Query 040062
Match_columns 689
No_of_seqs 840 out of 2983
Neff 9.1
Searched_HMMs 29240
Date Mon Mar 25 07:06:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 3.6E-42 1.2E-46 393.6 45.5 382 7-423 54-565 (611)
2 1vyh_C Platelet-activating fac 100.0 2.1E-41 7.1E-46 368.0 41.1 287 7-366 103-409 (410)
3 2ynn_A Coatomer subunit beta'; 100.0 1.7E-41 5.9E-46 353.1 38.7 287 5-416 6-296 (304)
4 1nr0_A Actin interacting prote 100.0 2.6E-41 8.9E-46 386.4 42.4 335 8-422 143-608 (611)
5 3ow8_A WD repeat-containing pr 100.0 2.5E-40 8.7E-45 347.2 41.3 288 8-366 28-319 (321)
6 1got_B GT-beta; complex (GTP-b 100.0 2.1E-39 7.2E-44 342.9 43.8 289 7-365 50-340 (340)
7 4gqb_B Methylosome protein 50; 100.0 2.5E-40 8.5E-45 350.6 34.2 301 10-425 28-331 (344)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 3.8E-39 1.3E-43 341.7 41.9 298 6-372 9-339 (345)
9 2ymu_A WD-40 repeat protein; u 100.0 3.5E-39 1.2E-43 365.3 42.8 316 8-416 258-573 (577)
10 2pbi_B Guanine nucleotide-bind 100.0 1.7E-38 5.9E-43 338.0 42.2 292 7-365 59-354 (354)
11 1vyh_C Platelet-activating fac 100.0 1.6E-39 5.3E-44 353.2 34.5 308 58-421 100-407 (410)
12 4g56_B MGC81050 protein; prote 100.0 7.1E-39 2.4E-43 341.3 37.6 296 10-369 40-344 (357)
13 3ow8_A WD repeat-containing pr 100.0 8.6E-39 2.9E-43 335.5 37.0 293 56-422 22-318 (321)
14 3frx_A Guanine nucleotide-bind 100.0 5.8E-38 2E-42 328.8 43.1 295 5-369 10-318 (319)
15 4ery_A WD repeat-containing pr 100.0 1.9E-37 6.5E-42 323.1 43.4 290 7-367 18-311 (312)
16 1got_B GT-beta; complex (GTP-b 100.0 5.4E-38 1.8E-42 332.1 39.2 287 56-416 45-336 (340)
17 2pm9_A Protein WEB1, protein t 100.0 2.6E-39 8.9E-44 350.2 28.2 351 14-423 13-412 (416)
18 1r5m_A SIR4-interacting protei 100.0 5.7E-38 2E-42 339.6 38.7 336 9-422 42-422 (425)
19 2ymu_A WD-40 repeat protein; u 100.0 1.5E-37 5.1E-42 352.0 43.6 320 8-422 217-536 (577)
20 2hes_X YDR267CP; beta-propelle 100.0 1.9E-37 6.5E-42 326.5 40.9 296 7-368 9-328 (330)
21 3iz6_a 40S ribosomal protein R 100.0 9.8E-39 3.4E-43 343.2 31.6 298 7-369 61-376 (380)
22 1erj_A Transcriptional repress 100.0 2.7E-37 9.4E-42 333.5 43.1 292 9-369 61-390 (393)
23 2xzm_R RACK1; ribosome, transl 100.0 3.4E-37 1.1E-41 326.3 41.3 296 7-370 16-342 (343)
24 3frx_A Guanine nucleotide-bind 100.0 5.1E-37 1.7E-41 321.7 37.5 304 55-424 6-316 (319)
25 2pbi_B Guanine nucleotide-bind 100.0 5.9E-37 2E-41 326.1 37.6 288 56-416 54-350 (354)
26 3vl1_A 26S proteasome regulato 100.0 6.8E-38 2.3E-42 340.0 28.2 331 15-416 58-412 (420)
27 3fm0_A Protein CIAO1; WDR39,SG 100.0 1.3E-36 4.6E-41 322.1 37.5 305 56-424 5-334 (345)
28 1gxr_A ESG1, transducin-like e 100.0 9.8E-37 3.4E-41 319.4 35.3 322 14-421 10-333 (337)
29 3iz6_a 40S ribosomal protein R 100.0 4.8E-38 1.7E-42 337.8 25.4 303 56-424 56-374 (380)
30 4g56_B MGC81050 protein; prote 100.0 3.6E-37 1.2E-41 328.2 29.7 321 17-426 9-344 (357)
31 3zwl_B Eukaryotic translation 100.0 2.1E-35 7E-40 313.2 42.9 297 7-378 27-356 (369)
32 2oaj_A Protein SNI1; WD40 repe 100.0 3.6E-36 1.2E-40 357.4 41.1 376 7-422 12-602 (902)
33 1gxr_A ESG1, transducin-like e 100.0 2.5E-35 8.5E-40 308.7 42.1 288 8-367 47-336 (337)
34 4aow_A Guanine nucleotide-bind 100.0 2.5E-35 8.4E-40 309.6 41.9 295 7-370 33-339 (340)
35 2hes_X YDR267CP; beta-propelle 100.0 9.6E-36 3.3E-40 313.5 37.9 296 56-422 4-325 (330)
36 2xzm_R RACK1; ribosome, transl 100.0 9.3E-36 3.2E-40 315.2 38.0 308 56-422 11-337 (343)
37 4gqb_B Methylosome protein 50; 100.0 1E-35 3.5E-40 315.1 36.8 251 10-372 80-335 (344)
38 4ery_A WD repeat-containing pr 100.0 3.9E-35 1.3E-39 305.6 39.0 290 56-421 13-308 (312)
39 3sfz_A APAF-1, apoptotic pepti 100.0 8.7E-36 3E-40 368.1 39.6 334 9-423 612-1032(1249)
40 1k8k_C P40, ARP2/3 complex 41 100.0 2.1E-35 7.3E-40 314.2 36.7 289 11-370 7-363 (372)
41 1pgu_A Actin interacting prote 100.0 3.7E-35 1.3E-39 334.1 40.6 361 8-423 156-612 (615)
42 1sq9_A Antiviral protein SKI8; 100.0 1.2E-35 4.1E-40 319.5 33.5 305 8-370 12-397 (397)
43 3v7d_B Cell division control p 100.0 1.1E-34 3.9E-39 319.4 41.4 316 7-416 116-456 (464)
44 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.4E-34 4.8E-39 317.3 41.7 316 7-415 113-430 (445)
45 2ynn_A Coatomer subunit beta'; 100.0 1.6E-35 5.5E-40 307.9 32.4 252 57-423 4-257 (304)
46 3mkq_A Coatomer beta'-subunit; 100.0 5.4E-35 1.9E-39 344.8 41.2 342 6-422 7-383 (814)
47 4h5i_A Guanine nucleotide-exch 100.0 4.6E-36 1.6E-40 320.6 29.0 304 11-369 12-344 (365)
48 1erj_A Transcriptional repress 100.0 1E-34 3.6E-39 313.3 38.3 298 64-423 62-387 (393)
49 3dm0_A Maltose-binding peripla 100.0 2.4E-34 8.1E-39 333.8 43.7 292 7-367 377-692 (694)
50 3sfz_A APAF-1, apoptotic pepti 100.0 4.6E-35 1.6E-39 361.7 39.7 363 8-423 653-1156(1249)
51 4aow_A Guanine nucleotide-bind 100.0 2.6E-34 8.8E-39 301.9 38.6 304 56-423 28-335 (340)
52 3ei3_B DNA damage-binding prot 100.0 1.1E-34 3.8E-39 311.1 36.1 294 7-368 68-382 (383)
53 2pm7_B Protein transport prote 100.0 1.5E-34 5E-39 299.7 35.6 256 9-367 6-284 (297)
54 3k26_A Polycomb protein EED; W 100.0 4.8E-35 1.7E-39 310.2 32.7 291 10-367 16-365 (366)
55 3i2n_A WD repeat-containing pr 100.0 1.1E-34 3.8E-39 306.6 32.9 289 9-370 15-355 (357)
56 3odt_A Protein DOA1; ubiquitin 100.0 1.1E-33 3.6E-38 293.3 39.5 289 7-374 13-302 (313)
57 4e54_B DNA damage-binding prot 100.0 2.5E-35 8.7E-40 322.5 28.5 306 8-371 115-433 (435)
58 3dwl_C Actin-related protein 2 100.0 1.2E-35 4E-40 317.8 24.1 283 14-366 12-377 (377)
59 2oaj_A Protein SNI1; WD40 repe 100.0 7.5E-35 2.6E-39 346.1 33.0 378 10-423 56-659 (902)
60 1r5m_A SIR4-interacting protei 100.0 3.4E-34 1.2E-38 309.9 35.1 279 14-367 109-424 (425)
61 1pgu_A Actin interacting prote 100.0 7.5E-34 2.6E-38 323.3 38.2 328 10-422 16-363 (615)
62 3zwl_B Eukaryotic translation 100.0 1.5E-33 5.1E-38 298.9 37.5 297 56-424 22-345 (369)
63 3gre_A Serine/threonine-protei 100.0 1E-34 3.4E-39 317.3 27.4 309 10-416 61-433 (437)
64 2j04_B YDR362CP, TAU91; beta p 100.0 2.4E-35 8.1E-40 328.8 21.7 335 12-422 132-514 (524)
65 3bg1_A Protein SEC13 homolog; 100.0 1.7E-34 5.6E-39 302.1 26.5 260 5-367 6-292 (316)
66 3dm0_A Maltose-binding peripla 100.0 1.4E-33 4.6E-38 327.5 35.6 309 57-422 373-690 (694)
67 2pm9_A Protein WEB1, protein t 100.0 1.2E-34 4.2E-39 313.5 24.5 303 9-369 64-415 (416)
68 3dw8_B Serine/threonine-protei 100.0 3.5E-33 1.2E-37 305.2 33.7 316 10-366 26-444 (447)
69 4aez_A CDC20, WD repeat-contai 100.0 4.6E-33 1.6E-37 301.0 34.2 285 16-373 96-385 (401)
70 3jrp_A Fusion protein of prote 100.0 9.4E-33 3.2E-37 294.1 35.9 261 6-369 5-288 (379)
71 4a11_B DNA excision repair pro 100.0 3E-32 1E-36 293.2 38.8 309 9-373 40-370 (408)
72 1yfq_A Cell cycle arrest prote 100.0 1.2E-33 4.2E-38 297.2 27.2 276 10-415 9-315 (342)
73 3vl1_A 26S proteasome regulato 100.0 1.2E-32 4.1E-37 298.6 35.0 283 15-368 99-419 (420)
74 2pm7_B Protein transport prote 100.0 8.7E-33 3E-37 286.3 32.1 269 59-423 2-283 (297)
75 1sq9_A Antiviral protein SKI8; 100.0 3.2E-33 1.1E-37 300.6 29.8 314 56-422 6-392 (397)
76 1k8k_C P40, ARP2/3 complex 41 100.0 2.2E-32 7.4E-37 291.0 35.5 300 62-423 4-359 (372)
77 3mkq_A Coatomer beta'-subunit; 100.0 1.2E-32 4.2E-37 324.7 36.7 354 7-421 50-419 (814)
78 4gga_A P55CDC, cell division c 100.0 1.2E-31 4.2E-36 291.8 40.9 286 15-371 107-398 (420)
79 4ggc_A P55CDC, cell division c 100.0 2.4E-31 8.1E-36 276.4 40.8 283 16-368 28-315 (318)
80 3k26_A Polycomb protein EED; W 100.0 9.9E-33 3.4E-37 292.4 27.8 292 60-422 12-363 (366)
81 3i2n_A WD repeat-containing pr 100.0 2.1E-32 7.3E-37 289.0 29.5 306 59-422 11-350 (357)
82 3ei3_B DNA damage-binding prot 100.0 2.4E-32 8.3E-37 292.9 30.3 291 55-422 62-379 (383)
83 3odt_A Protein DOA1; ubiquitin 100.0 1.3E-31 4.6E-36 277.4 34.8 283 56-424 8-295 (313)
84 3mmy_A MRNA export factor; mRN 100.0 5E-32 1.7E-36 287.0 31.9 285 8-416 35-339 (368)
85 3f3f_A Nucleoporin SEH1; struc 100.0 5.8E-32 2E-36 283.3 32.0 312 5-372 4-341 (351)
86 2aq5_A Coronin-1A; WD40 repeat 100.0 1.6E-31 5.4E-36 288.9 32.7 293 15-423 36-340 (402)
87 3bg1_A Protein SEC13 homolog; 100.0 1.7E-32 5.7E-37 286.9 23.9 271 61-423 8-291 (316)
88 1p22_A F-BOX/WD-repeat protein 100.0 3.2E-31 1.1E-35 289.8 34.6 272 14-371 134-417 (435)
89 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.5E-30 8.5E-35 283.4 40.7 277 8-368 155-442 (445)
90 3dwl_C Actin-related protein 2 100.0 9E-33 3.1E-37 295.3 20.2 296 63-421 8-375 (377)
91 4e54_B DNA damage-binding prot 100.0 1.4E-31 4.9E-36 292.7 29.1 292 57-422 110-427 (435)
92 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-32 5.9E-37 299.2 20.1 320 1-412 1-350 (588)
93 4aez_A CDC20, WD repeat-contai 100.0 9.7E-31 3.3E-35 282.8 32.5 284 63-424 88-379 (401)
94 3jrp_A Fusion protein of prote 100.0 6.9E-31 2.3E-35 279.6 30.5 273 57-424 2-286 (379)
95 4h5i_A Guanine nucleotide-exch 100.0 9.5E-32 3.3E-36 287.1 22.2 293 66-426 14-344 (365)
96 3dw8_B Serine/threonine-protei 100.0 2.7E-31 9.1E-36 290.3 26.2 307 64-416 26-440 (447)
97 3v7d_B Cell division control p 100.0 9.3E-30 3.2E-34 280.1 38.6 296 8-366 158-461 (464)
98 3jro_A Fusion protein of prote 100.0 3.4E-31 1.2E-35 309.8 28.2 259 7-368 4-285 (753)
99 3f3f_A Nucleoporin SEH1; struc 100.0 3.2E-30 1.1E-34 270.0 32.3 281 60-424 5-336 (351)
100 2j04_B YDR362CP, TAU91; beta p 100.0 3.4E-31 1.1E-35 295.2 25.7 291 10-368 204-517 (524)
101 4gga_A P55CDC, cell division c 100.0 7.5E-30 2.6E-34 277.6 35.1 276 68-423 107-393 (420)
102 3gre_A Serine/threonine-protei 100.0 3.3E-31 1.1E-35 289.3 24.4 276 10-365 109-437 (437)
103 4a11_B DNA excision repair pro 100.0 9.3E-31 3.2E-35 281.5 26.8 312 34-424 22-364 (408)
104 2vdu_B TRNA (guanine-N(7)-)-me 100.0 2.3E-30 7.9E-35 284.3 29.6 284 15-412 6-374 (450)
105 2aq5_A Coronin-1A; WD40 repeat 100.0 9E-30 3.1E-34 275.1 31.0 258 7-371 76-345 (402)
106 2xyi_A Probable histone-bindin 100.0 1.2E-29 4E-34 277.1 31.8 272 6-372 122-414 (430)
107 1p22_A F-BOX/WD-repeat protein 100.0 6E-29 2.1E-33 271.7 34.6 284 60-424 127-413 (435)
108 4ggc_A P55CDC, cell division c 100.0 2.2E-28 7.4E-33 254.0 35.3 277 69-423 28-313 (318)
109 4gq1_A NUP37; propeller, trans 100.0 6.8E-30 2.3E-34 275.6 23.6 318 15-419 17-386 (393)
110 4gq1_A NUP37; propeller, trans 100.0 6.4E-30 2.2E-34 275.8 23.1 256 22-367 98-388 (393)
111 2xyi_A Probable histone-bindin 100.0 5.3E-29 1.8E-33 271.9 28.2 318 14-424 46-409 (430)
112 3vu4_A KMHSV2; beta-propeller 100.0 3.4E-28 1.2E-32 258.5 32.5 293 56-420 9-333 (355)
113 3bws_A Protein LP49; two-domai 100.0 7.9E-28 2.7E-32 261.9 35.7 279 14-367 123-431 (433)
114 3jro_A Fusion protein of prote 100.0 1.5E-28 5.3E-33 287.3 28.8 271 59-424 2-284 (753)
115 1l0q_A Surface layer protein; 100.0 8.7E-27 3E-31 250.0 39.2 273 26-375 3-282 (391)
116 3vu4_A KMHSV2; beta-propeller 100.0 1.7E-27 5.8E-32 253.2 33.0 279 9-371 16-339 (355)
117 3bws_A Protein LP49; two-domai 100.0 1.8E-27 6.2E-32 259.0 33.7 326 14-422 61-429 (433)
118 3lrv_A PRE-mRNA-splicing facto 100.0 4.1E-28 1.4E-32 256.4 27.6 275 20-367 43-332 (343)
119 1yfq_A Cell cycle arrest prote 100.0 3.1E-27 1.1E-31 248.1 28.9 254 8-364 52-320 (342)
120 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.6E-27 2.3E-31 256.8 29.4 268 10-368 100-391 (450)
121 3lrv_A PRE-mRNA-splicing facto 100.0 2E-27 6.7E-32 251.1 22.4 262 73-416 43-326 (343)
122 1l0q_A Surface layer protein; 100.0 3.6E-25 1.2E-29 237.4 39.6 305 14-411 32-366 (391)
123 2w18_A PALB2, fancn, partner a 100.0 4E-26 1.4E-30 234.6 29.6 290 15-366 41-355 (356)
124 3mmy_A MRNA export factor; mRN 99.9 7.3E-26 2.5E-30 239.4 30.0 252 56-423 29-302 (368)
125 2j04_A TAU60, YPL007P, hypothe 99.9 1.6E-26 5.5E-31 252.3 25.4 255 9-356 49-349 (588)
126 2hqs_A Protein TOLB; TOLB, PAL 99.9 7.1E-26 2.4E-30 245.9 26.3 303 14-405 63-410 (415)
127 1nir_A Nitrite reductase; hemo 99.9 1.1E-24 3.6E-29 244.5 34.8 324 20-422 144-511 (543)
128 2ecf_A Dipeptidyl peptidase IV 99.9 5.6E-25 1.9E-29 256.8 29.1 318 14-413 37-445 (741)
129 1xfd_A DIP, dipeptidyl aminope 99.9 3.4E-25 1.2E-29 257.7 22.6 324 15-410 18-427 (723)
130 1nir_A Nitrite reductase; hemo 99.9 3.1E-23 1E-27 232.6 33.5 293 15-376 180-522 (543)
131 2w18_A PALB2, fancn, partner a 99.9 8.3E-24 2.8E-28 217.4 23.7 164 14-206 112-322 (356)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-21 4.6E-26 212.2 34.4 250 25-350 143-410 (415)
133 1k32_A Tricorn protease; prote 99.9 2.6E-22 8.7E-27 243.2 30.9 334 8-416 48-495 (1045)
134 3u4y_A Uncharacterized protein 99.9 2.3E-21 8E-26 202.7 33.7 284 20-372 4-308 (331)
135 1ri6_A Putative isomerase YBHE 99.9 1.3E-21 4.6E-26 204.8 31.2 276 27-367 7-307 (343)
136 1pby_B Quinohemoprotein amine 99.9 7.2E-22 2.5E-26 206.3 28.4 275 26-375 2-317 (337)
137 3vgz_A Uncharacterized protein 99.9 6.8E-21 2.3E-25 200.6 34.1 275 14-359 41-335 (353)
138 1k32_A Tricorn protease; prote 99.9 6E-21 2.1E-25 231.2 33.1 312 6-370 289-639 (1045)
139 2z3z_A Dipeptidyl aminopeptida 99.9 1.7E-21 5.8E-26 226.0 27.2 310 15-413 27-421 (706)
140 2ojh_A Uncharacterized protein 99.9 2.4E-21 8.2E-26 197.7 24.0 255 30-359 17-293 (297)
141 2ecf_A Dipeptidyl peptidase IV 99.9 6.1E-21 2.1E-25 222.5 28.2 283 15-369 110-460 (741)
142 2z3z_A Dipeptidyl aminopeptida 99.9 1E-20 3.5E-25 219.4 29.7 297 15-370 83-437 (706)
143 3u4y_A Uncharacterized protein 99.9 2.7E-20 9.2E-25 194.5 28.3 280 73-422 4-301 (331)
144 3vgz_A Uncharacterized protein 99.9 4.8E-20 1.6E-24 194.1 29.5 273 65-415 39-336 (353)
145 1ri6_A Putative isomerase YBHE 99.9 1.1E-19 3.8E-24 190.1 32.2 281 9-350 34-335 (343)
146 2ojh_A Uncharacterized protein 99.9 8.3E-21 2.8E-25 193.6 21.8 256 83-414 17-293 (297)
147 1z68_A Fibroblast activation p 99.9 1.4E-20 4.7E-25 218.9 25.7 317 17-409 19-426 (719)
148 1jmx_B Amine dehydrogenase; ox 99.9 4.8E-20 1.7E-24 193.5 26.9 285 18-374 4-331 (349)
149 2oit_A Nucleoporin 214KDA; NH2 99.9 8.8E-20 3E-24 198.9 29.3 213 14-235 37-260 (434)
150 3hfq_A Uncharacterized protein 99.9 3E-19 1E-23 188.2 30.9 280 27-371 4-322 (347)
151 1xfd_A DIP, dipeptidyl aminope 99.8 2.4E-20 8.1E-25 216.9 22.7 282 15-357 62-429 (723)
152 3o4h_A Acylamino-acid-releasin 99.8 4.9E-20 1.7E-24 208.9 22.3 270 14-367 22-314 (582)
153 3scy_A Hypothetical bacterial 99.8 2.2E-18 7.4E-23 182.7 32.1 290 21-372 9-343 (361)
154 1pby_B Quinohemoprotein amine 99.8 4.2E-19 1.4E-23 185.2 23.3 274 79-422 2-307 (337)
155 3hfq_A Uncharacterized protein 99.8 5.2E-18 1.8E-22 178.7 31.9 261 9-330 36-324 (347)
156 2oit_A Nucleoporin 214KDA; NH2 99.8 4.1E-18 1.4E-22 185.7 29.9 168 14-199 93-279 (434)
157 3o4h_A Acylamino-acid-releasin 99.8 1.5E-19 5.3E-24 204.8 18.7 266 66-416 21-305 (582)
158 4a5s_A Dipeptidyl peptidase 4 99.8 6.9E-19 2.4E-23 205.3 23.6 320 15-411 18-434 (740)
159 3pe7_A Oligogalacturonate lyas 99.8 3.5E-18 1.2E-22 182.6 26.9 307 56-423 20-382 (388)
160 3pe7_A Oligogalacturonate lyas 99.8 3.4E-18 1.2E-22 182.7 25.9 281 19-368 41-382 (388)
161 3scy_A Hypothetical bacterial 99.8 7.5E-17 2.6E-21 170.8 34.2 276 14-346 50-360 (361)
162 1z68_A Fibroblast activation p 99.8 8.8E-19 3E-23 203.6 19.5 299 16-372 62-447 (719)
163 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.3E-17 7.8E-22 175.5 26.2 256 15-370 41-343 (365)
164 1jmx_B Amine dehydrogenase; ox 99.8 2.5E-17 8.4E-22 172.8 23.3 274 71-422 4-322 (349)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 1.1E-16 3.9E-21 170.1 25.7 273 27-416 4-334 (365)
166 3fvz_A Peptidyl-glycine alpha- 99.7 1.4E-15 4.7E-20 159.3 32.4 259 14-369 24-323 (329)
167 3c5m_A Oligogalacturonate lyas 99.7 1.2E-16 4.2E-21 170.7 23.0 279 16-367 38-381 (396)
168 2oiz_A Aromatic amine dehydrog 99.7 5.9E-16 2E-20 164.4 27.8 294 23-405 13-360 (361)
169 3c5m_A Oligogalacturonate lyas 99.7 3.4E-17 1.2E-21 175.0 17.0 291 56-416 20-375 (396)
170 2gop_A Trilobed protease; beta 99.7 2.8E-15 9.5E-20 157.5 30.7 261 15-367 16-330 (347)
171 1q7f_A NHL, brain tumor CG1071 99.7 1.7E-14 5.9E-19 147.2 32.6 238 14-368 30-280 (286)
172 3azo_A Aminopeptidase; POP fam 99.7 5.7E-16 1.9E-20 178.1 23.5 297 8-371 19-372 (662)
173 4a5s_A Dipeptidyl peptidase 4 99.7 2.6E-15 9E-20 175.0 28.5 298 17-372 65-453 (740)
174 2dg1_A DRP35, lactonase; beta 99.7 8.7E-15 3E-19 152.9 28.1 278 15-368 7-314 (333)
175 2z2n_A Virginiamycin B lyase; 99.7 1.2E-12 4.1E-17 133.7 39.5 281 14-370 15-297 (299)
176 2xdw_A Prolyl endopeptidase; a 99.6 2.4E-14 8.2E-19 166.0 28.7 248 64-370 122-416 (710)
177 3azo_A Aminopeptidase; POP fam 99.6 3.8E-15 1.3E-19 171.2 20.8 286 59-416 16-360 (662)
178 1qks_A Cytochrome CD1 nitrite 99.6 5.7E-13 1.9E-17 149.1 36.8 312 23-411 165-521 (567)
179 2gop_A Trilobed protease; beta 99.6 3.3E-14 1.1E-18 149.3 24.7 254 67-416 15-323 (347)
180 1qks_A Cytochrome CD1 nitrite 99.6 9.6E-13 3.3E-17 147.2 37.2 295 14-376 197-546 (567)
181 2dg1_A DRP35, lactonase; beta 99.6 4.5E-14 1.5E-18 147.4 22.4 282 67-414 6-301 (333)
182 2bkl_A Prolyl endopeptidase; m 99.6 3E-14 1E-18 164.8 22.3 281 22-371 76-400 (695)
183 2oiz_A Aromatic amine dehydrog 99.6 1.5E-13 5.1E-18 145.8 25.5 265 18-350 54-360 (361)
184 3fvz_A Peptidyl-glycine alpha- 99.6 1.3E-13 4.4E-18 144.2 24.1 250 65-416 22-315 (329)
185 3e5z_A Putative gluconolactona 99.6 7E-13 2.4E-17 136.1 29.2 241 14-372 28-290 (296)
186 1rwi_B Serine/threonine-protei 99.6 3.5E-13 1.2E-17 135.9 26.4 241 15-371 25-267 (270)
187 1q7f_A NHL, brain tumor CG1071 99.6 6.2E-13 2.1E-17 135.6 27.4 240 64-422 27-277 (286)
188 3sjl_D Methylamine dehydrogena 99.6 4.5E-13 1.5E-17 141.2 26.9 284 19-376 38-371 (386)
189 2z2n_A Virginiamycin B lyase; 99.6 1E-11 3.4E-16 126.8 35.2 276 64-416 12-289 (299)
190 2qc5_A Streptogramin B lactona 99.6 2.8E-11 9.7E-16 123.5 37.8 278 14-366 20-298 (300)
191 1yr2_A Prolyl oligopeptidase; 99.6 2.4E-13 8.2E-18 158.4 24.2 286 22-371 115-444 (741)
192 3no2_A Uncharacterized protein 99.5 1.9E-12 6.6E-17 131.7 27.5 231 24-373 4-257 (276)
193 2mad_H Methylamine dehydrogena 99.5 1.8E-11 6.2E-16 130.0 34.9 290 20-374 27-356 (373)
194 3dsm_A Uncharacterized protein 99.5 6.2E-12 2.1E-16 131.4 29.9 266 34-374 16-307 (328)
195 2xdw_A Prolyl endopeptidase; a 99.5 2.4E-12 8.1E-17 149.3 28.5 249 15-327 126-416 (710)
196 3e5z_A Putative gluconolactona 99.5 7.1E-13 2.4E-17 136.0 21.5 241 119-416 21-280 (296)
197 3dsm_A Uncharacterized protein 99.5 1.3E-11 4.6E-16 128.8 29.1 252 15-345 45-319 (328)
198 2bkl_A Prolyl endopeptidase; m 99.4 2.8E-12 9.7E-17 148.2 21.9 267 75-408 76-378 (695)
199 2qc5_A Streptogramin B lactona 99.4 2.3E-10 8E-15 116.6 33.8 273 64-411 17-290 (300)
200 3c75_H MADH, methylamine dehyd 99.4 3.3E-11 1.1E-15 129.1 25.9 279 23-375 82-409 (426)
201 3no2_A Uncharacterized protein 99.4 9.1E-12 3.1E-16 126.7 20.3 224 77-410 4-230 (276)
202 1xip_A Nucleoporin NUP159; bet 99.4 5.5E-12 1.9E-16 133.4 17.6 191 14-235 38-233 (388)
203 1rwi_B Serine/threonine-protei 99.4 2.6E-11 8.9E-16 122.1 20.8 232 127-416 25-257 (270)
204 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 2.8E-10 9.5E-15 117.2 28.5 240 65-368 16-299 (314)
205 2qe8_A Uncharacterized protein 99.3 4.5E-11 1.5E-15 125.6 20.1 266 14-363 17-316 (343)
206 3hrp_A Uncharacterized protein 99.3 1.6E-09 5.6E-14 116.5 31.8 244 67-367 131-409 (409)
207 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 9.1E-10 3.1E-14 113.2 27.9 237 14-325 18-299 (314)
208 2mad_H Methylamine dehydrogena 99.3 1.2E-09 4.1E-14 116.0 29.3 263 73-416 27-343 (373)
209 1yr2_A Prolyl oligopeptidase; 99.3 1.6E-10 5.6E-15 134.4 24.2 271 75-408 115-422 (741)
210 3iuj_A Prolyl endopeptidase; h 99.3 8.7E-11 3E-15 135.6 21.2 245 64-371 126-408 (693)
211 3g4e_A Regucalcin; six bladed 99.3 3.1E-09 1.1E-13 109.0 30.6 231 64-358 10-262 (297)
212 3sjl_D Methylamine dehydrogena 99.2 1.6E-09 5.6E-14 114.0 24.3 264 18-348 82-384 (386)
213 3hrp_A Uncharacterized protein 99.2 4.9E-09 1.7E-13 112.8 28.5 190 15-233 132-340 (409)
214 3g4e_A Regucalcin; six bladed 99.2 2.8E-09 9.5E-14 109.3 25.1 238 121-412 8-261 (297)
215 3dr2_A Exported gluconolactona 99.2 4.6E-09 1.6E-13 108.1 25.1 236 58-359 36-298 (305)
216 1mda_H Methylamine dehydrogena 99.2 1.1E-09 3.6E-14 115.5 19.8 270 24-376 30-354 (368)
217 3iuj_A Prolyl endopeptidase; h 99.2 2.1E-09 7.1E-14 124.0 23.9 198 14-249 129-358 (693)
218 3c75_H MADH, methylamine dehyd 99.1 1.3E-09 4.5E-14 116.7 19.6 265 76-416 82-395 (426)
219 2ghs_A AGR_C_1268P; regucalcin 99.1 5.2E-08 1.8E-12 101.3 31.5 223 68-358 50-292 (326)
220 1xip_A Nucleoporin NUP159; bet 99.1 1.5E-09 5.1E-14 114.7 18.2 135 9-184 85-230 (388)
221 2ece_A 462AA long hypothetical 99.1 2.1E-08 7.1E-13 106.3 25.4 154 20-198 88-289 (462)
222 3dr2_A Exported gluconolactona 99.1 2.9E-08 9.9E-13 102.1 24.6 218 14-273 45-288 (305)
223 2ghs_A AGR_C_1268P; regucalcin 99.1 4.9E-08 1.7E-12 101.5 26.6 229 127-411 50-290 (326)
224 1yiq_A Quinohemoprotein alcoho 99.0 1.1E-08 3.9E-13 117.4 22.7 152 25-207 70-293 (689)
225 1kb0_A Quinohemoprotein alcoho 99.0 9.8E-09 3.4E-13 117.7 19.4 332 25-408 77-535 (677)
226 2qe8_A Uncharacterized protein 99.0 1.2E-08 4.2E-13 106.9 18.4 278 116-416 10-314 (343)
227 3hxj_A Pyrrolo-quinoline quino 99.0 1.2E-09 4.2E-14 113.1 10.6 306 6-416 11-317 (330)
228 3q7m_A Lipoprotein YFGL, BAMB; 99.0 2.2E-07 7.5E-12 98.3 27.5 272 24-374 52-343 (376)
229 2hz6_A Endoplasmic reticulum t 99.0 2.8E-10 9.7E-15 120.8 4.7 147 24-205 8-156 (369)
230 1kb0_A Quinohemoprotein alcoho 98.9 6.9E-08 2.4E-12 110.6 23.6 306 24-354 127-536 (677)
231 1yiq_A Quinohemoprotein alcoho 98.9 1.6E-07 5.3E-12 107.9 24.1 170 24-204 120-344 (689)
232 1fwx_A Nitrous oxide reductase 98.9 9.9E-08 3.4E-12 104.6 20.7 233 77-371 100-434 (595)
233 3hxj_A Pyrrolo-quinoline quino 98.9 9.2E-08 3.1E-12 98.8 19.4 264 15-368 61-324 (330)
234 1npe_A Nidogen, entactin; glyc 98.8 4.5E-06 1.5E-10 83.6 30.7 258 25-350 1-263 (267)
235 3q7m_A Lipoprotein YFGL, BAMB; 98.8 2E-06 6.8E-11 90.9 29.2 259 24-365 102-375 (376)
236 1mda_H Methylamine dehydrogena 98.8 4.1E-08 1.4E-12 103.4 14.8 91 89-198 47-158 (368)
237 2iwa_A Glutamine cyclotransfer 98.7 2.3E-06 7.8E-11 85.3 24.4 197 10-239 16-229 (266)
238 2hz6_A Endoplasmic reticulum t 98.7 8.1E-10 2.8E-14 117.2 -0.8 185 77-373 8-197 (369)
239 4a2l_A BT_4663, two-component 98.7 2.8E-05 9.7E-10 90.9 36.8 320 16-416 175-520 (795)
240 1fwx_A Nitrous oxide reductase 98.7 3.9E-08 1.3E-12 107.8 11.4 246 136-410 100-405 (595)
241 4a2l_A BT_4663, two-component 98.7 1.3E-05 4.3E-10 93.8 32.9 318 16-415 133-473 (795)
242 1npe_A Nidogen, entactin; glyc 98.7 1.2E-05 4E-10 80.6 27.7 259 79-405 2-263 (267)
243 2iwa_A Glutamine cyclotransfer 98.7 9.4E-06 3.2E-10 80.8 25.8 212 56-370 9-239 (266)
244 3nol_A Glutamine cyclotransfer 98.6 5.7E-06 1.9E-10 81.5 20.7 190 10-235 38-244 (262)
245 2ece_A 462AA long hypothetical 98.6 4.5E-06 1.5E-10 88.5 21.1 191 16-235 140-400 (462)
246 2p4o_A Hypothetical protein; p 98.5 8.8E-05 3E-09 75.8 29.7 246 56-359 22-279 (306)
247 2fp8_A Strictosidine synthase; 98.5 3.5E-05 1.2E-09 79.4 25.8 237 68-368 20-313 (322)
248 1kv9_A Type II quinohemoprotei 98.5 2E-05 6.7E-10 90.1 25.9 165 25-205 117-340 (668)
249 3nok_A Glutaminyl cyclase; bet 98.5 2.6E-05 9E-10 76.8 22.2 186 16-235 57-254 (268)
250 1kv9_A Type II quinohemoprotei 98.4 1.5E-05 5.3E-10 91.0 23.6 60 314-375 436-495 (668)
251 3nol_A Glutamine cyclotransfer 98.4 4.8E-05 1.6E-09 74.9 23.3 193 115-357 31-244 (262)
252 3v9f_A Two-component system se 98.4 0.0004 1.4E-08 80.9 35.6 324 15-416 164-518 (781)
253 2ad6_A Methanol dehydrogenase 98.4 3.6E-05 1.2E-09 86.1 24.3 60 314-375 442-501 (571)
254 3mbr_X Glutamine cyclotransfer 98.4 9.1E-05 3.1E-09 72.3 23.8 192 10-235 16-223 (243)
255 1k3i_A Galactose oxidase precu 98.4 8.9E-06 3.1E-10 92.9 19.3 116 71-201 190-326 (656)
256 3v9f_A Two-component system se 98.4 0.00038 1.3E-08 81.0 33.1 326 14-416 258-605 (781)
257 1w6s_A Methanol dehydrogenase 98.3 3.5E-05 1.2E-09 86.4 22.8 60 314-375 451-510 (599)
258 2z34_C Protein HIR1; histone c 98.3 2.4E-07 8.3E-12 55.1 2.2 25 473-497 3-27 (29)
259 2xe4_A Oligopeptidase B; hydro 98.3 6.1E-05 2.1E-09 87.3 24.5 113 68-199 175-305 (751)
260 3nok_A Glutaminyl cyclase; bet 98.3 0.00013 4.4E-09 71.8 22.4 128 57-207 44-173 (268)
261 2xbg_A YCF48-like protein; pho 98.3 0.0017 5.9E-08 66.9 32.5 274 14-365 36-319 (327)
262 2ad6_A Methanol dehydrogenase 98.3 0.0001 3.4E-09 82.5 24.3 168 25-206 115-343 (571)
263 2fp8_A Strictosidine synthase; 98.3 0.00024 8.2E-09 73.1 25.3 184 15-234 20-247 (322)
264 3v64_C Agrin; beta propeller, 98.3 0.0022 7.4E-08 66.9 32.8 184 15-235 35-222 (349)
265 3mbr_X Glutamine cyclotransfer 98.2 0.00035 1.2E-08 68.1 24.3 193 113-356 7-222 (243)
266 3v65_B Low-density lipoprotein 98.2 0.0017 5.8E-08 68.7 31.9 183 16-235 79-265 (386)
267 3tc9_A Hypothetical hydrolase; 98.2 0.00028 9.6E-09 75.9 25.7 144 68-235 138-289 (430)
268 1ijq_A LDL receptor, low-densi 98.2 0.004 1.4E-07 63.7 33.1 177 27-235 3-183 (316)
269 1w6s_A Methanol dehydrogenase 98.2 0.0002 6.9E-09 80.2 24.0 164 28-206 124-350 (599)
270 1flg_A Protein (quinoprotein e 98.2 0.00045 1.5E-08 77.3 26.8 77 130-207 250-364 (582)
271 3p5b_L Low density lipoprotein 98.2 0.0048 1.6E-07 65.5 33.7 178 26-235 84-265 (400)
272 1flg_A Protein (quinoprotein e 98.2 0.00027 9.2E-09 79.1 24.9 60 314-375 464-523 (582)
273 2p4o_A Hypothetical protein; p 98.2 0.00038 1.3E-08 71.0 24.1 251 111-412 18-277 (306)
274 4hw6_A Hypothetical protein, I 98.1 0.00069 2.4E-08 72.9 26.1 144 68-235 140-292 (433)
275 3qqz_A Putative uncharacterize 98.1 0.0015 5E-08 64.5 26.1 210 119-365 20-250 (255)
276 1k3i_A Galactose oxidase precu 98.1 8.2E-05 2.8E-09 84.9 19.6 119 18-161 190-328 (656)
277 3v64_C Agrin; beta propeller, 98.1 0.0034 1.2E-07 65.3 30.0 240 70-371 37-278 (349)
278 3v65_B Low-density lipoprotein 98.0 0.0024 8.1E-08 67.5 27.1 240 71-372 81-322 (386)
279 1ijq_A LDL receptor, low-densi 98.0 0.008 2.7E-07 61.5 30.3 232 80-371 3-241 (316)
280 3sov_A LRP-6, low-density lipo 98.0 0.0061 2.1E-07 62.5 28.9 176 27-235 6-185 (318)
281 2xe4_A Oligopeptidase B; hydro 97.9 0.0003 1E-08 81.5 20.4 113 127-248 175-302 (751)
282 3tc9_A Hypothetical hydrolase; 97.9 0.0028 9.6E-08 68.0 26.1 154 15-197 138-300 (430)
283 4hw6_A Hypothetical protein, I 97.8 0.0048 1.7E-07 66.2 26.4 154 15-197 140-303 (433)
284 2i32_E Histone regulatory homo 97.8 8E-06 2.7E-10 56.8 2.4 26 470-495 27-52 (57)
285 3p5b_L Low density lipoprotein 97.8 0.016 5.4E-07 61.5 29.4 233 80-372 85-324 (400)
286 3qqz_A Putative uncharacterize 97.8 0.0055 1.9E-07 60.4 23.7 193 14-233 27-241 (255)
287 3m0c_C LDL receptor, low-densi 97.8 0.023 8E-07 65.5 32.4 186 17-235 388-577 (791)
288 3a9g_A Putative uncharacterize 97.7 0.036 1.2E-06 57.6 30.2 103 66-186 28-153 (354)
289 2ism_A Putative oxidoreductase 97.7 0.023 7.9E-07 59.0 28.4 102 67-186 31-153 (352)
290 3kya_A Putative phosphatase; s 97.7 0.01 3.5E-07 64.2 25.0 145 68-235 140-329 (496)
291 3s94_A LRP-6, low-density lipo 97.6 0.14 4.9E-06 57.3 36.4 160 14-200 40-204 (619)
292 2xbg_A YCF48-like protein; pho 97.6 0.034 1.2E-06 57.1 26.8 187 14-234 80-268 (327)
293 3ei3_A DNA damage-binding prot 97.5 0.13 4.4E-06 61.9 34.9 190 14-234 554-755 (1158)
294 2p9w_A MAL S 1 allergenic prot 97.5 0.0044 1.5E-07 63.0 18.8 157 17-198 16-215 (334)
295 2g8s_A Glucose/sorbosone dehyd 97.5 0.058 2E-06 56.0 27.8 60 305-366 288-350 (353)
296 3sov_A LRP-6, low-density lipo 97.5 0.033 1.1E-06 57.0 24.9 204 127-372 36-242 (318)
297 3s94_A LRP-6, low-density lipo 97.5 0.11 3.6E-06 58.4 31.1 160 15-204 85-249 (619)
298 1cru_A Protein (soluble quinop 97.5 0.11 3.7E-06 55.9 30.0 107 66-187 26-163 (454)
299 3m0c_C LDL receptor, low-densi 97.4 0.062 2.1E-06 61.9 28.8 206 124-371 422-635 (791)
300 3amr_A 3-phytase; beta-propell 97.4 0.033 1.1E-06 57.1 23.4 148 18-196 30-208 (355)
301 3das_A Putative oxidoreductase 97.4 0.16 5.4E-06 52.3 30.4 113 59-186 24-158 (347)
302 3amr_A 3-phytase; beta-propell 97.4 0.019 6.6E-07 58.8 21.2 188 77-367 39-262 (355)
303 2ism_A Putative oxidoreductase 97.3 0.066 2.3E-06 55.5 25.9 106 125-233 30-152 (352)
