~~~~~~~~~~s~~~~~lasg-- 312 (689)
.+. .|..+...+ .|... +... ......... .....|. ..........+++++++.+.
T Consensus 209 ~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~s~~vwvd~~ 288 (369)
T PF02239_consen 209 LIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPDSRYVWVDTF 288 (369)
T ss_dssp EEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT-SEEEEE-T
T ss_pred EeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCCCccEEeecc
Confidence 221 122222211 11111 1110 000000000 0011111 11111334458888999988
Q ss_pred --eCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC--cEEEEEeecccccccc
Q 040062 313 --SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG--TVANFHFEVKELGHRL 375 (689)
Q Consensus 313 --s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG--~I~vwd~~~~~l~~~l 375 (689)
...+.|.++|.++.+.+..+.......+.++.|++||+++..+.+++ .|.+||-.+.++..++
T Consensus 289 ~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i 355 (369)
T PF02239_consen 289 LNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRI 355 (369)
T ss_dssp T-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEE
Confidence 44588999999998777666543344599999999999888766554 5999999887776543
No 205
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.59 E-value=1.7e-14 Score=148.65 Aligned_cols=173 Identities=17% Similarity=0.274 Sum_probs=136.1
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee-cCCCCcEEEEEEcC--CCCEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL-RDHFGSVNCVRWAK--HGRYIA 82 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fsp--dg~~La 82 (689)
....+|.| -|+|++|+.||.+|++|+.|-.+.|||.-. .++++.+ .+|...|.|+.|-| +.+.++
T Consensus 44 ~eL~GH~G-CVN~LeWn~dG~lL~SGSDD~r~ivWd~~~-----------~KllhsI~TgHtaNIFsvKFvP~tnnriv~ 111 (758)
T KOG1310|consen 44 AELTGHTG-CVNCLEWNADGELLASGSDDTRLIVWDPFE-----------YKLLHSISTGHTANIFSVKFVPYTNNRIVL 111 (758)
T ss_pred hhhccccc-eecceeecCCCCEEeecCCcceEEeecchh-----------cceeeeeecccccceeEEeeeccCCCeEEE
Confidence 35578996 999999999999999999999999999875 5666665 58999999999999 567899
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeE--
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGIC-- 159 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~-- 159 (689)
+|+.|..|++||+...+.... +-..-.....+..|...|..|+-.|++ +.+.+++.||+|+-+|++....
T Consensus 112 sgAgDk~i~lfdl~~~~~~~~-------d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~ 184 (758)
T KOG1310|consen 112 SGAGDKLIKLFDLDSSKEGGM-------DHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCN 184 (758)
T ss_pred eccCcceEEEEeccccccccc-------ccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCC
Confidence 999999999999986432111 111114556677899999999999998 6899999999999999986321
Q ss_pred -----EEE---EecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECC
Q 040062 160 -----TAV---LRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 160 -----~~~---l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~ 197 (689)
... +...--..+|++.+|.. .+|++|+.|--.++||.+
T Consensus 185 p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 185 PDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred ccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111 11112356789999954 689999999999999964
No 206
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.59 E-value=8.4e-14 Score=133.49 Aligned_cols=211 Identities=19% Similarity=0.326 Sum_probs=149.9
Q ss_pred ecCceeeecCceEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-C
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGA-----LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-H 77 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg-----~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-d 77 (689)
+++. +.|. .+++.+-|.|+. .+|||.+ -.+|||.+...+..+.... .-....-..+..++++..|+. +
T Consensus 89 ~~a~-fd~~-YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~--~L~~~kns~~~aPlTSFDWne~d 162 (364)
T KOG0290|consen 89 EDAN-FDHP-YPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQS--VLNNNKNSEFCAPLTSFDWNEVD 162 (364)
T ss_pred ccCC-CCCC-CCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhh--hhccCcccccCCcccccccccCC
Confidence 3444 5677 799999999987 3567655 3799999875222111100 000111234667899999997 7
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCC
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMST 156 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~ 156 (689)
-++|.+++-|-+..|||++++.. ......+..|...|.+++|..++. .||+++.||.|++||++.
T Consensus 163 p~~igtSSiDTTCTiWdie~~~~--------------~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGVS--------------GTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cceeEeecccCeEEEEEEeeccc--------------cceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecc
Confidence 78999999999999999998621 145677889999999999998654 899999999999999864
Q ss_pred Ce------------------------------------------------EEEEEecCCCCeEEEEEccCC-CEEEEEeC
Q 040062 157 GI------------------------------------------------CTAVLRGHSSLVKGVAWDPIG-SFIASQSD 187 (689)
Q Consensus 157 ~~------------------------------------------------~~~~l~~h~~~V~~l~~spdg-~~las~s~ 187 (689)
.+ .+..+++|.+.|.+|+|.|.. ..|+++++
T Consensus 229 leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD 308 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD 308 (364)
T ss_pred cccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC
Confidence 21 122456899999999999954 78999999
Q ss_pred CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC-CCCeEEEecC
Q 040062 188 DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP-CGHFITTTHG 235 (689)
Q Consensus 188 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~ 235 (689)
|..+.|||+.+.-.. ....+.........|..+.|++ .+..|+.+.+
T Consensus 309 D~qaliWDl~q~~~~-~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 309 DCQALIWDLQQMPRE-NGEDPILAYTAGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceEEEEeccccccc-CCCCchhhhhccceeeeeeecccCCCEEEEEec
Confidence 999999999764331 1111111112234588999995 4667776644
No 207
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.58 E-value=1e-12 Score=127.95 Aligned_cols=290 Identities=17% Similarity=0.289 Sum_probs=188.9
Q ss_pred eEEEEEEcCCCCEEEEE-eCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFATG-GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latg-s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~i 92 (689)
.|.-+.|.-|.-+++++ ..|+.|.+|++.. ++-.+.+......+.+++|||||+ .|.+...|-.|.+
T Consensus 50 ki~yieW~ads~~ilC~~yk~~~vqvwsl~Q-----------pew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 50 KIVYIEWKADSCHILCVAYKDPKVQVWSLVQ-----------PEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITV 118 (447)
T ss_pred HhhheeeeccceeeeeeeeccceEEEEEeec-----------ceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence 57778888888776665 5588999999986 788888888889999999999996 5556667899999
Q ss_pred EEcCCCCCccc-----------cCCCC-------CC---------CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q 040062 93 HEKKPGSGTTE-----------FGSGE-------PP---------DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 93 wdl~~~~~~~~-----------~~~~~-------~~---------~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~ 145 (689)
|.+.+...... |.... .. ....|.....+.-.+-+.+.+.|+|||+.|+
T Consensus 119 WSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~la---- 194 (447)
T KOG4497|consen 119 WSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLA---- 194 (447)
T ss_pred EEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEE----
Confidence 99987532100 00000 00 1223333444444455556666666665444
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce-----------------------
Q 040062 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA----------------------- 202 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~----------------------- 202 (689)
+||---.-.+..+. ..-.+..++|+|.+++|+.|+.|+.+|+-+--+++..
T Consensus 195 -----Vwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 195 -----VWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFS 268 (447)
T ss_pred -----Eecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcc
Confidence 45432222222222 2356888999999999999999999988552111110
Q ss_pred -------------------------------------eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 203 -------------------------------------HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 203 -------------------------------------~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
+.+..+.........+..++|++|..++++-+. ..-..+-+
T Consensus 269 ~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd--~~PnalW~ 346 (447)
T KOG4497|consen 269 IVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRND--KYPNALWL 346 (447)
T ss_pred hhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecC--CCCceEEE
Confidence 011111111111233677899999999998654 33455667
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
|+....+....+ ....+|....|.|.. ..|+.+....++++|....
T Consensus 347 Wdlq~l~l~avL-iQk~piraf~WdP~~---------------------------------prL~vctg~srLY~W~psg 392 (447)
T KOG4497|consen 347 WDLQNLKLHAVL-IQKHPIRAFEWDPGR---------------------------------PRLVVCTGKSRLYFWAPSG 392 (447)
T ss_pred Eechhhhhhhhh-hhccceeEEEeCCCC---------------------------------ceEEEEcCCceEEEEcCCC
Confidence 777655443222 346789999999886 4555555566799999877
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEE
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVAN 363 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~v 363 (689)
...+..-.. +-.|.++.|.-+|..++.++.|.....
T Consensus 393 ~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDafc~a 428 (447)
T KOG4497|consen 393 PRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDAFCVA 428 (447)
T ss_pred ceEEecCCC--CceeeeEEecCCCcEEEEEcCCceEEE
Confidence 555555443 356999999999999999999875443
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.5e-14 Score=144.04 Aligned_cols=185 Identities=17% Similarity=0.222 Sum_probs=134.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
.+++|+.+|..|++|+.||++|||+... ...+.....|.+.|.++.|+|||++|++-+.| ..+||+.+
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps-----------~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~ 215 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPS-----------MLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVN 215 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCc-----------chhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEec
Confidence 7899999999999999999999999775 45566677899999999999999999999999 89999999
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC---C--EEEEEeCCCeEEEEEcCCCeE-----EEEEecC
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD---S--ILASGSLDNTIHIWNMSTGIC-----TAVLRGH 166 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg---~--~Lasgs~Dg~I~vwd~~~~~~-----~~~l~~h 166 (689)
++........ .........+.|+.|+ . .++.....+.|+.||+..... .......
T Consensus 216 ~g~~~a~~t~---------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~ 280 (398)
T KOG0771|consen 216 TGAALARKTP---------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR 280 (398)
T ss_pred cCchhhhcCC---------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc
Confidence 9843222110 1223345667777766 2 222333445666666543221 1111223
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
...|.+++.+++|++++.|+.||.|-|++..+.+..+.+... ....|+.+.|+||.++++..
T Consensus 281 ~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~a-----H~~~VT~ltF~Pdsr~~~sv 342 (398)
T KOG0771|consen 281 FKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEA-----HLGFVTGLTFSPDSRYLASV 342 (398)
T ss_pred cCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhh-----heeeeeeEEEcCCcCccccc
Confidence 457899999999999999999999999999887776655432 12247777777777766654
No 209
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=4.7e-12 Score=131.93 Aligned_cols=318 Identities=13% Similarity=0.176 Sum_probs=199.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-----eCC-
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-----SDD- 87 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-----s~D- 87 (689)
.++...++|++|+++|.+.. ..++|++... ...+.+.... .+.++.|+|.|.||.+= ..+
T Consensus 35 ~~~~v~~~S~~G~lfA~~~~-~~v~i~~~~~-----------~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 35 RPCNVFAYSNNGRLFAYSDN-QVVKVFEIAT-----------LKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPK 100 (566)
T ss_pred CcceeEEEcCCCcEEEEEcC-CeEEEEEccC-----------CcEEEEeccc--eeeeeeecccccccccccccccccCC
Confidence 45788999999999887665 6899999886 3233333222 68999999999998752 112
Q ss_pred ----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 88 ----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 88 ----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
-.+.+|++.++. ....+......-+++.|+.|..+. +--..+.+++|++........
T Consensus 101 ~~~~pn~~v~~vet~~-----------------~~s~~q~k~Q~~W~~qfs~dEsl~-arlv~nev~f~~~~~f~~~~~- 161 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGV-----------------QRSQIQKKMQNGWVPQFSIDESLA-ARLVSNEVQFYDLGSFKTIQH- 161 (566)
T ss_pred CCCCCceeeeeeccce-----------------ehhheehhhhcCcccccccchhhh-hhhhcceEEEEecCCccceee-
Confidence 346788888742 222222111222689999887643 333467899999987443332
Q ss_pred ecCCCCeEEEEEccCC--CEEEE-----EeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec--
Q 040062 164 RGHSSLVKGVAWDPIG--SFIAS-----QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH-- 234 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg--~~las-----~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~-- 234 (689)
+-|...|..+.++|.+ .++|+ .+.-..|+||..........+... .-....-..+.|.+-|+-|++..
T Consensus 162 kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~k---sFFkadkvqm~WN~~gt~LLvLast 238 (566)
T KOG2315|consen 162 KLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANK---SFFKADKVQMKWNKLGTALLVLAST 238 (566)
T ss_pred eeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhc---cccccceeEEEeccCCceEEEEEEE
Confidence 2367889999999964 34443 344567999987632222111110 00011124577888887555432
Q ss_pred CCCC------CccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc--------ccccccccccCCcccccC
Q 040062 235 GFQK------PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ--------EVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 235 ~~~~------~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~ 300 (689)
..+. ....++++........+.+. ..++|.++.|++++..+.....- ..+...+......-....
T Consensus 239 dVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~df~egpRN~~ 317 (566)
T KOG2315|consen 239 DVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVFDFPEGPRNTA 317 (566)
T ss_pred eecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCEeEeCCCCCccce
Confidence 2111 12334445554334444432 47999999999998444332211 222222222233333345
Q ss_pred ccCCCCcEEEEEeCC---CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC------CCcEEEEEeecccc
Q 040062 301 KESQPYNVIAIGSQD---RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL------DGTVANFHFEVKEL 371 (689)
Q Consensus 301 ~~s~~~~~lasgs~D---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------DG~I~vwd~~~~~l 371 (689)
.+++.+++|+.+|.+ |.|-|||+.+.+.+..+.. ..-+-+.|+|||+++++++. |+.++||++....+
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a---~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l 394 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA---ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLL 394 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccchhhcccccc---CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCcee
Confidence 668899999999876 7899999999888776653 34567899999999999875 88999999975544
No 210
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=1.5e-13 Score=150.35 Aligned_cols=221 Identities=15% Similarity=0.187 Sum_probs=148.8
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGD---HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~D---g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
+..|. ..|.+..|||||++|+..+.+ ..|++||+.+. ..+.+..+.+|. .+++|+|||++|+.+
T Consensus 199 lt~~~-~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg---------~~~~l~~~~g~~---~~~~wSPDG~~La~~ 265 (429)
T PRK01742 199 VNRSS-QPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSG---------ARKVVASFRGHN---GAPAFSPDGSRLAFA 265 (429)
T ss_pred eccCC-CccccceEcCCCCEEEEEEecCCCcEEEEEeCCCC---------ceEEEecCCCcc---CceeECCCCCEEEEE
Confidence 34555 589999999999999988653 46999999751 123344444443 468999999998876
Q ss_pred e-CCCeEEEEE--cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC-eE
Q 040062 85 S-DDQVILIHE--KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTG-IC 159 (689)
Q Consensus 85 s-~Dg~I~iwd--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~-~~ 159 (689)
+ .+|.+.||. +.++ ....+..+...+....|+|||+.|+.++ .++...||++... ..
T Consensus 266 ~~~~g~~~Iy~~d~~~~------------------~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~ 327 (429)
T PRK01742 266 SSKDGVLNIYVMGANGG------------------TPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG 327 (429)
T ss_pred EecCCcEEEEEEECCCC------------------CeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 5 678766664 4433 2344555677788999999999777655 5778888876432 22
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
...+ .+.. .+..|+|+|++|+..+.++ +.+||+.+++....... .. ...+.|+|+|++|+.+...+..
T Consensus 328 ~~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~-~~-------~~~~~~sPdG~~i~~~s~~g~~ 395 (429)
T PRK01742 328 ASLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSGSTEVLSST-FL-------DESPSISPNGIMIIYSSTQGLG 395 (429)
T ss_pred eEEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEEecCC-CC-------CCCceECCCCCEEEEEEcCCCc
Confidence 2223 3443 4578999999998888765 66699988765432221 11 2457899999999998764332
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCc
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSM 273 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~ 273 (689)
..+.+++ ........+..|.+.+...+|+|..
T Consensus 396 -~~l~~~~-~~G~~~~~l~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 396 -KVLQLVS-ADGRFKARLPGSDGQVKFPAWSPYL 427 (429)
T ss_pred -eEEEEEE-CCCCceEEccCCCCCCCCcccCCCC
Confidence 2233333 2334455566788888889998863
No 211
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.9e-12 Score=141.28 Aligned_cols=237 Identities=15% Similarity=0.132 Sum_probs=146.1
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCCccccCCCCCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD---DQVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---Dg~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
..|.+||.+. ...+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.++..
T Consensus 179 ~~l~~~d~dg------------~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~----------- 235 (429)
T PRK03629 179 YELRVSDYDG------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV----------- 235 (429)
T ss_pred eeEEEEcCCC------------CCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe-----------
Confidence 3688888764 233445557778999999999999987643 35799999987621
Q ss_pred cccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC
Q 040062 112 IENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD 188 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D 188 (689)
+.+..+ ...+..+.|+|||+.|+.. +.++ .|++||+.+++...... +...+....|+|||+.|+..+.+
T Consensus 236 ----~~l~~~---~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG~~I~f~s~~ 307 (429)
T PRK03629 236 ----RQVASF---PRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDSQNLAYTSDQ 307 (429)
T ss_pred ----EEccCC---CCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCCCEEEEEeCC
Confidence 122222 2334568999999988765 3444 59999998876654433 45567889999999988777654
Q ss_pred -CeEEEE--ECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEE
Q 040062 189 -KTVIIW--RTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPII 265 (689)
Q Consensus 189 -g~I~iw--d~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~ 265 (689)
+...|| |+.++.... +.... .......|+|||++|+.....
T Consensus 308 ~g~~~Iy~~d~~~g~~~~-lt~~~------~~~~~~~~SpDG~~Ia~~~~~----------------------------- 351 (429)
T PRK03629 308 AGRPQVYKVNINGGAPQR-ITWEG------SQNQDADVSSDGKFMVMVSSN----------------------------- 351 (429)
T ss_pred CCCceEEEEECCCCCeEE-eecCC------CCccCEEECCCCCEEEEEEcc-----------------------------
Confidence 444444 555443221 11110 012334555555555443210
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
.....|.+||+.+++.... ...+ ......|
T Consensus 352 -----------------------------------------------~g~~~I~~~dl~~g~~~~L-t~~~--~~~~p~~ 381 (429)
T PRK03629 352 -----------------------------------------------GGQQHIAKQDLATGGVQVL-TDTF--LDETPSI 381 (429)
T ss_pred -----------------------------------------------CCCceEEEEECCCCCeEEe-CCCC--CCCCceE
Confidence 0012477788877764432 2221 2346789
Q ss_pred ccCCCeEEEEeCCCc---EEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 346 SPDGYSLFACSLDGT---VANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 346 spdg~~L~sgs~DG~---I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
+|||++|+.++.++. +.+++++.+. ... ...|.+.+...+|||
T Consensus 382 SpDG~~i~~~s~~~~~~~l~~~~~~G~~-~~~-------------l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 382 APNGTMVIYSSSQGMGSVLNLVSTDGRF-KAR-------------LPATDGQVKFPAWSP 427 (429)
T ss_pred CCCCCEEEEEEcCCCceEEEEEECCCCC-eEE-------------CccCCCCcCCcccCC
Confidence 999999999988775 5666664332 221 223455678888887
No 212
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=4.2e-13 Score=147.92 Aligned_cols=252 Identities=19% Similarity=0.229 Sum_probs=173.0
Q ss_pred ceEEEEEEcC--CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-------CCcEEEEEEcCCCCEEEEE
Q 040062 14 MQIFSIDVQP--GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-------FGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 14 ~~I~si~~sp--dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~fspdg~~Lasg 84 (689)
..|+.|.+-. |..++++|+.||.||||+-.... .+..+++..+.+- .+.=.-+.|.....+|+++
T Consensus 1110 t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~------~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~t 1183 (1387)
T KOG1517|consen 1110 TRVSDLELINEQDDALLLTASSDGVIRIWKDYADK------WKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVT 1183 (1387)
T ss_pred CccceeeeecccchhheeeeccCceEEEecccccc------cCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEec
Confidence 4688888865 45789999999999999854311 1224444433321 1222446788766667777
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE-ecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC---eE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL-RGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTG---IC 159 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~---~~ 159 (689)
++-..|+|||.+.. ..+..+ .+....|++|.-+. .|+.+++|..||.|++||.+.. ..
T Consensus 1184 Gd~r~IRIWDa~~E-----------------~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~ 1246 (1387)
T KOG1517|consen 1184 GDVRSIRIWDAHKE-----------------QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL 1246 (1387)
T ss_pred CCeeEEEEEecccc-----------------eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccc
Confidence 77899999999876 233333 23445567765443 3689999999999999998753 35
Q ss_pred EEEEecCCCC--eEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLRGHSSL--VKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~~h~~~--V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
+...+.|+.. |..+.+.+.|- .|++++.||.|++||++.......+...
T Consensus 1247 v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv---------------------------- 1298 (1387)
T KOG1517|consen 1247 VCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIV---------------------------- 1298 (1387)
T ss_pred ceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceee----------------------------
Confidence 7778889987 99999998774 5999999999999999864211111100
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR 316 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg 316 (689)
.-|+ ..+..+++..++.. .++|+|+. +
T Consensus 1299 -------~~~~------------yGs~lTal~VH~ha---------------------------------piiAsGs~-q 1325 (1387)
T KOG1517|consen 1299 -------AHWE------------YGSALTALTVHEHA---------------------------------PIIASGSA-Q 1325 (1387)
T ss_pred -------eccc------------cCccceeeeeccCC---------------------------------CeeeecCc-c
Confidence 0000 01235666666554 78999988 9
Q ss_pred cEEEEeCCCCCceEEecc------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 317 TITVWTTASPRPLFVAKH------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.|+||++.... +..+.. ....++.||+|+|.--+|++|+.|.+|.||..+...
T Consensus 1326 ~ikIy~~~G~~-l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1326 LIKIYSLSGEQ-LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred eEEEEecChhh-hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 99999986433 222221 123568999999999999999999999999876543
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=4.7e-12 Score=123.36 Aligned_cols=291 Identities=16% Similarity=0.150 Sum_probs=185.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCC-
Q 040062 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLD- 146 (689)
Q Consensus 69 V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~D- 146 (689)
...++|+.|...++.+.++| .+||+.+.-... ..+.+....-.+..+-|- .++|+ +|+.+
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~---------------~~r~~~~~G~~~veMLfR--~N~laLVGGg~~ 69 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKES---------------ASRQFIDGGFKIVEMLFR--SNYLALVGGGSR 69 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhh---------------hhhccccCchhhhhHhhh--hceEEEecCCCC
Confidence 34499999999999888776 899998763211 001111111222333332 33444 33332
Q ss_pred -----CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEE
Q 040062 147 -----NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 147 -----g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
+.|.|||-....++.++. ..++|.++.+.++ .|++.- .+.|++|... +.+.++.+.....+ .+ ..+
T Consensus 70 pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NP-kG---lC~ 141 (346)
T KOG2111|consen 70 PKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNP-KG---LCS 141 (346)
T ss_pred CCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCC-Cc---eEe
Confidence 479999987788888887 7889999999864 455554 4589999987 56666665544322 11 222
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCcee--eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA--TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
++-..+-.+|+.- +.. ...+.+.+...... ......|...|.+++.+-.|
T Consensus 142 ~~~~~~k~~LafP-g~k--~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~G------------------------- 193 (346)
T KOG2111|consen 142 LCPTSNKSLLAFP-GFK--TGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQG------------------------- 193 (346)
T ss_pred ecCCCCceEEEcC-CCc--cceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCc-------------------------
Confidence 2222233333333 322 24555555444333 46778999999999998776
Q ss_pred cCccCCCCcEEEEEeCCCc-EEEEeCCCCCceEEecccC-CCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc--
Q 040062 299 GGKESQPYNVIAIGSQDRT-ITVWTTASPRPLFVAKHFF-TQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR-- 374 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~-- 374 (689)
.++|+++..|+ |||||..++..+..+..+. ...|.+++||||..+|+++|+.|+++||.+........
T Consensus 194 --------t~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~~~~~~~~ 265 (346)
T KOG2111|consen 194 --------TLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDTENTEDES 265 (346)
T ss_pred --------cEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecCCCCcccc
Confidence 89999999997 7999999999999887653 35799999999999999999999999999987554333
Q ss_pred cChHHHHHHHHhccC---------CccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 375 LSDAELDELKRSRYG---------DVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 375 l~~~~~~~~~~~~~g---------~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
.........+...+. -..+...-++|-.+-.-++..+.||+--|...
T Consensus 266 SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f 321 (346)
T KOG2111|consen 266 SSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF 321 (346)
T ss_pred ccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence 111111101111111 11234456667666555666667787755444
No 214
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.53 E-value=4.1e-13 Score=138.53 Aligned_cols=189 Identities=19% Similarity=0.348 Sum_probs=133.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceee-eeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCC
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLL-ATLRDHFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSG 100 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~v~fspdg-~~Lasgs~Dg~I~iwdl~~~~~ 100 (689)
|.+--|+.|-.-|.|.+.|.... .+ .++. ....-....|+|+.|-|.+ ..++.+-.+|.+.+||..-...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~--~~------sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~ 254 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINF--EV------SKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCG 254 (636)
T ss_pred CCCcceEEeeccCceEEecchhh--HH------HHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeecccccc
Confidence 45555667766788888886530 00 0000 0011123689999999944 4566667889999998743221
Q ss_pred ccc-----cCCCCCCCcccc------eEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 101 TTE-----FGSGEPPDIENW------KVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 101 ~~~-----~~~~~~~~~~~~------~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
... +...+.-.+..| ..+..+.-....|...+|+|||++||+.+.||.++|||..+.+++..++.--+.
T Consensus 255 ~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG 334 (636)
T KOG2394|consen 255 ATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG 334 (636)
T ss_pred CCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc
Confidence 111 000000001111 112222233457899999999999999999999999999999999888888899
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
..|++|+|||+||++|++|.-|.||.+...+.+..-++|.. +|..++|.|
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkS------WVs~VaFDp 384 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKS------WVSVVAFDP 384 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccccc------ceeeEeecc
Confidence 99999999999999999999999999999998888877754 499999987
No 215
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=8.6e-13 Score=123.59 Aligned_cols=225 Identities=15% Similarity=0.137 Sum_probs=158.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg 147 (689)
.|.+-+|+|.+++|+.|..+|.|.++.+.+....... .+.-..+...++|+.+|..++|. ..+|++|+ ||
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~-------~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG 81 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAE-------PPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DG 81 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccC-------CCCCcceeeccccCCCeeeeeee--hhheeecc-Cc
Confidence 4666789999999999999999999998764221111 11114555668999999999998 45677776 59
Q ss_pred eEEEEEcCCCeEE------EEEe--cC-----CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 148 TIHIWNMSTGICT------AVLR--GH-----SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 148 ~I~vwd~~~~~~~------~~l~--~h-----~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
.|+-|..+....- .... -| --.|++|..+|..+-+++++.|+.++-||+++++..+++
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~--------- 152 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREY--------- 152 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEE---------
Confidence 9999987654321 1111 12 246889999998888888889999999999887665544
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.||...+.++.-....
T Consensus 153 -------------------------------------------rGHtDYvH~vv~R~~~--------------------- 168 (325)
T KOG0649|consen 153 -------------------------------------------RGHTDYVHSVVGRNAN--------------------- 168 (325)
T ss_pred -------------------------------------------cCCcceeeeeeecccC---------------------
Confidence 4566777776652221
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccC---------CCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFF---------TQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h---------~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
..+++|++||++++||+++++.+..+.... ...|.+++. +..+|++|+ .-.+.+|+
T Consensus 169 ------------~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwh 233 (325)
T KOG0649|consen 169 ------------GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWH 233 (325)
T ss_pred ------------cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEe
Confidence 478999999999999999999887765421 234556654 445776665 66899999
Q ss_pred eeccccccccChHHHHHHHHhccCCccCceeeeecCchh
Q 040062 366 FEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ 404 (689)
Q Consensus 366 ~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg 404 (689)
+...+....++ -..++..+.|-.|.
T Consensus 234 Lrsse~t~vfp--------------ipa~v~~v~F~~d~ 258 (325)
T KOG0649|consen 234 LRSSESTCVFP--------------IPARVHLVDFVDDC 258 (325)
T ss_pred ccCCCceEEEe--------------cccceeEeeeecce
Confidence 99877655443 22356777776554
No 216
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.52 E-value=1.5e-13 Score=141.81 Aligned_cols=147 Identities=22% Similarity=0.380 Sum_probs=114.1
Q ss_pred ceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCC------C-----------cccceeeeeecCCCCcEEEEEEc
Q 040062 14 MQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFEN------D-----------ESTQRLLATLRDHFGSVNCVRWA 75 (689)
Q Consensus 14 ~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~------~-----------~~~~~~~~~l~~h~~~V~~v~fs 75 (689)
..|+|+.|-|.+ ..++++-.+|.+++||.......... + ......+..+.--.+.|+..+|+
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS 299 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFS 299 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEc
Confidence 479999999955 45566677899999987532111000 0 00112233333345689999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 76 pdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
|||++||+.+.||.++|||..+. +.+..++.--+...|++|||||+|+++|+.|.-|.||.+.
T Consensus 300 ~DG~~LA~VSqDGfLRvF~fdt~-----------------eLlg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 300 PDGKYLATVSQDGFLRIFDFDTQ-----------------ELLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFE 362 (636)
T ss_pred CCCceEEEEecCceEEEeeccHH-----------------HHHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEec
Confidence 99999999999999999999876 3333344445679999999999999999999999999999
Q ss_pred CCeEEEEEecCCCCeEEEEEcc
Q 040062 156 TGICTAVLRGHSSLVKGVAWDP 177 (689)
Q Consensus 156 ~~~~~~~l~~h~~~V~~l~~sp 177 (689)
..+.+..-.+|.+.|..++|+|
T Consensus 363 erRVVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERRVVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cceEEEeccccccceeeEeecc
Confidence 9999999999999999999983
No 217
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.3e-12 Score=139.40 Aligned_cols=218 Identities=12% Similarity=0.124 Sum_probs=145.5
Q ss_pred ceEEEEEEcCCCCEEEEEe---CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-eCCC-
Q 040062 14 MQIFSIDVQPGALRFATGG---GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-SDDQ- 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs---~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~Dg- 88 (689)
..+.+..|||||++|+..+ .+..|++|++... ..+.+..+.+| +..++|+|||++|+.. +.+|
T Consensus 199 ~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G---------~~~~l~~~~~~---~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 199 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------AVRQVASFPRH---NGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred CceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---------CeEEccCCCCC---cCCeEECCCCCEEEEEEcCCCC
Confidence 4799999999999998764 2457999998751 12333334333 4568999999988865 4444
Q ss_pred -eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEEe
Q 040062 89 -VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-N--TIHIWNMSTGICTAVLR 164 (689)
Q Consensus 89 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g--~I~vwd~~~~~~~~~l~ 164 (689)
.|.+||++++. ...+..+...+....|+|||+.|+..+.+ + .|+++|+.+++.. .+.
T Consensus 267 ~~I~~~d~~tg~------------------~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt 327 (429)
T PRK03629 267 LNLYVMDLASGQ------------------IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT 327 (429)
T ss_pred cEEEEEECCCCC------------------EEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee
Confidence 58889987752 22333344567889999999988877754 3 4555577666543 333
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDD---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
.+........|+|||++|+..+.+ ..|.+||+.++.... +..... .....|+|||++|+.....+. ..
T Consensus 328 ~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~~~-------~~~p~~SpDG~~i~~~s~~~~-~~ 398 (429)
T PRK03629 328 WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDTFL-------DETPSIAPNGTMVIYSSSQGM-GS 398 (429)
T ss_pred cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCCCC-------CCCceECCCCCEEEEEEcCCC-ce
Confidence 344556678999999998876643 358889998776443 222111 235789999999998876543 33
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
.+.+++.. ......+.+|.+.+...+|+|.
T Consensus 399 ~l~~~~~~-G~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 399 VLNLVSTD-GRFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred EEEEEECC-CCCeEECccCCCCcCCcccCCC
Confidence 44555542 2223445667788888888874
No 218
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.2e-12 Score=140.10 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=94.6
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
..|.+||... ...+.+..|...+.+.+|+|||++|+..+.+ ..|.+|++.++.
T Consensus 184 ~~l~i~D~~g------------~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~------------ 239 (433)
T PRK04922 184 YALQVADSDG------------YNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ------------ 239 (433)
T ss_pred EEEEEECCCC------------CCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC------------
Confidence 4688888763 3344566677889999999999999988743 469999998762
Q ss_pred cccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-
Q 040062 112 IENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD- 187 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~- 187 (689)
. ..+..+.....++.|+|||+.|+ +.+.++ .|++||+.+++.. .+..+.......+|+|||++|+..+.
T Consensus 240 -----~-~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~spDG~~l~f~sd~ 312 (433)
T PRK04922 240 -----R-ELVASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT-RLTNHFGIDTEPTWAPDGKSIYFTSDR 312 (433)
T ss_pred -----E-EEeccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE-ECccCCCCccceEECCCCCEEEEEECC
Confidence 1 22223344456789999999775 445555 6999999887754 34445555667899999998887764
Q ss_pred CCe--EEEEECCCCc
Q 040062 188 DKT--VIIWRTSDWS 200 (689)
Q Consensus 188 Dg~--I~iwd~~~~~ 200 (689)
++. |.++|+.+++
T Consensus 313 ~g~~~iy~~dl~~g~ 327 (433)
T PRK04922 313 GGRPQIYRVAASGGS 327 (433)
T ss_pred CCCceEEEEECCCCC
Confidence 444 5555665543
No 219
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=4.3e-13 Score=136.99 Aligned_cols=300 Identities=19% Similarity=0.188 Sum_probs=210.6
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
..+...|..|.|+|+.|.|+..|..|++|++|..|.+||...+..... -..+|...|....|-|
T Consensus 132 ~~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~----------------f~SGH~~NvfQaKFiP 195 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS----------------FESGHCNNVFQAKFIP 195 (559)
T ss_pred hhhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc----------------cccccccchhhhhccC
Confidence 455677889999999999999999999999999999999988753333 3346888887777877
Q ss_pred C--CCEEEEEeCCCeEEEEEcCC-CeE--EEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 136 D--DSILASGSLDNTIHIWNMST-GIC--TAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 136 d--g~~Lasgs~Dg~I~vwd~~~-~~~--~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
. .+.+++++.||.|++=.+.. +.+ ...+..|.++|.-++..|+. .-|.+++.|+.+.-+|++.......+....
T Consensus 196 ~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~ 275 (559)
T KOG1334|consen 196 FSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCRE 275 (559)
T ss_pred CCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeec
Confidence 4 45899999999999887653 222 34556799999999999976 568899999999999999877666555333
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee------eeec------CCCCCEEEEEEcCCccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT------FDFL------GHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~------~~l~------~h~~~v~~v~fsp~~~~~~ 277 (689)
...........++..|...+..+.++. ....++++....... -.+. ...-.|++++|+.++
T Consensus 276 ~~~~~~v~L~~Ia~~P~nt~~faVgG~---dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~---- 348 (559)
T KOG1334|consen 276 ADEKERVGLYTIAVDPRNTNEFAVGGS---DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDG---- 348 (559)
T ss_pred cCCccceeeeeEecCCCCccccccCCh---hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCc----
Confidence 332223457788888988755554432 223334443322211 1111 123357777887664
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC------------ceEEecccCCC--CeEEE
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR------------PLFVAKHFFTQ--SVVDL 343 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~------------~~~~~~~~h~~--~V~~l 343 (689)
.-|++.-.|-.|+++.-..+. .+.....+|.. .|..+
T Consensus 349 -----------------------------sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgV 399 (559)
T KOG1334|consen 349 -----------------------------SELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGV 399 (559)
T ss_pred -----------------------------cceeeeecccceEEeccccccCCCCCCCcchhhccchhhccccccccccee
Confidence 345555567778888433221 11121234543 45555
Q ss_pred E-EccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 344 S-WSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 344 ~-~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
- |-|...|+++||.-|.|.||+-.+++++. ...+++. -|+||.=+|--.+||+.+-|..| |++.
T Consensus 400 NFfGPrsEyVvSGSDCGhIFiW~K~t~eii~------------~MegDr~-VVNCLEpHP~~PvLAsSGid~DV--KIWT 464 (559)
T KOG1334|consen 400 NFFGPRSEYVVSGSDCGHIFIWDKKTGEIIR------------FMEGDRH-VVNCLEPHPHLPVLASSGIDHDV--KIWT 464 (559)
T ss_pred eeccCccceEEecCccceEEEEecchhHHHH------------Hhhcccc-eEeccCCCCCCchhhccCCccce--eeec
Confidence 4 46888999999999999999998887754 3344444 68999999999999999999999 7774
No 220
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.51 E-value=5.9e-12 Score=130.50 Aligned_cols=321 Identities=13% Similarity=0.190 Sum_probs=209.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC---------
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD--------- 86 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~--------- 86 (689)
=+-+.|||-|.||+|--..| |.+|-=++ ...++.+. |. .|.-+.|||+.+||++-+.
T Consensus 213 etyv~wSP~GTYL~t~Hk~G-I~lWGG~~-----------f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d 278 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHKQG-IALWGGES-----------FDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDD 278 (698)
T ss_pred eeeEEecCCceEEEEEeccc-eeeecCcc-----------HHHHHhcc-CC-CceeeecCCccceEEEecCCccccCccc
Confidence 36689999999999988755 89997665 45555554 65 4889999999999998653
Q ss_pred --CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 87 --DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 87 --Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
...++|||+.+|.....|. .++.....-.-..||.|++|+|.-.. ..|.||+..+..++-.-.
T Consensus 279 ~e~~~l~IWDI~tG~lkrsF~--------------~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks 343 (698)
T KOG2314|consen 279 NEGQQLIIWDIATGLLKRSFP--------------VIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS 343 (698)
T ss_pred CCCceEEEEEccccchhccee--------------ccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc
Confidence 2579999999995443332 11222222345689999999988776 679999987755544333
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC---
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF--- 236 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~--- 236 (689)
-.-+.|....|+|.++.||--... ..+.+-.+.+++.++........ -..+.|-.+|.+|+.--..
T Consensus 344 lki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVs------DckLhWQk~gdyLcvkvdR~tK 417 (698)
T KOG2314|consen 344 LKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVS------DCKLHWQKSGDYLCVKVDRHTK 417 (698)
T ss_pred cCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeee------ccEEEeccCCcEEEEEEEeecc
Confidence 344678899999998888754321 24666666666666554433221 2457888999999875321
Q ss_pred ---CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 237 ---QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 237 ---~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
.+....+.++.............-...|...+|-|.|. ++.+..+
T Consensus 418 ~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gd--------------------------------kF~vi~g 465 (698)
T KOG2314|consen 418 SKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGD--------------------------------KFAVISG 465 (698)
T ss_pred ccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCC--------------------------------eEEEEEc
Confidence 11222333333333333333334456777788888762 2222222
Q ss_pred C--CCcEEEEeCCC-CCceEEecccCCCCeEEEEEccCCCeEEEE---eCCCcEEEEEeeccccccccChHHHHHHHHhc
Q 040062 314 Q--DRTITVWTTAS-PRPLFVAKHFFTQSVVDLSWSPDGYSLFAC---SLDGTVANFHFEVKELGHRLSDAELDELKRSR 387 (689)
Q Consensus 314 ~--Dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sg---s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~ 387 (689)
. ..++.+|-+++ ......+........+.+.|+|.|++++.+ |..|.+.++|..-..+.. ..
T Consensus 466 ~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~------------~~ 533 (698)
T KOG2314|consen 466 NTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKD------------TA 533 (698)
T ss_pred cccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhh------------cc
Confidence 2 36789998873 322222222234567899999999998885 457899999987422221 11
Q ss_pred cCCccCceeeeecCchhhhhHhhccccce
Q 040062 388 YGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 388 ~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.-.|. ..+.+-|.|.|+|+.+++.-+..
T Consensus 534 ~~eh~-~at~veWDPtGRYvvT~ss~wrh 561 (698)
T KOG2314|consen 534 SPEHF-AATEVEWDPTGRYVVTSSSSWRH 561 (698)
T ss_pred Ccccc-ccccceECCCCCEEEEeeehhhh
Confidence 12233 36889999999999999887765
No 221
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.50 E-value=3.3e-12 Score=124.42 Aligned_cols=246 Identities=20% Similarity=0.281 Sum_probs=175.7
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
--..+|+|.+|++|+..+|.+.....|.||..... ..|+..+++..|...|+.++|+|..+.|++|
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~--------------~~w~~~htls~Hd~~vtgvdWap~snrIvtc 73 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGA--------------DLWEPAHTLSEHDKIVTGVDWAPKSNRIVTC 73 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCC--------------CCceeceehhhhCcceeEEeecCCCCceeEc
Confidence 34578999999999999999999999999998765 3478999999999999999999999999999
Q ss_pred eCCCeEEEEEcCC-C--eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 144 SLDNTIHIWNMST-G--ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 144 s~Dg~I~vwd~~~-~--~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
+.|..-++|.... + ++...+..++...+++.|+|.++.|++|+.-+.|.||-++...- .-+..+..+ .-...|.+
T Consensus 74 s~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd-WWVsKhikk-PirStv~s 151 (361)
T KOG1523|consen 74 SHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND-WWVSKHIKK-PIRSTVTS 151 (361)
T ss_pred cCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc-eehhhhhCC-ccccceee
Confidence 9999999999843 2 34445556899999999999999999999999999997754221 111111111 11234899
Q ss_pred EEEcCCCCeEEEecCCCCCc-cccceeecC------Cceee-------eeecCCCCCEEEEEEcCCcccccccccccccc
Q 040062 221 LGWSPCGHFITTTHGFQKPR-HSAPVLERG------EWAAT-------FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~-~~~~i~~~~------~~~~~-------~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~ 286 (689)
+.|.|++-.+++++.+.... ...++-+.. .|... .++....+.+..+.|+|.+
T Consensus 152 ldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG------------- 218 (361)
T KOG1523|consen 152 LDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSG------------- 218 (361)
T ss_pred eeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCC-------------
Confidence 99999999999987654432 122222111 11111 1122345667777777766
Q ss_pred ccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc-eEEecccCCCCeEEEEEccCCCeEEEEeCCCc
Q 040062 287 APVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP-LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT 360 (689)
Q Consensus 287 ~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~ 360 (689)
+.|+-.+.|..+.+-|.....+ +...... ..+..++.|-.+.. ++.++.|..
T Consensus 219 --------------------~~lawv~Hds~v~~~da~~p~~~v~~~~~~-~lP~ls~~~ise~~-vv~ag~~c~ 271 (361)
T KOG1523|consen 219 --------------------NRLAWVGHDSTVSFVDAAGPSERVQSVATA-QLPLLSVSWISENS-VVAAGYDCG 271 (361)
T ss_pred --------------------CEeeEecCCCceEEeecCCCchhccchhhc-cCCceeeEeecCCc-eeecCCCCC
Confidence 8999999999999999877753 3333332 36677888866543 444444533
No 222
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=135.88 Aligned_cols=236 Identities=17% Similarity=0.159 Sum_probs=151.8
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcCCCCCccccCCCCCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD---DQVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---Dg~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
..|.+||... .....+..|...+.+.+|+|||+.|+..+. +..|.+||+.++.
T Consensus 182 ~~l~~~d~dg------------~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~------------ 237 (435)
T PRK05137 182 KRLAIMDQDG------------ANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ------------ 237 (435)
T ss_pred eEEEEECCCC------------CCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc------------
Confidence 3677888753 445566678889999999999999988764 4689999998762
Q ss_pred cccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-
Q 040062 112 IENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD- 187 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~- 187 (689)
...+..+...+...+|+|||+.|+ +.+.++ .|++||+.+++.. .+..+........|+|||++|+..+.
T Consensus 238 ------~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~ 310 (435)
T PRK05137 238 ------RELVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDR 310 (435)
T ss_pred ------EEEeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECC
Confidence 223444566778899999999765 455555 4888899877654 45546666778999999998887764
Q ss_pred CC--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEE
Q 040062 188 DK--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPII 265 (689)
Q Consensus 188 Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~ 265 (689)
++ .|++||+.++........ ...+....|+|||++|+....... ...+.+++....... .+ .....+.
T Consensus 311 ~g~~~Iy~~d~~g~~~~~lt~~-------~~~~~~~~~SpdG~~ia~~~~~~~-~~~i~~~d~~~~~~~-~l-t~~~~~~ 380 (435)
T PRK05137 311 SGSPQLYVMNADGSNPRRISFG-------GGRYSTPVWSPRGDLIAFTKQGGG-QFSIGVMKPDGSGER-IL-TSGFLVE 380 (435)
T ss_pred CCCCeEEEEECCCCCeEEeecC-------CCcccCeEECCCCCEEEEEEcCCC-ceEEEEEECCCCceE-ec-cCCCCCC
Confidence 33 688888876554332221 112456789999999988764322 234445553222111 11 1122344
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC------CcEEEEeCCCCCceEEecccCCCC
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD------RTITVWTTASPRPLFVAKHFFTQS 339 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D------g~I~iwd~~~~~~~~~~~~~h~~~ 339 (689)
...|+|++ +.|+..+.+ ..|+++|+..+.. ..+.. ...
T Consensus 381 ~p~~spDG---------------------------------~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~--~~~ 424 (435)
T PRK05137 381 GPTWAPNG---------------------------------RVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPT--PGD 424 (435)
T ss_pred CCeECCCC---------------------------------CEEEEEEccCCCCCcceEEEEECCCCce-EEccC--CCC
Confidence 55666664 666554432 2578888866544 33332 334
Q ss_pred eEEEEEcc
Q 040062 340 VVDLSWSP 347 (689)
Q Consensus 340 V~~l~~sp 347 (689)
+...+|+|
T Consensus 425 ~~~p~Wsp 432 (435)
T PRK05137 425 ASDPAWSP 432 (435)
T ss_pred ccCcccCC
Confidence 67778876
No 223
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=3.6e-12 Score=132.53 Aligned_cols=286 Identities=14% Similarity=0.172 Sum_probs=204.3
Q ss_pred eeecCceEEEEEEcCCCCEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC--CcEEEEEEcCCCCEEEEEe
Q 040062 9 VRHEGMQIFSIDVQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF--GSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~v~fspdg~~Lasgs 85 (689)
+.|. ..-+.|..+|||+|+ |||.+--.|++||+..... .|..|. ..|.-.-++.|-..++.-.
T Consensus 48 fe~p-~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL-------------KFERhlDae~V~feiLsDD~SK~v~L~ 113 (703)
T KOG2321|consen 48 FEMP-TASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL-------------KFERHLDAEVVDFEILSDDYSKSVFLQ 113 (703)
T ss_pred cCCc-cccceeEecCCCcEEEEecccCCceEEEEccccee-------------eeeecccccceeEEEeccchhhheEee
Confidence 4555 478899999999875 6777888999999986221 222232 3344444555555555556
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|..|.+...-. ....++ -...-.+|+++.-..-|++++....|+-++++.|..+..+..
T Consensus 114 ~DR~IefHak~G-------------------~hy~~R-IP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~ 173 (703)
T KOG2321|consen 114 NDRTIEFHAKYG-------------------RHYRTR-IPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET 173 (703)
T ss_pred cCceeeehhhcC-------------------eeeeee-cCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc
Confidence 677776643221 111111 122345677766566677777778899999999999999998
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
..+.++++..++-..+|++|+.||.|.+||.++......+..... +.-.|
T Consensus 174 ~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~----------v~s~p-------------------- 223 (703)
T KOG2321|consen 174 DSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASS----------VNSHP-------------------- 223 (703)
T ss_pred ccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccc----------cCCCc--------------------
Confidence 889999999999999999999999999999988776665543211 00000
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
.......|+++.|+.++ -.+++|..+|.+.|||++.
T Consensus 224 -----------g~~~~~svTal~F~d~g---------------------------------L~~aVGts~G~v~iyDLRa 259 (703)
T KOG2321|consen 224 -----------GGDAAPSVTALKFRDDG---------------------------------LHVAVGTSTGSVLIYDLRA 259 (703)
T ss_pred -----------cccccCcceEEEecCCc---------------------------------eeEEeeccCCcEEEEEccc
Confidence 01123458889998776 6899999999999999999
Q ss_pred CCceEEecccCCCCeEEEEEccCC--CeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDG--YSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg--~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
.+++..-.+...-+|..+.|-+.+ ..|++. ....++|||-.+++....+. ....+..+|+-|+
T Consensus 260 ~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiE--------------pt~~lND~C~~p~ 324 (703)
T KOG2321|consen 260 SKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIE--------------PTSDLNDFCFVPG 324 (703)
T ss_pred CCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeecc--------------ccCCcCceeeecC
Confidence 999998776667789999997753 344443 35678999999888754432 2335899999999
Q ss_pred hhhhHhhcccccee
Q 040062 404 QLLLEAASAKETTT 417 (689)
Q Consensus 404 g~~Las~s~DG~v~ 417 (689)
+-++.+|-.++.+.
T Consensus 325 sGm~f~Ane~~~m~ 338 (703)
T KOG2321|consen 325 SGMFFTANESSKMH 338 (703)
T ss_pred CceEEEecCCCcce
Confidence 99999998888873
No 224
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.49 E-value=2e-12 Score=144.97 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=187.6
Q ss_pred cceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 55 TQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
.+..+.++..|...|..++.++ ++.+|++|+.||+|++|++..-... ....+...++......+.++.+
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~----------~~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE----------GGSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC----------cceeeeeEEEeccCCceEEEEe
Confidence 3789999999999999999987 4599999999999999999764321 1222445555556788999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC--e-----EEEEEecCC-C-CeEEEEEcc-CCC-EEEEEeCCCeEEEEECCCCcce
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTG--I-----CTAVLRGHS-S-LVKGVAWDP-IGS-FIASQSDDKTVIIWRTSDWSLA 202 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~--~-----~~~~l~~h~-~-~V~~l~~sp-dg~-~las~s~Dg~I~iwd~~~~~~~ 202 (689)
.+.+..+|+++.||.|++.++... + +......+. + .|..-+|.. +.. .|+.+...+.|..||++.....
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 999999999999999999998752 1 111122222 2 233334433 233 6777888889999999765444
Q ss_pred eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 203 HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
..++.. ...+.|++++.+|.+
T Consensus 1187 w~lk~~--------------------------------------------------~~hG~vTSi~idp~~--------- 1207 (1431)
T KOG1240|consen 1187 WRLKNQ--------------------------------------------------LRHGLVTSIVIDPWC--------- 1207 (1431)
T ss_pred HhhhcC--------------------------------------------------ccccceeEEEecCCc---------
Confidence 433321 235678888888876
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC---CeEEE-Ee-C
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG---YSLFA-CS-L 357 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~L~s-gs-~ 357 (689)
+++++|...|.+.+||++-+.++......+..+|..++.+|-. .+.++ ++ .
T Consensus 1208 ------------------------~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~ 1263 (1431)
T KOG1240|consen 1208 ------------------------NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSS 1263 (1431)
T ss_pred ------------------------eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccC
Confidence 7999999999999999999999998888888899999888743 34444 44 5
Q ss_pred CCcEEEEEeeccccccccChH-HHHHHHHhccC-----CccCceeeeecCchhhhhHhhccccce
Q 040062 358 DGTVANFHFEVKELGHRLSDA-ELDELKRSRYG-----DVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 358 DG~I~vwd~~~~~l~~~l~~~-~~~~~~~~~~g-----~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.+.|.+|+++++.....++.. +...+....-. .+.-.....++...+.++.+|+.|..|
T Consensus 1264 ~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kI 1328 (1431)
T KOG1240|consen 1264 NNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKI 1328 (1431)
T ss_pred CCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccce
Confidence 788999999998655555443 11111100000 112223444555556778888888888
No 225
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.49 E-value=1e-13 Score=140.69 Aligned_cols=272 Identities=18% Similarity=0.269 Sum_probs=213.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
-+.++|+.+|.+|+.|+..|.|-.+|..+ .++.+.+. -...|.++.|-.+.++||.+ ....+.|||-
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t-----------~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~ 198 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVT-----------KKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDN 198 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeeccc-----------ceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecC
Confidence 57899999999999999999999999987 66666665 45679999999988888876 4578999986
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
.. ..++.++.| ..|..|.|-|..-+|++++..|.++.-|+.+|+.+..+....+.+..|+-
T Consensus 199 ~G------------------tElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 199 NG------------------TELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred CC------------------cEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 54 456666655 46899999999889999999999999999999999999988899999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeee
Q 040062 176 DPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATF 255 (689)
Q Consensus 176 spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~ 255 (689)
+|-+..+-+|...|+|.+|.-...+.+..
T Consensus 260 NP~NaVih~GhsnGtVSlWSP~skePLvK--------------------------------------------------- 288 (545)
T KOG1272|consen 260 NPYNAVIHLGHSNGTVSLWSPNSKEPLVK--------------------------------------------------- 288 (545)
T ss_pred CCccceEEEcCCCceEEecCCCCcchHHH---------------------------------------------------
Confidence 99999999999999999998765444332
Q ss_pred eecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc
Q 040062 256 DFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF 335 (689)
Q Consensus 256 ~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~ 335 (689)
+..|.++|.++++.+.| .|+++.+.|..++|||++.-..+..+...
T Consensus 289 -iLcH~g~V~siAv~~~G---------------------------------~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp 334 (545)
T KOG1272|consen 289 -ILCHRGPVSSIAVDRGG---------------------------------RYMATTGLDRKVKIWDLRNFYQLHTYRTP 334 (545)
T ss_pred -HHhcCCCcceEEECCCC---------------------------------cEEeecccccceeEeeeccccccceeecC
Confidence 34588999999999887 89999999999999999998877766653
Q ss_pred CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 336 FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 336 h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
-....+++|..| |++++....|.||.=..+.-. ....++..++.+. .|..+.|.|-...|-.|..-|-
T Consensus 335 --~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~-----~~~~pYm~H~~~~---~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 335 --HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSG-----HGETPYMNHRCGG---PVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred --CCcccccccccc--ceeeecCCeeeeehhhhcCCC-----CCCcchhhhccCc---ccccceeccHHHeeeccccCCc
Confidence 346678888755 555666678999963211100 1111223344432 6899999998888877765554
Q ss_pred e
Q 040062 416 T 416 (689)
Q Consensus 416 v 416 (689)
-
T Consensus 403 t 403 (545)
T KOG1272|consen 403 T 403 (545)
T ss_pred e
Confidence 3
No 226
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.7e-12 Score=140.19 Aligned_cols=224 Identities=15% Similarity=0.100 Sum_probs=142.7
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGD---HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SG 84 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~D---g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sg 84 (689)
..|. ..+.+.+|+|||++|+..+.+ ..|++||+.. ++. ..+....+.+.+.+|+|||+.|+ +.
T Consensus 192 ~~~~-~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~-----------g~~-~~l~~~~g~~~~~~~SPDG~~la~~~ 258 (427)
T PRK02889 192 LSSP-EPIISPAWSPDGTKLAYVSFESKKPVVYVHDLAT-----------GRR-RVVANFKGSNSAPAWSPDGRTLAVAL 258 (427)
T ss_pred ccCC-CCcccceEcCCCCEEEEEEccCCCcEEEEEECCC-----------CCE-EEeecCCCCccceEECCCCCEEEEEE
Confidence 3455 589999999999999887642 4599999976 222 22333445667899999999887 46
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEE--cCCCeEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIHIWN--MSTGICTA 161 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd--~~~~~~~~ 161 (689)
+.++...||.++... .....+..+........|+|||+.|+..+. ++...||. +.++....
T Consensus 259 ~~~g~~~Iy~~d~~~----------------~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 259 SRDGNSQIYTVNADG----------------SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred ccCCCceEEEEECCC----------------CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 778887777664321 122334445555677889999998876654 45555654 44444322
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDK---TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
+..+........|+|+|++|+..+.++ .|.+||+.+++........ ......|+|||++|+.......
T Consensus 323 -lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--------~~~~p~~spdg~~l~~~~~~~g 393 (427)
T PRK02889 323 -VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--------RDESPSFAPNGRYILYATQQGG 393 (427)
T ss_pred -EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--------CccCceECCCCCEEEEEEecCC
Confidence 222333344678999999998777554 6999999887654332211 1346789999999998876543
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
. ..+.+.+.. ......+..+.+.+...+|+|.
T Consensus 394 ~-~~l~~~~~~-g~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 394 R-SVLAAVSSD-GRIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred C-EEEEEEECC-CCceEEeecCCCCCCCCccCCC
Confidence 2 233333332 2222233345556666666654
No 227
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.47 E-value=1.7e-11 Score=126.22 Aligned_cols=339 Identities=14% Similarity=0.155 Sum_probs=221.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC-----
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ----- 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg----- 88 (689)
.++..+.|||.|.+|+..... .|.+|.-.. ...+..+. | ..|..+.|+|+++||.+=+...
T Consensus 33 ~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~-----------~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe 98 (561)
T COG5354 33 WPVAYVSESPLGTYLFSEHAA-GVECWGGPS-----------KAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPE 98 (561)
T ss_pred cchhheeecCcchheehhhcc-ceEEccccc-----------hhheeeee-c-CCceecccCcccceeeeeccCCccChh
Confidence 588999999999999987764 599999876 33444444 3 3589999999999999866533
Q ss_pred ----------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC--EE-EEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 89 ----------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD--VV-DLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 89 ----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~-~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
.+.+||..++ ..+..+...... .+ -+.|+.+.+++|-. ....++|+++.
T Consensus 99 ~e~sp~~~~n~~~vwd~~sg-----------------~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t 160 (561)
T COG5354 99 IEISPFTSKNNVFVWDIASG-----------------MIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEIT 160 (561)
T ss_pred hccCCccccCceeEEeccCc-----------------eeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecC
Confidence 4899999988 455555554444 44 78899888877765 45679999972
Q ss_pred CCeEEEEEec-CCCCeEEEEEccCCC--EEEE-----EeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 156 TGICTAVLRG-HSSLVKGVAWDPIGS--FIAS-----QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 156 ~~~~~~~l~~-h~~~V~~l~~spdg~--~las-----~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
..-....+.. ....|....|+|.++ .|+. ...++.++||.+.....+.....-... -..+.|.+.|
T Consensus 161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~------~~qLkW~~~g 234 (561)
T COG5354 161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVS------GVQLKWQVLG 234 (561)
T ss_pred CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeec------ccEEEEecCC
Confidence 2211111111 135678888998643 3443 456789999999765555443322111 2468899999
Q ss_pred CeEEEecCCCC-------CccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc--------cccccccccc
Q 040062 228 HFITTTHGFQK-------PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ--------EVKAAPVGWT 292 (689)
Q Consensus 228 ~~l~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~--------~~~~~~~~~~ 292 (689)
++|++-..... ....++++........... +-.++|..++|.|.+.++.....- ..........
T Consensus 235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~ 313 (561)
T COG5354 235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYF 313 (561)
T ss_pred ceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccceEEec
Confidence 98876422111 1133445544444433333 557899999999887655444311 1122222223
Q ss_pred CCcccccCccCCCCcEEEEEeCC---CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe------CCCcEEE
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQD---RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS------LDGTVAN 363 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs------~DG~I~v 363 (689)
+........+++..++++.++.| |.+.+||....-.+..... ....+-+.|+||++++.+.. .|..|.|
T Consensus 314 Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~--~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l 391 (561)
T COG5354 314 PEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFN--GLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKL 391 (561)
T ss_pred CCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEee--cCCceEeeccCCceEEEecCCCcccccCcceEE
Confidence 33344455668889999998877 6799999876554442222 33456678999999988864 3889999
Q ss_pred EEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcccc
Q 040062 364 FHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKE 414 (689)
Q Consensus 364 wd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG 414 (689)
||+...+.. ..+.+.|.|.|++..+.|.+.
T Consensus 392 ~~v~g~~~f---------------------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 392 WDVYGAKVF---------------------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred EEecCchhh---------------------hhhhccccCCcccceeeccCC
Confidence 998654321 367778888887777666555
No 228
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=1e-11 Score=135.73 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=84.1
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
.....+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.++. . ..+......+...+|
T Consensus 186 ~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~-----------------~-~~l~~~~g~~~~~~~ 247 (427)
T PRK02889 186 QNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR-----------------R-RVVANFKGSNSAPAW 247 (427)
T ss_pred CCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC-----------------E-EEeecCCCCccceEE
Confidence 4444555677889999999999999887753 359999998762 2 223333445678999
Q ss_pred cCCCCEEE-EEeCCCeEEEE--EcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-CCeEEEEEC
Q 040062 134 SPDDSILA-SGSLDNTIHIW--NMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRT 196 (689)
Q Consensus 134 spdg~~La-sgs~Dg~I~vw--d~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~ 196 (689)
+|||+.|+ +.+.++...|| |+..+. ...+..+........|+|||++|+..+. ++...||.+
T Consensus 248 SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~ 313 (427)
T PRK02889 248 SPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRM 313 (427)
T ss_pred CCCCCEEEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEE
Confidence 99999776 45677765555 454444 4445545556677899999998876654 456666654
No 229
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.47 E-value=6e-12 Score=121.47 Aligned_cols=156 Identities=18% Similarity=0.338 Sum_probs=114.0
Q ss_pred EEEEEcCCCCEEEEEeC----------CCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEE-
Q 040062 17 FSIDVQPGALRFATGGG----------DHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASG- 84 (689)
Q Consensus 17 ~si~~spdg~~Latgs~----------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasg- 84 (689)
..|.|+++|++|++-.. -+...||.+... ......+. ...+.|.+++|+|+|+.||..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~----------~~~~~~i~l~~~~~I~~~~WsP~g~~favi~ 78 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEK----------NIPVESIELKKEGPIHDVAWSPNGNEFAVIY 78 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecC----------CCccceeeccCCCceEEEEECcCCCEEEEEE
Confidence 57889999988765433 134556655331 12233332 234579999999999987654
Q ss_pred -eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCeEE
Q 040062 85 -SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD---NTIHIWNMSTGICT 160 (689)
Q Consensus 85 -s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D---g~I~vwd~~~~~~~ 160 (689)
..++.|.+||++. +.+..+. ...+..+.|+|+|++|++++.+ |.|.+||+++.+.+
T Consensus 79 g~~~~~v~lyd~~~------------------~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i 138 (194)
T PF08662_consen 79 GSMPAKVTLYDVKG------------------KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI 138 (194)
T ss_pred ccCCcccEEEcCcc------------------cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe
Confidence 4567999999963 4555553 4667899999999999998754 56999999998888
Q ss_pred EEEecCCCCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCcceeec
Q 040062 161 AVLRGHSSLVKGVAWDPIGSFIASQSD------DKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~~las~s~------Dg~I~iwd~~~~~~~~~~ 205 (689)
.... |. .+..++|+|+|++|+++.. |..++||+.. |+++...
T Consensus 139 ~~~~-~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 139 STFE-HS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred eccc-cC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeEec
Confidence 8776 43 4689999999999999864 6789999984 5554443
No 230
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=6.9e-12 Score=137.43 Aligned_cols=221 Identities=14% Similarity=0.135 Sum_probs=141.9
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SG 84 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sg 84 (689)
..|. ..+.+..|+|||++|+..+. +..|++||+.. ++ ...+..+.+...+++|+|||+.|+ +.
T Consensus 200 t~~~-~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~-----------g~-~~~l~~~~g~~~~~~~SpDG~~l~~~~ 266 (433)
T PRK04922 200 LRSA-EPILSPAWSPDGKKLAYVSFERGRSAIYVQDLAT-----------GQ-RELVASFRGINGAPSFSPDGRRLALTL 266 (433)
T ss_pred ecCC-CccccccCCCCCCEEEEEecCCCCcEEEEEECCC-----------CC-EEEeccCCCCccCceECCCCCEEEEEE
Confidence 3444 57999999999999998874 34699999975 22 223333445556889999999776 44
Q ss_pred eCCC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCeE
Q 040062 85 SDDQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DN--TIHIWNMSTGIC 159 (689)
Q Consensus 85 s~Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg--~I~vwd~~~~~~ 159 (689)
+.++ .|.+||+.++. ...+..+.......+|+||++.|+.++. ++ .|+++|+.+++.
T Consensus 267 s~~g~~~Iy~~d~~~g~------------------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~ 328 (433)
T PRK04922 267 SRDGNPEIYVMDLGSRQ------------------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA 328 (433)
T ss_pred eCCCCceEEEEECCCCC------------------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence 5555 58899987752 2334445555677899999998887764 44 477778777654
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDK---TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
... ..+......++|+|+|++|+..+.++ .|.+||+.+++........ ......|+|||++++.....
T Consensus 329 ~~l-t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~~~--------~~~~p~~spdG~~i~~~s~~ 399 (433)
T PRK04922 329 ERL-TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTPGS--------LDESPSFAPNGSMVLYATRE 399 (433)
T ss_pred EEe-ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCCCC--------CCCCceECCCCCEEEEEEec
Confidence 332 22334455789999999998765433 6999999877654322211 12356899999998877654
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNH 271 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp 271 (689)
.. ...+.+++.... ....+..+.+.+...+|+|
T Consensus 400 ~g-~~~L~~~~~~g~-~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 400 GG-RGVLAAVSTDGR-VRQRLVSADGEVREPAWSP 432 (433)
T ss_pred CC-ceEEEEEECCCC-ceEEcccCCCCCCCCccCC
Confidence 32 233444444221 2223333445555555654
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=1.5e-11 Score=134.97 Aligned_cols=188 Identities=14% Similarity=0.176 Sum_probs=132.0
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SG 84 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sg 84 (689)
..|. ..|.+..|+|||++|+..+. +..|++||+.+ ++ ...+..+.+.+.+.+|+|||+.|+ +.
T Consensus 198 t~~~-~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~-----------g~-~~~l~~~~g~~~~~~~SPDG~~la~~~ 264 (435)
T PRK05137 198 TDGS-SLVLTPRFSPNRQEITYMSYANGRPRVYLLDLET-----------GQ-RELVGNFPGMTFAPRFSPDGRKVVMSL 264 (435)
T ss_pred ecCC-CCeEeeEECCCCCEEEEEEecCCCCEEEEEECCC-----------Cc-EEEeecCCCcccCcEECCCCCEEEEEE
Confidence 3444 58999999999999988763 46899999975 22 234555667788999999999876 45
Q ss_pred eCCCe--EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCeE
Q 040062 85 SDDQV--ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DN--TIHIWNMSTGIC 159 (689)
Q Consensus 85 s~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg--~I~vwd~~~~~~ 159 (689)
+.++. |.+||+.++ ....+..+........|+||++.|+..+. ++ .|++||+..++.
T Consensus 265 ~~~g~~~Iy~~d~~~~------------------~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~ 326 (435)
T PRK05137 265 SQGGNTDIYTMDLRSG------------------TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP 326 (435)
T ss_pred ecCCCceEEEEECCCC------------------ceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe
Confidence 55555 666777665 22344556666778999999998887764 33 688889876654
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDD---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
.. +..+...+....|+|+|++|+..+.+ ..|.+||+.++.. ..+.... .+....|+|||+.|+.....
T Consensus 327 ~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~~-------~~~~p~~spDG~~i~~~~~~ 397 (435)
T PRK05137 327 RR-ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSGF-------LVEGPTWAPNGRVIMFFRQT 397 (435)
T ss_pred EE-eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCCC-------CCCCCeECCCCCEEEEEEcc
Confidence 43 33345556778999999999877643 3688888865433 2222211 14568999999999876553
No 232
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.43 E-value=1.2e-09 Score=115.87 Aligned_cols=286 Identities=14% Similarity=0.182 Sum_probs=175.2
Q ss_pred EEEEeCC----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCC
Q 040062 28 FATGGGD----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD----DQVILIHEKKPGS 99 (689)
Q Consensus 28 Latgs~D----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----Dg~I~iwdl~~~~ 99 (689)
+++|+.. +.|++|+++... .....+..+. .......++++|++++|.+... ++.|..|++....
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~-------g~l~~~~~~~-~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~ 73 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEET-------GTLTLVQTVA-EGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT 73 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTT-------TEEEEEEEEE-ESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT
T ss_pred EEEEcCCCCCCCcEEEEEEcCCC-------CCceEeeeec-CCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc
Confidence 4566665 789999984311 1123333322 3345677899999999998876 5789999988642
Q ss_pred CccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CeEEEE---Ee----------
Q 040062 100 GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMST-GICTAV---LR---------- 164 (689)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~-~~~~~~---l~---------- 164 (689)
. ....+............+++++++++|+++. .+|.|.++++.. +..... +.
T Consensus 74 g-------------~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~r 140 (345)
T PF10282_consen 74 G-------------TLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDR 140 (345)
T ss_dssp T-------------EEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTT
T ss_pred c-------------eeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccc
Confidence 1 1134444443455677899999999888887 588999999987 433332 21
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCc--ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRTSDWS--LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
.......++.|+|+++++++... ...|.+|++.... +...... ........+.+.|+|+++++++.+.......
T Consensus 141 q~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~---~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~ 217 (345)
T PF10282_consen 141 QEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSI---KVPPGSGPRHLAFSPDGKYAYVVNELSNTVS 217 (345)
T ss_dssp TSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEE---ECSTTSSEEEEEE-TTSSEEEEEETTTTEEE
T ss_pred cccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecc---ccccCCCCcEEEEcCCcCEEEEecCCCCcEE
Confidence 12356789999999998888752 3489999997655 3221111 1112233789999999999999876544333
Q ss_pred cccee-ecCCceeeeeecC----C--CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-
Q 040062 242 SAPVL-ERGEWAATFDFLG----H--NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS- 313 (689)
Q Consensus 242 ~~~i~-~~~~~~~~~~l~~----h--~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs- 313 (689)
.+.+- ..+.+........ . ......+.++|++ ++|+++.