304 2xzh_A Clathrin heavy chain 1; 97.3 0.15 5.1E-06 51.4 26.3 205 132-373 73-295 (365)
305 3kya_A Putative phosphatase; s 97.3 0.064 2.2E-06 58.0 25.8 159 15-197 140-340 (496)
306 4a0p_A LRP6, LRP-6, low-densit 97.1 0.51 1.7E-05 52.9 35.3 159 15-205 81-244 (628)
307 3a9g_A Putative uncharacterize 97.1 0.11 3.7E-06 53.9 24.2 106 125-233 28-152 (354)
308 2xzh_A Clathrin heavy chain 1; 97.0 0.33 1.1E-05 48.9 30.7 248 18-372 71-336 (365)
309 2p9w_A MAL S 1 allergenic prot 97.0 0.055 1.9E-06 55.0 20.2 111 124-234 11-155 (334)
310 1n7d_A LDL receptor, low-densi 97.0 0.0011 3.9E-08 75.7 8.6 150 67-235 406-559 (699)
311 1n7d_A LDL receptor, low-densi 96.9 0.0031 1.1E-07 72.1 11.4 208 126-374 406-620 (699)
312 3sre_A PON1, serum paraoxonase 96.8 0.18 6.2E-06 52.1 22.4 189 16-234 52-285 (355)
313 2vpj_A Kelch-like protein 12; 96.8 0.092 3.2E-06 52.7 19.9 152 24-201 14-187 (301)
314 1bpo_A Protein (clathrin); cla 96.7 0.73 2.5E-05 48.3 26.3 206 131-373 71-294 (494)
315 3sre_A PON1, serum paraoxonase 96.7 0.16 5.5E-06 52.5 21.4 146 69-235 52-240 (355)
316 1bpo_A Protein (clathrin); cla 96.7 0.75 2.6E-05 48.2 29.7 248 18-372 70-335 (494)
317 4a0p_A LRP6, LRP-6, low-densit 96.7 1.2 4E-05 50.0 33.5 176 26-236 7-186 (628)
318 3das_A Putative oxidoreductase 96.7 0.7 2.4E-05 47.4 27.2 117 117-234 23-158 (347)
319 2vpj_A Kelch-like protein 12; 96.5 0.11 3.7E-06 52.1 18.0 64 136-201 62-140 (301)
320 2g8s_A Glucose/sorbosone dehyd 96.4 0.2 6.9E-06 51.8 20.1 107 126-233 18-147 (353)
321 3ii7_A Kelch-like protein 7; p 96.4 0.27 9.2E-06 49.4 20.6 148 25-201 12-181 (306)
322 2xn4_A Kelch-like protein 2; s 96.4 0.17 5.7E-06 50.8 18.9 64 136-201 61-136 (302)
323 3ii7_A Kelch-like protein 7; p 96.3 0.18 6.1E-06 50.7 18.7 104 79-201 13-130 (306)
324 2xn4_A Kelch-like protein 2; s 96.3 0.21 7.3E-06 50.0 18.9 148 24-201 15-185 (302)
325 3pbp_A Nucleoporin NUP82; beta 96.2 0.56 1.9E-05 49.1 21.1 164 134-364 29-208 (452)
326 3pbp_A Nucleoporin NUP82; beta 96.0 0.55 1.9E-05 49.2 20.1 154 21-193 28-207 (452)
327 4asc_A Kelch repeat and BTB do 96.0 0.55 1.9E-05 47.3 20.4 101 80-200 7-128 (315)
328 1cru_A Protein (soluble quinop 95.6 0.44 1.5E-05 51.1 18.5 111 15-144 28-162 (454)
329 3ei3_A DNA damage-binding prot 95.5 6.1 0.00021 47.4 33.7 111 68-197 515-635 (1158)
330 3sbq_A Nitrous-oxide reductase 95.4 0.94 3.2E-05 48.9 19.4 273 80-369 72-409 (638)
331 2uvk_A YJHT; unknown function, 95.3 1.1 3.7E-05 45.9 19.8 30 305-334 316-351 (357)
332 1zgk_A Kelch-like ECH-associat 95.2 0.45 1.6E-05 47.8 16.4 106 77-201 24-149 (308)
333 1zgk_A Kelch-like ECH-associat 95.2 0.62 2.1E-05 46.8 17.3 153 19-201 19-196 (308)
334 3ott_A Two-component system se 95.1 6 0.00021 45.1 37.5 276 67-415 146-441 (758)
335 3s25_A Hypothetical 7-bladed b 95.1 3.1 0.00011 41.7 22.5 161 22-235 22-203 (302)
336 2wg3_C Hedgehog-interacting pr 95.0 4.6 0.00016 43.1 25.6 115 68-189 15-160 (463)
337 2woz_A Kelch repeat and BTB do 94.9 1.5 5E-05 44.1 19.2 67 133-201 53-139 (318)
338 1tl2_A L10, protein (tachylect 94.7 0.37 1.3E-05 45.7 12.4 156 15-196 42-206 (236)
339 4asc_A Kelch repeat and BTB do 94.6 1.6 5.6E-05 43.7 18.4 144 27-200 7-176 (315)
340 1tl2_A L10, protein (tachylect 94.5 0.56 1.9E-05 44.5 13.1 103 126-233 41-152 (236)
341 2woz_A Kelch repeat and BTB do 94.3 2.2 7.4E-05 42.8 18.6 64 136-200 109-186 (318)
342 2uvk_A YJHT; unknown function, 94.2 0.63 2.2E-05 47.7 14.6 57 317-374 286-348 (357)
343 3ott_A Two-component system se 93.6 12 0.00042 42.5 35.5 315 14-416 146-496 (758)
344 1xi4_A Clathrin heavy chain; a 93.6 3.1 0.0001 50.2 19.8 249 20-372 72-335 (1630)
345 3s25_A Hypothetical 7-bladed b 93.3 7.2 0.00025 38.9 24.1 126 73-233 110-240 (302)
346 2be1_A Serine/threonine-protei 93.3 2 6.7E-05 43.9 15.8 112 26-165 11-139 (339)
347 2wg3_C Hedgehog-interacting pr 91.9 15 0.00051 39.1 24.7 109 126-235 14-158 (463)
348 1xi4_A Clathrin heavy chain; a 91.5 5.7 0.0002 48.0 18.5 205 132-373 72-294 (1630)
349 2zwa_A Leucine carboxyl methyl 89.0 3.2 0.00011 47.0 13.5 153 24-201 451-638 (695)
350 3q6k_A 43.2 kDa salivary prote 87.5 28 0.00097 35.8 21.9 86 148-233 124-241 (381)
351 3qhy_B Beta-lactamase inhibito 85.8 22 0.00075 34.9 16.0 144 15-198 25-168 (282)
352 3b7f_A Glycosyl hydrolase, BNR 83.1 44 0.0015 34.2 25.5 68 126-195 177-259 (394)
353 2zwa_A Leucine carboxyl methyl 82.5 23 0.0008 39.8 16.4 65 135-199 396-478 (695)
354 4gq2_M Nucleoporin NUP120; bet 81.3 86 0.003 36.6 21.0 38 169-206 237-274 (950)
355 3sbq_A Nitrous-oxide reductase 81.0 10 0.00036 41.0 11.6 122 14-144 323-453 (638)
356 2be1_A Serine/threonine-protei 73.1 21 0.00073 36.1 11.0 113 79-208 11-140 (339)
357 1suu_A DNA gyrase subunit A; t 70.7 87 0.003 31.0 19.1 171 14-199 47-232 (312)
358 4gq2_M Nucleoporin NUP120; bet 68.7 1.8E+02 0.0062 33.9 20.1 39 126-164 236-274 (950)
359 4hvt_A Ritya.17583.B, post-pro 67.8 1.6E+02 0.0055 33.0 18.2 56 314-370 318-383 (711)
360 3uc1_A DNA gyrase subunit A; D 66.1 1.1E+02 0.0038 30.5 19.1 170 14-197 95-278 (327)
361 4fhn_B Nucleoporin NUP120; pro 64.5 79 0.0027 37.8 15.3 39 169-207 239-277 (1139)
362 3b7f_A Glycosyl hydrolase, BNR 61.6 1.4E+02 0.0049 30.2 29.7 65 127-192 116-202 (394)
363 1suu_A DNA gyrase subunit A; t 61.6 1.3E+02 0.0044 29.8 19.8 129 14-156 100-231 (312)
364 3q6k_A 43.2 kDa salivary prote 58.0 1.7E+02 0.0058 29.9 25.7 204 14-235 87-343 (381)
365 1zi0_A DNA gyrase subunit A; b 56.7 1.6E+02 0.0053 29.1 19.0 171 14-198 95-277 (307)
366 3l6v_A GYRA, DNA gyrase subuni 56.1 1.8E+02 0.0061 29.6 20.2 128 14-155 46-179 (370)
367 3no0_A DNA gyrase subunit A; D 54.2 1.6E+02 0.0055 28.5 19.7 169 13-197 67-245 (276)
368 3qhy_B Beta-lactamase inhibito 54.2 1.2E+02 0.004 29.5 12.2 66 127-198 181-246 (282)
369 3zwu_A Alkaline phosphatase PH 47.7 50 0.0017 36.2 8.8 58 128-185 478-548 (592)
370 1sqj_A OXG-RCBH, oligoxylogluc 45.9 3.5E+02 0.012 30.6 16.1 149 14-188 15-190 (789)
371 4fhn_B Nucleoporin NUP120; pro 42.9 33 0.0011 41.1 7.1 38 127-164 239-276 (1139)
372 4a9v_A PHOX; hydrolase, beta-p 42.4 94 0.0032 33.8 9.7 61 126-186 476-549 (592)
373 1wp5_A Topoisomerase IV; broke 41.1 2.8E+02 0.0095 27.5 19.6 172 14-198 92-277 (323)
374 1wp5_A Topoisomerase IV; broke 40.4 2.8E+02 0.0097 27.4 19.3 171 14-198 39-225 (323)
375 3f7f_A Nucleoporin NUP120; nuc 37.0 70 0.0024 35.8 7.8 37 169-207 223-259 (729)
376 3no0_A DNA gyrase subunit A; D 37.0 2.9E+02 0.01 26.6 19.4 167 12-200 22-198 (276)
377 3l6v_A GYRA, DNA gyrase subuni 35.4 3.7E+02 0.013 27.2 21.0 79 14-97 99-180 (370)
378 3zwu_A Alkaline phosphatase PH 33.6 97 0.0033 33.9 8.3 39 317-355 510-548 (592)
379 3uc1_A DNA gyrase subunit A; D 32.7 3.8E+02 0.013 26.6 24.9 171 14-199 42-229 (327)
380 3f7f_A Nucleoporin NUP120; nuc 28.0 85 0.0029 35.1 6.6 37 127-165 223-259 (729)
381 4a9v_A PHOX; hydrolase, beta-p 27.0 1.5E+02 0.0053 32.1 8.2 40 317-356 510-549 (592)
382 1xak_A SARS ORF7A accessory pr 26.6 1.6E+02 0.0054 21.4 5.5 22 666-687 42-63 (83)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=3.6e-42 Score=393.59 Aligned_cols=382 Identities=22% Similarity=0.248 Sum_probs=287.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCC----------------CCCc-----------------
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNF----------------ENDE----------------- 53 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~----------------~~~~----------------- 53 (689)
.+.+|. ..|++++|+|||++||+|+.|+.|+|||+....... ..+.
T Consensus 54 ~~~~h~-~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 54 IYTEHS-HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred EecCCC-CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEE
Confidence 355788 599999999999999999999999999986321100 0000
Q ss_pred --ccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE
Q 040062 54 --STQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD 130 (689)
Q Consensus 54 --~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 130 (689)
..+..+..+.+|.+.|++++|+|++. +|++|+.|++|++||..+. +....+.+|...|.+
T Consensus 133 ~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~-----------------~~~~~l~~H~~~V~~ 195 (611)
T 1nr0_A 133 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPF-----------------KFKSTFGEHTKFVHS 195 (611)
T ss_dssp ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTB-----------------EEEEEECCCSSCEEE
T ss_pred EeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCC-----------------eEeeeeccccCceEE
Confidence 01122344567777777777777765 4777788888888876654 677889999999999
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe-------cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCccee
Q 040062 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR-------GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAH 203 (689)
Q Consensus 131 l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~-------~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~ 203 (689)
++|+||+++|++++.|++|++||+.+++.+..+. +|...|.+++|+|++++|++++.|++|++||+++++.+.
T Consensus 196 v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~ 275 (611)
T 1nr0_A 196 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK 275 (611)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred EEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceee
Confidence 9999999999999999999999999999988884 799999999999999999999999999999999887765
Q ss_pred eccCccc-------------------------------------ccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 204 RTDGHWA-------------------------------------KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 204 ~~~~~~~-------------------------------------~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
.+..... .......+.+++|+|+|++|++++.+ ..+.+|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D----~~v~~W 351 (611)
T 1nr0_A 276 TIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAE----GHINSW 351 (611)
T ss_dssp EEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT----SCEEEE
T ss_pred eecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCC----CcEEEE
Confidence 5432100 00123458999999999999998774 467799
Q ss_pred ecCCceeeeee-cCCCCCEEEEEEcCCccccccccccccccc--------------------------------------
Q 040062 247 ERGEWAATFDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAA-------------------------------------- 287 (689)
Q Consensus 247 ~~~~~~~~~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~-------------------------------------- 287 (689)
+.........+ .+|...+.+++|++++..............
T Consensus 352 d~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~ 431 (611)
T 1nr0_A 352 DISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACY 431 (611)
T ss_dssp ETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEES
T ss_pred ECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeC
Confidence 88766554444 578999999999876532211100000000
Q ss_pred --cccccC--------CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC
Q 040062 288 --PVGWTN--------GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 288 --~~~~~~--------~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 357 (689)
...|.. ........+++++++|++|+.|+.|++||+..+.........|...|++++|+|||++|++++.
T Consensus 432 ~~v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~ 511 (611)
T 1nr0_A 432 KHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ 511 (611)
T ss_dssp SEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred ceEEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC
Confidence 000000 0111233467899999999999999999998765432222468899999999999999999999
Q ss_pred CCcEEEEEeec-cccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 358 DGTVANFHFEV-KELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 358 DG~I~vwd~~~-~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
|++|++|++.+ +++... ..++.|...|.+++|||||++|++++.|++| +++..
T Consensus 512 d~~v~~w~~~~~~~~~~~-----------~~~~~H~~~V~~v~fspdg~~lasgs~D~~v--~lW~~ 565 (611)
T 1nr0_A 512 SRKVIPYSVANNFELAHT-----------NSWTFHTAKVACVSWSPDNVRLATGSLDNSV--IVWNM 565 (611)
T ss_dssp TSCEEEEEGGGTTEESCC-----------CCCCCCSSCEEEEEECTTSSEEEEEETTSCE--EEEET
T ss_pred CCCEEEEEcCCCCceeee-----------eeeeecccceeEEEECCCCCEEEEEECCCcE--EEEEC
Confidence 99999999987 544321 1345588899999999999999999999999 88764
No 2
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.1e-41 Score=367.97 Aligned_cols=287 Identities=22% Similarity=0.365 Sum_probs=263.9
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. .+|++++|+|++.+|++|+.||.|+|||+.+ ++....+.+|.+.|++++|+|++++|++|+.
T Consensus 103 ~l~gh~-~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~-----------~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~ 170 (410)
T 1vyh_C 103 ALSGHR-SPVTRVIFHPVFSVMVSASEDATIKVWDYET-----------GDFERTLKGHTDSVQDISFDHSGKLLASCSA 170 (410)
T ss_dssp EEECCS-SCEEEEEECSSSSEEEEEESSSCEEEEETTT-----------CCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred eecccC-CcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEeccCCcEEEEEEcCCCCEEEEEeC
Confidence 456788 5999999999999999999999999999987 6778899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|++|++||+.+. +.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.++.++..+.+|
T Consensus 171 D~~i~iwd~~~~-----------------~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h 233 (410)
T 1vyh_C 171 DMTIKLWDFQGF-----------------ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGH 233 (410)
T ss_dssp TSCCCEEETTSS-----------------CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCeEEEEeCCCC-----------------ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCC
Confidence 999999999876 577888899999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC--------------------
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC-------------------- 226 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-------------------- 226 (689)
...|.++.|+|++.+|++++.|++|++||+++++....+..+... +.+++|+|+
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV------VECISWAPESSYSSISEATGSETKKSGKP 307 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC------EEEEEECCSCGGGGGGGCCSCC-------
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce------EEEEEEcCcccccchhhhccccccccCCC
Confidence 999999999999999999999999999999999888877766443 899999997
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
+.+|++++. ...+.+|+.........+.+|...|.+++|+|++
T Consensus 308 g~~l~sgs~----D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g--------------------------------- 350 (410)
T 1vyh_C 308 GPFLLSGSR----DKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGG--------------------------------- 350 (410)
T ss_dssp CCEEEEEET----TSEEEEEETTTTEEEEEEECCSSCEEEEEECSSS---------------------------------
T ss_pred CCEEEEEeC----CCeEEEEECCCCceEEEEECCCCcEEEEEEcCCC---------------------------------
Confidence 567888766 4567899999888888999999999999999987
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+|++|+.|+.|++||+.+++.+..+. .|...|++++|+|++.+|++|+.||+|++|++
T Consensus 351 ~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 351 KFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred CEEEEEeCCCeEEEEECCCCceEEEEc-CCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 799999999999999999999888775 57889999999999999999999999999986
No 3
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.7e-41 Score=353.06 Aligned_cols=287 Identities=20% Similarity=0.254 Sum_probs=250.2
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
+..+.+|. ..|++++|+|++++|++|+.||.|+|||+.+ +..+..+..|...|.+++|+|++++|++|
T Consensus 6 ~~~~~~h~-~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~s~ 73 (304)
T 2ynn_A 6 KKTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVELWNYET-----------QVEVRSIQVTETPVRAGKFIARKNWIIVG 73 (304)
T ss_dssp EEEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEEEGGGTEEEEE
T ss_pred EEeecCCC-CceEEEEECCCCCEEEEEcCCCcEEEEECCC-----------CceeEEeeccCCcEEEEEEeCCCCEEEEE
Confidence 34566788 6999999999999999999999999999987 78888999999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTAVL 163 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~~l 163 (689)
+.|+.|++||+.++ +.+..+.+|...|.+++|+|++.+|++++.|++|++||++++ .....+
T Consensus 74 s~d~~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~ 136 (304)
T 2ynn_A 74 SDDFRIRVFNYNTG-----------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTF 136 (304)
T ss_dssp ETTSEEEEEETTTC-----------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEE
T ss_pred CCCCEEEEEECCCC-----------------cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhh
Confidence 99999999999987 678889999999999999999999999999999999999887 566778
Q ss_pred ecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 164 RGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 164 ~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.+|...|.+++|+| ++.+|++++.|++|++||+++......+
T Consensus 137 ~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~------------------------------------- 179 (304)
T 2ynn_A 137 EGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL------------------------------------- 179 (304)
T ss_dssp CCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEE-------------------------------------
T ss_pred cccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCcccee-------------------------------------
Confidence 99999999999999 6789999999999999999754332211
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
..+|...+..+.|+|.. ++.+|++|+.|+.|++||
T Consensus 180 --------------~~~~~~~v~~~~~~~~~-------------------------------~~~~l~s~s~D~~i~iWd 214 (304)
T 2ynn_A 180 --------------TTGQERGVNYVDYYPLP-------------------------------DKPYMITASDDLTIKIWD 214 (304)
T ss_dssp --------------ECCCTTCEEEEEECCST-------------------------------TCCEEEEEETTSEEEEEE
T ss_pred --------------ccCCcCcEEEEEEEEcC-------------------------------CCCEEEEEcCCCeEEEEe
Confidence 12355677888887753 347999999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
+++++++..+. .|...|.+++|+|++++|++++.||+|++||++++++...+ ..|.+.+.+++|+|
T Consensus 215 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~-------------~~~~~~~~~~~~~~ 280 (304)
T 2ynn_A 215 YQTKSCVATLE-GHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTL-------------NVGLERSWCIATHP 280 (304)
T ss_dssp TTTTEEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEE-------------CCSSSSEEEEEECT
T ss_pred CCCCccceeeC-CCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeec-------------cCCCccEEEEEECC
Confidence 99998888776 58899999999999999999999999999999988776433 34566799999999
Q ss_pred hhh--hhHhhccccce
Q 040062 403 AQL--LLEAASAKETT 416 (689)
Q Consensus 403 dg~--~Las~s~DG~v 416 (689)
++. +|++|+.||.+
T Consensus 281 ~~~~~~~asg~~~g~~ 296 (304)
T 2ynn_A 281 TGRKNYIASGFDNGFT 296 (304)
T ss_dssp TCGGGCEEEEETTEEE
T ss_pred CCCceEEEEecCCceE
Confidence 875 58888888876
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.6e-41 Score=386.45 Aligned_cols=335 Identities=21% Similarity=0.264 Sum_probs=272.6
Q ss_pred eeeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 8 WVRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
+.+|. ..|++++|+|++. +|++|+.|++|++||... .+.+.++.+|.+.|++++|+|+|++|++++.
T Consensus 143 l~gh~-~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-----------~~~~~~l~~H~~~V~~v~fspdg~~las~s~ 210 (611)
T 1nr0_A 143 LTGQA-RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----------FKFKSTFGEHTKFVHSVRYNPDGSLFASTGG 210 (611)
T ss_dssp CCCCS-SCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------BEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ecCCC-CCceEEEECCCCCeEEEEEeCCCeEEEEECCC-----------CeEeeeeccccCceEEEEECCCCCEEEEEEC
Confidence 45788 5999999999987 699999999999999876 6788899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-------cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-------GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
|++|++||+.++ +....+. +|...|.+++|+|++++|++++.|++|++||+.++++
T Consensus 211 D~~i~lwd~~~g-----------------~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~ 273 (611)
T 1nr0_A 211 DGTIVLYNGVDG-----------------TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV 273 (611)
T ss_dssp TSCEEEEETTTC-----------------CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred CCcEEEEECCCC-----------------cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCce
Confidence 999999999877 3444442 7999999999999999999999999999999988765
Q ss_pred EE-------------------------------------------EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 160 TA-------------------------------------------VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 160 ~~-------------------------------------------~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
+. .+.+|...|.+++|+|++++|++++.|++|++||+
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~ 353 (611)
T 1nr0_A 274 EKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 353 (611)
T ss_dssp EEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred eeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEEC
Confidence 44 34578999999999999999999999999999999
Q ss_pred CCCcceeecc-Ccccc---------------------------------------------------c------------
Q 040062 197 SDWSLAHRTD-GHWAK---------------------------------------------------S------------ 212 (689)
Q Consensus 197 ~~~~~~~~~~-~~~~~---------------------------------------------------~------------ 212 (689)
.++.....+. .+... .
T Consensus 354 ~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~ 433 (611)
T 1nr0_A 354 STGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 433 (611)
T ss_dssp TTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSE
T ss_pred CCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCce
Confidence 8765543321 00000 0
Q ss_pred ------------CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee-eeeecCCCCCEEEEEEcCCccccccc
Q 040062 213 ------------LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA-TFDFLGHNAPIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 213 ------------~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~h~~~v~~v~fsp~~~~~~~~ 279 (689)
.....+.+++|+|||++|++++.+ ..+++|+...... .....+|...|.+++|+|++
T Consensus 434 v~~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D----~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg------ 503 (611)
T 1nr0_A 434 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQD----SKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNG------ 503 (611)
T ss_dssp EEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETT----SEEEEEEEETTEEEEEEEEECSSCEEEEEECTTS------
T ss_pred EEEEeCCceeeeecCCCceEEEEeCCCCEEEEeCCC----CeEEEEEccCCceeeeeccCCCCceEEEEECCCC------
Confidence 001235788999999999998763 4677887654322 12226799999999999987
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC-CCceEE-ecccCCCCeEEEEEccCCCeEEEEeC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS-PRPLFV-AKHFFTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~-~~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~ 357 (689)
++|++++.|+.|++||+.+ ++.+.. ....|...|.+++|+|||++|++++.
T Consensus 504 ---------------------------~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~ 556 (611)
T 1nr0_A 504 ---------------------------AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556 (611)
T ss_dssp ---------------------------SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEET
T ss_pred ---------------------------CEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEEC
Confidence 8999999999999999987 444332 23348999999999999999999999
Q ss_pred CCcEEEEEeeccccccccChHHHHHHHHhccCCc-cCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 358 DGTVANFHFEVKELGHRLSDAELDELKRSRYGDV-RGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 358 DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~-~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
|++|++|+++.++... + .....| .+.|.+++|+||+. |++++.||+| +++.
T Consensus 557 D~~v~lW~~~~~~~~~-~----------~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i--~lW~ 608 (611)
T 1nr0_A 557 DNSVIVWNMNKPSDHP-I----------IIKGAHAMSSVNSVIWLNETT-IVSAGQDSNI--KFWN 608 (611)
T ss_dssp TSCEEEEETTCTTSCC-E----------EETTSSTTSCEEEEEEEETTE-EEEEETTSCE--EEEE
T ss_pred CCcEEEEECCCccccc-c----------hhhccCcccCeeEEEEcCCCE-EEEecCCCCE--EEEe
Confidence 9999999998654211 0 122346 67899999999999 9999999999 6664
No 5
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=347.19 Aligned_cols=288 Identities=20% Similarity=0.287 Sum_probs=260.1
Q ss_pred eeeecCceEEEEEEcCC----CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 8 WVRHEGMQIFSIDVQPG----ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 8 ~~~H~g~~I~si~~spd----g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
..+|. ..|++++|+|+ +.+|++|+.|+.|+||++.. ........+.+|...|.+++|++++.+|++
T Consensus 28 ~~~H~-~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~---------~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s 97 (321)
T 3ow8_A 28 EQAHD-DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRD---------ERLDLQWSLEGHQLGVVSVDISHTLPIAAS 97 (321)
T ss_dssp TTSSS-SCEEEEEEC-------CEEEEEETTSCEEEEEEET---------TEEEEEEEECCCSSCEEEEEECSSSSEEEE
T ss_pred cccCC-CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCC---------CCeeeeeeeccCCCCEEEEEECCCCCEEEE
Confidence 34688 59999999985 67999999999999999875 113445678999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
++.|+.|++||+.++ +.+..+..|...+.+++|+|++++|++++.|+.|++||+.+++....+
T Consensus 98 ~s~D~~i~lWd~~~~-----------------~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~ 160 (321)
T 3ow8_A 98 SSLDAHIRLWDLENG-----------------KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSL 160 (321)
T ss_dssp EETTSEEEEEETTTT-----------------EEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEE
T ss_pred EeCCCcEEEEECCCC-----------------CEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEe
Confidence 999999999999887 678888889999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+... +.+++|+|++++|++++. ...+
T Consensus 161 ~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~------v~~l~~spd~~~l~s~s~----dg~i 230 (321)
T 3ow8_A 161 DTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMP------IRSLTFSPDSQLLVTASD----DGYI 230 (321)
T ss_dssp ECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------CCEEEECTTSCEEEEECT----TSCE
T ss_pred cCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCc------eeEEEEcCCCCEEEEEcC----CCeE
Confidence 999999999999999999999999999999999999988888766443 889999999999999876 4567
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
.+|+.........+.+|...|.+++|+|++ .+|++++.|+.|++||+
T Consensus 231 ~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~---------------------------------~~l~s~s~D~~v~iwd~ 277 (321)
T 3ow8_A 231 KIYDVQHANLAGTLSGHASWVLNVAFCPDD---------------------------------THFVSSSSDKSVKVWDV 277 (321)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEECTTS---------------------------------SEEEEEETTSCEEEEET
T ss_pred EEEECCCcceeEEEcCCCCceEEEEECCCC---------------------------------CEEEEEeCCCcEEEEeC
Confidence 899988888888899999999999999987 79999999999999999
Q ss_pred CCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+++++..+. .|...|.+++|+|++++|++++.||.|++||+
T Consensus 278 ~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 278 GTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp TTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred CCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 9999888876 47889999999999999999999999999996
No 6
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=2.1e-39 Score=342.92 Aligned_cols=289 Identities=20% Similarity=0.283 Sum_probs=257.0
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|++++|+||+++|++|+.||.|+|||+.+ .+.+..+..|...|.+++|+|++++|++|+.
T Consensus 50 ~l~gH~-~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~ 117 (340)
T 1got_B 50 TLRGHL-AKIYAMHWGTDSRLLLSASQDGKLIIWDSYT-----------TNKVHAIPLRSSWVMTCAYAPSGNYVACGGL 117 (340)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTTEEEEEETTT-----------CCEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred eecCCC-CceEEEEECCCCCEEEEEeCCCcEEEEECCC-----------CCcceEeecCCccEEEEEECCCCCEEEEEeC
Confidence 456788 5999999999999999999999999999986 6778888999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|+.|++|++.+... .......+.+|...|.++.|++++. |++++.|+.|++||+.+++.+..+.+|
T Consensus 118 d~~v~iw~~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h 183 (340)
T 1got_B 118 DNICSIYNLKTREG-------------NVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGH 183 (340)
T ss_dssp TCEEEEEETTTCSB-------------SCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCeEEEEECccCCC-------------cceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCC
Confidence 99999999986521 1256778889999999999998764 899999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++|+|++++|++++.|++|++||++++.....+..+... +.+++|+|++++|++++. ...+.+|
T Consensus 184 ~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~------v~~v~~~p~~~~l~s~s~----d~~v~iw 253 (340)
T 1got_B 184 TGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------INAICFFPNGNAFATGSD----DATCRLF 253 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSC------EEEEEECTTSSEEEEEET----TSCEEEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCC------EEEEEEcCCCCEEEEEcC----CCcEEEE
Confidence 999999999999999999999999999999999888888766543 899999999999999876 4567799
Q ss_pred ecCCceeeeeec--CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 247 ERGEWAATFDFL--GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 247 ~~~~~~~~~~l~--~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
+.........+. .+...|.+++|+|++ .+|++|+.|+.|++||+.
T Consensus 254 d~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------------------------------~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 254 DLRADQELMTYSHDNIICGITSVSFSKSG---------------------------------RLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp ETTTTEEEEEECCTTCCSCEEEEEECTTS---------------------------------SEEEEEETTSEEEEEETT
T ss_pred ECCCCcEEEEEccCCcccceEEEEECCCC---------------------------------CEEEEECCCCeEEEEEcc
Confidence 887765554443 334579999999987 899999999999999999
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+++.+..+. .|...|.+++|+|+|++|++|+.||.|+|||
T Consensus 301 ~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 301 KADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp TCCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCcEeeEee-cCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 988887765 5899999999999999999999999999996
No 7
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-40 Score=350.56 Aligned_cols=301 Identities=17% Similarity=0.147 Sum_probs=238.1
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|. ..|.+++|+|||++|++++ |+++++||.....-.................|...|.+++|+|++ +|++|+.||.
T Consensus 28 ~~~-~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~ 104 (344)
T 4gqb_B 28 CME-RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGA 104 (344)
T ss_dssp SCC-SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSE
T ss_pred ccc-CCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCE
Confidence 355 5899999999999999887 678888874310000000000111222233467789999999985 6889999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
|+|||+.++.... .....+.+|...|++++|+|++++|++|+.|++|++||+.+++++..+.+|...
T Consensus 105 v~lWd~~~~~~~~-------------~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 105 VELWELDENETLI-------------VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp EEEEEECTTSSCE-------------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred EEEEeccCCCcee-------------EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 9999998874321 233456789999999999999999999999999999999999999999999999
Q ss_pred eEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 170 VKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 170 V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
|.+++|++++ .+|++++.|++|++||+++++....+..
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~----------------------------------------- 210 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGC----------------------------------------- 210 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC------------------------------------------
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeeeeec-----------------------------------------
Confidence 9999999988 5789999999999999988766554321
Q ss_pred CCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 249 GEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 249 ~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
..|...+.+++|+|++ +++|++|+.|+.|+|||++++++
T Consensus 211 ---------~~~~~~~~~~~~~p~~--------------------------------~~~l~sg~~dg~v~~wd~~~~~~ 249 (344)
T 4gqb_B 211 ---------SAPGYLPTSLAWHPQQ--------------------------------SEVFVFGDENGTVSLVDTKSTSC 249 (344)
T ss_dssp ------------CCCEEEEEECSSC--------------------------------TTEEEEEETTSEEEEEESCC--C
T ss_pred ---------ceeeccceeeeecCCC--------------------------------CcceEEeccCCcEEEEECCCCcE
Confidence 1244567888898863 47899999999999999999999
Q ss_pred eEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhh-
Q 040062 329 LFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLL- 406 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~- 406 (689)
+..+. .|...|++++|+|++ ++|++|+.||+|+|||++++++. .+.+|.+.|++++|+|++..
T Consensus 250 ~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--------------~~~~H~~~V~~v~~sp~~~~l 314 (344)
T 4gqb_B 250 VLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--------------RSQAHRDFVRDATWSPLNHSL 314 (344)
T ss_dssp CEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--------------EECCCSSCEEEEEECSSSTTE
T ss_pred EEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--------------EEcCCCCCEEEEEEeCCCCeE
Confidence 88876 588999999999998 57999999999999999887753 23468889999999999875
Q ss_pred hHhhccccceeeeeeeccc
Q 040062 407 LEAASAKETTTKKVVSDVQ 425 (689)
Q Consensus 407 Las~s~DG~v~~~~~~~~~ 425 (689)
|++++.||+| +.+..++
T Consensus 315 las~s~D~~v--~~w~v~~ 331 (344)
T 4gqb_B 315 LTTVGWDHQV--VHHVVPT 331 (344)
T ss_dssp EEEEETTSCE--EEEECCC
T ss_pred EEEEcCCCeE--EEEECCC
Confidence 6689999999 7776544
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=3.8e-39 Score=341.73 Aligned_cols=298 Identities=25% Similarity=0.451 Sum_probs=243.8
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCccccee---eeeecCCCCcEEEEEEcCCCCEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRL---LATLRDHFGSVNCVRWAKHGRYIA 82 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~v~fspdg~~La 82 (689)
..+.+|.+..|++++|+|+|++||+|+.|+.|+|||+.. ... .....+|.+.|.+++|+|++++|+
T Consensus 9 ~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~-----------~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~ 77 (345)
T 3fm0_A 9 GRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEG-----------DSWICKSVLSEGHQRTVRKVAWSPCGNYLA 77 (345)
T ss_dssp EEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEET-----------TEEEEEEEECSSCSSCEEEEEECTTSSEEE
T ss_pred eeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCC-----------CcceeeeeeccccCCcEEEEEECCCCCEEE
Confidence 345578855999999999999999999999999999875 221 223368999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC---eE
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG---IC 159 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~---~~ 159 (689)
+|+.|+.|+||++..+. +.....+.+|...|.+++|+|++++|++++.|+.|++||+.++ ++
T Consensus 78 s~s~D~~v~iw~~~~~~---------------~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~ 142 (345)
T 3fm0_A 78 SASFDATTCIWKKNQDD---------------FECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYEC 142 (345)
T ss_dssp EEETTSCEEEEEECCC----------------EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEE
T ss_pred EEECCCcEEEEEccCCC---------------eEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEE
Confidence 99999999999987652 2467788999999999999999999999999999999999875 45
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc--eeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL--AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
+..+.+|...|.+++|+|++++|++++.|++|++||+++... ...+..+.. .|.+++|+|+|++|++++.+
T Consensus 143 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~------~v~~l~~sp~g~~l~s~s~D- 215 (345)
T 3fm0_A 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES------TVWSLAFDPSGQRLASCSDD- 215 (345)
T ss_dssp EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSS------CEEEEEECTTSSEEEEEETT-
T ss_pred EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCC------ceEEEEECCCCCEEEEEeCC-
Confidence 677889999999999999999999999999999999987653 345555433 39999999999999998764
Q ss_pred CCccccceeecC---------------CceeeeeecC-CCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 238 KPRHSAPVLERG---------------EWAATFDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 238 ~~~~~~~i~~~~---------------~~~~~~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
..+++|+.. .+.....+.+ |...|..++|++++
T Consensus 216 ---~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~---------------------------- 264 (345)
T 3fm0_A 216 ---RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLT---------------------------- 264 (345)
T ss_dssp ---SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTT----------------------------
T ss_pred ---CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCC----------------------------
Confidence 455677531 1223334444 88899999999886
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCC----ce----EEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccc
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPR----PL----FVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~----~~----~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
..|++++.|+.|++|+..... +. ......|...|++++|+|++ .+|++|+.||+|++|++.+++..
T Consensus 265 -----~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~ 339 (345)
T 3fm0_A 265 -----GALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGL 339 (345)
T ss_dssp -----CCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC----
T ss_pred -----CEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCc
Confidence 789999999999999987643 11 22334688999999999998 49999999999999999887654
No 9
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-39 Score=365.29 Aligned_cols=316 Identities=29% Similarity=0.432 Sum_probs=276.8
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
+.+|. ..|.+++|+|++++|++++.|+.|++||.. .+.+..+.+|.+.|.+++|+|++++|++++.|
T Consensus 258 ~~~~~-~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~------------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d 324 (577)
T 2ymu_A 258 LTGHS-SSVNGVAFRPDGQTIASASDDKTVKLWNRN------------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDD 324 (577)
T ss_dssp ECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETT------------SCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEeCC------------CcEEEEEecCCCCeEEEEECCCCCEEEEEeCC
Confidence 44677 599999999999999999999999999976 46778889999999999999999999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
+.|++||+... ....+.+|...|.+++|+|++++|++++.|+.|++||. +++.+..+.+|.
T Consensus 325 ~~i~~w~~~~~------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~ 385 (577)
T 2ymu_A 325 KTVKLWNRNGQ------------------HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS 385 (577)
T ss_dssp SCEEEEETTSC------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCS
T ss_pred CeEEEEeCCCC------------------eeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCC
Confidence 99999998653 56678899999999999999999999999999999995 678888999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.+++|+|++++|++++.|+.|++||. +++.+..+..+.. .+.+++|+|++++|++++.+ ..+.+|+
T Consensus 386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~------~v~~~~~s~d~~~l~~~~~d----~~v~~w~ 454 (577)
T 2ymu_A 386 SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS------SVWGVAFSPDDQTIASASDD----KTVKLWN 454 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS------CEEEEEECTTSSEEEEEETT----SEEEEEE
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC------CeEEEEECCCCCEEEEEcCC----CEEEEEE
Confidence 99999999999999999999999999996 5566666665543 38999999999999998764 4567887
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
.. ......+.+|...|.+++|+|++ ++|++++.|+.|++||. +++
T Consensus 455 ~~-~~~~~~~~~~~~~v~~~~~spd~---------------------------------~~las~~~d~~i~iw~~-~~~ 499 (577)
T 2ymu_A 455 RN-GQLLQTLTGHSSSVRGVAFSPDG---------------------------------QTIASASDDKTVKLWNR-NGQ 499 (577)
T ss_dssp TT-SCEEEEEECCSSCEEEEEECTTS---------------------------------CEEEEEETTSEEEEEET-TSC
T ss_pred CC-CCEEEEEcCCCCCEEEEEEcCCC---------------------------------CEEEEEeCCCEEEEEcC-CCC
Confidence 53 45556788999999999999987 89999999999999995 566
Q ss_pred ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhh
Q 040062 328 PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLL 407 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~L 407 (689)
.+..+. .|...|++++|+|||++|++++.||.|++||.. ++.. ..+..|.+.|++++|+|||++|
T Consensus 500 ~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~~~~-------------~~~~~h~~~v~~~~fs~dg~~l 564 (577)
T 2ymu_A 500 LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-------------QTLTGHSSSVWGVAFSPDGQTI 564 (577)
T ss_dssp EEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-SCEE-------------EEEECCSSCEEEEEECTTSSCE
T ss_pred EEEEEe-CCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-CCEE-------------EEEcCCCCCEEEEEEcCCCCEE
Confidence 666665 588999999999999999999999999999964 4433 3334588899999999999999
Q ss_pred Hhhccccce
Q 040062 408 EAASAKETT 416 (689)
Q Consensus 408 as~s~DG~v 416 (689)
++++.||+|
T Consensus 565 ~s~~~D~~i 573 (577)
T 2ymu_A 565 ASASSDKTV 573 (577)
T ss_dssp EEEETTSCE
T ss_pred EEEeCCCEE
Confidence 999999998
No 10
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.7e-38 Score=337.99 Aligned_cols=292 Identities=18% Similarity=0.211 Sum_probs=254.1
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|+|++|+|++++|++|+.||.|+|||..+ .+....+..|...|.+++|+|+|.+|++++.
T Consensus 59 ~l~gH~-~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~-----------~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~ 126 (354)
T 2pbi_B 59 TLKGHG-NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFT-----------TNKEHAVTMPCTWVMACAYAPSGCAIACGGL 126 (354)
T ss_dssp EEECCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCEEEEEECSSSCCCEEEECTTSSEEEEEST
T ss_pred EecCCC-CeEEEEEECCCCCEEEEEeCCCeEEEEECCC-----------CCcceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 456788 5999999999999999999999999999876 6677788889999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|+.+++|++...... ........+.+|...|.+++|++++..|++++.|++|++||+.+++.+..+.+|
T Consensus 127 d~~i~v~~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h 195 (354)
T 2pbi_B 127 DNKCSVYPLTFDKNE-----------NMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGH 195 (354)
T ss_dssp TSEEEEEECCCCTTC-----------CSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCCEEEEEEeccccc-----------cccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCC
Confidence 999999998754211 001234556789999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 167 SSLVKGVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 167 ~~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
...|.+++|+| ++++|++++.|++|++||+++++++..+..+... +.+++|+|++.+|++++. ...++
T Consensus 196 ~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~------v~~v~~~p~~~~l~s~s~----D~~v~ 265 (354)
T 2pbi_B 196 GADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESD------VNSVRYYPSGDAFASGSD----DATCR 265 (354)
T ss_dssp SSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSC------EEEEEECTTSSEEEEEET----TSCEE
T ss_pred CCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC------eEEEEEeCCCCEEEEEeC----CCeEE
Confidence 99999999988 5689999999999999999999988888766443 999999999999999876 45677
Q ss_pred eeecCCceeeeeecC--CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 245 VLERGEWAATFDFLG--HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 245 i~~~~~~~~~~~l~~--h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
+|+.........+.. +...+.+++|+|++ .+|++|+.|+.|++||
T Consensus 266 lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g---------------------------------~~l~~g~~d~~i~vwd 312 (354)
T 2pbi_B 266 LYDLRADREVAIYSKESIIFGASSVDFSLSG---------------------------------RLLFAGYNDYTINVWD 312 (354)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEECTTS---------------------------------SEEEEEETTSCEEEEE
T ss_pred EEECCCCcEEEEEcCCCcccceeEEEEeCCC---------------------------------CEEEEEECCCcEEEEE
Confidence 898776655444433 34578899999886 8999999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+.+++.+..+. .|...|++++|+|||++|++|+.||+|++|+
T Consensus 313 ~~~~~~~~~l~-~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 313 VLKGSRVSILF-GHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTTCSEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCCCceEEEEE-CCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 99998887765 5899999999999999999999999999995
No 11
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.6e-39 Score=353.20 Aligned_cols=308 Identities=21% Similarity=0.280 Sum_probs=264.4
Q ss_pred eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 58 LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
....+.+|.+.|++++|+|++.+|++|+.||.|+|||+.++ +....+.+|...|.+++|+|++
T Consensus 100 ~~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~-----------------~~~~~l~~h~~~V~~v~~~~~~ 162 (410)
T 1vyh_C 100 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG-----------------DFERTLKGHTDSVQDISFDHSG 162 (410)
T ss_dssp CSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC-----------------CCCEEECCCSSCEEEEEECTTS
T ss_pred ceEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------cEEEEEeccCCcEEEEEEcCCC
Confidence 35567899999999999999999999999999999999887 4567788999999999999999
Q ss_pred CEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCccc
Q 040062 138 SILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTF 217 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 217 (689)
++|++|+.|++|++||+.+++++..+.+|...|.+++|+|++++|++++.|++|++||++++.++..+..+.. .
T Consensus 163 ~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~------~ 236 (410)
T 1vyh_C 163 KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE------W 236 (410)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS------C
T ss_pred CEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc------c
Confidence 9999999999999999999999999999999999999999999999999999999999999998888876644 3
Q ss_pred EEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccc
Q 040062 218 FRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSK 297 (689)
Q Consensus 218 i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (689)
+..+.|++++.++++++.+ ..+.+|+.........+.+|...|.+++|+|+........... .
T Consensus 237 v~~~~~~~~g~~l~s~s~D----~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~-------------~ 299 (410)
T 1vyh_C 237 VRMVRPNQDGTLIASCSND----QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATG-------------S 299 (410)
T ss_dssp EEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCS-------------C
T ss_pred EEEEEECCCCCEEEEEcCC----CeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhcc-------------c
Confidence 8999999999999998764 5678999888888888999999999999999853211100000 0
Q ss_pred ccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccCh
Q 040062 298 IGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSD 377 (689)
Q Consensus 298 ~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~ 377 (689)
........+.+|++|+.|+.|++||++++.++..+. .|...|.+++|+|+|++|++++.||.|++||+.+++...
T Consensus 300 ~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~---- 374 (410)
T 1vyh_C 300 ETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK---- 374 (410)
T ss_dssp C-------CCEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCE----
T ss_pred cccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEE-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEE----
Confidence 001112246899999999999999999998888775 588999999999999999999999999999998876653
Q ss_pred HHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 378 AELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 378 ~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
.+..|...|++++|+|++.+|++|+.||+| +++
T Consensus 375 ---------~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i--~vW 407 (410)
T 1vyh_C 375 ---------TLNAHEHFVTSLDFHKTAPYVVTGSVDQTV--KVW 407 (410)
T ss_dssp ---------EEECCSSCEEEEEECSSSSCEEEEETTSEE--EEE
T ss_pred ---------EEcCCCCcEEEEEEcCCCCEEEEEeCCCcE--EEE
Confidence 334577889999999999999999999999 554
No 12
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=7.1e-39 Score=341.35 Aligned_cols=296 Identities=18% Similarity=0.180 Sum_probs=240.5
Q ss_pred eecCceEEEEEEcCCCCEEEEEeC------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGG------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
.|. ..|++++|||||++||+|+. |+.|++|+..... ..........+|...|++++|+|+++ +++
T Consensus 40 ~H~-~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~-------~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~ 110 (357)
T 4g56_B 40 CME-VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGA-------PNESLCTAGVQTEAGVTDVAWVSEKG-ILV 110 (357)
T ss_dssp CCC-SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC----------CGGGCSEEEECSSCEEEEEEETTTE-EEE
T ss_pred ccc-CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCC-------cceeEecccCCCCCCEEEEEEcCCCC-EEE
Confidence 588 59999999999999999997 7889999876511 11233445567899999999999986 456
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
++.||.|+|||+.++.... .......+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+
T Consensus 111 ~s~dg~v~lWd~~~~~~~~-------------~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~ 177 (357)
T 4g56_B 111 ASDSGAVELWEILEKESLL-------------VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY 177 (357)
T ss_dssp EETTSCEEEC--------C-------------CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred EECCCEEEEeeccccceeE-------------EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 7889999999998764211 112345579999999999999999999999999999999999999999
Q ss_pred ecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC-CeEEEecCCCCCcc
Q 040062 164 RGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG-HFITTTHGFQKPRH 241 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l~~~~~~~~~~~ 241 (689)
.+|...|.+++|++++. +|++++.|++|++||+++++....+.... ....+.+++|+|++ .+|++++. ..
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~----~~~~v~~v~~sp~~~~~la~g~~----d~ 249 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCA----SDTIPTSVTWHPEKDDTFACGDE----TG 249 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTT----CCSCEEEEEECTTSTTEEEEEES----SS
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeecc----ccccccchhhhhcccceEEEeec----cc
Confidence 99999999999999874 78999999999999999988776654332 22348899999986 45666544 35
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.+.+|+.........+.+|...|.+++|+|++ .++|++|+.|+.|+||
T Consensus 250 ~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~--------------------------------~~~lasgs~D~~i~iw 297 (357)
T 4g56_B 250 NVSLVNIKNPDSAQTSAVHSQNITGLAYSYHS--------------------------------SPFLASISEDCTVAVL 297 (357)
T ss_dssp CEEEEESSCGGGCEEECCCSSCEEEEEECSSS--------------------------------SCCEEEEETTSCEEEE
T ss_pred ceeEEECCCCcEeEEEeccceeEEEEEEcCCC--------------------------------CCEEEEEeCCCEEEEE
Confidence 67799988888888899999999999999985 3689999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEcc-CCCeEEEEeCCCcEEEEEeecc
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSP-DGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~sp-dg~~L~sgs~DG~I~vwd~~~~ 369 (689)
|+++++.+..+ .|...|++++|+| |+.+|++++.||+|++|++...
T Consensus 298 d~~~~~~~~~~--~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 298 DADFSEVFRDL--SHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp CTTSCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred ECCCCcEeEEC--CCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99998877654 5899999999998 8999999999999999998653
No 13
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=335.53 Aligned_cols=293 Identities=16% Similarity=0.248 Sum_probs=258.8
Q ss_pred ceeeeeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEE
Q 040062 56 QRLLATLRDHFGSVNCVRWAKH----GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDL 131 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspd----g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 131 (689)
+.....+.+|.+.|.+++|+|+ +.+|++|+.|++|+||++..+. ......+.+|...|.++
T Consensus 22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~---------------~~~~~~l~gh~~~v~~~ 86 (321)
T 3ow8_A 22 GILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDER---------------LDLQWSLEGHQLGVVSV 86 (321)
T ss_dssp EEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEE
T ss_pred hheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCC---------------eeeeeeeccCCCCEEEE
Confidence 5556677899999999999974 6799999999999999997652 13455788999999999
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 132 NWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 132 ~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
+|++++.++++++.|+.|++||+.+++.+..+..|...+.+++|+|++++|++++.|+.|++||+++++....+..+..
T Consensus 87 ~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~- 165 (321)
T 3ow8_A 87 DISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK- 165 (321)
T ss_dssp EECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS-
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999888777665433
Q ss_pred cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
.+.+++|+|++++|++++.+ ..+.+|+.........+.+|..+|.+++|+|++
T Consensus 166 -----~v~~~~~spdg~~lasg~~d----g~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~------------------ 218 (321)
T 3ow8_A 166 -----FILSIAYSPDGKYLASGAID----GIINIFDIATGKLLHTLEGHAMPIRSLTFSPDS------------------ 218 (321)
T ss_dssp -----CEEEEEECTTSSEEEEEETT----SCEEEEETTTTEEEEEECCCSSCCCEEEECTTS------------------
T ss_pred -----eEEEEEECCCCCEEEEEcCC----CeEEEEECCCCcEEEEEcccCCceeEEEEcCCC------------------
Confidence 38999999999999998764 567799998888888899999999999999987
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
.+|++|+.|+.|++||+++++.+..+. .|...|.+++|+|++++|++++.||+|++||+.+++.
T Consensus 219 ---------------~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 282 (321)
T 3ow8_A 219 ---------------QLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC 282 (321)
T ss_dssp ---------------CEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred ---------------CEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE
Confidence 799999999999999999988877765 5789999999999999999999999999999988776
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.. .+..|.+.|.+++|+|++.+|++++.||+| +++.
T Consensus 283 ~~-------------~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i--~vwd 318 (321)
T 3ow8_A 283 VH-------------TFFDHQDQVWGVKYNGNGSKIVSVGDDQEI--HIYD 318 (321)
T ss_dssp EE-------------EECCCSSCEEEEEECTTSSEEEEEETTCCE--EEEE
T ss_pred EE-------------EEcCCCCcEEEEEECCCCCEEEEEeCCCeE--EEEe
Confidence 53 334577889999999999999999999999 6654
No 14
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.8e-38 Score=328.83 Aligned_cols=295 Identities=21% Similarity=0.324 Sum_probs=253.9
Q ss_pred cCceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
...+.+|. ..|++++|+|++ ++|++|+.|+.|++|++.... ...+..+..+.+|...|.+++|+|++++|++
T Consensus 10 ~~~l~gH~-~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~------~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s 82 (319)
T 3frx_A 10 RGTLEGHN-GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDD------QKFGVPVRSFKGHSHIVQDCTLTADGAYALS 82 (319)
T ss_dssp EEEECCCS-SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEET------TEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred EEEEcccc-ceEEEEEccCCCccEEEEecCCccEEEecCCCCC------ccccccceEEeCCcccEEEEEECCCCCEEEE
Confidence 34566898 599999999965 899999999999999987411 1124567889999999999999999999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
|+.|++|++||+.++ +....+.+|...|.+++|+|++.+|++++.|+.|++||++ ++++..+
T Consensus 83 ~s~D~~v~~wd~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~ 144 (319)
T 3frx_A 83 ASWDKTLRLWDVATG-----------------ETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATL 144 (319)
T ss_dssp EETTSEEEEEETTTT-----------------EEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEE
T ss_pred EeCCCEEEEEECCCC-----------------CeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEE
Confidence 999999999999987 7888899999999999999999999999999999999995 5678888
Q ss_pred ecCCCCeEEEEEccC------CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 164 RGHSSLVKGVAWDPI------GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 164 ~~h~~~V~~l~~spd------g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
.+|...|.++.|+|. +.+|++++.|+.|++||+++.+....+..+... +.+++|+|+|++|++++.
T Consensus 145 ~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~------v~~~~~sp~g~~l~s~~~-- 216 (319)
T 3frx_A 145 LGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSN------INTLTASPDGTLIASAGK-- 216 (319)
T ss_dssp CCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSC------EEEEEECTTSSEEEEEET--
T ss_pred eccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCc------EEEEEEcCCCCEEEEEeC--
Confidence 999999999999985 458999999999999999998888877766544 899999999999999876
Q ss_pred CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
...+.+|+.........+.. ...+.+++|+|++ .+|++++.+ .
T Consensus 217 --dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~---------------------------------~~la~~~~~-~ 259 (319)
T 3frx_A 217 --DGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNR---------------------------------YWLAAATAT-G 259 (319)
T ss_dssp --TCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSS---------------------------------SEEEEEETT-E
T ss_pred --CCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCC---------------------------------CEEEEEcCC-C
Confidence 45788999988877777765 4689999999987 677777654 5
Q ss_pred EEEEeCCCCCceEEecc-------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 318 ITVWTTASPRPLFVAKH-------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
+++|++.....+..+.. .|...+.+++|+|||++|++|+.||.|++||+.++
T Consensus 260 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 260 IKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp EEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred cEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence 99999987766555432 24567999999999999999999999999999764
No 15
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.9e-37 Score=323.11 Aligned_cols=290 Identities=22% Similarity=0.373 Sum_probs=253.5
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|++++|+|++++|++|+.||.|+||++.. ++....+.+|...|.+++|+|++++|++++.
T Consensus 18 ~~~gh~-~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 85 (312)
T 4ery_A 18 TLAGHT-KAVSSVKFSPNGEWLASSSADKLIKIWGAYD-----------GKFEKTISGHKLGISDVAWSSDSNLLVSASD 85 (312)
T ss_dssp EECCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEcccC-CcEEEEEECCCCCEEEEeeCCCeEEEEeCCC-----------cccchhhccCCCceEEEEEcCCCCEEEEECC
Confidence 345788 5999999999999999999999999999986 6778889999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|+.|++||+.++ +.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..|
T Consensus 86 d~~i~vwd~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 148 (312)
T 4ery_A 86 DKTLKIWDVSSG-----------------KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAH 148 (312)
T ss_dssp TSEEEEEETTTC-----------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCC
T ss_pred CCEEEEEECCCC-----------------cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCC
Confidence 999999999887 677888999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++|+|++++|++++.|+.|++||+++++.+..+.... ...+..++|+|++++|++++. ...+.+|
T Consensus 149 ~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~----d~~i~iw 219 (312)
T 4ery_A 149 SDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-----NPPVSFVKFSPNGKYILAATL----DNTLKLW 219 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS-----CCCEEEEEECTTSSEEEEEET----TTEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC-----CCceEEEEECCCCCEEEEEcC----CCeEEEE
Confidence 9999999999999999999999999999999988776654321 223788999999999999876 3567899
Q ss_pred ecCCceeeeeecCCCCCEEE--EEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 247 ERGEWAATFDFLGHNAPIIV--VKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~--v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
+.........+.+|.....+ ..|++. ++.+|++|+.||.|++||+.
T Consensus 220 d~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~l~sg~~dg~i~vwd~~ 267 (312)
T 4ery_A 220 DYSKGKCLKTYTGHKNEKYCIFANFSVT--------------------------------GGKWIVSGSEDNLVYIWNLQ 267 (312)
T ss_dssp ETTTTEEEEEECSSCCSSSCCCEEEECS--------------------------------SSCEEEECCTTSCEEEEETT
T ss_pred ECCCCcEEEEEEecCCceEEEEEEEEeC--------------------------------CCcEEEEECCCCEEEEEECC
Confidence 98888777777777654322 223222 34799999999999999999
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEe--CCCcEEEEEee
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS--LDGTVANFHFE 367 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~DG~I~vwd~~ 367 (689)
+++.+..+. .|...|.+++|+|++.+|++++ .|+.|++|+.+
T Consensus 268 ~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 268 TKEIVQKLQ-GHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp TCCEEEEEC-CCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred Cchhhhhhh-ccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 998887775 5788999999999999999987 69999999864
No 16
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.4e-38 Score=332.11 Aligned_cols=287 Identities=21% Similarity=0.270 Sum_probs=255.3
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+...++.+|.+.|++++|+|++++|++|+.||.|+|||+.++ .....+..|...|.+++|+|
T Consensus 45 ~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~-----------------~~~~~~~~~~~~v~~~~~s~ 107 (340)
T 1got_B 45 MRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTT-----------------NKVHAIPLRSSWVMTCAYAP 107 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC-----------------CEEEEEECSSSCEEEEEECT
T ss_pred chhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCC-----------------CcceEeecCCccEEEEEECC
Confidence 4567789999999999999999999999999999999999887 57778889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC----eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 136 DDSILASGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
++++|++++.|+.|++||+.+. .....+.+|...|.++.|++++. |++++.|++|++||+++++....+..+...
T Consensus 108 ~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~ 186 (340)
T 1got_B 108 SGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGD 186 (340)
T ss_dssp TSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCc
Confidence 9999999999999999999875 46677889999999999998765 889999999999999999988888766544
Q ss_pred cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
+.+++|+|+++++++++. ...+.+|+.........+.+|...|.+++|+|++
T Consensus 187 ------v~~~~~~~~~~~l~sg~~----d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~------------------ 238 (340)
T 1got_B 187 ------VMSLSLAPDTRLFVSGAC----DASAKLWDVREGMCRQTFTGHESDINAICFFPNG------------------ 238 (340)
T ss_dssp ------EEEEEECTTSSEEEEEET----TSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS------------------
T ss_pred ------eEEEEECCCCCEEEEEeC----CCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCC------------------
Confidence 899999999999999876 4567899998888888899999999999999987
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
++|++|+.|+.|++||+++++.+..+.. .+...|.+++|+|+|++|++|+.||.|++||+.+++
T Consensus 239 ---------------~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~ 303 (340)
T 1got_B 239 ---------------NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKAD 303 (340)
T ss_dssp ---------------SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred ---------------CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCc
Confidence 8999999999999999999887766543 233579999999999999999999999999998766
Q ss_pred cccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 371 LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 371 l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
... .+..|.+.|.+++|+|||.+|++++.||+|
T Consensus 304 ~~~-------------~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i 336 (340)
T 1got_B 304 RAG-------------VLAGHDNRVSCLGVTDDGMAVATGSWDSFL 336 (340)
T ss_dssp EEE-------------EEECCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred Eee-------------EeecCCCcEEEEEEcCCCCEEEEEcCCccE
Confidence 543 334588899999999999999999999998
No 17
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-39 Score=350.24 Aligned_cols=351 Identities=14% Similarity=0.205 Sum_probs=276.2
Q ss_pred ceEEEEEEcCCCC-EEEEE----------eCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE
Q 040062 14 MQIFSIDVQPGAL-RFATG----------GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA 82 (689)
Q Consensus 14 ~~I~si~~spdg~-~Latg----------s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La 82 (689)
..|.+++|+|+++ +|++| +.|+.|+|||+.... ..+.+..+ .|...|++++|+|++++|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~--------~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 83 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAAD--------SEKPIASL-QVDSKFNDLDWSHNNKIIA 83 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGG--------GCSCSCCC-CCSSCEEEEEECSSSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCC--------CCcEEEEE-ecCCceEEEEECCCCCeEE
Confidence 4799999999997 99999 889999999998611 01233334 5889999999999999999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCe---
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGI--- 158 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~--- 158 (689)
+++.||.|++|++..... .......+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+++
T Consensus 84 ~~~~dg~v~vw~~~~~~~-------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 150 (416)
T 2pm9_A 84 GALDNGSLELYSTNEANN-------------AINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150 (416)
T ss_dssp EEESSSCEEEECCSSTTS-------------CCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT
T ss_pred EEccCCeEEEeecccccc-------------cccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 999999999999987210 01477788899999999999998 8899999999999999999876
Q ss_pred ---EEEE---EecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC-CeE
Q 040062 159 ---CTAV---LRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG-HFI 230 (689)
Q Consensus 159 ---~~~~---l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg-~~l 230 (689)
.... +..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..+.........+.+++|+|++ .++
T Consensus 151 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 151 SNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred ccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 3332 3678999999999999 7899999999999999999998888776653221113459999999998 466
Q ss_pred EEecCCCCCccccceeecCCc-eeeeeec-CCCCCEEEEEEcC-CccccccccccccccccccccCCcccccCccCCCCc
Q 040062 231 TTTHGFQKPRHSAPVLERGEW-AATFDFL-GHNAPIIVVKFNH-SMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 231 ~~~~~~~~~~~~~~i~~~~~~-~~~~~l~-~h~~~v~~v~fsp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
+++..++ ....+.+|+.... .....+. +|...|.+++|+| ++ .
T Consensus 231 ~~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---------------------------------~ 276 (416)
T 2pm9_A 231 ATATGSD-NDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDE---------------------------------H 276 (416)
T ss_dssp EEEECCS-SSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCS---------------------------------S
T ss_pred EEEECCC-CCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCC---------------------------------C
Confidence 6665432 2236788988765 4455666 8999999999998 54 7
Q ss_pred EEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccccccCh----HHHHH
Q 040062 308 VIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELGHRLSD----AELDE 382 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~~~l~~----~~~~~ 382 (689)
+|++++.|+.|++||+++++++..+. .|...|.+++|+|++ .+|++++.||.|++|++...+....... .....
T Consensus 277 ~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~ 355 (416)
T 2pm9_A 277 LLLSSGRDNTVLLWNPESAEQLSQFP-ARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESE 355 (416)
T ss_dssp CEEEEESSSEEEEECSSSCCEEEEEE-CSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC-----------
T ss_pred eEEEEeCCCCEEEeeCCCCccceeec-CCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCc
Confidence 99999999999999999999888776 578899999999999 8999999999999999988765433211 00000
Q ss_pred HHHhccCC------------------ccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 383 LKRSRYGD------------------VRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 383 ~~~~~~g~------------------~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
......+. +...+..++|+|||++|++++.||+| +++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v--~~w~~ 412 (416)
T 2pm9_A 356 TDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGV--SITNP 412 (416)
T ss_dssp -----------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCB--CCBCC
T ss_pred ccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeE--EEEEe
Confidence 00011111 45567899999999999999999999 66543
No 18
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.7e-38 Score=339.63 Aligned_cols=336 Identities=17% Similarity=0.253 Sum_probs=274.3
Q ss_pred eeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeC----CcCCCCCCCCcccce------eeeeecC----------CCC
Q 040062 9 VRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNM----KSVGKNFENDESTQR------LLATLRD----------HFG 67 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~----~~~~~~~~~~~~~~~------~~~~l~~----------h~~ 67 (689)
..|. .+|++++|+|+++ +||+|+.||.|+|||+ .. ++ ....+.. |.+
T Consensus 42 ~~~~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (425)
T 1r5m_A 42 IVKL-DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQE-----------GKKYWKLTIIAELRHPFALSASSGKTTN 109 (425)
T ss_dssp EEEC-SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC-----------------CEEEEEEEEEECCCCCC------CB
T ss_pred eecc-CceEEEEECCCCCcEEEEecCCceEEEEEEecccCC-----------ccccccccccccccccccccccccCCCC
Confidence 3455 5999999999999 9999999999999999 64 22 2333333 688
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN 147 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg 147 (689)
.|++++|+|++++|++++.||.|++||. ++ .....+..|...|.+++|+|++++|++++.|+
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~ 171 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNK-TG-----------------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVEN 171 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEET-TS-----------------CEEEEECCCCSCEEEEEECTTSSEEEEEETTC
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeC-CC-----------------CeeeeccCCCccEEEEEECCCCCEEEEEecCC
Confidence 9999999999999999999999999993 33 57778889999999999999999999999999
Q ss_pred eEEEEEcCCCeEEEEEecCCCC---------------eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 148 TIHIWNMSTGICTAVLRGHSSL---------------VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 148 ~I~vwd~~~~~~~~~l~~h~~~---------------V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
.|++||+.+++.+..+..+... +.+++|++++ .+++++.|+.|++||+++++....+..+..