T Consensus 218 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg---------------------------------~~lyvsnr 264 (345)
T PF10282_consen 218 VFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDG---------------------------------RFLYVSNR 264 (345)
T ss_dssp EEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTS---------------------------------SEEEEEEC
T ss_pred EEeecccCCceeEEEEeeeccccccccCCceeEEEecCC---------------------------------CEEEEEec
Confidence 33222 1112222111110 0 1134556666554 6666655
Q ss_pred CCCcEEEEeCCC--CCceE--EecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEee--cccc
Q 040062 314 QDRTITVWTTAS--PRPLF--VAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFE--VKEL 371 (689)
Q Consensus 314 ~Dg~I~iwd~~~--~~~~~--~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~--~~~l 371 (689)
.++.|.+|++.. ++... .+.. ......++.++|+|++|+++. .++.|.+|+++ ++.+
T Consensus 265 ~~~sI~vf~~d~~~g~l~~~~~~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l 328 (345)
T PF10282_consen 265 GSNSISVFDLDPATGTLTLVQTVPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKL 328 (345)
T ss_dssp TTTEEEEEEECTTTTTEEEEEEEEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEE
T ss_pred cCCEEEEEEEecCCCceEEEEEEeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcE
Confidence 567899999942 33222 2221 244589999999999999877 56789999885 4444
No 233
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.42 E-value=1.2e-11 Score=122.31 Aligned_cols=178 Identities=21% Similarity=0.302 Sum_probs=127.7
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCC-EEEEEe
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDS-ILASGS 144 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~-~Lasgs 144 (689)
..+..++|++.-..+|++..|-.|++|+-... ....++ .....|+|++|-|.+. .|+.|+
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst------------------~pt~Lks~sQrnvtclawRPlsaselavgC 160 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSST------------------CPTKLKSVSQRNVTCLAWRPLSASELAVGC 160 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCC------------------CCceecchhhcceeEEEeccCCcceeeeee
Confidence 45788999998778999999999999987653 111222 2346799999999754 677766
Q ss_pred CCCeEEEEEcCCC----eE----------EEEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCcc
Q 040062 145 LDNTIHIWNMSTG----IC----------TAVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 145 ~Dg~I~vwd~~~~----~~----------~~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
. +-|.+|..... .. +....+| .+|++|.|.+||..+++++ .|..|.|||.+++..+......
T Consensus 161 r-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g- 237 (445)
T KOG2139|consen 161 R-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG- 237 (445)
T ss_pred c-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC-
Confidence 5 56999976431 11 1122344 6899999999999999988 5678999999998876655222
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee-ecCCceeeeeecCCCCCEEEEEEcCCccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL-ERGEWAATFDFLGHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~h~~~v~~v~fsp~~~~ 275 (689)
...+.-+.|||||.+|+++.- +....+| +...|....-.. ..+.|....|+|.|..
T Consensus 238 -----lgg~slLkwSPdgd~lfaAt~----davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 238 -----LGGFSLLKWSPDGDVLFAATC----DAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSF 294 (445)
T ss_pred -----CCceeeEEEcCCCCEEEEecc----cceeeeehhcccceecceec-cCCceeeeeecCCCCE
Confidence 223788999999999998854 4556678 455555443333 3459999999999843
No 234
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.41 E-value=1.1e-09 Score=116.21 Aligned_cols=275 Identities=15% Similarity=0.155 Sum_probs=169.4
Q ss_pred eEEEEEEcCCCCEEEEEeC----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-CCe
Q 040062 15 QIFSIDVQPGALRFATGGG----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-DQV 89 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-Dg~ 89 (689)
.-..++++|++++|.+... ++.|..|++... ....+.+.+..........++++|++++|+++.. +|.
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~-------~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPD-------TGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETT-------TTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCC-------cceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence 4567889999999998876 579999998751 0123444444434455678999999999998875 899
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEe----------cCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCe
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR----------GHTADVVDLNWSPDDSILASGSL-DNTIHIWNMSTGI 158 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~----------~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~~~~ 158 (689)
|.++++....... .....+. .......++.|+||+++|++... ...|.+|++....
T Consensus 111 v~v~~l~~~g~l~-------------~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~ 177 (345)
T PF10282_consen 111 VSVFPLDDDGSLG-------------EVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDT 177 (345)
T ss_dssp EEEEEECTTSEEE-------------EEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS
T ss_pred EEEEEccCCcccc-------------eeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCC
Confidence 9999998742111 1111111 12355889999999998887753 3489999997654
Q ss_pred --EE--EEEe-cCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECC--CCcc--eeeccCcccccCCcccEEEEEEcCCCC
Q 040062 159 --CT--AVLR-GHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTS--DWSL--AHRTDGHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 159 --~~--~~l~-~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~--~~~~--~~~~~~~~~~~~~~~~i~~l~~spdg~ 228 (689)
.. ..+. ......+.+.|+|+++++++.. .+++|.+|++. ++.. +..+...............+.++|||+
T Consensus 178 ~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~ 257 (345)
T PF10282_consen 178 GKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGR 257 (345)
T ss_dssp -TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSS
T ss_pred ceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCC
Confidence 32 2222 3446678999999999886665 57789999987 3322 222222111122233578899999999
Q ss_pred eEEEecCCCCCccccceeec----CCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 229 FITTTHGFQKPRHSAPVLER----GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~----~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
+|++++.... .+.+++. +.......+......-..+.++|++
T Consensus 258 ~lyvsnr~~~---sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g------------------------------- 303 (345)
T PF10282_consen 258 FLYVSNRGSN---SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG------------------------------- 303 (345)
T ss_dssp EEEEEECTTT---EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS-------------------------------
T ss_pred EEEEEeccCC---EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC-------------------------------
Confidence 9999876533 3333333 2222222222223335666666665
Q ss_pred CCcEEEEEe-CCCcEEEEeC--CCCCceEEecccCCCCeEEEEE
Q 040062 305 PYNVIAIGS-QDRTITVWTT--ASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 305 ~~~~lasgs-~Dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
++|+++. .++.|.+|++ +++..........-....|+.|
T Consensus 304 --~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f 345 (345)
T PF10282_consen 304 --RYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF 345 (345)
T ss_dssp --SEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred --CEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence 7777776 4578999976 4555444332222445667765
No 235
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.41 E-value=2.5e-13 Score=137.90 Aligned_cols=216 Identities=15% Similarity=0.238 Sum_probs=169.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|..+.|-.+.++||++-. ..++|||-. +..++.+..| ..|..+.|-|.--+|++++..|.++.-
T Consensus 171 Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~ 236 (545)
T KOG1272|consen 171 ETVRDVTFLHNEQFFAVAQK-KYVYVYDNN------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQ 236 (545)
T ss_pred hhhhhhhhhcchHHHHhhhh-ceEEEecCC------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEE
Confidence 46888889889999998765 789999976 5788888866 468999999998899999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
|+..| +.+..+....+.+..++-+|-+..+-.|...|+|.+|.....+.+..+-.|.++|.+|
T Consensus 237 DVS~G-----------------klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~si 299 (545)
T KOG1272|consen 237 DVSTG-----------------KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSI 299 (545)
T ss_pred eechh-----------------hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceE
Confidence 99998 5566666677888889999999999999999999999999999999999999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec---CC
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER---GE 250 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~---~~ 250 (689)
+++++|.|++|++.|..++|||+++...+.++..+.. ...+++|..|...+..+ ..+.+|.. ..
T Consensus 300 Av~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~-------a~~ls~SqkglLA~~~G------~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 300 AVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHP-------ASNLSLSQKGLLALSYG------DHVQIWKDALKGS 366 (545)
T ss_pred EECCCCcEEeecccccceeEeeeccccccceeecCCC-------ccccccccccceeeecC------CeeeeehhhhcCC
Confidence 9999999999999999999999999887776655333 45677877776555432 22334421 11
Q ss_pred ceeeeeecCC--CCCEEEEEEcCCc
Q 040062 251 WAATFDFLGH--NAPIIVVKFNHSM 273 (689)
Q Consensus 251 ~~~~~~l~~h--~~~v~~v~fsp~~ 273 (689)
......+..| .++|..+.|.|..
T Consensus 367 ~~~~~pYm~H~~~~~V~~l~FcP~E 391 (545)
T KOG1272|consen 367 GHGETPYMNHRCGGPVEDLRFCPYE 391 (545)
T ss_pred CCCCcchhhhccCcccccceeccHH
Confidence 1112222223 3477777787764
No 236
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=5.4e-11 Score=116.90 Aligned_cols=223 Identities=15% Similarity=0.237 Sum_probs=145.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC------------CcEEEEEEcCCCC--
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF------------GSVNCVRWAKHGR-- 79 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~v~fspdg~-- 79 (689)
+-|.++.|..+|.+||||..+|.|.+|.-+..... .......++.|. ..|+.++|.+++.
T Consensus 26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred cceeeEEeecccceEeecCCCCeEEEeeccccccc------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 46899999999999999999999999986653221 122333443343 4589999998654
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccc-c--CC-CCCCCcc--------------cceEEEE-EecCCCCEEEEEEcCCCCEE
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTE-F--GS-GEPPDIE--------------NWKVAMT-LRGHTADVVDLNWSPDDSIL 140 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~-~--~~-~~~~~~~--------------~~~~~~~-l~~h~~~V~~l~~spdg~~L 140 (689)
.++..+.|++|++|.+........ + .. ..+..+. ...+.+. -..|+..|.+|.++.|...+
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~ 179 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF 179 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence 667778899999999876432210 0 00 0000000 0111122 23688899999999999988
Q ss_pred EEEeCCCeEEEEEcCCCe---EEEEEecCC-----CCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCccee----eccC
Q 040062 141 ASGSLDNTIHIWNMSTGI---CTAVLRGHS-----SLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAH----RTDG 207 (689)
Q Consensus 141 asgs~Dg~I~vwd~~~~~---~~~~l~~h~-----~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~----~~~~ 207 (689)
+++. |=.|.+|+++--. -+..++.+. .-|++..|+|. .+.|+-.+..|+|++-|++...+-. .+..
T Consensus 180 lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEe 258 (433)
T KOG1354|consen 180 LSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEE 258 (433)
T ss_pred eecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhcc
Confidence 8875 6789999986321 122334333 46888899995 4788888899999999998533211 1111
Q ss_pred cccccC------CcccEEEEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 208 HWAKSL------GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 208 ~~~~~~------~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
+..... -...|..+.|+++|+++++-. ...+.+|+.
T Consensus 259 pedp~~rsffseiIsSISDvKFs~sGryilsRD-----yltvk~wD~ 300 (433)
T KOG1354|consen 259 PEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-----YLTVKLWDL 300 (433)
T ss_pred ccCCcchhhHHHHhhhhhceEEccCCcEEEEec-----cceeEEEec
Confidence 111111 123478899999999999853 356677775
No 237
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.38 E-value=1.7e-10 Score=126.18 Aligned_cols=134 Identities=19% Similarity=0.210 Sum_probs=91.8
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
..|.++|... .....+..+...+...+|+|||++|+.++.+ ..|++||+.++.
T Consensus 170 ~~l~~~d~~g------------~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~------------ 225 (417)
T TIGR02800 170 YELQVADYDG------------ANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ------------ 225 (417)
T ss_pred ceEEEEcCCC------------CCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC------------
Confidence 3577777653 3344555677789999999999999987654 479999998762
Q ss_pred cccceEEEEEecCCCCEEEEEEcCCCCEEEE-EeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC
Q 040062 112 IENWKVAMTLRGHTADVVDLNWSPDDSILAS-GSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD 188 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~~spdg~~Las-gs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D 188 (689)
. ..+..+...+.+++|+||++.|+. .+.++ .|++||+.++.... +..+........|+|+|++|+..+..
T Consensus 226 -----~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~ 298 (417)
T TIGR02800 226 -----R-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDR 298 (417)
T ss_pred -----E-EEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECC
Confidence 1 223334556677899999997764 44444 69999998775443 33355555677899999988766543
Q ss_pred -C--eEEEEECCCC
Q 040062 189 -K--TVIIWRTSDW 199 (689)
Q Consensus 189 -g--~I~iwd~~~~ 199 (689)
+ .|.+||+.++
T Consensus 299 ~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 299 GGSPQIYMMDADGG 312 (417)
T ss_pred CCCceEEEEECCCC
Confidence 3 4666676544
No 238
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.38 E-value=4.4e-11 Score=119.60 Aligned_cols=275 Identities=14% Similarity=0.129 Sum_probs=188.4
Q ss_pred CCCcEEEEEEcCCCC--EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 65 HFGSVNCVRWAKHGR--YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 65 h~~~V~~v~fspdg~--~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
....|..++|.-+++ .|..++.|..+..+.+......... ............|..+... +..|++
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~-----------~~~~~~~l~~~~I~gl~~~--dg~Lit 120 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSL-----------DDAKTVSLGTKSIKGLKLA--DGTLIT 120 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCcccccc-----------ccccccccccccccchhhc--CCEEEE
Confidence 445678888876543 5666656777777776654211110 1233344456677777765 346778
Q ss_pred EeCCCeEEEEEcCCC----eEEEEEecCCCCeEEEEEccCCC-EEEEEeCC--CeEEEEECCCCcceeeccCcccccC--
Q 040062 143 GSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAWDPIGS-FIASQSDD--KTVIIWRTSDWSLAHRTDGHWAKSL-- 213 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~spdg~-~las~s~D--g~I~iwd~~~~~~~~~~~~~~~~~~-- 213 (689)
|-.+|.+.+|....+ ..+..+..+ ..+..|.-++... ++++|+.. ..+.|||+.+.+.+..-........
T Consensus 121 c~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L 199 (412)
T KOG3881|consen 121 CVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL 199 (412)
T ss_pred EecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccc
Confidence 888999999998743 233344433 4455666666544 55668887 7899999998866655443322222
Q ss_pred -CcccEEEEEEcCC--CCeEEEecCCCCCccccceeecCCce-eeeeecCCCCCEEEEEEcCCccccccccccccccccc
Q 040062 214 -GSTFFRRLGWSPC--GHFITTTHGFQKPRHSAPVLERGEWA-ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 214 -~~~~i~~l~~spd--g~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
-..+++.+.|.+. ...++++.. .+.+++|+..... ....+.-...++.++...|.+
T Consensus 200 rVPvW~tdi~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g---------------- 259 (412)
T KOG3881|consen 200 RVPVWITDIRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG---------------- 259 (412)
T ss_pred eeeeeeccceecCCCCCceEEEEec----ceeEEEecCcccCcceeEeccccCcceeeeecCCC----------------
Confidence 2456788899888 788888765 4667777765332 223333345566666666655
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
++|++|..-+.+..||++.++.+.....+..++|+++..+|.+++|++|+.|..+||+|+++.
T Consensus 260 -----------------n~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 260 -----------------NFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred -----------------cEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 899999999999999999999988866677899999999999999999999999999999997
Q ss_pred ccccccChHHHHHHHHhccCCccCceeeeecCchh
Q 040062 370 ELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ 404 (689)
Q Consensus 370 ~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg 404 (689)
++++... - ..+++.+.+.++-
T Consensus 323 kll~kvY------------v--Ks~lt~il~~~~~ 343 (412)
T KOG3881|consen 323 KLLHKVY------------V--KSRLTFILLRDDV 343 (412)
T ss_pred hhhhhhh------------h--hccccEEEecCCc
Confidence 7765332 1 1246777776543
No 239
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.36 E-value=5.6e-11 Score=114.72 Aligned_cols=152 Identities=16% Similarity=0.310 Sum_probs=100.9
Q ss_pred EEEEEEcCCCCEEEEEeC----------CCeEEEEEcCC-CeEEEEEec-CCCCeEEEEEccCCCEEEEE--eCCCeEEE
Q 040062 128 VVDLNWSPDDSILASGSL----------DNTIHIWNMST-GICTAVLRG-HSSLVKGVAWDPIGSFIASQ--SDDKTVII 193 (689)
Q Consensus 128 V~~l~~spdg~~Lasgs~----------Dg~I~vwd~~~-~~~~~~l~~-h~~~V~~l~~spdg~~las~--s~Dg~I~i 193 (689)
=..+.|+++|.+|+.-.. -+...+|.++. ......+.- ..+.|.+++|+|+|+.|++. ..+..|.+
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 346789999987765433 12345555422 233333332 34579999999999987654 35678999
Q ss_pred EECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCc
Q 040062 194 WRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSM 273 (689)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~ 273 (689)
||++ .+.+..+. ...+..+.|+|++
T Consensus 88 yd~~-~~~i~~~~------------------------------------------------------~~~~n~i~wsP~G 112 (194)
T PF08662_consen 88 YDVK-GKKIFSFG------------------------------------------------------TQPRNTISWSPDG 112 (194)
T ss_pred EcCc-ccEeEeec------------------------------------------------------CCCceEEEECCCC
Confidence 9995 33332221 2233445566554
Q ss_pred cccccccccccccccccccCCcccccCccCCCCcEEEEEeC---CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC
Q 040062 274 FRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ---DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~---Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
++|++++. .|.|.+||+++.+.+.... ...++.++|+|||+
T Consensus 113 ---------------------------------~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsPdGr 156 (194)
T PF08662_consen 113 ---------------------------------RFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSPDGR 156 (194)
T ss_pred ---------------------------------CEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcCCCC
Confidence 55555553 3679999999877776544 33589999999999
Q ss_pred eEEEEeC------CCcEEEEEeeccc
Q 040062 351 SLFACSL------DGTVANFHFEVKE 370 (689)
Q Consensus 351 ~L~sgs~------DG~I~vwd~~~~~ 370 (689)
+|++++. |+.++||++....
T Consensus 157 ~~~ta~t~~r~~~dng~~Iw~~~G~~ 182 (194)
T PF08662_consen 157 YLATATTSPRLRVDNGFKIWSFQGRL 182 (194)
T ss_pred EEEEEEeccceeccccEEEEEecCeE
Confidence 9999764 8899999997443
No 240
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.36 E-value=4.6e-11 Score=116.55 Aligned_cols=238 Identities=16% Similarity=0.090 Sum_probs=149.0
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEE-EeCC------CeEEEEECCCCc
Q 040062 128 VVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIAS-QSDD------KTVIIWRTSDWS 200 (689)
Q Consensus 128 V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las-~s~D------g~I~iwd~~~~~ 200 (689)
...++|+.|...++++..+| .+||+.+-.+.......+.+.+.-+...--.++|+. |+.+ ..|.|||=....
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k~~ 86 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLKER 86 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEecccCc
Confidence 44599999999888887555 899998764443332222222222222223455544 3333 479999955555
Q ss_pred ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC-CceeeeeecCCCCCEEEEEEcCCccccccc
Q 040062 201 LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG-EWAATFDFLGHNAPIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~ 279 (689)
++.++.... .|..+.++++--.++. ...+.+|... ..+....+.....|--.++..|..
T Consensus 87 ~i~el~f~~-------~I~~V~l~r~riVvvl-------~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~------ 146 (346)
T KOG2111|consen 87 CIIELSFNS-------EIKAVKLRRDRIVVVL-------ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS------ 146 (346)
T ss_pred EEEEEEecc-------ceeeEEEcCCeEEEEe-------cCeEEEEEcCCChhheeeeecccCCCceEeecCCC------
Confidence 555554332 2777877766444433 2344444433 222221121111111122222221
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEE-EeCCCcEEEEeCCCCCc-eEEecccCCCCeEEEEEccCCCeEEEEeC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI-GSQDRTITVWTTASPRP-LFVAKHFFTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las-gs~Dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 357 (689)
...+||. |-.-|.|+|-|+...+. .-.+...|...|.+++++-+|..||++|.
T Consensus 147 -------------------------~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaSt 201 (346)
T KOG2111|consen 147 -------------------------NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATAST 201 (346)
T ss_pred -------------------------CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEecc
Confidence 2245555 33458999999987665 12233468999999999999999999999
Q ss_pred CCc-EEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 358 DGT-VANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 358 DG~-I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.|+ |||||.++++++.. .+-|..+..|.+|+||||..+||.+|+.|++ .+.++-
T Consensus 202 kGTLIRIFdt~~g~~l~E-----------~RRG~d~A~iy~iaFSp~~s~LavsSdKgTl--HiF~l~ 256 (346)
T KOG2111|consen 202 KGTLIRIFDTEDGTLLQE-----------LRRGVDRADIYCIAFSPNSSWLAVSSDKGTL--HIFSLR 256 (346)
T ss_pred CcEEEEEEEcCCCcEeee-----------eecCCchheEEEEEeCCCccEEEEEcCCCeE--EEEEee
Confidence 998 69999999988764 3445555579999999999999999999999 666543
No 241
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.35 E-value=1.5e-10 Score=126.74 Aligned_cols=186 Identities=15% Similarity=0.154 Sum_probs=129.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-EeCCC-
Q 040062 14 MQIFSIDVQPGALRFATGGGD---HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-GSDDQ- 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~D---g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~Dg- 88 (689)
..+.+..|+|||++|+....+ ..|++||+.+ ++. ..+..+.+.+.+++|+|||+.|+. .+.++
T Consensus 190 ~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~-----------g~~-~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 190 EPILSPAWSPDGQKLAYVSFESGKPEIYVQDLAT-----------GQR-EKVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred CceecccCCCCCCEEEEEEcCCCCcEEEEEECCC-----------CCE-EEeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 478999999999999987653 4799999876 222 233345566778999999997764 44444
Q ss_pred -eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEEe
Q 040062 89 -VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-N--TIHIWNMSTGICTAVLR 164 (689)
Q Consensus 89 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g--~I~vwd~~~~~~~~~l~ 164 (689)
.|.+|++.++. ...+..+........|+||++.|+..+.. + .|+++|+.+++.. .+.
T Consensus 258 ~~i~~~d~~~~~------------------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~ 318 (417)
T TIGR02800 258 PDIYVMDLDGKQ------------------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLT 318 (417)
T ss_pred ccEEEEECCCCC------------------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee
Confidence 58888887652 22333344445567899999988776543 3 6888888776643 344
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDK---TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
.+...+..+.|+|+|++|+.++.++ .|.+||+.++.... +.... ......|+|+|++|+.....+.
T Consensus 319 ~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~-------~~~~p~~spdg~~l~~~~~~~~ 387 (417)
T TIGR02800 319 FRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTG-------LDESPSFAPNGRMILYATTRGG 387 (417)
T ss_pred cCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCC-------CCCCceECCCCCEEEEEEeCCC
Confidence 4556677889999999999888776 78999988754332 22111 1234589999999988765443
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.34 E-value=1.2e-10 Score=123.94 Aligned_cols=307 Identities=15% Similarity=0.223 Sum_probs=198.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCC----CcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFEN----DESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~----~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
...|+.|+....++|+||.||.+++-.+.+....... .......-+++.+|++.|.-+.|+.+.+.|-+...+|.|
T Consensus 16 kL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlI 95 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLI 95 (1189)
T ss_pred eEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceE
Confidence 7999999999999999999999999988764322211 223345567889999999999999999999999999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE-EEEecCCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT-AVLRGHSSL 169 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~-~~l~~h~~~ 169 (689)
.+|-+-.++ |-....-......|.+++|+.||..++....||.|.+=.+...+.. +.++ ...
T Consensus 96 iVWmlykgs---------------W~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk--g~~ 158 (1189)
T KOG2041|consen 96 IVWMLYKGS---------------WCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK--GQL 158 (1189)
T ss_pred EEEeeeccc---------------HHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc--hhe
Confidence 999987763 2111222234567999999999999999999999998877543221 1222 223
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEE-EEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFR-RLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~-~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
...+.|++|.+.++.+-.+|.+.+||... ....++...- .++ .-.|+.-+..|+... |..
T Consensus 159 l~hv~ws~D~~~~Lf~~ange~hlydnqg-nF~~Kl~~~c-------~Vn~tg~~s~~~~kia~i~-----------w~~ 219 (1189)
T KOG2041|consen 159 LAHVLWSEDLEQALFKKANGETHLYDNQG-NFERKLEKDC-------EVNGTGIFSNFPTKIAEIE-----------WNT 219 (1189)
T ss_pred ccceeecccHHHHHhhhcCCcEEEecccc-cHHHhhhhce-------EEeeeeeecCCCcccccee-----------ecc
Confidence 44789999999888888899999999743 2211111110 011 112333333333221 111
Q ss_pred CCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC---------CcEE
Q 040062 249 GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD---------RTIT 319 (689)
Q Consensus 249 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D---------g~I~ 319 (689)
+.. .......|...++|....... ........+.....+.......++++|.+|++++.+ +.|.
T Consensus 220 g~~----~~v~pdrP~lavcy~nGr~Qi---MR~eND~~Pvv~dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~ 292 (1189)
T KOG2041|consen 220 GPY----QPVPPDRPRLAVCYANGRMQI---MRSENDPEPVVVDTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVH 292 (1189)
T ss_pred Ccc----ccCCCCCCEEEEEEcCceehh---hhhcCCCCCeEEecccEeecceecCCCcEEEEccCcccccCccccceEE
Confidence 111 112234556666665443211 122333444455566666677777788999999875 2455
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+|. .-|+.+..++.. ...|+.++|-..|-.++.+- |+.|++=++.
T Consensus 293 Fys-p~G~i~gtlkvp-g~~It~lsWEg~gLriA~Av-dsfiyfanIR 337 (1189)
T KOG2041|consen 293 FYS-PYGHIVGTLKVP-GSCITGLSWEGTGLRIAIAV-DSFIYFANIR 337 (1189)
T ss_pred Eec-cchhheEEEecC-CceeeeeEEcCCceEEEEEe-cceEEEEeec
Confidence 554 345666666643 67799999988776666554 6666654443
No 243
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.31 E-value=3.1e-10 Score=126.32 Aligned_cols=150 Identities=24% Similarity=0.297 Sum_probs=126.4
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 19 IDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPG 98 (689)
Q Consensus 19 i~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~ 98 (689)
+-++++.-++++|+.-+.|.+|+... .+.-..+.+|.+.|..+.|+-||+++++.|+|.++++|++++.
T Consensus 139 ~g~s~~~~~i~~gsv~~~iivW~~~~-----------dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~ 207 (967)
T KOG0974|consen 139 IGDSAEELYIASGSVFGEIIVWKPHE-----------DNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSR 207 (967)
T ss_pred EeccCcEEEEEeccccccEEEEeccc-----------cCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccc
Confidence 34566667899999999999999873 1111268899999999999999999999999999999999987
Q ss_pred CCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-CCeEEEEEcc
Q 040062 99 SGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS-SLVKGVAWDP 177 (689)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~-~~V~~l~~sp 177 (689)
.. ......+|+..|+.++|+++ ++++++.|.+.++|+. .+..+..+.+|. ..|..++.++
T Consensus 208 ~~----------------~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~-~~~~l~~y~~h~g~~iw~~~~~~ 268 (967)
T KOG0974|consen 208 EV----------------LGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV-NGTQLEVYDEHSGKGIWKIAVPI 268 (967)
T ss_pred cc----------------cCcccccccceeEEEEeccc--eeEEeccceEEEEEec-ccceehhhhhhhhcceeEEEEcC
Confidence 42 11355689999999999987 8999999999999976 556666888886 5799999999
Q ss_pred CCCEEEEEeCCCeEEEEECCC
Q 040062 178 IGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 178 dg~~las~s~Dg~I~iwd~~~ 198 (689)
+...++|++.|+.+++||+..
T Consensus 269 ~~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 269 GVIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred CceEEEeeccCcchhhhhhhc
Confidence 999999999999999999854
No 244
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.30 E-value=2.1e-10 Score=121.80 Aligned_cols=299 Identities=11% Similarity=0.018 Sum_probs=164.9
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
++-..++.|.+.|..+. +.+..+......-..+.|++|++++++++.||.|.++|+.+.+.+.
T Consensus 10 V~~~~~~~v~viD~~t~-----------------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~ 72 (369)
T PF02239_consen 10 VVERGSGSVAVIDGATN-----------------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA 72 (369)
T ss_dssp EEEGGGTEEEEEETTT------------------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE
T ss_pred EEecCCCEEEEEECCCC-----------------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE
Confidence 45567899999999887 5777777554444557899999999999999999999999999999
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
.++... ...++++++||++++++. .++.+.++|.++.+.+..+....... .....+..+..++....++..-.+..
T Consensus 73 ~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~- 150 (369)
T PF02239_consen 73 TIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTG- 150 (369)
T ss_dssp EEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTT-
T ss_pred EEecCC-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCC-
Confidence 998544 467899999999998775 68899999999999988876443221 12334667777888875555433222
Q ss_pred ccccceeecCCc-eeeeeecCCCCCEEEEEEcCCccccccccccccccccccc---------cCCccc----ccCccCC-
Q 040062 240 RHSAPVLERGEW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW---------TNGTSK----IGGKESQ- 304 (689)
Q Consensus 240 ~~~~~i~~~~~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~---------~~~~~~----~~~~~s~- 304 (689)
.+.+.+.... .................|+|++..++.............. ..+... .....++
T Consensus 151 --~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~ 228 (369)
T PF02239_consen 151 --EIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPG 228 (369)
T ss_dssp --EEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETT
T ss_pred --eEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCC
Confidence 2222332221 1111222334455667777776433322111000000000 000000 0000011
Q ss_pred ---------CCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE----eCCCcEEEEEeecccc
Q 040062 305 ---------PYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC----SLDGTVANFHFEVKEL 371 (689)
Q Consensus 305 ---------~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg----s~DG~I~vwd~~~~~l 371 (689)
.+...++.-....+.+||....+.+..+... ... .-+..+|++++|++. ...++|.++|.++.+.
T Consensus 229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~-G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~ 306 (369)
T PF02239_consen 229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQ-GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV 306 (369)
T ss_dssp TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-S-SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred cceEEeeccccceecccccCCccccchhhcCeEEEEEECC-CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcce
Confidence 1111212222234557888888888877753 344 778889999999998 4568999999998766
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
...+... ...++..+.|++||..+..+..++.
T Consensus 307 ~~~i~~~------------~~~~~~h~ef~~dG~~v~vS~~~~~ 338 (369)
T PF02239_consen 307 VKTITPG------------PGKRVVHMEFNPDGKEVWVSVWDGN 338 (369)
T ss_dssp EE-HHHH------------HT--EEEEEE-TTSSEEEEEEE--T
T ss_pred eEEEecc------------CCCcEeccEECCCCCEEEEEEecCC
Confidence 5544211 0113899999999987776665544
No 245
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.30 E-value=6.7e-09 Score=107.97 Aligned_cols=268 Identities=12% Similarity=0.042 Sum_probs=158.7
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCCcccc
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD----------DQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----------Dg~I~iwdl~~~~~~~~~ 104 (689)
+.|.+.|..+ .+.+.++..-..+- .+ ++|||+.|+.+.. +..|.+||..+..
T Consensus 27 ~~v~ViD~~~-----------~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~----- 88 (352)
T TIGR02658 27 TQVYTIDGEA-----------GRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL----- 88 (352)
T ss_pred ceEEEEECCC-----------CEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc-----
Confidence 7899999987 67777776444333 24 9999998877655 7899999999984
Q ss_pred CCCCCCCcccceEEEEEecC-------CCCEEEEEEcCCCCEEEEEe-C-CCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 105 GSGEPPDIENWKVAMTLRGH-------TADVVDLNWSPDDSILASGS-L-DNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~spdg~~Lasgs-~-Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
.+..+.-- ...-..++++|||++|++.. . +..|.+.|+.+++.+..+.... ...-+..
T Consensus 89 ------------~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t 155 (352)
T TIGR02658 89 ------------PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPT 155 (352)
T ss_pred ------------EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEe
Confidence 44444321 22345789999999988776 3 6899999999999999887533 2222222
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC-CCCeEEEecCCCCCccccceeecCCce--
Q 040062 176 DPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP-CGHFITTTHGFQKPRHSAPVLERGEWA-- 252 (689)
Q Consensus 176 spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~~~~~~~~~~i~~~~~~~-- 252 (689)
+.+. ++ .-+.||......+.+......-...........-+.+-.|++ +|++++++.. ..+.+.+.....
T Consensus 156 ~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-----G~V~~id~~~~~~~ 228 (352)
T TIGR02658 156 ANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-----GKIFQIDLSSGDAK 228 (352)
T ss_pred cCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-----CeEEEEecCCCcce
Confidence 2222 22 223355544443332111111111100000000011113445 7777777654 233333311100
Q ss_pred --eeeeec--------CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe---------
Q 040062 253 --ATFDFL--------GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS--------- 313 (689)
Q Consensus 253 --~~~~l~--------~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs--------- 313 (689)
..+.+. -..+...-++++++ ++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~wrP~g~q~ia~~~d---------------------------------g~~lyV~~~~~~~~thk 275 (352)
T TIGR02658 229 FLPAIEAFTEAEKADGWRPGGWQQVAYHRA---------------------------------RDRIYLLADQRAKWTHK 275 (352)
T ss_pred ecceeeeccccccccccCCCcceeEEEcCC---------------------------------CCEEEEEecCCcccccc
Confidence 000000 01112222444444 35555432
Q ss_pred -CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC-eEEEEe-CCCcEEEEEeecccccccc
Q 040062 314 -QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACS-LDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 314 -~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~DG~I~vwd~~~~~l~~~l 375 (689)
..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .++.|.++|..+++....+
T Consensus 276 ~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 276 TASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred CCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 225799999999999988876 45799999999999 888776 5788999999998876554
No 246
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.30 E-value=5.2e-09 Score=107.04 Aligned_cols=172 Identities=13% Similarity=0.133 Sum_probs=138.5
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEcCCCCCcc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ-VILIHEKKPGSGTT 102 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg-~I~iwdl~~~~~~~ 102 (689)
+|.+++..+. |...|.+... +-.+ . -+|.+.|.-.++.-+++-++.|..|| .+-|+|.+++
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~-----------~~~i-q-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---- 392 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWD-----------GYSI-Q-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---- 392 (668)
T ss_pred CCcEEEEEec-CcEEEECCCC-----------CeeE-E-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc----
Confidence 6788888887 7788877653 2222 2 25778899999998888999999999 8999999986
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
.+..+...-+.|.++..++||++++++.....|.+.|+.++.....-+...+.|..+.|||++++|
T Consensus 393 --------------e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~i 458 (668)
T COG4946 393 --------------EVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWI 458 (668)
T ss_pred --------------eEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeE
Confidence 556666677889999999999999999999999999999998877777788999999999999999
Q ss_pred EEEeCCC----eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 183 ASQSDDK----TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 183 as~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
|-+--+| .|++||+.+++.......... =.+-+|.||+++|..-+
T Consensus 459 AYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~-------DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 459 AYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAY-------DFSPAFDPDGRYLYFLS 507 (668)
T ss_pred EEecCcceeeeeEEEEecCCCeEEEecCCccc-------ccCcccCCCCcEEEEEe
Confidence 9876554 699999988776654433211 24568999999988654
No 247
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1e-09 Score=120.36 Aligned_cols=123 Identities=18% Similarity=0.202 Sum_probs=82.8
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 60 ATLRDHFGSVNCVRWAKHGRYIASGSDD-Q--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~~Lasgs~D-g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
+.+..+...+.+.+|+|||++|+..+.+ + .|.+||+.++.. +.+..+ .......+|+||
T Consensus 211 ~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~---------------~~lt~~---~g~~~~~~wSPD 272 (448)
T PRK04792 211 QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR---------------EKVTSF---PGINGAPRFSPD 272 (448)
T ss_pred eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe---------------EEecCC---CCCcCCeeECCC
Confidence 4455567789999999999999877543 2 588888877621 122222 223346899999
Q ss_pred CCEEEE-EeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCcc
Q 040062 137 DSILAS-GSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-DK--TVIIWRTSDWSL 201 (689)
Q Consensus 137 g~~Las-gs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg--~I~iwd~~~~~~ 201 (689)
|+.|+. .+.++ .|++||+.+++... +..+.......+|+|||++|+..+. ++ .|.++|+.+++.
T Consensus 273 G~~La~~~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 273 GKKLALVLSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred CCEEEEEEeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 997765 45566 48888988776543 4445556678899999998876653 33 455666665543
No 248
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=7.9e-10 Score=121.38 Aligned_cols=222 Identities=14% Similarity=0.088 Sum_probs=137.3
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCC---CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-E
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGD---HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-G 84 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~D---g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-g 84 (689)
..|. ..+.+..|+|||++|+..+.+ ..|.+||+.+ ++ ...+....+.+...+|+|||++|+. .
T Consensus 195 ~~~~-~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~-----------g~-~~~l~~~~g~~~~~~~SpDG~~la~~~ 261 (430)
T PRK00178 195 LQSR-EPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDT-----------GR-REQITNFEGLNGAPAWSPDGSKLAFVL 261 (430)
T ss_pred ecCC-CceeeeeECCCCCEEEEEEcCCCCCEEEEEECCC-----------CC-EEEccCCCCCcCCeEECCCCCEEEEEE
Confidence 3444 588999999999999877643 4688999875 22 1223333344567899999998874 4
Q ss_pred eCCC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCeE
Q 040062 85 SDDQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DN--TIHIWNMSTGIC 159 (689)
Q Consensus 85 s~Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg--~I~vwd~~~~~~ 159 (689)
+.++ .|.+||+.++. ...+..+........|+||++.|+..+. ++ .|+++|+.+++.
T Consensus 262 ~~~g~~~Iy~~d~~~~~------------------~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~ 323 (430)
T PRK00178 262 SKDGNPEIYVMDLASRQ------------------LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA 323 (430)
T ss_pred ccCCCceEEEEECCCCC------------------eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 4455 57788887652 2233345555667899999998776653 33 688888877764
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCC-C--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDD-K--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~D-g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
..... .........|+|+|++|+..+.+ + .|.+||+.+++........ . .....|+|+|+.++.....
T Consensus 324 ~~lt~-~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~~-~-------~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 324 ERVTF-VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDTS-L-------DESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EEeec-CCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCCC-C-------CCCceECCCCCEEEEEEec
Confidence 43322 22233457899999998877643 2 5888999877643322211 1 1245899999999887654
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
... ..+.+++... .....+..+.+.+...+|+|.
T Consensus 395 ~g~-~~l~~~~~~g-~~~~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 395 QGR-GVLMLVSING-RVRLPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCc-eEEEEEECCC-CceEECcCCCCCcCCCccCCC
Confidence 322 2233333322 112223334445555556553
No 249
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=3.8e-09 Score=123.98 Aligned_cols=376 Identities=13% Similarity=0.166 Sum_probs=215.3
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEE----eCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 13 GMQIFSIDVQPGALRFATGGGDHKVRIW----NMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 13 g~~I~si~~spdg~~Latgs~Dg~V~IW----d~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
+..|.++.|-++...++.+..+|.|.+. +... ...+.+. .-...|.|++||||+..|+..+.++
T Consensus 75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~---------~~~E~VG---~vd~GI~a~~WSPD~Ella~vT~~~ 142 (928)
T PF04762_consen 75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDE---------DEIEIVG---SVDSGILAASWSPDEELLALVTGEG 142 (928)
T ss_pred CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC---------ceeEEEE---EEcCcEEEEEECCCcCEEEEEeCCC
Confidence 3589999999999999999999999999 4432 1123333 3456799999999999999999999
Q ss_pred eEEEEEcCCC----C-------------------CccccCCCCCCCcc----cce----EEEEEecCCCCEEEEEEcCCC
Q 040062 89 VILIHEKKPG----S-------------------GTTEFGSGEPPDIE----NWK----VAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 89 ~I~iwdl~~~----~-------------------~~~~~~~~~~~~~~----~~~----~~~~l~~h~~~V~~l~~spdg 137 (689)
++.+.+.+=. . .-..|......... .-. ....+. +...-..|+|-.||
T Consensus 143 ~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 143 NLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred EEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 8887653211 0 00011000000000 000 001122 44567789999999
Q ss_pred CEEEEEeC---C---CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC---CCeEEEEECCCCcceeeccCc
Q 040062 138 SILASGSL---D---NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD---DKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 138 ~~Lasgs~---D---g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~---Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
.++|+.+. . ..|+||+-+ |+....-+.-.+--.+++|-|.|++||+.-. ...|.+|.- +|-....+...
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 99998875 2 479999964 7665555544444557899999999998764 345777764 45444455444
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce--eeeeecCC-CCCEEEEEEcCCccc-cccccc-cc
Q 040062 209 WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA--ATFDFLGH-NAPIIVVKFNHSMFR-RNSASS-QE 283 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~h-~~~v~~v~fsp~~~~-~~~~~~-~~ 283 (689)
.. .....+..+.|++|+..|+....+ .+.+|..+.+. ....+.-. ...+..+.|+|..-. +..... ..
T Consensus 300 ~~--~~~~~v~~l~Wn~ds~iLAv~~~~-----~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~ 372 (928)
T PF04762_consen 300 FD--PEEEKVIELAWNSDSEILAVWLED-----RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQ 372 (928)
T ss_pred CC--CCCceeeEEEECCCCCEEEEEecC-----CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCc
Confidence 31 123348999999999999997532 27788776643 33333322 233455889886321 111111 22
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC---CceEEecccCCCCeEEEEEccCCCeEEEEeCCCc
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP---RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT 360 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~ 360 (689)
.....+.|....... ....+...+++- ....+.+-.++.. -|+....-.....|.+++|++++..+++-..||.
T Consensus 373 ~~~~~~~~~v~~s~~--~~~~D~g~vaVI-DG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~ 449 (928)
T PF04762_consen 373 YEIYDFAWDVSRSPG--SSPNDNGTVAVI-DGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGS 449 (928)
T ss_pred EEEEEEEEEEEecCC--CCccCceEEEEE-eCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCC
Confidence 222222222221110 000011122211 1223555444432 1222222223678999999999988999999999
Q ss_pred EEEEEeeccccccccChHHHHHHHH-----hccCCccCceeeeecCchhhhhHhhccc
Q 040062 361 VANFHFEVKELGHRLSDAELDELKR-----SRYGDVRGRLANLAETPAQLLLEAASAK 413 (689)
Q Consensus 361 I~vwd~~~~~l~~~l~~~~~~~~~~-----~~~g~~~~~I~~l~~Spdg~~Las~s~D 413 (689)
|.+|.+................+.. .........+..++|..+..+++....+
T Consensus 450 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (928)
T PF04762_consen 450 LSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSD 507 (928)
T ss_pred EEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecC
Confidence 9999976654321111000000000 0111123357888888777766665554
No 250
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.28 E-value=1.3e-08 Score=101.86 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=138.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+. ...+-|+|+|++++|.++.. +|.|--|.++... .....+.....-..+-+.++++++|++|+++..
T Consensus 37 ~~~-~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-------G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY 108 (346)
T COG2706 37 AEL-GNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-------GRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY 108 (346)
T ss_pred ccc-CCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-------CeEEEeeccccCCCCCeEEEECCCCCEEEEEEc
Confidence 344 37888999999999988855 4788888877411 112222222222233388999999999999876
Q ss_pred C-CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC----------EEEEEEcCCCCEEEEEeC-CCeEEEEEc
Q 040062 87 D-QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD----------VVDLNWSPDDSILASGSL-DNTIHIWNM 154 (689)
Q Consensus 87 D-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~----------V~~l~~spdg~~Lasgs~-Dg~I~vwd~ 154 (689)
. |.|.++-++...... ..+..+ .|... +....|.|++++|++... --.|.+|++
T Consensus 109 ~~g~v~v~p~~~dG~l~-------------~~v~~~-~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~ 174 (346)
T COG2706 109 HSGSVSVYPLQADGSLQ-------------PVVQVV-KHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL 174 (346)
T ss_pred cCceEEEEEcccCCccc-------------cceeee-ecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence 4 789999997642111 111211 23333 888999999999998874 237999999
Q ss_pred CCCeEEEEEe---cCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCC----cceeeccCcccccCCcccEEEEEEcCC
Q 040062 155 STGICTAVLR---GHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDW----SLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 155 ~~~~~~~~l~---~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
..+.....-. .....-+.|.|+|++++..... -+++|.+|..+.. +.++.+..-...-.+......+..++|
T Consensus 175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~d 254 (346)
T COG2706 175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPD 254 (346)
T ss_pred ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCC
Confidence 8776543221 2345668899999999877665 4889999998763 222333222222344556788999999
Q ss_pred CCeEEEecCC
Q 040062 227 GHFITTTHGF 236 (689)
Q Consensus 227 g~~l~~~~~~ 236 (689)
|++|.+++..
T Consensus 255 GrFLYasNRg 264 (346)
T COG2706 255 GRFLYASNRG 264 (346)
T ss_pred CCEEEEecCC
Confidence 9999998764
No 251
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1.8e-09 Score=118.59 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=114.5
Q ss_pred eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCCc
Q 040062 36 KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPDI 112 (689)
Q Consensus 36 ~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~~ 112 (689)
.|.++|.+. .....+..+...+...+|+|||++|+..+.+ ..|.+|++.++..
T Consensus 180 ~l~~~d~~g------------~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~------------ 235 (430)
T PRK00178 180 TLQRSDYDG------------ARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR------------ 235 (430)
T ss_pred EEEEECCCC------------CCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE------------
Confidence 466667653 3344455677789999999999999887654 3688999987631
Q ss_pred ccceEEEEEecCCCCEEEEEEcCCCCEEEE-EeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-C
Q 040062 113 ENWKVAMTLRGHTADVVDLNWSPDDSILAS-GSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-D 188 (689)
Q Consensus 113 ~~~~~~~~l~~h~~~V~~l~~spdg~~Las-gs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-D 188 (689)
..+......+....|+|||+.|+. ...++ .|++||+.+++... +..+........|+|||+.|+..+. +
T Consensus 236 ------~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~-lt~~~~~~~~~~~spDg~~i~f~s~~~ 308 (430)
T PRK00178 236 ------EQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR-VTNHPAIDTEPFWGKDGRTLYFTSDRG 308 (430)
T ss_pred ------EEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-cccCCCCcCCeEECCCCCEEEEEECCC
Confidence 122222334557899999997774 44444 68889998876543 4445556667899999998776654 3
Q ss_pred C--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 189 K--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 189 g--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
+ .|+++|+.+++........ .......|+|+|++|+....... ...+.+++..
T Consensus 309 g~~~iy~~d~~~g~~~~lt~~~-------~~~~~~~~Spdg~~i~~~~~~~~-~~~l~~~dl~ 363 (430)
T PRK00178 309 GKPQIYKVNVNGGRAERVTFVG-------NYNARPRLSADGKTLVMVHRQDG-NFHVAAQDLQ 363 (430)
T ss_pred CCceEEEEECCCCCEEEeecCC-------CCccceEECCCCCEEEEEEccCC-ceEEEEEECC
Confidence 3 5777788776643322111 11345789999999988765332 2334455543
No 252
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.26 E-value=8.5e-10 Score=121.05 Aligned_cols=217 Identities=12% Similarity=0.115 Sum_probs=132.4
Q ss_pred ceEEEEEEcCCCCEEEEEeC-C--CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-EeCCCe
Q 040062 14 MQIFSIDVQPGALRFATGGG-D--HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-GSDDQV 89 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~-D--g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~Dg~ 89 (689)
..+.+..|||||++|+..+. + ..|++||+.+. ..+.+..+. +.....+|+|||+.|+. .+.++.
T Consensus 218 ~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg---------~~~~lt~~~---g~~~~~~wSPDG~~La~~~~~~g~ 285 (448)
T PRK04792 218 EPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQ---------VREKVTSFP---GINGAPRFSPDGKKLALVLSKDGQ 285 (448)
T ss_pred CcccCceECCCCCEEEEEEecCCCcEEEEEECCCC---------CeEEecCCC---CCcCCeeECCCCCEEEEEEeCCCC
Confidence 46789999999999987654 2 35888888651 122233332 33457899999998875 455665
Q ss_pred --EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEEe
Q 040062 90 --ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DN--TIHIWNMSTGICTAVLR 164 (689)
Q Consensus 90 --I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg--~I~vwd~~~~~~~~~l~ 164 (689)
|.+||+.++ ....+..+.......+|+||++.|+..+. ++ .|+++|+.+++.....
T Consensus 286 ~~Iy~~dl~tg------------------~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt- 346 (448)
T PRK04792 286 PEIYVVDIATK------------------ALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT- 346 (448)
T ss_pred eEEEEEECCCC------------------CeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-
Confidence 667777655 22333445555678899999998876653 33 5777788777654332
Q ss_pred cCCCCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSD-DK--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
.+.......+|+|||++|+..+. ++ .|.++|+.+++... +..... .....|+|+|++|+.....+. ..
T Consensus 347 ~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~-------d~~ps~spdG~~I~~~~~~~g-~~ 417 (448)
T PRK04792 347 FEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRL-------DESPSVAPNGTMVIYSTTYQG-KQ 417 (448)
T ss_pred cCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCC-------CCCceECCCCCEEEEEEecCC-ce
Confidence 12233345789999998877654 33 45667877765433 221111 123479999999988765433 22
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcC
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNH 271 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp 271 (689)
.+.+++.. ......+..+.+.+...+|+|
T Consensus 418 ~l~~~~~~-G~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 418 VLAAVSID-GRFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred EEEEEECC-CCceEECcCCCCCcCCCccCC
Confidence 34444432 222233334445556666665
No 253
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.24 E-value=3e-10 Score=113.73 Aligned_cols=183 Identities=14% Similarity=0.224 Sum_probs=141.6
Q ss_pred cCceeeecCceEEEEEEcCCCC-EEEEEeCC--CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC--CC
Q 040062 5 KPSWVRHEGMQIFSIDVQPGAL-RFATGGGD--HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH--GR 79 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~-~Latgs~D--g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd--g~ 79 (689)
+..|+.-. ..++.|.-++... ++|+||.. ..+.|||++.....+.........+ .+. -.-.++++.|-+. ..
T Consensus 141 ~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L-~Lr-VPvW~tdi~Fl~g~~~~ 217 (412)
T KOG3881|consen 141 KLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL-GLR-VPVWITDIRFLEGSPNY 217 (412)
T ss_pred cceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccc-cce-eeeeeccceecCCCCCc
Confidence 34444433 4688888888665 45668887 7899999987321111100000000 000 1224788999987 78
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
.||+++.-+.+++||...+. +.+..+.--...++++...|+++++++|..-+.+..||++.++.
T Consensus 218 ~fat~T~~hqvR~YDt~~qR----------------RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 218 KFATITRYHQVRLYDTRHQR----------------RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred eEEEEecceeEEEecCcccC----------------cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee
Confidence 99999999999999998765 56777777788999999999999999999999999999999998
Q ss_pred EEE-EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 160 TAV-LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 160 ~~~-l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
+.. +.+-.+.|++|..+|.+.+|++++-|+.|||+|+.+.+++....
T Consensus 282 ~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY 329 (412)
T KOG3881|consen 282 LGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY 329 (412)
T ss_pred eccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence 887 88899999999999999999999999999999999977776554
No 254
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.24 E-value=1.9e-10 Score=113.27 Aligned_cols=179 Identities=17% Similarity=0.347 Sum_probs=140.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.++.++.++++..+|++|-.+|++.-+.+.. +.+....++....|...|..+-|+-...++++.+.|..+.--
T Consensus 69 ~~~~~~~y~~e~~~L~vg~~ngtvtefs~se-------dfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~h 141 (404)
T KOG1409|consen 69 SPCSAMEYVSESRRLYVGQDNGTVTEFALSE-------DFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWH 141 (404)
T ss_pred CCceEeeeeccceEEEEEEecceEEEEEhhh-------hhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEE
Confidence 5799999999999999999999999998875 223355667777899999999999988999999999877544
Q ss_pred EcCCCCCcccc--CCC---------------CCC-------CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeE
Q 040062 94 EKKPGSGTTEF--GSG---------------EPP-------DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTI 149 (689)
Q Consensus 94 dl~~~~~~~~~--~~~---------------~~~-------~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I 149 (689)
-.+.+.....+ ... ... .......+.++.+|...+.+++|.+....|++|..|..|
T Consensus 142 c~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~v 221 (404)
T KOG1409|consen 142 CTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSV 221 (404)
T ss_pred eeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCce
Confidence 44444322111 000 000 122335677889999999999999999999999999999
Q ss_pred EEEEcCCC-eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 150 HIWNMSTG-ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 150 ~vwd~~~~-~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
.+||+.-+ .....+.+|...|..+...+.-+.+++++.||.|.+|+++..
T Consensus 222 i~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 222 IMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred EEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 99999654 345567889999999998888899999999999999998653
No 255
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=2.8e-09 Score=116.03 Aligned_cols=224 Identities=13% Similarity=0.047 Sum_probs=132.8
Q ss_pred ceEEEEEEcCCCCEEE---EEeCCC--eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-C
Q 040062 14 MQIFSIDVQPGALRFA---TGGGDH--KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-D 87 (689)
Q Consensus 14 ~~I~si~~spdg~~La---tgs~Dg--~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-D 87 (689)
..+.+-.|||||+.++ +...+| .|.+.++... ..+.+.. ..+.....+|+|||+.|+..+. +
T Consensus 185 ~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---------~~~~lt~---~~g~~~~p~wSPDG~~Laf~s~~~ 252 (428)
T PRK01029 185 SLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---------AGKKILA---LQGNQLMPTFSPRKKLLAFISDRY 252 (428)
T ss_pred CCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---------CceEeec---CCCCccceEECCCCCEEEEEECCC
Confidence 4667789999997532 343344 4666677641 1233333 3444567899999999887653 2
Q ss_pred C----eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEE--EcCC-CeE
Q 040062 88 Q----VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIW--NMST-GIC 159 (689)
Q Consensus 88 g----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vw--d~~~-~~~ 159 (689)
| .+.+|++..+... ........+.......+|+|||+.|+..+ .++...+| ++.. +..
T Consensus 253 g~~di~~~~~~~~~g~~g--------------~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~ 318 (428)
T PRK01029 253 GNPDLFIQSFSLETGAIG--------------KPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQS 318 (428)
T ss_pred CCcceeEEEeecccCCCC--------------cceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccc
Confidence 2 3444666543100 11222222233456789999999877765 45644444 5432 233
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDD---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
...+..+...+....|+|||++|+..+.+ ..|.+||+.+++........ ..+....|+|||+.|+.....
T Consensus 319 ~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~-------~~~~~p~wSpDG~~L~f~~~~ 391 (428)
T PRK01029 319 PRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSP-------ENKESPSWAIDSLHLVYSAGN 391 (428)
T ss_pred eEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCC-------CCccceEECCCCCEEEEEECC
Confidence 44455455667789999999988876543 46999999887765433221 124568999999998876543
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
.. ...+.+++....... .+....+.+...+|+|.
T Consensus 392 ~g-~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 392 SN-ESELYLISLITKKTR-KIVIGSGEKRFPSWGAF 425 (428)
T ss_pred CC-CceEEEEECCCCCEE-EeecCCCcccCceecCC
Confidence 32 244555555433322 22223445566677665
No 256
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.21 E-value=8.5e-08 Score=96.12 Aligned_cols=284 Identities=12% Similarity=0.153 Sum_probs=172.8
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCC
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPP 110 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~ 110 (689)
+.-|++|++.+... ...+..+-.+.+..+-|+|+|++++|.++-.+ |.|.-|.++...+..
T Consensus 15 s~gI~v~~ld~~~g--------~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L-------- 78 (346)
T COG2706 15 SQGIYVFNLDTKTG--------ELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL-------- 78 (346)
T ss_pred CCceEEEEEeCccc--------ccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE--------
Confidence 46699999985211 11122233467788999999999999888654 778888887642211
Q ss_pred CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCC-CeEEE--EEecCCCC----------eEEEEEc
Q 040062 111 DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIHIWNMST-GICTA--VLRGHSSL----------VKGVAWD 176 (689)
Q Consensus 111 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~~-~~~~~--~l~~h~~~----------V~~l~~s 176 (689)
..+.........-+.+++++++++|+++.. -|.|.++-++. |.... .+..|.+. +....|.
T Consensus 79 -----t~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t 153 (346)
T COG2706 79 -----TFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT 153 (346)
T ss_pred -----EEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC
Confidence 122222222333488999999999988874 56899998865 33221 12224444 8889999
Q ss_pred cCCCEEEEEe--CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 177 PIGSFIASQS--DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 177 pdg~~las~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
|++++|++.+ .| .|.+|++..+.+.........+ ....+.+.|+|++++....+..+.. +.+|+-......
T Consensus 154 P~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~---G~GPRHi~FHpn~k~aY~v~EL~st---V~v~~y~~~~g~ 226 (346)
T COG2706 154 PDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKP---GAGPRHIVFHPNGKYAYLVNELNST---VDVLEYNPAVGK 226 (346)
T ss_pred CCCCEEEEeecCCc-eEEEEEcccCccccccccccCC---CCCcceEEEcCCCcEEEEEeccCCE---EEEEEEcCCCce
Confidence 9999999876 45 7999999977766554443322 2336899999999999998764432 223322211000
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-CCcEEEEeCCCCCc-eE--
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTASPRP-LF-- 330 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~~~~-~~-- 330 (689)
+ ..+..+..-|.. +...........+++|++|.++.. ...|.+|.+....- +.
T Consensus 227 ~------~~lQ~i~tlP~d-----------------F~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~ 283 (346)
T COG2706 227 F------EELQTIDTLPED-----------------FTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELV 283 (346)
T ss_pred E------EEeeeeccCccc-----------------cCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEE
Confidence 0 011111111111 111111111223556688887764 34688887754321 22
Q ss_pred EecccCCCCeEEEEEccCCCeEEEEeCCC-cEEEEEeec
Q 040062 331 VAKHFFTQSVVDLSWSPDGYSLFACSLDG-TVANFHFEV 368 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg~~L~sgs~DG-~I~vwd~~~ 368 (689)
.....+.....++.|+++|++|+++.+|+ .|.+|..+.
T Consensus 284 ~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 284 GITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred EEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 22223455689999999999999988754 688888754
No 257
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.20 E-value=5.2e-09 Score=114.00 Aligned_cols=229 Identities=13% Similarity=0.063 Sum_probs=133.1
Q ss_pred eeecCCCCcEEEEEEcCCCCE--E-EEEeCCC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 60 ATLRDHFGSVNCVRWAKHGRY--I-ASGSDDQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~~--L-asgs~Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
+.+......+..-+|+|||+. + ++...++ .|.+.++.++.. +.+.. ........+||
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~---------------~~lt~---~~g~~~~p~wS 239 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG---------------KKILA---LQGNQLMPTFS 239 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc---------------eEeec---CCCCccceEEC
Confidence 344445566778899999975 3 2333343 577777776521 22222 33445568999
Q ss_pred CCCCEEEEEeC-----CCeEEEEEcCCC---eEEEEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEE--CCC-Ccce
Q 040062 135 PDDSILASGSL-----DNTIHIWNMSTG---ICTAVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWR--TSD-WSLA 202 (689)
Q Consensus 135 pdg~~Lasgs~-----Dg~I~vwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd--~~~-~~~~ 202 (689)
|||+.|+..+. |-.+.+|++..+ +.......+.......+|+|||+.|+..+ .+|...||. +.. +...
T Consensus 240 PDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~ 319 (428)
T PRK01029 240 PRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSP 319 (428)
T ss_pred CCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccce
Confidence 99998887653 223445777652 33333333334456789999999887665 466555554 432 2222
Q ss_pred eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 203 HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
..+.... ..+....|||||+.|+....... ...+.+++........ +......+....|+|++
T Consensus 320 ~~lt~~~------~~~~~p~wSPDG~~Laf~~~~~g-~~~I~v~dl~~g~~~~-Lt~~~~~~~~p~wSpDG--------- 382 (428)
T PRK01029 320 RLLTKKY------RNSSCPAWSPDGKKIAFCSVIKG-VRQICVYDLATGRDYQ-LTTSPENKESPSWAIDS--------- 382 (428)
T ss_pred EEeccCC------CCccceeECCCCCEEEEEEcCCC-CcEEEEEECCCCCeEE-ccCCCCCccceEECCCC---------
Confidence 2222211 12467889999999988765432 3445566654443322 22223345567777775
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEe-C--CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-Q--DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~--Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 349 (689)
+.|+... . ...|++||+..++...... ..+.+...+|+|-.
T Consensus 383 ------------------------~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 383 ------------------------LHLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred ------------------------CEEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 5555333 2 3568889998776654443 24456788888753
No 258
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=4e-10 Score=125.46 Aligned_cols=185 Identities=21% Similarity=0.221 Sum_probs=137.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC----cEEEEEEcCCCCEEEEEeCCCeE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG----SVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~----~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
.|+-..+.-+.++++.++.+..+.|||... ...+..+..... ...-+-++++.-++++|+.-+.|
T Consensus 89 wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~-----------~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~i 157 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSRNSLLIRDSKN-----------SSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEI 157 (967)
T ss_pred cccccchhhhcceEEEEEcCceEEEEeccc-----------CceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccE
Confidence 444455666778899999999999999875 233333321111 12233456677799999999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE-EEecCCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA-VLRGHSSL 169 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~-~l~~h~~~ 169 (689)
.+|+..... .-..+.+|.+.|.++.|+-||+++++++.|.++++|++.+.+... ..-+|+..
T Consensus 158 ivW~~~~dn-----------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaR 220 (967)
T KOG0974|consen 158 IVWKPHEDN-----------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSAR 220 (967)
T ss_pred EEEeccccC-----------------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccce
Confidence 999987431 222788999999999999999999999999999999999988776 66789999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
|+.++|+|+ +|+++++|.+.++|+.+..++ ..+..+..+ .+.++...++...+++...
T Consensus 221 vw~~~~~~n--~i~t~gedctcrvW~~~~~~l-~~y~~h~g~-----~iw~~~~~~~~~~~vT~g~ 278 (967)
T KOG0974|consen 221 VWACCFLPN--RIITVGEDCTCRVWGVNGTQL-EVYDEHSGK-----GIWKIAVPIGVIIKVTGGN 278 (967)
T ss_pred eEEEEeccc--eeEEeccceEEEEEeccccee-hhhhhhhhc-----ceeEEEEcCCceEEEeecc
Confidence 999999988 999999999999997654333 355544332 2556666555555555443
No 259
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=4.9e-09 Score=110.54 Aligned_cols=178 Identities=16% Similarity=0.302 Sum_probs=143.2
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC---CCCcEEEEEEc------C--------------CC
Q 040062 22 QPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD---HFGSVNCVRWA------K--------------HG 78 (689)
Q Consensus 22 spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~fs------p--------------dg 78 (689)
.|-+.++|....||.++||+... .++...+.. -.+.-++..|. | +.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~-----------~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t 70 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAK-----------NQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDT 70 (541)
T ss_pred CchhheEeecCCCCeEEEEEccC-----------ceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCc
Confidence 35568999999999999999986 333333321 23344444442 1 33
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL--RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
..|+-|...|.|.+|++..+ +....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+...
T Consensus 71 ~~lvlgt~~g~v~~ys~~~g-----------------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~ 133 (541)
T KOG4547|consen 71 SMLVLGTPQGSVLLYSVAGG-----------------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKE 133 (541)
T ss_pred eEEEeecCCccEEEEEecCC-----------------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEeccc
Confidence 47788888999999999887 333333 46999999999999889999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC-----CCeEE
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC-----GHFIT 231 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-----g~~l~ 231 (689)
...++..+.....+.+++.+||++.+++++ +.|++||+++.+.+..+.+|... +++++|.-+ |.+++
T Consensus 134 ~~~~~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~------v~t~~f~~~~~g~~G~~vL 205 (541)
T KOG4547|consen 134 KVIIRIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSP------VRTLSFTTLIDGIIGKYVL 205 (541)
T ss_pred ceeeeeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcc------eEEEEEEEeccccccceee
Confidence 999999999999999999999999999987 48999999999999999998766 888888766 77777
Q ss_pred EecC
Q 040062 232 TTHG 235 (689)
Q Consensus 232 ~~~~ 235 (689)
+...
T Consensus 206 ssa~ 209 (541)
T KOG4547|consen 206 SSAA 209 (541)
T ss_pred eccc
Confidence 7644
No 260
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.19 E-value=6.7e-09 Score=108.22 Aligned_cols=289 Identities=15% Similarity=0.205 Sum_probs=184.8
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeC-----------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCC---CcEEEEEE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGG-----------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHF---GSVNCVRW 74 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~-----------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~v~f 74 (689)
+.|.+ |.-++|||..+||+|-+. ...++|||+.+ +...+.+.... -.-.-++|
T Consensus 247 F~Hp~--Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~t-----------G~lkrsF~~~~~~~~~WP~frW 313 (698)
T KOG2314|consen 247 FYHPG--VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIAT-----------GLLKRSFPVIKSPYLKWPIFRW 313 (698)
T ss_pred ccCCC--ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccc-----------cchhcceeccCCCccccceEEe
Confidence 45775 999999999999999763 25799999998 66666665422 22334789
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-----CCeE
Q 040062 75 AKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-----DNTI 149 (689)
Q Consensus 75 spdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-----Dg~I 149 (689)
|.|++|+|--.. ..|.||+..+- ..+..-.-.-..|....|+|.+.+||.=.. -..+
T Consensus 314 S~DdKy~Arm~~-~sisIyEtpsf-----------------~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 314 SHDDKYFARMTG-NSISIYETPSF-----------------MLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ccCCceeEEecc-ceEEEEecCce-----------------eeecccccCCccccCcccCCCcceEEEEcccccCCcceE
Confidence 999999998776 46889876542 111111113456889999999888876432 1256
Q ss_pred EEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC----------CCeEEEEECCCCcceeeccCcccccCCcccEE
Q 040062 150 HIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD----------DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFR 219 (689)
Q Consensus 150 ~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~----------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 219 (689)
.+-.+-+++.++...-|+-.=..+.|-.+|.||+.--+ -..+.|+.++........ ......+.
T Consensus 376 tL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~------velke~vi 449 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV------VELKESVI 449 (698)
T ss_pred EEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee------eecchhee
Confidence 67777777777766555544445777778888875321 124666766554332211 11223378
Q ss_pred EEEEcCCCCeEEEecCCCCCccccceeecC----CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 220 RLGWSPCGHFITTTHGFQKPRHSAPVLERG----EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
..+|-|.|..+++.++... ...+.++... .+.....+. ......+.|+|.|
T Consensus 450 ~FaWEP~gdkF~vi~g~~~-k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG---------------------- 504 (698)
T KOG2314|consen 450 AFAWEPHGDKFAVISGNTV-KNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKG---------------------- 504 (698)
T ss_pred eeeeccCCCeEEEEEcccc-ccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCC----------------------
Confidence 8999999999888766432 3344444332 122222221 2345667788876
Q ss_pred ccccCccCCCCcEEEEE---eCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC------CCcEEEEEe
Q 040062 296 SKIGGKESQPYNVIAIG---SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL------DGTVANFHF 366 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasg---s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------DG~I~vwd~ 366 (689)
++++.+ +..|.+.++|+.......+....|. ..+.+.|.|.|+|+++++. |..-++|++
T Consensus 505 -----------~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tf 572 (698)
T KOG2314|consen 505 -----------RFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTF 572 (698)
T ss_pred -----------cEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehhhhccccceEEEEe
Confidence 555543 4578899999985333333222233 4678999999999999875 666788988
Q ss_pred ecccc
Q 040062 367 EVKEL 371 (689)
Q Consensus 367 ~~~~l 371 (689)
....+
T Consensus 573 qGrll 577 (698)
T KOG2314|consen 573 QGRLL 577 (698)
T ss_pred ecHHH
Confidence 76543
No 261
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.19 E-value=2.2e-08 Score=117.64 Aligned_cols=340 Identities=14% Similarity=0.235 Sum_probs=208.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCC----eEEEEeCCcCCCCCCCCcccceeeeeec-----CCCCcEEEEEEcCCCCEEEEEe
Q 040062 15 QIFSIDVQPGALRFATGGGDH----KVRIWNMKSVGKNFENDESTQRLLATLR-----DHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg----~V~IWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~fspdg~~Lasgs 85 (689)
.+...+|.+....+.+..... .|.+...... ...+.+..+. ...+.|.++.|.++...|+.+.
T Consensus 23 ~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~--------~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~ 94 (928)
T PF04762_consen 23 PITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQD--------GSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIAL 94 (928)
T ss_pred ccceEEEecCCCeEEEEECCCCcceEEEEEeeccC--------CceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEE
Confidence 577788887665544443322 2333333220 0123444443 3457899999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE---
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV--- 162 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~--- 162 (689)
.+|.|.+...+... +. ..+.....-...|.+++||||+..|+.++.+++|.+.+- +.+.+..