T Consensus 172 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~-- 248 (425)
T 1r5m_A 172 VTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKLIGHHG-- 248 (425)
T ss_dssp CEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEECCCSS--
T ss_pred eEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeeeccCCC--
Confidence 9999999999999999888776 9999999875 588899999999999999888877765543
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
.+.+++|+|++++|++++. ...+.+|+.........+.+|...+.++.|+|++
T Consensus 249 ----~i~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~------------------- 301 (425)
T 1r5m_A 249 ----PISVLEFNDTNKLLLSASD----DGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD------------------- 301 (425)
T ss_dssp ----CEEEEEEETTTTEEEEEET----TSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-------------------
T ss_pred ----ceEEEEECCCCCEEEEEcC----CCEEEEEECCCCccceEecCCCccEEEEEECCCC-------------------
Confidence 3899999999999999875 3567789888887778888999999999999873
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
++++++.|+.|++||+.+++.+..+. .|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus 302 ---------------~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~ 365 (425)
T 1r5m_A 302 ---------------KVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSK 365 (425)
T ss_dssp ---------------EEEEEETTSEEEEEETTTTEEEEEEE-CTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-
T ss_pred ---------------EEEEEeCCCcEEEEECCCCcEeEecc-cCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccc
Confidence 89999999999999999998887765 46889999999999999999999999999999877611
Q ss_pred c-ccChHHHHHH------HHhccCCccC--ceeeeecCchhhhhHhhccccceeeeeee
Q 040062 373 H-RLSDAELDEL------KRSRYGDVRG--RLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 373 ~-~l~~~~~~~~------~~~~~g~~~~--~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
. .+.......+ ....+..|.. .|.+++|+|++.+|++++.||.| +++.
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i--~iw~ 422 (425)
T 1r5m_A 366 SRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG--SVVA 422 (425)
T ss_dssp -------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC--EEEE
T ss_pred eeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE--EEEe
Confidence 1 0000000000 1133444544 89999999999999999999999 5554
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.5e-37 Score=351.97 Aligned_cols=320 Identities=30% Similarity=0.452 Sum_probs=276.7
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
+..|. ..|.+++|+|++++|++++.|+.|++||.. .+.+..+.+|...|++++|+|++++|++++.|
T Consensus 217 ~~~~~-~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~------------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d 283 (577)
T 2ymu_A 217 LTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNRN------------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDD 283 (577)
T ss_dssp EECCS-SCEEEEEECTTSSCEEEEETTSCEEEECTT------------SCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred EecCC-CCEEEEEECCCCCEEEEEeCCCEEEEEeCC------------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Confidence 45677 599999999999999999999999999975 46788899999999999999999999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
+.|++|+... +....+.+|...|.+++|+|++++|++++.|+.|++||.. +..+..+.+|.
T Consensus 284 ~~i~~w~~~~------------------~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~-~~~~~~~~~~~ 344 (577)
T 2ymu_A 284 KTVKLWNRNG------------------QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN-GQHLQTLTGHS 344 (577)
T ss_dssp SCEEEEETTS------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCCS
T ss_pred CEEEEEeCCC------------------cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCC-CCeeEEEeCCC
Confidence 9999999754 4677888999999999999999999999999999999975 45667788999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.+++|+|++++|++++.|+.|++||. +++.+..+..+.. .+.+++|+|++++|++++.+ ..+.+|+
T Consensus 345 ~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~------~v~~~~~s~dg~~l~~~~~d----~~v~~~~ 413 (577)
T 2ymu_A 345 SSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS------SVRGVAFSPDGQTIASASDD----KTVKLWN 413 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS------CEEEEEECTTSSCEEEEETT----SEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC------CeEEEEECCCCCEEEEEeCC----CEEEEEe
Confidence 99999999999999999999999999996 5566666665543 38999999999999998763 4567887
Q ss_pred cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC
Q 040062 248 RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR 327 (689)
Q Consensus 248 ~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~ 327 (689)
.. ......+.+|...|.+++|+|++ ++|++++.|+.|++||. +++
T Consensus 414 ~~-~~~~~~~~~~~~~v~~~~~s~d~---------------------------------~~l~~~~~d~~v~~w~~-~~~ 458 (577)
T 2ymu_A 414 RN-GQLLQTLTGHSSSVWGVAFSPDD---------------------------------QTIASASDDKTVKLWNR-NGQ 458 (577)
T ss_dssp TT-CCEEEEEECCSSCEEEEEECTTS---------------------------------SEEEEEETTSEEEEEET-TSC
T ss_pred CC-CCEEEEecCCCCCeEEEEECCCC---------------------------------CEEEEEcCCCEEEEEEC-CCC
Confidence 53 44556778999999999999986 79999999999999996 455
Q ss_pred ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhh
Q 040062 328 PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLL 407 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~L 407 (689)
.+..+. .|...|.+++|+||+++|++++.|+.|++||.. +++. ..+..|...|++++|+|||++|
T Consensus 459 ~~~~~~-~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~-------------~~~~~h~~~v~~l~~s~dg~~l 523 (577)
T 2ymu_A 459 LLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-------------QTLTGHSSSVRGVAFSPDGQTI 523 (577)
T ss_dssp EEEEEE-CCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE-------------EEEECCSSCEEEEEECTTSSCE
T ss_pred EEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEE-------------EEEeCCCCCEEEEEEcCCCCEE
Confidence 555554 578999999999999999999999999999964 4433 2333577889999999999999
Q ss_pred Hhhccccceeeeeee
Q 040062 408 EAASAKETTTKKVVS 422 (689)
Q Consensus 408 as~s~DG~v~~~~~~ 422 (689)
++++.||.| +++.
T Consensus 524 ~s~~~dg~v--~lwd 536 (577)
T 2ymu_A 524 ASASDDKTV--KLWN 536 (577)
T ss_dssp EEEETTSEE--EEEC
T ss_pred EEEECcCEE--EEEe
Confidence 999999999 7775
No 20
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-37 Score=326.50 Aligned_cols=296 Identities=23% Similarity=0.319 Sum_probs=231.9
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee-cC-CCCcEEEEEEcCCCCEEEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL-RD-HFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~v~fspdg~~Lasg 84 (689)
.+.+|. .+|++++|+|+ +||+|+.|+.|+|||+... ....+..+ .. |.+.|.+++|+|++++|++|
T Consensus 9 ~~~~h~-~~v~~~~~s~~--~las~~~D~~i~lw~~~~~---------~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~ 76 (330)
T 2hes_X 9 SLKLYK-EKIWSFDFSQG--ILATGSTDRKIKLVSVKYD---------DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAG 76 (330)
T ss_dssp EEECCS-SCEEEEEEETT--EEEEEESSSCEEEEECSSS---------CCEEEEEECTTCCCSCEEEEEECTTSSEEEEE
T ss_pred eeccCC-CceeeeccCCC--EEEEEcCCCEEEEEEecCC---------CeEEEEEEecCCccCCEEEEEECCCCCEEEEE
Confidence 456788 59999999998 9999999999999999751 12444555 34 99999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC----CeEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST----GICT 160 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~----~~~~ 160 (689)
+.|+.|+||++..... ....+.....+.+|...|.+++|+|++++|++++.|+.|++||+.. .+++
T Consensus 77 s~D~~v~iw~~~~~~~----------~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 77 SFDSTVSIWAKEESAD----------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp ETTSCEEEEEC-----------------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred eCCCcEEEEEcccCcC----------ccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999864310 0012356788899999999999999999999999999999999943 3577
Q ss_pred EEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC--cceeeccCcccccCCcccEEEEEEcCC--CCeEEEecCC
Q 040062 161 AVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW--SLAHRTDGHWAKSLGSTFFRRLGWSPC--GHFITTTHGF 236 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~--~~~~~~~~~~~~~~~~~~i~~l~~spd--g~~l~~~~~~ 236 (689)
..+.+|...|.+++|+|++.+|++++.|++|++||..+. +++..+..+... +.++.|+|+ +.+|++++.+
T Consensus 147 ~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~------v~~~~~~~~~~~~~l~s~s~D 220 (330)
T 2hes_X 147 SVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGT------VWSSDFDKTEGVFRLCSGSDD 220 (330)
T ss_dssp EEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC------EEEEEECCSSSSCEEEEEETT
T ss_pred EEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCc------EEEEEecCCCCeeEEEEEeCC
Confidence 888999999999999999999999999999999998765 456666665443 899999999 6678887653
Q ss_pred CCCccccceeecCCc--------eeeeeecC-CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 237 QKPRHSAPVLERGEW--------AATFDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~--------~~~~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
..+++|+.... .....+.+ |...|.+++|++. .
T Consensus 221 ----~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~----------------------------------~ 262 (330)
T 2hes_X 221 ----STVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFN----------------------------------G 262 (330)
T ss_dssp ----SCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTT----------------------------------S
T ss_pred ----CeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCC----------------------------------C
Confidence 45667765432 33344444 8999999999865 4
Q ss_pred EEEEEeCCCcEEEEeCCCCC--ceEEecccCCC-CeEEEEEcc--CCCeEEEEeCCCcEEEEEeec
Q 040062 308 VIAIGSQDRTITVWTTASPR--PLFVAKHFFTQ-SVVDLSWSP--DGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~--~~~~~~~~h~~-~V~~l~~sp--dg~~L~sgs~DG~I~vwd~~~ 368 (689)
+|++++.||.|+|||..+++ .+......|.. .|.+++|+| ++++|++++.||.|++|+++.
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 79999999999999998764 33333345666 899999999 789999999999999999864
No 21
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=9.8e-39 Score=343.22 Aligned_cols=298 Identities=20% Similarity=0.283 Sum_probs=253.5
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|++++|+|++++|++|+.||+|+|||+.+ .+....+..|...|.+++|+|+|++|++|+.
T Consensus 61 ~l~gH~-~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~-----------~~~~~~~~~h~~~v~~~~~s~~g~~las~~~ 128 (380)
T 3iz6_a 61 TLQGHS-GKVYSLDWTPEKNWIVSASQDGRLIVWNALT-----------SQKTHAIKLHCPWVMECAFAPNGQSVACGGL 128 (380)
T ss_dssp EECCCS-SCEEEEEECTTSSCEEEEETTSEEEEEETTT-----------TEEEEEEECCCTTCCCCEECTTSSEEEECCS
T ss_pred cccccc-cEEEEEEEcCCCCEEEEEeCCCeEEEEECCC-----------CccceEEecCCCCEEEEEECCCCCEEEEeeC
Confidence 356788 5999999999999999999999999999987 7788899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEE--
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL-- 163 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~~~l-- 163 (689)
|+.|++|++....... ........+.+|...|.++.|+|++ ..|++|+.|++|++||+.+++.+..+
T Consensus 129 d~~v~iw~~~~~~~~~----------~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 129 DSACSIFNLSSQADRD----------GNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp SSCCEEEECCCCSSCC----------CSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCcEEEEECCCCcccc----------CCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 9999999997642110 0112334567899999999999974 57999999999999999999999888
Q ss_pred ---ecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 164 ---RGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 164 ---~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
.+|...|.+++|++ ++++|++++.|++|++||++ .......+..+... |.+++|+|++++|++++.
T Consensus 199 ~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~------v~~v~~~p~~~~l~s~s~--- 269 (380)
T 3iz6_a 199 EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD------INSVKFFPDGQRFGTGSD--- 269 (380)
T ss_dssp CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC------CCEEEECTTSSEEEEECS---
T ss_pred ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC------eEEEEEecCCCeEEEEcC---
Confidence 67999999999987 78999999999999999998 44666666665443 899999999999999876
Q ss_pred CccccceeecCCceeeeeecCCC-------CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHN-------APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~-------~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
...+++|+.........+..+. ..+.+++|+|++ .+|++
T Consensus 270 -D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------------------------------~~l~~ 315 (380)
T 3iz6_a 270 -DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG---------------------------------RLLFA 315 (380)
T ss_dssp -SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSS---------------------------------SEEEE
T ss_pred -CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCC---------------------------------CEEEE
Confidence 4567899988776655554432 247888898886 89999
Q ss_pred EeCCCcEEEEeCCCCCceEEec---ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 312 GSQDRTITVWTTASPRPLFVAK---HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 312 gs~Dg~I~iwd~~~~~~~~~~~---~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
|+.||.|++||+..++.+..+. ..|...|++++|+|||++|++|+.||+|++|++...
T Consensus 316 g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 316 GYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp ECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 9999999999999988876653 468899999999999999999999999999998764
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=2.7e-37 Score=333.51 Aligned_cols=292 Identities=23% Similarity=0.374 Sum_probs=246.3
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC------------------CcEE
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF------------------GSVN 70 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~------------------~~V~ 70 (689)
+.|. ..|+|++|+|||++||+|+ ++.++||++.+ ++.+..+..|. ..|.
T Consensus 61 ~~h~-~~V~~v~fspdg~~la~g~-~~~v~i~~~~~-----------g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~ 127 (393)
T 1erj_A 61 LDHT-SVVCCVKFSNDGEYLATGC-NKTTQVYRVSD-----------GSLVARLSDDSAANKDPENLNTSSSPSSDLYIR 127 (393)
T ss_dssp EECS-SCCCEEEECTTSSEEEEEC-BSCEEEEETTT-----------CCEEEEECC-----------------CCCCBEE
T ss_pred cCCC-CEEEEEEECCCCCEEEEEc-CCcEEEEEecC-----------CCEEEEecCccccccccccccccccCCCceeEE
Confidence 4688 5999999999999999976 68999999986 45555554443 3499
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIH 150 (689)
Q Consensus 71 ~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~ 150 (689)
+++|+|+|++|++|+.|+.|+|||+.++ +....+.+|...|.+++|+|++.+|++++.|+.|+
T Consensus 128 ~v~~s~dg~~l~s~~~d~~i~iwd~~~~-----------------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~ 190 (393)
T 1erj_A 128 SVCFSPDGKFLATGAEDRLIRIWDIENR-----------------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR 190 (393)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCC-----------------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEE
Confidence 9999999999999999999999999887 67888999999999999999999999999999999
Q ss_pred EEEcCCCeEEEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccc-cCCcccEEEEEEcCCCC
Q 040062 151 IWNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK-SLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 151 vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~i~~l~~spdg~ 228 (689)
+||++++++...+. +...+.+++|+| ++++|++++.|+.|++||++++..+..+...... ......+.+++|+|+|+
T Consensus 191 iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 269 (393)
T 1erj_A 191 IWDLRTGQCSLTLS-IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 269 (393)
T ss_dssp EEETTTTEEEEEEE-CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSS
T ss_pred EEECCCCeeEEEEE-cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCC
Confidence 99999999888887 667899999999 8999999999999999999998877665322111 11234589999999999
Q ss_pred eEEEecCCCCCccccceeecCC------------ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 229 FITTTHGFQKPRHSAPVLERGE------------WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~~~------------~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
+|++++.+ ..+.+|+... ......+.+|...|.+++|++++
T Consensus 270 ~l~s~s~d----~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----------------------- 322 (393)
T 1erj_A 270 SVVSGSLD----RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQND----------------------- 322 (393)
T ss_dssp EEEEEETT----SEEEEEEC---------------CEEEEEECCSSCEEEEEECGGG-----------------------
T ss_pred EEEEEeCC----CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCC-----------------------
Confidence 99998763 4567787543 23455678999999999999886
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEcc------CCCeEEEEeCCCcEEEEEeecc
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP------DGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp------dg~~L~sgs~DG~I~vwd~~~~ 369 (689)
.+|++|+.|+.|++||+.+++++..+. .|...|.+++|++ ++.+|++|+.||+|++|++...
T Consensus 323 ----------~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 323 ----------EYILSGSKDRGVLFWDKKSGNPLLMLQ-GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ----------CEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ----------CEEEEEeCCCeEEEEECCCCeEEEEEC-CCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 799999999999999999999887775 5889999999986 6889999999999999998753
No 23
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=3.4e-37 Score=326.34 Aligned_cols=296 Identities=20% Similarity=0.309 Sum_probs=241.1
Q ss_pred ceeeecCceEEEEEE-----cC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCE
Q 040062 7 SWVRHEGMQIFSIDV-----QP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRY 80 (689)
Q Consensus 7 ~~~~H~g~~I~si~~-----sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~ 80 (689)
.+.+|. ..|++++| ++ ++++|++|+.|++|+|||+..... ....+.....+.+|...|.+++|+|++.+
T Consensus 16 ~l~gH~-~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~----~~~~~~~~~~l~~h~~~V~~~~~~~~~~~ 90 (343)
T 2xzm_R 16 ILEGHS-DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQ----NGYFGIPHKALTGHNHFVSDLALSQENCF 90 (343)
T ss_dssp EEECCS-SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCC----SSBSEEEEEEECCCSSCEEEEEECSSTTE
T ss_pred eeccch-hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCc----ccccccccchhccCCCceEEEEECCCCCE
Confidence 456788 59999999 77 999999999999999999875211 11124567788999999999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
|++|+.|++|++||+.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+... ..
T Consensus 91 l~s~s~D~~v~lwd~~~~-----------------~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~-~~ 152 (343)
T 2xzm_R 91 AISSSWDKTLRLWDLRTG-----------------TTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGE-CK 152 (343)
T ss_dssp EEEEETTSEEEEEETTSS-----------------CEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSC-EE
T ss_pred EEEEcCCCcEEEEECCCC-----------------cEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCC-ce
Confidence 999999999999999887 577888999999999999999999999999999999999743 33
Q ss_pred EEEe---cCCCCeEEEEEccCC----------CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 161 AVLR---GHSSLVKGVAWDPIG----------SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 161 ~~l~---~h~~~V~~l~~spdg----------~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
..+. .|...|.+++|+|++ .+|++++.|++|++||. +......+..+.. .+.+++|+|+|
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~------~v~~~~~s~~g 225 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES------NVNHLSISPNG 225 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS------CEEEEEECTTS
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc------cceEEEECCCC
Confidence 3333 688999999999987 79999999999999994 4555555555533 38999999999
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
++|++++. ...+.+|+............+...|.+++|+|++ .
T Consensus 226 ~~l~sgs~----dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~---------------------------------~ 268 (343)
T 2xzm_R 226 KYIATGGK----DKKLLIWDILNLTYPQREFDAGSTINQIAFNPKL---------------------------------Q 268 (343)
T ss_dssp SEEEEEET----TCEEEEEESSCCSSCSEEEECSSCEEEEEECSSS---------------------------------C
T ss_pred CEEEEEcC----CCeEEEEECCCCcccceeecCCCcEEEEEECCCC---------------------------------C
Confidence 99999876 3567788874333222333456679999999986 5
Q ss_pred EEEEEeCCCcEEEEeCCCCCceE--Eec----------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 308 VIAIGSQDRTITVWTTASPRPLF--VAK----------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~~--~~~----------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
+++ ++.|+.|++||+.+++... .+. ..|...|.+++|+|+|++|++|+.||.|++|++++++
T Consensus 269 ~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g~ 342 (343)
T 2xzm_R 269 WVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETSA 342 (343)
T ss_dssp EEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEEE
T ss_pred EEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEccC
Confidence 665 5568889999998776543 332 1467789999999999999999999999999998753
No 24
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=5.1e-37 Score=321.67 Aligned_cols=304 Identities=22% Similarity=0.280 Sum_probs=253.9
Q ss_pred cceeeeeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 55 TQRLLATLRDHFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
...+..++.+|.+.|++++|+|++ ++|++|+.|++|++|++..... .....+..+.+|...|.+++|
T Consensus 6 ~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~------------~~~~~~~~~~~h~~~v~~~~~ 73 (319)
T 3frx_A 6 VLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ------------KFGVPVRSFKGHSHIVQDCTL 73 (319)
T ss_dssp EEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT------------EEEEEEEEEECCSSCEEEEEE
T ss_pred EEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCc------------cccccceEEeCCcccEEEEEE
Confidence 356778899999999999999965 8999999999999999875321 111457788999999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL 213 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 213 (689)
++++++|++++.|++|++||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||++. ..+..+..+..
T Consensus 74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~--- 149 (319)
T 3frx_A 74 TADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND--- 149 (319)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS---
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC---
Confidence 99999999999999999999999999999999999999999999999999999999999999964 45555555433
Q ss_pred CcccEEEEEEcCC------CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 214 GSTFFRRLGWSPC------GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 214 ~~~~i~~l~~spd------g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
.+..+.|+|. +..+++++. ...+.+|+.........+.+|...|.+++|+|++
T Consensus 150 ---~v~~~~~~~~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g-------------- 208 (319)
T 3frx_A 150 ---WVSQVRVVPNEKADDDSVTIISAGN----DKMVKAWNLNQFQIEADFIGHNSNINTLTASPDG-------------- 208 (319)
T ss_dssp ---CEEEEEECCC------CCEEEEEET----TSCEEEEETTTTEEEEEECCCCSCEEEEEECTTS--------------
T ss_pred ---cEEEEEEccCCCCCCCccEEEEEeC----CCEEEEEECCcchhheeecCCCCcEEEEEEcCCC--------------
Confidence 3889999985 447777765 4567899999888888899999999999999987
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++|++|+.|+.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ .+++|+++
T Consensus 209 -------------------~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~ 266 (319)
T 3frx_A 209 -------------------TLIASAGKDGEIMLWNLAAKKAMYTLSA--QDEVFSLAFSPNRYWLAAATAT-GIKVFSLD 266 (319)
T ss_dssp -------------------SEEEEEETTCEEEEEETTTTEEEEEEEC--CSCEEEEEECSSSSEEEEEETT-EEEEEEET
T ss_pred -------------------CEEEEEeCCCeEEEEECCCCcEEEEecC--CCcEEEEEEcCCCCEEEEEcCC-CcEEEEeC
Confidence 8999999999999999999988887763 5689999999999999988855 59999998
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
...+...+.... ......+...+.+++|||||++|++++.||+| +++...
T Consensus 267 ~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i--~vWd~~ 316 (319)
T 3frx_A 267 PQYLVDDLRPEF-----AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVI--RVWQVM 316 (319)
T ss_dssp TEEEEEEECCCC-----TTCCGGGCCCEEEEEECTTSSEEEEEETTSCE--EEEEEE
T ss_pred cCeeeeccCccc-----cccccCcCcceeEEEECCCCCEEEEeecCceE--EEEEEe
Confidence 776554332110 01112345578999999999999999999999 766543
No 25
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=5.9e-37 Score=326.14 Aligned_cols=288 Identities=19% Similarity=0.240 Sum_probs=252.8
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+...++.+|.+.|++++|+|++++|++|+.||+|+|||..++ +....+..|...|.+++|+|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~-----------------~~~~~~~~~~~~v~~~~~sp 116 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTT-----------------NKEHAVTMPCTWVMACAYAP 116 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----------------CEEEEEECSSSCCCEEEECT
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------------CcceEEecCCCCEEEEEECC
Confidence 3567788999999999999999999999999999999998876 56677888999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC------eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 136 DDSILASGSLDNTIHIWNMSTG------ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~------~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
++.+|++++.|+.+++|++... .....+..|...|.+++|+|++.+|++++.|++|++||+++++.+..+..+.
T Consensus 117 ~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~ 196 (354)
T 2pbi_B 117 SGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHG 196 (354)
T ss_dssp TSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS
T ss_pred CCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCC
Confidence 9999999999999999998643 3456677899999999999999999999999999999999999988887765
Q ss_pred cccCCcccEEEEEEcC--CCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSP--CGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 210 ~~~~~~~~i~~l~~sp--dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
.. +.++.|+| ++++|++++. ...+.+|+.........+.+|...|.+++|+|++
T Consensus 197 ~~------v~~~~~~~~~~g~~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~-------------- 252 (354)
T 2pbi_B 197 AD------VLCLDLAPSETGNTFVSGGC----DKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSG-------------- 252 (354)
T ss_dssp SC------EEEEEECCCSSCCEEEEEET----TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--------------
T ss_pred CC------eEEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCC--------------
Confidence 44 78888887 5788988876 4567899988888888899999999999999986
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc-CCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF-FTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+|++|+.|+.|++||++.++.+..+... +...+.+++|+|+|++|++++.|+.|++||+
T Consensus 253 -------------------~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~ 313 (354)
T 2pbi_B 253 -------------------DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDV 313 (354)
T ss_dssp -------------------SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred -------------------CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEEC
Confidence 79999999999999999988776655432 2347899999999999999999999999999
Q ss_pred eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 367 EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 367 ~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.+++... .+..|.+.|.+++|+|||.+|++++.||+|
T Consensus 314 ~~~~~~~-------------~l~~h~~~v~~l~~spdg~~l~sgs~D~~v 350 (354)
T 2pbi_B 314 LKGSRVS-------------ILFGHENRVSTLRVSPDGTAFCSGSWDHTL 350 (354)
T ss_dssp TTCSEEE-------------EECCCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred CCCceEE-------------EEECCCCcEEEEEECCCCCEEEEEcCCCCE
Confidence 8776542 334588899999999999999999999998
No 26
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=6.8e-38 Score=340.02 Aligned_cols=331 Identities=13% Similarity=0.092 Sum_probs=269.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.+++++|+|++++|++++.||.|++||+.. .+....+..| ..+....|++++++|++++.|+.|++||
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~-----------~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTII-----------RDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCS-----------EETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecc-----------cceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 345899999999999999999999999986 4555555555 4555667899999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVA 174 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 174 (689)
+.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.+..+.+|...|.+++
T Consensus 126 ~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~ 188 (420)
T 3vl1_A 126 SNFN-----------------LQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 188 (420)
T ss_dssp TTSC-----------------EEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEE
T ss_pred CCCc-----------------ceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEE
Confidence 9876 56677789999999999999999999999999999999999999999999999999999
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC------------------CcccEEEEEEcCCCCeEEEecCC
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL------------------GSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~------------------~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
|+|++++|++++.|++|++||+++++....+..+..... ....+.+++|+|++++|++++.
T Consensus 189 ~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 189 IIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp EETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred EcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 999999999999999999999999988887765432111 1123455667899999999876
Q ss_pred CCCccccceeecCCceeeeeec-CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc-EEEEEeC
Q 040062 237 QKPRHSAPVLERGEWAATFDFL-GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN-VIAIGSQ 314 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~-~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~lasgs~ 314 (689)
...+.+|+.........+. .|...+.+++|+|++ . +|++|+.
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------------~~~l~~g~~ 311 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNN---------------------------------ANYIYAGYE 311 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSC---------------------------------TTEEEEEET
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCC---------------------------------CCEEEEEeC
Confidence 3457789887776665554 588999999999986 5 9999999
Q ss_pred CCcEEEEeCCCCCc-eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC
Q 040062 315 DRTITVWTTASPRP-LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG 393 (689)
Q Consensus 315 Dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~ 393 (689)
||.|++||+++++. +..+...|...|.++.| +++++|++++.||.|++|++...+....+.... .......|.+
T Consensus 312 dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~----~~~~~~~~~~ 386 (420)
T 3vl1_A 312 NGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFE----TPTFLVSNDD 386 (420)
T ss_dssp TSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT----SCEEECCSSC
T ss_pred CCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceecc----CccEEccCCc
Confidence 99999999998754 66666657788888855 578999999999999999998743322111000 0023445677
Q ss_pred ceeeeecCchhh---hhHhhccccce
Q 040062 394 RLANLAETPAQL---LLEAASAKETT 416 (689)
Q Consensus 394 ~I~~l~~Spdg~---~Las~s~DG~v 416 (689)
.|..++|+||+. .|++.+.+|.+
T Consensus 387 ~v~~~~~s~~~~~~g~l~a~g~~g~~ 412 (420)
T 3vl1_A 387 AVSQFCYVSDDESNGEVLEVGKNNFC 412 (420)
T ss_dssp CCCEEEEECCSSSSCEEEEEETTTEE
T ss_pred ceEEEEEccCCCCcceEEEEcCCceE
Confidence 899999999999 67777778877
No 27
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=322.10 Aligned_cols=305 Identities=23% Similarity=0.366 Sum_probs=246.5
Q ss_pred ceeeeeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEE-EEEecCCCCEEEEEE
Q 040062 56 QRLLATLRDHFG-SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVA-MTLRGHTADVVDLNW 133 (689)
Q Consensus 56 ~~~~~~l~~h~~-~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~-~~l~~h~~~V~~l~~ 133 (689)
..++.++.+|.+ .|.+++|+|+|++||+|+.|+.|+|||+..+. +... ....+|...|.+++|
T Consensus 5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~---------------~~~~~~~~~~h~~~v~~~~~ 69 (345)
T 3fm0_A 5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS---------------WICKSVLSEGHQRTVRKVAW 69 (345)
T ss_dssp EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTE---------------EEEEEEECSSCSSCEEEEEE
T ss_pred EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc---------------ceeeeeeccccCCcEEEEEE
Confidence 567888999988 99999999999999999999999999998752 1112 233689999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCC--eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc---eeeccCc
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTG--ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL---AHRTDGH 208 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~---~~~~~~~ 208 (689)
+|++++|++++.|+.|++||+.++ +++..+.+|...|.+++|+|++++|++++.|++|++||+++... +..+..+
T Consensus 70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 999999999999999999999876 46788999999999999999999999999999999999987643 3344444
Q ss_pred ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc--eeeeeecCCCCCEEEEEEcCCcccccccccccccc
Q 040062 209 WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW--AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286 (689)
Q Consensus 209 ~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~ 286 (689)
. ..+.+++|+|++.+|++++.+ ..+.+|+.... .....+.+|...|.+++|+|++
T Consensus 150 ~------~~v~~~~~~p~~~~l~s~s~d----~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g------------- 206 (345)
T 3fm0_A 150 T------QDVKHVVWHPSQELLASASYD----DTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSG------------- 206 (345)
T ss_dssp C------SCEEEEEECSSSSCEEEEETT----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTS-------------
T ss_pred C------CCeEEEEECCCCCEEEEEeCC----CcEEEEEecCCCEEEEEEecCCCCceEEEEECCCC-------------
Confidence 3 338999999999999998764 45667875443 4556788999999999999987
Q ss_pred ccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC---------------CceEEecccCCCCeEEEEEccCCCe
Q 040062 287 APVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP---------------RPLFVAKHFFTQSVVDLSWSPDGYS 351 (689)
Q Consensus 287 ~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~---------------~~~~~~~~~h~~~V~~l~~spdg~~ 351 (689)
++|++|+.|+.|+|||.... +++..+...|...|.+++|+|++.+
T Consensus 207 --------------------~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 266 (345)
T 3fm0_A 207 --------------------QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGA 266 (345)
T ss_dssp --------------------SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCC
T ss_pred --------------------CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCE
Confidence 89999999999999996432 1233444457889999999999999
Q ss_pred EEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchh-hhhHhhccccceeeeeeecc
Q 040062 352 LFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ-LLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 352 L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg-~~Las~s~DG~v~~~~~~~~ 424 (689)
|++++.|+.|++|+.+.+......... +.......|.+.|++++|+|++ .+|++++.||+| +++...
T Consensus 267 l~s~~~d~~i~vw~~~~~~~~~~~~~~----~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v--~~W~~~ 334 (345)
T 3fm0_A 267 LATACGDDAIRVFQEDPNSDPQQPTFS----LTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEV--AFWKYQ 334 (345)
T ss_dssp EEEEETTSCEEEEEECTTSCTTSCCEE----EEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCE--EEEEEC
T ss_pred EEEEeCCCeEEEEEeCCCCCcceeeEE----EEeeecccccCcEeEeEEeCCCceEEEEcCCCCcE--EEEEec
Confidence 999999999999998765321110000 0002234688899999999998 489999999999 777643
No 28
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=9.8e-37 Score=319.40 Aligned_cols=322 Identities=12% Similarity=0.120 Sum_probs=269.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.+|.+++|+|||++++++..++.+.+|.... ........+|.+.|++++|+|++++|++++ ||.|++|
T Consensus 10 ~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw 77 (337)
T 1gxr_A 10 KPAYSFHVTADGQMQPVPFPPDALIGPGIPR-----------HARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVW 77 (337)
T ss_dssp EECCEEEECSSSCEEECCCCTTSSSSTTCCS-----------EEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEE
T ss_pred CceeEEEECCCCCEEEeecCCCcEeccccCC-----------ccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEE
Confidence 5899999999999999998877777776543 333334447999999999999999999999 9999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe--EEEEEecCCCCeE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI--CTAVLRGHSSLVK 171 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~--~~~~l~~h~~~V~ 171 (689)
++.++..... ........|...|.+++|+|++++|++++.|+.|++||+.+++ ....+..|...|.
T Consensus 78 ~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~ 145 (337)
T 1gxr_A 78 DISHPGNKSP------------VSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY 145 (337)
T ss_dssp ETTSTTCCSC------------SEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE
T ss_pred ECCCCCceee------------eecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE
Confidence 9987632111 1222233789999999999999999999999999999999877 6677888999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
+++|+|++++|++++.|+.|++||+++++....+..+.. .+.+++|+|+++++++++. ...+.+|+....
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~------~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~ 215 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD------GASCIDISNDGTKLWTGGL----DNTVRSWDLREG 215 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS------CEEEEEECTTSSEEEEEET----TSEEEEEETTTT
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC------ceEEEEECCCCCEEEEEec----CCcEEEEECCCC
Confidence 999999999999999999999999999988888776543 3899999999999999875 356778988776
Q ss_pred eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE
Q 040062 252 AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV 331 (689)
Q Consensus 252 ~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~ 331 (689)
.....+ .|...+.+++|+|++ ++|++++.|+.|++||+.+++...
T Consensus 216 ~~~~~~-~~~~~v~~~~~s~~~---------------------------------~~l~~~~~~~~i~~~~~~~~~~~~- 260 (337)
T 1gxr_A 216 RQLQQH-DFTSQIFSLGYCPTG---------------------------------EWLAVGMESSNVEVLHVNKPDKYQ- 260 (337)
T ss_dssp EEEEEE-ECSSCEEEEEECTTS---------------------------------SEEEEEETTSCEEEEETTSSCEEE-
T ss_pred ceEeee-cCCCceEEEEECCCC---------------------------------CEEEEEcCCCcEEEEECCCCCeEE-
Confidence 665554 478889999999886 899999999999999999887543
Q ss_pred ecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 332 AKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 332 ~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
+ ..|...|.+++|+|++++|++++.||.|++|++++++.... ..|...+.+++|+|++.+|++++
T Consensus 261 ~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~--------------~~~~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 261 L-HLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--------------SKESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp E-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE--------------EECSSCEEEEEECTTSCEEEEEE
T ss_pred E-cCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE--------------ecCCCcEEEEEECCCCCEEEEec
Confidence 2 35788999999999999999999999999999988765421 12556799999999999999999
Q ss_pred cccceeeeee
Q 040062 412 AKETTTKKVV 421 (689)
Q Consensus 412 ~DG~v~~~~~ 421 (689)
.||.+ +++
T Consensus 326 ~dg~i--~iw 333 (337)
T 1gxr_A 326 GDKKA--TVY 333 (337)
T ss_dssp TTSCE--EEE
T ss_pred CCCeE--EEE
Confidence 99998 444
No 29
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.8e-38 Score=337.82 Aligned_cols=303 Identities=19% Similarity=0.249 Sum_probs=255.5
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.....++.+|.+.|++++|+|++++|++|+.|++|+|||+.++ +....+..|...|.+++|+|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-----------------~~~~~~~~h~~~v~~~~~s~ 118 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-----------------QKTHAIKLHCPWVMECAFAP 118 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----------------EEEEEEECCCTTCCCCEECT
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------------ccceEEecCCCCEEEEEECC
Confidence 6778899999999999999999999999999999999999887 67888999999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCe-------EEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 136 DDSILASGSLDNTIHIWNMSTGI-------CTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~-------~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
++++|++++.|+.|++||+.+.. ....+.+|...|.++.|.|++ ..|++++.|++|++||+++++.+..+..
T Consensus 119 ~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~ 198 (380)
T 3iz6_a 119 NGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGS 198 (380)
T ss_dssp TSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECC
T ss_pred CCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeec
Confidence 99999999999999999986532 345677899999999999974 5799999999999999999988776633
Q ss_pred cccccCCcccEEEEEEcC-CCCeEEEecCCCCCccccceeecC-CceeeeeecCCCCCEEEEEEcCCccccccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSP-CGHFITTTHGFQKPRHSAPVLERG-EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~sp-dg~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~ 285 (689)
.... .....+.++.|++ +++++++++. ...+.+|+.. .......+.+|.+.|.+++|+|++
T Consensus 199 ~~~~-~h~~~v~~~~~~~~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~------------ 261 (380)
T 3iz6_a 199 EFPS-GHTADVLSLSINSLNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDG------------ 261 (380)
T ss_dssp CSSS-SCCSCEEEEEECSSSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTS------------
T ss_pred ccCC-CCccCeEEEEeecCCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcCCCeEEEEEecCC------------
Confidence 2211 1234588999977 7888888876 4567799876 345566788999999999999987
Q ss_pred cccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccC------CCCeEEEEEccCCCeEEEEeCCC
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFF------TQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h------~~~V~~l~~spdg~~L~sgs~DG 359 (689)
.+|++|+.|+.|++||+++++.+..+.... ...|++++|+|+|++|++|+.||
T Consensus 262 ---------------------~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg 320 (380)
T 3iz6_a 262 ---------------------QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNG 320 (380)
T ss_dssp ---------------------SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTS
T ss_pred ---------------------CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCC
Confidence 899999999999999999998887765421 23489999999999999999999
Q ss_pred cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 360 TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 360 ~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.|++||+..++....+. .....|.+.|.+++|+|||.+|++|+.||+| +++...
T Consensus 321 ~i~vwd~~~~~~~~~~~---------~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i--~iW~~~ 374 (380)
T 3iz6_a 321 DCYVWDTLLAEMVLNLG---------TLQNSHEGRISCLGLSSDGSALCTGSWDKNL--KIWAFS 374 (380)
T ss_dssp CEEEEETTTCCEEEEEC---------CSCSSCCCCCCEEEECSSSSEEEEECTTSCE--EEEECC
T ss_pred CEEEEECCCCceEEEEe---------cccCCCCCceEEEEECCCCCEEEEeeCCCCE--EEEecC
Confidence 99999998777654332 2234688899999999999999999999999 777543
No 30
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=3.6e-37 Score=328.18 Aligned_cols=321 Identities=15% Similarity=0.194 Sum_probs=231.8
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC------CCeE
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD------DQVI 90 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~------Dg~I 90 (689)
..+++.+++.++.+ +.+.....|++.. .....|.+.|++|+|+|||++||+|+. |+.|
T Consensus 9 sg~d~g~~~~~~~~-~g~~~~~~w~~p~---------------~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v 72 (357)
T 4g56_B 9 SGVDLGTENLYFQS-NGSSKGSAWGRPV---------------TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSI 72 (357)
T ss_dssp -----------------------------------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEE
T ss_pred cCCCCCccceEEec-CCCccccccCCCC---------------CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeE
Confidence 45566666655444 4457889999764 122469999999999999999999997 7789
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE----EEecC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA----VLRGH 166 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~----~l~~h 166 (689)
++|+..++.... .......+|...|.+++|+|++. +++++.|+.|+|||+.+++... ...+|
T Consensus 73 ~~~~~~~~~~~~-------------~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h 138 (357)
T 4g56_B 73 WVFKDPEGAPNE-------------SLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEH 138 (357)
T ss_dssp EEESSCC---CG-------------GGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCC
T ss_pred EEEECCCCCcce-------------eEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCC
Confidence 999887663221 12233456889999999999875 5567889999999998876543 34579
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC-eEEEecCCCCCccccce
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH-FITTTHGFQKPRHSAPV 245 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~l~~~~~~~~~~~~~~i 245 (689)
...|.+++|+|++++|++++.|++|++||+++++.+..+..+... +.+++|++++. ++++++. ...+.+
T Consensus 139 ~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~------v~~v~~s~~~~~~~~s~~~----dg~v~~ 208 (357)
T 4g56_B 139 DDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE------VNCVAACPGKDTIFLSCGE----DGRILL 208 (357)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC------EEEEEECTTCSSCEEEEET----TSCEEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC------EEEEEEccCCCceeeeecc----CCceEE
Confidence 999999999999999999999999999999999999888776544 89999999986 5566554 345778
Q ss_pred eecCCceee--eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 246 LERGEWAAT--FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 246 ~~~~~~~~~--~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
|+....... ..+..|...+.+++|+|++ +.+|++|+.|+.|++||+
T Consensus 209 wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~--------------------------------~~~la~g~~d~~i~~wd~ 256 (357)
T 4g56_B 209 WDTRKPKPATRIDFCASDTIPTSVTWHPEK--------------------------------DDTFACGDETGNVSLVNI 256 (357)
T ss_dssp CCTTSSSCBCBCCCTTCCSCEEEEEECTTS--------------------------------TTEEEEEESSSCEEEEES
T ss_pred EECCCCceeeeeeeccccccccchhhhhcc--------------------------------cceEEEeecccceeEEEC
Confidence 887655443 3455678889999999874 378999999999999999
Q ss_pred CCCCceEEecccCCCCeEEEEEccCC-CeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDG-YSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg-~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
++++.+..+. .|...|++++|+|++ ++|++++.||+|+|||++++++... -.|.+.|++++|||
T Consensus 257 ~~~~~~~~~~-~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~--------------~~H~~~V~~vafsP 321 (357)
T 4g56_B 257 KNPDSAQTSA-VHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRD--------------LSHRDFVTGVAWSP 321 (357)
T ss_dssp SCGGGCEEEC-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEE--------------CCCSSCEEEEEECS
T ss_pred CCCcEeEEEe-ccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEE--------------CCCCCCEEEEEEeC
Confidence 9999888775 578899999999987 5799999999999999998876532 24788999999998
Q ss_pred -hhhhhHhhccccceeeeeeecccc
Q 040062 403 -AQLLLEAASAKETTTKKVVSDVQA 426 (689)
Q Consensus 403 -dg~~Las~s~DG~v~~~~~~~~~~ 426 (689)
|+.+|++++.||+| +++..+..
T Consensus 322 ~d~~~l~s~s~Dg~v--~iW~~~~~ 344 (357)
T 4g56_B 322 LDHSKFTTVGWDHKV--LHHHLPSE 344 (357)
T ss_dssp SSTTEEEEEETTSCE--EEEECC--
T ss_pred CCCCEEEEEcCCCeE--EEEECCCC
Confidence 89999999999999 77765543
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-35 Score=313.18 Aligned_cols=297 Identities=15% Similarity=0.219 Sum_probs=258.7
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|++++|+|++++|++|+.||.|+|||+.+ .+.+..+.+|.+.|.+++|+|++++|++++.
T Consensus 27 ~l~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~ 94 (369)
T 3zwl_B 27 KLTGHE-RPLTQVKYNKEGDLLFSCSKDSSASVWYSLN-----------GERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94 (369)
T ss_dssp EEECCS-SCEEEEEECTTSCEEEEEESSSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEEee-ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-----------chhhhhhhhcCCcEEEEEEcCCCCEEEEEeC
Confidence 456788 5999999999999999999999999999987 7888899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCe---
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-----NTIHIWNMSTGI--- 158 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-----g~I~vwd~~~~~--- 158 (689)
||.|++||+.++ +....+. |...|.+++|+|++.+|++++.+ +.|++||+....
T Consensus 95 dg~i~iwd~~~~-----------------~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~ 156 (369)
T 3zwl_B 95 DYSIKLWDVSNG-----------------QCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATH 156 (369)
T ss_dssp TTEEEEEETTTC-----------------CEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTC
T ss_pred CCeEEEEECCCC-----------------cEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccce
Confidence 999999999887 4556666 88899999999999999999999 999999987643
Q ss_pred --------EEEEEecCCC--CeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 159 --------CTAVLRGHSS--LVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 159 --------~~~~l~~h~~--~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
.+..+..|.. .+.+++|+|++++|++++.||.|++||+++ ......+..+.. .+.+++|+|++
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~v~~~~~~~~~ 230 (369)
T 3zwl_B 157 ELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK------SISDMQFSPDL 230 (369)
T ss_dssp CEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS------CEEEEEECTTS
T ss_pred eecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC------ceeEEEECCCC
Confidence 3445556666 999999999999999999999999999998 677776665543 38999999999
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
.+|++++. ...+.+|+.........+. +...+..+.|+|++ .
T Consensus 231 ~~l~~~~~----d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~---------------------------------~ 272 (369)
T 3zwl_B 231 TYFITSSR----DTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLK---------------------------------E 272 (369)
T ss_dssp SEEEEEET----TSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSS---------------------------------S
T ss_pred CEEEEecC----CceEEEEECCCCceeeeec-CCCCceeEEecCCC---------------------------------c
Confidence 99999876 3467789888777666665 78899999999987 7
Q ss_pred EEEEEeCCC--------------cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 308 VIAIGSQDR--------------TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 308 ~lasgs~Dg--------------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
++++++.++ .+++||+.+++.+..+. .|...|.+++|+|++++|++++.||.|++|+++.+.+..
T Consensus 273 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~ 351 (369)
T 3zwl_B 273 FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ-GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYFDF 351 (369)
T ss_dssp EEEEEECCC-------------CEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHHTC
T ss_pred eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee-cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccchh
Confidence 888888887 89999999999888775 578899999999999999999999999999999887766
Q ss_pred ccChH
Q 040062 374 RLSDA 378 (689)
Q Consensus 374 ~l~~~ 378 (689)
.+...
T Consensus 352 ~~~~~ 356 (369)
T 3zwl_B 352 KYDVE 356 (369)
T ss_dssp CCHHH
T ss_pred HHHHH
Confidence 55443
No 32
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.6e-36 Score=357.42 Aligned_cols=376 Identities=11% Similarity=0.099 Sum_probs=273.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
..++|. ..|++++|+|++++||+|+.||.|+||+... .+....+ .|...|.+++|+| |++|++++.
T Consensus 12 ~~~gh~-~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~-----------~~~~~~~-~~~~~V~~l~fsp-g~~L~S~s~ 77 (902)
T 2oaj_A 12 NKYGMS-SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQ-----------VEVVIKL-EDRSAIKEMRFVK-GIYLVVINA 77 (902)
T ss_dssp EEEECS-SCEEEEEEETTTTEEEEEETTSEEEEECSTT-----------CEEEEEC-SSCCCEEEEEEET-TTEEEEEET
T ss_pred cccCCC-CCcEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------cEEEEEc-CCCCCEEEEEEcC-CCEEEEEEC
Confidence 345787 5999999999999999999999999999875 4444444 4888999999999 889999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE------
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT------ 160 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~------ 160 (689)
|+.|+|||+.++ +.+..+. |...|++++|+|++++|++|+.||.|++||+.++++.
T Consensus 78 D~~v~lWd~~~~-----------------~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~ 139 (902)
T 2oaj_A 78 KDTVYVLSLYSQ-----------------KVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDN 139 (902)
T ss_dssp TCEEEEEETTTC-----------------SEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECC
T ss_pred cCeEEEEECCCC-----------------cEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecc
Confidence 999999999887 4555555 6788999999999999999999999999999988764
Q ss_pred -----EEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccc------------cCCcccEEEEE
Q 040062 161 -----AVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK------------SLGSTFFRRLG 222 (689)
Q Consensus 161 -----~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~------------~~~~~~i~~l~ 222 (689)
..+.+|.+.|.+++|+|+ +.+|++++.|+.| +||+++++....+..+... ......+.+++
T Consensus 140 ~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~ 218 (902)
T 2oaj_A 140 LQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSL 218 (902)
T ss_dssp HHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEE
T ss_pred ccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEE
Confidence 123568999999999996 5789999999999 9999999888777654110 01124599999
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeee--e---cC-------------CCCCEEEEEEc----CCccc-cccc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFD--F---LG-------------HNAPIIVVKFN----HSMFR-RNSA 279 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~--l---~~-------------h~~~v~~v~fs----p~~~~-~~~~ 279 (689)
|+|+|++|++++.+ ..+.+|+..+...... + .. |...|..++|+ |++.. +...
T Consensus 219 fspdg~~lasgs~D----g~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg 294 (902)
T 2oaj_A 219 YHPNSLHIITIHED----NSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISH 294 (902)
T ss_dssp ECTTSSEEEEEETT----CCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEE
T ss_pred EcCCCCEEEEEECC----CeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeC
Confidence 99999999999774 4677888766544321 1 11 34578888884 33111 1100
Q ss_pred ccc------c--------------------------------c------------------------c-----------c
Q 040062 280 SSQ------E--------------------------------V------------------------K-----------A 286 (689)
Q Consensus 280 ~~~------~--------------------------------~------------------------~-----------~ 286 (689)
... . . . .
T Consensus 295 ~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 295 KSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp ECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 000 0 0 0 0
Q ss_pred ccccccC--Cccc---------------------------------------------------ccCccCCCCcEEEEEe
Q 040062 287 APVGWTN--GTSK---------------------------------------------------IGGKESQPYNVIAIGS 313 (689)
Q Consensus 287 ~~~~~~~--~~~~---------------------------------------------------~~~~~s~~~~~lasgs 313 (689)
....|.. +... ....+++++++|++|+
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs 454 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH 454 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec
Confidence 0000110 0000 0012356789999999
Q ss_pred CCCcEEEEeCCCCCce----EEec------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHH-
Q 040062 314 QDRTITVWTTASPRPL----FVAK------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDE- 382 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~----~~~~------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~- 382 (689)
.|++|++||+.++... .... ..|...|.+++|+|||++||+|+.||+|+||++.+++............
T Consensus 455 ~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~ 534 (902)
T 2oaj_A 455 SNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDL 534 (902)
T ss_dssp TTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC------------
T ss_pred CCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCccc
Confidence 9999999999887431 1111 1678899999999999999999999999999999874311000000000
Q ss_pred -------------------------------HHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 383 -------------------------------LKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 383 -------------------------------~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.....+..|.+.|++++||||| +||+|+.||+| +++.
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv--~lwd 602 (902)
T 2oaj_A 535 EMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSL--MLID 602 (902)
T ss_dssp ---CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEE--EEEE
T ss_pred ceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcE--EEEE
Confidence 0012334588899999999999 99999999999 7765
No 33
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.5e-35 Score=308.70 Aligned_cols=288 Identities=16% Similarity=0.264 Sum_probs=249.5
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--CCCCcEEEEEEcCCCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--DHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fspdg~~Lasgs 85 (689)
...|. ..|++++|+|++++|++++ ||.|+|||+..... ...+..+. .|...|.+++|+|++++|++++
T Consensus 47 ~~~h~-~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 116 (337)
T 1gxr_A 47 TLNHG-EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--------KSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116 (337)
T ss_dssp EECCS-SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--------CSCSEEEECSCTTSBEEEEEECTTSSEEEEEE
T ss_pred eccCC-CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--------eeeeecccccCCCCcEEEEEEcCCCCEEEEEc
Confidence 45677 6999999999999999999 99999999986211 12223333 7999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|+.|++||+.++.. .....+..|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 117 ~d~~i~~~d~~~~~~---------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~ 181 (337)
T 1gxr_A 117 EASTLSIWDLAAPTP---------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG 181 (337)
T ss_dssp SSSEEEEEECCCC-----------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCCcEEEEECCCCCc---------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec
Confidence 999999999987621 36677888999999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
|...|.+++|+|++++|++++.|+.|++||+++++....+... ..+.+++|+|++++++++..+ ..+.+
T Consensus 182 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~-------~~v~~~~~s~~~~~l~~~~~~----~~i~~ 250 (337)
T 1gxr_A 182 HTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-------SQIFSLGYCPTGEWLAVGMES----SNVEV 250 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-------SCEEEEEECTTSSEEEEEETT----SCEEE
T ss_pred ccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC-------CceEEEEECCCCCEEEEEcCC----CcEEE
Confidence 9999999999999999999999999999999998877765422 238999999999999998753 45678
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
|+...... ..+..|...+..++|+|++ ++|++++.||.|++||+.+
T Consensus 251 ~~~~~~~~-~~~~~~~~~v~~~~~~~~~---------------------------------~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 251 LHVNKPDK-YQLHLHESCVLSLKFAYCG---------------------------------KWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp EETTSSCE-EEECCCSSCEEEEEECTTS---------------------------------SEEEEEETTSEEEEEETTT
T ss_pred EECCCCCe-EEEcCCccceeEEEECCCC---------------------------------CEEEEecCCCcEEEEECCC
Confidence 88766543 4677899999999999986 7999999999999999999
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++.+... .|...|.+++|+|++++|++++.||.|++|++.
T Consensus 297 ~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 297 GASIFQS--KESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp CCEEEEE--ECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CeEEEEe--cCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9887544 368889999999999999999999999999973
No 34
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.5e-35 Score=309.65 Aligned_cols=295 Identities=22% Similarity=0.296 Sum_probs=250.6
Q ss_pred ceeeecCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 7 SWVRHEGMQIFSIDVQPG-ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spd-g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
.+.+|. ..|++|+|+|+ +++||||+.|++|+|||+..... ........+.+|...|.+++|+|++++|++++
T Consensus 33 tL~GH~-~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~ 105 (340)
T 4aow_A 33 TLKGHN-GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------NYGIPQRALRGHSHFVSDVVISSDGQFALSGS 105 (340)
T ss_dssp EECCCS-SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------CSEEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EECCcc-CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------ccceeeEEEeCCCCCEEEEEECCCCCEEEEEc
Confidence 356799 59999999998 68999999999999999975221 12456778899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE-EEEe
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT-AVLR 164 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~-~~l~ 164 (689)
.|+.|++|+.... ........+...+..+.+++++.+|++++.|+.+++||+...... ..+.
T Consensus 106 ~d~~i~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~ 168 (340)
T 4aow_A 106 WDGTLRLWDLTTG-----------------TTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDE 168 (340)
T ss_dssp TTSEEEEEETTTT-----------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred ccccceEEeeccc-----------------ceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEec
Confidence 9999999999876 667777788899999999999999999999999999999776543 3456
Q ss_pred cCCCCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 GHSSLVKGVAWDPIG--SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 ~h~~~V~~l~~spdg--~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+|...+..++|++++ .++++++.|+.|++||+++++....+..+... |.+++|+|++++|++++. ...
T Consensus 169 ~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~------v~~~~~s~~~~~l~s~s~----Dg~ 238 (340)
T 4aow_A 169 SHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGY------LNTVTVSPDGSLCASGGK----DGQ 238 (340)
T ss_dssp SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSC------EEEEEECTTSSEEEEEET----TCE
T ss_pred cccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCc------EEEEEECCCCCEEEEEeC----CCe
Confidence 789999999999865 57899999999999999999988888766443 899999999999999876 356
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
+.+|+.........+.. ...+..+.|+|++ .+++++.|+.|++||
T Consensus 239 i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~----------------------------------~~~~~~~d~~i~iwd 283 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDG-GDIINALCFSPNR----------------------------------YWLCAATGPSIKIWD 283 (340)
T ss_dssp EEEEETTTTEEEEEEEC-SSCEEEEEECSSS----------------------------------SEEEEEETTEEEEEE
T ss_pred EEEEEeccCceeeeecC-CceEEeeecCCCC----------------------------------ceeeccCCCEEEEEE
Confidence 77999888877776654 4689999999884 566777899999999
Q ss_pred CCCCCceEEec--------ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 323 TASPRPLFVAK--------HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 323 ~~~~~~~~~~~--------~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
++.+..+..+. ..|...|++++|+|||++|++|+.||.|+|||+++|+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 284 LEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred CCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 99876665543 2477899999999999999999999999999999874
No 35
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.6e-36 Score=313.49 Aligned_cols=296 Identities=21% Similarity=0.322 Sum_probs=233.4
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE-ec-CCCCEEEEEE
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL-RG-HTADVVDLNW 133 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l-~~-h~~~V~~l~~ 133 (689)
.+++.++.+|.+.|.+++|+++ +|++|+.|+.|++||+..+.. .....+ .+ |...|.+++|
T Consensus 4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~---------------~~~~~~~~~~h~~~v~~v~~ 66 (330)
T 2hes_X 4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDF---------------TLIDVLDETAHKKAIRSVAW 66 (330)
T ss_dssp CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCC---------------EEEEEECTTCCCSCEEEEEE
T ss_pred cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCe---------------EEEEEEecCCccCCEEEEEE
Confidence 5678889999999999999987 999999999999999976421 344455 34 9999999999
Q ss_pred cCCCCEEEEEeCCCeEEEEEcC-------CCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC----cce
Q 040062 134 SPDDSILASGSLDNTIHIWNMS-------TGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW----SLA 202 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~-------~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~----~~~ 202 (689)
+|++++|++++.|+.|++||+. ..+.+..+.+|...|.+++|+|++++|++++.|++|++||++.. +++
T Consensus 67 sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~ 146 (330)
T 2hes_X 67 RPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECI 146 (330)
T ss_dssp CTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEE
Confidence 9999999999999999999985 34567888999999999999999999999999999999999532 344
Q ss_pred eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC--ceeeeeecCCCCCEEEEEEcCCcccccccc
Q 040062 203 HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE--WAATFDFLGHNAPIIVVKFNHSMFRRNSAS 280 (689)
Q Consensus 203 ~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~--~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~ 280 (689)
..+..+.. .+.++.|+|++.+|++++.+ ..+++|+... +.....+.+|...|.++.|+|+.
T Consensus 147 ~~~~~h~~------~v~~v~~~p~~~~l~s~s~D----~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~------- 209 (330)
T 2hes_X 147 SVLQEHSQ------DVKHVIWHPSEALLASSSYD----DTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE------- 209 (330)
T ss_dssp EEECCCSS------CEEEEEECSSSSEEEEEETT----SCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS-------
T ss_pred EEeccCCC------ceEEEEECCCCCEEEEEcCC----CeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC-------
Confidence 45555433 39999999999999998764 4667887543 35667788999999999999984
Q ss_pred ccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC--------CceEEecccCCCCeEEEEEccCCCeE
Q 040062 281 SQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP--------RPLFVAKHFFTQSVVDLSWSPDGYSL 352 (689)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~--------~~~~~~~~~h~~~V~~l~~spdg~~L 352 (689)
.+.+|++|+.|+.|++||+..+ .....+...|...|.+++|++++ +|
T Consensus 210 ------------------------~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l 264 (330)
T 2hes_X 210 ------------------------GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LI 264 (330)
T ss_dssp ------------------------SSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CE
T ss_pred ------------------------CeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EE
Confidence 2368999999999999998764 23333444488899999999765 89
Q ss_pred EEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC-ceeeeecCc--hhhhhHhhccccceeeeeee
Q 040062 353 FACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG-RLANLAETP--AQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 353 ~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~-~I~~l~~Sp--dg~~Las~s~DG~v~~~~~~ 422 (689)
++++.||.|++|+..+++..... .....|.. .|.+++|+| ++.+|++++.||+| +++.
T Consensus 265 ~s~~~dg~v~iw~~~~~~~~~~~----------~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v--~~W~ 325 (330)
T 2hes_X 265 ASVGADGVLAVYEEVDGEWKVFA----------KRALCHGVYEINVVKWLELNGKTILATGGDDGIV--NFWS 325 (330)
T ss_dssp EEEETTSCEEEEEEETTEEEEEE----------EESCTTTTSCEEEEEEC-----CCEEEEETTSEE--EEEE
T ss_pred EEEeCCCEEEEEEcCCCceEEEe----------ccccccccceEEEEEEecCCCceEEEEecCCCcE--EEEE
Confidence 99999999999999876421100 12233554 799999999 79999999999999 6665
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.3e-36 Score=315.24 Aligned_cols=308 Identities=18% Similarity=0.219 Sum_probs=243.7
Q ss_pred ceeeeeecCCCCcEEEEEE-----cC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEE
Q 040062 56 QRLLATLRDHFGSVNCVRW-----AK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV 129 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~f-----sp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 129 (689)
.+....+.+|.+.|++++| ++ ++++|++|+.|++|++||+........ .......+.+|...|.
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~----------~~~~~~~l~~h~~~V~ 80 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY----------FGIPHKALTGHNHFVS 80 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB----------SEEEEEEECCCSSCEE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc----------cccccchhccCCCceE
Confidence 4567789999999999999 76 999999999999999999976432111 1145678899999999
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 130 DLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 130 ~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
+++|+|++.+|++++.|++|++||+++++.+..+.+|...|.+++|+|++++|++++.|++|++||+...... .....
T Consensus 81 ~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~- 158 (343)
T 2xzm_R 81 DLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKF-SSAEK- 158 (343)
T ss_dssp EEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEE-ECCTT-
T ss_pred EEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCcee-eeecc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999743222 22110
Q ss_pred cccCCcccEEEEEEcCCC----------CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCG----------HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg----------~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~ 279 (689)
......+.++.|+|++ .++++++. ...+.+|+. .......+.+|...|.+++|+|++
T Consensus 159 --~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g------ 225 (343)
T 2xzm_R 159 --ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGW----DGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNG------ 225 (343)
T ss_dssp --TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEET----TSEEEEEET-TTEEEEEEECCSSCEEEEEECTTS------
T ss_pred --cCCCceeeeeeeccccccccccCCCCCEEEEEcC----CCEEEEEcC-CCceeEEEcCccccceEEEECCCC------
Confidence 1123458999999987 67887765 356778884 455666788999999999999987
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC-CCceEEecccCCCCeEEEEEccCCCeEEEEeCC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS-PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD 358 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 358 (689)
++|++|+.|+.|++||+.. ..+...+. +...|.+++|+|++++|+++ .|
T Consensus 226 ---------------------------~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~~~v~~v~~sp~~~~la~~-~d 275 (343)
T 2xzm_R 226 ---------------------------KYIATGGKDKKLLIWDILNLTYPQREFD--AGSTINQIAFNPKLQWVAVG-TD 275 (343)
T ss_dssp ---------------------------SEEEEEETTCEEEEEESSCCSSCSEEEE--CSSCEEEEEECSSSCEEEEE-ES
T ss_pred ---------------------------CEEEEEcCCCeEEEEECCCCcccceeec--CCCcEEEEEECCCCCEEEEE-CC
Confidence 8999999999999999954 44444443 35579999999999887655 58
Q ss_pred CcEEEEEeecccccc--ccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 359 GTVANFHFEVKELGH--RLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 359 G~I~vwd~~~~~l~~--~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
+.|++|++.+++... .+...... .......|...|.+++|+|+|.+|++|+.||+| +++.
T Consensus 276 ~~v~iw~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v--~~w~ 337 (343)
T 2xzm_R 276 QGVKIFNLMTQSKAPVCTIEAEPIT--KAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI--RTFS 337 (343)
T ss_dssp SCEEEEESSSCCSCSEEECCCCSGG--GBTTBCCSCCCEEEEEECSSSCCEEEEETTSEE--EEEE
T ss_pred CCEEEEEeCCCCCCceEEeecCcch--hhhhhcCCCCceEEEEECCCCCeEEEecCCceE--EEEE
Confidence 889999998766433 22110000 001122466789999999999999999999999 6654
No 37
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-35 Score=315.09 Aligned_cols=251 Identities=20% Similarity=0.212 Sum_probs=207.6
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|. ..|++++|+|++ +|++|+.||.|+|||+.+... .......+.+|.+.|++|+|+|+|++|++|+.|++
T Consensus 80 ~~~-~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-------~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~ 150 (344)
T 4gqb_B 80 QTE-AGVADLTWVGER-GILVASDSGAVELWELDENET-------LIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDIC 150 (344)
T ss_dssp EES-SCEEEEEEETTT-EEEEEETTSEEEEEEECTTSS-------CEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ccC-CCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc-------eeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCe
Confidence 455 479999999996 688999999999999986110 11223345689999999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEe--cC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLR--GH 166 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~--~h 166 (689)
|++||+.++ +.+..+.+|...|.+++|++++. +|++++.|+.|++||+++++....+. .|
T Consensus 151 i~iwd~~~~-----------------~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~ 213 (344)
T 4gqb_B 151 IKVWDLAQQ-----------------VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP 213 (344)
T ss_dssp EEEEETTTT-----------------EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----
T ss_pred EEEEECCCC-----------------cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee
Confidence 999999987 78899999999999999999985 78999999999999999998887764 45
Q ss_pred CCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 167 SSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 167 ~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
...+.+++|+|+ +++|++++.|++|++||+++++++..
T Consensus 214 ~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~----------------------------------------- 252 (344)
T 4gqb_B 214 GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLS----------------------------------------- 252 (344)
T ss_dssp CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEE-----------------------------------------
T ss_pred eccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEE-----------------------------------------
Confidence 667999999995 57899999999999999987554332
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
+.+|...|.+++|+|++ ..+|++|+.|++|+|||+.+
T Consensus 253 -----------~~~h~~~v~~v~fsp~g--------------------------------~~~lasgs~D~~i~vwd~~~ 289 (344)
T 4gqb_B 253 -----------SAVHSQCVTGLVFSPHS--------------------------------VPFLASLSEDCSLAVLDSSL 289 (344)
T ss_dssp -----------EECCSSCEEEEEECSSS--------------------------------SCCEEEEETTSCEEEECTTC
T ss_pred -----------EcCCCCCEEEEEEccCC--------------------------------CeEEEEEeCCCeEEEEECCC
Confidence 34678889999999885 25799999999999999998
Q ss_pred CCceEEecccCCCCeEEEEEccCCCe-EEEEeCCCcEEEEEeeccccc
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYS-LFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~DG~I~vwd~~~~~l~ 372 (689)
++.+. + ..|...|++++|+|+++. |++++.||+|++|++.+..+.
T Consensus 290 ~~~~~-~-~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~~ 335 (344)
T 4gqb_B 290 SELFR-S-QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLP 335 (344)
T ss_dssp CEEEE-E-CCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC----
T ss_pred CcEEE-E-cCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCCC
Confidence 87554 3 468999999999999874 668999999999999875543
No 38
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=3.9e-35 Score=305.61 Aligned_cols=290 Identities=24% Similarity=0.355 Sum_probs=250.7
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.....++.+|.+.|++++|+|++++|++++.||.|++|++.++ +....+.+|...|.+++|+|
T Consensus 13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-----------------~~~~~~~~h~~~v~~~~~~~ 75 (312)
T 4ery_A 13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------------KFEKTISGHKLGISDVAWSS 75 (312)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------------CEEEEECCCSSCEEEEEECT
T ss_pred ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-----------------ccchhhccCCCceEEEEEcC
Confidence 5667788999999999999999999999999999999999876 56778889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
++++|++++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|++||+++++....+..+...
T Consensus 76 ~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~---- 151 (312)
T 4ery_A 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDP---- 151 (312)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999888877765433
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee-cCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
+..+.|+|+++++++++.+ ..+.+|+.........+ ..+...+..++|+|++
T Consensus 152 --v~~~~~~~~~~~l~~~~~d----~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 204 (312)
T 4ery_A 152 --VSAVHFNRDGSLIVSSSYD----GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNG--------------------- 204 (312)
T ss_dssp --EEEEEECTTSSEEEEEETT----SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTS---------------------
T ss_pred --EEEEEEcCCCCEEEEEeCC----CcEEEEECCCCceeeEEeccCCCceEEEEECCCC---------------------
Confidence 8999999999999998763 46778988776655544 3566789999999986
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCC---eEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS---VVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++|++++.|+.|++||+.+++.+..+.. |... +......+++.+|++|+.||.|++||++++++
T Consensus 205 ------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~ 271 (312)
T 4ery_A 205 ------------KYILAATLDNTLKLWDYSKGKCLKTYTG-HKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI 271 (312)
T ss_dssp ------------SEEEEEETTTEEEEEETTTTEEEEEECS-SCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE
T ss_pred ------------CEEEEEcCCCeEEEEECCCCcEEEEEEe-cCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh
Confidence 8999999999999999999988877654 3332 23333446789999999999999999998876
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc--cccceeeeee
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS--AKETTTKKVV 421 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s--~DG~v~~~~~ 421 (689)
.. .+..|.+.|.+++|+|++.+|++++ .||+| +++
T Consensus 272 ~~-------------~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i--~~W 308 (312)
T 4ery_A 272 VQ-------------KLQGHTDVVISTACHPTENIIASAALENDKTI--KLW 308 (312)
T ss_dssp EE-------------EECCCSSCEEEEEECSSSSEEEEEECTTTCCE--EEE
T ss_pred hh-------------hhhccCCcEEEEeecCcCCceEEEEccCCccE--EEe
Confidence 53 3445778899999999999999987 68888 554
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=8.7e-36 Score=368.10 Aligned_cols=334 Identities=19% Similarity=0.244 Sum_probs=283.4
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
.+|. ..|++++|+|+|++|++|+.||.|+|||+.+ ++.+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 612 ~~h~-~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~ 679 (1249)
T 3sfz_A 612 RPHT-DAVYHACFSQDGQRIASCGADKTLQVFKAET-----------GEKLLDIKAHEDEVLCCAFSSDDSYIATCSADK 679 (1249)
T ss_dssp CCCS-SCEEEEEECTTSSEEEEEETTSCEEEEETTT-----------CCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred eccc-ccEEEEEECCCCCEEEEEeCCCeEEEEECCC-----------CCEEEEeccCCCCEEEEEEecCCCEEEEEeCCC
Confidence 4687 5999999999999999999999999999987 788889999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
.|++||+.++ +.+..+.+|...|.+++|+++ +.++++++.|+.|++||+.+++++..+.+|
T Consensus 680 ~v~vwd~~~~-----------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h 742 (1249)
T 3sfz_A 680 KVKIWDSATG-----------------KLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGH 742 (1249)
T ss_dssp EEEEEETTTC-----------------CEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCC
T ss_pred eEEEEECCCC-----------------ceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCC
Confidence 9999999987 678888999999999999994 558999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc------------------------------------
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA------------------------------------ 210 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~------------------------------------ 210 (689)
...|.+++|+|++++|++++.||+|++||++++.....+.....
T Consensus 743 ~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~ 822 (1249)
T 3sfz_A 743 TNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL 822 (1249)
T ss_dssp SSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEE
T ss_pred CCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEE
Confidence 99999999999999999999999999999987765444321100
Q ss_pred -------------ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccc
Q 040062 211 -------------KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 211 -------------~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~ 277 (689)
.......+.+++|+|++.++++++. ...+.+|+.........+.+|...|.+++|+|++
T Consensus 823 ~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~----dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg---- 894 (1249)
T 3sfz_A 823 LFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALS----QYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDG---- 894 (1249)
T ss_dssp EEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECS----SSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS----
T ss_pred EEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeC----CCeEEEEEcCCCceeeecCCCccceEEEEECCCC----
Confidence 0011234677888888888888765 3467799998888888999999999999999987
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc-----------------------------
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP----------------------------- 328 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~----------------------------- 328 (689)
.+|++++.|+.|++||+.....