T Consensus 95 ~~Gdi~~~~~~~~~-----------~~---~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~-~fd~i~E~~l 159 (928)
T PF04762_consen 95 ASGDIILVREDPDP-----------DE---DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR-DFDPISEVPL 159 (928)
T ss_pred CCceEEEEEccCCC-----------CC---ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec-cceEEEEeec
Confidence 99999998332211 00 123333344678999999999999999999998888742 2111111
Q ss_pred ---------------------Eec------------------------CCCCeEEEEEccCCCEEEEEeC---C---CeE
Q 040062 163 ---------------------LRG------------------------HSSLVKGVAWDPIGSFIASQSD---D---KTV 191 (689)
Q Consensus 163 ---------------------l~~------------------------h~~~V~~l~~spdg~~las~s~---D---g~I 191 (689)
|+| +...-..|+|-.||.|||+.+- . +.+
T Consensus 160 ~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~i 239 (928)
T PF04762_consen 160 DSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVI 239 (928)
T ss_pred CccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEE
Confidence 100 2224457899999999998774 2 579
Q ss_pred EEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce-eeeeec--CCCCCEEEEE
Q 040062 192 IIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA-ATFDFL--GHNAPIIVVK 268 (689)
Q Consensus 192 ~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~-~~~~l~--~h~~~v~~v~ 268 (689)
+||+-+ +.+....+ +... .-..++|-|.|+.|+++... .....+.+++++... ..+.+. .....|..+.
T Consensus 240 RVy~Re-G~L~stSE-~v~g-----Le~~l~WrPsG~lIA~~q~~-~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~ 311 (928)
T PF04762_consen 240 RVYSRE-GELQSTSE-PVDG-----LEGALSWRPSGNLIASSQRL-PDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELA 311 (928)
T ss_pred EEECCC-ceEEeccc-cCCC-----ccCCccCCCCCCEEEEEEEc-CCCcEEEEEecCCcEeeeEecCCCCCCceeeEEE
Confidence 999875 55443333 1111 13568999999999998753 334666677765543 234443 4567889999
Q ss_pred EcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce--EEecccCCCCeEEEEEc
Q 040062 269 FNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL--FVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 269 fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s 346 (689)
|+.++ .+||.--.|. |.+|-..+-.=. ..+.-.....+..+.|+
T Consensus 312 Wn~ds---------------------------------~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wd 357 (928)
T PF04762_consen 312 WNSDS---------------------------------EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWD 357 (928)
T ss_pred ECCCC---------------------------------CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEEC
Confidence 99886 7888876655 999988775321 12221123345569999
Q ss_pred cCC-CeEEEEeCCCcEEEEEeec----cc------------------cccccChHHHHHHHHhccCCccCceeeeecCch
Q 040062 347 PDG-YSLFACSLDGTVANFHFEV----KE------------------LGHRLSDAELDELKRSRYGDVRGRLANLAETPA 403 (689)
Q Consensus 347 pdg-~~L~sgs~DG~I~vwd~~~----~~------------------l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd 403 (689)
|.. ..|...+.+|.+..+++.- +. ++.++...-..+......-.....|..++|+++
T Consensus 358 pe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~ 437 (928)
T PF04762_consen 358 PEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPS 437 (928)
T ss_pred CCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCC
Confidence 954 4577777767776655432 11 111111111111111111123357999999999
Q ss_pred hhhhHhhccccceeee
Q 040062 404 QLLLEAASAKETTTKK 419 (689)
Q Consensus 404 g~~Las~s~DG~v~~~ 419 (689)
+..++.-..||++.-.
T Consensus 438 ~~~~avl~~d~~l~~~ 453 (928)
T PF04762_consen 438 NSRFAVLTSDGSLSIY 453 (928)
T ss_pred CCeEEEEECCCCEEEE
Confidence 9889999999998333
No 262
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.17 E-value=6.6e-10 Score=109.38 Aligned_cols=261 Identities=14% Similarity=0.208 Sum_probs=168.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC------------CCEEEEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT------------ADVVDLN 132 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l~ 132 (689)
...-|.+|.|...|.+||+|..+|.|.+|.-..... ..+.....++.|. ..|..+.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~------------~ey~~~t~fqshepEFDYLkSleieEKinkIr 91 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK------------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIR 91 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc------------cceeeeeeeeccCcccchhhhhhhhhhhhhce
Confidence 345689999999999999999999999997654321 1223444555554 3478899
Q ss_pred EcCCCC--EEEEEeCCCeEEEEEcCCCeEEE-----------------------------------E-EecCCCCeEEEE
Q 040062 133 WSPDDS--ILASGSLDNTIHIWNMSTGICTA-----------------------------------V-LRGHSSLVKGVA 174 (689)
Q Consensus 133 ~spdg~--~Lasgs~Dg~I~vwd~~~~~~~~-----------------------------------~-l~~h~~~V~~l~ 174 (689)
|.+++. .++..+.|.+|++|-+....... . -.+|...|.+|.
T Consensus 92 w~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 92 WLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred ecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 998765 67777889999999875321100 0 035888899999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
++.|...++++. |=.|.+|++.--... +. +.+...
T Consensus 172 ~NsD~Et~lSAD-dLRINLWnlei~d~s---------------Fn-------------------------IVDIKP---- 206 (433)
T KOG1354|consen 172 VNSDKETFLSAD-DLRINLWNLEIIDQS---------------FN-------------------------IVDIKP---- 206 (433)
T ss_pred ecCccceEeecc-ceeeeeccccccCCc---------------ee-------------------------EEEccc----
Confidence 999998888775 567889987421100 00 011000
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc------
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP------ 328 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~------ 328 (689)
..+..-...|++..|+|.. .++++..++.|+|++-|++....
T Consensus 207 ~nmEeLteVITsaEFhp~~--------------------------------cn~f~YSSSKGtIrLcDmR~~aLCd~hsK 254 (433)
T KOG1354|consen 207 ANMEELTEVITSAEFHPHH--------------------------------CNVFVYSSSKGTIRLCDMRQSALCDAHSK 254 (433)
T ss_pred cCHHHHHHHHhhhccCHhH--------------------------------ccEEEEecCCCcEEEeechhhhhhcchhh
Confidence 0011123456677788773 37888899999999999984321
Q ss_pred eEEec-cc--------CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec-cccccccC--hHHHHHHHHhccCC-ccCce
Q 040062 329 LFVAK-HF--------FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV-KELGHRLS--DAELDELKRSRYGD-VRGRL 395 (689)
Q Consensus 329 ~~~~~-~~--------h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~-~~l~~~l~--~~~~~~~~~~~~g~-~~~~I 395 (689)
++... .. --.+|.++.|+++|+|+++-+. -+|++||++. .+.....+ ......+. ..|.. .--.-
T Consensus 255 lfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc-~lYEnD~IfdK 332 (433)
T KOG1354|consen 255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLC-SLYENDAIFDK 332 (433)
T ss_pred hhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHH-HHhhccchhhe
Confidence 11111 00 1246899999999999998764 4899999943 33322222 22222222 33321 11123
Q ss_pred eeeecCchhhhhHhhccccce
Q 040062 396 ANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 396 ~~l~~Spdg~~Las~s~DG~v 416 (689)
..++||.++.++.+||...-+
T Consensus 333 Fec~~sg~~~~v~TGsy~n~f 353 (433)
T KOG1354|consen 333 FECSWSGNDSYVMTGSYNNVF 353 (433)
T ss_pred eEEEEcCCcceEecccccceE
Confidence 678999999999999998888
No 263
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.17 E-value=1.3e-09 Score=107.56 Aligned_cols=259 Identities=15% Similarity=0.205 Sum_probs=185.7
Q ss_pred cceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 55 TQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
.+.+++.+.+|...|+....-|...-+++.++|.+++||--... .+.|..+... -...++++.+.
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds-------------~q~wpsI~~~--mP~~~~~~~y~ 77 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDS-------------GQYWPSIYHY--MPSPCSAMEYV 77 (404)
T ss_pred chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccc-------------cccCchhhhh--CCCCceEeeee
Confidence 46788889999999999999998888999999999999965543 1223333222 34678999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcC----CCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc
Q 040062 135 PDDSILASGSLDNTIHIWNMS----TGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~----~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~ 210 (689)
++...|+++-..|++.-+.+. ....++.+..|...|..+-|+-...++++.+.|..+.---.+.+..+..+...
T Consensus 78 ~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~-- 155 (404)
T KOG1409|consen 78 SESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFE-- 155 (404)
T ss_pred ccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEee--
Confidence 999999999999999988664 34456666779999999999999999999999966543333333322211110
Q ss_pred ccCCcccEEEEEEcCCCCeEEEe--cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTT--HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
++.-+..+.+.. -++........-...........+.+|.+.+.++.|.+..
T Consensus 156 -----------~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~--------------- 209 (404)
T KOG1409|consen 156 -----------TPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQ--------------- 209 (404)
T ss_pred -----------ccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCC---------------
Confidence 000011111110 0111111111122334455566788999999999998876
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
.+|.+|..|..+.+||+-..+-......+|...|..++..+.-+.|++++.||.|.+|+++.
T Consensus 210 ------------------~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 210 ------------------RLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred ------------------cEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 79999999999999999887776666667888999999988889999999999999999987
Q ss_pred cccccc
Q 040062 369 KELGHR 374 (689)
Q Consensus 369 ~~l~~~ 374 (689)
.....+
T Consensus 272 ~r~etp 277 (404)
T KOG1409|consen 272 KRVETP 277 (404)
T ss_pred eeecCc
Confidence 654433
No 264
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.15 E-value=2.2e-10 Score=132.79 Aligned_cols=162 Identities=17% Similarity=0.275 Sum_probs=133.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..|.+|.=||...+.+||+.||.|++|.... +..+..++ .....|+.++|+.+|..+..+..||.+.+
T Consensus 2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~-----------~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l 2277 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGH-----------GQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSL 2277 (2439)
T ss_pred CceeeecCCCCCceEEecCCCceEEEEeccC-----------CCeEEEeeccCcchhhhhhhcccCCceeeeccCCceee
Confidence 5789999999999999999999999999876 44454443 23478999999999999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEEcCCC-eEEEEEecCCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS---LDNTIHIWNMSTG-ICTAVLRGHSS 168 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs---~Dg~I~vwd~~~~-~~~~~l~~h~~ 168 (689)
|.... +.....+.|.....++.|-. ..+++++ .++.+.+||..-. ..-..-..|.+
T Consensus 2278 ~q~~p------------------k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~ 2337 (2439)
T KOG1064|consen 2278 WQASP------------------KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDG 2337 (2439)
T ss_pred cccCC------------------cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCC
Confidence 99874 56677788999999999974 6777765 5679999997532 11112277999
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.++++++-|....|++|+.+|.|++||++..++++.++
T Consensus 2338 gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~ 2375 (2439)
T KOG1064|consen 2338 GATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQ 2375 (2439)
T ss_pred CceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhh
Confidence 99999999999999999999999999999877776554
No 265
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.15 E-value=8.2e-10 Score=117.60 Aligned_cols=306 Identities=16% Similarity=0.255 Sum_probs=193.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
......|++|+.+..|+|.|+.||.+++..+.+....... ..-....+...-+++.+|...|.-+.|+.+.+.|-+..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~--~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNK--SGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccc--cccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence 3456899999999999999999999999998875322111 11123344456678999999999999999999999999
Q ss_pred CCCeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 145 LDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
.+|.|.+|-+-.+.....+. ...+.|.+++|+.||..|+....||.|.+=.++.... . .+.........+.
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRI-w------gKeLkg~~l~hv~ 163 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRI-W------GKELKGQLLAHVL 163 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeecccee-c------chhcchhecccee
Confidence 99999999998776544332 2457899999999999999999999988876653221 1 1112222356789
Q ss_pred EcCCCCeEEEecCCCCCccccceeec-CCceeeeeecCCCCCEEE-EEEcCCccccccccccccccccccccCCcccccC
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLER-GEWAATFDFLGHNAPIIV-VKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~-~~~~~~~~l~~h~~~v~~-v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
|++|.+.++..-.. ....+++. +.+....... ..|.. -.|+..+. +.....|..+...
T Consensus 164 ws~D~~~~Lf~~an----ge~hlydnqgnF~~Kl~~~---c~Vn~tg~~s~~~~----------kia~i~w~~g~~~--- 223 (1189)
T KOG2041|consen 164 WSEDLEQALFKKAN----GETHLYDNQGNFERKLEKD---CEVNGTGIFSNFPT----------KIAEIEWNTGPYQ--- 223 (1189)
T ss_pred ecccHHHHHhhhcC----CcEEEecccccHHHhhhhc---eEEeeeeeecCCCc----------cccceeeccCccc---
Confidence 99998877765332 22223322 1111111100 00111 11111110 0111112221111
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC---------cEEEEEeecccc
Q 040062 301 KESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG---------TVANFHFEVKEL 371 (689)
Q Consensus 301 ~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG---------~I~vwd~~~~~l 371 (689)
...|+...|+++-..|.+.|..-.+......+.. .-.|....|+++|..|++++.|. .|.+|..- |+.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dt--gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~-G~i 300 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDT--GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY-GHI 300 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCCCCCeEEec--ccEeecceecCCCcEEEEccCcccccCccccceEEEeccc-hhh
Confidence 1234668999999999999987665544444444 34588999999999999988642 44554322 111
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.. .+......|++++|-..|..+|-+ -|+.+
T Consensus 301 ~g-------------tlkvpg~~It~lsWEg~gLriA~A-vdsfi 331 (1189)
T KOG2041|consen 301 VG-------------TLKVPGSCITGLSWEGTGLRIAIA-VDSFI 331 (1189)
T ss_pred eE-------------EEecCCceeeeeEEcCCceEEEEE-ecceE
Confidence 11 111233468999999988888765 34444
No 266
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.14 E-value=3.2e-09 Score=102.77 Aligned_cols=288 Identities=13% Similarity=0.119 Sum_probs=179.3
Q ss_pred eEEEEEEcCCCCEEEEEe------------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC---CCC
Q 040062 15 QIFSIDVQPGALRFATGG------------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK---HGR 79 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs------------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp---dg~ 79 (689)
++.|+.-.++ .||+|+ ..|++.+|++..... .+ .......-...+..+.|.- +|.
T Consensus 16 ~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~-------~~-l~~~q~~dts~~~dm~w~~~~~~g~ 85 (339)
T KOG0280|consen 16 PICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKL-------SP-LDTLQCTDTSTEFDMLWRIRETDGD 85 (339)
T ss_pred Cccccccccc--eEEEeeEEecCCCCchheeccceEEEeeccccc-------Cc-cceeeeecccccceeeeeeccCCcc
Confidence 4555554444 777775 347889999876211 11 1111112334577888874 455
Q ss_pred -EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 040062 80 -YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI 158 (689)
Q Consensus 80 -~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~ 158 (689)
.|+-+..+|.|.+|..........+. .+...+-......++.|++.+..++++..+|.+.+-+.....
T Consensus 86 ~~l~~a~a~G~i~~~r~~~~~ss~~L~-----------~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~ 154 (339)
T KOG0280|consen 86 FNLLDAHARGQIQLYRNDEDESSVHLR-----------GLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMV 154 (339)
T ss_pred ceeeeccccceEEEEeeccceeeeeec-----------ccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceee
Confidence 56667778999999876542211110 011111111135678899989999999999999966665554
Q ss_pred EE--EEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 159 CT--AVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 159 ~~--~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.. +..+.|.-..+-..|+- +.+.+.+|++|+.+..||++..+ ++. | .
T Consensus 155 le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~---~~i----------------~--------~--- 204 (339)
T KOG0280|consen 155 LEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK---TFI----------------W--------H--- 204 (339)
T ss_pred eeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCc---cee----------------e--------e---
Confidence 43 47889999999999986 34789999999999999997211 000 0 0
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD 315 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D 315 (689)
...-|...|.++.-+|. ...+|++|+.|
T Consensus 205 --------------------n~kvH~~GV~SI~ss~~--------------------------------~~~~I~TGsYD 232 (339)
T KOG0280|consen 205 --------------------NSKVHTSGVVSIYSSPP--------------------------------KPTYIATGSYD 232 (339)
T ss_pred --------------------cceeeecceEEEecCCC--------------------------------CCceEEEeccc
Confidence 01236777888877765 34799999999
Q ss_pred CcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC
Q 040062 316 RTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG 393 (689)
Q Consensus 316 g~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~ 393 (689)
-.|++||++ -+++++.... .+.|..+.++|.-. .|+.++.-.-.+|.+.+.+.....+ ....+..|.+
T Consensus 233 e~i~~~DtRnm~kPl~~~~v--~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~--------~~~s~~~hdS 302 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAKV--GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQI--------VLPSDKIHDS 302 (339)
T ss_pred cceeeeehhcccCccccCcc--ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchhe--------eeeccccccc
Confidence 999999999 5677775543 57899999999532 3333444445677777654432110 0122333444
Q ss_pred ceeeeecCchhhhhHhhc-cccc
Q 040062 394 RLANLAETPAQLLLEAAS-AKET 415 (689)
Q Consensus 394 ~I~~l~~Spdg~~Las~s-~DG~ 415 (689)
-...-.|.....+||+++ .|..
T Consensus 303 l~YG~DWd~~~~~lATCsFYDk~ 325 (339)
T KOG0280|consen 303 LCYGGDWDSKDSFLATCSFYDKK 325 (339)
T ss_pred eeeccccccccceeeeeeccccc
Confidence 555556644455677654 3444
No 267
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.11 E-value=3.1e-09 Score=114.49 Aligned_cols=151 Identities=23% Similarity=0.270 Sum_probs=121.9
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC------------CEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG------------RYIAS 83 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg------------~~Las 83 (689)
-.+++|+|.| +||.|+. ..|.+-|..+ .+.+..+..|...|+.++|.|-. -+||+
T Consensus 18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s-----------~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs 84 (1062)
T KOG1912|consen 18 RNAADWSPSG-LIAYGSH-SLVSVVDSRS-----------LQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS 84 (1062)
T ss_pred ccccccCccc-eEEEecC-ceEEEEehhh-----------hhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence 5788999988 6777776 5788888876 78899999999999999998721 15777
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCeE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP---DD-SILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp---dg-~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
+...|.|.+||...+ ..+..+..|...+.+++|-+ +. ..|++-...++|.+|+..+|+.
T Consensus 85 aD~~GrIil~d~~~~-----------------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 85 ADISGRIILVDFVLA-----------------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccccCcEEEEEehhh-----------------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCce
Confidence 888899999999887 35555677888999999976 33 4677777788999999999999
Q ss_pred EEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 040062 160 TAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~ 196 (689)
+..+........|+.++| |.+.+...+..|.+.+-+.
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 998887777788899999 5677777777777777664
No 268
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.07 E-value=2.9e-08 Score=104.89 Aligned_cols=171 Identities=20% Similarity=0.227 Sum_probs=140.2
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE--------------------cC
Q 040062 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW--------------------SP 135 (689)
Q Consensus 76 pdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~--------------------sp 135 (689)
|...|+|....||.++||+...+....+|..... -++..+++.| +.
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~--------------~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~ 68 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIAS--------------LSGTCTYTKWGLSADYSPMKWLSLEKAKKASL 68 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchh--------------ccCcceeEEEEEEeccchHHHHhHHHHhhccC
Confidence 4567999999999999999999865555532211 1122233333 12
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL 213 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 213 (689)
|-..|+-|...|.|.+|++..++....+. .|.+.|.++.++.+-..|.+++.|+.+..|+......+.........
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~-- 146 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPL-- 146 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCc--
Confidence 44578888899999999999999988886 58999999999998899999999999999999999988888766554
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
+.+++.+|||..+++++ ..+.+|+..+.+....|.||.++|.+++|.-.
T Consensus 147 ----~~sl~is~D~~~l~~as------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~ 195 (541)
T KOG4547|consen 147 ----VSSLCISPDGKILLTAS------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTL 195 (541)
T ss_pred ----cceEEEcCCCCEEEecc------ceEEEEEccCceEEEEecCCCcceEEEEEEEe
Confidence 78999999999999875 57889999999999999999999999999765
No 269
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.03 E-value=1.6e-07 Score=97.70 Aligned_cols=253 Identities=9% Similarity=-0.026 Sum_probs=152.3
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL----------DNTIHIWNMSTG 157 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~----------Dg~I~vwd~~~~ 157 (689)
+.|.+.|..+. +.+..+..-..+- .+ +|||++.|+++.. +..|.+||+.+.
T Consensus 27 ~~v~ViD~~~~-----------------~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~ 87 (352)
T TIGR02658 27 TQVYTIDGEAG-----------------RVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH 87 (352)
T ss_pred ceEEEEECCCC-----------------EEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC
Confidence 78999999887 5566555433322 34 9999997777665 789999999999
Q ss_pred eEEEEEecCC-------CCeEEEEEccCCCEEEEEe-C-CCeEEEEECCCCcceeeccCcccccC-CcccEEEEEEcCCC
Q 040062 158 ICTAVLRGHS-------SLVKGVAWDPIGSFIASQS-D-DKTVIIWRTSDWSLAHRTDGHWAKSL-GSTFFRRLGWSPCG 227 (689)
Q Consensus 158 ~~~~~l~~h~-------~~V~~l~~spdg~~las~s-~-Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~l~~spdg 227 (689)
+.+..+.... .....++++|||++|++.. . +..|.++|+.+++.+.++..+..... ....-..+..+.||
T Consensus 88 ~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg 167 (352)
T TIGR02658 88 LPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDG 167 (352)
T ss_pred cEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecC
Confidence 9998887422 2234789999999998766 4 68999999999999888765321100 00000112223444
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEE-EEcCCccccccccccccccccccccCCcccccCccCC-C
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVV-KFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ-P 305 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v-~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~ 305 (689)
..+.......+... +... .|..+.. .....+ .+.+ +
T Consensus 168 ~~~~v~~d~~g~~~----------------------~~~~~vf~~~~~-------------~v~~rP-------~~~~~d 205 (352)
T TIGR02658 168 SLAKVGYGTKGNPK----------------------IKPTEVFHPEDE-------------YLINHP-------AYSNKS 205 (352)
T ss_pred ceEEEEecCCCceE----------------------EeeeeeecCCcc-------------ccccCC-------ceEcCC
Confidence 44433322111100 0000 0111000 000000 0011 4
Q ss_pred CcEEEEEeCCCcEEEEeCCCC-----CceEEeccc------CCCCeEEEEEccCCCeEEEEeC----------CCcEEEE
Q 040062 306 YNVIAIGSQDRTITVWTTASP-----RPLFVAKHF------FTQSVVDLSWSPDGYSLFACSL----------DGTVANF 364 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~-----~~~~~~~~~------h~~~V~~l~~spdg~~L~sgs~----------DG~I~vw 364 (689)
+.++..... |.|.+.|+... .....+... ..+.+.-++++++++.|++... .+.|.++
T Consensus 206 g~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~Vi 284 (352)
T TIGR02658 206 GRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVV 284 (352)
T ss_pred CcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEE
Confidence 466666655 99999996443 222222111 1233445999999999998532 2479999
Q ss_pred EeeccccccccChHHHHHHHHhccCCccCceeeeecCchhh-hhHhhc-cccce
Q 040062 365 HFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL-LLEAAS-AKETT 416 (689)
Q Consensus 365 d~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~-~Las~s-~DG~v 416 (689)
|..+++....+. ...++..+++|||++ +|.+.. .++.|
T Consensus 285 D~~t~kvi~~i~--------------vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 285 DAKTGKRLRKIE--------------LGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred ECCCCeEEEEEe--------------CCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 999888775543 122589999999999 777655 56767
No 270
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.02 E-value=1.3e-07 Score=101.90 Aligned_cols=274 Identities=9% Similarity=0.013 Sum_probs=153.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
.+.++++++.+|.|.-+|..+ ++.+....-.......... ++..++.++.++.+..+|..++..
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~t-----------G~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~--- 127 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAET-----------GKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKE--- 127 (377)
T ss_pred ECCEEEEECCCCeEEEEEccC-----------CcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcE---
Confidence 356888888999999999876 5555544433221112222 466788888999999999988742
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeE-----EEEEcc
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVD-LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVK-----GVAWDP 177 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~-----~l~~sp 177 (689)
.-..... ..+.+ ... .+..++.++.++.|..||.++++.+..+......+. ....
T Consensus 128 --------------~W~~~~~-~~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~-- 188 (377)
T TIGR03300 128 --------------LWRAKLS-SEVLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI-- 188 (377)
T ss_pred --------------eeeeccC-ceeecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--
Confidence 2111111 11111 111 245677778899999999999998887764332211 1111
Q ss_pred CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC-CcccEEEEEEcC--CCCeEEEecCCCCCccccceeecCCceee
Q 040062 178 IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL-GSTFFRRLGWSP--CGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 178 dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp--dg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
.+..++.+..++.+..+|.++++.+........... .......+.-+| .+..+++.... ..+..++..+.+..
T Consensus 189 ~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~----g~l~a~d~~tG~~~ 264 (377)
T TIGR03300 189 ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ----GRVAALDLRSGRVL 264 (377)
T ss_pred ECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC----CEEEEEECCCCcEE
Confidence 134677888889999999999887655432111000 000000000000 12233333221 12222332222111
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH 334 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 334 (689)
..... .. .......+..+++++.||.|..+|..+++.+.....
T Consensus 265 W~~~~-~~------------------------------------~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~ 307 (377)
T TIGR03300 265 WKRDA-SS------------------------------------YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDE 307 (377)
T ss_pred Eeecc-CC------------------------------------ccCceEeCCEEEEECCCCeEEEEECCCCcEEEcccc
Confidence 11100 00 000011346777888999999999999988765532
Q ss_pred cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 335 FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 335 ~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
.......+... .+..|++++.||.|+++|..++++...+
T Consensus 308 ~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 308 LKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred ccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 21222222222 4678999999999999999998876543
No 271
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.02 E-value=1.7e-09 Score=125.74 Aligned_cols=202 Identities=13% Similarity=0.198 Sum_probs=156.9
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 63 RDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 63 ~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
..|-..|.++.=+|...+-++|+.||.|++|....+..+ ......+. ..|+.+.|+.+|+.+..
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v---------------~~~rt~g~-s~vtr~~f~~qGnk~~i 2268 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQV---------------VCFRTAGN-SRVTRSRFNHQGNKFGI 2268 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeE---------------EEeeccCc-chhhhhhhcccCCceee
Confidence 345567888888898899999999999999988776422 11122233 78999999999999999
Q ss_pred EeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCcceeeccCcccccCCcccEE
Q 040062 143 GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS---DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFR 219 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 219 (689)
+..||.+.+|.+. .+.....+.|+.....+.|-. ..+++++ +++.+.+||.--. +
T Consensus 2269 ~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~--------~----------- 2326 (2439)
T KOG1064|consen 2269 VDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLP--------P----------- 2326 (2439)
T ss_pred eccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccC--------c-----------
Confidence 9999999999986 667777788998888888874 5666654 5788999996210 0
Q ss_pred EEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccccc
Q 040062 220 RLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
.+.+ .-..|.+.+++++|.|..
T Consensus 2327 -------~~s~-------------------------v~~~H~~gaT~l~~~P~~-------------------------- 2348 (2439)
T KOG1064|consen 2327 -------MNSL-------------------------VHTCHDGGATVLAYAPKH-------------------------- 2348 (2439)
T ss_pred -------ccce-------------------------eeeecCCCceEEEEcCcc--------------------------
Confidence 0000 013588999999999986
Q ss_pred CccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChH
Q 040062 300 GKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDA 378 (689)
Q Consensus 300 ~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~ 378 (689)
.+|++|+.+|.|++||++..+....++. ++ ...++++++..|.|+||++..-.+++.+..+
T Consensus 2349 -------qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2349 -------QLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred -------eEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence 8999999999999999998777665543 44 5678999999999999999988777766544
No 272
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=3.3e-07 Score=109.88 Aligned_cols=275 Identities=9% Similarity=0.085 Sum_probs=156.8
Q ss_pred EEEEEcCC-CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC--------------CCCcEEEEEEcCCCCEE
Q 040062 17 FSIDVQPG-ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD--------------HFGSVNCVRWAKHGRYI 81 (689)
Q Consensus 17 ~si~~spd-g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~--------------h~~~V~~v~fspdg~~L 81 (689)
..++++++ +.++++-..++.|++||... ..+..+.. +...-..|++++++..|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G------------~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~L 638 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG------------NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLL 638 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC------------CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEE
Confidence 35788875 55666667788999999764 22222211 12235789999988866
Q ss_pred EEEe-CCCeEEEEEcCCCCCccccCCCCCC--CcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC
Q 040062 82 ASGS-DDQVILIHEKKPGSGTTEFGSGEPP--DIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 82 asgs-~Dg~I~iwdl~~~~~~~~~~~~~~~--~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~ 157 (689)
+.+. ..+.|+++|+.++.. ..+...... .... ...... ..-..-.+++|++ ++.++++.+.++.|++||..++
T Consensus 639 YVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~g-g~~~~~-~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g 715 (1057)
T PLN02919 639 YVADTENHALREIDFVNETV-RTLAGNGTKGSDYQG-GKKGTS-QVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDG 715 (1057)
T ss_pred EEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCC-ChhhhH-hhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCC
Confidence 6554 457899999876521 111000000 0000 000000 0012346899999 4556677778899999999876
Q ss_pred eEEEEEecC---------------CCCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 158 ICTAVLRGH---------------SSLVKGVAWDPIGSFI-ASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 158 ~~~~~l~~h---------------~~~V~~l~~spdg~~l-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
.... +.+. -....+|+|+|++++| ++-+.++.|++||+.++.......+...
T Consensus 716 ~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~----------- 783 (1057)
T PLN02919 716 VTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT----------- 783 (1057)
T ss_pred eEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc-----------
Confidence 5432 2111 1235679999999854 4555678999999876542111100000
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
+ ++ .+.. +.+....... ..-..-..+++++++
T Consensus 784 -~-~~--~l~~------------fG~~dG~g~~----~~l~~P~Gvavd~dG---------------------------- 815 (1057)
T PLN02919 784 -F-SD--NLFK------------FGDHDGVGSE----VLLQHPLGVLCAKDG---------------------------- 815 (1057)
T ss_pred -c-Cc--cccc------------ccCCCCchhh----hhccCCceeeEeCCC----------------------------
Confidence 0 00 0000 0000000000 000112355666554
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc------------CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF------------FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
+++++-..++.|++||..++........+ .-.....++++++|+++++-+.++.|++||++++
T Consensus 816 -----~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 816 -----QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred -----cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence 78888888999999999877654333211 1125778999999998888888999999999876
Q ss_pred cc
Q 040062 370 EL 371 (689)
Q Consensus 370 ~l 371 (689)
+.
T Consensus 891 ~~ 892 (1057)
T PLN02919 891 EA 892 (1057)
T ss_pred cc
Confidence 53
No 273
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.00 E-value=6.2e-08 Score=93.99 Aligned_cols=224 Identities=15% Similarity=0.174 Sum_probs=149.4
Q ss_pred CCeEEEEEcCCCeEEE---EEecCCCCeEEEEEcc---CCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 146 DNTIHIWNMSTGICTA---VLRGHSSLVKGVAWDP---IGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~---~l~~h~~~V~~l~~sp---dg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
.|.+.+|++...+... ......+.+..+.|.- +|. .++-+..+|.|.+|..........+.+-..........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4678899887655433 1122345566777764 444 56667788999999876555444444433332223335
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
.++.|++.+..+++....+... ..-......+.......|.-+.....|+...
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~--~v~~t~~~le~vq~wk~He~E~Wta~f~~~~------------------------- 177 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSIS--GVYETEMVLEKVQTWKVHEFEAWTAKFSDKE------------------------- 177 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEE--EEecceeeeeecccccccceeeeeeecccCC-------------------------
Confidence 6788999998888775533222 1111222333444677888888888887653
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCC-CCCceEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEEEEeeccccccccC
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVANFHFEVKELGHRLS 376 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~vwd~~~~~l~~~l~ 376 (689)
.+++.+|+.|+.+..||++ .++.+..-...|...|.++.-+| .+.+|++|+.|-.|++||.++ +.+++.
T Consensus 178 -------pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn--m~kPl~ 248 (339)
T KOG0280|consen 178 -------PNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN--MGKPLF 248 (339)
T ss_pred -------CceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhc--ccCccc
Confidence 3899999999999999999 44445544456788899998876 578999999999999999864 222222
Q ss_pred hHHHHHHHHhccCCccCceeeeecCch--hhhhHhhccccce
Q 040062 377 DAELDELKRSRYGDVRGRLANLAETPA--QLLLEAASAKETT 416 (689)
Q Consensus 377 ~~~~~~~~~~~~g~~~~~I~~l~~Spd--g~~Las~s~DG~v 416 (689)
. +...+.|+.+.++|. +++|++....|--
T Consensus 249 ~-----------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~k 279 (339)
T KOG0280|consen 249 K-----------AKVGGGVWRIKHHPEIFHRLLAACMHNGAK 279 (339)
T ss_pred c-----------CccccceEEEEecchhhhHHHHHHHhcCce
Confidence 1 122356999999985 5678888777765
No 274
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=98.98 E-value=9.2e-09 Score=107.66 Aligned_cols=179 Identities=17% Similarity=0.274 Sum_probs=136.6
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
.+++.|+ ...|+-+|++. ++.+..|....+.+++|..++...+|++|+.||.|..||.+..+....+
T Consensus 147 Dly~~gs-g~evYRlNLEq-----------GrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l- 213 (703)
T KOG2321|consen 147 DLYLVGS-GSEVYRLNLEQ-----------GRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTL- 213 (703)
T ss_pred cEEEeec-CcceEEEEccc-----------cccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheee-
Confidence 3444444 35788889886 8889999888899999999998889999999999999999876432221
Q ss_pred CCCCCCcccceEEEEEecCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeEEEEEccC-
Q 040062 106 SGEPPDIENWKVAMTLRGHTA-----DVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWDPI- 178 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~spd- 178 (689)
.....+..|.. .|+++.|+-||-.+++|..+|.|.|||+++.+++..-. +...+|..+.|.+.
T Consensus 214 ----------~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~ 283 (703)
T KOG2321|consen 214 ----------DAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTD 283 (703)
T ss_pred ----------ecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccC
Confidence 11222223333 49999999889999999999999999999988776544 23467889999775
Q ss_pred -CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 179 -GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 179 -g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
++.+++.. ...++|||-.+++....+.... .+..+|+-|++-+++++..
T Consensus 284 ~q~~v~S~D-k~~~kiWd~~~Gk~~asiEpt~-------~lND~C~~p~sGm~f~Ane 333 (703)
T KOG2321|consen 284 QQNKVVSMD-KRILKIWDECTGKPMASIEPTS-------DLNDFCFVPGSGMFFTANE 333 (703)
T ss_pred CCceEEecc-hHHhhhcccccCCceeeccccC-------CcCceeeecCCceEEEecC
Confidence 45666654 4589999999998887766432 2788999999888888754
No 275
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.98 E-value=4.7e-09 Score=112.44 Aligned_cols=268 Identities=18% Similarity=0.283 Sum_probs=180.0
Q ss_pred ecCceeeecC-ceEEEEEEcCCC--CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CC
Q 040062 4 EKPSWVRHEG-MQIFSIDVQPGA--LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GR 79 (689)
Q Consensus 4 ~k~~~~~H~g-~~I~si~~spdg--~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~ 79 (689)
..|+|+.|.. -.|-.+.|+|.. .+-++......-.||++.... ....-..+.+|...|+.+.|+|. -.
T Consensus 57 ~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss--------~~aIef~lhghsraitd~n~~~q~pd 128 (1081)
T KOG0309|consen 57 TPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSS--------SNAIEFVLHGHSRAITDINFNPQHPD 128 (1081)
T ss_pred CCceeeeccCcchhcceecccCCCCceeEEecCcchhhhhhhhcCC--------ccceEEEEecCccceeccccCCCCCc
Confidence 4688998874 247778888754 455666666788899987522 24555667899999999999984 56
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-e
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-I 158 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~ 158 (689)
.|++++.|-.+..||+++.. ..+..+..-......+.|+.....+++.+..+.|.+||.+.+ .
T Consensus 129 Vlatcsvdt~vh~wd~rSp~----------------~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~ 192 (1081)
T KOG0309|consen 129 VLATCSVDTYVHAWDMRSPH----------------RPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGST 192 (1081)
T ss_pred ceeeccccccceeeeccCCC----------------cceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCc
Confidence 89999999999999998763 344444444556788899876666666677889999999875 5
Q ss_pred EEEEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
.+..+++|...|..+.|... ...+.+.+.|++|++||............. ....+..-.+.|-|.-..+.-..+
T Consensus 193 pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt-----t~~piw~~r~~Pfg~g~~~mp~~G 267 (1081)
T KOG0309|consen 193 PLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVT-----TNFPIWRGRYLPFGEGYCIMPMVG 267 (1081)
T ss_pred ceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecc-----ccCcceeccccccCceeEeccccC
Confidence 78889999999999998763 356889999999999998654332221111 111255666777655444332211
Q ss_pred CCcccccee---------ec-CCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 238 KPRHSAPVL---------ER-GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 238 ~~~~~~~i~---------~~-~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
.. .+.++ +. ........|.||...|....|-..+.... ......-
T Consensus 268 ~n--~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~-----------------------d~d~rdf 322 (1081)
T KOG0309|consen 268 GN--MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDG-----------------------DYDSRDF 322 (1081)
T ss_pred Ce--eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccC-----------------------CCCccce
Confidence 11 11121 11 12345667888888887777754431100 0011235
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 040062 308 VIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~ 325 (689)
.|++=+.|.++++|-+.+
T Consensus 323 QLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 323 QLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eEEEeecCCceEeeeccH
Confidence 789999999999997764
No 276
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.97 E-value=1.5e-07 Score=90.24 Aligned_cols=243 Identities=14% Similarity=0.038 Sum_probs=159.4
Q ss_pred EEEEcC-----CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEE
Q 040062 18 SIDVQP-----GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVIL 91 (689)
Q Consensus 18 si~~sp-----dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~ 91 (689)
.|.|-| .--+||.||..|...+|.+.+ ....+.....|...|+-+.=.- ...-+..++.|.+++
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~t----------n~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k 141 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNT----------NDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGK 141 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccC----------cccceeeecccccchhhhhhhcccccceeeccCCccee
Confidence 355555 235799999999999999986 1233344444544333222111 122466678889999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCC--CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEE-E-EEecC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA--DVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICT-A-VLRGH 166 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~-~-~l~~h 166 (689)
+.+++.+... +..|.. .+..+.+++|++++++.+....|..|.+... +.+ . .....
T Consensus 142 ~~~~~~~s~~-------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 142 TMVVSGDSNK-------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred EEEEecCccc-------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 9888765311 111332 2788999999999999999999999998653 322 2 22334
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
+..-.+..|+.....+|++..||++.|||++...........
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss-------------------------------------- 244 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS-------------------------------------- 244 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc--------------------------------------
Confidence 455678899999999999999999999999875443322211
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
.-..|.+.+..+.|++.+ .-++|+..-.-+.+.+.|+++.
T Consensus 245 ---------trp~hnGa~R~c~Fsl~g-------------------------------~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 245 ---------TRPHHNGAFRVCRFSLYG-------------------------------LLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred ---------cCCCCCCceEEEEecCCC-------------------------------cceEEEEecCcceEEEEEcccC
Confidence 113488899999999865 2256666666678999999988
Q ss_pred CceEEeccc------C-CCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 327 RPLFVAKHF------F-TQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 327 ~~~~~~~~~------h-~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+....+.-. | .+.|..-+|+.++..+.+.+++ .+.=|++.+
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 655443321 1 2347777788777777666654 344455443
No 277
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.94 E-value=7.3e-09 Score=107.46 Aligned_cols=183 Identities=18% Similarity=0.240 Sum_probs=134.7
Q ss_pred ecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 4 EKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 4 ~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
--..|.+|. ..|..+.--.+.+-+++++.|.+|++|.++...... .+..+..+++.|..+|+.+.|-.+-+++++
T Consensus 727 rL~nf~GH~-~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~----~tsaCQfTY~aHkk~i~~igfL~~lr~i~S 801 (1034)
T KOG4190|consen 727 RLCNFTGHQ-EKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEI----GTSACQFTYQAHKKPIHDIGFLADLRSIAS 801 (1034)
T ss_pred eeecccCcH-HHhHHHHhcccccceeeccCCceEEEEEeccccCcc----ccceeeeEhhhccCcccceeeeeccceeee
Confidence 345788998 588888887888899999999999999998732211 234567788999999999999999999987
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCeEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS-GSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las-gs~Dg~I~vwd~~~~~~~~~ 162 (689)
+ ||.|++||.--+........ ..-.+....|.|+. +-+..++.. ++...+|+++|.+..+....
T Consensus 802 c--D~giHlWDPFigr~Laq~~d------------apk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E 866 (1034)
T KOG4190|consen 802 C--DGGIHLWDPFIGRLLAQMED------------APKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCE 866 (1034)
T ss_pred c--cCcceeecccccchhHhhhc------------CcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceee
Confidence 6 78999999866532211100 00011122344432 113444444 47889999999999887776
Q ss_pred Eec-----CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 163 LRG-----HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 163 l~~-----h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
++. .+..+.+++..+.|++++.+-.+|.|.+.|.++++.+....
T Consensus 867 ~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 867 LKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred EEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 653 45678999999999999999999999999999998776543
No 278
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.92 E-value=2.3e-07 Score=96.38 Aligned_cols=273 Identities=15% Similarity=0.163 Sum_probs=166.5
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
..-++..++|||.|.+|++....+ |.+|.-... ..+..+. ...|..+.|+|.++||.+=+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~~-V~~~~g~~~-----------------~~l~~~~--~~~V~~~~fSP~~kYL~tw~ 90 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAAG-VECWGGPSK-----------------AKLVRFR--HPDVKYLDFSPNEKYLVTWS 90 (561)
T ss_pred cCcchhheeecCcchheehhhccc-eEEccccch-----------------hheeeee--cCCceecccCcccceeeeec
Confidence 566789999999999999876654 888876544 3333333 35699999999999999855
Q ss_pred CC---------------CeEEEEEcCCCeEEEEEecCCCC--eE-EEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 145 LD---------------NTIHIWNMSTGICTAVLRGHSSL--VK-GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 145 ~D---------------g~I~vwd~~~~~~~~~l~~h~~~--V~-~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.. +.+.+||+.++..+..+.....+ .+ -+.|+-+.+|+|-... ..++|+++ +....
T Consensus 91 ~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~-~sl~i~e~-t~n~~---- 164 (561)
T COG5354 91 REPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVG-SSLYIHEI-TDNIE---- 164 (561)
T ss_pred cCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhcc-CeEEEEec-CCccc----
Confidence 33 35999999999999998876655 44 6788988888776543 37999997 33322
Q ss_pred CcccccCCcccEEEEEEcCCCCeE--EEec-CCCCCccccceeecCCcee--eeeecCCCCCEEEEEEcCCccccccccc
Q 040062 207 GHWAKSLGSTFFRRLGWSPCGHFI--TTTH-GFQKPRHSAPVLERGEWAA--TFDFLGHNAPIIVVKFNHSMFRRNSASS 281 (689)
Q Consensus 207 ~~~~~~~~~~~i~~l~~spdg~~l--~~~~-~~~~~~~~~~i~~~~~~~~--~~~l~~h~~~v~~v~fsp~~~~~~~~~~ 281 (689)
.+.........+....|+|.++.- +.-. ...+....+.++....... ...|. ...-..+.|++.+
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf--k~~~~qLkW~~~g-------- 234 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF--KVSGVQLKWQVLG-------- 234 (561)
T ss_pred cCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE--eecccEEEEecCC--------
Confidence 111111223458889999986432 2211 1111222233333221111 11110 1111223333333
Q ss_pred cccccccccccCCcccccCccCCCCcEEEEEe-----------CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC
Q 040062 282 QEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-----------QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-----------~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
++|++-- ....++|+++........ . ...++|.+++|.|+++
T Consensus 235 -------------------------~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~-~~~~pVhdf~W~p~S~ 287 (561)
T COG5354 235 -------------------------KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-K-DLKDPVHDFTWEPLSS 287 (561)
T ss_pred -------------------------ceEEEEEEEeeecccceeccceEEEEeeccccccee-c-cccccceeeeecccCC
Confidence 2222110 124588888874433332 2 3378999999999988
Q ss_pred eEEEEe--CCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 351 SLFACS--LDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 351 ~L~sgs--~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.+++.+ .+-.+.++|+..+ +.+-+. ...-..+.|||.+++++.++-|..-
T Consensus 288 ~F~vi~g~~pa~~s~~~lr~N-l~~~~P---------------e~~rNT~~fsp~~r~il~agF~nl~ 339 (561)
T COG5354 288 RFAVISGYMPASVSVFDLRGN-LRFYFP---------------EQKRNTIFFSPHERYILFAGFDNLQ 339 (561)
T ss_pred ceeEEecccccceeecccccc-eEEecC---------------CcccccccccCcccEEEEecCCccc
Confidence 776654 7888999998866 433222 1234667788888888776655544
No 279
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.90 E-value=5e-07 Score=97.89 Aligned_cols=181 Identities=12% Similarity=0.038 Sum_probs=116.5
Q ss_pred eEEEEEEcCCCCE-EEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe-CC--
Q 040062 15 QIFSIDVQPGALR-FATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS-DD-- 87 (689)
Q Consensus 15 ~I~si~~spdg~~-Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~D-- 87 (689)
.+..-.|+|||++ ++..+. +..|+++|+.+ ++ ...+....+.+....|+|||+.|+... .+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~t-----------g~-~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~ 256 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYT-----------GK-KEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQ 256 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCC-----------Cc-EEEEecCCCcEEeeEECCCCCEEEEEEccCCC
Confidence 6789999999985 654433 35688888875 22 222333556667789999998776543 33
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCCeEEEEEe
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-N--TIHIWNMSTGICTAVLR 164 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g--~I~vwd~~~~~~~~~l~ 164 (689)
..|.++++.++. ...+..+........|+|||+.|+..+.. + .|.++|+.+++......
T Consensus 257 ~~Iy~~dl~~g~------------------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~ 318 (419)
T PRK04043 257 PDIYLYDTNTKT------------------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF 318 (419)
T ss_pred cEEEEEECCCCc------------------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCcc
Confidence 467777776652 22333333333456899999977766532 2 68888998777644332
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCC---------CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDD---------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
. ... ...|+|||++|+..+.. ..|.+.|+.++....... .. ......|+|||+.|+....
T Consensus 319 ~-g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~-~~-------~~~~p~~SPDG~~I~f~~~ 387 (419)
T PRK04043 319 H-GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTA-NG-------VNQFPRFSSDGGSIMFIKY 387 (419)
T ss_pred C-CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCC-CC-------CcCCeEECCCCCEEEEEEc
Confidence 1 111 24899999988876643 368888887776433222 11 1234789999999988755
Q ss_pred C
Q 040062 236 F 236 (689)
Q Consensus 236 ~ 236 (689)
.
T Consensus 388 ~ 388 (419)
T PRK04043 388 L 388 (419)
T ss_pred c
Confidence 3
No 280
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=1.2e-05 Score=81.15 Aligned_cols=221 Identities=17% Similarity=0.173 Sum_probs=135.3
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc-CCCCEEEEEeCCCe
Q 040062 71 CVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS-PDDSILASGSLDNT 148 (689)
Q Consensus 71 ~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-pdg~~Lasgs~Dg~ 148 (689)
++.|.+ ++.++++--..+.|..|+..++ ....+.... ...+++. +++ .|+.+..+ .
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~------------------~~~~~~~~~--~~G~~~~~~~g-~l~v~~~~-~ 61 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG------------------EVEVIDLPG--PNGMAFDRPDG-RLYVADSG-G 61 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT------------------EEEEEESSS--EEEEEEECTTS-EEEEEETT-C
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC------------------eEEEEecCC--CceEEEEccCC-EEEEEEcC-c
Confidence 578988 6777777777899999999876 222222222 7777787 564 45555544 4
Q ss_pred EEEEEcCCCeEEEEEec-----CCCCeEEEEEccCCCEEEEEeCC--------CeEEEEECCCCcceeeccCcccccCCc
Q 040062 149 IHIWNMSTGICTAVLRG-----HSSLVKGVAWDPIGSFIASQSDD--------KTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~-----h~~~V~~l~~spdg~~las~s~D--------g~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
+.++|..+++....... .......++++++|++.++.... |.|..++.. ++....... .
T Consensus 62 ~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-------~ 133 (246)
T PF08450_consen 62 IAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-------L 133 (246)
T ss_dssp EEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-------E
T ss_pred eEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-------c
Confidence 56669988866544442 34567889999999988876644 457777766 443332221 2
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCC-ceee---eeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE-WAAT---FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~-~~~~---~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
...+.++|+|+++.|+.+.........+.+-.... .... ..+....+..-.+++..+
T Consensus 134 ~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~------------------- 194 (246)
T PF08450_consen 134 GFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSD------------------- 194 (246)
T ss_dssp SSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTT-------------------
T ss_pred ccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCC-------------------
Confidence 23688999999999887765443322222211111 1111 112121222444555444
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE-ccCCCeEEEEe
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW-SPDGYSLFACS 356 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spdg~~L~sgs 356 (689)
++++++....+.|.++|.+ ++.+..+... ...+++++| -++.+.|++.+
T Consensus 195 --------------G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 195 --------------GNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --------------S-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred --------------CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 4788877788999999987 8888777765 458999999 46777776654
No 281
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.81 E-value=5e-08 Score=98.64 Aligned_cols=166 Identities=16% Similarity=0.217 Sum_probs=114.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE---EeCCCeEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS---GSDDQVIL 91 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las---gs~Dg~I~ 91 (689)
.+..+.+++.+++||++..+....++++....+ ..+++..... ...-+++.|..+...... .++...+.
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~d 135 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------GAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFD 135 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-------cceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeee
Confidence 345566788999999998888877887765111 1233333322 122234444444443333 34445566
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE-EecCCCCe
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV-LRGHSSLV 170 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~-l~~h~~~V 170 (689)
+|....+ ....+-+|-..+++++|+||+++++++..|..|+|-....-..+.. .-||...|
T Consensus 136 i~s~~~~------------------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFV 197 (390)
T KOG3914|consen 136 ILSADSG------------------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFV 197 (390)
T ss_pred eeccccc------------------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhhe
Confidence 6655433 2334457999999999999999999999999999977655444433 45799999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
..++.-+ +..|++++.|++|++||+.+++.+..+..
T Consensus 198 S~isl~~-~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 198 STISLTD-NYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred eeeeecc-CceeeecCCCCcEEEEecccCCcccccch
Confidence 9999875 55689999999999999999998876653
No 282
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.81 E-value=1.4e-07 Score=91.90 Aligned_cols=276 Identities=14% Similarity=0.229 Sum_probs=168.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC------------CcEEEEEEcCCCC--
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF------------GSVNCVRWAKHGR-- 79 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~v~fspdg~-- 79 (689)
..|+++.|...|.||+||...|.|.+|.-+..... ..+.+..++.|. ..|+.+.|..++.
T Consensus 27 d~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~c------eykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 27 DKITAVEFDETGLYLATGDKGGRVVLFEREKSYGC------EYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ceeeEEEeccccceEeecCCCceEEEeeccccccc------chhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 57999999999999999999999999987653210 022333344443 3588999986543
Q ss_pred EEEEEeCCCeEEEEEcCCCCCc--------cccC--CCC----------CCCcccceE-----EEE-EecCCCCEEEEEE
Q 040062 80 YIASGSDDQVILIHEKKPGSGT--------TEFG--SGE----------PPDIENWKV-----AMT-LRGHTADVVDLNW 133 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~--------~~~~--~~~----------~~~~~~~~~-----~~~-l~~h~~~V~~l~~ 133 (689)
.++..+.|++|++|.+...... ..|. .+. +.-.+.... .+. ...|...|.++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 5666678999999998654210 0010 000 000111111 111 2468888999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCC-----CCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceee
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTG---ICTAVLRGHS-----SLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~---~~~~~l~~h~-----~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
+.|...++++. |=.|.+|++.-. --+..++.|. .-|++..|+|.. +.+...+..|.|++-|++...+-..
T Consensus 181 NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn 259 (460)
T COG5170 181 NSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259 (460)
T ss_pred cCchheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence 99888888764 678999988642 1233445454 457888999954 5677777889999999985332111
Q ss_pred ccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccc
Q 040062 205 TDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEV 284 (689)
Q Consensus 205 ~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~ 284 (689)
-...+. ....+... --+.+-...|..+.|++++
T Consensus 260 ~~klfe----------~~~D~v~~--------------------------~ff~eivsSISD~kFs~ng----------- 292 (460)
T COG5170 260 SKKLFE----------LTIDGVDV--------------------------DFFEEIVSSISDFKFSDNG----------- 292 (460)
T ss_pred chhhhh----------hccCcccc--------------------------hhHHHHhhhhcceEEcCCC-----------
Confidence 000000 00000000 0011223456777787775
Q ss_pred ccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC-CceEEeccc-----------CCCCe---EEEEEccCC
Q 040062 285 KAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP-RPLFVAKHF-----------FTQSV---VDLSWSPDG 349 (689)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~-~~~~~~~~~-----------h~~~V---~~l~~spdg 349 (689)
+++++-+. -+|+|||.+.. .++.++... ....| ..+.||-|.
T Consensus 293 ----------------------ryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~ 349 (460)
T COG5170 293 ----------------------RYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDD 349 (460)
T ss_pred ----------------------cEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCc
Confidence 56665433 57999999865 455544221 12233 347788899
Q ss_pred CeEEEEeCCCcEEEEEe
Q 040062 350 YSLFACSLDGTVANFHF 366 (689)
Q Consensus 350 ~~L~sgs~DG~I~vwd~ 366 (689)
+.+++|+.....-+|-.
T Consensus 350 ~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 350 KHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ccccccccccceeeecc
Confidence 99999998888777753
No 283
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=1.4e-06 Score=91.66 Aligned_cols=255 Identities=15% Similarity=0.208 Sum_probs=162.6
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC--EEEE-----EeCCCe
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR--YIAS-----GSDDQV 89 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~--~Las-----gs~Dg~ 89 (689)
++..|+.|..+.|--. .+.|++|+... .....+.+ |...|+.+.+||.+. .+|+ .+.-..
T Consensus 129 W~~qfs~dEsl~arlv-~nev~f~~~~~----------f~~~~~kl--~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~ 195 (566)
T KOG2315|consen 129 WVPQFSIDESLAARLV-SNEVQFYDLGS----------FKTIQHKL--SVSGITMLSLSPGPEPPFVAVYVPEKKGAPAS 195 (566)
T ss_pred cccccccchhhhhhhh-cceEEEEecCC----------ccceeeee--eccceeeEEecCCCCCceEEEEccCCCCCCcE
Confidence 5888998886544322 36899999875 12223333 577899999998643 4443 344568
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEE--EEeCC---------CeEEEEEcCCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILA--SGSLD---------NTIHIWNMSTG 157 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~La--sgs~D---------g~I~vwd~~~~ 157 (689)
|+||.+........ ...+.| ...+=..+.|++-|. +|+ +...| .+++++++...
T Consensus 196 vri~~~~~~~~~~~------------~a~ksF--Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~ 261 (566)
T KOG2315|consen 196 VRIYKYPEEGQHQP------------VANKSF--FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGE 261 (566)
T ss_pred EEEeccccccccch------------hhhccc--cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCc
Confidence 99998763321110 011111 123345677887666 333 23333 37888888744
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEE--eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQ--SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+...+. ..++|.+++|+|+++-|+++ -.--.+.|||++. ..+..+.... -.++-|+|.|++|+.++
T Consensus 262 s~~V~L~-k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~egp--------RN~~~fnp~g~ii~lAG- 330 (566)
T KOG2315|consen 262 SVSVPLL-KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPEGP--------RNTAFFNPHGNIILLAG- 330 (566)
T ss_pred eEEEecC-CCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCCCC--------ccceEECCCCCEEEEee-
Confidence 4444444 57999999999999877654 3556899999964 3333332211 35789999999999874
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ- 314 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~- 314 (689)
+++....+.+||....+....+.. ..-+.+.|+|+| .+|+++..
T Consensus 331 FGNL~G~mEvwDv~n~K~i~~~~a--~~tt~~eW~PdG---------------------------------e~flTATTa 375 (566)
T KOG2315|consen 331 FGNLPGDMEVWDVPNRKLIAKFKA--ANTTVFEWSPDG---------------------------------EYFLTATTA 375 (566)
T ss_pred cCCCCCceEEEeccchhhcccccc--CCceEEEEcCCC---------------------------------cEEEEEecc
Confidence 555788999999888766655543 345678898887 67777664
Q ss_pred -----CCcEEEEeCCCCCceEEecccCCCCeEEEEEcc
Q 040062 315 -----DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP 347 (689)
Q Consensus 315 -----Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp 347 (689)
|+.++||++. |+.+.... .......++|-|
T Consensus 376 PRlrvdNg~Kiwhyt-G~~l~~~~--f~sEL~qv~W~P 410 (566)
T KOG2315|consen 376 PRLRVDNGIKIWHYT-GSLLHEKM--FKSELLQVEWRP 410 (566)
T ss_pred ccEEecCCeEEEEec-Cceeehhh--hhHhHhheeeee
Confidence 6788999974 44444322 122466677765
No 284
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.79 E-value=8.6e-08 Score=96.95 Aligned_cols=165 Identities=17% Similarity=0.234 Sum_probs=114.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE---e
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG---S 144 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg---s 144 (689)
.+..+.+++.+++||.+..+....++++..... .++...... -...-+.+.|..+......+ +
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkag 129 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSC-VPKRPTAISFIREDTSVLVADKAG 129 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEee-cccCcceeeeeeccceEEEEeecC
Confidence 345566788999999999988888888876532 223333332 22233444454444444433 4
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEc
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
....+.+|....+ +...+-+|-+.+..++|+||+++|+++..|..|++-....-..+..
T Consensus 130 D~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Ies-------------------- 188 (390)
T KOG3914|consen 130 DVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIES-------------------- 188 (390)
T ss_pred Cceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhh--------------------
Confidence 4556666766553 3444567999999999999999999999999999876643111111
Q ss_pred CCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 225 PCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
-..||..-|..++.-++
T Consensus 189 -------------------------------fclGH~eFVS~isl~~~-------------------------------- 205 (390)
T KOG3914|consen 189 -------------------------------FCLGHKEFVSTISLTDN-------------------------------- 205 (390)
T ss_pred -------------------------------hccccHhheeeeeeccC--------------------------------
Confidence 13478888888888766
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
..|++++.|++|++||+.+++.+..+
T Consensus 206 --~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 206 --YLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred --ceeeecCCCCcEEEEecccCCccccc
Confidence 57999999999999999999988544
No 285
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.78 E-value=5.1e-06 Score=90.10 Aligned_cols=141 Identities=13% Similarity=0.032 Sum_probs=92.5
Q ss_pred cEEEEEEcCCCCE-EEEEeCC---CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 68 SVNCVRWAKHGRY-IASGSDD---QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 68 ~V~~v~fspdg~~-Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
.+...+|+|||+. ++..+.+ ..|.++|+.++. . ..+...........|+|||+.|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~-----------------~-~~lt~~~g~~~~~~~SPDG~~la~~ 250 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGK-----------------K-EKIASSQGMLVVSDVSKDGSKLLLT 250 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCc-----------------E-EEEecCCCcEEeeEECCCCCEEEEE
Confidence 6788999999985 6654443 468888887762 2 2222344556678899999866644
Q ss_pred -eC--CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-CC--eEEEEECCCCcceeeccCcccccCCccc
Q 040062 144 -SL--DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-DK--TVIIWRTSDWSLAHRTDGHWAKSLGSTF 217 (689)
Q Consensus 144 -s~--Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (689)
+. +..|.++|+.+++... +..+........|+|||+.|+..+. .+ .|.++|+.+++..+..... .
T Consensus 251 ~~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g------~-- 321 (419)
T PRK04043 251 MAPKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHG------K-- 321 (419)
T ss_pred EccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCC------C--
Confidence 32 3578888987776443 4334433345689999987776663 23 5778888776654433211 0
Q ss_pred EEEEEEcCCCCeEEEecCC
Q 040062 218 FRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 218 i~~l~~spdg~~l~~~~~~ 236 (689)
....|+|||++|+.....
T Consensus 322 -~~~~~SPDG~~Ia~~~~~ 339 (419)
T PRK04043 322 -NNSSVSTYKNYIVYSSRE 339 (419)
T ss_pred -cCceECCCCCEEEEEEcC
Confidence 123899999999887653
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.76 E-value=1.1e-06 Score=84.33 Aligned_cols=240 Identities=11% Similarity=-0.013 Sum_probs=147.3
Q ss_pred EEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEE
Q 040062 70 NCVRWAK-----HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASG 143 (689)
Q Consensus 70 ~~v~fsp-----dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasg 143 (689)
+.+.|.| .-.+||.|+.-|...+|...+... .......|...|+-+.=..|. ..+..+
T Consensus 71 ~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~----------------h~~~cd~snn~v~~~~r~cd~~~~~~i~ 134 (344)
T KOG4532|consen 71 TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDG----------------HLYQCDVSNNDVTLVKRYCDLKFPLNIA 134 (344)
T ss_pred ecccccchHhhccccEEEeccccceeeeecccCccc----------------ceeeecccccchhhhhhhcccccceeec
Confidence 3455655 345899999999999999987642 223333344444333222222 256777
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
+.|.++++.++.-+..-.......-.+.++.+++|++++++.++...|..|.+........ .+
T Consensus 135 sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~---------------~~-- 197 (344)
T KOG4532|consen 135 SNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIE---------------NI-- 197 (344)
T ss_pred cCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceee---------------ee--
Confidence 8899999888865433322221222378899999999999999888999998864221100 00
Q ss_pred cCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 224 SPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 224 spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
........-.+..|+...
T Consensus 198 --------------------------------~~a~t~D~gF~~S~s~~~------------------------------ 215 (344)
T KOG4532|consen 198 --------------------------------YEAPTSDHGFYNSFSEND------------------------------ 215 (344)
T ss_pred --------------------------------EecccCCCceeeeeccCc------------------------------
Confidence 000111222345555443
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceE----EecccCCCCeEEEEEccCCC--eEEEEeCCCcEEEEEeeccccccccCh
Q 040062 304 QPYNVIAIGSQDRTITVWTTASPRPLF----VAKHFFTQSVVDLSWSPDGY--SLFACSLDGTVANFHFEVKELGHRLSD 377 (689)
Q Consensus 304 ~~~~~lasgs~Dg~I~iwd~~~~~~~~----~~~~~h~~~V~~l~~spdg~--~L~sgs~DG~I~vwd~~~~~l~~~l~~ 377 (689)
..+|++.+||++.|||++...... .....|.+.+..+.|++-|. +|+..-.-+.+.+.|+++..-.+.+..
T Consensus 216 ---~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 216 ---LQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred ---ceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 689999999999999999765433 23345889999999998663 456665677899999887654433322
Q ss_pred HHHHHHHHhccCCcc-CceeeeecCchhhhhHhhccc
Q 040062 378 AELDELKRSRYGDVR-GRLANLAETPAQLLLEAASAK 413 (689)
Q Consensus 378 ~~~~~~~~~~~g~~~-~~I~~l~~Spdg~~Las~s~D 413 (689)
.+ .++..|. ..|..-.|+.++.-+...+.+
T Consensus 293 ~~------d~~~~~~tq~ifgt~f~~~n~s~~v~~e~ 323 (344)
T KOG4532|consen 293 PD------DVERKHNTQHIFGTNFNNENESNDVKNEL 323 (344)
T ss_pred Cc------cccccccccccccccccCCCcccccccch
Confidence 11 1111122 236777777766555444433
No 287
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.76 E-value=6.4e-06 Score=88.83 Aligned_cols=258 Identities=11% Similarity=0.009 Sum_probs=142.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
++..+++++.+|.|+.+|..+ ++.+...... +.+.+.-.. .+..++.++.++.+..||.+++....
T Consensus 104 ~~~~v~v~~~~g~l~ald~~t-----------G~~~W~~~~~-~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W- 169 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAED-----------GKELWRAKLS-SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLW- 169 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCC-----------CcEeeeeccC-ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceee-
Confidence 456788888899999999876 4555444322 222211111 34567778889999999998874321
Q ss_pred cCCCCCCCcccceEEEEEecCCCCE-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC----C---eE
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADV-----VDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS----L---VK 171 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V-----~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~----~---V~ 171 (689)
.+......+ ...... +..++.+..++.+..+|..+++.+........ . +.
T Consensus 170 ----------------~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~ 231 (377)
T TIGR03300 170 ----------------TYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLV 231 (377)
T ss_pred ----------------EEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhh
Confidence 111111100 011111 24677888889999999999987765431110 0 00
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 172 GVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 172 ~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
.+.-+| .+..++.++.+|.++.||..+++.+....... .... ..++..+++... ...+..++..
T Consensus 232 ~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~--------~~~p--~~~~~~vyv~~~----~G~l~~~d~~ 297 (377)
T TIGR03300 232 DVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS--------YQGP--AVDDNRLYVTDA----DGVVVALDRR 297 (377)
T ss_pred ccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC--------ccCc--eEeCCEEEEECC----CCeEEEEECC
Confidence 010111 35678888889999999999988776554211 0111 123444444332 1223333332
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL 329 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~ 329 (689)
+.............. ..+| ...+..+++++.+|.|+++|..+++.+
T Consensus 298 tG~~~W~~~~~~~~~---~ssp-------------------------------~i~g~~l~~~~~~G~l~~~d~~tG~~~ 343 (377)
T TIGR03300 298 SGSELWKNDELKYRQ---LTAP-------------------------------AVVGGYLVVGDFEGYLHWLSREDGSFV 343 (377)
T ss_pred CCcEEEccccccCCc---cccC-------------------------------EEECCEEEEEeCCCEEEEEECCCCCEE
Confidence 222111110000000 0000 002368889999999999999999998
Q ss_pred EEecccCCCCe-EEEEEccCCCeEEEEeCCCcEEEE
Q 040062 330 FVAKHFFTQSV-VDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 330 ~~~~~~h~~~V-~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
..+... ...+ .+..+. + ..|+.++.||.|+.|
T Consensus 344 ~~~~~~-~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 344 ARLKTD-GSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEcC-CCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 877642 3222 222332 3 458899999999876
No 288
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=1.3e-07 Score=103.25 Aligned_cols=176 Identities=20% Similarity=0.227 Sum_probs=135.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+.|+|++++ +++|+.|.-+|.|++++... .. .+...|... .-+|.|++||+.||.|.|-
T Consensus 40 D~is~~av~--~~~~~~GtH~g~v~~~~~~~------------~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~ 98 (846)
T KOG2066|consen 40 DAISCCAVH--DKFFALGTHRGAVYLTTCQG------------NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIG 98 (846)
T ss_pred hHHHHHHhh--cceeeeccccceEEEEecCC------------cc-ccccccccc------ccCCceEEEecCCCcEEEe
Confidence 467888887 67899999999999999874 33 444446544 5689999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-----CCEEEEEeCCCeEEEEEcCC--CeEEEEEecC
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-----DSILASGSLDNTIHIWNMST--GICTAVLRGH 166 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-----g~~Lasgs~Dg~I~vwd~~~--~~~~~~l~~h 166 (689)
.+.+.. ....+. ...++..++++|| .+.+++|+.-| +.++.-+- .+....+...
T Consensus 99 sl~~~~-----------------~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~ 159 (846)
T KOG2066|consen 99 SLFTDD-----------------EITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG 159 (846)
T ss_pred eccCCc-----------------cceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence 888763 222222 4567999999998 46899999888 77775331 1122245556
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
.++|.+++|. |++||-++++| |++||+...+.+..+..+........+-..+.|.++.+.++.
T Consensus 160 eG~I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIG 222 (846)
T KOG2066|consen 160 EGPIHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIG 222 (846)
T ss_pred ccceEEEEec--CcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEEe
Confidence 7899999998 88999999887 899999999998888877766666667788999988776664
No 289
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.75 E-value=9.1e-08 Score=93.22 Aligned_cols=264 Identities=17% Similarity=0.265 Sum_probs=159.0
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC------------CCEEEEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT------------ADVVDLN 132 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l~ 132 (689)
....|++|.|...|.||++|...|.|.+|.-..... ..++....+++|. ..|..+.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~------------ceykf~teFQshe~EFDYLkSleieEKin~I~ 92 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYG------------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIE 92 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccc------------cchhhhhhhcccccchhhhhhccHHHHhhhee
Confidence 345699999999999999999999999998765421 1113334444443 3477888
Q ss_pred EcCCC--CEEEEEeCCCeEEEEEcCCCeE-------------------------------------EE-----EE-ecCC
Q 040062 133 WSPDD--SILASGSLDNTIHIWNMSTGIC-------------------------------------TA-----VL-RGHS 167 (689)
Q Consensus 133 ~spdg--~~Lasgs~Dg~I~vwd~~~~~~-------------------------------------~~-----~l-~~h~ 167 (689)
|..++ ..++..+.|.+|++|.+..... +. .+ ..|.
T Consensus 93 w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~ 172 (460)
T COG5170 93 WFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHP 172 (460)
T ss_pred eecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccce
Confidence 87654 3677778899999998753210 00 01 2466
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.++.|+.|...++++. |=.|.+|++.-.. +.+- +.+
T Consensus 173 yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D--------------------------~sFn--------------IVD 211 (460)
T COG5170 173 YHINSISFNSDKETLLSAD-DLRINLWNLEIID--------------------------GSFN--------------IVD 211 (460)
T ss_pred eEeeeeeecCchheeeecc-ceeeeeccccccC--------------------------CceE--------------EEe
Confidence 6677777777776666554 4567777763210 0000 000
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
... ..+..-...|++..|+|.. .+++...+..|.|++-|++...