T Consensus 895 -----------------------------~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (1249)
T 3sfz_A 895 -----------------------------SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRG 945 (1249)
T ss_dssp -----------------------------SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSS
T ss_pred -----------------------------CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcc
Confidence 7999999999999999753110
Q ss_pred eEEe-------cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC
Q 040062 329 LFVA-------KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET 401 (689)
Q Consensus 329 ~~~~-------~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S 401 (689)
+... ...+...+.+++|+|+++++++|+.||.|++|++.+++... .+..|.+.|.+++|+
T Consensus 946 ~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~-------------~~~~h~~~v~~l~~s 1012 (1249)
T 3sfz_A 946 LQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFS-------------SGVGHKKAVRHIQFT 1012 (1249)
T ss_dssp EEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEE-------------ECCCCSSCCCCEEEC
T ss_pred eEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceee-------------ecccCCCceEEEEEC
Confidence 0000 01124579999999999999999999999999998876543 334577889999999
Q ss_pred chhhhhHhhccccceeeeeeec
Q 040062 402 PAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 402 pdg~~Las~s~DG~v~~~~~~~ 423 (689)
||+.+|++++.||+| +++..
T Consensus 1013 ~dg~~l~s~~~dg~i--~vwd~ 1032 (1249)
T 3sfz_A 1013 ADGKTLISSSEDSVI--QVWNW 1032 (1249)
T ss_dssp SSSSCEEEECSSSBE--EEEET
T ss_pred CCCCEEEEEcCCCEE--EEEEC
Confidence 999999999999999 66653
No 40
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.1e-35 Score=314.24 Aligned_cols=289 Identities=17% Similarity=0.230 Sum_probs=244.2
Q ss_pred ecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccce--eeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 11 HEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR--LLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 11 H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
|. .+|++++|+|++++|++|+.|+.|+|||+.. .+ .+..+.+|.+.|.+++|+|++++|++++.|+
T Consensus 7 ~~-~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg 74 (372)
T 1k8k_C 7 LV-EPISCHAWNKDRTQIAICPNNHEVHIYEKSG-----------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDR 74 (372)
T ss_dssp CS-SCCCEEEECTTSSEEEEECSSSEEEEEEEET-----------TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTS
T ss_pred cC-CCeEEEEECCCCCEEEEEeCCCEEEEEeCCC-----------CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCC
Confidence 66 6999999999999999999999999999986 44 7888999999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE---EEE-Ee
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC---TAV-LR 164 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~---~~~-l~ 164 (689)
.|++||+.++. +.....+..|...|.+++|+|++++|++++.|+.|++||+..+.. ... ..
T Consensus 75 ~i~vwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~ 139 (372)
T 1k8k_C 75 NAYVWTLKGRT---------------WKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKK 139 (372)
T ss_dssp CEEEEEEETTE---------------EEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECT
T ss_pred eEEEEECCCCe---------------eeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeec
Confidence 99999997762 123444567999999999999999999999999999999988762 333 36
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC------------------CCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS------------------DWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~------------------~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
.|...|.+++|+|++++|++++.|+.|++||++ .++.+..+..+. ..+.+++|+|+
T Consensus 140 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~ 213 (372)
T 1k8k_C 140 PIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC------GWVHGVCFSAN 213 (372)
T ss_dssp TCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS------SCEEEEEECSS
T ss_pred ccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCC------CeEEEEEECCC
Confidence 689999999999999999999999999999964 455555555433 34899999999
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
+++|++++. ...+.+|+.........+..|..++.+++|+|++
T Consensus 214 ~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~--------------------------------- 256 (372)
T 1k8k_C 214 GSRVAWVSH----DSTVCLADADKKMAVATLASETLPLLAVTFITES--------------------------------- 256 (372)
T ss_dssp SSEEEEEET----TTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETT---------------------------------
T ss_pred CCEEEEEeC----CCEEEEEECCCCceeEEEccCCCCeEEEEEecCC---------------------------------
Confidence 999999876 3567899988888888889999999999999886
Q ss_pred cEEEEEeCCCcEEEEeCCC--CC--------------------------------ce------EEecccCCCCeEEEEEc
Q 040062 307 NVIAIGSQDRTITVWTTAS--PR--------------------------------PL------FVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~--~~--------------------------------~~------~~~~~~h~~~V~~l~~s 346 (689)
.+|++| .|+.|++|++.. +. .. ..+...|...|++++|+
T Consensus 257 ~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 335 (372)
T 1k8k_C 257 SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVL 335 (372)
T ss_dssp EEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEE
T ss_pred CEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEe
Confidence 677766 999999999987 31 00 22334789999999976
Q ss_pred -cCC---CeEEEEeCCCcEEEEEeeccc
Q 040062 347 -PDG---YSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 347 -pdg---~~L~sgs~DG~I~vwd~~~~~ 370 (689)
++| .+|++++.||.|++|++++++
T Consensus 336 ~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 336 SGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp ESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cCCCcceeeEEEecCCCceEEEEecChh
Confidence 666 999999999999999997754
No 41
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=3.7e-35 Score=334.15 Aligned_cols=361 Identities=17% Similarity=0.134 Sum_probs=275.2
Q ss_pred eeeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC---cEEEEEEcCC-CCEEE
Q 040062 8 WVRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG---SVNCVRWAKH-GRYIA 82 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~v~fspd-g~~La 82 (689)
+..|. ..|++++|+|+++ +|++++.|+.|++||+.. .+.+..+..|.. .|.+++|+|+ +++|+
T Consensus 156 ~~~~~-~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 223 (615)
T 1pgu_A 156 VSGHS-QRINACHLKQSRPMRSMTVGDDGSVVFYQGPP-----------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVI 223 (615)
T ss_dssp CCSCS-SCEEEEEECSSSSCEEEEEETTTEEEEEETTT-----------BEEEEEECSSSCTTCCEEEEEECSTTCCEEE
T ss_pred eecCC-ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCC-----------cceeeeecccCCCCceEEEEEECCCCCCEEE
Confidence 34577 5999999999998 899999999999999886 788889999999 9999999999 99999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE-e---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL-R---GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI 158 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l-~---~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~ 158 (689)
+++.|+.|++||+.++ +....+ . .|...|.+++|+ ++.+|++++.|+.|++||+.+++
T Consensus 224 ~~~~dg~i~vwd~~~~-----------------~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~ 285 (615)
T 1pgu_A 224 TVGSDRKISCFDGKSG-----------------EFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSK 285 (615)
T ss_dssp EEETTCCEEEEETTTC-----------------CEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTE
T ss_pred EEeCCCeEEEEECCCC-----------------CEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCc
Confidence 9999999999999887 566666 5 899999999999 99999999999999999999999
Q ss_pred EEEEEecC----CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc----------------------
Q 040062 159 CTAVLRGH----SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS---------------------- 212 (689)
Q Consensus 159 ~~~~l~~h----~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~---------------------- 212 (689)
.+..+..+ ...+.++.|. ++++|++++.|+.|++||+.+++.+..+..+....
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 286 CVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSS 364 (615)
T ss_dssp EEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTT
T ss_pred EEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEc
Confidence 99999876 3678888885 89999999999999999999877776665543220
Q ss_pred -----CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC----------------------------------Ccee
Q 040062 213 -----LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG----------------------------------EWAA 253 (689)
Q Consensus 213 -----~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~----------------------------------~~~~ 253 (689)
.....+.++.| +++..+++++.++ .+.+|+.. ....
T Consensus 365 ~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~----~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~ 439 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDN-SKAQEYSSISWDD----TLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDI 439 (615)
T ss_dssp TEEECCCCSCEEEEEC-CSTTCCEEEETTT----EEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCE
T ss_pred hhhcCcccCceEEEEE-CCCcEEEEEeCCC----CEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCce
Confidence 11223555555 3344555544322 22233221 2222
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccc--cccccc---------cccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASS--QEVKAA---------PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~--~~~~~~---------~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
...+ .|...+.+++|+ . ..+..... ...... .........+....+++++++|++++.|+.|++||
T Consensus 440 ~~~~-~~~~~~~~~~~~-~-~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~ 516 (615)
T 1pgu_A 440 IKSV-RLNSPGSAVSLS-Q-NYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYD 516 (615)
T ss_dssp EEEE-ECSSCEEEEEEC-S-SEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred eeec-ccCCCceEEEEc-C-CEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEee
Confidence 2222 266777888887 2 22222111 110000 00111122233445577889999999999999999
Q ss_pred CCCCCceEEecccCCCCeEEEEEcc----------CCCeEEEEeCCCcEEEEEeecc-ccccccChHHHHHHHHhccCCc
Q 040062 323 TASPRPLFVAKHFFTQSVVDLSWSP----------DGYSLFACSLDGTVANFHFEVK-ELGHRLSDAELDELKRSRYGDV 391 (689)
Q Consensus 323 ~~~~~~~~~~~~~h~~~V~~l~~sp----------dg~~L~sgs~DG~I~vwd~~~~-~l~~~l~~~~~~~~~~~~~g~~ 391 (689)
+.+++.+..+...|...|++++|+| ++++|++++.||.|++||++++ +.. ..+..|
T Consensus 517 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-------------~~~~~h 583 (615)
T 1pgu_A 517 LQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKII-------------KALNAH 583 (615)
T ss_dssp TTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCE-------------EETTSS
T ss_pred CCCCcceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceec-------------hhhhcC
Confidence 9999888876655899999999999 9999999999999999999886 333 334457
Q ss_pred cCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 392 RGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 392 ~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
.+.|.+++|+||+. |++++.||+| +++..
T Consensus 584 ~~~v~~l~~s~~~~-l~s~~~d~~v--~iw~~ 612 (615)
T 1pgu_A 584 KDGVNNLLWETPST-LVSSGADACI--KRWNV 612 (615)
T ss_dssp TTCEEEEEEEETTE-EEEEETTSCE--EEEEE
T ss_pred ccceEEEEEcCCCC-eEEecCCceE--EEEee
Confidence 78899999999999 9999999999 66653
No 42
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.2e-35 Score=319.54 Aligned_cols=305 Identities=18% Similarity=0.184 Sum_probs=252.3
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC----C---CE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH----G---RY 80 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd----g---~~ 80 (689)
+.+|. ..|++|+|+| ++|++|+.||.|+|||+..... ......+..+.+|...|++++|+|+ + ++
T Consensus 12 ~~~h~-~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~-----~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~ 83 (397)
T 1sq9_A 12 GKAHD-ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN-----ENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL 83 (397)
T ss_dssp SSCSS-SCEEEEEECS--SEEEEEETTSEEEEEESBCCTT-----CCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred hhhhh-cCeEEEEecC--CeEEEEcCCCEEEEEECCCccc-----ccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence 34677 5999999999 7999999999999999986211 1112367788899999999999999 9 99
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-----CCCEEEEEEc----CCCCE-EEEEeCCCeEE
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-----TADVVDLNWS----PDDSI-LASGSLDNTIH 150 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-----~~~V~~l~~s----pdg~~-Lasgs~Dg~I~ 150 (689)
|++++.|+.|++|++.++... .......+..| ...|.+++|+ |++.+ |++++.|+.|+
T Consensus 84 l~s~~~dg~i~iw~~~~~~~~------------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 84 VATTSFSGDLLFYRITREDET------------KKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY 151 (397)
T ss_dssp EEEEETTSCEEEEEEEECTTT------------CCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred EEEEcCCCCEEEEEccCCccc------------ccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEE
Confidence 999999999999999876310 00236777788 5899999999 99999 99999999999
Q ss_pred EEEcCC------CeEEE-----EE-------ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC---cc
Q 040062 151 IWNMST------GICTA-----VL-------RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG---HW 209 (689)
Q Consensus 151 vwd~~~------~~~~~-----~l-------~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~---~~ 209 (689)
+||+.+ ++.+. .+ ..|...|.+++|+|++ +|++++.|+.|++||+++++.+..+.. +.
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~ 230 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMI 230 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEecccccc
Confidence 999988 66555 66 4488999999999999 999999999999999999888887776 30
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC-------------CCCCEEEEEEcCCcccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG-------------HNAPIIVVKFNHSMFRR 276 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-------------h~~~v~~v~fsp~~~~~ 276 (689)
.....+.+++|+|++++|++++.+ .....+.+|+.........+.+ |...|.+++|+|++
T Consensus 231 ---~~~~~i~~i~~~~~~~~l~~~~~d-~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--- 303 (397)
T 1sq9_A 231 ---NNSNSIRSVKFSPQGSLLAIAHDS-NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSG--- 303 (397)
T ss_dssp ---CCCCCEEEEEECSSTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSS---
T ss_pred ---ccCCccceEEECCCCCEEEEEecC-CCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCC---
Confidence 002338999999999999988652 1115788999888888888888 99999999999986
Q ss_pred ccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-----cC---------------
Q 040062 277 NSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-----FF--------------- 336 (689)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-----~h--------------- 336 (689)
++|++++.|+.|++||+.+++.+..+.. .|
T Consensus 304 ------------------------------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 353 (397)
T 1sq9_A 304 ------------------------------ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 353 (397)
T ss_dssp ------------------------------SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCS
T ss_pred ------------------------------CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhcccccccccc
Confidence 7999999999999999999988888761 34
Q ss_pred CCCeEEEEEccCC----------CeEEEEeCCCcEEEEEeeccc
Q 040062 337 TQSVVDLSWSPDG----------YSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 337 ~~~V~~l~~spdg----------~~L~sgs~DG~I~vwd~~~~~ 370 (689)
...|.+++|+|++ ++|++++.||.|++|++++++
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~ 397 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK 397 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence 8899999999998 799999999999999998763
No 43
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=1.1e-34 Score=319.41 Aligned_cols=316 Identities=19% Similarity=0.293 Sum_probs=271.3
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|.+..|.|+.+ ++++|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++|++++ +|++|+.
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~-----------~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~ 181 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSIN-----------KKFLLQLSGHDGGVWALKYAHGG-ILVSGST 181 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEECSTT-EEEEEET
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCC-----------CcEEEEEeCCCcCEEEEEEcCCC-EEEEEeC
Confidence 456788545677777 467999999999999999987 78899999999999999999988 9999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc--CCCCEEEEEeCCCeEEEEEcCCCe------
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS--PDDSILASGSLDNTIHIWNMSTGI------ 158 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pdg~~Lasgs~Dg~I~vwd~~~~~------ 158 (689)
||.|++||+.++ +....+.+|...|.+++|+ +++.+|++++.|+.|++||+.++.
T Consensus 182 dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~ 244 (464)
T 3v7d_B 182 DRTVRVWDIKKG-----------------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHG 244 (464)
T ss_dssp TSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred CCCEEEEECCCC-----------------cEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence 999999999987 6888899999999999998 577899999999999999998765
Q ss_pred -----------------EEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 159 -----------------CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 159 -----------------~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
.+..+.+|...|.++ ++++++|++++.|+.|++||+++++.+..+..+... +.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~------v~~~ 316 (464)
T 3v7d_B 245 EEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR------IYST 316 (464)
T ss_dssp --CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------EEEE
T ss_pred ccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCC------EEEE
Confidence 356778899988877 577999999999999999999999988888766443 8999
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
+|+|+++++++++. ...+.+|+.........+.+|...|.++.|++
T Consensus 317 ~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~------------------------------ 362 (464)
T 3v7d_B 317 IYDHERKRCISASM----DTTIRIWDLENGELMYTLQGHTALVGLLRLSD------------------------------ 362 (464)
T ss_dssp EEETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCSSCEEEEEECS------------------------------
T ss_pred EEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCCcEEEEEEcC------------------------------
Confidence 99999999999876 35678999988888889999999999999973
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
.+|++++.||.|++||+.++....... +...+..++|++++++|++++ ||.|++||++++++....
T Consensus 363 -----~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~------ 428 (464)
T 3v7d_B 363 -----KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHAN------ 428 (464)
T ss_dssp -----SEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESC------
T ss_pred -----CEEEEEeCCCcEEEEECCCCceeeeec--CCCCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehh------
Confidence 489999999999999999987766554 466788899999999999999 999999999998876532
Q ss_pred HHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
...|.+.|.+++|+ +..++++++.||.+
T Consensus 429 ------~~~~~~~v~~v~~~-~~~l~~~~~~~g~~ 456 (464)
T 3v7d_B 429 ------ILKDADQIWSVNFK-GKTLVAAVEKDGQS 456 (464)
T ss_dssp ------TTTTCSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred ------hccCCCcEEEEEec-CCEEEEEEEeCCeE
Confidence 22356689999997 45566666777765
No 44
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.4e-34 Score=317.27 Aligned_cols=316 Identities=23% Similarity=0.360 Sum_probs=274.5
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|.+..|.|+.+ +|++|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++|+ +++|++|+.
T Consensus 113 ~l~~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~-----------~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~ 177 (445)
T 2ovr_B 113 VLKGHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVT-----------GKCLRTLVGHTGGVWSSQMR--DNIIISGST 177 (445)
T ss_dssp EEECSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTT-----------CCEEEECCCCSSCEEEEEEE--TTEEEEEET
T ss_pred EecccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCC-----------CcEEEEEcCCCCCEEEEEec--CCEEEEEeC
Confidence 355788545676555 689999999999999999987 78889999999999999998 669999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
||.|++||+.++ +....+.+|...|.+++|+ +.+|++++.|+.|++||+.+++.+..+.+|
T Consensus 178 dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~ 238 (445)
T 2ovr_B 178 DRTLKVWNAETG-----------------ECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQCLHVLMGH 238 (445)
T ss_dssp TSCEEEEETTTT-----------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCCEEEEEECC
T ss_pred CCeEEEEECCcC-----------------cEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCcEEEEEcCC
Confidence 999999999887 6788899999999999995 678999999999999999999999999999
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccccee
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~ 246 (689)
...|.+++| ++++|++++.|+.|++||+++++.+..+..+... +.++.| ++.++++++. ...+.+|
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~------v~~~~~--~~~~l~~~~~----d~~i~i~ 304 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR------VYSLQF--DGIHVVSGSL----DTSIRVW 304 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC------EEEEEE--CSSEEEEEET----TSCEEEE
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc------eEEEEE--CCCEEEEEeC----CCeEEEE
Confidence 999999999 6889999999999999999999888888765443 888888 8889988876 4567899
Q ss_pred ecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 247 ERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 247 ~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
+.........+.+|...+.++.+++ +++++|+.||.|++||++++
T Consensus 305 d~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------------~~l~~~~~dg~i~vwd~~~~ 349 (445)
T 2ovr_B 305 DVETGNCIHTLTGHQSLTSGMELKD-----------------------------------NILVSGNADSTVKIWDIKTG 349 (445)
T ss_dssp ETTTCCEEEEECCCCSCEEEEEEET-----------------------------------TEEEEEETTSCEEEEETTTC
T ss_pred ECCCCCEEEEEcCCcccEEEEEEeC-----------------------------------CEEEEEeCCCeEEEEECCCC
Confidence 9988888888899999999888742 58999999999999999999
Q ss_pred CceEEecc--cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchh
Q 040062 327 RPLFVAKH--FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ 404 (689)
Q Consensus 327 ~~~~~~~~--~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg 404 (689)
+.+..+.. .|...|.+++|+ +++|++++.||.|++||+.+++....+.. ...+.+.+.|.+++|+|++
T Consensus 350 ~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~~ 419 (445)
T 2ovr_B 350 QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVT--------LESGGSGGVVWRIRASNTK 419 (445)
T ss_dssp CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEE--------CTTGGGTCEEEEEEECSSE
T ss_pred cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeec--------cccCCCCceEEEEEecCCE
Confidence 98887764 377889999995 68999999999999999999887654421 1113466789999999999
Q ss_pred hhhHhhccccc
Q 040062 405 LLLEAASAKET 415 (689)
Q Consensus 405 ~~Las~s~DG~ 415 (689)
.+|++++.||+
T Consensus 420 ~~la~~~~dg~ 430 (445)
T 2ovr_B 420 LVCAVGSRNGT 430 (445)
T ss_dssp EEEEEECSSSS
T ss_pred EEEEEcccCCC
Confidence 99999999998
No 45
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.6e-35 Score=307.95 Aligned_cols=252 Identities=18% Similarity=0.243 Sum_probs=224.4
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
+..+++.+|.+.|++++|+|++++|++++.||.|++||+.++ ..+..+..|...|.+++|+++
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-----------------~~~~~~~~~~~~v~~~~~~~~ 66 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-----------------VEVRSIQVTETPVRAGKFIAR 66 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------------EEEEEEECCSSCEEEEEEEGG
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----------------ceeEEeeccCCcEEEEEEeCC
Confidence 556788999999999999999999999999999999999887 678889999999999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
+++|++|+.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||++++...
T Consensus 67 ~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-------------- 132 (304)
T 2ynn_A 67 KNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWAL-------------- 132 (304)
T ss_dssp GTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEE--------------
T ss_pred CCEEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcch--------------
Confidence 999999999999999999999999999999999999999999999999999999999998643111
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
...+.+|...|.+++|+|..
T Consensus 133 -------------------------------------~~~~~~h~~~v~~v~~~p~~----------------------- 152 (304)
T 2ynn_A 133 -------------------------------------EQTFEGHEHFVMCVAFNPKD----------------------- 152 (304)
T ss_dssp -------------------------------------EEEECCCCSCEEEEEECTTC-----------------------
T ss_pred -------------------------------------hhhhcccCCcEEEEEECCCC-----------------------
Confidence 11245788999999999852
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEcc--CCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSP--DGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~sp--dg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
+.+|++|+.|+.|++||+....+...+...|...+..+.|+| ++.+|++++.||+|++||+++++...
T Consensus 153 ---------~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~- 222 (304)
T 2ynn_A 153 ---------PSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA- 222 (304)
T ss_dssp ---------TTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEE-
T ss_pred ---------CCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccce-
Confidence 379999999999999999998888887777778899999987 78899999999999999999877653
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
.+..|...|..++|+|++.+|++++.||+| +++..
T Consensus 223 ------------~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i--~iWd~ 257 (304)
T 2ynn_A 223 ------------TLEGHMSNVSFAVFHPTLPIIISGSEDGTL--KIWNS 257 (304)
T ss_dssp ------------EEECCSSCEEEEEECSSSSEEEEEETTSCE--EEEET
T ss_pred ------------eeCCCCCCEEEEEECCCCCEEEEEcCCCeE--EEEEC
Confidence 334577789999999999999999999999 77753
No 46
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.4e-35 Score=344.80 Aligned_cols=342 Identities=18% Similarity=0.256 Sum_probs=284.2
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..+.+|. ..|.+++|+|++++||+|+.||.|+|||+.+ ++.+..+..|.+.|.+++|+|++++|++++
T Consensus 7 ~~~~~h~-~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 74 (814)
T 3mkq_A 7 KTFSNRS-DRVKGIDFHPTEPWVLTTLYSGRVEIWNYET-----------QVEVRSIQVTETPVRAGKFIARKNWIIVGS 74 (814)
T ss_dssp EEEEEEC-SCEEEEEECSSSSEEEEEETTSEEEEEETTT-----------TEEEEEEECCSSCEEEEEEEGGGTEEEEEE
T ss_pred eeeecCC-CceEEEEECCCCCEEEEEeCCCEEEEEECCC-----------CceEEEEecCCCcEEEEEEeCCCCEEEEEe
Confidence 3456677 6999999999999999999999999999987 788899999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEEe
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTAVLR 164 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~~l~ 164 (689)
.||.|++||+.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+.++ .....+.
T Consensus 75 ~dg~i~vw~~~~~-----------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 137 (814)
T 3mkq_A 75 DDFRIRVFNYNTG-----------------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFE 137 (814)
T ss_dssp TTSEEEEEETTTC-----------------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEE
T ss_pred CCCeEEEEECCCC-----------------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEc
Confidence 9999999999887 677888999999999999999999999999999999999987 7788889
Q ss_pred cCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC--CCCeEEEecCCCCCcc
Q 040062 165 GHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP--CGHFITTTHGFQKPRH 241 (689)
Q Consensus 165 ~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp--dg~~l~~~~~~~~~~~ 241 (689)
+|...|.+++|+| ++++|++++.||+|++||++++.....+..+. ...+..++|+| ++.++++++. ..
T Consensus 138 ~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~~~~~----dg 208 (814)
T 3mkq_A 138 GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-----ERGVNYVDYYPLPDKPYMITASD----DL 208 (814)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCC-----TTCCCEEEECCSTTCCEEEEECT----TS
T ss_pred CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCC-----CCCEEEEEEEECCCCCEEEEEeC----CC
Confidence 9999999999999 88999999999999999998887776665432 12378899999 9999999876 35
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW 321 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw 321 (689)
.+.+|+.........+.+|...|.+++|+|++ .+|++++.||.|++|
T Consensus 209 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------------~~l~~~~~dg~v~vw 255 (814)
T 3mkq_A 209 TIKIWDYQTKSCVATLEGHMSNVSFAVFHPTL---------------------------------PIIISGSEDGTLKIW 255 (814)
T ss_dssp EEEEEETTTTEEEEEEECCSSCEEEEEECSSS---------------------------------SEEEEEETTSCEEEE
T ss_pred EEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC---------------------------------CEEEEEeCCCeEEEE
Confidence 67899988888888889999999999999987 799999999999999
Q ss_pred eCCCCCceEEecccCCCCeEEEEEccCCCe-EEEEeCCCcEEEEEeeccccccccChHH---------------------
Q 040062 322 TTASPRPLFVAKHFFTQSVVDLSWSPDGYS-LFACSLDGTVANFHFEVKELGHRLSDAE--------------------- 379 (689)
Q Consensus 322 d~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs~DG~I~vwd~~~~~l~~~l~~~~--------------------- 379 (689)
|+.+++.+..+.. |...+.+++|+|++.. +++++.|+.+.+|++........+....
T Consensus 256 d~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 334 (814)
T 3mkq_A 256 NSSTYKVEKTLNV-GLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIR 334 (814)
T ss_dssp ETTTCSEEEEECC-SSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECC
T ss_pred ECCCCcEEEEeec-CCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecc
Confidence 9999988887764 6789999999999874 2445557788999876533211111000
Q ss_pred ---------HHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 380 ---------LDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 380 ---------~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.........+.+...+.+++|+|||++|++++ ||.+ .++.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~--~i~~ 383 (814)
T 3mkq_A 335 GNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEY--VIYT 383 (814)
T ss_dssp SCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEE--EEEE
T ss_pred cccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEE--EEEE
Confidence 00000011133444689999999999999988 7887 4444
No 47
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=4.6e-36 Score=320.63 Aligned_cols=304 Identities=11% Similarity=0.075 Sum_probs=234.8
Q ss_pred ecCceEEEEEEcCCCCEEEEEeCCC-------eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 11 HEGMQIFSIDVQPGALRFATGGGDH-------KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 11 H~g~~I~si~~spdg~~Latgs~Dg-------~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
+-|.||+|++|+||+++|++||.+. .|+||++......... .........+..|...|.+++++ ++.+++
T Consensus 12 ~~g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~-~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~ 88 (365)
T 4h5i_A 12 NVGYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKE-QFHILSEFALEDNDDSPTAIDAS--KGIILV 88 (365)
T ss_dssp ECSSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHH-HEEEEEEEECCTTSCCCCEEEEE--TTEEEE
T ss_pred CCCCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceee-eeeeeeEEEccCCCCceEEEEeC--CCEEEE
Confidence 3467999999999999999998643 5999998752211100 00111223567888899988875 456666
Q ss_pred Ee-----------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE-----ecCCCCEEEEEEcCCCCEEEEEe--C
Q 040062 84 GS-----------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL-----RGHTADVVDLNWSPDDSILASGS--L 145 (689)
Q Consensus 84 gs-----------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~h~~~V~~l~~spdg~~Lasgs--~ 145 (689)
|. .|+.+++|++....... +..... ..+...+.+++|||||++|++++ .
T Consensus 89 g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~ 155 (365)
T 4h5i_A 89 GCNENSTKITQGKGNKHLRKFKYDKVNDQL-------------EFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKV 155 (365)
T ss_dssp ECCCCHHHHHHTSCCCCEEEEEEETTTTEE-------------EEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCS
T ss_pred EECCCccEEEEecCCCcEEEEEecCCCceE-------------EEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCC
Confidence 54 46789999987653211 111111 23445689999999999887554 7
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
|++|+|||+.+++++..+. |...|.+++|+|+|++|++++.| .+++|+..++......... .....+.+++|+|
T Consensus 156 d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~fsp 229 (365)
T 4h5i_A 156 PAIMRIIDPSDLTEKFEIE-TRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCIARKTDF----DKNWSLSKINFIA 229 (365)
T ss_dssp SCEEEEEETTTTEEEEEEE-CSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEEEEECCC----CTTEEEEEEEEEE
T ss_pred CCEEEEeECCCCcEEEEeC-CCCceEEEEEccCCceEEeccce-eEEEEEeccCcceeeeecC----CCCCCEEEEEEcC
Confidence 8999999999999999887 78889999999999999999865 5777777776655433221 1133489999999
Q ss_pred CCCeEEEecCCCCCccccceeecCCcee----eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 226 CGHFITTTHGFQKPRHSAPVLERGEWAA----TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 226 dg~~l~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
+++++++++.++.....+..|+...... ...+.+|...|.+++|+|++
T Consensus 230 dg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg---------------------------- 281 (365)
T 4h5i_A 230 DDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG---------------------------- 281 (365)
T ss_dssp TTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS----------------------------
T ss_pred CCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC----------------------------
Confidence 9999999987766666667776554432 34577899999999999987
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
++||+|+.|+.|+|||+++++++..+...|...|++++|||||++|++||.|++|+||++..+
T Consensus 282 -----~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 282 -----ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp -----CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred -----CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 899999999999999999999999888889999999999999999999999999999999654
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1e-34 Score=313.26 Aligned_cols=298 Identities=19% Similarity=0.270 Sum_probs=235.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCC--CcccceEEEEEecCCCCEEEEEEcCCCCEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPP--DIENWKVAMTLRGHTADVVDLNWSPDDSILA 141 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~--~~~~~~~~~~l~~h~~~V~~l~~spdg~~La 141 (689)
.|.+.|+|++|+|+|++||+|+ |+.++||++.++.....+...... +.+.. .......+...|.+++|+|++++|+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~v~~v~~s~dg~~l~ 139 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENL-NTSSSPSSDLYIRSVCFSPDGKFLA 139 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccc-cccccCCCceeEEEEEECCCCCEEE
Confidence 5999999999999999999987 689999999887433222111000 00000 0001112334599999999999999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 142 SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
+++.|+.|++||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+++++....+... ..+..+
T Consensus 140 s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-------~~v~~~ 212 (393)
T 1erj_A 140 TGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE-------DGVTTV 212 (393)
T ss_dssp EEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-------SCEEEE
T ss_pred EEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC-------CCcEEE
Confidence 9999999999999999999999999999999999999999999999999999999998877666432 238899
Q ss_pred EEcC-CCCeEEEecCCCCCccccceeecCCceeeeee-------cCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 222 GWSP-CGHFITTTHGFQKPRHSAPVLERGEWAATFDF-------LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 222 ~~sp-dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-------~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
+|+| ++++|++++.+ ..+.+|+.........+ .+|...|.+++|+|++
T Consensus 213 ~~~~~~~~~l~~~s~d----~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-------------------- 268 (393)
T 1erj_A 213 AVSPGDGKYIAAGSLD----RAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-------------------- 268 (393)
T ss_dssp EECSTTCCEEEEEETT----SCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS--------------------
T ss_pred EEECCCCCEEEEEcCC----CcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC--------------------
Confidence 9999 89999988763 55778887665544444 5799999999999987
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc------------eEEecccCCCCeEEEEEccCCCeEEEEeCCCcE
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP------------LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTV 361 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~------------~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I 361 (689)
.+|++|+.|+.|++||+++... ...+ ..|...|.+++|+|++++|++++.||.|
T Consensus 269 -------------~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~l~sgs~D~~v 334 (393)
T 1erj_A 269 -------------QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY-IGHKDFVLSVATTQNDEYILSGSKDRGV 334 (393)
T ss_dssp -------------SEEEEEETTSEEEEEEC---------------CEEEEE-ECCSSCEEEEEECGGGCEEEEEETTSEE
T ss_pred -------------CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE-ecccCcEEEEEECCCCCEEEEEeCCCeE
Confidence 8999999999999999976432 2222 3578899999999999999999999999
Q ss_pred EEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc------hhhhhHhhccccceeeeeeec
Q 040062 362 ANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP------AQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 362 ~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp------dg~~Las~s~DG~v~~~~~~~ 423 (689)
++||+.+++... .+..|.+.|.+++|++ ++.+|++++.||+| +++..
T Consensus 335 ~iwd~~~~~~~~-------------~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i--~iW~~ 387 (393)
T 1erj_A 335 LFWDKKSGNPLL-------------MLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKA--RIWKY 387 (393)
T ss_dssp EEEETTTCCEEE-------------EEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEE--EEEEE
T ss_pred EEEECCCCeEEE-------------EECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcE--EECcc
Confidence 999998877643 3345778899999875 78999999999999 66653
No 49
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.4e-34 Score=333.83 Aligned_cols=292 Identities=23% Similarity=0.302 Sum_probs=245.2
Q ss_pred ceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 7 SWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
.+.+|. ..|++|+|+|++ .+|++|+.|+.|+|||+..... ........+.+|...|.+++|+|++++|++|+
T Consensus 377 ~l~~H~-~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs 449 (694)
T 3dm0_A 377 TMRAHT-DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDK------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGS 449 (694)
T ss_dssp EEECCS-SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTT------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred hcccCC-ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCc------ccccccceecCCCCcEEEEEECCCCCEEEEEe
Confidence 456788 599999999875 7999999999999999975211 12345678899999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE--
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL-- 163 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l-- 163 (689)
.|+.|+|||+.++ .....+.+|...|.+++|+|++++|++++.|++|++||+.........
T Consensus 450 ~Dg~v~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~ 512 (694)
T 3dm0_A 450 WDGELRLWDLAAG-----------------VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEG 512 (694)
T ss_dssp TTSEEEEEETTTT-----------------EEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSS
T ss_pred CCCcEEEEECCCC-----------------cceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccC
Confidence 9999999999887 678889999999999999999999999999999999998665444332
Q ss_pred -ecCCCCeEEEEEccCC--CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 164 -RGHSSLVKGVAWDPIG--SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 164 -~~h~~~V~~l~~spdg--~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
.+|...|.+++|+|++ .+|++++.|++|++||+++.++...+..|... +.+++|+|++++|++++. .
T Consensus 513 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~------v~~v~~spdg~~l~sg~~----D 582 (694)
T 3dm0_A 513 GEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGGK----D 582 (694)
T ss_dssp TTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSC------EEEEEECTTSSEEEEEET----T
T ss_pred CCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCC------EEEEEEeCCCCEEEEEeC----C
Confidence 3688899999999986 68999999999999999999888888776543 999999999999999876 4
Q ss_pred cccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEE
Q 040062 241 HSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITV 320 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~i 320 (689)
..+.+|+.........+. +...+.+++|+|++ .+++++ .|+.|+|
T Consensus 583 g~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~---------------------------------~~l~~~-~~~~i~i 627 (694)
T 3dm0_A 583 GVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNR---------------------------------YWLCAA-TEHGIKI 627 (694)
T ss_dssp SBCEEEETTTTEEEECCB-CSSCEEEEEECSSS---------------------------------SEEEEE-ETTEEEE
T ss_pred CeEEEEECCCCceEEEec-CCCcEEEEEEcCCC---------------------------------cEEEEE-cCCCEEE
Confidence 567899988877766654 45689999999986 555555 4667999
Q ss_pred EeCCCCCceEEecccC------------------CCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 321 WTTASPRPLFVAKHFF------------------TQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 321 wd~~~~~~~~~~~~~h------------------~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
||+++++.+..+...+ ...+++++|+|||++|++|+.||.|+||++.