T Consensus 212 iKP----~nmeeLteVItSaeFhp~~--------------------------------cn~fmYSsSkG~Ikl~DlRq~a 255 (460)
T COG5170 212 IKP----HNMEELTEVITSAEFHPEM--------------------------------CNVFMYSSSKGEIKLNDLRQSA 255 (460)
T ss_pred ccC----ccHHHHHHHHhhcccCHhH--------------------------------cceEEEecCCCcEEehhhhhhh
Confidence 000 0001112345666777764 2677778888999999998432
Q ss_pred c------eEEec---------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc-cccccC--hHHHHHHHHhccC
Q 040062 328 P------LFVAK---------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE-LGHRLS--DAELDELKRSRYG 389 (689)
Q Consensus 328 ~------~~~~~---------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~-l~~~l~--~~~~~~~~~~~~g 389 (689)
. ++... ..-..+|.++.|+++|+|+++-+. -+|++||++..+ ....+. ....+.+. ..|.
T Consensus 256 lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~-d~YE 333 (460)
T COG5170 256 LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELN-DVYE 333 (460)
T ss_pred hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHH-hhhh
Confidence 1 11110 011347899999999999988775 489999997644 333332 22222222 2222
Q ss_pred -CccCceeeeecCchhhhhHhhccccceeee
Q 040062 390 -DVRGRLANLAETPAQLLLEAASAKETTTKK 419 (689)
Q Consensus 390 -~~~~~I~~l~~Spdg~~Las~s~DG~v~~~ 419 (689)
+.--.-..+.||.|...+.+||.....+.+
T Consensus 334 nDaifdkFeisfSgd~~~v~sgsy~NNfgiy 364 (460)
T COG5170 334 NDAIFDKFEISFSGDDKHVLSGSYSNNFGIY 364 (460)
T ss_pred ccceeeeEEEEecCCcccccccccccceeee
Confidence 111123568899999999999987776333
No 290
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.75 E-value=1.3e-05 Score=78.46 Aligned_cols=242 Identities=15% Similarity=0.130 Sum_probs=135.1
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 72 VRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHI 151 (689)
Q Consensus 72 v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~v 151 (689)
++.+.||++||.- .|..|.|-..+.+-... ......-+.....-+.++||||+.+||.+...|+|++
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si------------~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSI------------IGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRV 69 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchhe------------eEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEE
Confidence 5677899988875 46677776555431100 0112222333455788999999999999999999999
Q ss_pred EEcCCCeEEEEEec-------CCCCeEEEEEccCC------CEEEEEeCCCeEEEEECCC-----CcceeeccCcccccC
Q 040062 152 WNMSTGICTAVLRG-------HSSLVKGVAWDPIG------SFIASQSDDKTVIIWRTSD-----WSLAHRTDGHWAKSL 213 (689)
Q Consensus 152 wd~~~~~~~~~l~~-------h~~~V~~l~~spdg------~~las~s~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~ 213 (689)
||+.. ..+..+.. -...|.+|.|.+.. ..|++-..+|.++-|-+.. .+..+.+.... .
T Consensus 70 fdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~---~ 145 (282)
T PF15492_consen 70 FDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS---H 145 (282)
T ss_pred Eeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc---c
Confidence 99965 33334332 12567777776522 2455666777777776532 22222222111 1
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
....|..+.|+|.-+.|++++.......... .....+++-..-.+
T Consensus 146 yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~--------------a~~~GLtaWRiL~~--------------------- 190 (282)
T PF15492_consen 146 YPHGINSAVYHPKHRLLLVGGCEQNQDGMSK--------------ASSCGLTAWRILSD--------------------- 190 (282)
T ss_pred CCCceeEEEEcCCCCEEEEeccCCCCCcccc--------------ccccCceEEEEcCC---------------------
Confidence 1223788999999888887755333211100 00111111111100
Q ss_pred CcccccCccCCCCcEEEEEeCCC------cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDR------TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.|.+.. +....|+ +..+|.+-+.+.. ..+......|..|..||||..|++...+|.|.+|++.
T Consensus 191 ---------~Pyyk~-v~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP 259 (282)
T PF15492_consen 191 ---------SPYYKQ-VTSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP 259 (282)
T ss_pred ---------CCcEEE-ccccCccccccccccceeeccceeee-eccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence 000111 1111111 1123333222111 1122235679999999999999999999999999998
Q ss_pred ccccccccC
Q 040062 368 VKELGHRLS 376 (689)
Q Consensus 368 ~~~l~~~l~ 376 (689)
+-.+.....
T Consensus 260 sL~~~~~W~ 268 (282)
T PF15492_consen 260 SLRLQRSWK 268 (282)
T ss_pred cchhhcccc
Confidence 766554433
No 291
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.72 E-value=5.2e-08 Score=104.65 Aligned_cols=293 Identities=17% Similarity=0.254 Sum_probs=179.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC--CEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG--RYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg--~~Lasgs~Dg~I~ 91 (689)
..+..+.++|.|+-+|.++.-| +.+-|+.... ..++.++.+. .-.|-.+.|+|.. .+-+.......-.
T Consensus 25 ~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~-------~ppr~l~h~t--pw~vad~qws~h~a~~~wiVsts~qkai 94 (1081)
T KOG0309|consen 25 GGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF-------TPPRWLHHIT--PWQVADVQWSPHPAKPYWIVSTSNQKAI 94 (1081)
T ss_pred CcccceeeccccchhhhhhhcC-eEEEeccCCC-------CCceeeeccC--cchhcceecccCCCCceeEEecCcchhh
Confidence 3788999999999999998866 6667776521 1233443332 2347788898853 2444444445566
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCe-EEEEEecCCCC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGI-CTAVLRGHSSL 169 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~-~~~~l~~h~~~ 169 (689)
+|++...... ..-..+.+|...|+++.|+++.. .|++++.|..+..||+++.. .+.....-...
T Consensus 95 iwnlA~ss~~--------------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~ 160 (1081)
T KOG0309|consen 95 IWNLAKSSSN--------------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA 160 (1081)
T ss_pred hhhhhcCCcc--------------ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeeccccc
Confidence 8988754311 45566789999999999999765 89999999999999998753 34444433445
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
-..+.|+.....+...+..+.|++||++.+.....
T Consensus 161 asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~--------------------------------------------- 195 (1081)
T KOG0309|consen 161 ASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLC--------------------------------------------- 195 (1081)
T ss_pred CceeeecccCcchhhhccCCceEEEeccCCCcceE---------------------------------------------
Confidence 56789987554455556667899999976432110
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL 329 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~ 329 (689)
.+.+|...+..+.|+... ...+.+++.|++|++||.......
T Consensus 196 ------s~K~~vs~vn~~~fnr~~--------------------------------~s~~~s~~~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 196 ------SLKGHVSSVNSIDFNRFK--------------------------------YSEIMSSSNDGTVKFWDYSKSTTE 237 (1081)
T ss_pred ------EecccceeeehHHHhhhh--------------------------------hhhhcccCCCCceeeecccccccc
Confidence 123345556666665542 256888999999999998765433
Q ss_pred EEecccCCCCeEEEEEccCCC--eEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCch----
Q 040062 330 FVAKHFFTQSVVDLSWSPDGY--SLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPA---- 403 (689)
Q Consensus 330 ~~~~~~h~~~V~~l~~spdg~--~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spd---- 403 (689)
.........+|.--++.|-|. ++.---.+..+.+++.+...+....... ....+.|.+|.+.|....|-..
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~---~~pVh~F~GH~D~V~eFlWR~r~e~~ 314 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDL---NTPVHTFVGHDDVVLEFLWRKRKECD 314 (1081)
T ss_pred cceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccC---CcceeeecCcchHHHHHhhhhccccc
Confidence 222222245677777777443 3332222335555555443322110000 0001445556665655555322
Q ss_pred ------hhhhHhhccccce
Q 040062 404 ------QLLLEAASAKETT 416 (689)
Q Consensus 404 ------g~~Las~s~DG~v 416 (689)
.-.|++=|.|.++
T Consensus 315 ~d~d~rdfQLVTWSkD~~l 333 (1081)
T KOG0309|consen 315 GDYDSRDFQLVTWSKDQTL 333 (1081)
T ss_pred CCCCccceeEEEeecCCce
Confidence 2356677777777
No 292
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.71 E-value=8.9e-06 Score=83.90 Aligned_cols=146 Identities=17% Similarity=0.315 Sum_probs=117.4
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCC-eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDH-KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg-~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
+|.+ .|.-..+.-+++-++.|..|| .+-|||... .....+...-+.|.++..+++|++++.+.+..
T Consensus 357 ~~~~-~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~------------~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~ 423 (668)
T COG4946 357 GKKG-GVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG------------GEVKRIEKDLGNIEAVKVSPDGKKVVVANDRF 423 (668)
T ss_pred CCCC-ceEEEEEccCCcceEEeccCCceEEEEecCC------------ceEEEeeCCccceEEEEEcCCCcEEEEEcCce
Confidence 4664 688888988888999999999 999999985 45566677888999999999999999999889
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC----eEEEEEcCCCeEEEEEe
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN----TIHIWNMSTGICTAVLR 164 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg----~I~vwd~~~~~~~~~l~ 164 (689)
.+.+.|++++. ....-+...+-|+.+.|||+++++|.+--+| .|+++|+..++....-.
T Consensus 424 el~vididngn-----------------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 424 ELWVIDIDNGN-----------------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred EEEEEEecCCC-----------------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 99999999883 3333344567799999999999999887665 79999998877665443
Q ss_pred cCCCCeEEEEEccCCCEEEEEe
Q 040062 165 GHSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s 186 (689)
..+.=.+-+|+|++++|.--+
T Consensus 487 -~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCCCCcEEEEEe
Confidence 444445678999999877654
No 293
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.70 E-value=7.7e-08 Score=100.03 Aligned_cols=299 Identities=15% Similarity=0.162 Sum_probs=177.7
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.-.++.+.+|...|..++--.+.+-+++++.|++|++|.++.... .+..-.+..++..|+.+|.++.|-.
T Consensus 725 ~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD----------~~~tsaCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 725 HIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD----------EIGTSACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred eeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC----------ccccceeeeEhhhccCcccceeeee
Confidence 345677889999999988888888999999999999999986421 1111246778889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEec---C--CCCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCcceeeccCcc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRG---H--SSLVKGVAWDPIGSFIA-SQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~---h--~~~V~~l~~spdg~~la-s~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
+.++++++ ||.|++||.--+..+..+.. | .+.|.|+. +-+...++ .++...+|+++|.+..+-..++....
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcn 871 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSCEWTCELKVCN 871 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccccceeeEEecc
Confidence 88888765 79999999877776654321 2 23344432 11333333 34678899999999866555544322
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
.. .....+++++..+.|+.++++-.. ..+.+.+.++....- .|.|..-.+
T Consensus 872 a~-~Pna~~R~iaVa~~GN~lAa~LSn----Gci~~LDaR~G~vIN------------swrpmecdl------------- 921 (1034)
T KOG4190|consen 872 AP-GPNALTRAIAVADKGNKLAAALSN----GCIAILDARNGKVIN------------SWRPMECDL------------- 921 (1034)
T ss_pred CC-CCchheeEEEeccCcchhhHHhcC----CcEEEEecCCCceec------------cCCcccchh-------------
Confidence 11 223447899999999999886542 233344433332211 122211000
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEE-EeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITV-WTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i-wd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
-....+..+.++....|.++.+ |....+......+.. ..+..- .-.-|..|+++.....+.||.-.
T Consensus 922 ---------lqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpp-pepahf--lqsvgpSLV~a~~Gn~lgVYad~- 988 (1034)
T KOG4190|consen 922 ---------LQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPP-PEPAHF--LQSVGPSLVTAQNGNILGVYADS- 988 (1034)
T ss_pred ---------hhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCC-Ccchhh--hhccCceeEEeccCcEEEEEecc-
Confidence 0001223356777777888888 876666544433221 111110 11235667777766677777522
Q ss_pred cccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 369 KELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 369 ~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
+++-. ...+.+.+.....+..+.++--|=..-+..|...|.+
T Consensus 989 a~~ha------~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~I 1030 (1034)
T KOG4190|consen 989 AELHA------ESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAI 1030 (1034)
T ss_pred hhhhh------hhhhccccccccCCccceeeeccccchhhccCCCCce
Confidence 21110 0001112222334456777777766666667776665
No 294
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.66 E-value=9.7e-06 Score=97.52 Aligned_cols=172 Identities=14% Similarity=0.090 Sum_probs=105.9
Q ss_pred EEEEEEcCCCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecC-----------------CCCcEEEEEEcC-
Q 040062 16 IFSIDVQPGALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRD-----------------HFGSVNCVRWAK- 76 (689)
Q Consensus 16 I~si~~spdg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-----------------h~~~V~~v~fsp- 76 (689)
-..|+|++++..|+++. .++.|+++|+.+ ..+.++.+ .-..-..++|+|
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~------------~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~ 693 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVN------------ETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPV 693 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCC------------CEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecC
Confidence 47788999888766654 457899999864 12222211 011235799999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMS 155 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~ 155 (689)
++.++++.+.++.|++||..++......+.+...... ... .....-.....|+|+|++..| ++-+.++.|++||+.
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~-g~~--~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~ 770 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLN-GSS--GTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLK 770 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCC-CCc--cccccccCccEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence 5667777788899999998775321100000000000 000 000112346779999999854 455567899999998
Q ss_pred CCeEEEEEec---------------------CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce
Q 040062 156 TGICTAVLRG---------------------HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA 202 (689)
Q Consensus 156 ~~~~~~~l~~---------------------h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~ 202 (689)
++.......+ .-....+++|+++|+++++-..++.|++||..++...
T Consensus 771 tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 771 TGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 7653211100 0113468999999998888889999999999775543
No 295
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.65 E-value=1.2e-06 Score=95.11 Aligned_cols=265 Identities=16% Similarity=0.185 Sum_probs=159.2
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-----------
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD----------- 136 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----------- 136 (689)
.-.++.|+|.| +||.|+. ..|.+-|..+- +.++.+..|...|+.+.|.|-
T Consensus 17 N~~A~Dw~~~G-LiAygsh-slV~VVDs~s~-----------------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~ 77 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH-SLVSVVDSRSL-----------------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSS 77 (1062)
T ss_pred cccccccCccc-eEEEecC-ceEEEEehhhh-----------------hhhhccccCccceeEEEeccCCCchhccCccc
Confidence 36788999887 6777765 56777777665 677888889999999999872
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc---CC-CEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 137 -DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP---IG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 137 -g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp---dg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
.-.||++...|.|.+||...+..+..+..|..++..++|-+ +. .+|+.-..-.+|.+|+..+|+...+......
T Consensus 78 ~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~- 156 (1062)
T KOG1912|consen 78 SQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE- 156 (1062)
T ss_pred cceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc-
Confidence 12678888899999999999999999999999999999987 33 4666666677999999999998877654322
Q ss_pred cCCcccEEEEEEcCCC-CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCc-----cccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCG-HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSM-----FRRNSASSQEVK 285 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg-~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~-----~~~~~~~~~~~~ 285 (689)
...++.+.|-. +++...+.. +...........+ ...+...+....+. ............
T Consensus 157 -----iLs~f~~DPfd~rh~~~l~s~-g~vl~~~~l~~se---------p~~pgk~~qI~sd~Sdl~~lere~at~ns~t 221 (1062)
T KOG1912|consen 157 -----ILSCFRVDPFDSRHFCVLGSK-GFVLSCKDLGLSE---------PDVPGKEFQITSDHSDLAHLERETATGNSTT 221 (1062)
T ss_pred -----ceeeeeeCCCCcceEEEEccC-ceEEEEeccCCCC---------CCCCceeEEEecCccchhhhhhhhhcccccc
Confidence 24455666532 333222111 1111111110000 00011111111000 000000000000
Q ss_pred cccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC--CeEEEEeCCCcEEE
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG--YSLFACSLDGTVAN 363 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg--~~L~sgs~DG~I~v 363 (689)
.......--.+.....+++..+-++.......+.|+|++-..++..+.-. .+.+.-+.|-|++ ..|++.-.||.+.+
T Consensus 222 s~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpie-r~~akfv~vlP~~~rd~LfclH~nG~lti 300 (1062)
T KOG1912|consen 222 STPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIE-RGGAKFVDVLPDPRRDALFCLHSNGRLTI 300 (1062)
T ss_pred CCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEec-cCCcceeEeccCCCcceEEEEecCCeEEE
Confidence 00000000000111222444444445556778999999988888776543 4556677777776 46999999999999
Q ss_pred EEeec
Q 040062 364 FHFEV 368 (689)
Q Consensus 364 wd~~~ 368 (689)
|--..
T Consensus 301 rvrk~ 305 (1062)
T KOG1912|consen 301 RVRKE 305 (1062)
T ss_pred EEeec
Confidence 97654
No 296
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.64 E-value=1.4e-07 Score=93.39 Aligned_cols=156 Identities=16% Similarity=0.205 Sum_probs=119.3
Q ss_pred EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCC
Q 040062 29 ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGE 108 (689)
Q Consensus 29 atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~ 108 (689)
++.|.+..|-|-|+++ .....|. ..+.|.++.|...+.++..|...|.|..+|++.....
T Consensus 228 fs~G~sqqv~L~nvet------------g~~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG------- 287 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVET------------GHQQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG------- 287 (425)
T ss_pred ecccccceeEEEEeec------------ccccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC-------
Confidence 3344456788888875 3334444 5677999999998999999999999999999876211
Q ss_pred CCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeE---EEEEecCCCCeEEE--EEccCCCEE
Q 040062 109 PPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGIC---TAVLRGHSSLVKGV--AWDPIGSFI 182 (689)
Q Consensus 109 ~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~---~~~l~~h~~~V~~l--~~spdg~~l 182 (689)
.. .....+. |...|+++..-. ++++|++.+.+|+|.+||.+--++ +..+.+|...-.-+ -.++....+
T Consensus 288 ----~~-~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I 361 (425)
T KOG2695|consen 288 ----NG-WCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSI 361 (425)
T ss_pred ----CC-cceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceE
Confidence 11 2344443 889999988776 688999999999999999987666 88888886543333 345667789
Q ss_pred EEEeCCCeEEEEECCCCcceeeccCccc
Q 040062 183 ASQSDDKTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 183 as~s~Dg~I~iwd~~~~~~~~~~~~~~~ 210 (689)
+++++|...+||.++.+.++.++..+..
T Consensus 362 ~s~GdDcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 362 FSVGDDCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred EEccCeeEEEEEecccCceeeccCCCCc
Confidence 9999999999999999999988876543
No 297
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.63 E-value=2.4e-05 Score=78.82 Aligned_cols=239 Identities=14% Similarity=0.130 Sum_probs=154.1
Q ss_pred EEEEEEcC-CCCEEEEEeCCC-eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe--
Q 040062 69 VNCVRWAK-HGRYIASGSDDQ-VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-- 144 (689)
Q Consensus 69 V~~v~fsp-dg~~Lasgs~Dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-- 144 (689)
...++.+| .+..++.+-.-| ...+||..++.....+.. ..-+.|.+|. +||+||++|++.-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a---------~~gRHFyGHg------~fs~dG~~LytTEnd 71 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWA---------PPGRHFYGHG------VFSPDGRLLYTTEND 71 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcC---------CCCCEEecCE------EEcCCCCEEEEeccc
Confidence 34677888 555666666655 467899988753322211 1223455554 6999999998863
Q ss_pred ---CCCeEEEEEcC-CCeEEEEEecCCCCeEEEEEccCCCEEEEEeC------------------CCeEEEEECCCCcce
Q 040062 145 ---LDNTIHIWNMS-TGICTAVLRGHSSLVKGVAWDPIGSFIASQSD------------------DKTVIIWRTSDWSLA 202 (689)
Q Consensus 145 ---~Dg~I~vwd~~-~~~~~~~l~~h~~~V~~l~~spdg~~las~s~------------------Dg~I~iwd~~~~~~~ 202 (689)
..|.|-|||.. +.+.+..+..|.-.-..+.+.|||+.|+++.. +-++...|..+++++
T Consensus 72 ~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll 151 (305)
T PF07433_consen 72 YETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALL 151 (305)
T ss_pred cCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCcee
Confidence 45799999998 77888899888877778899999988877631 234556677788877
Q ss_pred eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc---ceeecCCceeeeee-----cCCCCCEEEEEEcCCcc
Q 040062 203 HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA---PVLERGEWAATFDF-----LGHNAPIIVVKFNHSMF 274 (689)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~---~i~~~~~~~~~~~l-----~~h~~~v~~v~fsp~~~ 274 (689)
.+...+.. .....++.+++.++|..++..-......... .++..+.....+.. ..-.+.+-+|+++.++
T Consensus 152 ~q~~Lp~~--~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g- 228 (305)
T PF07433_consen 152 EQVELPPD--LHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDG- 228 (305)
T ss_pred eeeecCcc--ccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCC-
Confidence 76443211 1223499999999999888775443322222 22333332222221 2335678888888775
Q ss_pred ccccccccccccccccccCCcccccCccCCCCcEE-EEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEE
Q 040062 275 RRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLF 353 (689)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 353 (689)
.++ +++=..+.+.+||..+++.+..... ..+..++..+++ +++
T Consensus 229 --------------------------------~~ia~tsPrGg~~~~~d~~tg~~~~~~~l---~D~cGva~~~~~-f~~ 272 (305)
T PF07433_consen 229 --------------------------------RLIAVTSPRGGRVAVWDAATGRLLGSVPL---PDACGVAPTDDG-FLV 272 (305)
T ss_pred --------------------------------CEEEEECCCCCEEEEEECCCCCEeecccc---CceeeeeecCCc-eEE
Confidence 444 5555678999999999988775542 346667776666 555
Q ss_pred EEeCCCcEE
Q 040062 354 ACSLDGTVA 362 (689)
Q Consensus 354 sgs~DG~I~ 362 (689)
+.+ .|.+.
T Consensus 273 ssG-~G~~~ 280 (305)
T PF07433_consen 273 SSG-QGQLI 280 (305)
T ss_pred eCC-CccEE
Confidence 544 45443
No 298
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=7.1e-07 Score=91.33 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=175.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-CC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-DQ 88 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-Dg 88 (689)
-|. ..|+.+... -.+++.+++.||+++.|.-... ..-+.+..+..|.+.|.+++.+-++.++.|.+. |.
T Consensus 7 mhr-d~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh 76 (558)
T KOG0882|consen 7 MHR-DVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH 76 (558)
T ss_pred ccc-ceeeeEeee-hhheEEeeecchhhhhcCCCCc--------cceeehhhhHHHHHHHHhhhccccceeEeeccCccc
Confidence 466 467766654 4568999999999999986531 124667778889999999999999999999888 99
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC--CEEEE-EeCCCeEEEEEcCCCe--EEEEE
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD--SILAS-GSLDNTIHIWNMSTGI--CTAVL 163 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg--~~Las-gs~Dg~I~vwd~~~~~--~~~~l 163 (689)
.++++|+.+-....- ..+..-...+ ++..++.. ..|++ .-.++.|.|+|-.... ....-
T Consensus 77 s~KvfDvEn~Dminm---------------iKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fk 140 (558)
T KOG0882|consen 77 SVKVFDVENFDMINM---------------IKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFK 140 (558)
T ss_pred ceeEEEeeccchhhh---------------cccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceec
Confidence 999999986521100 0011111111 11222221 13333 3467899999976543 23333
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.-|.++|.++.+.+.+..+++....|.|.-|.... .+.... .+.|.+...
T Consensus 141 klH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~---------------~l~~~~K~e-------------- 191 (558)
T KOG0882|consen 141 KLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRT---------------NLNFELKHE-------------- 191 (558)
T ss_pred ccccCceEEEEeeccccceeeccccceeEeecCCCcccCccc---------------ccccccccc--------------
Confidence 45999999999999999999999999999998753 111110 011111110
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
...+.+........++.|+|++ ..+.+-+.|..|++++
T Consensus 192 ---------TdLy~f~K~Kt~pts~Efsp~g---------------------------------~qistl~~DrkVR~F~ 229 (558)
T KOG0882|consen 192 ---------TDLYGFPKAKTEPTSFEFSPDG---------------------------------AQISTLNPDRKVRGFV 229 (558)
T ss_pred ---------chhhcccccccCccceEEcccc---------------------------------CcccccCcccEEEEEE
Confidence 1111122234455667777775 5666667788888888
Q ss_pred CCCCCceEEeccc-------------------------------CC-CCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 323 TASPRPLFVAKHF-------------------------------FT-QSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 323 ~~~~~~~~~~~~~-------------------------------h~-~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
+++++.++.+... |. ..-+.++|...|++|+.++-=| |+|+++.+++
T Consensus 230 ~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~ 308 (558)
T KOG0882|consen 230 FKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNT 308 (558)
T ss_pred eccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCe
Confidence 8777654433211 11 1235578888899999888654 8999999998
Q ss_pred cccccChHH
Q 040062 371 LGHRLSDAE 379 (689)
Q Consensus 371 l~~~l~~~~ 379 (689)
....+-..|
T Consensus 309 v~ri~gk~e 317 (558)
T KOG0882|consen 309 VVRILGKDE 317 (558)
T ss_pred EEEEeccch
Confidence 876665544
No 299
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.61 E-value=1.2e-06 Score=96.68 Aligned_cols=182 Identities=13% Similarity=0.141 Sum_probs=127.3
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~ 157 (689)
+..++.|+....+..+|+.+. +..+...-....|.-|+. ++++|.+|...|+|.+-|.++.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~-----------------~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~ 207 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTE-----------------KETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF 207 (1118)
T ss_pred Ccceeecchhhheeeeecccc-----------------eeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC
Confidence 345556666566666666655 233333333334666665 5889999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEEeC---------CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSD---------DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~s~---------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 228 (689)
+.+.++..|++.|..+. -.|+.|++++. |.-|++||++....+.-+..+..
T Consensus 208 ~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~------------------ 267 (1118)
T KOG1275|consen 208 ETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYG------------------ 267 (1118)
T ss_pred ceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccC------------------
Confidence 99999999999997654 55999999875 45578888887665544432211
Q ss_pred eEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcE
Q 040062 229 FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNV 308 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 308 (689)
+ .-+.|.|.. -..
T Consensus 268 ----------------------------------P-~flrf~Psl--------------------------------~t~ 280 (1118)
T KOG1275|consen 268 ----------------------------------P-QFLRFHPSL--------------------------------TTR 280 (1118)
T ss_pred ----------------------------------c-hhhhhcccc--------------------------------cce
Confidence 1 223455543 257
Q ss_pred EEEEeCCCcEEEEe---CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 309 IAIGSQDRTITVWT---TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 309 lasgs~Dg~I~iwd---~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+++++..|...+-| +.+...-..........+..+++|++|+.|+.|..+|.|.+|.
T Consensus 281 ~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 281 LAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred EEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88888889999988 3333222222223345599999999999999999999999998
No 300
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.61 E-value=1.1e-05 Score=92.15 Aligned_cols=288 Identities=14% Similarity=0.236 Sum_probs=159.7
Q ss_pred cCceeeecCc-eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 5 KPSWVRHEGM-QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 5 k~~~~~H~g~-~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
-+.+....|+ .|.++.|.-+..-++.+..+|.|.+-|.++ ..+.....-...|.+++||||++.|+.
T Consensus 59 ~~s~~~~~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et------------~~~eivg~vd~GI~aaswS~Dee~l~l 126 (1265)
T KOG1920|consen 59 AESFLPEDGDDEIVSVQFLADTNSICVITALGDIILVDPET------------LELEIVGNVDNGISAASWSPDEELLAL 126 (1265)
T ss_pred eecccCcCCCcceEEEEEecccceEEEEecCCcEEEEcccc------------cceeeeeeccCceEEEeecCCCcEEEE
Confidence 3444444443 899999999999999999999999998875 333334445678999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-----HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI 158 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~ 158 (689)
.+.++++.+-+..-. .+....- ..+....+-|-.....| -|+ .|.....+....+
T Consensus 127 iT~~~tll~mT~~f~------------------~i~E~~L~~d~~~~sk~v~VGwGrkeTqf-rgs-~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 127 ITGRQTLLFMTKDFE------------------PIAEKPLDADDERKSKFVNVGWGRKETQF-RGS-EGRQAARQKIEKE 186 (1265)
T ss_pred EeCCcEEEEEecccc------------------chhccccccccccccccceecccccceee-ecc-hhhhccccccccc
Confidence 998888877543211 1100000 01111122222111100 000 1111111111111
Q ss_pred EEEE-EecCCCCeEEEEEccCCCEEEEEe-----CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 159 CTAV-LRGHSSLVKGVAWDPIGSFIASQS-----DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 159 ~~~~-l~~h~~~V~~l~~spdg~~las~s-----~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
.... ...++ .=..|+|--||.|+++.. ..+.|++||.+ +.+-..-... ...-.+++|-|.|..+++
T Consensus 187 k~~~~~~~~~-~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~------~~l~~~LsWkPsgs~iA~ 258 (1265)
T KOG1920|consen 187 KALEQIEQDD-HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPV------EGLQHSLSWKPSGSLIAA 258 (1265)
T ss_pred ccccchhhcc-CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcc------cccccceeecCCCCeEee
Confidence 1001 11122 224689999999999843 23799999986 3332221111 111357899999999998
Q ss_pred ecCCCCCccccceeecCCceee---eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE
Q 040062 233 THGFQKPRHSAPVLERGEWAAT---FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI 309 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~---~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 309 (689)
...... ...+.+++++..... ..+......+..++|+.++ .+|
T Consensus 259 iq~~~s-d~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~s---------------------------------diL 304 (1265)
T KOG1920|consen 259 IQCKTS-DSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNS---------------------------------DIL 304 (1265)
T ss_pred eeecCC-CCcEEEEecCCccccccccCCcccccchheeeecCCC---------------------------------Cce
Confidence 754333 235666665543322 1222334447888888776 566
Q ss_pred EE---EeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEee
Q 040062 310 AI---GSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFE 367 (689)
Q Consensus 310 as---gs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~ 367 (689)
++ ......|++|-+.+-.-.....-....... +.|+|.. +.|.+-..+|.+.++++.
T Consensus 305 Av~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~-~~W~p~~~~~L~v~~~sG~~~v~~~~ 365 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL-LMWDPVTEKTLHVLRESGQRLVRDFA 365 (1265)
T ss_pred eeeecccccceEEEEEecCeEEEEEEEEecccccc-ccccCCCceeEEEEecCCcEEEEEEE
Confidence 65 444455999988765322111111111111 7888843 345554467777777654
No 301
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.58 E-value=6e-07 Score=85.79 Aligned_cols=253 Identities=11% Similarity=0.103 Sum_probs=141.6
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCC--CCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGK--NFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~--~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
-+|.+-.|..+.|+-+- .|+++..++.+..+..-.... ..+.+. .-...+.+..|.+.-.+-+.+-.++.++++..
T Consensus 32 ~~~~d~~~~~~~~v~~~-~lf~~e~~~~~ss~g~~r~~~~~~~~rt~-~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~ 109 (319)
T KOG4714|consen 32 MQHADVKLSKVSLSAEY-ILFTGETSSQIISLGKGRGRCISLWERDD-GIDPFKVLAKNSEIDPNDACTMTDNRVCIGYA 109 (319)
T ss_pred ccccceEEEEeechhhh-eeecccchhheeeeccceEEEechhhccc-CcCceeeeeccCCCCCcccccccCCceEecCC
Confidence 35665567777777544 566666666665555432100 000111 11223333345544444444445677999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCeEEE
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-----LDNTIHIWNMSTGICTA 161 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-----~Dg~I~vwd~~~~~~~~ 161 (689)
||.+.+++.+... ............--+.++...+..+.++. .-+..++|+++..+.+.
T Consensus 110 dg~~~v~s~~~~~----------------~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~ 173 (319)
T KOG4714|consen 110 DGSLAVFSTDKDL----------------ALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLI 173 (319)
T ss_pred CceEEEEechHHH----------------hhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccc
Confidence 9999999876521 01111111111111222222344443332 22345667665443332
Q ss_pred EEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 162 VLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
.-+.....|.+++-+|.. ..+++|++||.+.+||.++......
T Consensus 174 ~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S------------------------------------ 217 (319)
T KOG4714|consen 174 PSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS------------------------------------ 217 (319)
T ss_pred ccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH------------------------------------
Confidence 222233449999999954 5677888999999999987421111
Q ss_pred cccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 241 HSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
.+..|..++..+.|+|.. +..|+++++||.+..
T Consensus 218 ---------------~l~ahk~~i~eV~FHpk~--------------------------------p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 218 ---------------LLKAHKAEIWEVHFHPKN--------------------------------PEHLFTCSEDGSLWH 250 (319)
T ss_pred ---------------HHHHhhhhhhheeccCCC--------------------------------chheeEecCCCcEEE
Confidence 245688899999999883 578899999999999
Q ss_pred EeCCCCCceEEec------------------------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 321 WTTASPRPLFVAK------------------------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 321 wd~~~~~~~~~~~------------------------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
||..+. .+..-. .....+|+++. --|..|++|+.-+-|++++
T Consensus 251 wdas~~-~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTT-FLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCc-eEEecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEec
Confidence 997631 111100 00011233322 2477888888888888875
No 302
>PF09453 HIRA_B: HIRA B motif; InterPro: IPR019015 The HirA B (Histone regulatory homologue A binding) motif is the essential binding interface between IPR011494 from INTERPRO and ASF1a, of approx. 40 residues. It forms an antiparallel beta-hairpin that binds perpendicular to the strands of the beta-sandwich of ASF1a N-terminal core domain, via beta-sheet, salt bridge and van der Waals interactions []. The two histone chaperone proteins, HIRA and ASF1a, form a heterodimer with histones H3 and H4. HIRA is the human orthologue of Hir proteins known to silence histone gene expression and create transcriptionally silent heterochromatin in yeast, flies, plants and humans. The HIR complex is composed of HIR1, HIR2, HIR3 and HPC2, and interacts with ASF1. The HIR complex cooperates with ASF1 to promote replication-independent chromatin assembly. The HIR complex is also required for the periodic repression of three of the four histone gene loci during cell cycle as well as for autogenous regulation of the HTA1-HTB1 locus by H2A and H2B. DNA-binding by the HIR complex may repress transcription by inhibiting nucleosome remodeling by the SWI/SNF complex. The HIR complex may also be required for transcriptional silencing of centromeric, telomeric and mating-type loci in the absence of CAF-1. ; GO: 0003682 chromatin binding, 0006355 regulation of transcription, DNA-dependent, 0016568 chromatin modification, 0005634 nucleus; PDB: 2I32_E.
Probab=98.56 E-value=3.3e-08 Score=57.64 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=13.6
Q ss_pred cceeEECCCCceeeceeeccCC
Q 040062 476 KQREYRRPDGRKRIIPEAVGVP 497 (689)
Q Consensus 476 ~q~~~~~~dg~~r~~p~~~~~~ 497 (689)
||+++++|||||||+|+||+..
T Consensus 1 kq~~t~~k~GKkRi~P~liss~ 22 (24)
T PF09453_consen 1 KQKETITKDGKKRIAPTLISSS 22 (24)
T ss_dssp S-EEEE-TTS-EEEE-EE----
T ss_pred CCceEeccCCceEeccEEeecc
Confidence 6999999999999999999864
No 303
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=4.5e-06 Score=84.60 Aligned_cols=258 Identities=11% Similarity=0.082 Sum_probs=146.3
Q ss_pred eeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 59 LATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
...+..|...|..++|+|..+ +|..++.+..|.|.|+++. ..+..+..| ..+++++|.-|.
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~-----------------~~vssy~a~-~~~wSC~wDlde 247 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS-----------------CVVSSYIAY-NQIWSCCWDLDE 247 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccc-----------------eeeeheecc-CCceeeeeccCC
Confidence 445667788899999999776 7889999999999999987 566667767 789999999876
Q ss_pred C-EEEEEeCCCeEEEEEcCCCeE-EEEEec--CCCCeEEEEE------ccCCCEEEEEeCCCeEEEEECC----CCccee
Q 040062 138 S-ILASGSLDNTIHIWNMSTGIC-TAVLRG--HSSLVKGVAW------DPIGSFIASQSDDKTVIIWRTS----DWSLAH 203 (689)
Q Consensus 138 ~-~Lasgs~Dg~I~vwd~~~~~~-~~~l~~--h~~~V~~l~~------spdg~~las~s~Dg~I~iwd~~----~~~~~~ 203 (689)
. ++..|...|.|.|||++..+- +..+.+ ...+|..++. .+.+.+|+..+.+ +..|... ...++.
T Consensus 248 ~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl 325 (463)
T KOG1645|consen 248 RHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL 325 (463)
T ss_pred cceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc
Confidence 5 778888999999999986432 222221 1233433332 2345555555544 5566543 222222
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.+..+ ..+.++++.+-.++++....-+......+..-.. ..+ .-..+|....-.-.+...
T Consensus 326 ele~p-------G~cismqy~~~snh~l~tyRs~pn~p~~r~il~~-----~d~-~dG~pVc~~r~~~~Gs~~------- 385 (463)
T KOG1645|consen 326 ELEPP-------GICISMQYHGVSNHLLLTYRSNPNFPQSRFILGR-----IDF-RDGFPVCGKRRTYFGSKQ------- 385 (463)
T ss_pred ccCCC-------cceeeeeecCccceEEEEecCCCCCccceeeeee-----ecc-ccCceeeeecccccCCcc-------
Confidence 22211 1245666666667777765543222222111000 000 000111111100000000
Q ss_pred cccccccccCCcccccCccCCCCcEE-EEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEcc-C-CCeEEEEeCCCc
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP-D-GYSLFACSLDGT 360 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp-d-g~~L~sgs~DG~ 360 (689)
... ... .......+.++| .+++..+.+.+||..+.+.+..+.. ..+|.+++... + +.||++-. |..
T Consensus 386 ---~kl---~t~--~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~~--~epv~Dicp~~~n~~syLa~LT-d~~ 454 (463)
T KOG1645|consen 386 ---TKL---STT--QAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLAL--SEPVLDICPNDTNGSSYLALLT-DDR 454 (463)
T ss_pred ---ccc---ccc--cceeccccccEEEEecCCcceeEEeccchhheeeeccc--CcceeecceeecCCcchhhhee-cce
Confidence 000 000 000011223444 4555668899999999999888765 57888888654 3 34666555 668
Q ss_pred EEEEEee
Q 040062 361 VANFHFE 367 (689)
Q Consensus 361 I~vwd~~ 367 (689)
++||..+
T Consensus 455 v~Iyk~e 461 (463)
T KOG1645|consen 455 VHIYKNE 461 (463)
T ss_pred EEEEecC
Confidence 8888754
No 304
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.50 E-value=9.9e-07 Score=84.34 Aligned_cols=148 Identities=18% Similarity=0.306 Sum_probs=96.1
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEEeC-----CCeEEEEEcC
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASGSD-----DQVILIHEKK 96 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~-----Dg~I~iwdl~ 96 (689)
-.++.+++++.||.+.+++.+.. ....+.+. .|.+. .+..+...+++|.++.. -+..++|+++
T Consensus 99 ~~~t~V~~~~~dg~~~v~s~~~~----------~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~ 167 (319)
T KOG4714|consen 99 MTDNRVCIGYADGSLAVFSTDKD----------LALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLD 167 (319)
T ss_pred ccCCceEecCCCceEEEEechHH----------Hhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeeccc
Confidence 35678999999999999998741 11111111 11111 12222334555544322 2345566665
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeEEEE
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGIC-TAVLRGHSSLVKGVA 174 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~-~~~l~~h~~~V~~l~ 174 (689)
... ....-......|.+++-+|..+ .+++|+.||.+-+||++.... ...++.|...++.+-
T Consensus 168 p~~-----------------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~ 230 (319)
T KOG4714|consen 168 PIK-----------------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVH 230 (319)
T ss_pred ccc-----------------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhhee
Confidence 432 1111111123389999998654 777888999999999988643 445788999999999
Q ss_pred Ecc-CCCEEEEEeCCCeEEEEECCC
Q 040062 175 WDP-IGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 175 ~sp-dg~~las~s~Dg~I~iwd~~~ 198 (689)
|+| ++..|+++++||.+.-||..+
T Consensus 231 FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 231 FHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccCCCchheeEecCCCcEEEEcCCC
Confidence 999 568999999999999999865
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.49 E-value=0.0003 Score=70.93 Aligned_cols=214 Identities=13% Similarity=0.106 Sum_probs=126.7
Q ss_pred EEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEc-CCCCEEEEEeCCCeEEEEEc
Q 040062 18 SIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA-KHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 18 si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs-pdg~~Lasgs~Dg~I~iwdl 95 (689)
++.|.+ ++.++++--..+.|+.|+... .. ...+.... ...+++. +++. |+.+..++ +.++|+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~-----------~~-~~~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDT-----------GE-VEVIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTT-----------TE-EEEEESSS--EEEEEEECTTSE-EEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCC-----------Ce-EEEEecCC--CceEEEEccCCE-EEEEEcCc-eEEEec
Confidence 567888 677777766789999999886 22 22222222 6777887 6655 44455544 555688
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEe--c-CCCCEEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCeEEEEEe
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLR--G-HTADVVDLNWSPDDSILASGSLD--------NTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~--~-h~~~V~~l~~spdg~~Lasgs~D--------g~I~vwd~~~~~~~~~l~ 164 (689)
.++. ++.+.... . ......++++.++|++.++.... |.|..++.. ++......
T Consensus 68 ~~g~---------------~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~ 131 (246)
T PF08450_consen 68 DTGK---------------VTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD 131 (246)
T ss_dssp TTTE---------------EEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred CCCc---------------EEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence 7762 12333332 1 34568999999999977776543 568888887 55444443
Q ss_pred cCCCCeEEEEEccCCCEEE-EEeCCCeEEEEECCCCcc-eeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 GHSSLVKGVAWDPIGSFIA-SQSDDKTVIIWRTSDWSL-AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~la-s~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.-....+|+|+|+++.|+ +-+..+.|..|++..... +.....-............+++..+|+..++... ...
T Consensus 132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~ 206 (246)
T PF08450_consen 132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGR 206 (246)
T ss_dssp -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTE
T ss_pred -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCE
Confidence 356678999999998765 556778899998864322 1111100000011124678999999988777543 233
Q ss_pred cceeecC-CceeeeeecCCCCCEEEEEEc
Q 040062 243 APVLERG-EWAATFDFLGHNAPIIVVKFN 270 (689)
Q Consensus 243 ~~i~~~~-~~~~~~~l~~h~~~v~~v~fs 270 (689)
+..++.. .....+.+. ...+++++|.
T Consensus 207 I~~~~p~G~~~~~i~~p--~~~~t~~~fg 233 (246)
T PF08450_consen 207 IVVFDPDGKLLREIELP--VPRPTNCAFG 233 (246)
T ss_dssp EEEEETTSCEEEEEE-S--SSSEEEEEEE
T ss_pred EEEECCCccEEEEEcCC--CCCEEEEEEE
Confidence 4444433 333333333 3478888884
No 306
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.49 E-value=2.3e-05 Score=76.68 Aligned_cols=167 Identities=10% Similarity=0.138 Sum_probs=110.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-------CCCCcEEEEEEcCCC------CEEEE
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-------DHFGSVNCVRWAKHG------RYIAS 83 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~fspdg------~~Las 83 (689)
.-++||||+.+||.+...|+|++||+.. ..+..+. .-...|..+.|.+.. ..|+.
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g------------~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlv 114 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG------------SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLV 114 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc------------ceeEEcCcccccCCccccceeeeEeeccccccccceeEEE
Confidence 5689999999999999999999999874 2222221 123567777776521 24556
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCC-----------CeE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR---GHTADVVDLNWSPDDSILASGSLD-----------NTI 149 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~Lasgs~D-----------g~I 149 (689)
-..+|.++-|-+..+. ...++....+. .+...|.++.|+|..++|++|+.. .-+
T Consensus 115 i~Y~G~L~Sy~vs~gt------------~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GL 182 (282)
T PF15492_consen 115 INYRGQLRSYLVSVGT------------NQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGL 182 (282)
T ss_pred EeccceeeeEEEEccc------------CCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCc
Confidence 6677888777764321 01112333322 246789999999998888877621 136
Q ss_pred EEEEcCCCeEEE--------------------------EE---ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 040062 150 HIWNMSTGICTA--------------------------VL---RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200 (689)
Q Consensus 150 ~vwd~~~~~~~~--------------------------~l---~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~ 200 (689)
..|.+-++.+.. .+ ......|..|..+|||.+|++...+|.|.+|++.+-.
T Consensus 183 taWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 183 TAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred eEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcch
Confidence 667543221100 00 1235778999999999999999999999999998766
Q ss_pred ceeeccC
Q 040062 201 LAHRTDG 207 (689)
Q Consensus 201 ~~~~~~~ 207 (689)
+......
T Consensus 263 ~~~~W~~ 269 (282)
T PF15492_consen 263 LQRSWKQ 269 (282)
T ss_pred hhcccch
Confidence 6655543
No 307
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.47 E-value=1.2e-07 Score=103.58 Aligned_cols=226 Identities=18% Similarity=0.200 Sum_probs=153.9
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+..++|+.|....+|++|+-+.++|+.|+..|.|++|++.+| .......+|...|+-+.-+.
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG-----------------~~e~s~ncH~SavT~vePs~ 1153 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG-----------------SMEESVNCHQSAVTLVEPSV 1153 (1516)
T ss_pred cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCc-----------------cccccccccccccccccccC
Confidence 5667788899999999999999999999999999999999998 45566778999999999999
Q ss_pred CCCEEEEEeCCC--eEEEEEcCC-CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 136 DDSILASGSLDN--TIHIWNMST-GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 136 dg~~Lasgs~Dg--~I~vwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
||..+++.+.-. -..+|++.+ +.....+. .-.++.|+....+-+.|.......+||+.+.....++-......
T Consensus 1154 dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1154 DGSTQLTSSSSSSPLSALWDASSTGGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred CcceeeeeccccCchHHHhccccccCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhh
Confidence 999776655433 477899864 34444443 33577888765444455554578999999988877743322111
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
...-....|+|+...|+--+ .+|+.+.......|.... ....-.|+|+
T Consensus 1230 --~y~~n~a~FsP~D~LIlndG---------vLWDvR~~~aIh~FD~ft-~~~~G~FHP~-------------------- 1277 (1516)
T KOG1832|consen 1230 --SYSNNLAHFSPCDTLILNDG---------VLWDVRIPEAIHRFDQFT-DYGGGGFHPS-------------------- 1277 (1516)
T ss_pred --hhhccccccCCCcceEeeCc---------eeeeeccHHHHhhhhhhe-ecccccccCC--------------------
Confidence 11125678999998886432 266665544433332211 1112234444
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
+.-++.-+ .|||+++-+.+...... .-..+.|...|..++..
T Consensus 1278 -------------g~eVIINS-----EIwD~RTF~lLh~VP~L---dqc~VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1278 -------------GNEVIINS-----EIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVMYAM 1319 (1516)
T ss_pred -------------CceEEeec-----hhhhhHHHHHHhcCccc---cceEEEeccCccchhhh
Confidence 46666655 59999998877765532 23567888888766643
No 308
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.47 E-value=4.5e-05 Score=76.26 Aligned_cols=143 Identities=13% Similarity=0.076 Sum_probs=92.7
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCC
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDH--FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
+|.|..||..+ ++.+....-- .....+. ..+++.++++++.++.+..||..++
T Consensus 2 ~g~l~~~d~~t-----------G~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG------------- 56 (238)
T PF13360_consen 2 DGTLSALDPRT-----------GKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTG------------- 56 (238)
T ss_dssp TSEEEEEETTT-----------TEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTS-------------
T ss_pred CCEEEEEECCC-----------CCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCC-------------
Confidence 67889999876 6666665421 1222222 2235667777789999999999888
Q ss_pred cccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE-ecCC---CCeEEEEEccCCCEEEEEeC
Q 040062 112 IENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL-RGHS---SLVKGVAWDPIGSFIASQSD 187 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l-~~h~---~~V~~l~~spdg~~las~s~ 187 (689)
+.+..+.. ...+.... ..++..++++..++.|+.+|..+|+.+... .... .....+....++..++.+..
T Consensus 57 ----~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (238)
T PF13360_consen 57 ----KVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS 130 (238)
T ss_dssp ----EEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET
T ss_pred ----CEEEEeec-ccccccee-eecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec
Confidence 44444432 11111111 123556777778899999999999999884 4321 11223333344888888988
Q ss_pred CCeEEEEECCCCcceeeccC
Q 040062 188 DKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 188 Dg~I~iwd~~~~~~~~~~~~ 207 (689)
++.|..+|.++++.+.....
T Consensus 131 ~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 131 SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp CSEEEEEETTTTEEEEEEES
T ss_pred cCcEEEEecCCCcEEEEeec
Confidence 99999999999998777654
No 309
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.45 E-value=0.00016 Score=77.19 Aligned_cols=319 Identities=14% Similarity=0.208 Sum_probs=150.5
Q ss_pred cCCCCEEEEEe---------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 22 QPGALRFATGG---------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 22 spdg~~Latgs---------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
|||+++++... ..+.+.|||+++ ..+..+......+....|||+|++||... ++.|.+
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~------------~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~ 67 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIET------------GEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYL 67 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTT------------TEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCC------------CceEECcCCccccccceeecCCCeeEEEe-cCceEE
Confidence 68898888742 247789999986 33333333366788999999999999886 578999
Q ss_pred EEcCCCCCccccCCCCCCCc----ccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEcCCCeEEEEEecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDI----ENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-NTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~----~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g~I~vwd~~~~~~~~~l~~h~ 167 (689)
+++.++... .+.......+ ..|...... -..-..+-||||+++|+....| ..|..+.+. .+....
T Consensus 68 ~~~~~~~~~-~lT~dg~~~i~nG~~dwvyeEEv---~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~------~~~~~~ 137 (353)
T PF00930_consen 68 RDLATGQET-QLTTDGEPGIYNGVPDWVYEEEV---FDRRSAVWWSPDSKYLAFLRFDEREVPEYPLP------DYSPPD 137 (353)
T ss_dssp ESSTTSEEE-ESES--TTTEEESB--HHHHHHT---SSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEE------EESSST
T ss_pred EECCCCCeE-EeccccceeEEcCccceeccccc---cccccceEECCCCCEEEEEEECCcCCceEEee------ccCCcc
Confidence 988766211 1111111100 001000000 1123568899999988887644 334433321 111111
Q ss_pred ---CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe-cCCCCCcccc
Q 040062 168 ---SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT-HGFQKPRHSA 243 (689)
Q Consensus 168 ---~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~~~~~~~~~ 243 (689)
-.+..+.+---|.-... -.+.|+|+.+++.. .+...........++..+.|++++..++.. .........+
T Consensus 138 ~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~-~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l 212 (353)
T PF00930_consen 138 SQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTT-ELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDL 212 (353)
T ss_dssp ESS-EEEEEE--BTTS---E----EEEEEEESSSTCCC-EE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEE
T ss_pred ccCCcccccccCCCCCcCCc----eEEEEEECCCCcEE-EeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEE
Confidence 13344444323322211 15778899777654 222221112335678999999999944443 2211222222
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE--
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW-- 321 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw-- 321 (689)
.+.+.........+ .- ....|................+|.....||.-+||
T Consensus 213 ~~~d~~tg~~~~~~----------~e-----------------~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~ 265 (353)
T PF00930_consen 213 VLCDASTGETRVVL----------EE-----------------TSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLY 265 (353)
T ss_dssp EEEEECTTTCEEEE----------EE-----------------ESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEE
T ss_pred EEEECCCCceeEEE----------Ee-----------------cCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEE
Confidence 22222221111111 00 01111110000000012234666666688765554
Q ss_pred eCCCCCceEEecccCCCCeEE-EEEccCCCeEEE-EeCC--CcEEEEEeecc--ccccccChHHHHHHHHhccCCccCce
Q 040062 322 TTASPRPLFVAKHFFTQSVVD-LSWSPDGYSLFA-CSLD--GTVANFHFEVK--ELGHRLSDAELDELKRSRYGDVRGRL 395 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~-l~~spdg~~L~s-gs~D--G~I~vwd~~~~--~l~~~l~~~~~~~~~~~~~g~~~~~I 395 (689)
+...+... .+. ...-.|.. +.|+++++.|+. +..+ +.-.+|.+.-. .....++ ...+.|
T Consensus 266 ~~~~~~~~-~lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT---------~~~~~~---- 330 (353)
T PF00930_consen 266 DLDGGKPR-QLT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLT---------CEDGDH---- 330 (353)
T ss_dssp ETTSSEEE-ESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESS---------TTSSTT----
T ss_pred ccccccee-ccc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEecc---------CCCCCc----
Confidence 55444432 222 22445644 778888776654 4442 34455554433 2222222 112212
Q ss_pred eeeecCchhhhhHhh
Q 040062 396 ANLAETPAQLLLEAA 410 (689)
Q Consensus 396 ~~l~~Spdg~~Las~ 410 (689)
..+.|||||++++-.
T Consensus 331 ~~~~~Spdg~y~v~~ 345 (353)
T PF00930_consen 331 YSASFSPDGKYYVDT 345 (353)
T ss_dssp EEEEE-TTSSEEEEE
T ss_pred eEEEECCCCCEEEEE
Confidence 689999999888754
No 310
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.45 E-value=6.5e-07 Score=61.77 Aligned_cols=38 Identities=34% Similarity=0.713 Sum_probs=36.4
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
+++.++.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 57889999999999999999999999999999999997
No 311
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.2e-06 Score=89.66 Aligned_cols=250 Identities=16% Similarity=0.150 Sum_probs=165.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
|...|+.+.-. ..+++++++.||.++.|.-..-.. -+.+..+..|-..|..++.+.++..+.+++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isG--------------vEfVKhFraHL~~I~sl~~S~dg~L~~Sv~ 72 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISG--------------VEFVKHFRAHLGVILSLAVSYDGWLFRSVE 72 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccc--------------eeehhhhHHHHHHHHhhhccccceeEeecc
Confidence 77777776554 467999999999999997654211 156677788999999999999999999977
Q ss_pred C-CCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc-CC---CEEEE-EeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 145 L-DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IG---SFIAS-QSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 145 ~-Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg---~~las-~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
. |..++++|+.+...+..++-.. ....+.|.. .| ..|+. .-.++.+.++|-....+...+
T Consensus 73 d~Dhs~KvfDvEn~DminmiKL~~-lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~------------- 138 (558)
T KOG0882|consen 73 DPDHSVKVFDVENFDMINMIKLVD-LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY------------- 138 (558)
T ss_pred CcccceeEEEeeccchhhhccccc-CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccce-------------
Confidence 7 9999999998876654444221 122233332 22 13333 335778888886432211100
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
.-.-|..+|.++.+++.+
T Consensus 139 -------------------------------------fkklH~sPV~~i~y~qa~------------------------- 156 (558)
T KOG0882|consen 139 -------------------------------------FKKLHFSPVKKIRYNQAG------------------------- 156 (558)
T ss_pred -------------------------------------ecccccCceEEEEeeccc-------------------------
Confidence 112377888888888876
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCC------CCce---------EEecccCCCCeEEEEEccCCCeEEEEeCCCcEEE
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTAS------PRPL---------FVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVAN 363 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~------~~~~---------~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~v 363 (689)
+.+++....|.|.-|.... .+.. ..+.. ......++.|+|+|..+.+-+.|..|++
T Consensus 157 --------Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K-~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 157 --------DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPK-AKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred --------cceeeccccceeEeecCCCcccCccccccccccccchhhcccc-cccCccceEEccccCcccccCcccEEEE
Confidence 6777777788888898762 1111 11111 2456789999999999999999999999
Q ss_pred EEeeccccccccChHHHHHHH--HhccC------------------CccCceeeeecCchhhhhHhhcccc
Q 040062 364 FHFEVKELGHRLSDAELDELK--RSRYG------------------DVRGRLANLAETPAQLLLEAASAKE 414 (689)
Q Consensus 364 wd~~~~~l~~~l~~~~~~~~~--~~~~g------------------~~~~~I~~l~~Spdg~~Las~s~DG 414 (689)
+++.++++.+.+.+....... +..|+ ........++|...|.+|..++-=|
T Consensus 228 F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g 298 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG 298 (558)
T ss_pred EEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee
Confidence 999999987766543332211 11111 0111346677888888888776433
No 312
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.44 E-value=2.7e-07 Score=101.00 Aligned_cols=273 Identities=13% Similarity=0.139 Sum_probs=175.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC-
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ- 88 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg- 88 (689)
.|. ..-+|++|+-+.++|++|+..|.|++|++.+ +........|...|+-+.=+.+|..+++.+.-.
T Consensus 1099 d~~-~~fTc~afs~~~~hL~vG~~~Geik~~nv~s-----------G~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~ 1166 (1516)
T KOG1832|consen 1099 DET-ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSS-----------GSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSS 1166 (1516)
T ss_pred ccc-cceeeEEeecCCceEEeeeccceEEEEEccC-----------ccccccccccccccccccccCCcceeeeeccccC
Confidence 344 5789999999999999999999999999997 777888899999999999999998776655432
Q ss_pred -eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-c-
Q 040062 89 -VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR-G- 165 (689)
Q Consensus 89 -~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~-~- 165 (689)
...+|++..-. ...+.+ ..-.++.|+.....-+.|.......+||+.++..+.++- +
T Consensus 1167 PlsaLW~~~s~~----------------~~~Hsf----~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~ 1226 (1516)
T KOG1832|consen 1167 PLSALWDASSTG----------------GPRHSF----DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDT 1226 (1516)
T ss_pred chHHHhcccccc----------------Cccccc----cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcc
Confidence 46789886521 122222 235677888665555555555789999999987766532 1
Q ss_pred --CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 166 --HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 166 --h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
.+..-.+..|+|+..+++ .|| .+||++..+.++.+..-.. .-.-.|+|.|..++..+.
T Consensus 1227 ~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~-------~~~G~FHP~g~eVIINSE-------- 1286 (1516)
T KOG1832|consen 1227 VTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD-------YGGGGFHPSGNEVIINSE-------- 1286 (1516)
T ss_pred hhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee-------cccccccCCCceEEeech--------
Confidence 122236788999988776 355 5899998887777754321 223468999999887654
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
+|+.+++....... .-.-..+.|+..|..++...........+.... -+..++ ...+-||.
T Consensus 1287 -IwD~RTF~lLh~VP--~Ldqc~VtFNstG~VmYa~~~~~d~~sdvh~~r----------~k~p~f------SSFRTf~a 1347 (1516)
T KOG1832|consen 1287 -IWDMRTFKLLHSVP--SLDQCAVTFNSTGDVMYAMLNIEDVMSDVHTRR----------VKHPLF------SSFRTFDA 1347 (1516)
T ss_pred -hhhhHHHHHHhcCc--cccceEEEeccCccchhhhhhhhhhhhhhcccc----------cccchh------hhhccccc
Confidence 67766654432221 122355777777644443221110000000000 000111 12355666
Q ss_pred CCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
..-..+.++.. ...+.++|-+|...+|.+-
T Consensus 1348 ~dYs~iaTi~v--~R~~~Dlct~~~D~~l~vI 1377 (1516)
T KOG1832|consen 1348 IDYSDIATIPV--DRCLLDLCTEPTDSFLGVI 1377 (1516)
T ss_pred cccccceeeec--ccchhhhhcCCccceEEEE
Confidence 66666666654 5667788888877776654
No 313
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.42 E-value=4.7e-05 Score=82.68 Aligned_cols=159 Identities=13% Similarity=0.149 Sum_probs=106.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--CCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--DHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.|.=-+++-.+++++.|+.-|.+++|+-.. .....+. +..+.+..+..+++..++|.|+..|.|.+
T Consensus 35 ~v~lTc~dst~~~l~~GsS~G~lyl~~R~~------------~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAMGSSAGSVYLYNRHT------------GEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV 102 (726)
T ss_pred eEEEEEeecCCceEEEecccceEEEEecCc------------hhhhcccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence 566667778899999999999999999775 2222222 24455666778888889999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEE-EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC----eEEEEEecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG----ICTAVLRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~----~~~~~l~~h~ 167 (689)
+.+........ ..+. .-..|...|++++|++|+..|++|...|.|.+-.+.+. .....+-...
T Consensus 103 ~ql~~~~p~~~------------~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 103 FQLNKELPRDL------------DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred ehhhccCCCcc------------eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 99877421100 1111 11237899999999999999999999999999888762 1122222345
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~ 200 (689)
+.|..|.+. ++.+|++... ...+++++...
T Consensus 171 s~IVQlD~~-q~~LLVStl~--r~~Lc~tE~et 200 (726)
T KOG3621|consen 171 SEIVQLDYL-QSYLLVSTLT--RCILCQTEAET 200 (726)
T ss_pred cceEEeecc-cceehHhhhh--hhheeecchhH
Confidence 667666654 3334443332 24456655433
No 314
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.40 E-value=0.0001 Score=79.85 Aligned_cols=277 Identities=9% Similarity=-0.025 Sum_probs=144.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC--CcEE-----EEEEcC--CCCEEEEEeCCCeEEEEE
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF--GSVN-----CVRWAK--HGRYIASGSDDQVILIHE 94 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~-----~v~fsp--dg~~Lasgs~Dg~I~iwd 94 (689)
.+.++++++.+|.|.-+|.++ ++.+-...... +.+. .+.-.| ++..++.++.++.+..+|
T Consensus 68 ~~~~vy~~~~~g~l~ald~~t-----------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald 136 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADT-----------GKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALN 136 (394)
T ss_pred ECCEEEEECCCCeEEEEECCC-----------CcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEE
Confidence 355777788889999999886 44443332111 0000 000011 355677788899999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE-
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD-LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG- 172 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~- 172 (689)
.++++..-... .. ..+.+ ... .+..++.+..++.|..+|..+|+.+..+......+..
T Consensus 137 ~~tG~~~W~~~-----------------~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~ 196 (394)
T PRK11138 137 AEDGEVAWQTK-----------------VA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR 196 (394)
T ss_pred CCCCCCccccc-----------------CC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence 99885332211 11 11111 111 1346667788999999999999998887642111100
Q ss_pred EEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC-CcccEEEEEEcC--CCCeEEEecCCCCCccccceee
Q 040062 173 VAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL-GSTFFRRLGWSP--CGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 173 l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~i~~l~~sp--dg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..-+| .+..++.++.++.+..+|..+++............. .......+.-+| .+..+++.... ..+..++
T Consensus 197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~----g~l~ald 272 (394)
T PRK11138 197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN----GNLVALD 272 (394)
T ss_pred CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC----CeEEEEE
Confidence 00111 234566777889999999999887765432111000 000000001111 12222222211 1111222
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
..+.+......- .... .....+..++.++.+|.+..+|..+++
T Consensus 273 ~~tG~~~W~~~~--~~~~-----------------------------------~~~~~~~~vy~~~~~g~l~ald~~tG~ 315 (394)
T PRK11138 273 LRSGQIVWKREY--GSVN-----------------------------------DFAVDGGRIYLVDQNDRVYALDTRGGV 315 (394)
T ss_pred CCCCCEEEeecC--CCcc-----------------------------------CcEEECCEEEEEcCCCeEEEEECCCCc
Confidence 211111100000 0000 000124577778899999999999998
Q ss_pred ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 328 PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
.+............+... .+.+|++++.||.|+++|..++++...
T Consensus 316 ~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 316 ELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEE
Confidence 776543211111222222 256788899999999999999887643
No 315
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.40 E-value=1.3e-06 Score=60.15 Aligned_cols=39 Identities=46% Similarity=0.889 Sum_probs=37.3
Q ss_pred ceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 115 WKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWN 153 (689)
Q Consensus 115 ~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd 153 (689)
|+.+..+.+|...|.+|+|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 478899999999999999999999999999999999997
No 316
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.37 E-value=0.0001 Score=74.42 Aligned_cols=188 Identities=12% Similarity=0.091 Sum_probs=120.0
Q ss_pred EEEcCCCCEEEEEe-----CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-------
Q 040062 19 IDVQPGALRFATGG-----GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD------- 86 (689)
Q Consensus 19 i~~spdg~~Latgs-----~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~------- 86 (689)
-.||+||++|++.- ..|.|-|||... ..+.+..+..|.-.-..+.+.|||+.|+.+-.
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~----------~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAAR----------GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPD 125 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcC----------CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcc
Confidence 37999999999863 358999999983 26777788877766778899999988887632
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEE--E--ecCCCCEEEEEEcCCCCEEEEEeCCC-------eEEEEEcC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT--L--RGHTADVVDLNWSPDDSILASGSLDN-------TIHIWNMS 155 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~--l--~~h~~~V~~l~~spdg~~Lasgs~Dg-------~I~vwd~~ 155 (689)
.|..++ ++++......+- +..+-+.+.. + ..|...|..|++..+|..++..-..+ -|-+++..
T Consensus 126 ~GR~kL-Nl~tM~psL~~l-----d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g 199 (305)
T PF07433_consen 126 SGRAKL-NLDTMQPSLVYL-----DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG 199 (305)
T ss_pred cCceec-ChhhcCCceEEE-----ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC
Confidence 122221 222221111100 0011123333 4 34778899999999998776665444 24444432
Q ss_pred CCeEEEEEe-------cCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 156 TGICTAVLR-------GHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 156 ~~~~~~~l~-------~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
+.+..+. .....+-+|+++.++.++++.+ ..+.+.+||..++..+....... +..++-.+++
T Consensus 200 --~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D--------~cGva~~~~~ 269 (305)
T PF07433_consen 200 --GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD--------ACGVAPTDDG 269 (305)
T ss_pred --CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc--------eeeeeecCCc
Confidence 2233222 2457899999999998876555 67789999999999887765432 4556666666
Q ss_pred CeEEEe
Q 040062 228 HFITTT 233 (689)
Q Consensus 228 ~~l~~~ 233 (689)
++++.
T Consensus 270 -f~~ss 274 (305)
T PF07433_consen 270 -FLVSS 274 (305)
T ss_pred -eEEeC
Confidence 44443
No 317
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.37 E-value=0.00027 Score=72.26 Aligned_cols=280 Identities=13% Similarity=0.133 Sum_probs=152.3
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC----------CCeEEEEEcCCCCCcccc
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD----------DQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----------Dg~I~iwdl~~~~~~~~~ 104 (689)
+.++|+|.+. ++.+-.+..- ..-.+..+|+++.+.+++. .-.|.+||..+-.
T Consensus 17 ~rv~viD~d~-----------~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~----- 78 (342)
T PF06433_consen 17 SRVYVIDADS-----------GKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLS----- 78 (342)
T ss_dssp EEEEEEETTT-----------TEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTE-----
T ss_pred ceEEEEECCC-----------CcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCc-----
Confidence 4789999876 6666666432 2234668999998886542 3469999998863
Q ss_pred CCCCCCCcccceEEEEEecC---C----CCEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 105 GSGEPPDIENWKVAMTLRGH---T----ADVVDLNWSPDDSILASGSL--DNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h---~----~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
....+.-. . .....++++.|++++++... -..|.|-|+..++.+..+.-.. ...+
T Consensus 79 ------------~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~i-- 142 (342)
T PF06433_consen 79 ------------PTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLI-- 142 (342)
T ss_dssp ------------EEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEE--
T ss_pred ------------ccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEE--
Confidence 22221111 1 12234678889998877643 4579999999999988876332 2222
Q ss_pred ccC-CCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 176 DPI-GSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 176 spd-g~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
-|. .+-|.+.|.||++.-..+. .++...+....+.. .....+..-.++..+..+
T Consensus 143 yP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~-~~dp~f~~~~~~~~~~~~----------------------- 198 (342)
T PF06433_consen 143 YPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDP-DDDPLFEHPAYSRDGGRL----------------------- 198 (342)
T ss_dssp EEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESST-TTS-B-S--EEETTTTEE-----------------------
T ss_pred EecCCCceEEEecCCceEEEEECCCCCEeEeeccccCC-CCcccccccceECCCCeE-----------------------
Confidence 232 3567788899999999987 44443222111111 001111122222211111
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccc-cccccccccccCCcccccCccCCCCcEEEEE--eCCC-------cEEEEeC
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASS-QEVKAAPVGWTNGTSKIGGKESQPYNVIAIG--SQDR-------TITVWTT 323 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg--s~Dg-------~I~iwd~ 323 (689)
-|....+.|..+.++.+.......-. .........|.++.......-...+.+++.- +.++ .|.+||+
T Consensus 199 --~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~ 276 (342)
T PF06433_consen 199 --YFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDL 276 (342)
T ss_dssp --EEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEET
T ss_pred --EEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEEC
Confidence 12223455555555555422211000 0001122355555443322222233333321 1122 3888899
Q ss_pred CCCCceEEecccCCCCeEEEEEccCCC-eEEEEe-CCCcEEEEEeeccccccccC
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACS-LDGTVANFHFEVKELGHRLS 376 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~DG~I~vwd~~~~~l~~~l~ 376 (689)
.+++.+..+.. ...+.+|..+.|.+ +|++.+ .++.+.+||..++++.+.+.