T Consensus 628 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 628 WDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp EETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred EECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 9999988776554211 1137899999999999999999999999975
No 50
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=4.6e-35 Score=361.67 Aligned_cols=363 Identities=21% Similarity=0.271 Sum_probs=289.7
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs 85 (689)
+.+|. ..|.+++|+|++++|++|+.||.|+|||+.+ ++.+..+.+|.+.|.+++|+| ++.+|++|+
T Consensus 653 ~~~h~-~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~ 720 (1249)
T 3sfz_A 653 IKAHE-DEVLCCAFSSDDSYIATCSADKKVKIWDSAT-----------GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720 (1249)
T ss_dssp ECCCS-SCEEEEEECTTSSEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECSSSSCCEEEEEE
T ss_pred eccCC-CCEEEEEEecCCCEEEEEeCCCeEEEEECCC-----------CceEEEEcCCCCcEEEEEEecCCCceEEEEEe
Confidence 44677 5999999999999999999999999999987 788899999999999999999 566999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE--
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL-- 163 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l-- 163 (689)
.|+.|++||+.++ +....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 721 ~d~~v~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~ 783 (1249)
T 3sfz_A 721 NDFFLKLWDLNQK-----------------ECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783 (1249)
T ss_dssp TTSCEEEEETTSS-----------------SEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEEC
T ss_pred CCCeEEEEECCCc-----------------chhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecc
Confidence 9999999999887 577888899999999999999999999999999999999876554432
Q ss_pred -----------------------------------------------------ecCCCCeEEEEEccCCCEEEEEeCCCe
Q 040062 164 -----------------------------------------------------RGHSSLVKGVAWDPIGSFIASQSDDKT 190 (689)
Q Consensus 164 -----------------------------------------------------~~h~~~V~~l~~spdg~~las~s~Dg~ 190 (689)
.+|...|.+++|+|+++++++++.|+.
T Consensus 784 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~ 863 (1249)
T 3sfz_A 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYC 863 (1249)
T ss_dssp CCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSC
T ss_pred cccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCe
Confidence 167888999999999999999999999
Q ss_pred EEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC-------------------------------
Q 040062 191 VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP------------------------------- 239 (689)
Q Consensus 191 I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~------------------------------- 239 (689)
|++||+.++.....+..+... +.+++|+|+|+++++++.++..
T Consensus 864 v~vwd~~~~~~~~~~~~h~~~------v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 864 VELWNIDSRLKVADCRGHLSW------VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp EEEEETTTTEEEEEECCCSSC------EEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred EEEEEcCCCceeeecCCCccc------eEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 999999998888777765443 7788888888877777654321
Q ss_pred --------------------------------------------ccccceeecCCceeeeeecCCCCCEEEEEEcCCccc
Q 040062 240 --------------------------------------------RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 240 --------------------------------------------~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~ 275 (689)
...+.+|+.........+.+|...|.+++|+|++..
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE
Confidence 122334444444455566788899999999998765
Q ss_pred cccccccccccccccccCC---------cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEc
Q 040062 276 RNSASSQEVKAAPVGWTNG---------TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 346 (689)
+....... ....+....+ .......+++ +..+++++.|+.|++||+.+++.+..+. .|...|.+++|+
T Consensus 1018 l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~v~~~~~~~-~~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~s 1094 (1249)
T 3sfz_A 1018 LISSSEDS-VIQVWNWQTGDYVFLQAHQETVKDFRLLQ-DSRLLSWSFDGTVKVWNVITGRIERDFT-CHQGTVLSCAIS 1094 (1249)
T ss_dssp EEEECSSS-BEEEEETTTTEEECCBCCSSCEEEEEECS-SSEEEEEESSSEEEEEETTTTCCCEEEE-CCSSCCCCEEEC
T ss_pred EEEEcCCC-EEEEEECCCCceEEEecCCCcEEEEEEcC-CCcEEEEECCCcEEEEECCCCceeEEEc-ccCCcEEEEEEC
Confidence 54433221 1111111111 1111112233 4568899999999999999999888775 578899999999
Q ss_pred cCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 347 PDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 347 pdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
||+++|++++.||.|++||+.+++.... +..|.+.|++++|||||.+|++++.||+| +++..
T Consensus 1095 ~d~~~l~s~s~d~~v~iwd~~~~~~~~~-------------l~~h~~~v~~~~~s~dg~~lat~~~dg~i--~vwd~ 1156 (1249)
T 3sfz_A 1095 SDATKFSSTSADKTAKIWSFDLLSPLHE-------------LKGHNGCVRCSAFSLDGILLATGDDNGEI--RIWNV 1156 (1249)
T ss_dssp SSSSSCEEECCSSCCCEECSSSSSCSBC-------------CCCCSSCEEEEEECSSSSEEEEEETTSCC--CEEES
T ss_pred CCCCEEEEEcCCCcEEEEECCCcceeee-------------eccCCCcEEEEEECCCCCEEEEEeCCCEE--EEEEC
Confidence 9999999999999999999988776543 33577789999999999999999999999 66653
No 51
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=2.6e-34 Score=301.86 Aligned_cols=304 Identities=22% Similarity=0.287 Sum_probs=251.2
Q ss_pred ceeeeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 56 QRLLATLRDHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
..+..+|++|.+.|++|+|+|+ +++|+||+.|++|+|||+..... ........+.+|...|.+++|+
T Consensus 28 ~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------------~~~~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 28 MTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------------NYGIPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------------CSEEEEEEECCCSSCEEEEEEC
T ss_pred eEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------------ccceeeEEEeCCCCCEEEEEEC
Confidence 5667789999999999999997 68999999999999999987532 1224677889999999999999
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec-cCcccccC
Q 040062 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT-DGHWAKSL 213 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~-~~~~~~~~ 213 (689)
|++++|++++.|+.|++|+............+...+..+.+++++.+|++++.|+.+++||+......... ..+
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~----- 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESH----- 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSC-----
T ss_pred CCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccc-----
Confidence 99999999999999999999999999999989999999999999999999999999999998765443322 222
Q ss_pred CcccEEEEEEcCCCC--eEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 214 GSTFFRRLGWSPCGH--FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 214 ~~~~i~~l~~spdg~--~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
...+..+.|++++. ++++++. ...+.+|+.........+.+|.+.|.+++|+|++
T Consensus 171 -~~~v~~~~~~~~~~~~~~~s~~~----d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~------------------ 227 (340)
T 4aow_A 171 -SEWVSCVRFSPNSSNPIIVSCGW----DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDG------------------ 227 (340)
T ss_dssp -SSCEEEEEECSCSSSCEEEEEET----TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS------------------
T ss_pred -cCcccceEEccCCCCcEEEEEcC----CCEEEEEECCCCceeeEecCCCCcEEEEEECCCC------------------
Confidence 23478889988764 4555544 3567899999988888999999999999999986
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++|++|+.|+.|++||+++.+.+..+.. ...|.+++|+|++.++ +++.|+.|++||++++..
T Consensus 228 ---------------~~l~s~s~Dg~i~iwd~~~~~~~~~~~~--~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~ 289 (340)
T 4aow_A 228 ---------------SLCASGGKDGQAMLWDLNEGKHLYTLDG--GDIINALCFSPNRYWL-CAATGPSIKIWDLEGKII 289 (340)
T ss_dssp ---------------SEEEEEETTCEEEEEETTTTEEEEEEEC--SSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEE
T ss_pred ---------------CEEEEEeCCCeEEEEEeccCceeeeecC--CceEEeeecCCCCcee-eccCCCEEEEEECCCCeE
Confidence 8999999999999999999988887753 5689999999987655 566699999999988776
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
...+...... .....|...|++++|+|||++|++|+.||.| +++..
T Consensus 290 ~~~~~~~~~~----~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v--~iW~~ 335 (340)
T 4aow_A 290 VDELKQEVIS----TSSKAEPPQCTSLAWSADGQTLFAGYTDNLV--RVWQV 335 (340)
T ss_dssp EEEECCC-----------CCCCCEEEEEECTTSSEEEEEETTSCE--EEEEE
T ss_pred EEecccccee----eeccCCCCCEEEEEECCCCCEEEEEeCCCEE--EEEeC
Confidence 6555432211 2334577789999999999999999999999 76653
No 52
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1.1e-34 Score=311.14 Aligned_cols=294 Identities=15% Similarity=0.163 Sum_probs=234.5
Q ss_pred ceeeecCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee--cCCCCcEEEEEEcC-CCCEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL--RDHFGSVNCVRWAK-HGRYIA 82 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~fsp-dg~~La 82 (689)
.+.+|. ..|++++|+|++ ++|++|+.||.|+|||+.. .+....+ .+|.+.|.+++|+| ++++|+
T Consensus 68 ~~~~h~-~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 68 TASPFD-RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDV-----------QNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp EECCCS-SCEEEEEECSSCTTEEEEEEBTSCEEEEETTS-----------TTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred eccCCC-CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCC-----------cccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 345677 599999999999 9999999999999999986 3344444 47999999999999 789999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe---cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR---GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
+++.|+.|++||+... ....+. .|...|.+++|+|++++|++++.|+.|++||+ +++.
T Consensus 136 s~~~d~~i~iwd~~~~------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~ 196 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS------------------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHE 196 (383)
T ss_dssp EEETTTEEEEEETTSC------------------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCE
T ss_pred EEeCCCEEEEEECCCC------------------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCE
Confidence 9999999999999853 333443 34588999999999999999999999999999 6788
Q ss_pred EEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCC----CcceeeccCcccccCCcccEEEEEEcC-CCCeEEEe
Q 040062 160 TAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSD----WSLAHRTDGHWAKSLGSTFFRRLGWSP-CGHFITTT 233 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~ 233 (689)
+..+..|...|.+++|+|+++ +|++++.|+.|++||+++ ...+..+ .+ ...+.+++|+| ++.+|+++
T Consensus 197 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~------~~~v~~~~~s~~~~~~l~~~ 269 (383)
T 3ei3_B 197 IFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PH------EKPVNAAYFNPTDSTKLLTT 269 (383)
T ss_dssp EEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-EC------SSCEEEEEECTTTSCEEEEE
T ss_pred EEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cC------CCceEEEEEcCCCCCEEEEE
Confidence 899999999999999999998 999999999999999987 4444444 22 23489999999 99999998
Q ss_pred cCCCCCccccceeecCCceeeeeecCCC-------CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHN-------APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~-------~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
+. ...+.+|+.........+.+|. ..+. +.|+|++. .....+++++
T Consensus 270 ~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~----------------------~~~~~~s~dg 322 (383)
T 3ei3_B 270 DQ----RNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHPMYD----------------------LIVAGRYPDD 322 (383)
T ss_dssp ES----SSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECSSSS----------------------EEEEECBCCT
T ss_pred cC----CCcEEEEECCCCccccccccccccccccccceE-EeccCCCC----------------------ceEEEecCCc
Confidence 76 3567788887766555554442 3333 34544431 1111123344
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEeccc-CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHF-FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
.+ +++.|+.|++||+.+++.+..+... |...+..++|+|++++|++++ ||.|++||+++
T Consensus 323 ~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 323 QL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp TT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred cc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 55 7889999999999999998888753 456778889999999999997 99999999864
No 53
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.5e-34 Score=299.66 Aligned_cols=256 Identities=23% Similarity=0.351 Sum_probs=212.4
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEEEEeC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIASGSD 86 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~Lasgs~ 86 (689)
.+|. ..|++++|+|+|++||+|+.|+.|+|||+... ..+.+.++.+|.+.|++++|++ ++++|++|+.
T Consensus 6 ~~h~-~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~---------~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~ 75 (297)
T 2pm7_B 6 NAHN-EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE---------THKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY 75 (297)
T ss_dssp CSCS-SCEEEEEECTTSSEEEEEETTSCEEEEEBCSS---------CBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET
T ss_pred cCCc-CceEEEEECCCCCEEEEEeCCCEEEEEecCCC---------CcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC
Confidence 4688 59999999999999999999999999998741 1467788999999999999986 4899999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCe--EEEE
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGI--CTAV 162 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~--~~~~ 162 (689)
|++|+|||+.++. +.....+.+|...|.+++|+|+ +.+|++++.|+.|++||++++. ....
T Consensus 76 D~~v~iWd~~~~~---------------~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~ 140 (297)
T 2pm7_B 76 DGKVMIWKEENGR---------------WSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPII 140 (297)
T ss_dssp TTEEEEEEBSSSC---------------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEE
T ss_pred CCEEEEEEcCCCc---------------eEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeee
Confidence 9999999998652 1244567789999999999998 8899999999999999998753 2456
Q ss_pred EecCCCCeEEEEEccC-------------CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCe
Q 040062 163 LRGHSSLVKGVAWDPI-------------GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHF 229 (689)
Q Consensus 163 l~~h~~~V~~l~~spd-------------g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 229 (689)
+.+|...|.+++|+|+ +++|++++.|++|++||+++......
T Consensus 141 ~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~------------------------- 195 (297)
T 2pm7_B 141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV------------------------- 195 (297)
T ss_dssp EECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEE-------------------------
T ss_pred eecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEE-------------------------
Confidence 7889999999999997 57999999999999999865331110
Q ss_pred EEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE
Q 040062 230 ITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI 309 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 309 (689)
....+.+|...|.+++|+|++. .+.+|
T Consensus 196 -----------------------~~~~l~~H~~~V~~v~~sp~~~------------------------------~~~~l 222 (297)
T 2pm7_B 196 -----------------------LESTLEGHSDWVRDVAWSPTVL------------------------------LRSYM 222 (297)
T ss_dssp -----------------------EEEEECCCSSCEEEEEECCCCS------------------------------SSEEE
T ss_pred -----------------------EEEEecCCCCceEEEEECCCCC------------------------------CceEE
Confidence 1123567999999999999730 13799
Q ss_pred EEEeCCCcEEEEeCCCCCc--eEEec--ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 310 AIGSQDRTITVWTTASPRP--LFVAK--HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 310 asgs~Dg~I~iwd~~~~~~--~~~~~--~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++++.|++|+|||++.... ..... ..|...|.+++|+|+|++|++++.||.|++|+..
T Consensus 223 as~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 223 ASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9999999999999987532 22222 3567889999999999999999999999999976
No 54
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.8e-35 Score=310.23 Aligned_cols=291 Identities=19% Similarity=0.310 Sum_probs=235.5
Q ss_pred eecCceEEEEEEcCC----CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-----CCCCcEEEEEEcCC---
Q 040062 10 RHEGMQIFSIDVQPG----ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-----DHFGSVNCVRWAKH--- 77 (689)
Q Consensus 10 ~H~g~~I~si~~spd----g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~fspd--- 77 (689)
+|. .+|++++|+|+ ...+++++.++.|+|||+.. .+.+..+. .|.+.|++++|+|+
T Consensus 16 ~h~-~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~-----------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 83 (366)
T 3k26_A 16 DHN-QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHS-----------QGEIRLLQSYVDADADENFYTCAWTYDSNT 83 (366)
T ss_dssp TTC-SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECG-----------GGCEEEEEEEECSCTTCCEEEEEEEECTTT
T ss_pred CCC-CceEEEEEecccCCCCceEEEECCCCEEEEEEcCC-----------CcEEEeeeeccccCCCCcEEEEEeccCCCC
Confidence 477 69999999984 45666666678999999986 34444443 26688999999998
Q ss_pred -CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcC
Q 040062 78 -GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 78 -g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~ 155 (689)
+++|++|+.||.|++||+.++ +....+.+|...|.+++|+| ++.+|++++.|+.|++||+.
T Consensus 84 ~~~~l~~~~~dg~i~v~d~~~~-----------------~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~ 146 (366)
T 3k26_A 84 SHPLLAVAGSRGIIRIINPITM-----------------QCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146 (366)
T ss_dssp CCEEEEEEETTCEEEEECTTTC-----------------CEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETT
T ss_pred CCCEEEEecCCCEEEEEEchhc-----------------eEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEee
Confidence 679999999999999999877 57788889999999999999 89999999999999999999
Q ss_pred CCeEEEEE---ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc----------------------c
Q 040062 156 TGICTAVL---RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW----------------------A 210 (689)
Q Consensus 156 ~~~~~~~l---~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~----------------------~ 210 (689)
+++.+..+ ..|...|.+++|+|++++|++++.|+.|++||+++++....+.... .
T Consensus 147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (366)
T 3k26_A 147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFST 226 (366)
T ss_dssp TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEE
T ss_pred cCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccc
Confidence 99999998 6899999999999999999999999999999999876655443200 0
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee--------------eeeecCCCCCEEEEEEcCCcccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA--------------TFDFLGHNAPIIVVKFNHSMFRR 276 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~--------------~~~l~~h~~~v~~v~fsp~~~~~ 276 (689)
.......+.++.|+ +.++++++. ...+.+|+...... ...+..|...|.+++|+|+.
T Consensus 227 ~~~~~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--- 297 (366)
T 3k26_A 227 RDIHRNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDF--- 297 (366)
T ss_dssp CSSCSSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECT---
T ss_pred ccCCcceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCC---
Confidence 00023448889998 778888765 45577887665433 45566777777777777761
Q ss_pred ccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE----EecccC--CCCeEEEEEccCCC
Q 040062 277 NSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF----VAKHFF--TQSVVDLSWSPDGY 350 (689)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~----~~~~~h--~~~V~~l~~spdg~ 350 (689)
++.+|++|+.||.|++||+.++++.. .+. .| ...|++++|+|+++
T Consensus 298 ----------------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~ 348 (366)
T 3k26_A 298 ----------------------------WQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSS 348 (366)
T ss_dssp ----------------------------TSSEEEEECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSS
T ss_pred ----------------------------CCcEEEEEecCCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCC
Confidence 24899999999999999999886532 333 34 68999999999999
Q ss_pred eEEEEeCCCcEEEEEee
Q 040062 351 SLFACSLDGTVANFHFE 367 (689)
Q Consensus 351 ~L~sgs~DG~I~vwd~~ 367 (689)
+|++++.||.|++||+.
T Consensus 349 ~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp EEEEEETTSEEEEEEC-
T ss_pred eEEEEeCCCEEEEEEec
Confidence 99999999999999985
No 55
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.1e-34 Score=306.60 Aligned_cols=289 Identities=16% Similarity=0.224 Sum_probs=232.4
Q ss_pred eeecCceEEEEEEcCCCCEEE-EEeC---CCeEEEEeCCcCCCCCCCCcccceeee-eecCCCCcEEEEEEcCC---CCE
Q 040062 9 VRHEGMQIFSIDVQPGALRFA-TGGG---DHKVRIWNMKSVGKNFENDESTQRLLA-TLRDHFGSVNCVRWAKH---GRY 80 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~La-tgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~v~fspd---g~~ 80 (689)
.+|. ..|++++|+|++.+|+ +|+. ||.|+|||+.. .+... ...+|...|.+++|+|+ +++
T Consensus 15 ~~h~-~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~-----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 82 (357)
T 3i2n_A 15 KGFN-YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQH-----------GDLKLLREIEKAKPIKCGTFGATSLQQRY 82 (357)
T ss_dssp EECS-SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECS-----------SSEEEEEEEEESSCEEEEECTTCCTTTCC
T ss_pred cCCC-CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCC-----------CcccceeeecccCcEEEEEEcCCCCCCce
Confidence 3466 6999999999996554 5554 89999999986 33322 23368999999999998 799
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE------cCCCCEEEEEeCCCeEEEEEc
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW------SPDDSILASGSLDNTIHIWNM 154 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~------spdg~~Lasgs~Dg~I~vwd~ 154 (689)
|++++.||.|++||+.++. .....+.+|...|.+++| ++++++|++++.|+.|++||+
T Consensus 83 l~~~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~ 146 (357)
T 3i2n_A 83 LATGDFGGNLHIWNLEAPE----------------MPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDP 146 (357)
T ss_dssp EEEEETTSCEEEECTTSCS----------------SCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECT
T ss_pred EEEecCCCeEEEEeCCCCC----------------ccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeC
Confidence 9999999999999998763 145667889999999955 688999999999999999999
Q ss_pred CCCe-EEEEEecCCC----CeEEEE----EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 155 STGI-CTAVLRGHSS----LVKGVA----WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 155 ~~~~-~~~~l~~h~~----~V~~l~----~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
.+++ .+..+..|.. .|.+++ |+|++++|++++.|+.|++||+++++....... ...+.+++|+|
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~v~~~~~~~ 219 (357)
T 3i2n_A 147 RQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNI-------KNGVCSLEFDR 219 (357)
T ss_dssp TSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEESC
T ss_pred CCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCC-------CCceEEEEcCC
Confidence 9887 6777776655 889998 788999999999999999999999877544322 23389999999
Q ss_pred ---CCCeEEEecCCCCCccccceeecCCceeeeee-----cCCCCCEEEEEEcCCccccccccccccccccccccCCccc
Q 040062 226 ---CGHFITTTHGFQKPRHSAPVLERGEWAATFDF-----LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSK 297 (689)
Q Consensus 226 ---dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-----~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (689)
++.++++++.+ ..+.+|+.........+ .+|...|.+++|+|++
T Consensus 220 ~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------------------ 271 (357)
T 3i2n_A 220 KDISMNKLVATSLE----GKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQN------------------------ 271 (357)
T ss_dssp SSSSCCEEEEEEST----TEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTE------------------------
T ss_pred CCCCCCEEEEECCC----CeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCC------------------------
Confidence 99999998663 45667876554443333 3899999999999986
Q ss_pred ccCccCCCCc-EEEEEeCCCcEEEEeCCCCCc-------------------eEEecccCCCCeEEEEEccCCCeEE-EEe
Q 040062 298 IGGKESQPYN-VIAIGSQDRTITVWTTASPRP-------------------LFVAKHFFTQSVVDLSWSPDGYSLF-ACS 356 (689)
Q Consensus 298 ~~~~~s~~~~-~lasgs~Dg~I~iwd~~~~~~-------------------~~~~~~~h~~~V~~l~~spdg~~L~-sgs 356 (689)
. +|++++.||.|++||++.+.. +..+ ..|...|++++|+|++++|+ +++
T Consensus 272 ---------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~s~~ 341 (357)
T 3i2n_A 272 ---------RELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNV-TLSTQPISSLDWSPDKRGLCVCSS 341 (357)
T ss_dssp ---------EEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEE-ECCSSCEEEEEECSSSTTEEEEEE
T ss_pred ---------CcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecc-ccCCCCeeEEEEcCCCCeEEEEec
Confidence 5 899999999999999986532 2333 35788999999999999998 799
Q ss_pred CCCcEEEEEeeccc
Q 040062 357 LDGTVANFHFEVKE 370 (689)
Q Consensus 357 ~DG~I~vwd~~~~~ 370 (689)
.||.|++||+.+.+
T Consensus 342 ~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 342 FDQTVRVLIVTKLN 355 (357)
T ss_dssp TTSEEEEEEECC--
T ss_pred CCCcEEEEECCCcc
Confidence 99999999997654
No 56
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=293.28 Aligned_cols=289 Identities=20% Similarity=0.266 Sum_probs=248.5
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+.+|. ..|++++| +++++|++|+.||.|+|||+.. .+....+..|.+.|.+++|+|++++|++++.
T Consensus 13 ~l~~h~-~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 79 (313)
T 3odt_A 13 TLKGHD-QDVRDVVA-VDDSKVASVSRDGTVRLWSKDD-----------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGK 79 (313)
T ss_dssp EECCCS-SCEEEEEE-EETTEEEEEETTSEEEEEEESS-----------SEEEEEEEECSSCEEEEEEETTTTEEEEEET
T ss_pred HhhCCC-CCcEEEEe-cCCCEEEEEEcCCcEEEEECCC-----------CEEEEEeecCCccEEEEEECCCCCEEEEecC
Confidence 456788 59999999 9999999999999999999986 6778888899999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
|+.|++|++..... .+....+.+|...|.+++| ++.+|++++.|+.|++|| .++.+..+..|
T Consensus 80 dg~i~~~~~~~~~~--------------~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~ 141 (313)
T 3odt_A 80 DTMINGVPLFATSG--------------EDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAH 141 (313)
T ss_dssp TSCEEEEETTCCTT--------------SCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECC
T ss_pred CCeEEEEEeeecCC--------------CCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccC
Confidence 99999999976531 1345667889999999999 578999999999999999 78888899999
Q ss_pred CCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 167 SSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 167 ~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
...|.+++|+| ++++|++++.|+.|++||. .+....+... ....+.+++|+|++. +++++. ...+.+
T Consensus 142 ~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~~-----~~~~i~~~~~~~~~~-~~~~~~----dg~i~i 209 (313)
T 3odt_A 142 NASVWDAKVVSFSENKFLTASADKTIKLWQN--DKVIKTFSGI-----HNDVVRHLAVVDDGH-FISCSN----DGLIKL 209 (313)
T ss_dssp SSCEEEEEEEETTTTEEEEEETTSCEEEEET--TEEEEEECSS-----CSSCEEEEEEEETTE-EEEEET----TSEEEE
T ss_pred CCceeEEEEccCCCCEEEEEECCCCEEEEec--CceEEEEecc-----CcccEEEEEEcCCCe-EEEccC----CCeEEE
Confidence 99999999999 8999999999999999994 3444444431 123489999999999 666554 356889
Q ss_pred eecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 246 LERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 246 ~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
|+.........+.+|...+.+++|+|++ .|++++.|+.|++||+.+
T Consensus 210 ~d~~~~~~~~~~~~~~~~i~~~~~~~~~----------------------------------~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 210 VDMHTGDVLRTYEGHESFVYCIKLLPNG----------------------------------DIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECTTS----------------------------------CEEEEETTSEEEEECTTT
T ss_pred EECCchhhhhhhhcCCceEEEEEEecCC----------------------------------CEEEEecCCEEEEEECCC
Confidence 9998888888899999999999999985 488999999999999999
Q ss_pred CCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 326 PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 326 ~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
++.+..+. .|...|.+++|+|+++ |++++.||.|++|+++++++...
T Consensus 256 ~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 256 GSLKQVIT-LPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp CCEEEEEE-CSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred CceeEEEe-ccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence 99888775 4678999999999998 66799999999999998876543
No 57
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.5e-35 Score=322.50 Aligned_cols=306 Identities=16% Similarity=0.147 Sum_probs=230.7
Q ss_pred eeeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs 85 (689)
...|. ..|+||+|+| ++++||+|+.||.|+|||+... .......+.+|.+.|++|+|+| ++++|++|+
T Consensus 115 ~~~~~-~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~---------~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s 184 (435)
T 4e54_B 115 AAPFD-RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIK---------DKPTFIKGIGAGGSITGLKFNPLNTNQFYASS 184 (435)
T ss_dssp EEECS-SCEEEEEECSSCTTCEEEEETTSCEEEECSSCC---------SCCEEECCCSSSCCCCEEEECSSCTTEEEEEC
T ss_pred CCCCC-CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCC---------CceeEEEccCCCCCEEEEEEeCCCCCEEEEEe
Confidence 44566 5899999999 5679999999999999999761 1344556678999999999998 789999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL--RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
.||+|+|||++++ ...... ..+...+.+++|++++.+|++|+.||.|++||++ ++.+..+
T Consensus 185 ~D~~v~iwd~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~ 246 (435)
T 4e54_B 185 MEGTTRLQDFKGN-----------------ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNL 246 (435)
T ss_dssp SSSCEEEEETTSC-----------------EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCS
T ss_pred CCCEEEEeeccCC-----------------ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEE
Confidence 9999999999764 222222 2334567899999999999999999999999986 4566778
Q ss_pred ecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 164 RGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.+|...|.+++|+|++. +|++++.|++|+|||+++.+....+.... .....|.+++|+|+|++|++++. ...
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~---~h~~~v~~~~~spdg~~l~s~~~----D~~ 319 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL---PHRHPVNAACFSPDGARLLTTDQ----KSE 319 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC---BCSSCEEECCBCTTSSEEEEEES----SSC
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee---eccccccceeECCCCCeeEEEcC----CCE
Confidence 89999999999999875 78899999999999998876554432211 11334899999999999999876 456
Q ss_pred cceeecCCceeeeeecCCCCC------EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE-EEeCC
Q 040062 243 APVLERGEWAATFDFLGHNAP------IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQD 315 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~------v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~D 315 (689)
+.+|+...+.....+..|... ...+.|++.+..+ ....++++.+++ ++..+
T Consensus 320 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~d~~~~~~~~~~~ 377 (435)
T 4e54_B 320 IRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLI----------------------VVGRYPDPNFKSCTPYEL 377 (435)
T ss_dssp EEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCE----------------------EEECCCCTTSCCSSTTCC
T ss_pred EEEEECCCCccceEEecccccccccceeEEEEEcCCCCEE----------------------EEEEcCCCCeEEEEecCC
Confidence 779998887777666665432 2233444443110 001111222222 22345
Q ss_pred CcEEEEeCCCCCceEEecccCCCCeEEE-EEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 316 RTITVWTTASPRPLFVAKHFFTQSVVDL-SWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 316 g~I~iwd~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
+.|++||..+++.+..+...|...|.++ +|+|+|++|++|+ |+.|+||++++++.
T Consensus 378 ~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 378 RTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp CCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred CEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 6899999999999998888888889887 6999999999877 88999999987754
No 58
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=317.75 Aligned_cols=283 Identities=16% Similarity=0.267 Sum_probs=225.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccc--eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQ--RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~--~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
.+|++++|+|++++||+|+.|+.|+|||+.. . +.+..+.+|.+.|++++|+|++++|++++.|+.|+
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~-----------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~ 80 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDG-----------NGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY 80 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEET-----------TEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccC-----------CceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence 5899999999999999999999999999986 4 77888999999999999999999999999999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe---EEEEEec-CC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI---CTAVLRG-HS 167 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~---~~~~l~~-h~ 167 (689)
+||+.++. .+.....+..|...|.+++|+|++++|++++.|+.|++||+++++ ....+.. |.
T Consensus 81 vwd~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~ 146 (377)
T 3dwl_C 81 VYEKRPDG--------------TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLR 146 (377)
T ss_dssp EC--------------------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCC
T ss_pred EEEcCCCC--------------ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccC
Confidence 99998762 123566778899999999999999999999999999999999877 4777877 99
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc------------------ceeeccCcccccCCcccEEEEEEcCCCCe
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS------------------LAHRTDGHWAKSLGSTFFRRLGWSPCGHF 229 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~------------------~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 229 (689)
..|.+++|+|++++|++++.|+.|++||++... +...+ . ....+.+++|+|++++
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P------SGGWVHAVGFSPSGNA 219 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C------CSSSEEEEEECTTSSC
T ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c------CCceEEEEEECCCCCE
Confidence 999999999999999999999999999986432 22222 2 2334899999999999
Q ss_pred EEEecCCCCCccccceeecCCcee----eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 230 ITTTHGFQKPRHSAPVLERGEWAA----TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
|++++.+ ..+.+|+...... ...+.+|...|.+++|+|++
T Consensus 220 l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-------------------------------- 263 (377)
T 3dwl_C 220 LAYAGHD----SSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANES-------------------------------- 263 (377)
T ss_dssp EEEEETT----TEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETT--------------------------------
T ss_pred EEEEeCC----CcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCC--------------------------------
Confidence 9998763 5677888877766 67788999999999999986
Q ss_pred CcEEEEEeCCCcEEEEeCCCCC-c--------------------------------------------------eEEecc
Q 040062 306 YNVIAIGSQDRTITVWTTASPR-P--------------------------------------------------LFVAKH 334 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~~-~--------------------------------------------------~~~~~~ 334 (689)
.+|++|+.++.+ +|+..... . ...+..
T Consensus 264 -~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 341 (377)
T 3dwl_C 264 -AIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPT 341 (377)
T ss_dssp -EEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSS
T ss_pred -CEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCc
Confidence 678887766555 66654211 0 000112
Q ss_pred cCCCCeEEEEEccCC-C---eEEEEeCCCcEEEEEe
Q 040062 335 FFTQSVVDLSWSPDG-Y---SLFACSLDGTVANFHF 366 (689)
Q Consensus 335 ~h~~~V~~l~~spdg-~---~L~sgs~DG~I~vwd~ 366 (689)
.|...|+++++.++. . .|++|+.||.|++||+
T Consensus 342 ~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 342 VHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 388899999977644 3 5999999999999985
No 59
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-35 Score=346.14 Aligned_cols=378 Identities=8% Similarity=0.044 Sum_probs=260.2
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.|. .+|.+++|+| |++|++++.|+.|+|||+.+ ++.+..+. |.+.|++++|+|++++|++|+.||.
T Consensus 56 ~~~-~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~-----------~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~ 121 (902)
T 2oaj_A 56 EDR-SAIKEMRFVK-GIYLVVINAKDTVYVLSLYS-----------QKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGS 121 (902)
T ss_dssp SSC-CCEEEEEEET-TTEEEEEETTCEEEEEETTT-----------CSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSC
T ss_pred CCC-CCEEEEEEcC-CCEEEEEECcCeEEEEECCC-----------CcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCc
Confidence 355 5899999999 88999999999999999986 56777775 7789999999999999999999999
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecC--
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGH-- 166 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h-- 166 (689)
|++||+.++... .+... ..|.....+.+|...|.+++|+|+ +.+|++++.|+.| +||+++++.+..+..|
T Consensus 122 V~lwd~~~~~~~-~~~i~-----~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~ 194 (902)
T 2oaj_A 122 MIVYDIDRDQLS-SFKLD-----NLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELP 194 (902)
T ss_dssp EEEEETTTTEEE-EEEEC-----CHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBC
T ss_pred EEEEECCCCccc-cceec-----cccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccC
Confidence 999999876210 00000 000000234679999999999996 4689999999999 9999999999888766
Q ss_pred ----------------CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceee--cc---Ccccc-------cCCcccE
Q 040062 167 ----------------SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR--TD---GHWAK-------SLGSTFF 218 (689)
Q Consensus 167 ----------------~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~--~~---~~~~~-------~~~~~~i 218 (689)
...|.+++|+|+|++|++++.|++|++||+++++++.. +. .+... ......|
T Consensus 195 ~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V 274 (902)
T 2oaj_A 195 PFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKI 274 (902)
T ss_dssp TTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEE
T ss_pred CcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCe
Confidence 57799999999999999999999999999999877653 21 11100 0112358
Q ss_pred EEEEEc----CCCCe-EEEecCCCC-Cccccceee---------------------------------------------
Q 040062 219 RRLGWS----PCGHF-ITTTHGFQK-PRHSAPVLE--------------------------------------------- 247 (689)
Q Consensus 219 ~~l~~s----pdg~~-l~~~~~~~~-~~~~~~i~~--------------------------------------------- 247 (689)
.+++|+ |++.. +++++.+.. ....+.+|+
T Consensus 275 ~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 354 (902)
T 2oaj_A 275 SKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQ 354 (902)
T ss_dssp EEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSS
T ss_pred eEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCC
Confidence 999995 55434 444422211 001111221
Q ss_pred --------------------------cCCceee-------eeecCCCCCEEEEEEc------------------------
Q 040062 248 --------------------------RGEWAAT-------FDFLGHNAPIIVVKFN------------------------ 270 (689)
Q Consensus 248 --------------------------~~~~~~~-------~~l~~h~~~v~~v~fs------------------------ 270 (689)
....... ..+..|...|++++|+
T Consensus 355 sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~ 434 (902)
T 2oaj_A 355 SPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGG 434 (902)
T ss_dssp CSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCS
T ss_pred CCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCC
Confidence 1000000 0012233445544442
Q ss_pred ----------CCccccccccccccccccccccC-----------------------CcccccCccCCCCcEEEEEeCCCc
Q 040062 271 ----------HSMFRRNSASSQEVKAAPVGWTN-----------------------GTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 271 ----------p~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
|++..+..... ......|+. ...+....+++++++||+|+.||+
T Consensus 435 ~~~v~sv~~spdg~~laSgs~---DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt 511 (902)
T 2oaj_A 435 VRTKRQKLPAEYGTAFITGHS---NGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD 511 (902)
T ss_dssp BCCCCCCCCCSEEEEEEEEET---TSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC
T ss_pred cCCCCcccccccCcEEEEecC---CCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE
Confidence 22211111100 011112221 112333456889999999999999
Q ss_pred EEEEeCCCCC---------------------------------------------ceEEecccCCCCeEEEEEccCCCeE
Q 040062 318 ITVWTTASPR---------------------------------------------PLFVAKHFFTQSVVDLSWSPDGYSL 352 (689)
Q Consensus 318 I~iwd~~~~~---------------------------------------------~~~~~~~~h~~~V~~l~~spdg~~L 352 (689)
|+|||+.+++ ++..+ ..|.+.|++++||||| +|
T Consensus 512 V~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l-~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 512 VVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV-HANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp EEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE-CCCSCSEEEEEECBTS-EE
T ss_pred EEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE-EcCCCcEEEEEecCCc-EE
Confidence 9999998663 13333 3589999999999999 99
Q ss_pred EEEeCCCcEEEEEeeccccccccChHHHHHHHHhccC-CccCceeeeecC-----chh---hhhHhhccccceeeeeeec
Q 040062 353 FACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYG-DVRGRLANLAET-----PAQ---LLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 353 ~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g-~~~~~I~~l~~S-----pdg---~~Las~s~DG~v~~~~~~~ 423 (689)
++|+.|++|++||+++..+...... ..+. .|.+.|++++|| ||| ++|++|+.||+| +++.+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~--------~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv--~~wd~ 659 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENI--------REISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEV--ITYKI 659 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEG--------GGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEE--EEEEE
T ss_pred EEEeCCCcEEEEECCCCeEEEEeeh--------hHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcE--EEEEE
Confidence 9999999999999987665432110 2233 688899999999 885 999999999999 77765
No 60
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-34 Score=309.89 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=247.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|++++|+|++++|++|+.||.|+|||.. ++.+..+..|...|.+++|+|++++|++++.|+.|++|
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWNKT------------GALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILW 176 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEETT------------SCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEeCC------------CCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEE
Confidence 599999999999999999999999999943 57788899999999999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCC---------------EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD---------------VVDLNWSPDDSILASGSLDNTIHIWNMSTGI 158 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~---------------V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~ 158 (689)
|+.++ +....+..|... +.+++|++++ .+++++.|+.|++||+.+++
T Consensus 177 d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~ 238 (425)
T 1r5m_A 177 NVISG-----------------TVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKT 238 (425)
T ss_dssp ETTTT-----------------EEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSS
T ss_pred ECCCC-----------------cEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCc
Confidence 99887 566666666655 9999999875 68899999999999999999
Q ss_pred EEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
.+..+..|...|.+++|+|++++|++++.|+.|++||+++++....+..+.. .+.++.|+|++ ++++++.