T Consensus 277 ~t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 277 KTHKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp TTTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred CCCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 99999988875 34588999999876 666554 57899999999998877653
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.33 E-value=0.0003 Score=76.31 Aligned_cols=263 Identities=11% Similarity=0.021 Sum_probs=138.0
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNC-VRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
+.+++.++.+|.++-+|.++ ++.+.+..... .+.+ ... .+..++.++.++.+..+|.++++..-.
T Consensus 120 ~~~v~v~~~~g~l~ald~~t-----------G~~~W~~~~~~-~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~ 185 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAED-----------GEVAWQTKVAG-EALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWT 185 (394)
T ss_pred CCEEEEEcCCCEEEEEECCC-----------CCCcccccCCC-ceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeee
Confidence 45677788889999999887 44444443222 2211 111 244666778889999999998853222
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCC-------CeEEEEEc
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSS-------LVKGVAWD 176 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~-------~V~~l~~s 176 (689)
+....+ ...+.+...++ . .+..++.++.++.+..+|..+++.+........ ....+..+
T Consensus 186 ~~~~~~--------~~~~~~~~sP~----v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 186 VNLDVP--------SLTLRGESAPA----T--AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred ecCCCC--------cccccCCCCCE----E--ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 111000 00001111111 1 123566777889999999999887665432110 01111112
Q ss_pred c--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 177 P--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 177 p--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
| .+..++.++.+|.+..+|..+++.+.+..... ...+. ..+..++..... ..+..++..+....
T Consensus 252 P~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~--------~~~~~--~~~~~vy~~~~~----g~l~ald~~tG~~~ 317 (394)
T PRK11138 252 PVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS--------VNDFA--VDGGRIYLVDQN----DRVYALDTRGGVEL 317 (394)
T ss_pred cEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC--------ccCcE--EECCEEEEEcCC----CeEEEEECCCCcEE
Confidence 2 35567777789999999999988776543211 00111 123333332221 11222222111111
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH 334 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 334 (689)
.......... .-+| .-.+..|+.++.||.|.++|..+++.+.....
T Consensus 318 W~~~~~~~~~---~~sp-------------------------------~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~ 363 (394)
T PRK11138 318 WSQSDLLHRL---LTAP-------------------------------VLYNGYLVVGDSEGYLHWINREDGRFVAQQKV 363 (394)
T ss_pred EcccccCCCc---ccCC-------------------------------EEECCEEEEEeCCCEEEEEECCCCCEEEEEEc
Confidence 0000000000 0000 00236788899999999999999998876654
Q ss_pred cCCCCeE-EEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 335 FFTQSVV-DLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 335 ~h~~~V~-~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
. ...+. ...+ .+..|++++.||.|+.++.
T Consensus 364 ~-~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 364 D-SSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred C-CCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 2 22222 2222 2457889999999988764
No 319
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.31 E-value=1.3e-06 Score=86.72 Aligned_cols=133 Identities=13% Similarity=0.152 Sum_probs=104.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~i 92 (689)
+.|+++.|...++++..|+.+|.|..+|+... ....+.....+ .|...|+++..-. ++++|.+.+.+|.|.+
T Consensus 253 sDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r------nqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikL 325 (425)
T KOG2695|consen 253 SDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR------NQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKL 325 (425)
T ss_pred hhHHHHHhcccCCeeEecccCCcEEEEEeeec------ccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeE
Confidence 57999999999999999999999999999862 11223444444 3889999998877 7889999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE--cCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW--SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~--spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
||++--+.. +-+..+.+|.+.-.-+-+ .+....+++++.|...+||.++.+..+.++....
T Consensus 326 yD~R~~K~~--------------~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 326 YDLRATKCK--------------KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred eeehhhhcc--------------cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 999865211 347788888765555544 3455688889999999999999999998887443
No 320
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=1.7e-05 Score=87.06 Aligned_cols=110 Identities=18% Similarity=0.282 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCEEEEEeC----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 16 IFSIDVQPGALRFATGGG----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 16 I~si~~spdg~~Latgs~----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
-+-..|+|...+||+++- .|.|.||--.. .+..-.+..-| +++++|+|..-.|+.|-.-|.+.
T Consensus 18 sti~SWHPsePlfAVA~fS~er~GSVtIfadtG----------EPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~ 84 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPERGGSVTIFADTG----------EPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSD 84 (1416)
T ss_pred ccccccCCCCceeEEEEecCCCCceEEEEecCC----------CCCccccccee---hhhhccChHHHHHhhccccceeE
Confidence 345679999999999863 58899985332 01111122223 56799999998999999999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
+|...+. +.......|..+|..+.||++|..|+++..-|.|.+|...
T Consensus 85 v~~~~~~-----------------e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 85 VQKTNTT-----------------ETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCc-----------------eeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 9988765 4455556799999999999999999999999999999875
No 321
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.20 E-value=0.00024 Score=78.84 Aligned_cols=217 Identities=13% Similarity=0.142 Sum_probs=138.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc-EEEEEEcCCCCEEEEEeCCC-----
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS-VNCVRWAKHGRYIASGSDDQ----- 88 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~v~fspdg~~Lasgs~Dg----- 88 (689)
.|.| |++.+..++.|+.+|.|.+.+-. .+.++.++.+... |+.+-...+..+|++.+.|+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s------------~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ 92 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSS------------FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPV 92 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEeccc------------ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCce
Confidence 3444 55888999999999999998865 4666788888777 44444444446888877765
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEE--EEEec-----CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC----CC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVA--MTLRG-----HTADVVDLNWSPDDSILASGSLDNTIHIWNMS----TG 157 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~--~~l~~-----h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~----~~ 157 (689)
.++||+++.-.... ++ .++ ..+.. ...++.+++.+.+-+.+|+|-.+|.|.++.-. .+
T Consensus 93 llkiw~lek~~~n~------sP-----~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 93 LLKIWDLEKVDKNN------SP-----QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEEEecccccCCCC------Cc-----ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 48999998653211 01 222 22222 34678999999999999999999999999542 12
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceee-ccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR-TDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
...........+|+++++..+++.++....-..|.+|.+....+... +..+. ....+..+++....++++..
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G------~~lnCss~~~~t~qfIca~~- 234 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNG------ISLNCSSFSDGTYQFICAGS- 234 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCC------ccceeeecCCCCccEEEecC-
Confidence 22333333568999999998887622222234799999974442222 33222 22677777776664444432
Q ss_pred CCCccccceeecCCceeeeeec-CCCCCEEEE
Q 040062 237 QKPRHSAPVLERGEWAATFDFL-GHNAPIIVV 267 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~-~h~~~v~~v 267 (689)
..+.+++......-+.|. +|......+
T Consensus 235 ----e~l~fY~sd~~~~cfaf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 235 ----EFLYFYDSDGRGPCFAFEVGEKKEMLVF 262 (933)
T ss_pred ----ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence 456667666666666666 655444443
No 322
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.07 E-value=0.00055 Score=73.69 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=63.7
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 123 GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 123 ~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.....|.+++++|+...|+.|+.||.|++||...+..... ...-.+..++|+|+|.+|++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 4678899999999999999999999999999877643322 3456678899999999999999999999999853
No 323
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.06 E-value=0.0071 Score=58.58 Aligned_cols=105 Identities=12% Similarity=0.015 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNC-VRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
-|++++.|+..|.+++.+.++ +.+...+... +.|.+ ....+++.++..|+.|++.+..|..+.
T Consensus 62 vgdfVV~GCy~g~lYfl~~~t-----------Gs~~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---- 125 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKT-----------GSQIWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---- 125 (354)
T ss_pred ECCEEEEEEccCcEEEEEecc-----------hhheeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccccc----
Confidence 466789999999999999987 5555555422 22332 335678999999999999999998876
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~ 157 (689)
..+...+........-+..+-...|..+...|.|.--...++
T Consensus 126 -------------~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~ 167 (354)
T KOG4649|consen 126 -------------GCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY 167 (354)
T ss_pred -------------ceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence 344444433333333445553334555555666655555443
No 324
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.05 E-value=7.2e-05 Score=80.28 Aligned_cols=111 Identities=12% Similarity=0.217 Sum_probs=78.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|.|++++|+.++|+.|+.||.|.+||... + +..+..+.-..+.++|+|+|.+|++|+..|.+.+|
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~-----------~--~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~F 326 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTR-----------G--VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCF 326 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCC-----------C--eeeeeeecccceEEEEcCCCcEEEEEcCCceEEEE
Confidence 5899999999999999999999999999875 1 22233344567899999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS 138 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 138 (689)
|+.-+......-..+......... .....+...+..+.|++...
T Consensus 327 D~ALspi~~qLlsEd~~P~~~L~L-s~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 327 DMALSPIKMQLLSEDATPKSTLQL-SKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred EeecCccceeeccccCCCccEEee-ehhccCcchhheeEeccCCC
Confidence 998764332222222211111111 22224566677888885443
No 325
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=5.7e-05 Score=83.06 Aligned_cols=110 Identities=19% Similarity=0.360 Sum_probs=86.0
Q ss_pred EEEEEcCCCCEEEEEeC----CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q 040062 70 NCVRWAKHGRYIASGSD----DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 70 ~~v~fspdg~~Lasgs~----Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~ 145 (689)
+-..|+|...+||.++. .|.|.||- ++|... .-.+. .-.+++++|+|..-.|+.|-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPq---------------r~Vt~---P~hatSLCWHpe~~vLa~gwe 79 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQ---------------RDVTY---PVHATSLCWHPEEFVLAQGWE 79 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCC---------------ccccc---ceehhhhccChHHHHHhhccc
Confidence 34578888888887764 47788873 333110 00111 123567999999989999999
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
-|.+.+|...+.+.-.....|..+|..+.|+++|..++++..-|.|.+|....
T Consensus 80 ~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 80 MGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 99999999988887777778999999999999999999999999999999864
No 326
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=97.99 E-value=0.00012 Score=81.56 Aligned_cols=174 Identities=11% Similarity=0.146 Sum_probs=120.9
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~ 104 (689)
+..++-|+-...+..+|+.. .+..+...-..+.|.-++. ++++|.+|...|+|.+-|..+.
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~-----------~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~------ 207 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNT-----------EKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSF------ 207 (1118)
T ss_pred Ccceeecchhhheeeeeccc-----------ceeeeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcC------
Confidence 44566666666777777775 4444444444445666666 5889999999999999998876
Q ss_pred CCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC---------CCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 105 GSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL---------DNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~---------Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
+.++++..|++.|.++.. .|+.|++|+. |.-|+|||++..+.+.-+.-+.++ .-+.|
T Consensus 208 -----------~~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf 273 (1118)
T KOG1275|consen 208 -----------ETIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRF 273 (1118)
T ss_pred -----------ceeeeeeccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhh
Confidence 789999999999998877 4888999874 557899999988777766655554 56788
Q ss_pred ccC-CCEEEEEeCCCeEEEEECCCCcce--eeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 176 DPI-GSFIASQSDDKTVIIWRTSDWSLA--HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 176 spd-g~~las~s~Dg~I~iwd~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+|. ...+++++..|...+-|..+.... ..... ......+..+.+|+.+..++.+..
T Consensus 274 ~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v----~p~~s~i~~fDiSsn~~alafgd~ 332 (1118)
T KOG1275|consen 274 HPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMV----NPNGSGISAFDISSNGDALAFGDH 332 (1118)
T ss_pred cccccceEEEEecccceeeccccccCCCccceeEE----ccCCCcceeEEecCCCceEEEecc
Confidence 885 357888888899999884332111 00000 011223666777777777776543
No 327
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.99 E-value=0.00073 Score=77.93 Aligned_cols=235 Identities=14% Similarity=0.159 Sum_probs=131.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce
Q 040062 123 GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA 202 (689)
Q Consensus 123 ~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~ 202 (689)
..+..|.++.|..+..-++.+..+|.|.+-|..+......- .-...|.+++|+||+..++..+.++++.+ ...++.++
T Consensus 66 ~gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg-~vd~GI~aaswS~Dee~l~liT~~~tll~-mT~~f~~i 143 (1265)
T KOG1920|consen 66 DGDDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVG-NVDNGISAASWSPDEELLALITGRQTLLF-MTKDFEPI 143 (1265)
T ss_pred CCCcceEEEEEecccceEEEEecCCcEEEEcccccceeeee-eccCceEEEeecCCCcEEEEEeCCcEEEE-Eeccccch
Confidence 34468999999999999999999999999998776543322 24678999999999999999988776654 44455555
Q ss_pred eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 203 HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
.....+... .....+..+.|-...+.+-...+.... .+................-+.+.|--++
T Consensus 144 ~E~~L~~d~-~~~sk~v~VGwGrkeTqfrgs~gr~~~------~~~~~~ek~~~~~~~~~~~~~IsWRgDg--------- 207 (1265)
T KOG1920|consen 144 AEKPLDADD-ERKSKFVNVGWGRKETQFRGSEGRQAA------RQKIEKEKALEQIEQDDHKTSISWRGDG--------- 207 (1265)
T ss_pred hcccccccc-ccccccceecccccceeeecchhhhcc------cccccccccccchhhccCCceEEEccCC---------
Confidence 443331111 111112333333322222211110000 0000000000000011222345554443
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEe----CC-CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE--
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGS----QD-RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC-- 355 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs----~D-g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg-- 355 (689)
.++|+.. .+ +.|+|||.+ +.. ..........-.+++|-|.|..+++-
T Consensus 208 ------------------------~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 208 ------------------------EYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred ------------------------cEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCCeEeeeee
Confidence 6777632 23 789999987 322 21111223334689999999999884
Q ss_pred -eCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 356 -SLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 356 -s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
+.|+.|.+|.-+.-+-+. +. .++......+..++|+.++.+||.-.
T Consensus 262 ~~sd~~IvffErNGL~hg~-f~---------l~~p~de~~ve~L~Wns~sdiLAv~~ 308 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGE-FV---------LPFPLDEKEVEELAWNSNSDILAVVT 308 (1265)
T ss_pred cCCCCcEEEEecCCccccc-cc---------cCCcccccchheeeecCCCCceeeee
Confidence 346679998754322110 00 11222223489999999999999843
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.00036 Score=77.04 Aligned_cols=154 Identities=15% Similarity=0.206 Sum_probs=109.6
Q ss_pred eecCceEEEEEEcCC-------------CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC
Q 040062 10 RHEGMQIFSIDVQPG-------------ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK 76 (689)
Q Consensus 10 ~H~g~~I~si~~spd-------------g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 76 (689)
.|.| .|+-..+.-. |.++++|+.||+|.|-.+-+ .+..+++. ...++.+|+++|
T Consensus 56 tH~g-~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~-----------~~~~~~~d-f~rpiksial~P 122 (846)
T KOG2066|consen 56 THRG-AVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFT-----------DDEITQYD-FKRPIKSIALHP 122 (846)
T ss_pred cccc-eEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccC-----------CccceeEe-cCCcceeEEecc
Confidence 3554 5665555544 99999999999999999886 45555554 456899999999
Q ss_pred C-----CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 77 H-----GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHI 151 (689)
Q Consensus 77 d-----g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~v 151 (689)
+ .+.+++|+.-| +.++...=- .++..+ .+....+.|.++.|. |+++|-++.+| |+|
T Consensus 123 d~~~~~sk~fv~GG~ag-lvL~er~wl--------------gnk~~v-~l~~~eG~I~~i~W~--g~lIAWand~G-v~v 183 (846)
T KOG2066|consen 123 DFSRQQSKQFVSGGMAG-LVLSERNWL--------------GNKDSV-VLSEGEGPIHSIKWR--GNLIAWANDDG-VKV 183 (846)
T ss_pred chhhhhhhheeecCcce-EEEehhhhh--------------cCccce-eeecCccceEEEEec--CcEEEEecCCC-cEE
Confidence 7 56899999988 777653311 111222 455667899999996 88888888666 999
Q ss_pred EEcCCCeEEEEEecCCCCe------EEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 152 WNMSTGICTAVLRGHSSLV------KGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 152 wd~~~~~~~~~l~~h~~~V------~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
||+.+++.+..+......+ ..+.|.++. .|+.|=.| +|+|..++
T Consensus 184 yd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 184 YDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred EeccccceeeccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 9999988887776433332 356777654 45555445 78998887
No 329
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.96 E-value=0.0015 Score=65.30 Aligned_cols=148 Identities=16% Similarity=0.107 Sum_probs=89.5
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
+++.++++++.++.|+.||..+ ++.+..+.. .+.+.... ..++..++.++.++.|..+|..++.
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~t-----------G~~~W~~~~-~~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~--- 97 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKT-----------GKVLWRFDL-PGPISGAP-VVDGGRVYVGTSDGSLYALDAKTGK--- 97 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTT-----------SEEEEEEEC-SSCGGSGE-EEETTEEEEEETTSEEEEEETTTSC---
T ss_pred EeCCEEEEEcCCCEEEEEECCC-----------CCEEEEeec-ccccccee-eecccccccccceeeeEecccCCcc---
Confidence 3566777778999999999987 666666553 22111111 2235566667788899999988884
Q ss_pred ccCCCCCCCcccceEEEEE-ecC---CCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCe--------
Q 040062 103 EFGSGEPPDIENWKVAMTL-RGH---TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLV-------- 170 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l-~~h---~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V-------- 170 (689)
..... ... ......+....++..++++..++.|..+|+.+|+.+..+.......
T Consensus 98 --------------~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 163 (238)
T PF13360_consen 98 --------------VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFS 163 (238)
T ss_dssp --------------EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEET
T ss_pred --------------eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeec
Confidence 33321 111 1112222233347788888889999999999999998887644321
Q ss_pred --EEEEEccCCCEEEEEeCCCeEEEEECCCCcc
Q 040062 171 --KGVAWDPIGSFIASQSDDKTVIIWRTSDWSL 201 (689)
Q Consensus 171 --~~l~~spdg~~las~s~Dg~I~iwd~~~~~~ 201 (689)
.+-....++ .++.++.++.+..+|+.+++.
T Consensus 164 ~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~ 195 (238)
T PF13360_consen 164 DINGSPVISDG-RVYVSSGDGRVVAVDLATGEK 195 (238)
T ss_dssp TEEEEEECCTT-EEEEECCTSSEEEEETTTTEE
T ss_pred ccccceEEECC-EEEEEcCCCeEEEEECCCCCE
Confidence 111122234 666666666433337777653
No 330
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.93 E-value=0.00058 Score=73.81 Aligned_cols=192 Identities=15% Similarity=0.197 Sum_probs=117.0
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEe---CC-CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGG---GD-HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs---~D-g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
.+.+....+..-.|+|+++.++.-. .. ..++++++... ....+..+.++. ..-+|+|||++|+.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g---------~~~~i~~~~g~~---~~P~fspDG~~l~f 254 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTG---------KRPVILNFNGNN---GAPAFSPDGSKLAF 254 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCC---------ccceeeccCCcc---CCccCCCCCCEEEE
Confidence 3445556788888999998766552 22 46899998862 123333344443 45689999998876
Q ss_pred Ee-CCCe--EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-C--eEEEEEcCCC
Q 040062 84 GS-DDQV--ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-N--TIHIWNMSTG 157 (689)
Q Consensus 84 gs-~Dg~--I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g--~I~vwd~~~~ 157 (689)
+. .||. |.++|+.... ...+..-.+.-..=.|+|||++++..+.. | .|.++|++..
T Consensus 255 ~~~rdg~~~iy~~dl~~~~------------------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 255 SSSRDGSPDIYLMDLDGKN------------------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred EECCCCCccEEEEcCCCCc------------------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 54 4665 5555555541 22233222223366799999988776643 3 5777777665
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEEeCC-Ce--EEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSDD-KT--VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
.. ..+......-..-.|+|||++|+..+.. |. |.+.|+.++...+.+..... .....|.++|..+...+
T Consensus 317 ~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~-------~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 317 QV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYL-------NESPSWAPNGRMIMFSS 388 (425)
T ss_pred ce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccccc-------CCCCCcCCCCceEEEec
Confidence 54 3333222222367899999998877743 43 66666665554333333222 34567889999888876
Q ss_pred CCC
Q 040062 235 GFQ 237 (689)
Q Consensus 235 ~~~ 237 (689)
+..
T Consensus 389 ~~~ 391 (425)
T COG0823 389 GQG 391 (425)
T ss_pred cCC
Confidence 644
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00065 Score=69.31 Aligned_cols=84 Identities=21% Similarity=0.303 Sum_probs=72.7
Q ss_pred eEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEE
Q 040062 116 KVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVII 193 (689)
Q Consensus 116 ~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~i 193 (689)
+....+.+|...|.+|+|||... +|..++.+..|.|.|+++...+..+..| ..+++++|+-+. .+|..|..+|.|.|
T Consensus 184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 34456777888999999999887 7889999999999999999999999877 889999999876 57777888999999
Q ss_pred EECCCCc
Q 040062 194 WRTSDWS 200 (689)
Q Consensus 194 wd~~~~~ 200 (689)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998643
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.87 E-value=0.0017 Score=70.43 Aligned_cols=162 Identities=15% Similarity=0.176 Sum_probs=84.5
Q ss_pred eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccc
Q 040062 36 KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW 115 (689)
Q Consensus 36 ~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~ 115 (689)
.|+.+|++.... ........-..+.+....-....+.++|+|++++.+ .||...|+.....
T Consensus 3 ~i~~~~~~~~~~-~~dg~~~~l~~k~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~----------------- 63 (443)
T PF04053_consen 3 EIRTANLKNISE-IKDGERLPLSVKELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW----------------- 63 (443)
T ss_dssp EEEEEE--S------TTS-B----EEEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT-----------------
T ss_pred ceEEEECcCCCc-cCCCceeeEEeccCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC-----------------
Confidence 466666665322 111111122233333344457899999999999985 5677888873322
Q ss_pred eEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 040062 116 KVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195 (689)
Q Consensus 116 ~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd 195 (689)
+... .+.....+|...+ .+|+-...+.|.|+.--+.+....+.. ...+..|-. |.+|...+.+ .|.+||
T Consensus 64 r~k~-----~G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~~~~~If~---G~LL~~~~~~-~i~~yD 132 (443)
T PF04053_consen 64 RNKA-----FGSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEVVKSIKL-PFSVEKIFG---GNLLGVKSSD-FICFYD 132 (443)
T ss_dssp EEEE-----EEE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-TT------SS-EEEEE----SSSEEEEETT-EEEEE-
T ss_pred cccc-----cCceeEEEEecCc-cEEEEECCCeEEEEEcCccccceEEcC-CcccceEEc---CcEEEEECCC-CEEEEE
Confidence 2222 2334567898844 567767688999973222222223331 223444432 8878777765 899999
Q ss_pred CCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 196 TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+.+++.+..+... .+..+.|+++|.+++..+.
T Consensus 133 w~~~~~i~~i~v~--------~vk~V~Ws~~g~~val~t~ 164 (443)
T PF04053_consen 133 WETGKLIRRIDVS--------AVKYVIWSDDGELVALVTK 164 (443)
T ss_dssp TTT--EEEEESS---------E-EEEEE-TTSSEEEEE-S
T ss_pred hhHcceeeEEecC--------CCcEEEEECCCCEEEEEeC
Confidence 9999999988754 1688999999999998854
No 333
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.86 E-value=0.0027 Score=70.08 Aligned_cols=184 Identities=13% Similarity=0.035 Sum_probs=110.7
Q ss_pred EcCCCCEEEE-EeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCcceeeccC
Q 040062 133 WSPDDSILAS-GSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD----KTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 133 ~spdg~~Las-gs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----g~I~iwd~~~~~~~~~~~~ 207 (689)
+++||+.+.. .-..+.+.+.|..+.+....+.... ....+.++++|+++++.+.+ .++..-+..+......+..
T Consensus 200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni 278 (635)
T PRK02888 200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI 278 (635)
T ss_pred cCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch
Confidence 4567765533 3345678888998888877766433 44678999999999888632 2233333322211111111
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC----ceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE----WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~----~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.. .-.+.++|++.... ...+.+++... ......+..-......+.++|++
T Consensus 279 ~~----------iea~vkdGK~~~V~------gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDG---------- 332 (635)
T PRK02888 279 AR----------IEEAVKAGKFKTIG------GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDG---------- 332 (635)
T ss_pred HH----------HHHhhhCCCEEEEC------CCEEEEEECCccccCCcceEEEEECCCCccceEECCCC----------
Confidence 00 01334567666652 13345555554 11222233334555667777775
Q ss_pred cccccccccCCcccccCccCCCCcEEE-EEeCCCcEEEEeCCCCCc------------eEEecccCCCCeEEEEEccCCC
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQDRTITVWTTASPRP------------LFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~Dg~I~iwd~~~~~~------------~~~~~~~h~~~V~~l~~spdg~ 350 (689)
++++ ++..+.++.|+|+.+.+. ...... .......+|+++|.
T Consensus 333 -----------------------kylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~ 387 (635)
T PRK02888 333 -----------------------KYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGN 387 (635)
T ss_pred -----------------------CEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCC
Confidence 5555 455589999999988653 222221 33456789999999
Q ss_pred eEEEEeCCCcEEEEEeec
Q 040062 351 SLFACSLDGTVANFHFEV 368 (689)
Q Consensus 351 ~L~sgs~DG~I~vwd~~~ 368 (689)
...+...|..|..|+++.
T Consensus 388 aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 388 AYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEEeEeecceeEEEehHH
Confidence 888888999999999986
No 334
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.78 E-value=0.0037 Score=67.93 Aligned_cols=141 Identities=22% Similarity=0.258 Sum_probs=82.6
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.....+.++|+|+++++++ ||...|+.... .+... .+.-....|...++ +|+-.....|.|+
T Consensus 33 ~~p~~ls~npngr~v~V~g-~geY~iyt~~~-----------~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~ 94 (443)
T PF04053_consen 33 IYPQSLSHNPNGRFVLVCG-DGEYEIYTALA-----------WRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIY 94 (443)
T ss_dssp S--SEEEE-TTSSEEEEEE-TTEEEEEETTT-----------TEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEE
T ss_pred cCCeeEEECCCCCEEEEEc-CCEEEEEEccC-----------Ccccc-----cCceeEEEEecCcc-EEEEECCCeEEEE
Confidence 4578999999999999954 58888888443 22221 23345688998555 6666668889996
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
.--.+. ....+. ....+..|-. |.+|...+.+ .|.+||+.+++.+..+... .|..+
T Consensus 95 kn~~~~-----------------~~k~i~-~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V 150 (443)
T PF04053_consen 95 KNFKNE-----------------VVKSIK-LPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYV 150 (443)
T ss_dssp ETTEE------------------TT------SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEE
T ss_pred EcCccc-----------------cceEEc-CCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEE
Confidence 322221 101111 1123444433 7777776644 8999999999999999743 38999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECC
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
.|++++++++..+.+ ++.|++.+
T Consensus 151 ~Ws~~g~~val~t~~-~i~il~~~ 173 (443)
T PF04053_consen 151 IWSDDGELVALVTKD-SIYILKYN 173 (443)
T ss_dssp EE-TTSSEEEEE-S--SEEEEEE-
T ss_pred EEECCCCEEEEEeCC-eEEEEEec
Confidence 999999999999876 68887754
No 335
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.77 E-value=0.013 Score=65.25 Aligned_cols=157 Identities=10% Similarity=0.112 Sum_probs=89.6
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC------cEE--EEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG------SVN--CVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~------~V~--~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
+.++++++.++.|+-.|..+ ++.+-++..... .+. .+... ++..++.++.++.|.-+|.+
T Consensus 61 ~g~vy~~~~~g~l~AlD~~t-----------G~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~ 128 (488)
T cd00216 61 DGDMYFTTSHSALFALDAAT-----------GKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAE 128 (488)
T ss_pred CCEEEEeCCCCcEEEEECCC-----------ChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECC
Confidence 34667777789999999887 333333322111 000 11111 22577788889999999999
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEE-EEEEcCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEEecC
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILASGS---------LDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~Lasgs---------~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
+++..-.+...... .....+. ...+. +..++.++ .++.|..+|..+++.+..+...
T Consensus 129 TG~~~W~~~~~~~~------------~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~ 194 (488)
T cd00216 129 TGKQVWKFGNNDQV------------PPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTT 194 (488)
T ss_pred CCCEeeeecCCCCc------------CcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeecc
Confidence 98533222111100 0000010 11111 23344443 4688999999999988877542
Q ss_pred CC--------------------Ce-EEEEEccCCCEEEEEeCCC------------------eEEEEECCCCcceeeccC
Q 040062 167 SS--------------------LV-KGVAWDPIGSFIASQSDDK------------------TVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 167 ~~--------------------~V-~~l~~spdg~~las~s~Dg------------------~I~iwd~~~~~~~~~~~~ 207 (689)
.. .| ...++++.+..++.++.++ .|.-+|..+++....++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~ 274 (488)
T cd00216 195 EPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQT 274 (488)
T ss_pred CCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeC
Confidence 11 01 1234555566777777665 799999999998887653
No 336
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.77 E-value=0.0024 Score=70.51 Aligned_cols=111 Identities=14% Similarity=0.135 Sum_probs=73.4
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeE------------EEEEecCCCCeEEEEEccCCCEEEEEeCCCe
Q 040062 124 HTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGIC------------TAVLRGHSSLVKGVAWDPIGSFIASQSDDKT 190 (689)
Q Consensus 124 h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~------------~~~l~~h~~~V~~l~~spdg~~las~s~Dg~ 190 (689)
-......++++|||+++++++ .+.+|.|.|+.+.+. +.....-.++ ...+|+++|+.+.|..-|..
T Consensus 319 VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 319 VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecce
Confidence 345577899999999877665 588999999987552 3444433333 46789999998888889999
Q ss_pred EEEEECCC----------CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 191 VIIWRTSD----------WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 191 I~iwd~~~----------~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
|..|++.. ...+.++..+...-. ......=.-.+||++|++.+..
T Consensus 398 v~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh-~~~~~g~t~~~dgk~l~~~nk~ 452 (635)
T PRK02888 398 IVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGH-NHASMGETKEADGKWLVSLNKF 452 (635)
T ss_pred eEEEehHHHHHHhccccCCcceecccCCCccce-eeecCCCcCCCCCCEEEEcccc
Confidence 99999875 334444443332200 0000111236899999987653
No 337
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0031 Score=70.41 Aligned_cols=218 Identities=11% Similarity=0.075 Sum_probs=133.5
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC-EEEEEEcCCCCEEEEEeCCC----
Q 040062 73 RWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD-VVDLNWSPDDSILASGSLDN---- 147 (689)
Q Consensus 73 ~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~spdg~~Lasgs~Dg---- 147 (689)
+|++.+..++.|+.+|.|.+++-.- +..+.++.+... |+.|-...+..+|++.+.|.
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s~------------------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np 91 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSSF------------------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNP 91 (933)
T ss_pred EEcCCCceEEEeeccccEEEecccc------------------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCc
Confidence 4788889999999999988876431 344667777777 44444333346888888765
Q ss_pred -eEEEEEcCCC------eEEE--EEec-----CCCCeEEEEEccCCCEEEEEeCCCeEEEEECC---CCcceeeccCccc
Q 040062 148 -TIHIWNMSTG------ICTA--VLRG-----HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS---DWSLAHRTDGHWA 210 (689)
Q Consensus 148 -~I~vwd~~~~------~~~~--~l~~-----h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~---~~~~~~~~~~~~~ 210 (689)
.|+|||++.- +++. .+.. ...++.+++.+.+-+.+++|-.||.|..+.-+ +......+.
T Consensus 92 ~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~---- 167 (933)
T KOG2114|consen 92 VLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYS---- 167 (933)
T ss_pred eEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeee----
Confidence 4899998642 3331 2222 24678899999998999999999999998532 111111111
Q ss_pred ccCCcccEEEEEEcCCCCeE-EEecCCCCCccccceeecCCc-eeeeeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFI-TTTHGFQKPRHSAPVLERGEW-AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l-~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
..+...|+.+.+..+++.+ +++.. ..+.++..... .....+..|...+.|..|++..
T Consensus 168 -~~~~~pITgL~~~~d~~s~lFv~Tt-----~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t--------------- 226 (933)
T KOG2114|consen 168 -HRGKEPITGLALRSDGKSVLFVATT-----EQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT--------------- 226 (933)
T ss_pred -ccCCCCceeeEEecCCceeEEEEec-----ceeEEEEecCCCcceeeeccCCccceeeecCCCC---------------
Confidence 1234458999999998872 22221 12223322211 1223355677788888887663
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
..+++++ +..|.+||.....+.+.+..+|.... -|..-|.+|++.
T Consensus 227 ------------------~qfIca~-~e~l~fY~sd~~~~cfaf~~g~kk~~---~~~~~g~~L~v~ 271 (933)
T KOG2114|consen 227 ------------------YQFICAG-SEFLYFYDSDGRGPCFAFEVGEKKEM---LVFSFGLLLCVT 271 (933)
T ss_pred ------------------ccEEEec-CceEEEEcCCCcceeeeecCCCeEEE---EEEecCEEEEEE
Confidence 2244433 34699999987777777764555432 233335555543
No 338
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.76 E-value=0.022 Score=55.27 Aligned_cols=111 Identities=11% Similarity=0.127 Sum_probs=78.1
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~ 157 (689)
..+++.|+..+.+.--|..+++.. |+.+. ...|.+-+.- -|.+++.|...|.+++.+..+|
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~-------------We~il-----g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tG 83 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI-------------WEAIL-----GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTG 83 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE-------------eehhh-----CceeeeeeEE-ECCEEEEEEccCcEEEEEecch
Confidence 457777888888888888777421 22111 1122222221 3667999999999999999999
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
+....+.....--.....++++..+..++.|++.+..|.++..++.+.+.
T Consensus 84 s~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 84 SQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 88777764332222345678899999999999999999999888887553
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0046 Score=66.30 Aligned_cols=128 Identities=16% Similarity=0.168 Sum_probs=83.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc--ccCCC------------------------CCCCcccceEEEEE
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT--EFGSG------------------------EPPDIENWKVAMTL 121 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~--~~~~~------------------------~~~~~~~~~~~~~l 121 (689)
.|+++.|+++..-|+.|...|.|.||....++... ..... ++.-.+.+.....+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999998899999999999999886653221 00000 00012345566667
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe--c------CCCCeEEEEEcc-----CC---CEEEEE
Q 040062 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR--G------HSSLVKGVAWDP-----IG---SFIASQ 185 (689)
Q Consensus 122 ~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~--~------h~~~V~~l~~sp-----dg---~~las~ 185 (689)
....+.|++++.| |=-+++.|..+|.+.|.|++....+..-. . ....|+++.|.. |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 7778999999998 65699999999999999998887776532 1 235688888863 22 367888
Q ss_pred eCCCeEEEEEC
Q 040062 186 SDDKTVIIWRT 196 (689)
Q Consensus 186 s~Dg~I~iwd~ 196 (689)
...|.+.+|.+
T Consensus 162 Tn~G~v~~fkI 172 (395)
T PF08596_consen 162 TNSGNVLTFKI 172 (395)
T ss_dssp ETTSEEEEEEE
T ss_pred eCCCCEEEEEE
Confidence 88899988876
No 340
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.75 E-value=0.011 Score=58.95 Aligned_cols=198 Identities=13% Similarity=0.203 Sum_probs=110.7
Q ss_pred eEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.+..|+|+|+. .++++....+.|..++.+ ++.++.+.-. .+-.-.|++..++.++++--.++.+.+
T Consensus 23 e~SGLTy~pd~~tLfaV~d~~~~i~els~~------------G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQDEPGEIYELSLD------------GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -EEEEEEETTTTEEEEEETTTTEEEEEETT--------------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred CccccEEcCCCCeEEEEECCCCEEEEEcCC------------CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 59999999975 466777778888888865 4666666433 356788999988888887767899999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEE-EE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---CeEEEE--E--
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAM-TL-RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---GICTAV--L-- 163 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~-~l-~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---~~~~~~--l-- 163 (689)
+++....... +....+... .+ ..+...+-.|+|.+.++.|+.+-...-..+|.+.. ...+.. .
T Consensus 91 ~~~~~~~~~~--------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~ 162 (248)
T PF06977_consen 91 FTIDDDTTSL--------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQD 162 (248)
T ss_dssp EEE----TT----------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HH
T ss_pred EEEecccccc--------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccc
Confidence 9985532110 000001111 11 13556799999999988888887777777776653 222211 1
Q ss_pred ----ecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccc---cCCcccEEEEEEcCCCCeEEEe
Q 040062 164 ----RGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK---SLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 164 ----~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~i~~l~~spdg~~l~~~ 233 (689)
......+.+++++|.. .+++.......|.++| .+++.+..+...... .......-.++|.++|+..++.
T Consensus 163 ~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs 239 (248)
T PF06977_consen 163 LDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS 239 (248)
T ss_dssp HH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred cccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence 1133567899999964 5666677788899999 566665544332211 0112236789999999776664
No 341
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.74 E-value=0.016 Score=61.84 Aligned_cols=278 Identities=10% Similarity=0.106 Sum_probs=132.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCC-CCCCcccceeeeeec-----CC-CCcEEEEEEcCCCCEEEEEeC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKN-FENDESTQRLLATLR-----DH-FGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~-~~~~~~~~~~~~~l~-----~h-~~~V~~v~fspdg~~Lasgs~ 86 (689)
..+....|||+|+++|.... +.|.+++....... ...+. ......-.. .. -+.-..+.|||||++||....
T Consensus 43 ~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~ 120 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF 120 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred cccccceeecCCCeeEEEec-CceEEEECCCCCeEEecccc-ceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence 36888999999999998865 78999987651000 00000 000000000 00 112256889999999987754
Q ss_pred C-CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE--
Q 040062 87 D-QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT--ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA-- 161 (689)
Q Consensus 87 D-g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~-- 161 (689)
| ..|..+.+... ...+. ..+..+.+-.-|..... -.+.|+|+.+++...
T Consensus 121 d~~~v~~~~~~~~----------------------~~~~~~yp~~~~~~YPk~G~~np~----v~l~v~~~~~~~~~~~~ 174 (353)
T PF00930_consen 121 DEREVPEYPLPDY----------------------SPPDSQYPEVESIRYPKAGDPNPR----VSLFVVDLASGKTTELD 174 (353)
T ss_dssp E-TTS-EEEEEEE----------------------SSSTESS-EEEEEE--BTTS---E----EEEEEEESSSTCCCEE-
T ss_pred CCcCCceEEeecc----------------------CCccccCCcccccccCCCCCcCCc----eEEEEEECCCCcEEEee
Confidence 3 44444433211 01110 12334444222222111 247778888776532
Q ss_pred EE---ecCCCCeEEEEEccCCCEEEEE--eCCC---eEEEEECCCCcceeeccCcccccCCcccEEEEEEc-CCCCeEEE
Q 040062 162 VL---RGHSSLVKGVAWDPIGSFIASQ--SDDK---TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS-PCGHFITT 232 (689)
Q Consensus 162 ~l---~~h~~~V~~l~~spdg~~las~--s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~ 232 (689)
.. ..-...+..+.|.++++.|+.. ..+. .+.++|..++............-. .......|. +++..++.
T Consensus 175 ~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv--~~~~~~~~~~~~~~~~l~ 252 (353)
T PF00930_consen 175 PPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWV--DVYDPPHFLGPDGNEFLW 252 (353)
T ss_dssp --HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSS--SSSSEEEE-TTTSSEEEE
T ss_pred eccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcce--eeecccccccCCCCEEEE
Confidence 22 2345678899999999844433 3332 466778877655443322211111 112234444 66665555
Q ss_pred ecCCCCCccccceeecCCceeeeeecCCCCCE-EEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 233 THGFQKPRHSAPVLERGEWAATFDFLGHNAPI-IVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v-~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
.....+ ...+.+++....... .+....-.| ..+.+++.+ +.++++
T Consensus 253 ~s~~~G-~~hly~~~~~~~~~~-~lT~G~~~V~~i~~~d~~~--------------------------------~~iyf~ 298 (353)
T PF00930_consen 253 ISERDG-YRHLYLYDLDGGKPR-QLTSGDWEVTSILGWDEDN--------------------------------NRIYFT 298 (353)
T ss_dssp EEETTS-SEEEEEEETTSSEEE-ESS-SSS-EEEEEEEECTS--------------------------------SEEEEE
T ss_pred EEEcCC-CcEEEEEccccccee-ccccCceeecccceEcCCC--------------------------------CEEEEE
Confidence 444222 344444554443322 233333344 235555543 245555
Q ss_pred EeCC----CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe
Q 040062 312 GSQD----RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS 356 (689)
Q Consensus 312 gs~D----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 356 (689)
+..+ ..|+.-++..+..+..+... ...-..+.|||+|++++..+
T Consensus 299 a~~~~p~~r~lY~v~~~~~~~~~~LT~~-~~~~~~~~~Spdg~y~v~~~ 346 (353)
T PF00930_consen 299 ANGDNPGERHLYRVSLDSGGEPKCLTCE-DGDHYSASFSPDGKYYVDTY 346 (353)
T ss_dssp ESSGGTTSBEEEEEETTETTEEEESSTT-SSTTEEEEE-TTSSEEEEEE
T ss_pred ecCCCCCceEEEEEEeCCCCCeEeccCC-CCCceEEEECCCCCEEEEEE
Confidence 5543 34555566522333333322 22226999999999877643
No 342
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.72 E-value=0.036 Score=61.85 Aligned_cols=170 Identities=11% Similarity=0.100 Sum_probs=91.7
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc--EEEEEEcC--CCCEEEEEe---------CCCeEEE
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS--VNCVRWAK--HGRYIASGS---------DDQVILI 92 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~~v~fsp--dg~~Lasgs---------~Dg~I~i 92 (689)
.+++.++.+|.|+-+|.++ ++.+-.+...... -..+.-+| .+..++.++ .++.+..
T Consensus 111 ~~V~v~~~~g~v~AlD~~T-----------G~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~a 179 (488)
T cd00216 111 RKVFFGTFDGRLVALDAET-----------GKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRA 179 (488)
T ss_pred CeEEEecCCCeEEEEECCC-----------CCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEE
Confidence 5777888899999999887 5555444322110 00111112 123444443 3678888
Q ss_pred EEcCCCCCccccCCCCC--CCcccceEEEEEecCC-CCE-EEEEEcCCCCEEEEEeCCC------------------eEE
Q 040062 93 HEKKPGSGTTEFGSGEP--PDIENWKVAMTLRGHT-ADV-VDLNWSPDDSILASGSLDN------------------TIH 150 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~--~~~~~~~~~~~l~~h~-~~V-~~l~~spdg~~Lasgs~Dg------------------~I~ 150 (689)
+|..+++..-.+..... .....|........+. ..+ ...++.+.+..++.++.++ .|.
T Consensus 180 lD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~ 259 (488)
T cd00216 180 YDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIV 259 (488)
T ss_pred EECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEE
Confidence 99988864433221110 0000010000000011 111 1234444556677776554 799
Q ss_pred EEEcCCCeEEEEEecCCCCeE------EEEEc----cCCC---EEEEEeCCCeEEEEECCCCcceeecc
Q 040062 151 IWNMSTGICTAVLRGHSSLVK------GVAWD----PIGS---FIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 151 vwd~~~~~~~~~l~~h~~~V~------~l~~s----pdg~---~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
-+|..+++.+..++.-..... ...+. -++. .++.++.+|.+...|.++++.+....
T Consensus 260 Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 260 ALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 999999999888752111110 01111 1333 57788889999999999999887754
No 343
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.72 E-value=2.3e-05 Score=83.93 Aligned_cols=159 Identities=16% Similarity=0.284 Sum_probs=108.8
Q ss_pred eEEEEEEcCCC--CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeC----C
Q 040062 15 QIFSIDVQPGA--LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSD----D 87 (689)
Q Consensus 15 ~I~si~~spdg--~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~----D 87 (689)
-+.|++++-+. .++++|..+|.|-+-....... .-.....+|....++++|++ |...||.|-+ |
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hd---------Ss~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnd 128 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHD---------SSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRND 128 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCccc---------ccceecccccccccccccccccHHHHHhhhhhhccc
Confidence 36677665543 5789999999999998875211 11223456778899999998 6677777733 5
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
..+.|||+.+.-. ...+.|.... +.......++|..+.+++.+|.....+.++|++.... ......+
T Consensus 129 s~~~Iwdi~s~lt---------vPke~~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~-~~~svnT 195 (783)
T KOG1008|consen 129 SSLKIWDINSLLT---------VPKESPLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD-SVSSVNT 195 (783)
T ss_pred CCccceecccccC---------CCcccccccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhh-hhhhhhh
Confidence 6799999987621 1222222222 1233455889998888999999989999999974321 1122234
Q ss_pred CCeEEEEEcc-CCCEEEEEeCCCeEEEEEC
Q 040062 168 SLVKGVAWDP-IGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 168 ~~V~~l~~sp-dg~~las~s~Dg~I~iwd~ 196 (689)
..+.++..+| .++|+++-. ||.|.+||.
T Consensus 196 k~vqG~tVdp~~~nY~cs~~-dg~iAiwD~ 224 (783)
T KOG1008|consen 196 KYVQGITVDPFSPNYFCSNS-DGDIAIWDT 224 (783)
T ss_pred hhcccceecCCCCCceeccc-cCceeeccc
Confidence 5677888999 778887766 889999993
No 344
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.70 E-value=0.097 Score=54.93 Aligned_cols=181 Identities=13% Similarity=0.095 Sum_probs=90.0
Q ss_pred EEcCCCCEEEEEeC-CC--eEEEEeCCcCCCCCCCCcccceeeeeecCCCCc-EEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 20 DVQPGALRFATGGG-DH--KVRIWNMKSVGKNFENDESTQRLLATLRDHFGS-VNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 20 ~~spdg~~Latgs~-Dg--~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
+|.+||++|+.++. || .+++.|+.+ ..+.+|..+.+. .....++++++.|+.......|+-.|+
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t------------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL 109 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT------------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDL 109 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-------------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEET
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc------------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEEC
Confidence 57789977776654 54 455556664 445555544322 224567788888877766678888888
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc--CCCCEEEEEe----------------------CCCeEEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PDDSILASGS----------------------LDNTIHI 151 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pdg~~Lasgs----------------------~Dg~I~v 151 (689)
++.. ....+......+-...|. .|+..++-.- ..+.|.-
T Consensus 110 ~T~e-----------------~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~ 172 (386)
T PF14583_consen 110 DTLE-----------------ERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFT 172 (386)
T ss_dssp TT-------------------EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEE
T ss_pred CcCc-----------------EEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEE
Confidence 8862 223333334444445553 3455443321 1235666
Q ss_pred EEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeC---CC-eEEEEECCC-CcceeeccCcccccCCcccEEEEEEcC
Q 040062 152 WNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSD---DK-TVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 152 wd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~---Dg-~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
-|+.+|+....+. ....+..+.|+|.. ..|+-|-+ |. .-|||-+++ +.....+..+. ....+..=.|.+
T Consensus 173 idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~----~~e~~gHEfw~~ 247 (386)
T PF14583_consen 173 IDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRM----EGESVGHEFWVP 247 (386)
T ss_dssp EETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-------TTEEEEEEEE-T
T ss_pred EECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCC----CCcccccccccC
Confidence 7888887666555 55677888999955 45555432 22 236675543 22223332221 123366678999
Q ss_pred CCCeEEEec
Q 040062 226 CGHFITTTH 234 (689)
Q Consensus 226 dg~~l~~~~ 234 (689)
||..|....
T Consensus 248 DG~~i~y~~ 256 (386)
T PF14583_consen 248 DGSTIWYDS 256 (386)
T ss_dssp TSS-EEEEE
T ss_pred CCCEEEEEe
Confidence 998887643
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.65 E-value=0.029 Score=58.71 Aligned_cols=309 Identities=12% Similarity=0.034 Sum_probs=133.9
Q ss_pred cceeeeeecCCCCcEEEE-----EEcCCCCEEEEEeC-CC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-
Q 040062 55 TQRLLATLRDHFGSVNCV-----RWAKHGRYIASGSD-DQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT- 125 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v-----~fspdg~~Lasgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~- 125 (689)
++..+..|..+.+.-..+ +|.++|+.|+.+++ || .+.+.|+.++ .+..|....
T Consensus 19 TG~~VtrLT~~~~~~h~~YF~~~~ft~dG~kllF~s~~dg~~nly~lDL~t~------------------~i~QLTdg~g 80 (386)
T PF14583_consen 19 TGHRVTRLTPPDGHSHRLYFYQNCFTDDGRKLLFASDFDGNRNLYLLDLATG------------------EITQLTDGPG 80 (386)
T ss_dssp T--EEEE-S-TTS-EE---TTS--B-TTS-EEEEEE-TTSS-EEEEEETTT-------------------EEEE---SS-
T ss_pred CCceEEEecCCCCcccceeecCCCcCCCCCEEEEEeccCCCcceEEEEcccC------------------EEEECccCCC
Confidence 355666665544433333 45678876666555 44 5666777765 344444332
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEc--cCCCEEEEEe---CC------------
Q 040062 126 ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD--PIGSFIASQS---DD------------ 188 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~s--pdg~~las~s---~D------------ 188 (689)
.......++++++.|+.......|+-.|+.+.+....+......+-...|. .++..++-.- .|
T Consensus 81 ~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e 160 (386)
T PF14583_consen 81 DNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFRE 160 (386)
T ss_dssp B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHH
T ss_pred CCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHH
Confidence 223356678888888777667799999999998877777777777666774 3555554321 11
Q ss_pred -------CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc-ccceeecCCcee-eeeecC
Q 040062 189 -------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH-SAPVLERGEWAA-TFDFLG 259 (689)
Q Consensus 189 -------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~-~~~i~~~~~~~~-~~~l~~ 259 (689)
..|.-.|+.+++....+.. ..++..+.|||..-.++.-+..+.-.. ..++|-...-.. ...+..
T Consensus 161 ~~~a~p~~~i~~idl~tG~~~~v~~~-------~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~ 233 (386)
T PF14583_consen 161 FYEARPHCRIFTIDLKTGERKVVFED-------TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHR 233 (386)
T ss_dssp HHHC---EEEEEEETTT--EEEEEEE-------SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS-
T ss_pred HHhhCCCceEEEEECCCCceeEEEec-------CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeec
Confidence 2455556666665444432 234778899997654444332222222 224442211100 001111
Q ss_pred C--CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCC
Q 040062 260 H--NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFT 337 (689)
Q Consensus 260 h--~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~ 337 (689)
| ...+.-=-|.+++..+.. ....-++.+..|.-+|..+++...... .
T Consensus 234 ~~~~e~~gHEfw~~DG~~i~y----------------------------~~~~~~~~~~~i~~~d~~t~~~~~~~~---~ 282 (386)
T PF14583_consen 234 RMEGESVGHEFWVPDGSTIWY----------------------------DSYTPGGQDFWIAGYDPDTGERRRLME---M 282 (386)
T ss_dssp --TTEEEEEEEE-TTSS-EEE----------------------------EEEETTT--EEEEEE-TTT--EEEEEE---E
T ss_pred CCCCcccccccccCCCCEEEE----------------------------EeecCCCCceEEEeeCCCCCCceEEEe---C
Confidence 1 112222345555522110 000012224456667777775543322 2
Q ss_pred CCeEEEEEccCCCeEEEEeCCC----------------cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC
Q 040062 338 QSVVDLSWSPDGYSLFACSLDG----------------TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET 401 (689)
Q Consensus 338 ~~V~~l~~spdg~~L~sgs~DG----------------~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S 401 (689)
.....+--++||++++-=+.|. .|++++++.+.... +..... ......++....=-...||
T Consensus 283 p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~-l~~h~~--sw~v~~~~~q~~hPhp~FS 359 (386)
T PF14583_consen 283 PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRK-LARHDT--SWKVLDGDRQVTHPHPSFS 359 (386)
T ss_dssp -SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEE-EEE---------BTTBSSTT----EE-
T ss_pred CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceee-eeeccC--cceeecCCCccCCCCCccC
Confidence 2456777789998776633331 45566666544321 111110 0001111111112567899
Q ss_pred chhhhhHhhc-cccceeeeeee
Q 040062 402 PAQLLLEAAS-AKETTTKKVVS 422 (689)
Q Consensus 402 pdg~~Las~s-~DG~v~~~~~~ 422 (689)
|||++++-.| ..|....+.+.
T Consensus 360 PDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 360 PDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CCCCEEEEECCCCCCccEEEEe
Confidence 9998877544 55655344443
No 346
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.016 Score=57.01 Aligned_cols=242 Identities=12% Similarity=0.109 Sum_probs=135.7
Q ss_pred EEEEEcCC-CCEEEEEeCCCe-EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC--
Q 040062 70 NCVRWAKH-GRYIASGSDDQV-ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-- 145 (689)
Q Consensus 70 ~~v~fspd-g~~Lasgs~Dg~-I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-- 145 (689)
..|+|+|. ..-++.+-.-|+ ..++|...........+ ..-+.+.+|. .||+||.+|...-.
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s---------~~~RHfyGHG------vfs~dG~~LYATEndf 135 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVS---------QEGRHFYGHG------VFSPDGRLLYATENDF 135 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEec---------ccCceeeccc------ccCCCCcEEEeecCCC
Confidence 35677774 334555544444 56788877643322211 1223455565 59999998887543
Q ss_pred ---CCeEEEEEcCC-CeEEEEEecCCCCeEEEEEccCCCEEEEEeC------------------CCeEEEEECCCCccee
Q 040062 146 ---DNTIHIWNMST-GICTAVLRGHSSLVKGVAWDPIGSFIASQSD------------------DKTVIIWRTSDWSLAH 203 (689)
Q Consensus 146 ---Dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~las~s~------------------Dg~I~iwd~~~~~~~~ 203 (689)
-|.|-|||.+. .+.+..+..|.-....+.|.+||+.++.+.. .-++.+.|..+++++.
T Consensus 136 d~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~lie 215 (366)
T COG3490 136 DPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIE 215 (366)
T ss_pred CCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhh
Confidence 36899999975 3567778888877788999999999887643 1134455556666665
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeec--------CCCCCEEEEEEcCCccc
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFL--------GHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~--------~h~~~v~~v~fsp~~~~ 275 (689)
+...+.. ...-.++.+...+||..++.+--.+.....-.+.........+.+. .....|-+++.+.+
T Consensus 216 kh~Lp~~--l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~--- 290 (366)
T COG3490 216 KHTLPAS--LRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRR--- 290 (366)
T ss_pred hccCchh--hhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeeccc---
Confidence 5544311 2233488999999998887763222111111111100000000000 00112222332222
Q ss_pred cccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 276 RNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
++-+.++.-..+...+||..++..+...... ....+ -+...-+++.
T Consensus 291 -----------------------------~glV~lTSP~GN~~vi~da~tG~vv~~a~l~---daaGv--a~~~~gf~vs 336 (366)
T COG3490 291 -----------------------------DGLVALTSPRGNRAVIWDAATGAVVSEAALP---DAAGV--AAAKGGFAVS 336 (366)
T ss_pred -----------------------------CCeEEEecCCCCeEEEEEcCCCcEEeccccc---ccccc--eeccCceEEe
Confidence 2344555556677889999999877643321 11122 2344557777
Q ss_pred eCCCcEEEEE
Q 040062 356 SLDGTVANFH 365 (689)
Q Consensus 356 s~DG~I~vwd 365 (689)
+.+|.|.++.
T Consensus 337 sg~G~~~~~s 346 (366)
T COG3490 337 SGQGRIIFYS 346 (366)
T ss_pred cCCceEEecc
Confidence 7799998884
No 347
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.62 E-value=0.041 Score=60.09 Aligned_cols=246 Identities=13% Similarity=0.074 Sum_probs=124.2
Q ss_pred cEEEEEEcCCCCEEEEE-eCC----CeEEEEEcCCCCCccccCCCCCCCcccceEEE-EEecCCCCEEEEEEcCCCCEEE
Q 040062 68 SVNCVRWAKHGRYIASG-SDD----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSPDDSILA 141 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasg-s~D----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l~~spdg~~La 141 (689)
.+..+.++|+|++||.+ +.. ..++++|+.++ +.+. .+.... ...+.|.+|++.|+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-----------------~~l~d~i~~~~--~~~~~W~~d~~~~~ 185 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-----------------KFLPDGIENPK--FSSVSWSDDGKGFF 185 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-----------------EEEEEEEEEEE--SEEEEECTTSSEEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC-----------------cCcCCcccccc--cceEEEeCCCCEEE
Confidence 34467899999998865 333 35999999987 3332 222211 22399999988776
Q ss_pred EEeCCC-----------eEEEEEcCCCeE--EEEEecCCCC--eEEEEEccCCCEEEEEeC---C-CeEEEEECCCC---
Q 040062 142 SGSLDN-----------TIHIWNMSTGIC--TAVLRGHSSL--VKGVAWDPIGSFIASQSD---D-KTVIIWRTSDW--- 199 (689)
Q Consensus 142 sgs~Dg-----------~I~vwd~~~~~~--~~~l~~h~~~--V~~l~~spdg~~las~s~---D-g~I~iwd~~~~--- 199 (689)
....+. .|+.|.+.+... ...+...... ...+..++|+++|+..+. + ..+.+.|+...
T Consensus 186 y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~ 265 (414)
T PF02897_consen 186 YTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSP 265 (414)
T ss_dssp EEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTS
T ss_pred EEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCC
Confidence 665333 488888877532 2444433332 567889999998876442 2 35778888764
Q ss_pred -cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce---eeeeecCCCCCEEEEEEcCCccc
Q 040062 200 -SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA---ATFDFLGHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 200 -~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~---~~~~l~~h~~~v~~v~fsp~~~~ 275 (689)
.....+...... ....+... .+.+++.++ .+.....+...+..... ....+..|...+....+...+
T Consensus 266 ~~~~~~l~~~~~~-----~~~~v~~~-~~~~yi~Tn-~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~-- 336 (414)
T PF02897_consen 266 DAKPKLLSPREDG-----VEYYVDHH-GDRLYILTN-DDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFK-- 336 (414)
T ss_dssp S-SEEEEEESSSS------EEEEEEE-TTEEEEEE--TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEET--
T ss_pred cCCcEEEeCCCCc-----eEEEEEcc-CCEEEEeeC-CCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEEC--
Confidence 112222111111 11222222 333333333 33333333333333222 122334444432222222211
Q ss_pred cccccccccccccccccCCcccccCccCCCCcEEEEEeCCC--cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEE
Q 040062 276 RNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR--TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLF 353 (689)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~ 353 (689)
+.+++.--.++ .|++|++..+.....+...-.+.|..+...+++..|.
T Consensus 337 ------------------------------~~Lvl~~~~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~ 386 (414)
T PF02897_consen 337 ------------------------------DYLVLSYRENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELR 386 (414)
T ss_dssp ------------------------------TEEEEEEEETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEE
T ss_pred ------------------------------CEEEEEEEECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEE
Confidence 13445544554 4888998834444444443345566666666665443
Q ss_pred E--Ee--CCCcEEEEEeecccc
Q 040062 354 A--CS--LDGTVANFHFEVKEL 371 (689)
Q Consensus 354 s--gs--~DG~I~vwd~~~~~l 371 (689)
. .| .-++++.||+.++++
T Consensus 387 ~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 387 FSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEEEETTEEEEEEEEETTTTCE
T ss_pred EEEeCCCCCCEEEEEECCCCCE
Confidence 3 22 245778888877765
No 348
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.14 Score=55.03 Aligned_cols=148 Identities=20% Similarity=0.155 Sum_probs=101.7
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-
Q 040062 68 SVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL- 145 (689)
Q Consensus 68 ~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~- 145 (689)
.-..+++++.+. ..+....+..|.+.|.... +...... -......++++++++.+.++..
T Consensus 75 ~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~-----------------~~~~~~~-vG~~P~~~~~~~~~~~vYV~n~~ 136 (381)
T COG3391 75 YPAGVAVNPAGNKVYVTTGDSNTVSVIDTATN-----------------TVLGSIP-VGLGPVGLAVDPDGKYVYVANAG 136 (381)
T ss_pred cccceeeCCCCCeEEEecCCCCeEEEEcCccc-----------------ceeeEee-eccCCceEEECCCCCEEEEEecc
Confidence 345778888877 4455555689999996655 2222222 2226788999999987777665
Q ss_pred --CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 146 --DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 146 --Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
++.+.+.|..+.+.......-..+ ..++++|+|+.++... .++.|.+.|........ -. .............+.
T Consensus 137 ~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~-~~~~~~~~~~P~~i~ 213 (381)
T COG3391 137 NGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS-VGSLVGVGTGPAGIA 213 (381)
T ss_pred cCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc-cccccccCCCCceEE
Confidence 689999999999888886644445 8899999999666655 78899999977655553 11 111111122346789
Q ss_pred EcCCCCeEEEecCC
Q 040062 223 WSPCGHFITTTHGF 236 (689)
Q Consensus 223 ~spdg~~l~~~~~~ 236 (689)
++++|.++.+....
T Consensus 214 v~~~g~~~yV~~~~ 227 (381)
T COG3391 214 VDPDGNRVYVANDG 227 (381)
T ss_pred ECCCCCEEEEEecc
Confidence 99999988877553
No 349
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.54 E-value=0.03 Score=55.83 Aligned_cols=120 Identities=13% Similarity=0.166 Sum_probs=73.5
Q ss_pred eeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-CCCEEEEEEcCCC
Q 040062 60 ATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-TADVVDLNWSPDD 137 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg 137 (689)
..+.+-...+..++|+|+.+ ++++....+.|..++++ + +.++.+.-. ..+.-.|++..++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G-----------------~vlr~i~l~g~~D~EgI~y~g~~ 76 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G-----------------KVLRRIPLDGFGDYEGITYLGNG 76 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--------------------EEEEEE-SS-SSEEEEEE-STT
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C-----------------CEEEEEeCCCCCCceeEEEECCC
Confidence 34555666799999999755 66666677888878764 3 344444322 4678999998878
Q ss_pred CEEEEEeCCCeEEEEEcCCCe------EEEEEe-----cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 138 SILASGSLDNTIHIWNMSTGI------CTAVLR-----GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~~------~~~~l~-----~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
.++++--.++.+.++++.... ....+. .++..+-+++|++.++.|+.+-+..-..||.++
T Consensus 77 ~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 77 RYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred EEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 777766568999999883311 111221 245668999999988777777666666676654
No 350
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.53 E-value=0.012 Score=63.62 Aligned_cols=193 Identities=20% Similarity=0.190 Sum_probs=109.4
Q ss_pred EEecCCCCEEEEEEcCCCCEEEEEe---CC-CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEE-eCCCe--EE
Q 040062 120 TLRGHTADVVDLNWSPDDSILASGS---LD-NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ-SDDKT--VI 192 (689)
Q Consensus 120 ~l~~h~~~V~~l~~spdg~~Lasgs---~D-g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~--I~ 192 (689)
.+......+..-+|+|++..++... .. ..+.++|+.+++....+. ..+.-..-.|+|||++|+.. ..||. |.
T Consensus 187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy 265 (425)
T COG0823 187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIY 265 (425)
T ss_pred EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEE
Confidence 3333445577778999998665543 22 469999999876655544 22333456899999877654 45664 66
Q ss_pred EEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 193 IWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
++|+....... +..... .-..-.|+|||+.|+..+...+.- .+.+.+.. .+.+..+.++..
T Consensus 266 ~~dl~~~~~~~-Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p-~I~~~~~~-----------g~~~~riT~~~~ 326 (425)
T COG0823 266 LMDLDGKNLPR-LTNGFG------INTSPSWSPDGSKIVFTSDRGGRP-QIYLYDLE-----------GSQVTRLTFSGG 326 (425)
T ss_pred EEcCCCCccee-cccCCc------cccCccCCCCCCEEEEEeCCCCCc-ceEEECCC-----------CCceeEeeccCC
Confidence 66777666433 222211 123678999999999886543322 33333222 122233333222
Q ss_pred ccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC-Cc--EEEEeCCCCCceEEecccCCCCeEEEEEccCC
Q 040062 273 MFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD-RT--ITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D-g~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 349 (689)
.. .....++++++|+..+.. |. |.+.|+.++.....+.. ......-+|.++|
T Consensus 327 ~~-----------------------~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~--~~~~e~ps~~~ng 381 (425)
T COG0823 327 GN-----------------------SNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTS--TYLNESPSWAPNG 381 (425)
T ss_pred CC-----------------------cCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccc--cccCCCCCcCCCC
Confidence 10 012235566777766643 44 66777766654443332 3334566788888
Q ss_pred CeEEEEeC
Q 040062 350 YSLFACSL 357 (689)
Q Consensus 350 ~~L~sgs~ 357 (689)
..++..+.
T Consensus 382 ~~i~~~s~ 389 (425)
T COG0823 382 RMIMFSSG 389 (425)
T ss_pred ceEEEecc
Confidence 77766443
No 351
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.52 E-value=0.12 Score=52.87 Aligned_cols=162 Identities=10% Similarity=0.025 Sum_probs=94.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
..+++|+.|+.+| +++++... ......+. +...|..+...++-+.|+.-+ |+.++++++..-....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~-----------~~~~~~i~-~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD-----------PSKPTRIL-KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVS 70 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC-----------CccceeEe-ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccc
Confidence 4678999999988 89999832 11111121 222399999999877777665 4999999998653221
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEEEE--EcCCCCEEEEEeCCCeEEEEEcCCC-----eEEEEEecCCCCeEEEEE
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLN--WSPDDSILASGSLDNTIHIWNMSTG-----ICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~spdg~~Lasgs~Dg~I~vwd~~~~-----~~~~~l~~h~~~V~~l~~ 175 (689)
........ .-............+...+ -...+...+++.....|.+|..... ...+.+. -...+..++|
T Consensus 71 ~~~~~~~~---~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~ 146 (275)
T PF00780_consen 71 TSAPLAFP---KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAF 146 (275)
T ss_pred cccccccc---ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEE
Confidence 10000000 0000000111233444444 1123334444445568998887652 4555655 4577889999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 176 DPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 176 spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
. ++.|+.+..+ ...+.|+.++.....+
T Consensus 147 ~--~~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 147 L--GNKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred e--CCEEEEEeCC-ceEEEecCCCCceEEe
Confidence 8 6678878765 5889999876665443
No 352
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.36 E-value=0.29 Score=53.39 Aligned_cols=159 Identities=13% Similarity=0.147 Sum_probs=89.6
Q ss_pred eEEEEEEcCCCCEEEEEe-CC----CeEEEEeCCcCCCCCCCCcccceeeeee-cCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 15 QIFSIDVQPGALRFATGG-GD----HKVRIWNMKSVGKNFENDESTQRLLATL-RDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs-~D----g~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+..+.+||||++||.+- .. ..|+++|+++ ++.+... .... -..+.|.++++.|+....+.
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~t-----------g~~l~d~i~~~~--~~~~~W~~d~~~~~y~~~~~ 191 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLET-----------GKFLPDGIENPK--FSSVSWSDDGKGFFYTRFDE 191 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTT-----------TEEEEEEEEEEE--SEEEEECTTSSEEEEEECST
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCC-----------CcCcCCcccccc--cceEEEeCCCCEEEEEEeCc
Confidence 345788999999998762 22 4599999987 4444322 2111 12399999988877665433
Q ss_pred -----------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCC--CEEEEEEcCCCCEEEEEeC---C-CeEEE
Q 040062 89 -----------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA--DVVDLNWSPDDSILASGSL---D-NTIHI 151 (689)
Q Consensus 89 -----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~l~~spdg~~Lasgs~---D-g~I~v 151 (689)
.|+.|.+.+... .....+..... ....+..++|+++|+.... + ..+.+
T Consensus 192 ~~~~~~~~~~~~v~~~~~gt~~~---------------~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~ 256 (414)
T PF02897_consen 192 DQRTSDSGYPRQVYRHKLGTPQS---------------EDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYL 256 (414)
T ss_dssp TTSS-CCGCCEEEEEEETTS-GG---------------G-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEE
T ss_pred ccccccCCCCcEEEEEECCCChH---------------hCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEE
Confidence 367777765421 11223333222 2678889999998775432 2 46888
Q ss_pred EEcCCC----eEEEEEecCCCCeEEEEEccCCCEEEEEe---CCCeEEEEECCCCcc
Q 040062 152 WNMSTG----ICTAVLRGHSSLVKGVAWDPIGSFIASQS---DDKTVIIWRTSDWSL 201 (689)
Q Consensus 152 wd~~~~----~~~~~l~~h~~~V~~l~~spdg~~las~s---~Dg~I~iwd~~~~~~ 201 (689)
.|+..+ .....+..+...+....-+..+.+++... .++.|...++.+...
T Consensus 257 ~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~ 313 (414)
T PF02897_consen 257 LDLDDGGSPDAKPKLLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSP 313 (414)
T ss_dssp EECCCTTTSS-SEEEEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSG
T ss_pred EeccccCCCcCCcEEEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEeccccccc
Confidence 888774 23333333444443333333444444443 245677778776553
No 353
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.1 Score=56.21 Aligned_cols=196 Identities=14% Similarity=0.186 Sum_probs=128.1
Q ss_pred EEEEEcCCCCEEEEE-eCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEE
Q 040062 17 FSIDVQPGALRFATG-GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD---DQVILI 92 (689)
Q Consensus 17 ~si~~spdg~~Latg-s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---Dg~I~i 92 (689)
..+++++++.++... ..++.|.+.|... .+.+....--. .-..++|+++++.+..+.. ++.+.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~-----------~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTAT-----------NTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcc-----------cceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEE
Confidence 467888888855444 4458999999765 34444333222 5678999999987776655 678888
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEE-----EEecC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTA-----VLRGH 166 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~-----~l~~h 166 (689)
.|..++ +.......-..+ ..++++|++..++.+. .++.|.+.|........ .+. -
T Consensus 145 id~~t~-----------------~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~-~ 205 (381)
T COG3391 145 IDAATN-----------------KVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVG-V 205 (381)
T ss_pred EeCCCC-----------------eEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccc-c
Confidence 887776 344443333334 8999999999666655 78899999977665553 122 2
Q ss_pred CCCeEEEEEccCCCEEEEEeCC---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 167 SSLVKGVAWDPIGSFIASQSDD---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
......+.++++|+++...... +.+...|..++........... . ....+..+|+|.++.+.... ...+
T Consensus 206 ~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~----~-~~~~v~~~p~g~~~yv~~~~---~~~V 277 (381)
T COG3391 206 GTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGS----G-APRGVAVDPAGKAAYVANSQ---GGTV 277 (381)
T ss_pred CCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccccc----C-CCCceeECCCCCEEEEEecC---CCeE
Confidence 2334678999999976665543 5899999888766554111100 1 24568899999999988553 2344
Q ss_pred ceeecCCc
Q 040062 244 PVLERGEW 251 (689)
Q Consensus 244 ~i~~~~~~ 251 (689)
.+.+....
T Consensus 278 ~vid~~~~ 285 (381)
T COG3391 278 SVIDGATD 285 (381)
T ss_pred EEEeCCCC
Confidence 44444443
No 354
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.27 E-value=0.022 Score=61.15 Aligned_cols=195 Identities=11% Similarity=0.097 Sum_probs=109.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee--ecC------CCCcEEEEEEcC-----CC--
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT--LRD------HFGSVNCVRWAK-----HG-- 78 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~--l~~------h~~~V~~v~fsp-----dg-- 78 (689)
.+|++++.|.=| ++|.|..+|.+.|.|+.. +..+.. +.. ....|+++.|+- |+
T Consensus 87 g~vtal~~S~iG-Fvaigy~~G~l~viD~RG-----------PavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS 154 (395)
T PF08596_consen 87 GPVTALKNSDIG-FVAIGYESGSLVVIDLRG-----------PAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS 154 (395)
T ss_dssp -SEEEEEE-BTS-EEEEEETTSEEEEEETTT-----------TEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred CcEeEEecCCCc-EEEEEecCCcEEEEECCC-----------CeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence 599999998555 899999999999999976 444433 112 334688999873 33
Q ss_pred -CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccc--eEEEEEecCCCCEEEEE-EcCC------------------
Q 040062 79 -RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENW--KVAMTLRGHTADVVDLN-WSPD------------------ 136 (689)
Q Consensus 79 -~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~l~-~spd------------------ 136 (689)
-+|+.|...|.+.+|.+..... ..| ........+...|..|. |+.+
T Consensus 155 Si~L~vGTn~G~v~~fkIlp~~~------------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g 222 (395)
T PF08596_consen 155 SICLLVGTNSGNVLTFKILPSSN------------GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKG 222 (395)
T ss_dssp EEEEEEEETTSEEEEEEEEE-GG------------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT
T ss_pred ceEEEEEeCCCCEEEEEEecCCC------------CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccC
Confidence 3788999999999998863210 111 12222234556666555 3221
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEc-----cCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 137 --DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD-----PIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 137 --g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~s-----pdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
-+-++....+..++++..-+.+.........-....+++- ..+..|++-..+|.|++|.+-.-+.+.....+.
T Consensus 223 ~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~ 302 (395)
T PF08596_consen 223 ISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPP 302 (395)
T ss_dssp ----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS
T ss_pred CCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCC
Confidence 1223444457889999998877766555222233344553 356678888899999999999888877766542
Q ss_pred cccCCcccEEEEEEcCCCCeEEEec
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
. .....+...+++++|..++-.+
T Consensus 303 ~--~d~~~~~~ssis~~Gdi~~~~g 325 (395)
T PF08596_consen 303 P--LDSRRLSSSSISRNGDIFYWTG 325 (395)
T ss_dssp -----HHHHTT-EE-TTS-EEEE-S
T ss_pred c--cccccccccEECCCCCEEEEeC
Confidence 2 2233355677888888776653
No 355
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.27 E-value=0.14 Score=55.61 Aligned_cols=50 Identities=12% Similarity=0.268 Sum_probs=37.1
Q ss_pred eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Q 040062 36 KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPG 98 (689)
Q Consensus 36 ~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~ 98 (689)
.|+||+.. ++.+.++.--.+.|.++.|+.+.+ |+.-..||.+++||+...
T Consensus 62 ~I~iys~s------------G~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~ 111 (410)
T PF04841_consen 62 SIQIYSSS------------GKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGE 111 (410)
T ss_pred EEEEECCC------------CCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCCc
Confidence 47777766 466666654448999999998654 556678999999998743
No 356
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.26 E-value=0.26 Score=55.37 Aligned_cols=164 Identities=12% Similarity=0.084 Sum_probs=92.0
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC--CCCcEEEEEEcC---CCCEEEEEe------CCCeEEEEE
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD--HFGSVNCVRWAK---HGRYIASGS------DDQVILIHE 94 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~fsp---dg~~Lasgs------~Dg~I~iwd 94 (689)
.+++.++.|+.|.-.|.++ ++.+-.... +... ..+.-+| ++ .++.+. .+|.|..+|
T Consensus 121 ~~v~v~t~dg~l~ALDa~T-----------Gk~~W~~~~~~~~~~-~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD 187 (527)
T TIGR03075 121 GKVFFGTLDARLVALDAKT-----------GKVVWSKKNGDYKAG-YTITAAPLVVKG-KVITGISGGEFGVRGYVTAYD 187 (527)
T ss_pred CEEEEEcCCCEEEEEECCC-----------CCEEeeccccccccc-ccccCCcEEECC-EEEEeecccccCCCcEEEEEE
Confidence 4677788889999999887 455444321 1100 0111122 34 344443 268899999
Q ss_pred cCCCCCccccCCCCC---------------CCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-----C--------
Q 040062 95 KKPGSGTTEFGSGEP---------------PDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-----D-------- 146 (689)
Q Consensus 95 l~~~~~~~~~~~~~~---------------~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-----D-------- 146 (689)
.++++..-.+..... ...+.|.--.-..+....-..+++.+...+++.+.. +
T Consensus 188 ~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdn 267 (527)
T TIGR03075 188 AKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDN 267 (527)
T ss_pred CCCCceeEeccCcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCC
Confidence 998876544433211 112223211101111222234466665555555431 1
Q ss_pred ---CeEEEEEcCCCeEEEEEecCCCCeE---------EEEEccCCC---EEEEEeCCCeEEEEECCCCcce
Q 040062 147 ---NTIHIWNMSTGICTAVLRGHSSLVK---------GVAWDPIGS---FIASQSDDKTVIIWRTSDWSLA 202 (689)
Q Consensus 147 ---g~I~vwd~~~~~~~~~l~~h~~~V~---------~l~~spdg~---~las~s~Dg~I~iwd~~~~~~~ 202 (689)
..|.-.|+++|+....++.....+. -+.+..+|+ .++.+..+|.+++.|.++++.+
T Consensus 268 l~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 268 LYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred ccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 2788889999999887764222111 122334665 7788999999999999999876
No 357
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.19 E-value=0.0016 Score=71.11 Aligned_cols=118 Identities=14% Similarity=0.213 Sum_probs=89.6
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
|...|.--+++..++||+.|+.-|.+.+|+...+.. ......+....+..+..|++..++|.|+
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~----------------~~~~~~~~~~~~~~~~vs~~e~lvAagt 95 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM----------------RKLKNEGATGITCVRSVSSVEYLVAAGT 95 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhh----------------hcccccCccceEEEEEecchhHhhhhhc
Confidence 444566666777899999999999999999877631 1122222445567778888888899999
Q ss_pred CCCeEEEEEcCCCeEE---E--E-EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 145 LDNTIHIWNMSTGICT---A--V-LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~---~--~-l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
..|.|.++-+...... . . -+.|...|++++|++++..+++|...|+|..-.++.
T Consensus 96 ~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 96 ASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred CCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9999999987653221 1 1 123788999999999999999999999999988866
No 358
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.18 E-value=0.37 Score=49.72 Aligned_cols=261 Identities=10% Similarity=0.051 Sum_probs=127.8
Q ss_pred EEEEEcCCCCEEEEEe----------CCCeEEEEeCCcCCCCCCCCcccc-eeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 17 FSIDVQPGALRFATGG----------GDHKVRIWNMKSVGKNFENDESTQ-RLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 17 ~si~~spdg~~Latgs----------~Dg~V~IWd~~~~~~~~~~~~~~~-~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
-.+.++||++.+++++ ..-.|.+||..+.....+..-... +... . ...+.++++.||++++...
T Consensus 39 ~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~-~----~~~~~~~ls~dgk~~~V~N 113 (342)
T PF06433_consen 39 GNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQV-V----PYKNMFALSADGKFLYVQN 113 (342)
T ss_dssp EEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--B-S------GGGEEE-TTSSEEEEEE
T ss_pred CceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchhee-c----ccccceEEccCCcEEEEEc
Confidence 3466899999988763 244799999987321111100000 1100 0 1123357788888777653
Q ss_pred C--CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCeEEEE
Q 040062 86 D--DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS-TGICTAV 162 (689)
Q Consensus 86 ~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~-~~~~~~~ 162 (689)
. -..|.|-|+... +.+..+.. ..+..+-=+. ..-|.+-+.||.+.-..+. .|+....
T Consensus 114 ~TPa~SVtVVDl~~~-----------------kvv~ei~~--PGC~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk~~~~ 173 (342)
T PF06433_consen 114 FTPATSVTVVDLAAK-----------------KVVGEIDT--PGCWLIYPSG-NRGFSMLCGDGSLLTVTLDADGKEAQK 173 (342)
T ss_dssp ESSSEEEEEEETTTT-----------------EEEEEEEG--TSEEEEEEEE-TTEEEEEETTSCEEEEEETSTSSEEEE
T ss_pred cCCCCeEEEEECCCC-----------------ceeeeecC--CCEEEEEecC-CCceEEEecCCceEEEEECCCCCEeEe
Confidence 3 356888888776 55555542 2233332222 2357778889999888887 4554432
Q ss_pred Ee----cCCCCe-EEEEEccCCCEEEEEeCCCeEEEEECCCCcceee--ccCcccc----cCCcccEEEEEEcCCCCeEE
Q 040062 163 LR----GHSSLV-KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR--TDGHWAK----SLGSTFFRRLGWSPCGHFIT 231 (689)
Q Consensus 163 l~----~h~~~V-~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~--~~~~~~~----~~~~~~i~~l~~spdg~~l~ 231 (689)
.. ....++ ..-.+...+..++-.+.+|.|+--|+........ ....... .-......-+++++..+.|+
T Consensus 174 ~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly 253 (342)
T PF06433_consen 174 STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY 253 (342)
T ss_dssp EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence 21 111222 2233444555555577889999888866542211 1100000 00001122355555444444
Q ss_pred EecC------CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 232 TTHG------FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 232 ~~~~------~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
+... .......+.+++..+.+....+.. ..++.++..+.+.
T Consensus 254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~-------------------------------- 300 (342)
T PF06433_consen 254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDD-------------------------------- 300 (342)
T ss_dssp EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSS--------------------------------
T ss_pred EEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCC--------------------------------
Confidence 3211 111122333445554444443331 1234455555442
Q ss_pred CcEEE-EEeCCCcEEEEeCCCCCceEEeccc
Q 040062 306 YNVIA-IGSQDRTITVWTTASPRPLFVAKHF 335 (689)
Q Consensus 306 ~~~la-sgs~Dg~I~iwd~~~~~~~~~~~~~ 335 (689)
..+|+ ....++.|.+||..+++.+..+...
T Consensus 301 ~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 301 KPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp S-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 23554 4456899999999999999887753
No 359
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.18 E-value=0.32 Score=54.59 Aligned_cols=58 Identities=16% Similarity=0.251 Sum_probs=40.9
Q ss_pred CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 316 RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 316 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
|.|.-+|+.+++.+........ ..... ..-.+.+++.++.||.++.+|.++++.+...
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~ 498 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKF 498 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEE
Confidence 6788899999988887654321 11121 2225567788888999999999999887543
No 360
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.17 E-value=0.00011 Score=78.83 Aligned_cols=190 Identities=15% Similarity=0.224 Sum_probs=115.5
Q ss_pred eecCceEEEEEEcC-CCCEEEEEe----CCCeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCEEEE
Q 040062 10 RHEGMQIFSIDVQP-GALRFATGG----GDHKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 10 ~H~g~~I~si~~sp-dg~~Latgs----~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~Las 83 (689)
+|. ...++++|++ |.+.||.|- .|..+.|||+.+.... ++.-..|.. -....++++|..+.+++.+
T Consensus 100 ~~a-r~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltv-------Pke~~~fs~~~l~gqns~cwlrd~klvla 171 (783)
T KOG1008|consen 100 GYA-RPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTV-------PKESPLFSSSTLDGQNSVCWLRDTKLVLA 171 (783)
T ss_pred ccc-ccccccccccccHHHHHhhhhhhcccCCccceecccccCC-------CccccccccccccCccccccccCcchhhc
Confidence 344 5899999998 557777773 3678999999873210 111111221 3344568899999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEc-CCCeE-E
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNM-STGIC-T 160 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~-~~~~~-~ 160 (689)
|...+.+.++|++... .....-.+..+..+...| ...|+++-. |+.|.+||. ..-+. +
T Consensus 172 Gm~sr~~~ifdlRqs~------------------~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl 232 (783)
T KOG1008|consen 172 GMTSRSVHIFDLRQSL------------------DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPL 232 (783)
T ss_pred ccccchhhhhhhhhhh------------------hhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHH
Confidence 9999999999997431 111111234566777777 566777655 999999993 33222 2
Q ss_pred EEEecCC-----CCeEEEEEccCC-CEEEEEe-CCCeEEEEECCCCc----------ceeeccCcccccCCcccEEEEEE
Q 040062 161 AVLRGHS-----SLVKGVAWDPIG-SFIASQS-DDKTVIIWRTSDWS----------LAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 161 ~~l~~h~-----~~V~~l~~spdg-~~las~s-~Dg~I~iwd~~~~~----------~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
..+. |+ ..+..++|.|.. ..+++.. ..++|++||+..-. ....-..+........+|....|
T Consensus 233 ~~i~-~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~~~~~~s~~~~q~~~~~s~I~~f~w 311 (783)
T KOG1008|consen 233 QIIL-RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSVFVNYESKYPVQPNSQCSGIDFFTW 311 (783)
T ss_pred HHHh-hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccceeeecccccccccccccceeecCc
Confidence 2221 22 248899999954 3455555 45789999975210 01111112233333466788888
Q ss_pred cCCC
Q 040062 224 SPCG 227 (689)
Q Consensus 224 spdg 227 (689)
++..
T Consensus 312 H~~s 315 (783)
T KOG1008|consen 312 HTAS 315 (783)
T ss_pred CcCC
Confidence 7654
No 361
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=97.11 E-value=0.06 Score=56.72 Aligned_cols=58 Identities=14% Similarity=0.042 Sum_probs=38.7
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEE---ecccCCCCeEEEEEccCCCeEEEEeCCCcEE
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFV---AKHFFTQSVVDLSWSPDGYSLFACSLDGTVA 362 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~---~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~ 362 (689)
.+.+++..-..+.|....++....+.. +.......+.++++.|||.++++.+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345666666667888888765543322 2223345799999999999988888888875
No 362
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.11 E-value=0.0024 Score=69.06 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=78.5
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEE-EEEEcCCCCEEEEEe
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV-DLNWSPDDSILASGS 144 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~Lasgs 144 (689)
...|.-+.|+|.-.+||.+..+|.|.+..+. |+.+.++.-|...++ +++|.|||+.||+|-
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~ 81 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN------------------WQRLWTIPIPGENVTASLCWRPDGKLLAVGF 81 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec------------------cceeEeccCCCCccceeeeecCCCCEEEEEe
Confidence 3468889999999999999999999998764 467778877777777 999999999999999
Q ss_pred CCCeEEEEEcCCCeEEEEE-ecCCCCeEEEEEcc
Q 040062 145 LDNTIHIWNMSTGICTAVL-RGHSSLVKGVAWDP 177 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l-~~h~~~V~~l~~sp 177 (689)
.||+|++.|+.++..+..+ ..-...|.++.|++
T Consensus 82 kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 82 KDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999998877662 22456778888863
No 363
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.0023 Score=69.18 Aligned_cols=75 Identities=23% Similarity=0.296 Sum_probs=67.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEE-EEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN-CVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~-~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..|.-+.|+|.-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|.|||++||.|-.||+|++
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n------------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L 88 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLN------------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRL 88 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEec------------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEE
Confidence 468899999999999999999999999887 466777877777777 9999999999999999999999
Q ss_pred EEcCCCCC
Q 040062 93 HEKKPGSG 100 (689)
Q Consensus 93 wdl~~~~~ 100 (689)
.|+.++..
T Consensus 89 ~Dve~~~~ 96 (665)
T KOG4640|consen 89 HDVEKGGR 96 (665)
T ss_pred EEccCCCc
Confidence 99998853
No 364
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.06 E-value=0.0015 Score=43.17 Aligned_cols=38 Identities=42% Similarity=0.716 Sum_probs=33.9
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
+....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 45666778999999999999999999999999999995
No 365
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.05 E-value=0.21 Score=51.72 Aligned_cols=228 Identities=14% Similarity=0.059 Sum_probs=119.3
Q ss_pred EEEcCCCCEEEEE-eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 72 VRWAKHGRYIASG-SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIH 150 (689)
Q Consensus 72 v~fspdg~~Lasg-s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~ 150 (689)
-.|.++...|+.+ -..+.|.-|+..++. ...+. +...+.++..-.++..|+++. ..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~------------------~~~~~-~p~~~~~~~~~d~~g~Lv~~~--~g~~ 88 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGK------------------KRVFP-SPGGFSSGALIDAGGRLIACE--HGVR 88 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCc------------------eEEEE-CCCCcccceeecCCCeEEEEc--cccE
Confidence 3577777755444 456788888887652 22233 223344444443444555553 3466
Q ss_pred EEEcCCCeEEEEEec-----CCCCeEEEEEccCCCEEEEEeC-----C----CeEEEEECC-CCcceeeccCcccccCCc
Q 040062 151 IWNMSTGICTAVLRG-----HSSLVKGVAWDPIGSFIASQSD-----D----KTVIIWRTS-DWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 151 vwd~~~~~~~~~l~~-----h~~~V~~l~~spdg~~las~s~-----D----g~I~iwd~~-~~~~~~~~~~~~~~~~~~ 215 (689)
+++..++.....+.. .....+.+..+|+|.+.++... . ..=.+|.+. .+..+..+..+.
T Consensus 89 ~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~------ 162 (307)
T COG3386 89 LLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDL------ 162 (307)
T ss_pred EEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcE------
Confidence 777665555332211 1134567788899987776544 1 112455554 444444444322
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
..-+.++||||++.++.+.......+...+ .. . .... .+....+.+.. ...
T Consensus 163 ~~~NGla~SpDg~tly~aDT~~~~i~r~~~---d~--~--~g~~-~~~~~~~~~~~---------------------~~G 213 (307)
T COG3386 163 TIPNGLAFSPDGKTLYVADTPANRIHRYDL---DP--A--TGPI-GGRRGFVDFDE---------------------EPG 213 (307)
T ss_pred EecCceEECCCCCEEEEEeCCCCeEEEEec---Cc--c--cCcc-CCcceEEEccC---------------------CCC
Confidence 225789999999998887553222211111 00 0 0000 01111111110 000
Q ss_pred ccccCccCCCCcEEEEEeCCC-cEEEEeCCCCCceEEecccCCCCeEEEEEc-cCCCeEEEEeC
Q 040062 296 SKIGGKESQPYNVIAIGSQDR-TITVWTTASPRPLFVAKHFFTQSVVDLSWS-PDGYSLFACSL 357 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~Dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~L~sgs~ 357 (689)
..-......++++.+++..+| .|.+|+.. ++.+..+.... ..+++++|- ++.+.|++.+.
T Consensus 214 ~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~-~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 214 LPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV-KRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred CCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC-CCCccceEeCCCcCEEEEEec
Confidence 111122233556776555554 89999988 88888877643 667888884 56666666554
No 366
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.03 E-value=0.24 Score=50.53 Aligned_cols=127 Identities=16% Similarity=0.156 Sum_probs=73.6
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
.++.|+.|+++| +.++++.... ...... +...|..|...++-+.|++-+ |+.++++++..
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~----------------~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~ 65 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPS----------------KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDS 65 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCc----------------cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchh
Confidence 577899999999 8888883221 111111 222399999998877666655 59999999876
Q ss_pred CeEEEEE--------------ecCCCCeEEEE--EccCC-CEEEEEeCCCeEEEEECCCC-----cceeeccCcccccCC
Q 040062 157 GICTAVL--------------RGHSSLVKGVA--WDPIG-SFIASQSDDKTVIIWRTSDW-----SLAHRTDGHWAKSLG 214 (689)
Q Consensus 157 ~~~~~~l--------------~~h~~~V~~l~--~spdg-~~las~s~Dg~I~iwd~~~~-----~~~~~~~~~~~~~~~ 214 (689)
....... ......+...+ -...+ .+|+.+. ..+|.+|..... ....++..+
T Consensus 66 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp------ 138 (275)
T PF00780_consen 66 LEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLP------ 138 (275)
T ss_pred hccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcC------
Confidence 4433311 11223344444 11233 4555554 458999887653 333444333
Q ss_pred cccEEEEEEcCCCCeEEEe
Q 040062 215 STFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~ 233 (689)
..+..++|. ++.++.+
T Consensus 139 -~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 139 -DPPSSIAFL--GNKICVG 154 (275)
T ss_pred -CCcEEEEEe--CCEEEEE
Confidence 236778887 4445444
No 367
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.02 E-value=0.086 Score=54.52 Aligned_cols=225 Identities=16% Similarity=0.035 Sum_probs=121.9
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 131 LNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 131 l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
-.|.++...| .+--..+.|+-||..+++... +. +.+.+.++..-..+..|+++.. .+.+++.+++.....+....
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~~~ 105 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACEH--GVRLLDPDTGGKITLLAEPE 105 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEcc--ccEEEeccCCceeEEecccc
Confidence 3577777744 444567899999998664433 22 2233344444334445555543 36777776665533332222
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecC-----CCC--CccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHG-----FQK--PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~-----~~~--~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
.. ......+.+...|+|.+.+.... ... ....++.++. .......+..+-..-..++|+|++
T Consensus 106 ~~-~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg--------- 174 (307)
T COG3386 106 DG-LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDG--------- 174 (307)
T ss_pred CC-CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCC---------
Confidence 21 22244678889999998888765 111 1111222221 111111222222333456666665
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeC-CCcEEEEeCCC------CCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTAS------PRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~------~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
+.|+.... .+.|+-|++.. ++..........+..-.++...+|.+.+++
T Consensus 175 ------------------------~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a 230 (307)
T COG3386 175 ------------------------KTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAA 230 (307)
T ss_pred ------------------------CEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEec
Confidence 45555444 47788887752 122222222335666778888899887655
Q ss_pred eCCC-cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC-chhhhhH
Q 040062 356 SLDG-TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET-PAQLLLE 408 (689)
Q Consensus 356 s~DG-~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S-pdg~~La 408 (689)
-.+| .|.+|+.+ +++...+.. ....+++++|- ++...|.
T Consensus 231 ~~~g~~v~~~~pd-G~l~~~i~l-------------P~~~~t~~~FgG~~~~~L~ 271 (307)
T COG3386 231 VWGGGRVVRFNPD-GKLLGEIKL-------------PVKRPTNPAFGGPDLNTLY 271 (307)
T ss_pred ccCCceEEEECCC-CcEEEEEEC-------------CCCCCccceEeCCCcCEEE
Confidence 5555 89999988 665543321 22357888884 4444443
No 368
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.00 E-value=0.0022 Score=42.25 Aligned_cols=39 Identities=41% Similarity=0.743 Sum_probs=34.4
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd 195 (689)
++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 369
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.96 E-value=0.16 Score=53.38 Aligned_cols=136 Identities=13% Similarity=0.136 Sum_probs=77.8
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEE---EEcCC----CCEEEEEeC----------CCeEEEEEcC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCV---RWAKH----GRYIASGSD----------DQVILIHEKK 96 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v---~fspd----g~~Lasgs~----------Dg~I~iwdl~ 96 (689)
..|+|.|..+ .+.+.++.- ....++++ .|..+ ..+|+.|+. .|.|.++++.
T Consensus 2 s~i~l~d~~~-----------~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~ 70 (321)
T PF03178_consen 2 SSIRLVDPTT-----------FEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEIS 70 (321)
T ss_dssp -EEEEEETTT-----------SSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEEC
T ss_pred cEEEEEeCCC-----------CeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEE
Confidence 3578888765 333433321 22334443 44432 468887753 2889999998
Q ss_pred CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-EEEEEec-CCCCeEEEE
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-CTAVLRG-HSSLVKGVA 174 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~-~~~~l~~-h~~~V~~l~ 174 (689)
... .....++.+... ...+.|++|+-- ++. |+++. .+.|.+|++...+ ....-.- ....+.++.
T Consensus 71 ~~~----------~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~ 136 (321)
T PF03178_consen 71 ESP----------ENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLS 136 (321)
T ss_dssp SS---------------EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEE
T ss_pred ccc----------ccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEe
Confidence 740 000112333333 346789998876 344 44443 5899999998877 4433321 233555555
Q ss_pred EccCCCEEEEEeCCCeEEEEECC
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~ 197 (689)
.. +++|+.|+....+.++..+
T Consensus 137 ~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 137 VF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EE--TTEEEEEESSSSEEEEEEE
T ss_pred cc--ccEEEEEEcccCEEEEEEE
Confidence 44 6799999888888877543
No 370
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.94 E-value=0.079 Score=45.19 Aligned_cols=100 Identities=10% Similarity=0.181 Sum_probs=67.8
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 16 IFSIDVQP---GA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 16 I~si~~sp---dg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
|++|++.. || +.|++|+.|..||||+-+ ..+..+. ..+.|+++.-... ..|+.+-.+|+|-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------------e~~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVG 66 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------------EIVAEIT-ETDKVTSLCSLGG-GRFAYALANGTVG 66 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------------cEEEEEe-cccceEEEEEcCC-CEEEEEecCCEEE
Confidence 45555544 44 689999999999999864 4566665 3456788877765 5799999999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC---CC-CEEEEEeCCCeEE
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP---DD-SILASGSLDNTIH 150 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp---dg-~~Lasgs~Dg~I~ 150 (689)
+|+-.. .+-..+. ...+.++++.. || ..|++|-.+|.|-
T Consensus 67 vY~~~~-------------------RlWRiKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 67 VYDRSQ-------------------RLWRIKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEeCcc-------------------eeeeecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 997642 2222332 23366665542 23 2788888888764
No 371
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.93 E-value=0.088 Score=44.90 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=69.0
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 69 VNCVRWAK---HG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 69 V~~v~fsp---dg-~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
|++|++.. +| +.|+.|++|..|++|+-+ ..+..+.. ...|+.|+-... ..++.+.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------------------e~~~Ei~e-~~~v~~L~~~~~-~~F~Y~l 60 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------------------EIVAEITE-TDKVTSLCSLGG-GRFAYAL 60 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------------------cEEEEEec-ccceEEEEEcCC-CEEEEEe
Confidence 66777664 33 589999999999999755 35555553 456788877755 6799999
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc-CC---CEEEEEeCCCeEE
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IG---SFIASQSDDKTVI 192 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg---~~las~s~Dg~I~ 192 (689)
.+|+|-+|+- ...+..++.. ..+.++.+.. ++ .-|++|-.+|.|-
T Consensus 61 ~NGTVGvY~~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 61 ANGTVGVYDR--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cCCEEEEEeC--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 9999999986 3444555533 3355665543 32 3688888888764
No 372
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.90 E-value=0.026 Score=64.81 Aligned_cols=146 Identities=12% Similarity=0.100 Sum_probs=95.4
Q ss_pred CCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCC-eEEEEEccCC-------CEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 137 DSILASG-SLDNTIHIWNMSTGICTAVLRGHSSL-VKGVAWDPIG-------SFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 137 g~~Lasg-s~Dg~I~vwd~~~~~~~~~l~~h~~~-V~~l~~spdg-------~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
.++|+.- .....|+-.|++.|+.+.....|... |..+ .|+. ...+.|-.+..|..||.|-... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~--k--- 565 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN--K--- 565 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCC--c---
Confidence 3444433 35678999999999999999987754 5554 3432 2345666777899999873210 0
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
+.++. ++ .+ .......|++-+.+|
T Consensus 566 -------------~v~~~-~k---------------------------~Y-~~~~~Fs~~aTt~~G-------------- 589 (794)
T PF08553_consen 566 -------------LVDSQ-SK---------------------------QY-SSKNNFSCFATTEDG-------------- 589 (794)
T ss_pred -------------eeecc-cc---------------------------cc-ccCCCceEEEecCCc--------------
Confidence 00000 00 00 112344556555554
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
+||+|+.+|.||+||- .++.-.+...+...+|.+|..+.||++|++.+ +..+.+++..
T Consensus 590 --------------------~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 590 --------------------YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred --------------------eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 8999999999999994 33333333334578999999999999998877 6678888864
No 373
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.86 E-value=0.11 Score=58.95 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=82.1
Q ss_pred CcEEEEEEcCCCCEEEEEe------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE
Q 040062 67 GSVNCVRWAKHGRYIASGS------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L 140 (689)
..+...+++|+|+.+|... .|..-.||-...+. .....+.+. ..+.-.|+|||..|
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg----------------~~~~lt~g~--~~t~PsWspDG~~l 411 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG----------------VAVQVLEGH--SLTRPSWSLDADAV 411 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC----------------cceeeecCC--CCCCceECCCCCce
Confidence 4678899999999887765 24444455433221 111112222 37788999998877
Q ss_pred EEEeCC------------CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEE---EECCCCcceeec
Q 040062 141 ASGSLD------------NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVII---WRTSDWSLAHRT 205 (689)
Q Consensus 141 asgs~D------------g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~i---wd~~~~~~~~~~ 205 (689)
++.... +.+.+.++..++... .....|..+.|+|||..|+... ++.|++ -....+. ..+
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~--~~l 485 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ--YAL 485 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc--eee
Confidence 776533 233333443333222 2356799999999999888766 467777 4444443 222
Q ss_pred cCcccccCCc-ccEEEEEEcCCCCeEEE
Q 040062 206 DGHWAKSLGS-TFFRRLGWSPCGHFITT 232 (689)
Q Consensus 206 ~~~~~~~~~~-~~i~~l~~spdg~~l~~ 232 (689)
.....-.... ..+..+.|..++..++.
T Consensus 486 ~~~~~l~~~l~~~~~~l~W~~~~~L~V~ 513 (591)
T PRK13616 486 TNPREVGPGLGDTAVSLDWRTGDSLVVG 513 (591)
T ss_pred cccEEeecccCCccccceEecCCEEEEE
Confidence 1111111111 12467889999996644
No 374
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.76 E-value=0.027 Score=63.71 Aligned_cols=159 Identities=14% Similarity=0.141 Sum_probs=86.8
Q ss_pred eEEEEEEcCCCCEEEEEe------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC-
Q 040062 15 QIFSIDVQPGALRFATGG------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD- 87 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D- 87 (689)
.+.+.+++|||+++|..- .|..-.||-.... +.......+. ....-.|+|+|+.|++..+.
T Consensus 351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g----------g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~ 418 (591)
T PRK13616 351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG----------GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGN 418 (591)
T ss_pred CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC----------CcceeeecCC--CCCCceECCCCCceEEEecCc
Confidence 688999999999887765 2444444543220 1111112222 37888999999988887643
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE---EEcCCCeE-E---
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHI---WNMSTGIC-T--- 160 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~v---wd~~~~~~-~--- 160 (689)
..+++.+............ ....... .....|..+.|||||..++... ++.|++ -....|+. +
T Consensus 419 ~~~~v~~~~~~gql~~~~v------d~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~ 488 (591)
T PRK13616 419 TVVRVIRDPATGQLARTPV------DASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNP 488 (591)
T ss_pred ceEEEeccCCCceEEEEec------cCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeeccc
Confidence 2233332211110000000 0000101 2345799999999999888766 577777 44444541 1
Q ss_pred EEEe-cCCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 161 AVLR-GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 161 ~~l~-~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
..+. .-...+..+.|..++.++ ++..++...+|.+
T Consensus 489 ~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v 524 (591)
T PRK13616 489 REVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYV 524 (591)
T ss_pred EEeecccCCccccceEecCCEEE-EEecCCCCceEEE
Confidence 1122 223346789999988855 5554444445543
No 375
>PRK10115 protease 2; Provisional
Probab=96.71 E-value=1.8 Score=50.36 Aligned_cols=111 Identities=9% Similarity=0.048 Sum_probs=67.4
Q ss_pred CcEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE
Q 040062 67 GSVNCVRWAKHGRYIASGSDD-----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA 141 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La 141 (689)
-.+..+.|+|||++|+.+.+. ..|++.|+.++... ...+. ... ..++|++|++.|+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l----------------~~~i~-~~~--~~~~w~~D~~~~~ 187 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY----------------PELLD-NVE--PSFVWANDSWTFY 187 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC----------------Ccccc-Ccc--eEEEEeeCCCEEE
Confidence 347778999999998876443 35888888766210 11111 111 4589999998666
Q ss_pred EEeCC------CeEEEEEcCCC--eEEEEEecCCCCeE-EEEEccCCCEEEEEeC---CCeEEEEEC
Q 040062 142 SGSLD------NTIHIWNMSTG--ICTAVLRGHSSLVK-GVAWDPIGSFIASQSD---DKTVIIWRT 196 (689)
Q Consensus 142 sgs~D------g~I~vwd~~~~--~~~~~l~~h~~~V~-~l~~spdg~~las~s~---Dg~I~iwd~ 196 (689)
....+ ..|+.+++.++ +-...+........ .+..+.++++++..+. ++.+.+|+.
T Consensus 188 y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~ 254 (686)
T PRK10115 188 YVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA 254 (686)
T ss_pred EEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence 65432 37888899887 33444443333333 3333447887665443 457888885
No 376
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.71 E-value=1.8 Score=50.10 Aligned_cols=114 Identities=16% Similarity=0.133 Sum_probs=68.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee--cCCCCcEEEEEEcCCC------CEEEEEeC
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL--RDHFGSVNCVRWAKHG------RYIASGSD 86 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~fspdg------~~Lasgs~ 86 (689)
.+++...+-+...++.++.++.+...++.. .. ++.. ......|.|+.++|-| ++++.|.+
T Consensus 489 ~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~-----------~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~W 556 (1096)
T KOG1897|consen 489 KITIGVVSANASQVVVAGGGLALFYLEIED-----------GG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLW 556 (1096)
T ss_pred ceEEEEEeecceEEEEecCccEEEEEEeec-----------cc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEee
Confidence 355555555566677777766666666654 11 2222 2345689999999832 37888888
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR--GHTADVVDLNWSPDDSILASGSLDNTIHIWNM 154 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~ 154 (689)
+..+.+.-....... .....+. .-...|...+|-.|..+|.++..||.+.-|-+
T Consensus 557 s~~~~~l~~~pd~~~--------------~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~ 612 (1096)
T KOG1897|consen 557 SDISMILTFLPDLIL--------------ITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVL 612 (1096)
T ss_pred cceEEEEEECCCcce--------------eeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEE
Confidence 776665544433110 0111111 12244666677767889999999998876644
No 377
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.68 E-value=0.35 Score=52.55 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=37.9
Q ss_pred eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 148 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.|.||+. .|+.+..+.-..+.|.++.|+.+.. |+.-..||.+++||+..
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCCCe-EEEEEcCCEEEEEeCCC
Confidence 5999987 5667776655558999999987554 55666899999999863
No 378
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.64 E-value=0.96 Score=48.64 Aligned_cols=79 Identities=16% Similarity=0.244 Sum_probs=47.2
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEE---EeCCcCCCCCCCCcccceeeeeecCCC-CcEEEEEEcC-----------CCCEE
Q 040062 17 FSIDVQPGALRFATGGGDHKVRI---WNMKSVGKNFENDESTQRLLATLRDHF-GSVNCVRWAK-----------HGRYI 81 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~I---Wd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fsp-----------dg~~L 81 (689)
.++..+|++.+||.+..+..+.+ |+...... ............+.... ..|+++.|-| |...+
T Consensus 5 ~~isls~~~d~laiA~~~r~vil~~~w~~~~~~~--~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I 82 (415)
T PF14655_consen 5 CSISLSPDGDLLAIARGQRLVILTSKWDSSRKGE--NENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCI 82 (415)
T ss_pred ceEEecCCCCEEEEEcCCEEEEEEeeccccccCC--CCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEE
Confidence 46788999999999988766665 54422110 00000111112222211 4677666643 45789
Q ss_pred EEEeCCCeEEEEEcCC
Q 040062 82 ASGSDDQVILIHEKKP 97 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~ 97 (689)
+.|..+|.|++|....
T Consensus 83 ~VG~ssG~vrfyte~G 98 (415)
T PF14655_consen 83 AVGTSSGYVRFYTENG 98 (415)
T ss_pred EEEecccEEEEEeccc
Confidence 9999999999998743
No 379
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.61 E-value=1.1 Score=47.80 Aligned_cols=147 Identities=13% Similarity=0.161 Sum_probs=69.8
Q ss_pred CCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecC---CC----CcEEEEEEcCCCCEEEEEeC--C----Ce
Q 040062 24 GALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRD---HF----GSVNCVRWAKHGRYIASGSD--D----QV 89 (689)
Q Consensus 24 dg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~---h~----~~V~~v~fspdg~~Lasgs~--D----g~ 89 (689)
+.++|+..+ ..+.|+|.|+.+ +...+++.+.+.. +. ..-..+..-|+|+.++|+-. + |-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~-------dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Gg 158 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKT-------DPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGG 158 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S--------TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--E
T ss_pred cCCcEEeeeeccCcEEEEECCC-------CCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCc
Confidence 456777777 578999999986 3334555555543 11 22334445578988888632 2 45
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecC---CCCEEEEEEcCCCCEEEEEe--------------------CC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH---TADVVDLNWSPDDSILASGS--------------------LD 146 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h---~~~V~~l~~spdg~~Lasgs--------------------~D 146 (689)
+.++|-++- +........ ..--.++-|.|..+.++|.. ..
T Consensus 159 f~llD~~tf-----------------~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG 221 (461)
T PF05694_consen 159 FVLLDGETF-----------------EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYG 221 (461)
T ss_dssp EEEE-TTT-------------------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S-
T ss_pred EEEEcCccc-----------------cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhccccc
Confidence 666665543 233333221 22345667777777777753 24
Q ss_pred CeEEEEEcCCCeEEEEEecCC--CCeEEEEEccC--CCEEEEE-eCCCeEEEE
Q 040062 147 NTIHIWNMSTGICTAVLRGHS--SLVKGVAWDPI--GSFIASQ-SDDKTVIIW 194 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~--~~V~~l~~spd--g~~las~-s~Dg~I~iw 194 (689)
.++.+||+.+.+.++++.-.. ..+..|.|..+ ..+=+++ .-..+|..|
T Consensus 222 ~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~ 274 (461)
T PF05694_consen 222 HSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRF 274 (461)
T ss_dssp -EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEE
T ss_pred CeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEE
Confidence 689999999999999987543 23556777554 4443333 333344444
No 380
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=96.57 E-value=0.89 Score=48.67 Aligned_cols=146 Identities=13% Similarity=0.141 Sum_probs=79.3
Q ss_pred CcEEEEEEcCCCCEEEEEe-----------CCC-eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 67 GSVNCVRWAKHGRYIASGS-----------DDQ-VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs-----------~Dg-~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
.....|+|.++|+++++-. ..+ .|.+++-..+.... .....+...-.....|+|.
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~-------------d~~~vfa~~l~~p~Gi~~~ 80 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKY-------------DKSNVFAEELSMVTGLAVA 80 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCc-------------ceeEEeecCCCCccceeEe
Confidence 3457889999999877653 223 67666544332110 1223333334456889999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCC-------CeEE-EEEec----CCCCeEEEEEccCCCEEEEEeCC--------------
Q 040062 135 PDDSILASGSLDNTIHIWNMST-------GICT-AVLRG----HSSLVKGVAWDPIGSFIASQSDD-------------- 188 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~-------~~~~-~~l~~----h~~~V~~l~~spdg~~las~s~D-------------- 188 (689)
+++ +++ +.....+++.|... .+.+ ..+.. +......++|.|||.+.++.+..
T Consensus 81 ~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~ 158 (367)
T TIGR02604 81 VGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDES 158 (367)
T ss_pred cCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCc
Confidence 888 444 44443333435431 1122 12222 13447789999999877655421
Q ss_pred -----CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 189 -----KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 189 -----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
|.|.-++....+... +... ......++|+++|+.+++-+
T Consensus 159 ~~~~~g~i~r~~pdg~~~e~-~a~G------~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 159 RQGLGGGLFRYNPDGGKLRV-VAHG------FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred ccccCceEEEEecCCCeEEE-EecC------cCCCccceECCCCCEEEEcc
Confidence 334444544433221 2111 12246789999998887654
No 381
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.50 E-value=0.056 Score=62.18 Aligned_cols=138 Identities=12% Similarity=0.127 Sum_probs=92.5
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc-EEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCCCccccCCC
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS-VNCVRWAK-----HGRYIASGSDDQVILIHEKKPGSGTTEFGSG 107 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~v~fsp-----dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~ 107 (689)
...|+-.|++. ++.+..+..|... |..++=.. +....+.|-.+..+..||.+-....
T Consensus 503 ~~~ly~mDLe~-----------GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k------ 565 (794)
T PF08553_consen 503 PNKLYKMDLER-----------GKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK------ 565 (794)
T ss_pred CCceEEEecCC-----------CcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc------
Confidence 45666666665 8888888877643 55443321 1234456667788999998854210
Q ss_pred CCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC
Q 040062 108 EPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD 187 (689)
Q Consensus 108 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~ 187 (689)
-.+...+.+ ......+|++-+.+| +||+|+.+|.|++||-.....-..+.+-..+|.+|..+.||++|+..+.
T Consensus 566 -----~v~~~~k~Y-~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~ 638 (794)
T PF08553_consen 566 -----LVDSQSKQY-SSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCK 638 (794)
T ss_pred -----eeecccccc-ccCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeec
Confidence 001112222 345668888887666 7999999999999995333333345567899999999999999988775
Q ss_pred CCeEEEEEC
Q 040062 188 DKTVIIWRT 196 (689)
Q Consensus 188 Dg~I~iwd~ 196 (689)
. .|.+++.
T Consensus 639 t-yLlLi~t 646 (794)
T PF08553_consen 639 T-YLLLIDT 646 (794)
T ss_pred c-eEEEEEE
Confidence 4 7888876
No 382
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.057 Score=57.60 Aligned_cols=149 Identities=14% Similarity=0.126 Sum_probs=97.7
Q ss_pred CCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCE-------EEEEeCCCeEEEEECCCCcceeeccC
Q 040062 136 DDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF-------IASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 136 dg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~-------las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
+.+ +|.++.....|+-.|++.|+.+...+-|.. |.-+.+.|+.++ -+.|-.|..|.-||.+-...
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------ 416 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------ 416 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------
Confidence 444 445566667899999999999999987766 777788886542 23455677888888861100
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
..+.|... + .+. ......|.+-..+
T Consensus 417 -----------~kl~~~q~-k---------------------------qy~-~k~nFsc~aTT~s--------------- 441 (644)
T KOG2395|consen 417 -----------NKLAVVQS-K---------------------------QYS-TKNNFSCFATTES--------------- 441 (644)
T ss_pred -----------ceeeeeec-c---------------------------ccc-cccccceeeecCC---------------
Confidence 00111000 0 000 0112233333333
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.+|++|+.+|.|++||- .++.-.+...+...+|..+..+.||++|++.+ +..+.+.+..
T Consensus 442 -------------------G~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 442 -------------------GYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred -------------------ceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 48999999999999997 56555555556688999999999999988776 6677777754
No 383
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.32 E-value=0.69 Score=46.36 Aligned_cols=210 Identities=11% Similarity=0.139 Sum_probs=126.8
Q ss_pred eecCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCEE
Q 040062 3 AEKPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRYI 81 (689)
Q Consensus 3 ~~k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~L 81 (689)
++++...+-.. -|.++.|+|+.+.|.+-.....-.||=... +..++++.- .-..--.++|..+|++.
T Consensus 76 i~akpi~g~~~-nvS~LTynp~~rtLFav~n~p~~iVElt~~-----------GdlirtiPL~g~~DpE~Ieyig~n~fv 143 (316)
T COG3204 76 IDAKPILGETA-NVSSLTYNPDTRTLFAVTNKPAAIVELTKE-----------GDLIRTIPLTGFSDPETIEYIGGNQFV 143 (316)
T ss_pred Eeccccccccc-cccceeeCCCcceEEEecCCCceEEEEecC-----------CceEEEecccccCChhHeEEecCCEEE
Confidence 44555555553 599999999998887777666666664443 677776641 12234567888889888
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-CCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC- 159 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~- 159 (689)
++--.++.+.++.++.+.....+.. .+.......+ ......++|.|....|..+=.-.-+.||.+.....
T Consensus 144 i~dER~~~l~~~~vd~~t~~~~~~~--------~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~ 215 (316)
T COG3204 144 IVDERDRALYLFTVDADTTVISAKV--------QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSS 215 (316)
T ss_pred EEehhcceEEEEEEcCCccEEeccc--------eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcc
Confidence 8888899999999887643322210 0111111123 56788999999999999888888777777653321
Q ss_pred --EEEEecC-------CCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccc---cCCcccEEEEEEcCC
Q 040062 160 --TAVLRGH-------SSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK---SLGSTFFRRLGWSPC 226 (689)
Q Consensus 160 --~~~l~~h-------~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~i~~l~~spd 226 (689)
+.....+ -..|.++.|++. +.+|+-+.+++.+.-.|.... .+..+...... .........++..++
T Consensus 216 l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~-~~~~lsL~~g~~gL~~dipqaEGiamDd~ 294 (316)
T COG3204 216 LSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE-VIELLSLTKGNHGLSSDIPQAEGIAMDDD 294 (316)
T ss_pred cccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC-eeeeEEeccCCCCCcccCCCcceeEECCC
Confidence 1111111 135678889874 456666777777777777543 23322221111 111222455666666
Q ss_pred CCeEEEe
Q 040062 227 GHFITTT 233 (689)
Q Consensus 227 g~~l~~~ 233 (689)
|..-+++
T Consensus 295 g~lYIvS 301 (316)
T COG3204 295 GNLYIVS 301 (316)
T ss_pred CCEEEEe
Confidence 6655443
No 384
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.22 E-value=0.065 Score=61.76 Aligned_cols=102 Identities=18% Similarity=0.279 Sum_probs=76.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
.+..++.|+..|.+...|+..+- .....=..-..+|++++|+.||+.++.|-.+|.|.+||+..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL----------------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~ 161 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNL----------------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHR 161 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhccc----------------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccC
Confidence 35578889888999888876541 11111122457899999999999999999999999999999
Q ss_pred CeEEEEEecCCCCeEEEE---EccCCCEEEEEeCCCeEEEEEC
Q 040062 157 GICTAVLRGHSSLVKGVA---WDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~---~spdg~~las~s~Dg~I~iwd~ 196 (689)
+..++.+..|..+..++- +..++..++++...|. +|.+
T Consensus 162 ~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 162 AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999998887776665553 4445667888877775 6654
No 385
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.20 E-value=0.24 Score=51.99 Aligned_cols=148 Identities=8% Similarity=0.112 Sum_probs=92.7
Q ss_pred CCEEEEEeC----------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 25 ALRFATGGG----------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 25 g~~Latgs~----------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
..+|++|.. .|.|.++++.... ......+.+... ...++|++++-. ++. |+.+. .+.|.+|+
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~----~~~~~l~~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~ 113 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESP----ENNFKLKLIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYD 113 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------EEEEEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEccc----ccceEEEEEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEE
Confidence 578888853 2899999998620 000122333333 357889999877 444 44443 47899999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEEe--cCCCCeE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAVLR--GHSSLVK 171 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~l~--~h~~~V~ 171 (689)
+.... .+.....+.. ...+.++... ++++++|.....|.++.... ...+..+. .....+.
T Consensus 114 l~~~~--------------~l~~~~~~~~-~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~ 176 (321)
T PF03178_consen 114 LDNSK--------------TLLKKAFYDS-PFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVT 176 (321)
T ss_dssp EETTS--------------SEEEEEEE-B-SSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEE
T ss_pred ccCcc--------------cchhhheecc-eEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEE
Confidence 98763 1233333333 3367777765 55999999888888875543 33233332 2345688
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
++.|-++++.++.++.+|.+.++...
T Consensus 177 ~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 177 AAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 88888677799999999999999874
No 386
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.12 E-value=0.92 Score=47.77 Aligned_cols=71 Identities=13% Similarity=0.133 Sum_probs=43.6
Q ss_pred CCCeEEEEEcc-------CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHh
Q 040062 337 TQSVVDLSWSP-------DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEA 409 (689)
Q Consensus 337 ~~~V~~l~~sp-------dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las 409 (689)
...+..+.|-. .|.+|++.-..+.|...+++.+....... ..+.....++..+++.|||.++++
T Consensus 252 ~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~---------~~~~~~~~r~~~v~~~pDG~Lyv~ 322 (331)
T PF07995_consen 252 HSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEE---------EFLGGFGGRPRDVAQGPDGALYVS 322 (331)
T ss_dssp T--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---------EECTTSSS-EEEEEEETTSEEEEE
T ss_pred ccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceE---------EccccCCCCceEEEEcCCCeEEEE
Confidence 35677777764 35566666556788888887442211110 222344458999999999999888
Q ss_pred hccccce
Q 040062 410 ASAKETT 416 (689)
Q Consensus 410 ~s~DG~v 416 (689)
.+.+|.|
T Consensus 323 ~d~~G~i 329 (331)
T PF07995_consen 323 DDSDGKI 329 (331)
T ss_dssp E-TTTTE
T ss_pred ECCCCeE
Confidence 8888876
No 387
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.07 E-value=4.1 Score=47.33 Aligned_cols=306 Identities=12% Similarity=0.131 Sum_probs=155.3
Q ss_pred ceEEEEEEcCCC------CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee----cCCCCcEEEEEEcCCCCEEEE
Q 040062 14 MQIFSIDVQPGA------LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL----RDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 14 ~~I~si~~spdg------~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~v~fspdg~~Las 83 (689)
..|.|++++|-| +++++|..+..+.+--.... ...+... ..-...|.-..|-.|..||.+
T Consensus 531 ~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd----------~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlv 600 (1096)
T KOG1897|consen 531 YEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPD----------LILITHEQLSGEIIPRSILLTTFEGDIHYLLV 600 (1096)
T ss_pred ceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCC----------cceeeeeccCCCccchheeeEEeeccceEEEE
Confidence 479999999853 27888887665554433320 1222211 112345666677777899999
Q ss_pred EeCCCeEEEEEcCCCCCcc------ccCCCCCCCcccceEEEEEecCC-CCEE--------------EEEEcC-------
Q 040062 84 GSDDQVILIHEKKPGSGTT------EFGSGEPPDIENWKVAMTLRGHT-ADVV--------------DLNWSP------- 135 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~------~~~~~~~~~~~~~~~~~~l~~h~-~~V~--------------~l~~sp------- 135 (689)
+..||.+..|-++...+.. .++. .|+ .++++.... ..|. .+.|+|
T Consensus 601 algdG~l~~fv~d~~tg~lsd~Kk~~lGt-~P~------~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~ 673 (1096)
T KOG1897|consen 601 ALGDGALLYFVLDINTGQLSDRKKVTLGT-QPI------SLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN 673 (1096)
T ss_pred EcCCceEEEEEEEcccceEccccccccCC-CCc------EEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh
Confidence 9999999887776553221 1111 111 111111100 0011 111221
Q ss_pred -------C--CCEEEEEeCCCeEEEEEcCCCeE--EEEEecCCCCeEEEEEccCCCEEEEEeCC--------------Ce
Q 040062 136 -------D--DSILASGSLDNTIHIWNMSTGIC--TAVLRGHSSLVKGVAWDPIGSFIASQSDD--------------KT 190 (689)
Q Consensus 136 -------d--g~~Lasgs~Dg~I~vwd~~~~~~--~~~l~~h~~~V~~l~~spdg~~las~s~D--------------g~ 190 (689)
+ ...|+++. .+.+++.-+..-+. ++++. -......+++.+....+.+.+.. ..
T Consensus 674 ~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~ 751 (1096)
T KOG1897|consen 674 HMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVP-LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSF 751 (1096)
T ss_pred hhcccccccCCceEEEec-CCceEEEEecchhhcceeeec-CCCChhheEecccceEEEEEecccccchhhcCCcceEEE
Confidence 1 11333333 34555555543222 22332 23345667777644444443321 14
Q ss_pred EEEEECCCCcceeeccCcccccCCcccEEEEEEcCC-CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEE
Q 040062 191 VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC-GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKF 269 (689)
Q Consensus 191 I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~f 269 (689)
++++|-++.+.....+.... .....+.++.|..| +.+++++.+...+... ..-.+.+....|
T Consensus 752 l~vlD~nTf~vl~~hef~~~--E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~---------------ep~~GRIivfe~ 814 (1096)
T KOG1897|consen 752 LRVLDQNTFEVLSSHEFERN--ETALSIISCKFTDDPNTYYVVGTGLVYPDEN---------------EPVNGRIIVFEF 814 (1096)
T ss_pred EEEecCCceeEEeecccccc--ceeeeeeeeeecCCCceEEEEEEEeeccCCC---------------CcccceEEEEEE
Confidence 67777777766654432211 11223566678877 6777776542111100 011223333333
Q ss_pred cCCc-cccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccC
Q 040062 270 NHSM-FRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPD 348 (689)
Q Consensus 270 sp~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 348 (689)
...+ ..+.. ... ....+.... --+++++| +-...|++|+..+.+.++.-. .+..++..+...-.
T Consensus 815 ~e~~~L~~v~--e~~---------v~Gav~aL~-~fngkllA--~In~~vrLye~t~~~eLr~e~-~~~~~~~aL~l~v~ 879 (1096)
T KOG1897|consen 815 EELNSLELVA--ETV---------VKGAVYALV-EFNGKLLA--GINQSVRLYEWTTERELRIEC-NISNPIIALDLQVK 879 (1096)
T ss_pred ecCCceeeee--eee---------eccceeehh-hhCCeEEE--ecCcEEEEEEccccceehhhh-cccCCeEEEEEEec
Confidence 3310 00000 000 000000000 00234444 455689999998887766543 45778999999999
Q ss_pred CCeEEEEeCCCcEEEEEeeccc
Q 040062 349 GYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 349 g~~L~sgs~DG~I~vwd~~~~~ 370 (689)
|..+++|..-++|.+..+...+
T Consensus 880 gdeI~VgDlm~Sitll~y~~~e 901 (1096)
T KOG1897|consen 880 GDEIAVGDLMRSITLLQYKGDE 901 (1096)
T ss_pred CcEEEEeeccceEEEEEEeccC
Confidence 9999999999999887776544
No 388
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.01 E-value=1.8 Score=43.45 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=81.4
Q ss_pred ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC-CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 040062 122 RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH-SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200 (689)
Q Consensus 122 ~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~ 200 (689)
.+-...+.+|.|+|+.+.|++......-.||=..+|+.+.++.-. -...-.|.|..+|+|.++--.++.+.++.+....
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence 344556999999999999999888888888877789998887532 1334568888888888888889999998876543
Q ss_pred ceeeccC---cccccCC-cccEEEEEEcCCCCeEEEecC
Q 040062 201 LAHRTDG---HWAKSLG-STFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 201 ~~~~~~~---~~~~~~~-~~~i~~l~~spdg~~l~~~~~ 235 (689)
....... ....... ...+..++|+|..+.+..+-.
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKE 200 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKE 200 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEc
Confidence 3222211 1111111 344889999999998888754
No 389
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.97 E-value=0.1 Score=55.70 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=94.8
Q ss_pred EEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC--E-----EEEEeCCCeEEEEEcCCCCCcc
Q 040062 30 TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR--Y-----IASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 30 tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~--~-----Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
++.....++-.|++. ++.+....-|.. |+-+.+.|+.+ . -+.|-.|..|+-||.+-...
T Consensus 351 ~~~~~~~l~klDIE~-----------GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~-- 416 (644)
T KOG2395|consen 351 DGGEQDKLYKLDIER-----------GKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK-- 416 (644)
T ss_pred CCCCcCcceeeeccc-----------ceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc--
Confidence 344445566666665 888888887766 77788888654 2 23455678889999874321
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
+.-.|...+.+. ......|.+-..+| ++++|+.+|.|++||--....-..+.+...+|..|..+.+|++|
T Consensus 417 --------~kl~~~q~kqy~-~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwi 486 (644)
T KOG2395|consen 417 --------NKLAVVQSKQYS-TKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWI 486 (644)
T ss_pred --------ceeeeeeccccc-cccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEE
Confidence 112223333332 23346666665544 79999999999999973333344567788999999999999998
Q ss_pred EEEeCCCeEEEEEC
Q 040062 183 ASQSDDKTVIIWRT 196 (689)
Q Consensus 183 as~s~Dg~I~iwd~ 196 (689)
+..+.. .+.+.++
T Consensus 487 l~Tc~t-yLlLi~t 499 (644)
T KOG2395|consen 487 LATCKT-YLLLIDT 499 (644)
T ss_pred EEeccc-EEEEEEE
Confidence 877654 6777765
No 390
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.89 E-value=1.9 Score=50.41 Aligned_cols=120 Identities=10% Similarity=0.090 Sum_probs=71.8
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc----------------CCCCEEE
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS----------------PDDSILA 141 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s----------------pdg~~La 141 (689)
+..|..++.++.|.-.|..+++..-.+......... + .| ..+..+++. ..+..++
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~-~-------~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~ 264 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAG-R-------QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRII 264 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccc-c-------cc-ccccceEEecCCcccccccccccccccCCEEE
Confidence 556777788888988898888655444322211100 0 00 001112221 1244788
Q ss_pred EEeCCCeEEEEEcCCCeEEEEEecCCCCeE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEEC
Q 040062 142 SGSLDNTIHIWNMSTGICTAVLRGHSSLVK-------------GVAWDP--IGSFIASQSD----------DKTVIIWRT 196 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--dg~~las~s~----------Dg~I~iwd~ 196 (689)
.++.|+.|.-.|.++|+.+..+. ..+.|. .+.-.| .+..+++++. +|.|+-+|.
T Consensus 265 ~~T~Dg~LiALDA~TGk~~W~fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da 343 (764)
T TIGR03074 265 LPTSDARLIALDADTGKLCEDFG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDV 343 (764)
T ss_pred EecCCCeEEEEECCCCCEEEEec-CCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEEC
Confidence 88899999999999999987764 222211 111122 2345555542 688999999
Q ss_pred CCCcceeeccC
Q 040062 197 SDWSLAHRTDG 207 (689)
Q Consensus 197 ~~~~~~~~~~~ 207 (689)
++++++..+..
T Consensus 344 ~TGkl~W~~~~ 354 (764)
T TIGR03074 344 NTGALVWAWDP 354 (764)
T ss_pred CCCcEeeEEec
Confidence 99999887764
No 391
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.71 E-value=3.8 Score=44.20 Aligned_cols=156 Identities=13% Similarity=0.166 Sum_probs=92.6
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEEEEcCCCC
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-----HGRYIASGSDDQVILIHEKKPGS 99 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-----dg~~Lasgs~Dg~I~iwdl~~~~ 99 (689)
...|++|+.+|.++||+..... +. ...++-.. .-..+|..|+.-. +...||. =.-..+.||.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~--~~----~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNE--FQ----PEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEeccccEEEEEccCCCC--CC----CccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecC
Confidence 3689999999999999985411 00 01122222 2446788887643 2234444 455778888884432
Q ss_pred CccccCCCCCCCcccceEEEEEecCC--CCEEEEEEcC----C-CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 100 GTTEFGSGEPPDIENWKVAMTLRGHT--ADVVDLNWSP----D-DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~l~~sp----d-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
+... .-..++ +..+..|. .....+++-+ . ..++++-+.||.+.+|+-+.......+.. .--...
T Consensus 109 g~~~-------~g~~~~-L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgP 179 (418)
T PF14727_consen 109 GTVE-------HGNQYQ-LELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGP 179 (418)
T ss_pred CCcc-------cCcEEE-EEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcC
Confidence 2111 111122 22222333 2233333322 2 35788889999999999766554444443 333345
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECC
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
++|.+.-..|++++.+..|..|...
T Consensus 180 l~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 180 LCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eEEeecCCEEEEecCceeEEEecHH
Confidence 7888988899999999999999753
No 392
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.68 E-value=0.66 Score=46.80 Aligned_cols=148 Identities=18% Similarity=0.217 Sum_probs=89.6
Q ss_pred ceEEEEEEcCCCCEEEEEe---CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQPGALRFATGG---GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs---~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..+.+.++++||+.+|.-. ....++++.... .....+.+ ..+..-.|++++...+....+...
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~------------~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~ 89 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG------------PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGV 89 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCC------------cceeeccC--CccccccccCCCCEEEEEcCCCce
Confidence 3699999999999887665 334555555432 11111222 367888999998877776666666
Q ss_pred EEEE-cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe---CCCeEEEEEcC---CC------
Q 040062 91 LIHE-KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS---LDNTIHIWNMS---TG------ 157 (689)
Q Consensus 91 ~iwd-l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs---~Dg~I~vwd~~---~~------ 157 (689)
+++. ...+... ........-...|..+.+||||..++... .++.|.+--+. .+
T Consensus 90 ~~~~~~~~g~~~--------------~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~ 155 (253)
T PF10647_consen 90 RVVRDSASGTGE--------------PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLT 155 (253)
T ss_pred EEEEecCCCcce--------------eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceec
Confidence 7664 2222110 01111111112899999999999777665 35677776543 22
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEEeCCC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK 189 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg 189 (689)
..+.........+..+.|.+++.+++.+...+
T Consensus 156 ~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~ 187 (253)
T PF10647_consen 156 GPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAG 187 (253)
T ss_pred cceEecccccCcceeeeecCCCEEEEEeCCCC
Confidence 11122223356889999999998777665443
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.68 E-value=0.069 Score=61.81 Aligned_cols=161 Identities=13% Similarity=0.047 Sum_probs=102.3
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC-CEEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG-RYIAS 83 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg-~~Las 83 (689)
.+.-|...+|..+...+|+...++-.. +-.|..||+..............+.-++.........++.|+|.- ...+.
T Consensus 94 t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av 173 (1405)
T KOG3630|consen 94 TFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAV 173 (1405)
T ss_pred ceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhh
Confidence 444565568888888999876655443 337899999864322111000011111222334567889999853 34566
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
+..|+.|++..+.... ..+.. .......++++|+|.|+.|+.|-..|++.-|... .+....+
T Consensus 174 ~l~dlsl~V~~~~~~~----------------~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~i 235 (1405)
T KOG3630|consen 174 DLSDLSLRVKSTKQLA----------------QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEI 235 (1405)
T ss_pred hccccchhhhhhhhhh----------------hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecc
Confidence 7788889888765431 11111 2345678999999999999999999999999763 3333333
Q ss_pred ec----CCCCeEEEEEccCCCEEEEE
Q 040062 164 RG----HSSLVKGVAWDPIGSFIASQ 185 (689)
Q Consensus 164 ~~----h~~~V~~l~~spdg~~las~ 185 (689)
.+ ....|.+|+|.....++++-
T Consensus 236 p~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 236 PEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred cCCCcCCCcceeEEEEecceeEEEEe
Confidence 22 24789999999777776653
No 394
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.60 E-value=0.61 Score=49.96 Aligned_cols=152 Identities=13% Similarity=0.183 Sum_probs=82.4
Q ss_pred eEEEEEEcCCCCEEEEEe-----------CCC-eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE
Q 040062 15 QIFSIDVQPGALRFATGG-----------GDH-KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA 82 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs-----------~Dg-~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La 82 (689)
....|+|.++|+++++-. ..+ .|.+++-....- .......+.......+.++|.++| +++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG-------~~d~~~vfa~~l~~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDG-------KYDKSNVFAEELSMVTGLAVAVGG-VYV 86 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCC-------CcceeEEeecCCCCccceeEecCC-EEE
Confidence 467899999999877643 123 677775432110 111222333334456889999998 444
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccce-EEEEEec----CCCCEEEEEEcCCCCEEEEEeC------------
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWK-VAMTLRG----HTADVVDLNWSPDDSILASGSL------------ 145 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~-~~~~l~~----h~~~V~~l~~spdg~~Lasgs~------------ 145 (689)
+ +.....++.|.+..... +. ..+ .+..+.. +......++|.|||.+.++.+.
T Consensus 87 ~-~~~~i~~~~d~~gdg~a---------d~-~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~ 155 (367)
T TIGR02604 87 A-TPPDILFLRDKDGDDKA---------DG-EREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTS 155 (367)
T ss_pred e-CCCeEEEEeCCCCCCCC---------CC-ccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCc
Confidence 4 44443334344322100 00 001 2222322 2345788999999986665442
Q ss_pred -------CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe
Q 040062 146 -------DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 146 -------Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s 186 (689)
.+.|.-+|...++....-.++ ....+++|+++|+++++-.
T Consensus 156 ~~~~~~~~g~i~r~~pdg~~~e~~a~G~-rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 156 DESRQGLGGGLFRYNPDGGKLRVVAHGF-QNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCcccccCceEEEEecCCCeEEEEecCc-CCCccceECCCCCEEEEcc
Confidence 145666666555443323333 3346899999998876644
No 395
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.54 E-value=2 Score=41.54 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=66.8
Q ss_pred EEEEEEcCCCCEEE-EEeCCCeEEEEE--cCCC-----eEEEEEec----CCCCeEEEEEccCCCEEEEEeCCCeEEEEE
Q 040062 128 VVDLNWSPDDSILA-SGSLDNTIHIWN--MSTG-----ICTAVLRG----HSSLVKGVAWDPIGSFIASQSDDKTVIIWR 195 (689)
Q Consensus 128 V~~l~~spdg~~La-sgs~Dg~I~vwd--~~~~-----~~~~~l~~----h~~~V~~l~~spdg~~las~s~Dg~I~iwd 195 (689)
-..|+|+.+.+.+. .-+.+-.|.-|| ..+| +.+..++. ..-..-+++.+.+|++.++.-..++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 45788988777544 456677887787 4444 33333332 112234677788899998888999999999
Q ss_pred CCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 196 TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
..+++.+.++..+... +++++|--.
T Consensus 240 p~tGK~L~eiklPt~q------itsccFgGk 264 (310)
T KOG4499|consen 240 PTTGKILLEIKLPTPQ------ITSCCFGGK 264 (310)
T ss_pred CCCCcEEEEEEcCCCc------eEEEEecCC
Confidence 9999999999877554 889999755
No 396
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.51 E-value=0.054 Score=62.38 Aligned_cols=103 Identities=17% Similarity=0.280 Sum_probs=72.8
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
-.+..++.|+..|.|...|+.. .-..+..-..-.++|++++|+.+|+.++.|-.+|.|.+||...+
T Consensus 97 ~~~~~ivi~Ts~ghvl~~d~~~----------nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---- 162 (1206)
T KOG2079|consen 97 IVVVPIVIGTSHGHVLLSDMTG----------NLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---- 162 (1206)
T ss_pred eeeeeEEEEcCchhhhhhhhhc----------ccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC----
Confidence 3455788888889999988864 11111222234578999999999999999999999999999987
Q ss_pred ccCCCCCCCcccceEEEEEecCCCCEEE---EEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 103 EFGSGEPPDIENWKVAMTLRGHTADVVD---LNWSPDDSILASGSLDNTIHIWNM 154 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~---l~~spdg~~Lasgs~Dg~I~vwd~ 154 (689)
+..+.+..|..+.+. +.|..+++.++++...|. +|.+
T Consensus 163 -------------k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 -------------KILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred -------------cceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 455555555554443 444556667888877776 5543
No 397
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.49 E-value=3.1 Score=41.70 Aligned_cols=194 Identities=13% Similarity=0.080 Sum_probs=108.7
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
-.+.+|.|.-|..++..-+-.++..|- .+.+.|+..... ....-++..+ .-.+-+..++++ +++...+.
T Consensus 35 ~~~vghfg~~vsavdv~~~ya~v~qG~---~l~i~ditn~~~-----~t~~~l~~~i-~~~~l~~Dv~vs--e~yvyvad 103 (370)
T COG5276 35 YAYVGHFGKGVSAVDVRGAYAYVGQGF---ILAILDITNVSL-----QTHDVLLSVI-NARDLFADVRVS--EEYVYVAD 103 (370)
T ss_pred eEEeeeccCCcccccccccccccccCc---eEeeccccCccc-----ccCcceEEEE-ehhhhhheeEec--ccEEEEEc
Confidence 456677766677776665444443332 233334332100 0001222222 234557778887 45677777
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---eEEEE
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG---ICTAV 162 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~---~~~~~ 162 (689)
.+.-++|.|+.+.... .....+. ..+--.++.. .|+++.++..|.-+.+.|+.+. .....
T Consensus 104 ~ssGL~IvDIS~P~sP--------------~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~lagr 166 (370)
T COG5276 104 WSSGLRIVDISTPDSP--------------TLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGR 166 (370)
T ss_pred CCCceEEEeccCCCCc--------------ceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeee
Confidence 7888999999876321 1222222 1122334444 5889999988888888888764 33444
Q ss_pred EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+......-..++.+ |++-..+..|+-+.|-|+.+......+. +... ...+.++..+++-.+++..
T Consensus 167 ya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~-~~n~---g~g~~sv~vsdnr~y~vvy 231 (370)
T COG5276 167 YALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIG-SYNT---GPGTYSVSVSDNRAYLVVY 231 (370)
T ss_pred eccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEE-EEec---CCceEEEEecCCeeEEEEc
Confidence 44444444556665 7888888889999999997644322221 1111 1136677777776666554
No 398
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.46 E-value=0.05 Score=52.17 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=63.8
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEE-EEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNC-VRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
+..+++|+.+|.|.+|+.... +........-...|.+ |.--.++.+..+++.||.|+.|++..+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~----------g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~----- 134 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLE----------GAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN----- 134 (238)
T ss_pred CceEEeecccceEEEecCCcc----------chHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC-----
Confidence 356888999999999997631 1111112112223333 222335668889999999999999877
Q ss_pred cCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEE--eCCCeEEEEEcCC
Q 040062 104 FGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASG--SLDNTIHIWNMST 156 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasg--s~Dg~I~vwd~~~ 156 (689)
+.+-....|. .++..+..+..+..|+.+ +.|..++.|++..
T Consensus 135 ------------k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 135 ------------KVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ------------ceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 4555555666 444444444445555555 5566666666543
No 399
>PHA02713 hypothetical protein; Provisional
Probab=95.42 E-value=1.6 Score=49.51 Aligned_cols=93 Identities=12% Similarity=-0.013 Sum_probs=47.4
Q ss_pred CCCEEEEEeCC------CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC---
Q 040062 77 HGRYIASGSDD------QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN--- 147 (689)
Q Consensus 77 dg~~Lasgs~D------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg--- 147 (689)
++...+.|+.+ ..+..||..++ .|.....+...........+ ++++.+.||.++
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n---------------~W~~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~ 365 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENK---------------IHVELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNV 365 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCC---------------eEeeCCCCcchhhceeEEEE--CCEEEEECCcCCCCC
Confidence 56677777753 23666776554 24333332211112222222 677778887654
Q ss_pred --eEEEEEcCCCeEEE--EEecCCCCeEEEEEccCCCEEEEEeCC
Q 040062 148 --TIHIWNMSTGICTA--VLRGHSSLVKGVAWDPIGSFIASQSDD 188 (689)
Q Consensus 148 --~I~vwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~las~s~D 188 (689)
.+.+||..+.+... .+.........+. -+++..+.|+.+
T Consensus 366 ~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~ 408 (557)
T PHA02713 366 ERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRT 408 (557)
T ss_pred CceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCC
Confidence 48889988764332 1211111111222 257777777654
No 400
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.40 E-value=0.78 Score=44.29 Aligned_cols=99 Identities=12% Similarity=0.150 Sum_probs=66.6
Q ss_pred cEEEEEEcCCCCEEE-EEeCCCeEEEEE--cCCCCCccccCCCCCCCcccceEEEEEec----CCCCEEEEEEcCCCCEE
Q 040062 68 SVNCVRWAKHGRYIA-SGSDDQVILIHE--KKPGSGTTEFGSGEPPDIENWKVAMTLRG----HTADVVDLNWSPDDSIL 140 (689)
Q Consensus 68 ~V~~v~fspdg~~La-sgs~Dg~I~iwd--l~~~~~~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~l~~spdg~~L 140 (689)
--+.++|+.+.+.+. .-+.+-.|.-|| ..++. +.+-+.+..++. ....--.++...+|.+.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~------------~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~ 226 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGD------------LSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLY 226 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCccc------------ccCcceeEEeccCCCcCCCCCCcceEccCCcEE
Confidence 346788987766544 445677787788 44442 111123333322 11112234445578888
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccC
Q 040062 141 ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPI 178 (689)
Q Consensus 141 asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spd 178 (689)
+++-..++|...|..+|+.+..++-....|+++||--.
T Consensus 227 Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk 264 (310)
T KOG4499|consen 227 VATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK 264 (310)
T ss_pred EEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence 88888999999999999999999989999999999743
No 401
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.25 E-value=2.5 Score=42.22 Aligned_cols=129 Identities=9% Similarity=0.010 Sum_probs=79.4
Q ss_pred eeeeeec-CCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEE
Q 040062 57 RLLATLR-DHFGSVNCVRWAKHGRYIASGSDDQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLN 132 (689)
Q Consensus 57 ~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~ 132 (689)
+.+.++. ....-...+.|..+|.++-+.+.-| .|+.+|+.+++ ......- ...--..++
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~-----------------~~~~~~l~~~~FgEGit 96 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK-----------------VLQSVPLPPRYFGEGIT 96 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS-----------------EEEEEE-TTT--EEEEE
T ss_pred EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc-----------------EEEEEECCccccceeEE
Confidence 4444444 2234567888977888888888776 68999999874 2222111 111122233
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 133 WSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 133 ~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.. ++++..-.-.++...+||..+.+.+..+. ..+.=++++ .+++.|+.+.....|+++|..+++....+.
T Consensus 97 ~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 97 IL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EE-TTEEEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred EE-CCEEEEEEecCCeEEEEccccceEEEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE
Confidence 33 23344444568899999999999999887 445668888 456666666666689999998887766654
No 402
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.24 E-value=0.76 Score=45.69 Aligned_cols=180 Identities=11% Similarity=0.108 Sum_probs=102.4
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeC-----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGG-----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR 79 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~-----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~ 79 (689)
...|++|. .|||||.+|...-. -|.|-|||... ....+..+..|.-.-..+.|.+||+
T Consensus 112 ~RHfyGHG-------vfs~dG~~LYATEndfd~~rGViGvYd~r~----------~fqrvgE~~t~GiGpHev~lm~DGr 174 (366)
T COG3490 112 GRHFYGHG-------VFSPDGRLLYATENDFDPNRGVIGVYDARE----------GFQRVGEFSTHGIGPHEVTLMADGR 174 (366)
T ss_pred Cceeeccc-------ccCCCCcEEEeecCCCCCCCceEEEEeccc----------ccceecccccCCcCcceeEEecCCc
Confidence 34466665 58999999876533 38899999875 3556667777877778899999999
Q ss_pred EEEEEeCCCeEEEE-E-------cCCCCCccccCCCCCCCcccceEEEEEe--cCCCCEEEEEEcCCCCEEEEEeCCCe-
Q 040062 80 YIASGSDDQVILIH-E-------KKPGSGTTEFGSGEPPDIENWKVAMTLR--GHTADVVDLNWSPDDSILASGSLDNT- 148 (689)
Q Consensus 80 ~Lasgs~Dg~I~iw-d-------l~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~spdg~~Lasgs~Dg~- 148 (689)
.|+.+. |-|... | +++.+....+-.. ..-+.-...++. .+...|..++..+||..++-+-..|.
T Consensus 175 tlvvan--GGIethpdfgR~~lNldsMePSlvlld~---atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~ 249 (366)
T COG3490 175 TLVVAN--GGIETHPDFGRTELNLDSMEPSLVLLDA---ATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPR 249 (366)
T ss_pred EEEEeC--CceecccccCccccchhhcCccEEEEec---cccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCC
Confidence 988764 334333 1 1111100000000 000000111122 24456888888888877666544331
Q ss_pred ----EEEEEcCCCeEEEEEec-------CCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeecc
Q 040062 149 ----IHIWNMSTGICTAVLRG-------HSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 149 ----I~vwd~~~~~~~~~l~~-------h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~ 206 (689)
-.+=....++.+..+.. ....|-+|+.+-+..+++..+ ..+...+||..++..+....
T Consensus 250 ~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~ 319 (366)
T COG3490 250 NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA 319 (366)
T ss_pred ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc
Confidence 11111223344333321 235677788876555555554 55568899999988766543
No 403
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.19 E-value=5.5 Score=46.71 Aligned_cols=145 Identities=14% Similarity=0.168 Sum_probs=77.2
Q ss_pred ecCceeeecCceE-------EEEEEcC--CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC-------
Q 040062 4 EKPSWVRHEGMQI-------FSIDVQP--GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG------- 67 (689)
Q Consensus 4 ~k~~~~~H~g~~I-------~si~~sp--dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~------- 67 (689)
.+..|..|.|+.. .....+| .+..|.+++.++.|.-.|..+ ++.+-++.....
T Consensus 164 L~~aWt~~tGd~~~~~~~~~~~~e~TPlvvgg~lYv~t~~~~V~ALDa~T-----------Gk~lW~~d~~~~~~~~~~~ 232 (764)
T TIGR03074 164 LKVAWTYHTGDLKTPDDPGEATFQATPLKVGDTLYLCTPHNKVIALDAAT-----------GKEKWKFDPKLKTEAGRQH 232 (764)
T ss_pred ceEEEEEECCCccccccccccccccCCEEECCEEEEECCCCeEEEEECCC-----------CcEEEEEcCCCCccccccc
Confidence 4567777775322 1233344 345677778888888888877 344433322111
Q ss_pred -cEEEEEEc----------------CCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE
Q 040062 68 -SVNCVRWA----------------KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130 (689)
Q Consensus 68 -~V~~v~fs----------------pdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 130 (689)
....+.+. .++..++.++.|+.+.-.|.++++....|..+...+ |+ ..+..+...-..
T Consensus 233 ~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vd---l~--~~~g~~~~g~~~ 307 (764)
T TIGR03074 233 QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIALDADTGKLCEDFGNNGTVD---LT--AGMGTTPPGYYY 307 (764)
T ss_pred ccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEEECCCCCEEEEecCCCcee---ee--cccCcCCCcccc
Confidence 01112221 134578888899999999999986554443322111 00 000000000000
Q ss_pred EEEcC--CCCEEEEEeC----------CCeEEEEEcCCCeEEEEEe
Q 040062 131 LNWSP--DDSILASGSL----------DNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 131 l~~sp--dg~~Lasgs~----------Dg~I~vwd~~~~~~~~~l~ 164 (689)
+.-.| .+..+++++. +|.|+-+|.++|+.+..+.
T Consensus 308 ~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 308 PTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred cccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 11111 1334555532 6889999999999988775
No 404
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.10 E-value=0.077 Score=37.87 Aligned_cols=35 Identities=29% Similarity=0.590 Sum_probs=30.7
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL 201 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~ 201 (689)
....|.+++|+|...+||.++.||.|.+|++ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3467999999999999999999999999999 5554
No 405
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.06 E-value=2 Score=47.12 Aligned_cols=121 Identities=13% Similarity=0.208 Sum_probs=74.6
Q ss_pred CcEEEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec---CCCCEEEEEEcCCCCE
Q 040062 67 GSVNCVRWAKH----GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG---HTADVVDLNWSPDDSI 139 (689)
Q Consensus 67 ~~V~~v~fspd----g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~l~~spdg~~ 139 (689)
..|..+.|.|- -..|++....+.|.||.+..... +...|-..++..- ..---..+.|+|....
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~----------e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~i 126 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT----------ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAI 126 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc----------ccccceeeeeeeccCCcccCCCcccccCCCce
Confidence 45899999984 22455556778999999874311 1112222222111 1111356789999888
Q ss_pred EEEEeCCCeEEEEEcCCC--eEEEEEecCCCCeEEEEEccCCCEEEEEeCC-CeEEEEECCC
Q 040062 140 LASGSLDNTIHIWNMSTG--ICTAVLRGHSSLVKGVAWDPIGSFIASQSDD-KTVIIWRTSD 198 (689)
Q Consensus 140 Lasgs~Dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~las~s~D-g~I~iwd~~~ 198 (689)
|++-.....-.+++++.. .....+ ...+.|.|.+|..||+.|+++-.. =.-+|||-..
T Consensus 127 L~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 127 LTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred EEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 887776665566676532 233334 367899999999999887765433 3457887544
No 406
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.99 E-value=0.3 Score=56.92 Aligned_cols=209 Identities=9% Similarity=0.024 Sum_probs=115.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcc-----cceeeeeecCC-CCcEEEEEEcCCCCEEEE--EeCCC
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDES-----TQRLLATLRDH-FGSVNCVRWAKHGRYIAS--GSDDQ 88 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~-----~~~~~~~l~~h-~~~V~~v~fspdg~~Las--gs~Dg 88 (689)
..++.++.-..+++++..+.+.|+-............. .......+.-| .-.+..+..++|++..+. .+.+-
T Consensus 45 n~la~sn~ysl~Fa~~nsk~L~vfgtknlLi~~it~D~~n~~Vd~~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~ 124 (1405)
T KOG3630|consen 45 NNLAISNSYSLFFAASNSKSLAVFGTKNLLIDHITSDSTNSLVDADENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGE 124 (1405)
T ss_pred hhhhcccccceEEEecCCcceeeeccccceeecccccccccccccccccceeeeccccceEEEeccCCceEEEEEecCCc
Confidence 34555665555555555566666654432110000000 01111222223 235666666777665443 34445
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.|..||+..-....... ..-+..............++.|+|.-. ..+++..|+.|++..+........--.-.
T Consensus 125 ~v~~fD~~~fs~s~~~~------~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t 198 (1405)
T KOG3630|consen 125 AVYSFDLEEFSESRYET------TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT 198 (1405)
T ss_pred eEEEEehHhhhhhhhhh------ccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc
Confidence 78899987642110000 000011111222234467888988643 56677789999998875433222211245
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
...++++|+|.|+.++.|...|++.-|.. ..+....+..+. ......+.+++|...-.++++-.
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P-~leik~~ip~Pp--~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEP-SLEIKSEIPEPP--VEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeec-ccceeecccCCC--cCCCcceeEEEEecceeEEEEec
Confidence 67899999999999999999999998865 333333333322 22245688999988777777643
No 407
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.78 E-value=5 Score=40.17 Aligned_cols=188 Identities=8% Similarity=-0.004 Sum_probs=111.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCC--eEEEEeCCcCCCCCCCCcccceeeeeecCC-CCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 15 QIFSIDVQPGALRFATGGGDH--KVRIWNMKSVGKNFENDESTQRLLATLRDH-FGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg--~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
-...+.|..+|.++-+.|.-| .|+.+|+++ ++.+....-. .--=-.++.. +++...-.=.++...
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~t-----------g~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f 113 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLET-----------GKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF 113 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTT-----------SSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCC-----------CcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence 456777877888777777655 788899887 4433322211 1111122232 233333445678899
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC----
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS---- 167 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~---- 167 (689)
+||.++- +.+.++.- ...=+.|+ .|+..|+.......|+++|..+.+....+....
T Consensus 114 ~yd~~tl-----------------~~~~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~p 173 (264)
T PF05096_consen 114 VYDPNTL-----------------KKIGTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRP 173 (264)
T ss_dssp EEETTTT-----------------EEEEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE
T ss_pred EEccccc-----------------eEEEEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEE
Confidence 9998865 55555542 34456666 367778887778899999999988877765432
Q ss_pred -CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc---------ccCCcccEEEEEEcCCCCeEEEecC
Q 040062 168 -SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA---------KSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 168 -~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~---------~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
..+.-+.|. +|...|-.-....|...|..+++....+..... ........+.++|.|....+..++.
T Consensus 174 v~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 174 VSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp ---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred CCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 345567775 566666555566788888888887765532211 1112345789999998887777654
No 408
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.76 E-value=2.4 Score=48.05 Aligned_cols=149 Identities=16% Similarity=0.165 Sum_probs=83.0
Q ss_pred CCCCEEEEEeCC------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC-C-----eE
Q 040062 23 PGALRFATGGGD------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD-Q-----VI 90 (689)
Q Consensus 23 pdg~~Latgs~D------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-g-----~I 90 (689)
..+.+++.||.+ ..+..||.... ....+..+... ..-.+++.. ++...++|+.| | .+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~---------~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN---------EWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcC---------cEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCcccceE
Confidence 345677888776 35777887651 13334444322 223444444 45788888888 3 46
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEEec
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN-----TIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg-----~I~vwd~~~~~~~~~l~~ 165 (689)
..||...+ .|..+..+...........+ +|.+.|+|+.|| +|-.||..+.+.-..-.
T Consensus 352 e~YD~~~~---------------~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~- 413 (571)
T KOG4441|consen 352 ERYDPRTN---------------QWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP- 413 (571)
T ss_pred EEecCCCC---------------ceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCcccccCC-
Confidence 66766554 35555444433333333333 688889999887 57788887654322211
Q ss_pred CCCCeEEEEE-ccCCCEEEEEeCCC------eEEEEECCCCc
Q 040062 166 HSSLVKGVAW-DPIGSFIASQSDDK------TVIIWRTSDWS 200 (689)
Q Consensus 166 h~~~V~~l~~-spdg~~las~s~Dg------~I~iwd~~~~~ 200 (689)
+.....+... .-+|+..++|+.++ ++..||..+..
T Consensus 414 m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~ 455 (571)
T KOG4441|consen 414 MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNT 455 (571)
T ss_pred CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCc
Confidence 1112222221 22577778887554 56778876543
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.66 E-value=1.4 Score=49.62 Aligned_cols=120 Identities=10% Similarity=0.261 Sum_probs=77.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc--CC
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PD 136 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pd 136 (689)
..++...-....-+.-+.-++.-+.-+....+.|||...+. .+....+ .....|.++.|. ||
T Consensus 22 t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~---------------lE~~~~f-~~~~~I~dLDWtst~d 85 (631)
T PF12234_consen 22 TSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGV---------------LEYEESF-SEDDPIRDLDWTSTPD 85 (631)
T ss_pred EEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcE---------------EEEeeee-cCCCceeeceeeecCC
Confidence 34444334455555566555555554555689999998762 1222233 456789999995 68
Q ss_pred CCEEEEEeCCCeEEEEEcC---------CCeEEEE--EecCC-CCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 137 DSILASGSLDNTIHIWNMS---------TGICTAV--LRGHS-SLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~---------~~~~~~~--l~~h~-~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
++.+++.+..+.|.+|.-. +...+.. +..|+ .+|.+..|.++|.+++.++ ..+.|+|-
T Consensus 86 ~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 86 GQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred CCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 8899999999999999532 1122332 33455 6889999999987665543 47888874
No 410
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.58 E-value=0.12 Score=36.94 Aligned_cols=31 Identities=26% Similarity=0.513 Sum_probs=28.4
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
...|.++.|+|...+||.++.||.|.+|.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999983
No 411
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=94.40 E-value=0.12 Score=49.54 Aligned_cols=104 Identities=13% Similarity=0.157 Sum_probs=66.4
Q ss_pred CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE-EEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 78 GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD-LNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 78 g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
+..|+.|+.+|.|.+|....... ....+..-...|.+ +.-..++.+..+++.||.|+.|++.-
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~----------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p 133 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA----------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKP 133 (238)
T ss_pred CceEEeecccceEEEecCCccch----------------HHHhhhcccccceeccccccccceeEEeccCCceeeecccc
Confidence 45688999999999998763211 00111111222222 22233456888999999999999998
Q ss_pred CeEEEEEecCC-CCeEEEEEccCCCEEEEE--eCCCeEEEEECC
Q 040062 157 GICTAVLRGHS-SLVKGVAWDPIGSFIASQ--SDDKTVIIWRTS 197 (689)
Q Consensus 157 ~~~~~~l~~h~-~~V~~l~~spdg~~las~--s~Dg~I~iwd~~ 197 (689)
.+.+.....|+ ..+..+.....+++|+.+ |.|..++.|++.
T Consensus 134 ~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 134 NKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 88888777777 445455555555666666 666666666664
No 412
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.31 E-value=6.6 Score=39.55 Aligned_cols=149 Identities=12% Similarity=0.134 Sum_probs=88.3
Q ss_pred cEEEEEEcCCCCEEEEEe---CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe
Q 040062 68 SVNCVRWAKHGRYIASGS---DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs---~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs 144 (689)
.+...+++++++.+|... ....+.++..... ....+. ...+..-.|++++...+...
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~------------------~~~~~~--g~~l~~PS~d~~g~~W~v~~ 84 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGP------------------VRPVLT--GGSLTRPSWDPDGWVWTVDD 84 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCc------------------ceeecc--CCccccccccCCCCEEEEEc
Confidence 688999999999887765 2334555543322 111112 23678889999988777766
Q ss_pred CCCeEEEEE-cCCCeEE-EEEecC--CCCeEEEEEccCCCEEEEEe---CCCeEEEEECCC--CcceeeccCccccc-CC
Q 040062 145 LDNTIHIWN-MSTGICT-AVLRGH--SSLVKGVAWDPIGSFIASQS---DDKTVIIWRTSD--WSLAHRTDGHWAKS-LG 214 (689)
Q Consensus 145 ~Dg~I~vwd-~~~~~~~-~~l~~h--~~~V~~l~~spdg~~las~s---~Dg~I~iwd~~~--~~~~~~~~~~~~~~-~~ 214 (689)
.+...+++. ..++... ..+... ...|..+.++|||..++... .++.|.+--+.. ......+....... ..
T Consensus 85 ~~~~~~~~~~~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~ 164 (253)
T PF10647_consen 85 GSGGVRVVRDSASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL 164 (253)
T ss_pred CCCceEEEEecCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc
Confidence 666666663 3333221 112211 12899999999998877665 356777665431 11111221111111 12
Q ss_pred cccEEEEEEcCCCCeEEEecCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~ 236 (689)
...+..+.|.+++.+++.....
T Consensus 165 ~~~v~~v~W~~~~~L~V~~~~~ 186 (253)
T PF10647_consen 165 LSDVTDVAWSDDSTLVVLGRSA 186 (253)
T ss_pred cCcceeeeecCCCEEEEEeCCC
Confidence 3347899999999988876553
No 413
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.31 E-value=7.4 Score=40.13 Aligned_cols=273 Identities=14% Similarity=0.232 Sum_probs=117.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee-ecC-CCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT-LRD-HFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~-l~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
.++..|.|..+..-+++|.. +. |+...+..... +.... ... -.-..++|.|..+ ..+++ +..+ +.
T Consensus 17 ~~l~dV~F~d~~~G~~VG~~-g~--il~T~DGG~tW-------~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~l 83 (302)
T PF14870_consen 17 KPLLDVAFVDPNHGWAVGAY-GT--ILKTTDGGKTW-------QPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LL 83 (302)
T ss_dssp S-EEEEEESSSS-EEEEETT-TE--EEEESSTTSS--------EE-----S-----EEEEEEEETT-EEEEE-EETT-EE
T ss_pred CceEEEEEecCCEEEEEecC-CE--EEEECCCCccc-------cccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eE
Confidence 47999999966666666654 54 34444322221 11110 110 0123667888643 34444 4445 33
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-EEEEEecCCCCe
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-CTAVLRGHSSLV 170 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~-~~~~l~~h~~~V 170 (689)
+...+.+ ..|+.+..-..-......+....++. ...++..|.|+.=. ..++ -......-.+.+
T Consensus 84 l~T~DgG--------------~tW~~v~l~~~lpgs~~~i~~l~~~~-~~l~~~~G~iy~T~-DgG~tW~~~~~~~~gs~ 147 (302)
T PF14870_consen 84 LHTTDGG--------------KTWERVPLSSKLPGSPFGITALGDGS-AELAGDRGAIYRTT-DGGKTWQAVVSETSGSI 147 (302)
T ss_dssp EEESSTT--------------SS-EE----TT-SS-EEEEEEEETTE-EEEEETT--EEEES-STTSSEEEEE-S----E
T ss_pred EEecCCC--------------CCcEEeecCCCCCCCeeEEEEcCCCc-EEEEcCCCcEEEeC-CCCCCeeEcccCCccee
Confidence 4444444 45555542211222233333333333 33334445433221 2232 223334455778
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCC--CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee-
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSD--WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE- 247 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~- 247 (689)
..+.-+++|++++++.......-||--. +...... ....+..+.|+|++...+++.+ ..+..-+
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~--------~~~riq~~gf~~~~~lw~~~~G-----g~~~~s~~ 214 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN--------SSRRIQSMGFSPDGNLWMLARG-----GQIQFSDD 214 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----------SSS-EEEEEE-TTS-EEEEETT-----TEEEEEE-
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCccceEEccC--------ccceehhceecCCCCEEEEeCC-----cEEEEccC
Confidence 8888999999998887666666777532 2222221 2334899999999888776643 1222222
Q ss_pred ---cCCceeeeeec-CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 248 ---RGEWAATFDFL-GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 248 ---~~~~~~~~~l~-~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
..+|.....-. ...-.+..++|.++. .+.++|+. |.| +...
T Consensus 215 ~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~---------------------------------~~wa~gg~-G~l-~~S~ 259 (302)
T PF14870_consen 215 PDDGETWSEPIIPIKTNGYGILDLAYRPPN---------------------------------EIWAVGGS-GTL-LVST 259 (302)
T ss_dssp TTEEEEE---B-TTSS--S-EEEEEESSSS----------------------------------EEEEEST-T-E-EEES
T ss_pred CCCccccccccCCcccCceeeEEEEecCCC---------------------------------CEEEEeCC-ccE-EEeC
Confidence 12222211111 112236777887664 55565544 433 3445
Q ss_pred CCCCceEEecc--cCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 324 ASPRPLFVAKH--FFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 324 ~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
..++.=..... .-...++.+.|..+.+ -++.+.+|.|.-|
T Consensus 260 DgGktW~~~~~~~~~~~n~~~i~f~~~~~-gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 260 DGGKTWQKDRVGENVPSNLYRIVFVNPDK-GFVLGQDGVLLRY 301 (302)
T ss_dssp STTSS-EE-GGGTTSSS---EEEEEETTE-EEEE-STTEEEEE
T ss_pred CCCccceECccccCCCCceEEEEEcCCCc-eEEECCCcEEEEe
Confidence 55555444332 1244688889876644 4455568877655
No 414
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=94.28 E-value=3.9 Score=46.41 Aligned_cols=103 Identities=17% Similarity=0.229 Sum_probs=59.8
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----
Q 040062 77 HGRYIASGSDDQ------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD---- 146 (689)
Q Consensus 77 dg~~Lasgs~Dg------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D---- 146 (689)
.+.+++.|+.++ .+..||..++ .|.....+... ..-.+++.. ++.+.++|+.|
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~---------------~w~~~a~m~~~-r~~~~~~~~-~~~lYv~GG~~~~~~ 346 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTN---------------EWSSLAPMPSP-RCRVGVAVL-NGKLYVVGGYDSGSD 346 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcC---------------cEeecCCCCcc-cccccEEEE-CCEEEEEccccCCCc
Confidence 456777777763 5677777654 34444444422 223334443 56788889888
Q ss_pred --CeEEEEEcCCCeEEE--EEecCCCCeEEEEEccCCCEEEEEeCCCe-----EEEEECCC
Q 040062 147 --NTIHIWNMSTGICTA--VLRGHSSLVKGVAWDPIGSFIASQSDDKT-----VIIWRTSD 198 (689)
Q Consensus 147 --g~I~vwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~las~s~Dg~-----I~iwd~~~ 198 (689)
..+..||..+.+... .+....... +++. -+|...++|+.||. +..||..+
T Consensus 347 ~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~ 405 (571)
T KOG4441|consen 347 RLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKLYAVGGFDGEKSLNSVECYDPVT 405 (571)
T ss_pred ccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEEEEEeccccccccccEEEecCCC
Confidence 368889988776433 122111221 1221 25788888988864 66777654
No 415
>PRK13684 Ycf48-like protein; Provisional
Probab=94.14 E-value=2 Score=45.33 Aligned_cols=153 Identities=10% Similarity=0.074 Sum_probs=86.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEE-EeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRI-WNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~I-Wd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..++++.+.+++.+++++.. |.+.. ++-.. .....+ ...-...++++.+.++++.++.+ ..|.+++
T Consensus 173 g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~gg---------~tW~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~ 239 (334)
T PRK13684 173 GVVRNLRRSPDGKYVAVSSR-GNFYSTWEPGQ---------TAWTPH--QRNSSRRLQSMGFQPDGNLWMLA-RGGQIRF 239 (334)
T ss_pred ceEEEEEECCCCeEEEEeCC-ceEEEEcCCCC---------CeEEEe--eCCCcccceeeeEcCCCCEEEEe-cCCEEEE
Confidence 36899999999877776654 54443 22110 011222 22334678999999999877665 4576643
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTL-RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR---GHSS 168 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~---~h~~ 168 (689)
=..+.+ +.|+....- ......+.++.|.+++..++ ++.+|.|. .....++.-...+ .-..
T Consensus 240 ~s~d~G--------------~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~~ 303 (334)
T PRK13684 240 NDPDDL--------------ESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVPS 303 (334)
T ss_pred ccCCCC--------------CccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCCc
Confidence 223332 234432211 11224578899998777555 45567555 3444444433332 2223
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
....+.|..+++.+++ +..|.|.-|+-
T Consensus 304 ~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 304 NFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred ceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 5777888766666654 45678877653
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=94.08 E-value=8.3 Score=39.81 Aligned_cols=152 Identities=11% Similarity=0.110 Sum_probs=75.3
Q ss_pred ccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEE
Q 040062 113 ENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVI 192 (689)
Q Consensus 113 ~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~ 192 (689)
.+|+.+. ..-...+..+..++||++++++.......-||.-...-...-+.-...|..|.|.|++.+.+.+ ..|.|+
T Consensus 134 ~tW~~~~--~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 134 KTWQAVV--SETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp SSEEEEE---S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred CCeeEcc--cCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEE
Confidence 4565443 3445779999999999999888776667788865433344444457899999999998776654 788888
Q ss_pred EEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcC
Q 040062 193 IWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNH 271 (689)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp 271 (689)
+=+... .......+.... .....+..++|.+++...+++.... .....-.-.+|+.......-...++.+.|..
T Consensus 211 ~s~~~~--~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~---l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~ 285 (302)
T PF14870_consen 211 FSDDPD--DGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT---LLVSTDGGKTWQKDRVGENVPSNLYRIVFVN 285 (302)
T ss_dssp EEE-TT--EEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT----EEEESSTTSS-EE-GGGTTSSS---EEEEEE
T ss_pred EccCCC--CccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc---EEEeCCCCccceECccccCCCCceEEEEEcC
Confidence 877211 111111111111 1222378999999988777764411 0000112244555433334455677777764
Q ss_pred C
Q 040062 272 S 272 (689)
Q Consensus 272 ~ 272 (689)
.
T Consensus 286 ~ 286 (302)
T PF14870_consen 286 P 286 (302)
T ss_dssp T
T ss_pred C
Confidence 4
No 417
>PHA02713 hypothetical protein; Provisional
Probab=94.06 E-value=2.6 Score=47.87 Aligned_cols=67 Identities=9% Similarity=0.028 Sum_probs=37.6
Q ss_pred CCcEEEEEeCC------CcEEEEeCCC-CCceEEecccCCCCeEEEEEccCCCeEEEEeCCC--cEEEEEeeccccc
Q 040062 305 PYNVIAIGSQD------RTITVWTTAS-PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG--TVANFHFEVKELG 372 (689)
Q Consensus 305 ~~~~lasgs~D------g~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG--~I~vwd~~~~~l~ 372 (689)
++.+.+.|+.+ ..+..||..+ .+=..............++ .-+|+..++|+.|| .+..||..+.+..
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTI-LHDNTIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeE-EECCEEEEEeeecceeehhhcCccccccc
Confidence 45677777764 2367788876 3322111111111111222 22678888899888 6777887776654
No 418
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.96 E-value=16 Score=42.61 Aligned_cols=91 Identities=20% Similarity=0.303 Sum_probs=56.1
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCC-ccccCCCCC-CCcccceEEEEE--ecCCCCEEEEEEcCC---CC
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSG-TTEFGSGEP-PDIENWKVAMTL--RGHTADVVDLNWSPD---DS 138 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~-~~~~~~~~~-~~~~~~~~~~~l--~~h~~~V~~l~~spd---g~ 138 (689)
.-.|..|.++++|++||..+..| |.|..+...-+ ...|..+.. .....+..-..+ ..+...|..+.|+|. +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 34799999999999999988866 44444432110 111211111 111111111111 234567999999996 57
Q ss_pred EEEEEeCCCeEEEEEcCCC
Q 040062 139 ILASGSLDNTIHIWNMSTG 157 (689)
Q Consensus 139 ~Lasgs~Dg~I~vwd~~~~ 157 (689)
+|++-..|+++++||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 9999999999999999653
No 419
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=93.76 E-value=13 Score=40.78 Aligned_cols=57 Identities=16% Similarity=0.040 Sum_probs=36.8
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCC--ce---EEecccCCCCeEEEEEccCC-CeEEEEeCCCcEE
Q 040062 305 PYNVIAIGSQDRTITVWTTASPR--PL---FVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVA 362 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~--~~---~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~ 362 (689)
.+++|+.+-..+.|....++... .. ..+... ...|.++..+||| .+.+..+.+|.+.
T Consensus 368 ~g~llv~~L~~~~l~r~~l~~~~~~v~~~~~~~~~~-~~RiRdv~~~pDg~~iy~~td~~g~~~ 430 (454)
T TIGR03606 368 ENSLLIPSLKRGVIYRIKLDPDYSTVYGDAVPMFKT-NNRYRDVIASPDGNVLYVATDNFGNVQ 430 (454)
T ss_pred CCCEEEEEcCCCeEEEEEecCCcceecceeEEeecC-CCeeEEEEECCCCCEEEEEEcCCCccc
Confidence 46788888888888888886442 11 222222 4689999999997 4444455565543
No 420
>PRK10115 protease 2; Provisional
Probab=93.67 E-value=16 Score=42.70 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=59.9
Q ss_pred CCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC------CeEEEE
Q 040062 126 ADVVDLNWSPDDSILASGSLD-----NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD------KTVIIW 194 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~D-----g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D------g~I~iw 194 (689)
-.+..+.|+||+++|+.+... ..|++.|+.+++.+...-.... ..++|.+|++.|+....+ ..|+.+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 346778899999988765432 2689999988864322211111 469999999866655432 357778
Q ss_pred ECCCCc--ceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 195 RTSDWS--LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 195 d~~~~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
++.+.. -...+..... . .......+.++++++...
T Consensus 205 ~lgt~~~~d~lv~~e~~~----~-~~~~~~~s~d~~~l~i~~ 241 (686)
T PRK10115 205 TIGTPASQDELVYEEKDD----T-FYVSLHKTTSKHYVVIHL 241 (686)
T ss_pred ECCCChhHCeEEEeeCCC----C-EEEEEEEcCCCCEEEEEE
Confidence 887762 2222222111 1 112334455888776443
No 421
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.57 E-value=0.02 Score=60.35 Aligned_cols=142 Identities=17% Similarity=0.188 Sum_probs=97.0
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEEcC
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-GSDDQVILIHEKK 96 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~Dg~I~iwdl~ 96 (689)
...|-+.+.-++.++.+..|..||-.. +....+. ..+....++|..++..++. +-..+.+.+||+.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~ag------------q~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n 105 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAG------------QVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVN 105 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhc------------ceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhh
Confidence 344566665688888888899998653 3333332 4556678899988875544 4557899999998
Q ss_pred CCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
+.... ...+. .|.. .-+.|++....++.+...+.+.|++..+.+.+..+-.|...+.+++|
T Consensus 106 ~eytq----------------qLE~gg~~s~--sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av 167 (615)
T KOG2247|consen 106 SEYTQ----------------QLESGGTSSK--SLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAV 167 (615)
T ss_pred hhhHH----------------HHhccCcchH--HHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEe
Confidence 75211 00111 1222 22789998899999999999999999887776666669999999999
Q ss_pred ccCCCEEEEEeCCCeE
Q 040062 176 DPIGSFIASQSDDKTV 191 (689)
Q Consensus 176 spdg~~las~s~Dg~I 191 (689)
.+.+. .+.++.|..+
T Consensus 168 ~lEd~-vil~dcd~~L 182 (615)
T KOG2247|consen 168 TLEDY-VILCDCDNTL 182 (615)
T ss_pred cccce-eeecCcHHHH
Confidence 98764 4445555443
No 422
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.55 E-value=14 Score=42.91 Aligned_cols=76 Identities=21% Similarity=0.280 Sum_probs=53.8
Q ss_pred cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CeE--EE-EE--------ecCCCCeEEEEEccC---C
Q 040062 123 GHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---------GIC--TA-VL--------RGHSSLVKGVAWDPI---G 179 (689)
Q Consensus 123 ~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---------~~~--~~-~l--------~~h~~~V~~l~~spd---g 179 (689)
.-...|..|.++++|++|+..|..|.+.+.=.+. ++. .+ .+ ..+...|..+.|+|. +
T Consensus 82 ~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~ 161 (717)
T PF10168_consen 82 PPLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD 161 (717)
T ss_pred CCceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence 3445799999999999999998866444432221 111 11 11 134567899999996 4
Q ss_pred CEEEEEeCCCeEEEEECCC
Q 040062 180 SFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 180 ~~las~s~Dg~I~iwd~~~ 198 (689)
..|+.-..|+++|+||+..
T Consensus 162 ~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 162 SHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred CeEEEEecCCEEEEEecCC
Confidence 7899999999999999964
No 423
>PHA03098 kelch-like protein; Provisional
Probab=93.50 E-value=3.3 Score=46.81 Aligned_cols=105 Identities=10% Similarity=0.004 Sum_probs=52.4
Q ss_pred CCCEEEEEeCCC-----eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----
Q 040062 77 HGRYIASGSDDQ-----VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD----- 146 (689)
Q Consensus 77 dg~~Lasgs~Dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D----- 146 (689)
+++.++.|+.++ .+..||..++ .|.....+....... +++. -++.+++.|+.+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~---------------~W~~~~~lp~~r~~~-~~~~-~~~~iYv~GG~~~~~~~ 404 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGES---------------KWREEPPLIFPRYNP-CVVN-VNNLIYVIGGISKNDEL 404 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCC---------------ceeeCCCcCcCCccc-eEEE-ECCEEEEECCcCCCCcc
Confidence 577777787652 4666766554 344333222111111 1122 256677777632
Q ss_pred -CeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCC--------CeEEEEECCCCc
Q 040062 147 -NTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDD--------KTVIIWRTSDWS 200 (689)
Q Consensus 147 -g~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~D--------g~I~iwd~~~~~ 200 (689)
..+..||+.+.+....-. ..... .+++ ..+++.++.|+.+ ..+.+||..+.+
T Consensus 405 ~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 405 LKTVECFSLNTNKWSKGSPLPISHYG-GCAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNK 467 (534)
T ss_pred cceEEEEeCCCCeeeecCCCCccccC-ceEE-EECCEEEEECCccCCCCCcccceEEEecCCCCc
Confidence 468899987765432211 11111 1222 2346666666542 237888876543
No 424
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.43 E-value=13 Score=40.06 Aligned_cols=115 Identities=10% Similarity=0.141 Sum_probs=69.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEE---EEcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEc-----------C
Q 040062 71 CVRWAKHGRYIASGSDDQVILI---HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWS-----------P 135 (689)
Q Consensus 71 ~v~fspdg~~Lasgs~Dg~I~i---wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s-----------p 135 (689)
.+..+|++++||.+..+..+.+ |+...... ......+.....+.... ..|+++.|- +
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~--------~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~ 77 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGE--------NENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGP 77 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCC--------CCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCC
Confidence 4678999999999988877665 54422110 00011111122222111 356665553 3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC---------CEEEEEeCCCeEEEEE
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG---------SFIASQSDDKTVIIWR 195 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg---------~~las~s~Dg~I~iwd 195 (689)
|...+++|..+|.|++|.. +|.++..-.-|..+|..|.+.... .-|..... +.|.+.|
T Consensus 78 dw~~I~VG~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~~~~~~~~~~~~eel~ily~-~~v~~Id 144 (415)
T PF14655_consen 78 DWTCIAVGTSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRSTKIPRHPGDSSEELSILYP-SAVVIID 144 (415)
T ss_pred CcEEEEEEecccEEEEEec-cchHHHHHhcCccceEEEEecccCCCCCCcccccEEEEEEC-CEEEEEe
Confidence 5678999999999999996 676666656688999888875411 34444444 5666666
No 425
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.26 E-value=1.7 Score=49.53 Aligned_cols=169 Identities=11% Similarity=0.086 Sum_probs=95.7
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCC--------Ccc----cceeeeeecCCCCcEEEEEEcC--CCCEEEEEeCCCeE
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFEN--------DES----TQRLLATLRDHFGSVNCVRWAK--HGRYIASGSDDQVI 90 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~--------~~~----~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~Dg~I 90 (689)
.++|+++.. +.|.||+.......... ... .-....+.. ....|+.|.... +...|+.|.+||.|
T Consensus 49 ~n~LFiA~~-s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~V 126 (717)
T PF08728_consen 49 RNLLFIAYQ-SEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGDV 126 (717)
T ss_pred CCEEEEEEC-CEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCeE
Confidence 667777664 79999998764321100 000 000111111 223467766554 56689999999999
Q ss_pred EEEEcCCCCC-ccccCCC-CC-CCcccceEEEEEecCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEEcCCC--eEEE-E
Q 040062 91 LIHEKKPGSG-TTEFGSG-EP-PDIENWKVAMTLRGHTADVVDLNWS--PDDSILASGSLDNTIHIWNMSTG--ICTA-V 162 (689)
Q Consensus 91 ~iwdl~~~~~-~~~~~~~-~~-~~~~~~~~~~~l~~h~~~V~~l~~s--pdg~~Lasgs~Dg~I~vwd~~~~--~~~~-~ 162 (689)
.+|..+.--. ...+... +. ......+....+. -...++.|+++ ...++||+++....|.||-.... +... .
T Consensus 127 ~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 127 LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9998743210 0000000 00 0000011222232 34479999998 77778888888888888755431 1111 1
Q ss_pred EecCCCCeEEEEEccCC---C---EEEEEeCCCeEEEEEC
Q 040062 163 LRGHSSLVKGVAWDPIG---S---FIASQSDDKTVIIWRT 196 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg---~---~las~s~Dg~I~iwd~ 196 (689)
-..|...|-+|+|-++. . ++++++-.|.+.+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 11256778899997743 2 7888889999999887
No 426
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.17 E-value=6.3 Score=44.58 Aligned_cols=44 Identities=11% Similarity=0.101 Sum_probs=30.5
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC
Q 040062 306 YNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 349 (689)
..+|+.-..+|.|.+-+.+..+.+..+..........++|.-+.
T Consensus 228 ~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgnd 271 (829)
T KOG2280|consen 228 RRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGND 271 (829)
T ss_pred cceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecCC
Confidence 37888888999999988888777776654333334466665443
No 427
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.15 E-value=0.086 Score=59.58 Aligned_cols=146 Identities=14% Similarity=0.260 Sum_probs=87.2
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC---CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK---HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPD 111 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp---dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~ 111 (689)
|.+.||++.-...+.. ..-.++........+.-|.|.| +.-++..+-.++.|++...+...
T Consensus 153 g~lfVy~vd~l~G~iq----~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~------------ 216 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQ----PQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL------------ 216 (1283)
T ss_pred hhhheeehHhhccccc----cceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHH------------
Confidence 6789999875321110 0122222233334455566665 66788888888999887766531
Q ss_pred cccceEEEEEecCCCCEEEEE-----------EcCCCCEEEEEeCCCeEEEEEcC-----CCeEEEEEecCCC-CeEEEE
Q 040062 112 IENWKVAMTLRGHTADVVDLN-----------WSPDDSILASGSLDNTIHIWNMS-----TGICTAVLRGHSS-LVKGVA 174 (689)
Q Consensus 112 ~~~~~~~~~l~~h~~~V~~l~-----------~spdg~~Lasgs~Dg~I~vwd~~-----~~~~~~~l~~h~~-~V~~l~ 174 (689)
...+++|...+.+++ .||||..|+.+..||.+++|.+. .-.++...+.|+. +-.|.-
T Consensus 217 ------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~l 290 (1283)
T KOG1916|consen 217 ------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWL 290 (1283)
T ss_pred ------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeee
Confidence 123344665555544 58999999999999998888653 2345556666763 332322
Q ss_pred EccC-------C--CEEEEEe-CCCeEEEEECCCCcce
Q 040062 175 WDPI-------G--SFIASQS-DDKTVIIWRTSDWSLA 202 (689)
Q Consensus 175 ~spd-------g--~~las~s-~Dg~I~iwd~~~~~~~ 202 (689)
|+.+ + .++++++ .+..+++|....+++.
T Consensus 291 c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 291 CHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 3322 1 1344443 4567999998887776
No 428
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=92.88 E-value=12 Score=38.05 Aligned_cols=229 Identities=12% Similarity=0.092 Sum_probs=113.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcC------CC-eEEEEEec-----CCCCeEEEEEccCCCE------------E
Q 040062 127 DVVDLNWSPDDSILASGSLDNTIHIWNMS------TG-ICTAVLRG-----HSSLVKGVAWDPIGSF------------I 182 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasgs~Dg~I~vwd~~------~~-~~~~~l~~-----h~~~V~~l~~spdg~~------------l 182 (689)
.-+.|+|+|.+.+.++....+...+||.. .. .++..+.. .....+.+.|+....+ +
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 35789999999888888888999999986 12 22333332 2346788888754333 5
Q ss_pred EEEeCCCeEEEEECCCCcc---eeeccCcccccCCcccEEEEEEcC--CCCeEEEecCCCCCccccceeecCCceeeeee
Q 040062 183 ASQSDDKTVIIWRTSDWSL---AHRTDGHWAKSLGSTFFRRLGWSP--CGHFITTTHGFQKPRHSAPVLERGEWAATFDF 257 (689)
Q Consensus 183 as~s~Dg~I~iwd~~~~~~---~~~~~~~~~~~~~~~~i~~l~~sp--dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l 257 (689)
+.+++||+|.-|.-.-... ...+.. ...........+++-. .+.+|+.+.-. ...+.+++..-......
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~~~~--d~s~~gavYkGLAi~~~~~~~~LYaadF~---~g~IDVFd~~f~~~~~~- 177 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAEIVV--DASQQGNVYKGLAVGPTGGGDYLYAANFR---QGRIDVFKGSFRPPPLP- 177 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccEEEE--ccCCCcceeeeeEEeecCCCceEEEeccC---CCceEEecCccccccCC-
Confidence 6788999999998432211 001100 1111122234455543 35666665432 22222332211100000
Q ss_pred cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEec-ccC
Q 040062 258 LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK-HFF 336 (689)
Q Consensus 258 ~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~-~~h 336 (689)
-....+-.-.-|.|....... ...++.-.+..++...=+.|..-|.|.+||+. ++.++.+. ...
T Consensus 178 g~F~DP~iPagyAPFnIqnig--------------~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~ 242 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLG--------------GTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGR 242 (336)
T ss_pred CCccCCCCCCCCCCcceEEEC--------------CeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCc
Confidence 000001000111121100000 00000000000011112233344789999975 45555443 233
Q ss_pred CCCeEEEEEcc------CCCeEEEEeCCCcEEEEEeeccccccccC
Q 040062 337 TQSVVDLSWSP------DGYSLFACSLDGTVANFHFEVKELGHRLS 376 (689)
Q Consensus 337 ~~~V~~l~~sp------dg~~L~sgs~DG~I~vwd~~~~~l~~~l~ 376 (689)
-...+.|+..| .|.+|+----||+|.+||..+++....+.
T Consensus 243 LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 243 LNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred ccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 35567788766 46677766669999999999888766554
No 429
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=92.82 E-value=2.5 Score=46.34 Aligned_cols=127 Identities=12% Similarity=0.178 Sum_probs=77.7
Q ss_pred CceeeecCceEEEEEEcCCC-----CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CC----cEEEEEEc
Q 040062 6 PSWVRHEGMQIFSIDVQPGA-----LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FG----SVNCVRWA 75 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg-----~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~----~V~~v~fs 75 (689)
...++.. +.|+.+.|.|-+ .+||+ -....|.||.+.....+ ..+.+.....+ .. --..+.|+
T Consensus 50 s~viGqF-EhV~GlsW~P~~~~~~paLLAV-QHkkhVtVWqL~~s~~e------~~K~l~sQtcEi~e~~pvLpQGCVWH 121 (671)
T PF15390_consen 50 SKVIGQF-EHVHGLSWAPPCTADTPALLAV-QHKKHVTVWQLCPSTTE------RNKLLMSQTCEIREPFPVLPQGCVWH 121 (671)
T ss_pred ccEeecc-ceeeeeeecCcccCCCCceEEE-eccceEEEEEeccCccc------cccceeeeeeeccCCcccCCCccccc
Confidence 3445555 589999999953 35555 44589999998742111 12222211111 11 12456799
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-CeEEEEEc
Q 040062 76 KHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-NTIHIWNM 154 (689)
Q Consensus 76 pdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-g~I~vwd~ 154 (689)
|....|+.-.....-.++++..+.. +....+ ...+.|.|.+|.+||+.|+++-.. =.-+|||-
T Consensus 122 Pk~~iL~VLT~~dvSV~~sV~~d~s---------------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 122 PKKAILTVLTARDVSVLPSVHCDSS---------------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred CCCceEEEEecCceeEeeeeeeCCc---------------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 9998888776666556677665431 333444 456789999999999988776433 24567875
Q ss_pred CC
Q 040062 155 ST 156 (689)
Q Consensus 155 ~~ 156 (689)
..
T Consensus 186 ~q 187 (671)
T PF15390_consen 186 AQ 187 (671)
T ss_pred ch
Confidence 43
No 430
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.22 E-value=1.1 Score=47.22 Aligned_cols=119 Identities=18% Similarity=0.234 Sum_probs=81.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
++|.+|.||+|.+.||+--.|..|.+++... +........+.+..+..|....|+.+ .-+|.-+..| +-+|
T Consensus 67 G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~-------d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y 137 (657)
T KOG2377|consen 67 GEIKSIKFSLDNKILAVQRTSKTVDFCNFIP-------DNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFY 137 (657)
T ss_pred CceeEEEeccCcceEEEEecCceEEEEecCC-------CchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEE
Confidence 4999999999999999999999999999854 11122333333444566999999866 5566666555 6777
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE-EEe-CCCeEEEEEcCCC
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA-SGS-LDNTIHIWNMSTG 157 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs-~Dg~I~vwd~~~~ 157 (689)
.+.... +.++..+.|...|.-..|.++.+.++ +.+ ..+++.=+.++++
T Consensus 138 ~v~pek----------------rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 138 QVLPEK----------------RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred EEchhh----------------hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence 766542 45556677888899999998877433 323 4444444555444
No 431
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.19 E-value=24 Score=37.90 Aligned_cols=189 Identities=10% Similarity=0.004 Sum_probs=89.0
Q ss_pred EEEcCCCCEEEEEeC------CCeEEEEeCCcCCCCCCCCcccceeeeeecC---CCCcEEEEEEcCCCCEEEEEeC---
Q 040062 19 IDVQPGALRFATGGG------DHKVRIWNMKSVGKNFENDESTQRLLATLRD---HFGSVNCVRWAKHGRYIASGSD--- 86 (689)
Q Consensus 19 i~~spdg~~Latgs~------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~fspdg~~Lasgs~--- 86 (689)
+..-|+|.+++++-. -|-+.+.|-++ .+....... ....-..+.|.|.-+.++|...
T Consensus 135 ~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~t-----------f~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P 203 (461)
T PF05694_consen 135 VHCLPDGRIMISALGDADGNGPGGFVLLDGET-----------FEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAP 203 (461)
T ss_dssp EEE-SS--EEEEEEEETTS-S--EEEEE-TTT-------------EEEE--SB-TT------EEEETTTTEEEE-B---H
T ss_pred eeecCCccEEEEeccCCCCCCCCcEEEEcCcc-----------ccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCCh
Confidence 333478888887632 35677888765 333333322 1234467778888888888653
Q ss_pred -----------------CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC--CCEEEEEEcCC--CC-EEEEEe
Q 040062 87 -----------------DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT--ADVVDLNWSPD--DS-ILASGS 144 (689)
Q Consensus 87 -----------------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~--~~V~~l~~spd--g~-~Lasgs 144 (689)
...+.+||+.+. +.++++.--. .....+.|..+ .. -++.+.
T Consensus 204 ~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r-----------------~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~a 266 (461)
T PF05694_consen 204 SMFEKGFNPEDLEAGKYGHSLHVWDWSTR-----------------KLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCA 266 (461)
T ss_dssp HHHTT---TTTHHHH-S--EEEEEETTTT-----------------EEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE
T ss_pred hhcccCCChhHhhcccccCeEEEEECCCC-----------------cEeeEEecCCCCCceEEEEecCCCCccceEEEEe
Confidence 357999999987 5666655332 34667777654 33 344444
Q ss_pred CCCeEEEEEc-CCCe----EEEEEecC-----------------CCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcc
Q 040062 145 LDNTIHIWNM-STGI----CTAVLRGH-----------------SSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSL 201 (689)
Q Consensus 145 ~Dg~I~vwd~-~~~~----~~~~l~~h-----------------~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~ 201 (689)
..++|..|-- ..++ .+..+... ..-|+.|..|.|.++|.... .+|.|+.||+.+...
T Consensus 267 Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 267 LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 5666766644 3332 22222211 24578999999999988766 689999999976332
Q ss_pred eeec---c--Ccccc----c----CCcccEEEEEEcCCCCeEEEecC
Q 040062 202 AHRT---D--GHWAK----S----LGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 202 ~~~~---~--~~~~~----~----~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+.. . +...+ . .-.....-+..|-||+.|+.+++
T Consensus 347 Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 347 PKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp -EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred CcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence 2211 1 00000 0 00112366889999999998764
No 432
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=5.4 Score=43.13 Aligned_cols=26 Identities=15% Similarity=0.114 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.|..+..++.|..++-.+.+|.+.++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEE
Confidence 47788889999999988888865543
No 433
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=90.80 E-value=6.7 Score=44.47 Aligned_cols=120 Identities=14% Similarity=0.255 Sum_probs=78.9
Q ss_pred ccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-cCCCCeEEEEEc--cCCCEEEEEeCCC
Q 040062 113 ENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR-GHSSLVKGVAWD--PIGSFIASQSDDK 189 (689)
Q Consensus 113 ~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~-~h~~~V~~l~~s--pdg~~las~s~Dg 189 (689)
-.|.....+...-..+.-+.-|.-++..++-+....+.|||.+.+.....-. ...+.|..+.|. |+++.+++.+..+
T Consensus 17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence 3456666666555666666666655555554455689999998887544333 357889999986 5788888888888
Q ss_pred eEEEEECC---------CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 190 TVIIWRTS---------DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 190 ~I~iwd~~---------~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.|.+|.-. ++..+.++.... .....|....|.++|..+++++.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~---~T~h~Igds~Wl~~G~LvV~sGN 148 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISS---HTPHPIGDSIWLKDGTLVVGSGN 148 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeec---CCCCCccceeEecCCeEEEEeCC
Confidence 99998531 233333332211 11233778899999999887643
No 434
>PHA03098 kelch-like protein; Provisional
Probab=90.54 E-value=8.5 Score=43.51 Aligned_cols=63 Identities=11% Similarity=0.055 Sum_probs=34.1
Q ss_pred CCCEEEEEeCCC------eEEEEEcCCCeEEEEE--ecCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCc
Q 040062 136 DDSILASGSLDN------TIHIWNMSTGICTAVL--RGHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWS 200 (689)
Q Consensus 136 dg~~Lasgs~Dg------~I~vwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~ 200 (689)
++..++.|+.++ .+..||..+.+....- .........+. -+++.++.|+.+ ..+..||..+.+
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 456667776542 5788898776553221 10111112222 256777777755 246778876543
No 435
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.53 E-value=4.1 Score=43.24 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=93.8
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
|.++++.+-..|.+.=|-.+..+. .-.+.--....|+|.++.||+|.+.||.--.|..|.+++........
T Consensus 32 DaNkqlfavrSggatgvvvkgpnd--------DVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l- 102 (657)
T KOG2377|consen 32 DANKQLFAVRSGGATGVVVKGPND--------DVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL- 102 (657)
T ss_pred cCcceEEEEecCCeeEEEEeCCCC--------CCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-
Confidence 444444444556677787765221 11122222356799999999999999999999999999886543211
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
......+..+..|...+|+.+ .-+|.....| +-+|-... ...++..+.|+-.|.-..|.++.+.+
T Consensus 103 ------------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~ 168 (657)
T KOG2377|consen 103 ------------EYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVI 168 (657)
T ss_pred ------------HHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceE
Confidence 111222233456889999854 5566655443 66665543 33455566788888888999987754
Q ss_pred EEEe--CCCeEEEEECCCC
Q 040062 183 ASQS--DDKTVIIWRTSDW 199 (689)
Q Consensus 183 as~s--~Dg~I~iwd~~~~ 199 (689)
+-++ ..+++.=+-++++
T Consensus 169 LL~t~~~~n~lnpf~~~~~ 187 (657)
T KOG2377|consen 169 LLSTTVLENVLNPFHFRAG 187 (657)
T ss_pred eeeccccccccccEEEeec
Confidence 4333 3444444444443
No 436
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.94 E-value=23 Score=37.08 Aligned_cols=162 Identities=17% Similarity=0.137 Sum_probs=87.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCe------EEEEeCCcCCCCCCCCcccceeeeeecCCCC--------cEEEEEEcCCCCE
Q 040062 15 QIFSIDVQPGALRFATGGGDHK------VRIWNMKSVGKNFENDESTQRLLATLRDHFG--------SVNCVRWAKHGRY 80 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~------V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~--------~V~~v~fspdg~~ 80 (689)
.+..|.+.+++..+++-+.+|. +..+++...... ...........+..-.+ -.-+|++.++|.+
T Consensus 21 GlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 21 GLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGG--IGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCC--ccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5889999976666666677777 666665541110 00000111112222222 2337888788888
Q ss_pred EEEEeCC------CeEEEEEcCCCCCccccCCCCCCCcccceEEE---EEecCCCCEEEEEEcCCCCEEEEEeC-----C
Q 040062 81 IASGSDD------QVILIHEKKPGSGTTEFGSGEPPDIENWKVAM---TLRGHTADVVDLNWSPDDSILASGSL-----D 146 (689)
Q Consensus 81 Lasgs~D------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~---~l~~h~~~V~~l~~spdg~~Lasgs~-----D 146 (689)
+++.-.+ ..|..++.+ +.....+.... . +.... .-.......-.|+++|||+.|+++.. |
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~--~---~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d 172 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPA--A---FLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQD 172 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEcccc--c---cccccCccccccCCCCeEEEEECCCCCEEEEEECccccCC
Confidence 8877666 677777766 43222221100 0 00000 11234567999999999997666542 2
Q ss_pred C-----------eEEEEEcCC-CeE----EEEEec-----CCCCeEEEEEccCCCEEEE
Q 040062 147 N-----------TIHIWNMST-GIC----TAVLRG-----HSSLVKGVAWDPIGSFIAS 184 (689)
Q Consensus 147 g-----------~I~vwd~~~-~~~----~~~l~~-----h~~~V~~l~~spdg~~las 184 (689)
+ .|..||..+ ++. ...+.. ....|..+.+.+++++|+.
T Consensus 173 ~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 173 GPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred CcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 2 234455544 222 222221 3467888888888886654
No 437
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.51 E-value=25 Score=36.90 Aligned_cols=159 Identities=15% Similarity=0.149 Sum_probs=90.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCe------EEEEEcCCCCC-ccccCCCCCCCcccceEEEEEec--------CCCCEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQV------ILIHEKKPGSG-TTEFGSGEPPDIENWKVAMTLRG--------HTADVV 129 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~------I~iwdl~~~~~-~~~~~~~~~~~~~~~~~~~~l~~--------h~~~V~ 129 (689)
.-+.+..+.+.+++..+++.+++|. +..+++..... .... .. .....+.. -..+.-
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~L~~~~G~~~~~~~~D~E 88 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGV--------TI-LDMIPLRDPDGQPFPKNGLDPE 88 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccce--------Ee-ccceeccCCCCCcCCcCCCChh
Confidence 4567889999976666777788887 66666554110 0000 00 01111111 112566
Q ss_pred EEEEcCCCCEEEEEeCC------CeEEEEEcCCCeEEEEEe---------------cCCCCeEEEEEccCCCEEEEEeC-
Q 040062 130 DLNWSPDDSILASGSLD------NTIHIWNMSTGICTAVLR---------------GHSSLVKGVAWDPIGSFIASQSD- 187 (689)
Q Consensus 130 ~l~~spdg~~Lasgs~D------g~I~vwd~~~~~~~~~l~---------------~h~~~V~~l~~spdg~~las~s~- 187 (689)
.|++.+++.++++-=.+ ..|+.++.. |.....+. ..+...-+|+++|+|+.|+++.+
T Consensus 89 gi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~ 167 (326)
T PF13449_consen 89 GIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMES 167 (326)
T ss_pred HeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECc
Confidence 88887788888877667 789889876 55544431 13456789999999996666543
Q ss_pred ----CC--e-------EEEEEC--CC-CcceeeccCccccc---CCcccEEEEEEcCCCCeEEEe
Q 040062 188 ----DK--T-------VIIWRT--SD-WSLAHRTDGHWAKS---LGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 188 ----Dg--~-------I~iwd~--~~-~~~~~~~~~~~~~~---~~~~~i~~l~~spdg~~l~~~ 233 (689)
|+ . ++|+.. .+ +.....+....... .....+..+.+.+++++++.-
T Consensus 168 ~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLE 232 (326)
T PF13449_consen 168 PLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLE 232 (326)
T ss_pred cccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEE
Confidence 22 1 455544 33 22222222221110 023347788888888877653
No 438
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=89.19 E-value=0.089 Score=55.74 Aligned_cols=144 Identities=14% Similarity=0.251 Sum_probs=96.4
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASG 143 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asg 143 (689)
|-..-...+|-+.+.-|+.++.+..+..||-... ..... ..+....+++|..++..+ +.+
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD~agq------------------~~le~-n~tg~aldm~wDkegdvlavlA 93 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYDKAGQ------------------VILEL-NPTGKALDMAWDKEGDVLAVLA 93 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhhhhcc------------------eeccc-CCchhHhhhhhccccchhhhhh
Confidence 3334445678888777888888889999986543 12222 234567788888887744 445
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGW 223 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 223 (689)
-..+.+.+||+.+......-.+....-.-+.|++....++.+...+.+.||+..+...+.....+... +.+++|
T Consensus 94 ek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RR------gtq~av 167 (615)
T KOG2247|consen 94 EKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRR------GTQIAV 167 (615)
T ss_pred hcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccc------eeEEEe
Confidence 67789999999754222111111111122788988888888888999999998776665555445443 778889
Q ss_pred cCCCCeEEEe
Q 040062 224 SPCGHFITTT 233 (689)
Q Consensus 224 spdg~~l~~~ 233 (689)
.+.+..+...
T Consensus 168 ~lEd~vil~d 177 (615)
T KOG2247|consen 168 TLEDYVILCD 177 (615)
T ss_pred cccceeeecC
Confidence 8888777654
No 439
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=89.15 E-value=1.5 Score=30.42 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=26.0
Q ss_pred CCeEEEEEccCC---CEEEEEeCCCeEEEEECCC
Q 040062 168 SLVKGVAWDPIG---SFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 168 ~~V~~l~~spdg---~~las~s~Dg~I~iwd~~~ 198 (689)
+.|.++.|+|.+ .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 468899999854 4888888889999999984
No 440
>PRK13684 Ycf48-like protein; Provisional
Probab=89.02 E-value=33 Score=36.11 Aligned_cols=149 Identities=12% Similarity=0.232 Sum_probs=75.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEE-EECC--CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVII-WRTS--DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~i-wd~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
...+.++.+.+++.+++++. .|.+.. +|-. ++..... .....+..+.+.++++.++++... .+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~--------~~~~~l~~i~~~~~g~~~~vg~~G-----~~ 237 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQR--------NSSRRLQSMGFQPDGNLWMLARGG-----QI 237 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeC--------CCcccceeeeEcCCCCEEEEecCC-----EE
Confidence 45788999999887766554 454432 2211 1222111 122347888999999877765331 11
Q ss_pred cee--e-cCCceeeeee-cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 244 PVL--E-RGEWAATFDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 244 ~i~--~-~~~~~~~~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
.+. + -.+|.....- ......+..+.|.+++ . ++.++.+|.+.
T Consensus 238 ~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~---------------------------------~-~~~~G~~G~v~ 283 (334)
T PRK13684 238 RFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG---------------------------------E-IWAGGGNGTLL 283 (334)
T ss_pred EEccCCCCCccccccCCccccccceeeEEEcCCC---------------------------------C-EEEEcCCCeEE
Confidence 110 1 1233321110 0011235566666553 3 44455666554
Q ss_pred EEeCCCCCceEEecc--cCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 320 VWTTASPRPLFVAKH--FFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 320 iwd~~~~~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
.....++.-..... .-....+.+.|..+++.++ .+..|.|.-|+
T Consensus 284 -~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~ 329 (334)
T PRK13684 284 -VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV 329 (334)
T ss_pred -EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence 34444444333221 1123577888877666554 55588887765
No 441
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=88.78 E-value=2 Score=47.60 Aligned_cols=87 Identities=11% Similarity=0.132 Sum_probs=56.9
Q ss_pred EEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCC-eEEEEECCCCcceeeccCc------ccccCCcccEEEE
Q 040062 149 IHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK-TVIIWRTSDWSLAHRTDGH------WAKSLGSTFFRRL 221 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg-~I~iwd~~~~~~~~~~~~~------~~~~~~~~~i~~l 221 (689)
+.+=|+.+...+..++.|..++..++|.+.+..+++++-.| .|.++++. ..+.+.... .........+..+
T Consensus 297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRim--et~~t~~~~~qs~~~s~ra~t~aviqdi 374 (788)
T KOG2109|consen 297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIM--ETVCTVNVSDQSLVVSPRANTAAVIQDI 374 (788)
T ss_pred EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEec--cccccccccccccccchhcchHHHHHHH
Confidence 56667777778888999999999999999999999888654 45555542 222221111 0111223345667
Q ss_pred EEcCCCCeEEEecCCC
Q 040062 222 GWSPCGHFITTTHGFQ 237 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~ 237 (689)
+|+...+.+...+..+
T Consensus 375 cfs~~s~~r~~gsc~G 390 (788)
T KOG2109|consen 375 CFSEVSTIRTAGSCEG 390 (788)
T ss_pred hhhhhcceEeecccCC
Confidence 8888888887765443
No 442
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.71 E-value=1.5 Score=30.46 Aligned_cols=32 Identities=19% Similarity=0.488 Sum_probs=26.9
Q ss_pred CcEEEEEEcCC-C--CEEEEEeCCCeEEEEEcCCC
Q 040062 67 GSVNCVRWAKH-G--RYIASGSDDQVILIHEKKPG 98 (689)
Q Consensus 67 ~~V~~v~fspd-g--~~Lasgs~Dg~I~iwdl~~~ 98 (689)
|.|.++.|+|+ + .+|+.+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 46899999984 4 58998888899999999853
No 443
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=87.83 E-value=27 Score=33.76 Aligned_cols=156 Identities=17% Similarity=0.193 Sum_probs=84.5
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---C---eEEEE---EcC
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---Q---VILIH---EKK 96 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g---~I~iw---dl~ 96 (689)
..|..+...+.|.+|++.. +..+.+.+|..- +.|..+.++..|+||++--.+ . .+|+| +..
T Consensus 29 d~Lfva~~g~~Vev~~l~~---------~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~ 98 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQ---------EECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ 98 (215)
T ss_pred ceEEEEcCCCEEEEEEccc---------CCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh
Confidence 4444445557899999984 125667777644 889999999999999986432 2 45654 332
Q ss_pred C-C-CCcc--ccC-CCCCCCcccce---EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-E-----EE
Q 040062 97 P-G-SGTT--EFG-SGEPPDIENWK---VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC-T-----AV 162 (689)
Q Consensus 97 ~-~-~~~~--~~~-~~~~~~~~~~~---~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~-~-----~~ 162 (689)
. . .... ..+ .......+... .+-.+. -...+.+++..|-..-|+.|+ ++.+.+|.+..... . ..
T Consensus 99 ~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~~~lD 176 (215)
T PF14761_consen 99 KEENSPVRVRIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKFSFLD 176 (215)
T ss_pred cccCCcEEEEEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccccEEe
Confidence 1 1 1110 001 00111111111 112222 245677888877544455554 57899998754322 1 11
Q ss_pred Ee-----cCCC-CeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 163 LR-----GHSS-LVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 163 l~-----~h~~-~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
+. -|.+ .+..+++. +.|+|..++. .++++.+
T Consensus 177 Fe~~l~~~~~~~~p~~v~ic--~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 177 FERSLIDHIDNFKPTQVAIC--EGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred chhhhhheecCceEEEEEEE--eeEEEEecCC-EEEEEEE
Confidence 11 1112 24455555 6688877754 6777765
No 444
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.49 E-value=36 Score=34.77 Aligned_cols=78 Identities=12% Similarity=0.144 Sum_probs=53.8
Q ss_pred CeEEEEEcCCCeEEEEEe--cCCCCeEEEEEcc------CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 147 NTIHIWNMSTGICTAVLR--GHSSLVKGVAWDP------IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~--~h~~~V~~l~~sp------dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
|.|-+||+ .+..++++. +.-..-+.|+..| .+.+|+---.||+|..||..+++.+-.+...........-+
T Consensus 222 G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GL 300 (336)
T TIGR03118 222 GYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGL 300 (336)
T ss_pred ceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCe
Confidence 46777776 456666553 2234556777765 45667766679999999999988887777766655555557
Q ss_pred EEEEEcC
Q 040062 219 RRLGWSP 225 (689)
Q Consensus 219 ~~l~~sp 225 (689)
+.+.|-.
T Consensus 301 WgL~fGn 307 (336)
T TIGR03118 301 WSLTFGN 307 (336)
T ss_pred EEeeeCC
Confidence 7787765
No 445
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=87.23 E-value=4 Score=46.70 Aligned_cols=126 Identities=15% Similarity=0.130 Sum_probs=81.3
Q ss_pred eEEEEEEcC--CCCEEEEEeCCCeEEEEeCCcCCCCCCCC---c------ccceeeeeecCCCCcEEEEEEc--CCCCEE
Q 040062 15 QIFSIDVQP--GALRFATGGGDHKVRIWNMKSVGKNFEND---E------STQRLLATLRDHFGSVNCVRWA--KHGRYI 81 (689)
Q Consensus 15 ~I~si~~sp--dg~~Latgs~Dg~V~IWd~~~~~~~~~~~---~------~~~~~~~~l~~h~~~V~~v~fs--pdg~~L 81 (689)
.|+.|.+.. +...|+.|..||.|.+|.++.+-...+.. . ...++...+. -...++.++++ ...++|
T Consensus 102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlI 180 (717)
T PF08728_consen 102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLI 180 (717)
T ss_pred eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEE
Confidence 377777665 44789999999999999876532111111 0 0111222233 33478999998 788899
Q ss_pred EEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC---C---EEEEEeCCCeEEEEEcC
Q 040062 82 ASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD---S---ILASGSLDNTIHIWNMS 155 (689)
Q Consensus 82 asgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg---~---~Lasgs~Dg~I~vwd~~ 155 (689)
|.++....|.||-......... ... -..|...|-+++|-++. . .|++++-.|.+.+|++.
T Consensus 181 AVSsNs~~VTVFaf~l~~~r~~-------------~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 181 AVSSNSQEVTVFAFALVDERFY-------------HVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEecCCceEEEEEEeccccccc-------------ccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 9999888888887655311100 000 11266778999997643 2 78889999999999883
No 446
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.20 E-value=8 Score=41.11 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
+-+++-...|.+.++.....+.+..... .+.+..+++||.+.+|++-. .|.|+++.+++..
T Consensus 329 kgF~~l~~~G~L~~f~st~~~~lL~~~~--~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 329 KGFYSLYRNGTLQSFYSTSEKLLLFERA--YQAPQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred ceEEEEcCCCceeeeecccCcceehhhh--hcCcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 5677778889988887655554433222 34678899999999988654 6789999998754
No 447
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.43 E-value=52 Score=35.52 Aligned_cols=148 Identities=9% Similarity=0.039 Sum_probs=82.7
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCccccee-eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRL-LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~-~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.+.+..++||.+++.+..-..++-||--. .. ...-......++.+.|.+++..++.+ .+|.+. |.
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~------------~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~-~S 306 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ------------PYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGLY-VS 306 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC------------cceEEecCCCccceeeeeEcCCCCEEEEe-CCceEE-Ee
Confidence 45566778888888776533333454321 11 11112234568999999999877765 556543 44
Q ss_pred cCCCCCccccCCCCCCCcccce--EEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---cCC
Q 040062 95 KKPGSGTTEFGSGEPPDIENWK--VAMTLRG--HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR---GHS 167 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~--~~~~l~~--h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~---~h~ 167 (689)
.+.+. .|. ....+.. ....+.++.|..++..+++ +..|.+.... ..++.-.... .-.
T Consensus 307 ~d~G~--------------~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~ 370 (398)
T PLN00033 307 KGTGL--------------TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIA 370 (398)
T ss_pred cCCCC--------------cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCC
Confidence 43331 111 1111111 2245899999977765554 5567666654 3444333322 224
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEE
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIW 194 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iw 194 (689)
...+.+.|.++++.+++| .+|.|.-|
T Consensus 371 ~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 371 ANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred cceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 567899988776666555 56776554
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=86.04 E-value=27 Score=38.88 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=33.6
Q ss_pred CCCEEEEEeCC--CeEEEEEcCCCeEEE--EEecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEECCCC
Q 040062 136 DDSILASGSLD--NTIHIWNMSTGICTA--VLRGHSSLVKGVAWDPIGSFIASQSDDK---TVIIWRTSDW 199 (689)
Q Consensus 136 dg~~Lasgs~D--g~I~vwd~~~~~~~~--~l~~h~~~V~~l~~spdg~~las~s~Dg---~I~iwd~~~~ 199 (689)
++.+.+.|+.+ ..+..||..+.+... .+....... +++ .-+|+..+.|+.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~-~~~g~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVA-SINNVIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEE-EECCEEEEecCcCCCCccEEEEeCCCC
Confidence 67777777754 368888876654322 121111111 122 23577777777543 4677887653
No 449
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=85.99 E-value=8.4 Score=46.40 Aligned_cols=145 Identities=14% Similarity=0.202 Sum_probs=88.9
Q ss_pred eCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEc--------CCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 32 GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA--------KHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 32 s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs--------pdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
+-|+.+.+|++++ ......+.+-...|..|..- |.=++|+.-+.--.|.|+-+.-......
T Consensus 96 TiDn~L~lWny~~-----------~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~ 164 (1311)
T KOG1900|consen 96 TIDNNLFLWNYES-----------DNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGE 164 (1311)
T ss_pred EeCCeEEEEEcCC-----------CCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCc
Confidence 3578999999987 44455566666666666542 3334555555556677776543321110
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc----CCC---e-E----------------
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNM----STG---I-C---------------- 159 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~----~~~---~-~---------------- 159 (689)
. ..+.....+......|.|+....+|+.+++|- || .+|.+ ..+ + +
T Consensus 165 ~--------~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 165 L--------SIFNTSFKISVDGVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred c--------cccccceeeecCCceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 0 00011133333456789999888888777665 55 44443 211 1 1
Q ss_pred EEEEe-cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 160 TAVLR-GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 160 ~~~l~-~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
+..+. .+..+|..|+.+..-+.+.+-++.++|.+||+..
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 01122 4677999999998888999999999999999865
No 450
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=85.98 E-value=4.3 Score=46.07 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=54.2
Q ss_pred CcccceEEEEEecCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEEcCC----CeEEEEE--ec----------------
Q 040062 111 DIENWKVAMTLRGHTADVVDLNWS---PDDSILASGSLDNTIHIWNMST----GICTAVL--RG---------------- 165 (689)
Q Consensus 111 ~~~~~~~~~~l~~h~~~V~~l~~s---pdg~~Lasgs~Dg~I~vwd~~~----~~~~~~l--~~---------------- 165 (689)
+.+.|...............+... .+...|+.+..||.+....... +...... ..
T Consensus 129 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~ 208 (547)
T PF11715_consen 129 NFEDWCRSYVPYSFSFRSPHRLAAVTHDSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYR 208 (547)
T ss_dssp S--S-EE-B-SS-TTTS-EEEEEEE---SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT--
T ss_pred cccCccEeeeCCCCCccCCCeEEEEEecCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccc
Confidence 344565555544444332222222 3677889999999998887764 2222211 10
Q ss_pred ----CCCCeEEEEEcc----CCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 166 ----HSSLVKGVAWDP----IGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 166 ----h~~~V~~l~~sp----dg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
..+.+..++++. +..+|++.+.|+++|+||+.+++++.....
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 209 GDNSSSSVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp -SSSS---EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEET
T ss_pred cCCCCCCccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEecc
Confidence 123455666666 678999999999999999999999776544
No 451
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.87 E-value=41 Score=38.41 Aligned_cols=40 Identities=13% Similarity=0.095 Sum_probs=32.0
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
+.+..+..+|+.++|+-=..+|.|.+-+.+..+....+..
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~ 256 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNC 256 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccCC
Confidence 5567788899999999988999999988877666666553
No 452
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=85.13 E-value=0.77 Score=52.33 Aligned_cols=69 Identities=14% Similarity=0.138 Sum_probs=47.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEE-----------EcCCCCEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVR-----------WAKHGRYIASG 84 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~-----------fspdg~~Lasg 84 (689)
|.-+-|-++.-++..+-.++.|++.+... .....+.+|...+..++ .||||+.||.+
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~r------------a~~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a 253 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINR------------ALRSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWA 253 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeech------------HHHHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEe
Confidence 33334444566777777788888877664 22244555776666555 58899999999
Q ss_pred eCCCeEEEEEcC
Q 040062 85 SDDQVILIHEKK 96 (689)
Q Consensus 85 s~Dg~I~iwdl~ 96 (689)
+.||.++.|.+.
T Consensus 254 ~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 254 ISDGSVGFYQIY 265 (1283)
T ss_pred ecCCccceeeee
Confidence 999998888764
No 453
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=85.05 E-value=47 Score=33.72 Aligned_cols=158 Identities=16% Similarity=0.081 Sum_probs=98.8
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
+..+.|+ +++...+..+.-++|.|+.+.. .+.++..+.. .+.-.++.. .|++...+..|.-+.+.|+
T Consensus 89 ~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~--------sP~~~~~lnt-~gyaygv~v--sGn~aYVadlddgfLivdv 155 (370)
T COG5276 89 FADVRVS--EEYVYVADWSSGLRIVDISTPD--------SPTLIGFLNT-DGYAYGVYV--SGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hheeEec--ccEEEEEcCCCceEEEeccCCC--------CcceeccccC-CceEEEEEe--cCCEEEEeeccCcEEEEEC
Confidence 4445555 4466666677779999998732 2444444432 244455555 4888888886666788898
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE---EEEEecCCCCeEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC---TAVLRGHSSLVKG 172 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~---~~~l~~h~~~V~~ 172 (689)
.+.+.. ....+.......-..++.| |++-..+..|+-+.+.|+..... +.... ....+.+
T Consensus 156 sdpssP--------------~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvli~~~n-~g~g~~s 218 (370)
T COG5276 156 SDPSSP--------------QLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVLIGSYN-TGPGTYS 218 (370)
T ss_pred CCCCCc--------------eeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeEEEEEe-cCCceEE
Confidence 775321 3444555555556778886 77788888999999999976432 22222 2336777
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
+..+++-.+++... --+.+-|..+.+....+
T Consensus 219 v~vsdnr~y~vvy~--egvlivd~s~~ssp~~~ 249 (370)
T COG5276 219 VSVSDNRAYLVVYD--EGVLIVDVSGPSSPTVF 249 (370)
T ss_pred EEecCCeeEEEEcc--cceEEEecCCCCCceEe
Confidence 77776555554443 34777777665544433
No 454
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=85.01 E-value=32 Score=38.20 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=60.9
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEE--EEecCC-CCEEEEEEcCCCCEEEEEeC---
Q 040062 72 VRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM--TLRGHT-ADVVDLNWSPDDSILASGSL--- 145 (689)
Q Consensus 72 v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~--~l~~h~-~~V~~l~~spdg~~Lasgs~--- 145 (689)
+.+.++|.+++... ..+..+|+... .+. .+.... ..=.++.+.|+|++|+.+..
T Consensus 153 ~~~l~nG~ll~~~~--~~~~e~D~~G~------------------v~~~~~l~~~~~~~HHD~~~l~nGn~L~l~~~~~~ 212 (477)
T PF05935_consen 153 FKQLPNGNLLIGSG--NRLYEIDLLGK------------------VIWEYDLPGGYYDFHHDIDELPNGNLLILASETKY 212 (477)
T ss_dssp EEE-TTS-EEEEEB--TEEEEE-TT--------------------EEEEEE--TTEE-B-S-EEE-TTS-EEEEEEETTE
T ss_pred eeEcCCCCEEEecC--CceEEEcCCCC------------------EEEeeecCCcccccccccEECCCCCEEEEEeeccc
Confidence 66778998887665 67888877542 222 222210 01135667788888887762
Q ss_pred ----------CCeEEEEEcCCCeEEEEEec--CC-------------------------CCeEEEEEccCCCEEEEEeC-
Q 040062 146 ----------DNTIHIWNMSTGICTAVLRG--HS-------------------------SLVKGVAWDPIGSFIASQSD- 187 (689)
Q Consensus 146 ----------Dg~I~vwd~~~~~~~~~l~~--h~-------------------------~~V~~l~~spdg~~las~s~- 187 (689)
.-.|..+| .+|+.+..+.. |- -.+.++.+++....|+..+.
T Consensus 213 ~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~ 291 (477)
T PF05935_consen 213 VDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH 291 (477)
T ss_dssp E-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT
T ss_pred ccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc
Confidence 22466666 67777665421 10 35789999994444444444
Q ss_pred CCeEEEEECCCCcceeeccCc
Q 040062 188 DKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 188 Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
-..|...|.++++....+..+
T Consensus 292 ~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 292 QSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp T-EEEEEE-TTS-EEEEES-S
T ss_pred ceEEEEEECCCCcEEEEeCCC
Confidence 458999998888888777654
No 455
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=84.73 E-value=27 Score=33.78 Aligned_cols=103 Identities=10% Similarity=0.108 Sum_probs=62.0
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC------CeEEEE
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD------NTIHIW 152 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D------g~I~vw 152 (689)
+.|+.+...+.|.+|++..... +....+.. -+.|..|.++..|+||++-=.+ ..+++|
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~---------------~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEEC---------------PLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCC---------------ceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 4454446667899999984321 34455543 3779999999999999985322 256665
Q ss_pred -EcCC----CeEEE-EEec---------------------CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 153 -NMST----GICTA-VLRG---------------------HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 153 -d~~~----~~~~~-~l~~---------------------h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
|++. ...+. .+-+ -...+.+++..|...-|+.|+.+ ++.+|.+..
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~ 164 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKY 164 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEE
Confidence 2221 11111 1111 23456677777754455566644 899998753
No 456
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.70 E-value=12 Score=40.57 Aligned_cols=60 Identities=13% Similarity=0.226 Sum_probs=48.5
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
+.|+|.++..|.|++||--.-..-..+.+....|..|....+|+++++.+.. .+.+-|++
T Consensus 573 sGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~ 632 (776)
T COG5167 573 SGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP 632 (776)
T ss_pred CceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence 4599999999999999965544445566777899999999999998888765 78888764
No 457
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.49 E-value=5.7 Score=39.02 Aligned_cols=63 Identities=14% Similarity=0.190 Sum_probs=48.3
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCeEEEEE-------e-------cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTGICTAVL-------R-------GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l-------~-------~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
..++++|++...+|.+++||+.+++.+..- . .....|..+.++.+|.-|++-+ +|..+.|+.+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 346889999999999999999987765432 1 3556788888888888777665 4678888764
No 458
>PHA02790 Kelch-like protein; Provisional
Probab=84.34 E-value=18 Score=40.24 Aligned_cols=143 Identities=8% Similarity=0.047 Sum_probs=69.2
Q ss_pred CCCCEEEEEeCC--CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEEcCC
Q 040062 23 PGALRFATGGGD--HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ---VILIHEKKP 97 (689)
Q Consensus 23 pdg~~Latgs~D--g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg---~I~iwdl~~ 97 (689)
-++.+.+.||.+ ..+..||... .....+..+.........+.+ +|+..+.|+.++ .+..||..+
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~---------n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~ 385 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGD---------AAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNH 385 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCC---------CeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCC
Confidence 356667777753 3466777543 112333333221211222222 577777777653 366677655
Q ss_pred CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE--EecCCCCeEEEEE
Q 040062 98 GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV--LRGHSSLVKGVAW 175 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~--l~~h~~~V~~l~~ 175 (689)
+ .|.....+.........+.+ ++++.+.| |.+.+||..+.+.... +....... +++.
T Consensus 386 ~---------------~W~~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v 444 (480)
T PHA02790 386 D---------------QWQFGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDNP-ELII 444 (480)
T ss_pred C---------------EEEeCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEeEcCCCCCCcccc-EEEE
Confidence 3 34443333211111222222 46666665 3577899877654322 22111222 2222
Q ss_pred ccCCCEEEEEeCC-----CeEEEEECCC
Q 040062 176 DPIGSFIASQSDD-----KTVIIWRTSD 198 (689)
Q Consensus 176 spdg~~las~s~D-----g~I~iwd~~~ 198 (689)
-+++..+.|+.+ .++..||..+
T Consensus 445 -~~~~IYviGG~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 445 -VDNKLLLIGGFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred -ECCEEEEECCcCCCcccceEEEEECCC
Confidence 256777777754 2466666654
No 459
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=84.33 E-value=39 Score=36.80 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=45.2
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.++|.++..|.|++||--..+....+ ......|..+..+.+|++|++.| ...+.+-|+.
T Consensus 574 GyIa~as~kGDirLyDRig~rAKtal-P~lG~aIk~idvta~Gk~ilaTC-k~yllL~d~~ 632 (776)
T COG5167 574 GYIAAASRKGDIRLYDRIGKRAKTAL-PGLGDAIKHIDVTANGKHILATC-KNYLLLTDVP 632 (776)
T ss_pred ceEEEecCCCceeeehhhcchhhhcC-cccccceeeeEeecCCcEEEEee-cceEEEEecc
Confidence 69999999999999995443333333 34577899999999999988877 4477777765
No 460
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=84.15 E-value=4.1 Score=40.04 Aligned_cols=66 Identities=9% Similarity=0.169 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEEe------cc-------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFVA------KH-------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~~------~~-------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
.+.++++-..+|.+++||+.+++.+... .. .....|..+.++.+|.-|++-+ +|..+.|+.+-+..
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W 99 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCW 99 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccccee
Confidence 3478999999999999999988654432 11 2346789999999998777766 68899998765443
No 461
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.21 E-value=22 Score=43.15 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=25.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
.....++|+|.-+++|.+...|.|.+|-..
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEeccc
Confidence 345678999999999999999999999654
No 462
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.58 E-value=62 Score=33.23 Aligned_cols=208 Identities=13% Similarity=0.154 Sum_probs=105.7
Q ss_pred eEEEEEEcCCCCEEEEEeC------------CCeEEEEeCCcCCCCCCCCcccceeeeeecC------CCCcEEEEEEcC
Q 040062 15 QIFSIDVQPGALRFATGGG------------DHKVRIWNMKSVGKNFENDESTQRLLATLRD------HFGSVNCVRWAK 76 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~------------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~v~fsp 76 (689)
.|+.+.+..++.+.+.=++ .-+|.+||+.+ .+.++++.- ..+.++.+++..
T Consensus 2 sV~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t-----------~~li~~~~~p~~~~~~~s~lndl~VD~ 70 (287)
T PF03022_consen 2 SVQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKT-----------NQLIRRYPFPPDIAPPDSFLNDLVVDV 70 (287)
T ss_dssp -EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTT-----------TCEEEEEE--CCCS-TCGGEEEEEEEC
T ss_pred cccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCC-----------CcEEEEEECChHHcccccccceEEEEc
Confidence 4788889888876664221 13799999987 455555532 245688888876
Q ss_pred CC-----CEEE-EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceE---EEEEecCCCCEEEEEEcC---CCCEEEEEe
Q 040062 77 HG-----RYIA-SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV---AMTLRGHTADVVDLNWSP---DDSILASGS 144 (689)
Q Consensus 77 dg-----~~La-sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~l~~sp---dg~~Lasgs 144 (689)
.. .+.. +=+..+-|.|+|+.++..-......-..+...... -..+. ....+..++.++ +++.|....
T Consensus 71 ~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~-~~dg~~gial~~~~~d~r~LYf~~ 149 (287)
T PF03022_consen 71 RDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQ-WPDGIFGIALSPISPDGRWLYFHP 149 (287)
T ss_dssp TTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEE-ETTSEEEEEE-TTSTTS-EEEEEE
T ss_pred cCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEe-cCCCccccccCCCCCCccEEEEEe
Confidence 22 2222 22334579999999874321111100000000000 00111 123377777766 666777665
Q ss_pred CCCeEEEEEcCC-----C---------eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc
Q 040062 145 LDNTIHIWNMST-----G---------ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 145 ~Dg~I~vwd~~~-----~---------~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~ 210 (689)
..+ -++|.+.+ . ..+..+-...+...+++++++|.++++--..+.|..|+..+.-....+..-..
T Consensus 150 lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~ 228 (287)
T PF03022_consen 150 LSS-RKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQ 228 (287)
T ss_dssp TT--SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE
T ss_pred CCC-CcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEE
Confidence 443 22232211 1 11122211124556789999999999999999999999876221111111111
Q ss_pred ccCCcccEEEEEEcC--CCCeEEEecC
Q 040062 211 KSLGSTFFRRLGWSP--CGHFITTTHG 235 (689)
Q Consensus 211 ~~~~~~~i~~l~~sp--dg~~l~~~~~ 235 (689)
......+...+.+.+ +|...+.++.
T Consensus 229 d~~~l~~pd~~~i~~~~~g~L~v~snr 255 (287)
T PF03022_consen 229 DPRTLQWPDGLKIDPEGDGYLWVLSNR 255 (287)
T ss_dssp -CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred cCceeeccceeeeccccCceEEEEECc
Confidence 111244578889988 7777776654
No 463
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=81.97 E-value=58 Score=37.44 Aligned_cols=32 Identities=13% Similarity=0.269 Sum_probs=25.4
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
.-...|...+||.|.+.++....+..|.+++.
T Consensus 110 ~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k 141 (1243)
T COG5290 110 KVSNGIVAASWSADEKTWCVVTSTREILLFDK 141 (1243)
T ss_pred cccCceEEEeeccCCceEEEEEcCceEEEEec
Confidence 34567889999999998877777888888764
No 464
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=81.83 E-value=77 Score=33.81 Aligned_cols=150 Identities=14% Similarity=0.213 Sum_probs=86.7
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEc----CCCCE--EEEEeC-C---CeEEE
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA----KHGRY--IASGSD-D---QVILI 92 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs----pdg~~--Lasgs~-D---g~I~i 92 (689)
|...+++....++-+.+||++ ++.+..+. .+.++.|..- -+|+. ||.++. + ..|++
T Consensus 66 p~kSlIigTdK~~GL~VYdL~------------Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~ 131 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD------------GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRL 131 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT------------S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEE
T ss_pred cccceEEEEeCCCCEEEEcCC------------CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEE
Confidence 345678888888999999998 46666664 2344444332 13442 444443 2 46999
Q ss_pred EEcCCCCCc-cccCCCCCCCcccceEEEEEecCCCCEEEEEEc--C-CCC-EEEEEeCCCeEEEEEcC---CC----eEE
Q 040062 93 HEKKPGSGT-TEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--P-DDS-ILASGSLDNTIHIWNMS---TG----ICT 160 (689)
Q Consensus 93 wdl~~~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--p-dg~-~Lasgs~Dg~I~vwd~~---~~----~~~ 160 (689)
|.++..... ..+.... . .+......+..+|+. + ++. +++....+|.+..|.+. ++ +.+
T Consensus 132 f~id~~~g~L~~v~~~~-------~---p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV 201 (381)
T PF02333_consen 132 FRIDPDTGELTDVTDPA-------A---PIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV 201 (381)
T ss_dssp EEEETTTTEEEE-CBTT-------C----EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE
T ss_pred EEecCCCCcceEcCCCC-------c---ccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE
Confidence 988753211 1110000 0 011122346677763 3 354 66777889988888764 23 456
Q ss_pred EEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 161 AVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
+.|.. .+.+.+|..+....+|+.+-+|.-|.-|+.+
T Consensus 202 R~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Ae 237 (381)
T PF02333_consen 202 REFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAE 237 (381)
T ss_dssp EEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESS
T ss_pred EEecC-CCcceEEEEecccCCEEEecCccEEEEEecC
Confidence 77763 4578999999888899999998766666654
No 465
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=81.46 E-value=53 Score=31.66 Aligned_cols=110 Identities=11% Similarity=0.044 Sum_probs=61.1
Q ss_pred CCCEEEEEeCC--CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 77 HGRYIASGSDD--QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNM 154 (689)
Q Consensus 77 dg~~Lasgs~D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~ 154 (689)
+|.++.+.+.- ..|++||+.+++...+-... + -.+ ....++.+ ...+.+-.-.++.-.++|.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~---------~~~--FgEGit~~----gd~~y~LTw~egvaf~~d~ 118 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-P---------DTV--FGEGITKL----GDYFYQLTWKEGVAFKYDA 118 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-C---------ccc--cccceeec----cceEEEEEeccceeEEECh
Confidence 55777776654 46999999987432111000 0 000 01112211 0112222345788889999
Q ss_pred CCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 155 STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 155 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
.+.+++..+. ..+.-++++.+ ++.|+.++...+++.-|-.++....++
T Consensus 119 ~t~~~lg~~~-y~GeGWgLt~d--~~~LimsdGsatL~frdP~tfa~~~~v 166 (262)
T COG3823 119 DTLEELGRFS-YEGEGWGLTSD--DKNLIMSDGSATLQFRDPKTFAELDTV 166 (262)
T ss_pred HHhhhhcccc-cCCcceeeecC--CcceEeeCCceEEEecCHHHhhhcceE
Confidence 9988888776 44555777644 555666655557777776665544443
No 466
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=81.33 E-value=28 Score=35.57 Aligned_cols=53 Identities=11% Similarity=0.261 Sum_probs=37.4
Q ss_pred CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe------CCCeEEEEEcCCC
Q 040062 35 HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS------DDQVILIHEKKPG 98 (689)
Q Consensus 35 g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs------~Dg~I~iwdl~~~ 98 (689)
..|++||... .+-..--.+-.+.|++|.|..+.++++.|. ....+..||+.+.
T Consensus 16 ~~lC~yd~~~-----------~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~ 74 (281)
T PF12768_consen 16 PGLCLYDTDN-----------SQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQ 74 (281)
T ss_pred CEEEEEECCC-----------CEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCC
Confidence 4699999876 232233334678999999997777777764 3456888888765
No 467
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.21 E-value=13 Score=34.88 Aligned_cols=31 Identities=23% Similarity=0.484 Sum_probs=25.3
Q ss_pred CCEEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 040062 126 ADVVDLNWSPDD------SILASGSLDNTIHIWNMST 156 (689)
Q Consensus 126 ~~V~~l~~spdg------~~Lasgs~Dg~I~vwd~~~ 156 (689)
..|..++|||-| .+|++...++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999943 3788889999999998653
No 468
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=81.11 E-value=82 Score=33.69 Aligned_cols=53 Identities=8% Similarity=0.016 Sum_probs=26.3
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCeEEEEEecCCCCe--EEEEEccCCCEEEEEeCC
Q 040062 136 DDSILASGSLD-----------NTIHIWNMSTGICTAVLRGHSSLV--KGVAWDPIGSFIASQSDD 188 (689)
Q Consensus 136 dg~~Lasgs~D-----------g~I~vwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~las~s~D 188 (689)
++.+.+.|+.+ ..+..||..+.+....-....... .+....-++++++.|+.+
T Consensus 84 ~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 84 DGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 56667777643 247788987755433211001111 111211357777777653
No 469
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=80.32 E-value=5.9 Score=45.33 Aligned_cols=152 Identities=14% Similarity=0.144 Sum_probs=90.5
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCC
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGS 106 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~ 106 (689)
.+..|+.++.|.|+..... ................+.++.+++. -|..|.-||++-.|--..... +
T Consensus 549 Tic~gtq~ssisissss~~-------s~ke~~~~~~spe~~~v~~l~~ss~--Slgagl~dgt~a~y~rap~gS---w-- 614 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLD-------SIKEVTSEPPSPEHESVKLLLFSSG--SLGAGLIDGTLAVYGRAPSGS---W-- 614 (925)
T ss_pred cccccCccceeEEeeccCC-------cccceeccCCCCchhhhhhhhcccc--ccccCccCCccccccCCCCCC---C--
Confidence 4677888999999987620 0112222233344456777777753 244555566665553322210 0
Q ss_pred CCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec---CCCCeEEEEEccCCCEEE
Q 040062 107 GEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG---HSSLVKGVAWDPIGSFIA 183 (689)
Q Consensus 107 ~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~---h~~~V~~l~~spdg~~la 183 (689)
+. .....+.....+|..++|..| ++-++.+|.|.++...+......+.. |...|+++.+...+-+++
T Consensus 615 ----d~---ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~~leahqee~~~Vthm~~~~~gVwva 684 (925)
T KOG3522|consen 615 ----DG---EPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSWDLEAHQEEAHSVTHMLYLDNGVWVA 684 (925)
T ss_pred ----CC---CCccccccCCccccchhhhhc---eeeeecCCceEEEechhccccchhHHHHhhcceEEEEEeeCCceEEE
Confidence 00 011122234567788887643 56677899999999988766655544 456799999887777777
Q ss_pred EEeCCCeEEEEECCCCccee
Q 040062 184 SQSDDKTVIIWRTSDWSLAH 203 (689)
Q Consensus 184 s~s~Dg~I~iwd~~~~~~~~ 203 (689)
..+.| .+++++..+..-.+
T Consensus 685 fasG~-~~rlfhtetl~hlq 703 (925)
T KOG3522|consen 685 FASGD-EERLFHTETLWHLQ 703 (925)
T ss_pred EcCCC-EEEEecccccCCcc
Confidence 77666 67777665544333
No 470
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=80.24 E-value=75 Score=32.64 Aligned_cols=60 Identities=10% Similarity=0.055 Sum_probs=40.9
Q ss_pred eEEEEEcCCCeEEEEEec------CCCCeEEEEEccCC-----CEEEEE-eCCCeEEEEECCCCcceeeccC
Q 040062 148 TIHIWNMSTGICTAVLRG------HSSLVKGVAWDPIG-----SFIASQ-SDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 148 ~I~vwd~~~~~~~~~l~~------h~~~V~~l~~spdg-----~~las~-s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
.|.+||+.+.+.++.+.- ..+.+..+.++... .++..+ +..+-|.+||+.+++.-+....
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~ 106 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHN 106 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETC
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecC
Confidence 788899999988887653 24567788887632 233333 3446899999998776655544
No 471
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=80.16 E-value=69 Score=32.23 Aligned_cols=195 Identities=11% Similarity=0.028 Sum_probs=0.0
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 129 VDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 129 ~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
.+++-.+||..-+++...+.|--.|..+++....--+....-..|...|||..-++-+.. -|.-.|-++.+...-.-.
T Consensus 65 ~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp- 142 (353)
T COG4257 65 FDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP- 142 (353)
T ss_pred cccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc-
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 209 WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
............|.+.|+.-++... ...--++........--......-+.++..|++
T Consensus 143 --~~~a~~nlet~vfD~~G~lWFt~q~-----G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG--------------- 200 (353)
T COG4257 143 --LEHADANLETAVFDPWGNLWFTGQI-----GAYGRLDPARNVISVFPAPQGGGPYGICATPDG--------------- 200 (353)
T ss_pred --cccCCCcccceeeCCCccEEEeecc-----ccceecCcccCceeeeccCCCCCCcceEECCCC---------------
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccC-CCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFF-TQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
.+.++.-.++.|-..|...+..-....... ......+--+|.|+.-++....+.++.||
T Consensus 201 ------------------svwyaslagnaiaridp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfd 260 (353)
T COG4257 201 ------------------SVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFD 260 (353)
T ss_pred ------------------cEEEEeccccceEEcccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeC
No 472
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=80.15 E-value=1e+02 Score=36.56 Aligned_cols=124 Identities=16% Similarity=0.117 Sum_probs=78.9
Q ss_pred cEEEEEEcC----C---CCEEEEEeC----CCeEEEEEcCCCCCc--ccc---CC-----CCCCCcccceEEEEEecCCC
Q 040062 68 SVNCVRWAK----H---GRYIASGSD----DQVILIHEKKPGSGT--TEF---GS-----GEPPDIENWKVAMTLRGHTA 126 (689)
Q Consensus 68 ~V~~v~fsp----d---g~~Lasgs~----Dg~I~iwdl~~~~~~--~~~---~~-----~~~~~~~~~~~~~~l~~h~~ 126 (689)
.++.+.|-+ . -..|++.+. ...|.-|.+...... ..| ++ .+......|+....+. ...
T Consensus 182 ~LthL~ils~~~~~~~~p~Ili~~~~~~~~~SiI~RweL~~~~~~lh~~F~ql~s~~~~~~~~~~~~~l~~~~~i~-~~~ 260 (753)
T PF11635_consen 182 QLTHLEILSPTPDKDSAPEILIVYSSPNTPSSIIERWELREEQQPLHPAFQQLGSKKNSSSEPPPTYRLRRLDDIT-LNK 260 (753)
T ss_pred cceeEEEeccCCCCCCCCeEEEEEEcCCCCCcEEEEEEEEccCcccchhhhhcCCCCcCCCCCCCceeEEEecccc-cCC
Confidence 567777765 1 124444432 347999999875321 111 11 1233444555555554 345
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE----ec---------------CCCCeEEEEEccCCCEEEEEeC
Q 040062 127 DVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL----RG---------------HSSLVKGVAWDPIGSFIASQSD 187 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l----~~---------------h~~~V~~l~~spdg~~las~s~ 187 (689)
.|.+++...-+.+++....||+|.++|-.+.+.+... .. +-..+..++|+|.+-.++.-..
T Consensus 261 ~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~~ 340 (753)
T PF11635_consen 261 RVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQIDE 340 (753)
T ss_pred eEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEec
Confidence 6888888888889999999999999998876544333 10 1113345789999988888888
Q ss_pred CCeEE
Q 040062 188 DKTVI 192 (689)
Q Consensus 188 Dg~I~ 192 (689)
+|.+.
T Consensus 341 ~~~~~ 345 (753)
T PF11635_consen 341 DGKTK 345 (753)
T ss_pred CCCce
Confidence 88866
No 473
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=79.92 E-value=31 Score=36.59 Aligned_cols=164 Identities=12% Similarity=0.186 Sum_probs=89.0
Q ss_pred CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEeCCCe-
Q 040062 13 GMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGSDDQV- 89 (689)
Q Consensus 13 g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~Dg~- 89 (689)
|.+|+++.|--|--+++|--.---+.+-|+... ..++.+..++-. | .+--.+| ++.+|-.|..+|.
T Consensus 427 gERIYAvRf~gdv~yiVTfrqtDPlfviDlsNP--------enPkvlGeLKIP-G--fS~YLHpigen~~lGvG~~~g~v 495 (603)
T COG4880 427 GERIYAVRFVGDVLYIVTFRQTDPLFVIDLSNP--------ENPKVLGELKIP-G--FSEYLHPIGENRLLGVGAYQGGV 495 (603)
T ss_pred CceEEEEEEeCceEEEEEEeccCceEEEEcCCC--------CCCceeEEEecC-C--chhhccccCCCcEEEeecccCCc
Confidence 368999999988888888776556788888752 235555555421 1 1112344 5667788888886
Q ss_pred -EEEEEcCCCCCccccCCCCCCCcccceEEE----EEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 90 -ILIHEKKPGSGTTEFGSGEPPDIENWKVAM----TLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 90 -I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~----~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
|.+||+..... +....++.... .+..| .+..|.+.-. +++-+...|. |+.++.+..+..-
T Consensus 496 KiSLFdiSdl~~--------PkEv~~y~l~~~wspvf~dh----HAFl~d~~~~ifFlPay~~gy--if~iedg~kl~k~ 561 (603)
T COG4880 496 KISLFDISDLAA--------PKEVSNYTLSNAWSPVFYDH----HAFLYDPEAEIFFLPAYLGGY--IFFIEDGSKLRKR 561 (603)
T ss_pred eEEEEeccCCCC--------chhhhheehhhhcchhhhcc----ceeecCCcccEEEecccCccE--EEEEecCceeeeh
Confidence 45677765421 11111111111 11122 2333444433 3344555555 5555566555554
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceee
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
..|...+...-|..|--+++.+ . .+.++|-++++.+.+
T Consensus 562 ~e~k~na~RA~fi~dylY~vg~--~-ev~~ldenswe~Vge 599 (603)
T COG4880 562 AERKLNADRAFFIKDYLYLVGG--N-EVWKLDENSWEVVGE 599 (603)
T ss_pred hhhcccceeeEEecceEEEecc--c-eeEEeccchHhhhhh
Confidence 4566665555565444344333 2 577777777766543
No 474
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.75 E-value=56 Score=35.77 Aligned_cols=101 Identities=14% Similarity=0.190 Sum_probs=59.5
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
.|..+..++.|..++-.+.+|.+.++=-+.+..-..++.... .|.|-.++-+.+++...
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~------~v~CRt~~i~~~~ftss--------------- 163 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKS------TVNCRTTPVAERFFTSS--------------- 163 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCc------eEEEEeecccceeeccC---------------
Confidence 466777888999999888898766654344333333322111 12332232222222111
Q ss_pred CCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 249 GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 249 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
..-.+..++|+|+.. ....|..-..|+.|++||+...+.
T Consensus 164 -----------~~ltl~Qa~WHP~S~------------------------------~D~hL~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 164 -----------TSLTLKQAAWHPSSI------------------------------LDPHLVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred -----------CceeeeeccccCCcc------------------------------CCceEEEEecCcEEEEEecCCcch
Confidence 122456678888741 235777788999999999988777
Q ss_pred eEE
Q 040062 329 LFV 331 (689)
Q Consensus 329 ~~~ 331 (689)
+..
T Consensus 203 lyl 205 (741)
T KOG4460|consen 203 LYL 205 (741)
T ss_pred hhc
Confidence 644
No 475
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.46 E-value=42 Score=33.45 Aligned_cols=88 Identities=13% Similarity=0.124 Sum_probs=49.2
Q ss_pred EEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-C--CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 149 IHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-D--KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
-.+||+.+++....-...+....+-.+.+||++|.+|+. | ..+++++..+.............-....+.....-.+
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~ 127 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP 127 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence 357888876654333333444445567899999998874 2 3578887543010001100000011223345667788
Q ss_pred CCCeEEEecCC
Q 040062 226 CGHFITTTHGF 236 (689)
Q Consensus 226 dg~~l~~~~~~ 236 (689)
||+.|+.++..
T Consensus 128 DG~vlIvGG~~ 138 (243)
T PF07250_consen 128 DGRVLIVGGSN 138 (243)
T ss_pred CCCEEEEeCcC
Confidence 99999988764
No 476
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=79.12 E-value=47 Score=29.63 Aligned_cols=123 Identities=11% Similarity=0.007 Sum_probs=72.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-----CCCEEEEEeCCCeEEE
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-----HGRYIASGSDDQVILI 92 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-----dg~~Lasgs~Dg~I~i 92 (689)
.-.|.....-|++++.-|+|.|++.......... ....+..|. -...|++|+-.+ +...|+.|+. ..+..
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~lla 77 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---QDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLA 77 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc---ccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEE
Confidence 3456666677888888899999997752211110 123334443 456677776543 3456777765 57999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc---CCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS---PDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s---pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
||+..+... . .+.-...|.++.+- ....-|+..+.+..|.-||..-.+.....
T Consensus 78 YDV~~N~d~-----------------F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 78 YDVENNSDL-----------------F-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEcccCchh-----------------h-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence 999887421 1 11223456666552 22234555555678888887555554443
No 477
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=79.09 E-value=28 Score=39.50 Aligned_cols=90 Identities=21% Similarity=0.298 Sum_probs=47.7
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCC---Cc-cccCCCCC------CCcccceEEEEEecCCCCEEEEEEcC----CCCEEE
Q 040062 76 KHGRYIASGSDDQVILIHEKKPGS---GT-TEFGSGEP------PDIENWKVAMTLRGHTADVVDLNWSP----DDSILA 141 (689)
Q Consensus 76 pdg~~Lasgs~Dg~I~iwdl~~~~---~~-~~~~~~~~------~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~La 141 (689)
.+...|+.+..||.+......... .. ......+. ...-.+. ..........+..++++. +..+|+
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 234 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWS-YRGDNSSSSVAASLAVSSSEINDDTFLF 234 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT----SSSS---EEEEEE-----ETTTEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcc-cccCCCCCCccceEEEecceeCCCCEEE
Confidence 466678888899998888877521 10 00000000 0000000 001111223455666666 677999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 142 SGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
+.+.|+.+++||+.+++++....-.
T Consensus 235 tl~~D~~LRiW~l~t~~~~~~~~~~ 259 (547)
T PF11715_consen 235 TLSRDHTLRIWSLETGQCLATIDLL 259 (547)
T ss_dssp EEETTSEEEEEETTTTCEEEEEETT
T ss_pred EEeCCCeEEEEECCCCeEEEEeccc
Confidence 9999999999999999998776543
No 478
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=78.68 E-value=8.9 Score=40.78 Aligned_cols=171 Identities=11% Similarity=0.049 Sum_probs=100.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC----cEE-EEEEcCCCCEEEEEeCCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG----SVN-CVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~----~V~-~v~fspdg~~Lasgs~Dg 88 (689)
+.|..+-..|||+.|..-+. ..+.|+++....-. .+.+. ....+ .|+ .+..-..|.-|..++.||
T Consensus 221 ~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~-------~rkl~--~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG 290 (733)
T COG4590 221 SDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQ-------IRKLV--DDSPGDSRHQVTEQLYLLSGGFSLLVVHEDG 290 (733)
T ss_pred cchHhhEECCCCCEEEEecC-CeEEEEeecccccc-------hhhhh--hcCCCchHHHHHHHHHHHhCceeEEEEcCCC
Confidence 45777888999998887766 68899988752111 01111 11111 111 112233566788888899
Q ss_pred eEEEE-EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 89 VILIH-EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 89 ~I~iw-dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.|.-| |...+.. .....++.++-....+..+.-..+.+-+++-+..|++.++.....+.+..-+ -.
T Consensus 291 ~vsQWFdvr~~~~------------p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-~~ 357 (733)
T COG4590 291 LVSQWFDVRRDGQ------------PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-AY 357 (733)
T ss_pred ceeeeeeeecCCC------------CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-hh
Confidence 88776 4443311 1113333443334445555444445577777888888888754443332222 23
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
..+.-++++|.+.+|++-. .|.++++.+++....-....-
T Consensus 358 ~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~PeiswsaL 397 (733)
T COG4590 358 QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNPEISWSAL 397 (733)
T ss_pred cCcceeeeCcccchheeec-CCceEEEEecCCCCCccHHHh
Confidence 3556789999999987654 568999999876655444433
No 479
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=78.01 E-value=50 Score=29.41 Aligned_cols=121 Identities=10% Similarity=0.053 Sum_probs=70.7
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC---C--CCEEEEEeC
Q 040062 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP---D--DSILASGSL 145 (689)
Q Consensus 71 ~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp---d--g~~Lasgs~ 145 (689)
.-+|......|+.++.-|.|.|++.........- .-..+..|. -...|++|+-.+ + ...|+.|+
T Consensus 3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~---------~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt- 71 (136)
T PF14781_consen 3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGR---------QDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGT- 71 (136)
T ss_pred EEEeCCCceeEEEEecCCEEEEECCCcccccccc---------ccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEec-
Confidence 3456666668888889999999987754321100 002233333 455677776433 2 33566655
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc---CCCEEEEEeCCCeEEEEECCCCccee
Q 040062 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP---IGSFIASQSDDKTVIIWRTSDWSLAH 203 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp---dg~~las~s~Dg~I~iwd~~~~~~~~ 203 (689)
...|..||+....-+.... -...|.++.+-. ...-|+..+.+..|.-||....+...
T Consensus 72 ~t~llaYDV~~N~d~Fyke-~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 72 QTSLLAYDVENNSDLFYKE-VPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFW 131 (136)
T ss_pred cceEEEEEcccCchhhhhh-CccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEE
Confidence 5789999998765554333 346677776633 12234444446678777775544433
No 480
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=77.78 E-value=1.6e+02 Score=35.02 Aligned_cols=178 Identities=13% Similarity=0.117 Sum_probs=103.5
Q ss_pred eeeecCceEEEEEEc---C----CCCEEEEEeCCCeEEEEeCCcCCC----CCCCCcccceeeeeecCC---CCcEEEEE
Q 040062 8 WVRHEGMQIFSIDVQ---P----GALRFATGGGDHKVRIWNMKSVGK----NFENDESTQRLLATLRDH---FGSVNCVR 73 (689)
Q Consensus 8 ~~~H~g~~I~si~~s---p----dg~~Latgs~Dg~V~IWd~~~~~~----~~~~~~~~~~~~~~l~~h---~~~V~~v~ 73 (689)
|.-+.+.+|..|+|. . ..++|++=. ...+.|+...-... ......-....+..+..+ ..+...|+
T Consensus 74 w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~ 152 (765)
T PF10214_consen 74 WSIDDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVA 152 (765)
T ss_pred eEcCCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEE
Confidence 443566799999999 3 224566544 46788888332111 000011123444455422 23678899
Q ss_pred EcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-------CCCCEEEEEEcCCCCEEEEEeC
Q 040062 74 WAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-------HTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 74 fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~l~~spdg~~Lasgs~ 145 (689)
|+| +.+.||.....|.-.||++...... ....|.......+ .......+.|.++.+.|+.++.
T Consensus 153 FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~---------~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r 223 (765)
T PF10214_consen 153 FNPWDQRQFAIVDEKGNWSVWDIKGRPKR---------KSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNR 223 (765)
T ss_pred eccCccceEEEEeccCcEEEEEecccccc---------CCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcC
Confidence 998 5668999999999999999322110 0011111111111 1134567889888888887764
Q ss_pred CCeEEEEEcCCCeEEE-E-EecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCC
Q 040062 146 DNTIHIWNMSTGICTA-V-LRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~-~-l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~ 198 (689)
..+.++|+.+..... . .......|..+.-++. +..|+..+ ..|...++..
T Consensus 224 -~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 224 -SKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS--KEIIWLDVKS 277 (765)
T ss_pred -CceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec--CeEEEEEccC
Confidence 678999998876533 2 2224567888888876 23333322 4677777765
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=77.21 E-value=16 Score=41.31 Aligned_cols=218 Identities=10% Similarity=0.050 Sum_probs=100.2
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...+.++.-+|.+..++.++.||+|++|++.............. -..+.|...|-+.+++.. ....|
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~p-------~~nlv~tnhgl~~~tsdr------r~la~ 80 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAKP-------KENLVFTNHGLVTATSDR------RALAW 80 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcCC-------ccceeeeccceEEEeccc------hhhee
Confidence 34567888899999999999999999999865443222221111 133455555555554321 11112
Q ss_pred ec-CCceeeeeecCC-CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 247 ER-GEWAATFDFLGH-NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 247 ~~-~~~~~~~~l~~h-~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.. +..+..+.+... .....++.+.|....+.....+..... .++...... ..++=.+--.-..|.+-|+.
T Consensus 81 ~~dgvvqqqfdyndqsekefss~~cdptaqnvvgtlcggv~q~------dcclrr~i~--knkfe~tyv~pshvilkdls 152 (1636)
T KOG3616|consen 81 KEDGVVQQQFDYNDQSEKEFSSILCDPTAQNVVGTLCGGVEQF------DCCLRRGIL--KNKFELTYVAPSHVILKDLS 152 (1636)
T ss_pred eccCcchhhccccchhhhhccceecCchhhhhhhhhccceeee------hHHHHhHHH--hccceeEEeccceeeeeccc
Confidence 11 111222222211 122233333333211110000000000 000000000 00111111122345566666
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC-----ceeeee
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG-----RLANLA 399 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~-----~I~~l~ 399 (689)
++.....+.. ..-.|..+..--..+||+.-. ..+|.+=|+++..+....+ .-.|+|.. .-.|+.
T Consensus 153 n~trt~l~s~-~g~aidelkilgkdryli~~t-s~siii~d~es~rfsei~w---------qgsgg~ekfffd~~n~cli 221 (1636)
T KOG3616|consen 153 NDTRTNLISH-KGLAIDELKILGKDRYLIAHT-SESIIIADLESNRFSEIAW---------QGSGGHEKFFFDFENCCLI 221 (1636)
T ss_pred CCceEeeeec-CCcchhhhhhccccceEEeec-cccEEEeecccchhhhhhc---------ccCCCcceeeeecCcEEEE
Confidence 6554443332 122344444444456665443 5578888888766543222 22333332 236778
Q ss_pred cCchhhhhHhhccccce
Q 040062 400 ETPAQLLLEAASAKETT 416 (689)
Q Consensus 400 ~Spdg~~Las~s~DG~v 416 (689)
|+.....|+.-+.|+++
T Consensus 222 ~nageltlveyg~d~sl 238 (1636)
T KOG3616|consen 222 FNAGELTLVEYGNDDSL 238 (1636)
T ss_pred EecCeeEEEEecCCCcc
Confidence 88877777777777777
No 482
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=76.67 E-value=38 Score=34.61 Aligned_cols=123 Identities=9% Similarity=0.107 Sum_probs=71.7
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe------CCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS------DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
..|++||..+.+....-.+-.+.|..|.|..+.++++.|. ....+..||+.+..-...-........ ..+..
T Consensus 16 ~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ip--gpv~a 93 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIP--GPVTA 93 (281)
T ss_pred CEEEEEECCCCEeecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCC--CcEEE
Confidence 4699999988777666666678899999986666776664 355788899876543222111101111 12444
Q ss_pred EEEc-CCCCeEEEecCCCCCccccceeecCCceeeee-ecCCCCCEEEEEEcC
Q 040062 221 LGWS-PCGHFITTTHGFQKPRHSAPVLERGEWAATFD-FLGHNAPIIVVKFNH 271 (689)
Q Consensus 221 l~~s-pdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~-l~~h~~~v~~v~fsp 271 (689)
+.+. .|+..+..++........+..|+-..|...-. .......|..+.+-+
T Consensus 94 ~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i~~~~~~~~t~I~~l~~~~ 146 (281)
T PF12768_consen 94 LTFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSIGSDILGSGTTIRGLQVLP 146 (281)
T ss_pred EEeeccCCceEEEeceecCCCceEEEEcCCceEeccccccCCCCEEEEEEEEe
Confidence 5443 34443443333244455667778888876544 333345666665543
No 483
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=76.41 E-value=15 Score=24.84 Aligned_cols=40 Identities=25% Similarity=0.223 Sum_probs=28.1
Q ss_pred CCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecCCCCeEEEEE
Q 040062 135 PDDSILASGS-LDNTIHIWNMSTGICTAVLRGHSSLVKGVAW 175 (689)
Q Consensus 135 pdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~ 175 (689)
|++++|+++. .++.|.++|..+++.+..+... .....++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg-~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG-GYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC-CCCceEEe
Confidence 4677666554 5789999999999888887753 33345555
No 484
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=76.35 E-value=17 Score=34.21 Aligned_cols=30 Identities=13% Similarity=0.208 Sum_probs=25.3
Q ss_pred cEEEEEEcCCC------CEEEEEeCCCeEEEEEcCC
Q 040062 68 SVNCVRWAKHG------RYIASGSDDQVILIHEKKP 97 (689)
Q Consensus 68 ~V~~v~fspdg------~~Lasgs~Dg~I~iwdl~~ 97 (689)
.|..++|||.| .+||+.+.++.|.||....
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 78999999943 4889999999999997654
No 485
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=75.99 E-value=1.2e+02 Score=32.54 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=9.9
Q ss_pred CeEEEEEcCCCeEE
Q 040062 147 NTIHIWNMSTGICT 160 (689)
Q Consensus 147 g~I~vwd~~~~~~~ 160 (689)
..|.+||..+.+..
T Consensus 189 ~~v~~YD~~t~~W~ 202 (376)
T PRK14131 189 KEVLSYDPSTNQWK 202 (376)
T ss_pred ceEEEEECCCCeee
Confidence 35889998776544
No 486
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=75.28 E-value=1.2e+02 Score=32.32 Aligned_cols=108 Identities=14% Similarity=0.068 Sum_probs=55.9
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC--CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcccc
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH--FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~ 104 (689)
.+.++..+|.|.-.|.++ ...+.....- ...+.+-.+..+|+ |+.++.++.+..+|..++.
T Consensus 70 ~v~~~~~~G~i~A~d~~~-----------g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~----- 132 (370)
T COG1520 70 TVYVGTRDGNIFALNPDT-----------GLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGT----- 132 (370)
T ss_pred eEEEecCCCcEEEEeCCC-----------CcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCc-----
Confidence 344446777777777765 2222111111 11222222333676 6777888888888877663
Q ss_pred CCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 105 GSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
..-...... ..+..-..-.++ .+..++.++.+...|..+++......
T Consensus 133 ------------~~W~~~~~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 133 ------------LVWSRNVGGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred ------------EEEEEecCCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEe
Confidence 333333222 111111122233 33333467899999988888877655
No 487
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=74.38 E-value=1.3e+02 Score=32.22 Aligned_cols=195 Identities=15% Similarity=0.108 Sum_probs=94.4
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEc----cCCCE--EEEEe-CC---CeEEEEECCC--Cccee
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWD----PIGSF--IASQS-DD---KTVIIWRTSD--WSLAH 203 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~--las~s-~D---g~I~iwd~~~--~~~~~ 203 (689)
..++++....++-+.+||+ .|+.+..+. .+.+..+..- -.|+. |+.++ .+ .+|++|.+.. +. +.
T Consensus 67 ~kSlIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 4568888888999999999 566666664 2334433322 13432 44443 32 4799998753 32 22
Q ss_pred eccCcccc-cCCcccEEEEEE--cC-CCCeEEEecCCCCCccccceeecCCce----eeeeecCCCCCEEEEEEcCCccc
Q 040062 204 RTDGHWAK-SLGSTFFRRLGW--SP-CGHFITTTHGFQKPRHSAPVLERGEWA----ATFDFLGHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 204 ~~~~~~~~-~~~~~~i~~l~~--sp-dg~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~h~~~v~~v~fsp~~~~ 275 (689)
.+...... ......+..+|+ ++ +|.+.+......+......+....... ....|.. ...+..|.....
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe--- 218 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDE--- 218 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETT---
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecc---
Confidence 22211110 011122455554 44 466666555544444444444333221 1111211 224444444433
Q ss_pred cccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC-----CceEEecc-cCCCCeEEEEEc--c
Q 040062 276 RNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP-----RPLFVAKH-FFTQSVVDLSWS--P 347 (689)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~-----~~~~~~~~-~h~~~V~~l~~s--p 347 (689)
...|+.+-++.-|+-|+.+.. +.+..... .....|-.|++- .
T Consensus 219 ------------------------------~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~ 268 (381)
T PF02333_consen 219 ------------------------------TGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGS 268 (381)
T ss_dssp ------------------------------TTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-C
T ss_pred ------------------------------cCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecC
Confidence 368899999988888887632 11212211 123456667664 3
Q ss_pred CC-CeEEEEe-CCCcEEEEEeec
Q 040062 348 DG-YSLFACS-LDGTVANFHFEV 368 (689)
Q Consensus 348 dg-~~L~sgs-~DG~I~vwd~~~ 368 (689)
++ .||++.+ .+++..||+.+.
T Consensus 269 ~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 269 DGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp CC-EEEEEEEGGGTEEEEEESST
T ss_pred CCCeEEEEEcCCCCeEEEEecCC
Confidence 43 2555544 577899999764
No 488
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=74.33 E-value=1.1e+02 Score=33.51 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=40.1
Q ss_pred EecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE--EEEEe-----cCCCCeEEEEEccCC
Q 040062 121 LRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC--TAVLR-----GHSSLVKGVAWDPIG 179 (689)
Q Consensus 121 l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~--~~~l~-----~h~~~V~~l~~spdg 179 (689)
+...-..-+.|+|.||+++|++--..|.|++++..++.. +..+. .......+|+|+|+-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 333445688999999998777765569999998655432 21111 135678899999873
No 489
>PLN02153 epithiospecifier protein
Probab=73.98 E-value=1.2e+02 Score=31.82 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=10.5
Q ss_pred CeEEEEEcCCCeEEE
Q 040062 147 NTIHIWNMSTGICTA 161 (689)
Q Consensus 147 g~I~vwd~~~~~~~~ 161 (689)
..|.+||+.+.+-..
T Consensus 217 ~~v~~yd~~~~~W~~ 231 (341)
T PLN02153 217 NAVQFFDPASGKWTE 231 (341)
T ss_pred CceEEEEcCCCcEEe
Confidence 468899988765443
No 490
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.71 E-value=1.2e+02 Score=37.19 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=31.8
Q ss_pred cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 335 FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 335 ~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
.+..+|..+.....-..|++-+..|+|.+|++...-
T Consensus 240 ~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 240 SSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred CCCCcceeeEeccccceeeeeccCceEEEEEccCCC
Confidence 456789999999999999999999999999998743
No 491
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=73.61 E-value=12 Score=25.09 Aligned_cols=32 Identities=25% Similarity=0.369 Sum_probs=21.0
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCC---CeEEEE
Q 040062 62 LRDHFGSVNCVRWAKHGRYIASGSDD---QVILIH 93 (689)
Q Consensus 62 l~~h~~~V~~v~fspdg~~Lasgs~D---g~I~iw 93 (689)
+....+.-.+..|+|||++|+.++.. |...||
T Consensus 4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34455667889999999988876643 555555
No 492
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=72.57 E-value=1.1e+02 Score=33.23 Aligned_cols=160 Identities=14% Similarity=0.219 Sum_probs=0.0
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEc-------CCCeEEEEE-ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 125 TADVVDLNWSPDDSILASGSLDNTIHIWNM-------STGICTAVL-RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 125 ~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~-------~~~~~~~~l-~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
.....+.-+...+.-+++. |..+.||+. .++.....+ .++...+.++ ++.....|.|++|+-
T Consensus 26 ~~~~~~gi~~e~g~Aw~~~--d~~l~vW~Y~~~~~s~~~~~~~~~~~~~~~~~i~~v--------~lv~p~~G~v~f~~~ 95 (422)
T PF08801_consen 26 QSPCSMGIFPEIGRAWIVV--DNRLYVWNYSSTQSSPNDGSDFPLFDDGSSSSIPGV--------GLVKPKTGRVVFWES 95 (422)
T ss_dssp TTS-EEEEE-TTSEEEEEE--TTEEEEEE--SS--GG--EEEEE-----------SE--------EEEE-TT-EEEEES-
T ss_pred ccceEEEEEcccCEEEEEE--CCEEEEEeccCCCCCcCcccccceecCCCCCCCceE--------EEEEcCCCCEEeccc
Q ss_pred CCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccc
Q 040062 197 SDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRR 276 (689)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~ 276 (689)
-+............ +..++++. +......+......+.+
T Consensus 96 I~~~l~~~t~~~i~-------l~gv~~~~-------------------------------l~~~e~~~~~~~~~~~~--- 134 (422)
T PF08801_consen 96 ISHLLVLATPSQIS-------LLGVSYSE-------------------------------LLSGELSTSLTNVEPSG--- 134 (422)
T ss_dssp TT-TT--EEEE--------------------------------------------------------EEEEEEETTT---
T ss_pred chhhhhcCcccccc-------ccccceee-------------------------------ecCCceEEECCCCceEE---
Q ss_pred ccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC--CCceEEecccCC-----------------
Q 040062 277 NSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS--PRPLFVAKHFFT----------------- 337 (689)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~--~~~~~~~~~~h~----------------- 337 (689)
++.+..+|+|.+...+. +.....+.....
T Consensus 135 --------------------------------~I~~ts~GRif~~~~~~~~g~~~l~y~~~~~~~~~i~~~~~~~~~~~~ 182 (422)
T PF08801_consen 135 --------------------------------FIVSTSTGRIFFLGIRDSNGKYELSYQQLSGRCSKINHTSSSIFSSLL 182 (422)
T ss_dssp --------------------------------EEEEETT--EEEEEE-TTS-EEEEE-TT--------------------
T ss_pred --------------------------------EEEECCCCeEEEEeCCCCCCcEEEEEEcCcCCccccccccCceecccc
Q ss_pred ------CC-eEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 338 ------QS-VVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 338 ------~~-V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.. |.+++..+..+.|++.+.+|.|.+|++.
T Consensus 183 p~~~~~~~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~ 219 (422)
T PF08801_consen 183 PSFSDPRPKIVQVAVDPSRRLLYTLTSDGSIQVWDLG 219 (422)
T ss_dssp ---------EEEEEEETTTTEEEEEESSE-EEEEEE-
T ss_pred CCcccchhceeeEEecCCcCEEEEEeCCCcEEEEEEe
No 493
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.39 E-value=44 Score=33.33 Aligned_cols=121 Identities=18% Similarity=0.230 Sum_probs=65.8
Q ss_pred EEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-e
Q 040062 73 RWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN-T 148 (689)
Q Consensus 73 ~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg-~ 148 (689)
.|-+||++|.+|+.- ..+++++..... ....|......-.....--...--+||+.|+.|+.+. +
T Consensus 73 ~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~-----------~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t 141 (243)
T PF07250_consen 73 AFLPDGRLLQTGGDNDGNKAIRIFTPCTSD-----------GTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPT 141 (243)
T ss_pred CCCCCCCEEEeCCCCccccceEEEecCCCC-----------CCCCceECcccccCCCccccceECCCCCEEEEeCcCCCc
Confidence 466899999988762 357777654311 1122332221112233344445567999999988775 3
Q ss_pred EEEEEcCC-Ce-EEE--EEec-----CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 149 IHIWNMST-GI-CTA--VLRG-----HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 149 I~vwd~~~-~~-~~~--~l~~-----h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.-+|.-.. .. ... .+.. ....--.+...|+|++|+.+..+ -.|||..+.+.++.+.
T Consensus 142 ~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 142 YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 44554321 11 111 1110 11111245567899999888765 4577887776655543
No 494
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=71.89 E-value=1.4e+02 Score=31.46 Aligned_cols=53 Identities=8% Similarity=-0.001 Sum_probs=27.2
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCeEEEEEecCCCCeEE--EEEccCCCEEEEEeCC
Q 040062 136 DDSILASGSLD-----------NTIHIWNMSTGICTAVLRGHSSLVKG--VAWDPIGSFIASQSDD 188 (689)
Q Consensus 136 dg~~Lasgs~D-----------g~I~vwd~~~~~~~~~l~~h~~~V~~--l~~spdg~~las~s~D 188 (689)
++.+.+.|+.+ ..+..||..+.+-...-........+ .+..-++++.+.|+.+
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 56777777753 25778898776543321111111111 1112357777777654
No 495
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=70.72 E-value=1.6e+02 Score=31.93 Aligned_cols=139 Identities=13% Similarity=0.183 Sum_probs=80.3
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC----CCCEEEEEeCCCeEEEE
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP----DDSILASGSLDNTIHIW 152 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~Lasgs~Dg~I~vw 152 (689)
+...|+.|+..|.++||+...+... .+ ..+...+ -..+|..+..-. .....++.-.-..+.||
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~----------~~--~lllE~~-l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY 102 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQ----------PE--DLLLETQ-LKDPILQVECGKFVSGSEDLQLAVLHPRKLSVY 102 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCC----------Cc--cEEEEEe-cCCcEEEEEeccccCCCCcceEEEecCCEEEEE
Confidence 3468999999999999998543210 00 1222222 346777776532 23333444567788888
Q ss_pred EcCC--Ce-------EEEEEecCC--CCeEEEEEccC-----CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 153 NMST--GI-------CTAVLRGHS--SLVKGVAWDPI-----GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 153 d~~~--~~-------~~~~l~~h~--~~V~~l~~spd-----g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
.+.. +. .+..+..|. .....+++-|- ..+|++.+.||.+.+|+-+.......+.....
T Consensus 103 ~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~ll------ 176 (418)
T PF14727_consen 103 SVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLL------ 176 (418)
T ss_pred EEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCC------
Confidence 8732 11 223333343 23344554442 35899999999999999877554444443211
Q ss_pred cEEEEEEcCCCCeEEEecC
Q 040062 217 FFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~ 235 (689)
...+.|.+.-..+++++.
T Consensus 177 -PgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 177 -PGPLCYCPRTDSFVTASS 194 (418)
T ss_pred -CcCeEEeecCCEEEEecC
Confidence 234667776666666544
No 496
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=70.58 E-value=1.8e+02 Score=32.33 Aligned_cols=41 Identities=22% Similarity=0.370 Sum_probs=27.7
Q ss_pred CEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 127 DVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 127 ~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.+.++.+.+ ++.+|+++-.-..|...|.++++....+-.|.
T Consensus 272 H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 272 HINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp -EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred ccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 378888988 56666666666699999988888887776543
No 497
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=70.34 E-value=1.6e+02 Score=31.76 Aligned_cols=55 Identities=9% Similarity=0.056 Sum_probs=31.5
Q ss_pred EEEEEeCCCcEEEEeCCCCCceEEec--ccCCCCeEEEEEccCCCeEEEEeCCCcEEEE
Q 040062 308 VIAIGSQDRTITVWTTASPRPLFVAK--HFFTQSVVDLSWSPDGYSLFACSLDGTVANF 364 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~DG~I~vw 364 (689)
.++.++.+|.+.... ..++.-.... ..-....+.+.|.++++.++ .+.+|.|.-|
T Consensus 340 ~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G~il~~ 396 (398)
T PLN00033 340 EAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDGVLLRY 396 (398)
T ss_pred cEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCcEEEEe
Confidence 455666777666553 3444322222 12245688999987766554 5558877654
No 498
>PLN02153 epithiospecifier protein
Probab=69.98 E-value=1.1e+02 Score=31.99 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=16.0
Q ss_pred CCCEEEEEeCC-----------CeEEEEEcCCCeEE
Q 040062 136 DDSILASGSLD-----------NTIHIWNMSTGICT 160 (689)
Q Consensus 136 dg~~Lasgs~D-----------g~I~vwd~~~~~~~ 160 (689)
++++++.|+.+ ..|.+||+.+.+-.
T Consensus 137 ~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 137 ENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CCEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 56666776643 25778898776543
No 499
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=69.98 E-value=1.1e+02 Score=31.89 Aligned_cols=150 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC-----CeEEEEeCCcCCCCCCCCccccee----eeeecCCCCcEEEEEEcCCCCEEEEEeC-----CCe
Q 040062 24 GALRFATGGGD-----HKVRIWNMKSVGKNFENDESTQRL----LATLRDHFGSVNCVRWAKHGRYIASGSD-----DQV 89 (689)
Q Consensus 24 dg~~Latgs~D-----g~V~IWd~~~~~~~~~~~~~~~~~----~~~l~~h~~~V~~v~fspdg~~Lasgs~-----Dg~ 89 (689)
++.+++.|+.+ ..+..||+.. .+. ...-.-....-...+..-++++.+.|+. ...
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~-----------~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~ 140 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDE-----------SKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNK 140 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcC-----------CceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCce
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCeEEEEEec
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD----NTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D----g~I~vwd~~~~~~~~~l~~ 165 (689)
+..||+.++ .|..+..+......-..++.. ++++.+.|+.+ ..+.+||+.+.+....-..
T Consensus 141 v~~yd~~~~---------------~W~~~~~~p~~~r~~~~~~~~-~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 141 SYLFNLETQ---------------EWFELPDFPGEPRVQPVCVKL-QNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred EEEEcCCCC---------------CeeECCCCCCCCCCcceEEEE-CCEEEEEcCCCCccccceEEEecCCCeeEECCCC
Q ss_pred CCCC------eEEEEEccCCCEEEEEeCC-------------------------------------CeEEEEECCCCc
Q 040062 166 HSSL------VKGVAWDPIGSFIASQSDD-------------------------------------KTVIIWRTSDWS 200 (689)
Q Consensus 166 h~~~------V~~l~~spdg~~las~s~D-------------------------------------g~I~iwd~~~~~ 200 (689)
.... -.+.....++++++.|+.+ ..+.+||..+.+
T Consensus 205 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 282 (323)
T TIGR03548 205 TTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGK 282 (323)
T ss_pred CCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCe
No 500
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=69.09 E-value=2.5e+02 Score=33.34 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=47.6
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec----cCcc--ccc--CC-----cccEEEEEEcCCCCeEEEe
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT----DGHW--AKS--LG-----STFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~----~~~~--~~~--~~-----~~~i~~l~~spdg~~l~~~ 233 (689)
...|.+++...-+.+++....||+|.++|-.+++.+... .... ... .+ ......++|||.+..++..
T Consensus 259 ~~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~ 338 (753)
T PF11635_consen 259 NKRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQI 338 (753)
T ss_pred CCeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEE
Confidence 356777777777889999999999999999988766555 1110 000 00 0123357799998888876
Q ss_pred cCCCC
Q 040062 234 HGFQK 238 (689)
Q Consensus 234 ~~~~~ 238 (689)
..++.
T Consensus 339 ~~~~~ 343 (753)
T PF11635_consen 339 DEDGK 343 (753)
T ss_pred ecCCC
Confidence 55443
Done!