T Consensus 239 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~------~i~~~~~~~~~-~l~~~~~--- 308 (425)
T 1r5m_A 239 PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQ------SIVSASWVGDD-KVISCSM--- 308 (425)
T ss_dssp CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSS------CEEEEEEETTT-EEEEEET---
T ss_pred eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCc------cEEEEEECCCC-EEEEEeC---
Confidence 9999999999999999999999999999999999999999888887765543 38999999999 7777765
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTI 318 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I 318 (689)
...+.+|+.........+..|...+.+++|+|++ ++|++++.||.|
T Consensus 309 -d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~---------------------------------~~l~~~~~dg~i 354 (425)
T 1r5m_A 309 -DGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDG---------------------------------QKYAVAFMDGQV 354 (425)
T ss_dssp -TSEEEEEETTTTEEEEEEECTTCCEEEEEECTTS---------------------------------SEEEEEETTSCE
T ss_pred -CCcEEEEECCCCcEeEecccCCccEEEEEEcCCC---------------------------------CEEEEEECCCeE
Confidence 3577899998888888888999999999999986 899999999999
Q ss_pred EEEeCCCCC--------------------ceEEecccCCC--CeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 319 TVWTTASPR--------------------PLFVAKHFFTQ--SVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 319 ~iwd~~~~~--------------------~~~~~~~~h~~--~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
++||+.+++ .+..+.. |.. .|++++|+|++++|++++.||.|++|+++
T Consensus 355 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 355 NVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQS-SQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECHHHHC--------------CEECCEEEEECC-TTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCCccceeeeecccccccCcccchhhhhhcC-cccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999998877 6666654 544 99999999999999999999999999985
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=7.5e-34 Score=323.34 Aligned_cols=328 Identities=14% Similarity=0.194 Sum_probs=278.3
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccc----eeeeeecCCCCc-EEEEEEcC--CCCEEE
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQ----RLLATLRDHFGS-VNCVRWAK--HGRYIA 82 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~----~~~~~l~~h~~~-V~~v~fsp--dg~~La 82 (689)
.|. ..|.+++|+|+|++|++++ ++.|+|||+.+ + +....+.+|.+. |++++|+| ++++|+
T Consensus 16 ~~~-~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~-----------~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 16 TQR-NFTTHLSYDPTTNAIAYPC-GKSAFVRCLDD-----------GDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CCT-TCCCCCEEETTTTEEEEEE-TTEEEEEECCS-----------SCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEE
T ss_pred Ccc-CceeEEEECCCCCEEEEec-CCeEEEEECCC-----------CCCccccceEEecCCCceEEEEEECcCCCCCEEE
Confidence 566 5899999999999999998 78999999986 4 678889999999 99999999 999999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCe
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD----NTIHIWNMSTGI 158 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D----g~I~vwd~~~~~ 158 (689)
+++.||.|++||+.++..... ........+..|...|.+++|+|++++|++++.+ +.|++|| .++
T Consensus 83 s~~~dg~v~vw~~~~~~~~~~---------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~ 151 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESNS---------VEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGN 151 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGTE---------EEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCC
T ss_pred EecCCCEEEEEeCCCCccccc---------ccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCC
Confidence 999999999999964310000 0115677888899999999999999999999988 6888888 677
Q ss_pred EEEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC-CCeEEEecCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC-GHFITTTHGF 236 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~~~~~~ 236 (689)
.+..+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++....+..+... ...+.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ---GSFVRDVEFSPDSGEFVITVGS- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT---TCCEEEEEECSTTCCEEEEEET-
T ss_pred cceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCC---CceEEEEEECCCCCCEEEEEeC-
Confidence 8889999999999999999997 8999999999999999999988888765440 114899999999 999998876
Q ss_pred CCCccccceeecCCceeeeee-c---CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 237 QKPRHSAPVLERGEWAATFDF-L---GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l-~---~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
...+.+|+.........+ . .|...|.++.|+ ++ .+|+++
T Consensus 228 ---dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~---------------------------------~~l~~~ 270 (615)
T 1pgu_A 228 ---DRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DS---------------------------------QKFATV 270 (615)
T ss_dssp ---TCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SS---------------------------------SEEEEE
T ss_pred ---CCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CC---------------------------------CEEEEE
Confidence 356789998887777777 5 899999999998 65 799999
Q ss_pred eCCCcEEEEeCCCCCceEEeccc---CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccC
Q 040062 313 SQDRTITVWTTASPRPLFVAKHF---FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYG 389 (689)
Q Consensus 313 s~Dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g 389 (689)
+.|+.|++||+.+++.+..+... +...+.++.|+ ++.+|++++.||.|++||+.+++... .+.
T Consensus 271 ~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~-------------~~~ 336 (615)
T 1pgu_A 271 GADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLK-------------TIS 336 (615)
T ss_dssp ETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEE-------------EEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEE-------------EEe
Confidence 99999999999999888776643 24678889986 89999999999999999998876653 333
Q ss_pred CccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 390 DVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 390 ~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.|.+.|.+++| |+ |++++.||.| +++.
T Consensus 337 ~~~~~v~~~~~-~~---l~~~~~dg~i--~~w~ 363 (615)
T 1pgu_A 337 GHNKGITALTV-NP---LISGSYDGRI--MEWS 363 (615)
T ss_dssp CCSSCEEEEET-TT---TEEEETTSCE--EETT
T ss_pred CCCCCEEEEEe-cC---cEEECCCCeE--EEEE
Confidence 57778999999 88 9999999998 5543
No 62
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-33 Score=298.86 Aligned_cols=297 Identities=18% Similarity=0.197 Sum_probs=255.8
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
......+.+|.+.|++++|+|++++|++++.||.|++||+.++ +....+.+|...|.+++|+|
T Consensus 22 ~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------------~~~~~~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------------ERLGTLDGHTGTIWSIDVDC 84 (369)
T ss_dssp SEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------------CEEEEECCCSSCEEEEEECT
T ss_pred ccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------------hhhhhhhhcCCcEEEEEEcC
Confidence 4555668899999999999999999999999999999999887 67788899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcceeeccCccc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~~~~~~~~~~~ 210 (689)
++++|++++.|+.|++||+.+++.+..+. |...|.+++|+|++++|++++.+ +.|++||+........+.....
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~ 163 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSE 163 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECS
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeeccccc
Confidence 99999999999999999999999999988 88999999999999999999999 9999999977654332221110
Q ss_pred -------ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC-ceeeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 211 -------KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE-WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 211 -------~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
.......+.+++|+|++++++++.. ...+.+|+... ......+..|...|.+++|+|++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--------- 230 (369)
T 3zwl_B 164 EPIHKIITHEGLDAATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDL--------- 230 (369)
T ss_dssp SCSEEEECCTTCCCEEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTS---------
T ss_pred ceeeeccCCcCccceeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCCceeEEEECCCC---------
Confidence 0011125899999999999999866 35677999887 67777888999999999999986
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC---
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG--- 359 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG--- 359 (689)
.+|++++.|+.|++||+.+++.+..+. +...+.+++|+|++++|++++.++
T Consensus 231 ------------------------~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~ 284 (369)
T 3zwl_B 231 ------------------------TYFITSSRDTNSFLVDVSTLQVLKKYE--TDCPLNTAVITPLKEFIILGGGQEAKD 284 (369)
T ss_dssp ------------------------SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECCC---
T ss_pred ------------------------CEEEEecCCceEEEEECCCCceeeeec--CCCCceeEEecCCCceEEEeecCCCce
Confidence 899999999999999999999888776 578899999999999999999988
Q ss_pred -----------cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 360 -----------TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 360 -----------~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.+++||+.+++... .+..|.+.|.+++|+|++.+|++++.||.| +++...
T Consensus 285 ~~~~~~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v--~iw~~~ 345 (369)
T 3zwl_B 285 VTTTSANEGKFEARFYHKIFEEEIG-------------RVQGHFGPLNTVAISPQGTSYASGGEDGFI--RLHHFE 345 (369)
T ss_dssp ----------CEEEEEETTTCCEEE-------------EEECCSSCEEEEEECTTSSEEEEEETTSEE--EEEEEC
T ss_pred EEEEecCCCcceeEEEecCCCcchh-------------heecccCcEEEEEECCCCCEEEEEcCCCeE--EEEECc
Confidence 89999988877653 334577789999999999999999999999 666543
No 63
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-34 Score=317.28 Aligned_cols=309 Identities=15% Similarity=0.142 Sum_probs=236.5
Q ss_pred eecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 10 RHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 10 ~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
+|. ..|++++|+| ++++|++|+.||.|+|||+...... ...+....+ .|.+.|++++|+|++++|++++.||
T Consensus 61 ~h~-~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~dg 133 (437)
T 3gre_A 61 NEP-NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----EVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKDG 133 (437)
T ss_dssp TTT-SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----CCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETTS
T ss_pred CCC-CceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----cccceeeec-cCCCCEEEEEEeCCCCEEEEEeCCC
Confidence 455 5999999999 9999999999999999998751100 001122333 4999999999999999999999999
Q ss_pred eEEEEEcC---CCCCccccCCCCCCCcccceEEEEEe--c--CCCCEEEEE--EcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 89 VILIHEKK---PGSGTTEFGSGEPPDIENWKVAMTLR--G--HTADVVDLN--WSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 89 ~I~iwdl~---~~~~~~~~~~~~~~~~~~~~~~~~l~--~--h~~~V~~l~--~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
.|++||+. .+.....+ ....+..+. . +...+.++. +++++.+|++++.|+.|++||+++++.
T Consensus 134 ~i~vwd~~~~~~~~~~~~~---------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~ 204 (437)
T 3gre_A 134 QIIVLKVNHYQQESEVKFL---------NCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLER 204 (437)
T ss_dssp EEEEEEEEEEEETTEEEEE---------EEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCE
T ss_pred EEEEEEeccccCCceeecc---------ccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCee
Confidence 99999995 33211100 011222222 2 556788887 668899999999999999999999999
Q ss_pred EEEEec--CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 160 TAVLRG--HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 160 ~~~l~~--h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
+..+.. |...|.+++|+|++++|++++.||.|++||+++++.+..+..
T Consensus 205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------ 254 (437)
T 3gre_A 205 LQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSF------------------------------ 254 (437)
T ss_dssp EEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBC------------------------------
T ss_pred eEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEec------------------------------
Confidence 999998 899999999999999999999999999999987655443321
Q ss_pred CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT 317 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~ 317 (689)
.|...|.+++|+|.. ++++.+|++|+.|+.
T Consensus 255 ---------------------~~~~~v~~~~~~~~~-----------------------------s~~~~~l~s~~~dg~ 284 (437)
T 3gre_A 255 ---------------------GDHAPITHVEVCQFY-----------------------------GKNSVIVVGGSSKTF 284 (437)
T ss_dssp ---------------------TTCEEEEEEEECTTT-----------------------------CTTEEEEEEESTTEE
T ss_pred ---------------------CCCCceEEEEecccc-----------------------------CCCccEEEEEcCCCc
Confidence 345567788777652 335589999999999
Q ss_pred EEEEeCCCCCceEEeccc-------------------------CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 318 ITVWTTASPRPLFVAKHF-------------------------FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 318 I~iwd~~~~~~~~~~~~~-------------------------h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
|++||+++++.+..+... |...|++++|+ ++++|++++.||.|++||+.+++..
T Consensus 285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~ 363 (437)
T 3gre_A 285 LTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSS 363 (437)
T ss_dssp EEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGC
T ss_pred EEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccc
Confidence 999999998877666522 56679999999 8899999999999999999988866
Q ss_pred cccChH-------------------------HHHHHHHhccCCccCceeeeecCch--hhhhHhhccccce
Q 040062 373 HRLSDA-------------------------ELDELKRSRYGDVRGRLANLAETPA--QLLLEAASAKETT 416 (689)
Q Consensus 373 ~~l~~~-------------------------~~~~~~~~~~g~~~~~I~~l~~Spd--g~~Las~s~DG~v 416 (689)
..+... ...... .....|.+.|++++|+++ +.+|++++.||.|
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I 433 (437)
T 3gre_A 364 KAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSV-DDSLYHHDIINSISTCEVDETPLLVACDNSGLI 433 (437)
T ss_dssp EEEECC--CCCEEEEEEEETTEEEEEEECC--------------CCCEEEEEEEESSSSEEEEEEETTSCE
T ss_pred eEEecccccCceEEEEEeecceEEEEEeccccccccc-CcccccccceeeEeeeccCCceEEEEEcCCceE
Confidence 544321 111111 222347889999999998 8899999999999
No 64
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-35 Score=328.76 Aligned_cols=335 Identities=11% Similarity=0.064 Sum_probs=243.3
Q ss_pred cCceEEEEEEcCCC---------CEEEEE-------------------eCCCeEEEEeCCcCCCCCCCCcccceeeeeec
Q 040062 12 EGMQIFSIDVQPGA---------LRFATG-------------------GGDHKVRIWNMKSVGKNFENDESTQRLLATLR 63 (689)
Q Consensus 12 ~g~~I~si~~spdg---------~~Latg-------------------s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~ 63 (689)
.+..|++|+|+|++ ++||+| +.|+.|+|||+..... .......+.
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~-------~~~~~~~l~ 204 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTL-------HCVKVQTIV 204 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTC-------CEEEEEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCC-------CceEEEEEE
Confidence 34689999999986 677764 4688999999875110 011234567
Q ss_pred CCCCcEEEEEEcCC------CCEEEEEeCCCeEEEEEcCCCCCcc--ccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 64 DHFGSVNCVRWAKH------GRYIASGSDDQVILIHEKKPGSGTT--EFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 64 ~h~~~V~~v~fspd------g~~Lasgs~Dg~I~iwdl~~~~~~~--~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
+|.+.|.+++|+|+ +.+||+++.||+|+|||+..+.... .+. .-.....+.+|...|++++|++
T Consensus 205 ~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~--------~~~p~~~l~~h~~~v~sv~~s~ 276 (524)
T 2j04_B 205 HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM--------CEKPSLTLSLADSLITTFDFLS 276 (524)
T ss_dssp ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC--------CCSCSEEECCTTTCEEEEEESS
T ss_pred ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee--------ecCceEEEEcCCCCEEEEEecC
Confidence 78899999999996 5799999999999999998653210 000 0012346788999999999998
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCe-EEEEEecCCCCeEEE--EEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGI-CTAVLRGHSSLVKGV--AWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~-~~~~l~~h~~~V~~l--~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
+ ..|++|+.||+|++||++++. ....+.+|...|.+| +|++++ .+|++++.|++|+|||+++++....+..+...
T Consensus 277 ~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~ 355 (524)
T 2j04_B 277 P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRG 355 (524)
T ss_dssp S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSC
T ss_pred C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccccccc
Confidence 6 489999999999999998764 456688999999999 578887 89999999999999999988776665544221
Q ss_pred cCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccc
Q 040062 212 SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGW 291 (689)
Q Consensus 212 ~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~ 291 (689)
..+.+++|+|+++.+++++.+ ..+++|+.........+.+|.+.|.+++|+|++
T Consensus 356 ----~~v~~v~fsp~~~~l~s~~~d----~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g------------------ 409 (524)
T 2j04_B 356 ----SNLVPVVYCPQIYSYIYSDGA----SSLRAVPSRAAFAVHPLVSRETTITAIGVSRLH------------------ 409 (524)
T ss_dssp ----CSCCCEEEETTTTEEEEECSS----SEEEEEETTCTTCCEEEEECSSCEEEEECCSSC------------------
T ss_pred ----CcccceEeCCCcCeEEEeCCC----CcEEEEECcccccceeeecCCCceEEEEeCCCC------------------
Confidence 126789999999998887653 357899988777767788999999999999987
Q ss_pred cCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc----cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 292 TNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH----FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 292 ~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.+|++|+.|++|++||+..+ .+..... .+...|.+++|+|++..+. ... .+.+|+.+
T Consensus 410 ---------------~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~ 470 (524)
T 2j04_B 410 ---------------PMVLAGSADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLT 470 (524)
T ss_dssp ---------------CBCEEEETTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC--
T ss_pred ---------------CeEEEEECCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--Cceecccc
Confidence 78999999999999998654 2221110 0112477999999998552 222 23333322
Q ss_pred -ccccccccChHHHHHHHHhccCCccCceeeeecCchhh---hhHhhccccceeeeeee
Q 040062 368 -VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL---LLEAASAKETTTKKVVS 422 (689)
Q Consensus 368 -~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~---~Las~s~DG~v~~~~~~ 422 (689)
++... ....+|...|.+++|||++. +||+|+.||+| +++.
T Consensus 471 ~~g~~~-------------~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~v--rlw~ 514 (524)
T 2j04_B 471 VNDVSK-------------AKIDAHGINITCTKWNETSAGGKCYAFSNSAGLL--TLEY 514 (524)
T ss_dssp ------------------------CCCSCCCEEECCSTTTTTEEEEECTTSEE--EEEE
T ss_pred cCCcce-------------eeecCCCceEEEEECCCCCCccHHHHhhccCceE--EEEE
Confidence 12211 23345778899999999964 99999999999 7665
No 65
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-34 Score=302.11 Aligned_cols=260 Identities=27% Similarity=0.380 Sum_probs=206.6
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIA 82 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~La 82 (689)
+....+|. ..|++++|+|+|++||+|+.|+.|+|||+... ....+..+.+|.+.|.+++|++ ++++|+
T Consensus 6 ~~~~~~H~-~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~---------~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~ 75 (316)
T 3bg1_A 6 NTVDTSHE-DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG---------GQILIADLRGHEGPVWQVAWAHPMYGNILA 75 (316)
T ss_dssp ---------CCEEEEEECGGGCEEEEEETTTEEEEEEEETT---------EEEEEEEEECCSSCEEEEEECCGGGSSCEE
T ss_pred eeeccccc-CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC---------CcEEEEEEcCCCccEEEEEeCCCCCCCEEE
Confidence 33445788 59999999999999999999999999999751 1245678999999999999986 489999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCeE-
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGIC- 159 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~~- 159 (689)
+|+.|++|++||+.++. +.....+.+|...|.+++|+|+ +.+|++++.|+.|++||+..+..
T Consensus 76 s~s~D~~v~iWd~~~~~---------------~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~ 140 (316)
T 3bg1_A 76 SCSYDRKVIIWREENGT---------------WEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQW 140 (316)
T ss_dssp EEETTSCEEEECCSSSC---------------CCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCE
T ss_pred EEECCCEEEEEECCCCc---------------ceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCc
Confidence 99999999999998652 2456678899999999999998 78999999999999999987632
Q ss_pred --EEEEecCCCCeEEEEEccC-----------------CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 160 --TAVLRGHSSLVKGVAWDPI-----------------GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 160 --~~~l~~h~~~V~~l~~spd-----------------g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
...+.+|...|.+++|+|+ +++|++++.|++|++||++....
T Consensus 141 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~------------------- 201 (316)
T 3bg1_A 141 EVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQ------------------- 201 (316)
T ss_dssp EECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSC-------------------
T ss_pred ceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCc-------------------
Confidence 3445679999999999997 46899999999999999853210
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
+.....+.+|...|.+++|+|++
T Consensus 202 ------------------------------~~~~~~l~~h~~~V~~v~~sp~~--------------------------- 224 (316)
T 3bg1_A 202 ------------------------------WKEEQKLEAHSDWVRDVAWAPSI--------------------------- 224 (316)
T ss_dssp ------------------------------EEEEECCBCCSSCEEEEECCCCS---------------------------
T ss_pred ------------------------------cceeeecccCCCceEEEEecCCC---------------------------
Confidence 01112356789999999999974
Q ss_pred ccCCCCcEEEEEeCCCcEEEEeCCCC---CceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 301 KESQPYNVIAIGSQDRTITVWTTASP---RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 301 ~~s~~~~~lasgs~Dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
..++.+|++++.|++|+|||+.+. .........|...|.+++|+|++++|++++.||.|++|+..
T Consensus 225 --~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 225 --GLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp --SCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred --CCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 112378999999999999998763 11111123468899999999999999999999999999975
No 66
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=1.4e-33 Score=327.47 Aligned_cols=309 Identities=20% Similarity=0.255 Sum_probs=247.2
Q ss_pred eeeeeecCCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 57 RLLATLRDHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
+....+.+|.+.|++|+|+++ +++|++|+.|++|++|++...... .......+.+|...|.+++|+|
T Consensus 373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------------~~~~~~~~~~h~~~v~~v~~s~ 440 (694)
T 3dm0_A 373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------------YGVAQRRLTGHSHFVEDVVLSS 440 (694)
T ss_dssp EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------------SCEEEEEEECCSSCEEEEEECT
T ss_pred chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------------cccccceecCCCCcEEEEEECC
Confidence 445578899999999999986 579999999999999999765211 1145678899999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCc
Q 040062 136 DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGS 215 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 215 (689)
++++|++|+.|+.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|++|++||+............ ....
T Consensus 441 ~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~---~~h~ 517 (694)
T 3dm0_A 441 DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGG---EGHR 517 (694)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSST---TSCS
T ss_pred CCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCC---CCCC
Confidence 9999999999999999999999999999999999999999999999999999999999998654332222111 1123
Q ss_pred ccEEEEEEcCCC--CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 216 TFFRRLGWSPCG--HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 216 ~~i~~l~~spdg--~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
..+.+++|+|++ ..+++++. ...+.+|+.........+.+|.+.|.+++|+|++
T Consensus 518 ~~v~~~~~~~~~~~~~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg-------------------- 573 (694)
T 3dm0_A 518 DWVSCVRFSPNTLQPTIVSASW----DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDG-------------------- 573 (694)
T ss_dssp SCEEEEEECSCSSSCEEEEEET----TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS--------------------
T ss_pred CcEEEEEEeCCCCcceEEEEeC----CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCC--------------------
Confidence 458999999987 46777765 4567899998888888899999999999999987
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
++|++|+.|+.|++||+.+++.+..+. +...|.+++|+|++.+|++++ |+.|++||++++++..
T Consensus 574 -------------~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~ 637 (694)
T 3dm0_A 574 -------------SLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVE 637 (694)
T ss_dssp -------------SEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred -------------CEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChh
Confidence 899999999999999999998877654 356799999999998888776 5669999999887665
Q ss_pred ccChHHHHHHH------HhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 374 RLSDAELDELK------RSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 374 ~l~~~~~~~~~------~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.+......... ......+...+++++|||||.+|++|+.||+| +++.
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i--~iW~ 690 (694)
T 3dm0_A 638 DLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVI--RVWG 690 (694)
T ss_dssp EECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEE--EEEE
T ss_pred hhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeE--EEEe
Confidence 44321000000 00001112247889999999999999999999 6664
No 67
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-34 Score=313.47 Aligned_cols=303 Identities=15% Similarity=0.224 Sum_probs=249.5
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEEEEEeCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYIASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~D 87 (689)
+.|. ..|++++|+|++++|++|+.||.|+|||+.... ...+.+..+.+|.+.|++++|+|+ +++|++++.|
T Consensus 64 ~~~~-~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-------~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d 135 (416)
T 2pm9_A 64 LQVD-SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-------NAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNN 135 (416)
T ss_dssp CCCS-SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-------SCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSS
T ss_pred EecC-CceEEEEECCCCCeEEEEccCCeEEEeeccccc-------ccccchhhccCCccceEEEEEcCCCCCEEEEEcCC
Confidence 3566 599999999999999999999999999997511 113477888999999999999998 8999999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEecC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
+.|++||+.++...... . .......+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+..+..|
T Consensus 136 g~v~iwd~~~~~~~~~~-------~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 136 GEIFIWDMNKCTESPSN-------Y-TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp SCEEBCBTTTTSSCTTT-------C-CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred CeEEEEECCCCcccccc-------c-cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence 99999999876411000 0 00111234578999999999999 789999999999999999999999999877
Q ss_pred ------CCCeEEEEEccCC-CEEEEEeCCC---eEEEEECCCC-cceeecc-CcccccCCcccEEEEEEcC-CCCeEEEe
Q 040062 167 ------SSLVKGVAWDPIG-SFIASQSDDK---TVIIWRTSDW-SLAHRTD-GHWAKSLGSTFFRRLGWSP-CGHFITTT 233 (689)
Q Consensus 167 ------~~~V~~l~~spdg-~~las~s~Dg---~I~iwd~~~~-~~~~~~~-~~~~~~~~~~~i~~l~~sp-dg~~l~~~ 233 (689)
...|.+++|+|++ .+|++++.|+ .|++||++++ .....+. .+. ..+.+++|+| ++.+|+++
T Consensus 208 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~------~~v~~~~~s~~~~~~l~s~ 281 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQ------KGILSLDWCHQDEHLLLSS 281 (416)
T ss_dssp CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCS------SCEEEEEECSSCSSCEEEE
T ss_pred ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCcc------CceeEEEeCCCCCCeEEEE
Confidence 7899999999997 6999999998 9999999986 4555554 443 3489999999 89999998
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
+. ...+.+|+.........+.+|...|.+++|+|++ ..+|++++
T Consensus 282 ~~----dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~--------------------------------~~~l~s~~ 325 (416)
T 2pm9_A 282 GR----DNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEA--------------------------------PDLFACAS 325 (416)
T ss_dssp ES----SSEEEEECSSSCCEEEEEECSSSCCCCEEECTTC--------------------------------TTEEEECC
T ss_pred eC----CCCEEEeeCCCCccceeecCCCCceEEEEECCCC--------------------------------CCEEEEEe
Confidence 76 3567899988888888899999999999999974 26899999
Q ss_pred CCCcEEEEeCCCCCceEEec----------------------------------ccCCCCeEEEEEccCCCeEEEEeCCC
Q 040062 314 QDRTITVWTTASPRPLFVAK----------------------------------HFFTQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~----------------------------------~~h~~~V~~l~~spdg~~L~sgs~DG 359 (689)
.|+.|++||+.+........ ..|...+.+++|+|||++|++++.||
T Consensus 326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~ 405 (416)
T 2pm9_A 326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK 405 (416)
T ss_dssp SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence 99999999998765432110 11566788999999999999999999
Q ss_pred cEEEEEeecc
Q 040062 360 TVANFHFEVK 369 (689)
Q Consensus 360 ~I~vwd~~~~ 369 (689)
.|+||++.+.
T Consensus 406 ~v~~w~~~~~ 415 (416)
T 2pm9_A 406 GVSITNPKIS 415 (416)
T ss_dssp CBCCBCCCCC
T ss_pred eEEEEEeccC
Confidence 9999998764
No 68
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.5e-33 Score=305.21 Aligned_cols=316 Identities=14% Similarity=0.187 Sum_probs=232.0
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC------------CcEEEEEEcCC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF------------GSVNCVRWAKH 77 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~v~fspd 77 (689)
.|. ..|++++|+|+|++||+|+.||.|+|||+..............+....+.+|. +.|++++|+|+
T Consensus 26 ~~~-~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEA-DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGG-GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccc-CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 345 59999999999999999999999999999863211111112234678889998 88999999999
Q ss_pred C--CEEEEEeCCCeEEEEEcCCCCCccc-cCCC------------CCCCccc-----c----eEEEE-EecCCCCEEEEE
Q 040062 78 G--RYIASGSDDQVILIHEKKPGSGTTE-FGSG------------EPPDIEN-----W----KVAMT-LRGHTADVVDLN 132 (689)
Q Consensus 78 g--~~Lasgs~Dg~I~iwdl~~~~~~~~-~~~~------------~~~~~~~-----~----~~~~~-l~~h~~~V~~l~ 132 (689)
+ .+|++++.|+.|++||+..+..... +... ....... + ..... +.+|...|.+++
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 8 8999999999999999976421100 0000 0000000 0 11122 368999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCC-CeEEEE-------EecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcc--
Q 040062 133 WSPDDSILASGSLDNTIHIWNMST-GICTAV-------LRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSL-- 201 (689)
Q Consensus 133 ~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~-------l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~-- 201 (689)
|+|++++|+++ .|+.|++||+.+ ++.+.. +.+|...|.+++|+|++ ++|++++.|+.|++||+++++.
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~ 263 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD 263 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence 99999999998 799999999984 444442 45799999999999998 9999999999999999998876
Q ss_pred --eeeccCcccccC------CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC-ceeeeeecCCCCC---------
Q 040062 202 --AHRTDGHWAKSL------GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE-WAATFDFLGHNAP--------- 263 (689)
Q Consensus 202 --~~~~~~~~~~~~------~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~h~~~--------- 263 (689)
...+..+..... ....+.+++|+|+|++|++++. ..+.+|+... ......+.+|...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecccccccccccccc
Confidence 555555432100 0014899999999999998754 5677888765 5555566666432
Q ss_pred ------EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc---
Q 040062 264 ------IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH--- 334 (689)
Q Consensus 264 ------v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~--- 334 (689)
+..++|+|++ .+|++|+.||.|++||+.+++.+.....
T Consensus 339 ~~~i~~~~~~~~s~~~---------------------------------~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~ 385 (447)
T 3dw8_B 339 NDCIFDKFECCWNGSD---------------------------------SVVMTGSYNNFFRMFDRNTKRDITLEASREN 385 (447)
T ss_dssp TSGGGCCCCEEECTTS---------------------------------SEEEEECSTTEEEEEETTTCCEEEEECCSTT
T ss_pred ccccccceEEEECCCC---------------------------------CEEEEeccCCEEEEEEcCCCcceeeeecccc
Confidence 2236777665 8999999999999999998876542211
Q ss_pred ----------------------------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 335 ----------------------------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 335 ----------------------------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.+...|.+++|+|++.+|++++.++ +++|.-
T Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 386 NKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred cccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 2345789999999999999998775 888863
No 69
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.6e-33 Score=301.04 Aligned_cols=285 Identities=21% Similarity=0.307 Sum_probs=236.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
+.+++|++ ..+++++.|+.|+|||+.+ ++....+.. |.+.|.+++|+|++++|++|+.||.|++||
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~-----------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 162 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADS-----------GSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD 162 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTT-----------CCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCC-----------CcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence 44577765 4578888999999999986 555555554 889999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCeEEEEEecCCCCeEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS-TGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~-~~~~~~~l~~h~~~V~~l 173 (689)
+.++ +....+.+|...|.+++| ++.+|++++.|+.|++||++ ....+..+.+|...|.++
T Consensus 163 ~~~~-----------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~ 223 (401)
T 4aez_A 163 VESQ-----------------TKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGL 223 (401)
T ss_dssp TTTC-----------------CEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEE
T ss_pred CcCC-----------------eEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEE
Confidence 9887 677888899999999999 46799999999999999998 567788899999999999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
+|+|++++|++++.|+.|++||+++++....+..+.. .+.+++|+|++..++++++ +.....+.+|+......
T Consensus 224 ~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~------~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~ 296 (401)
T 4aez_A 224 AWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA------AVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR 296 (401)
T ss_dssp EECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS------CCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred EEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc------eEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence 9999999999999999999999999888877765543 3889999998866665432 11245688898877766
Q ss_pred eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE--EeCCCcEEEEeCCCCCceEE
Q 040062 254 TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI--GSQDRTITVWTTASPRPLFV 331 (689)
Q Consensus 254 ~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las--gs~Dg~I~iwd~~~~~~~~~ 331 (689)
...+. +...+.+++|+|++ .++++ |+.||.|++||+.+++....
T Consensus 297 ~~~~~-~~~~v~~~~~s~~~---------------------------------~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 297 VNTVD-AGSQVTSLIWSPHS---------------------------------KEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp EEEEE-CSSCEEEEEECSSS---------------------------------SEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred EEEEe-CCCcEEEEEECCCC---------------------------------CeEEEEeecCCCcEEEEecCCccceeE
Confidence 65554 67889999999987 67777 44899999999998765544
Q ss_pred e-cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 332 A-KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 332 ~-~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
. ...|...|.+++|+|+|++|++++.||.|++|++.+++...
T Consensus 343 ~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~~ 385 (401)
T 4aez_A 343 VDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHVK 385 (401)
T ss_dssp EEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-----
T ss_pred EEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcccc
Confidence 3 24578899999999999999999999999999999877654
No 70
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9.4e-33 Score=294.07 Aligned_cols=261 Identities=23% Similarity=0.345 Sum_probs=219.8
Q ss_pred CceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC--CCEEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH--GRYIAS 83 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd--g~~Las 83 (689)
..+.+|. ..|++++|+|++++||+|+.||.|+|||+.. ...+.+..+.+|.+.|++++|+++ +++|++
T Consensus 5 ~~~~~h~-~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s 74 (379)
T 3jrp_A 5 VIANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILAS 74 (379)
T ss_dssp CCEEECC-CCEEEEEECSSSSEEEEEETTSCEEEEEEET---------TEEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred EEecCCc-ccEEEEEEcCCCCEEEEEECCCcEEEEecCC---------CcceeeeEecCCCCcEEEEEeCCCCCCCEEEE
Confidence 3456788 5999999999999999999999999999973 126778889999999999999987 999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCC--eE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTG--IC 159 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~--~~ 159 (689)
++.||.|++||+.++. +.....+..|...|.+++|+|+ +.+|++++.|+.|++||+.+. ..
T Consensus 75 ~~~dg~v~iwd~~~~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~ 139 (379)
T 3jrp_A 75 CSYDGKVLIWKEENGR---------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTS 139 (379)
T ss_dssp EETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCC
T ss_pred eccCCEEEEEEcCCCc---------------eeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCcee
Confidence 9999999999998761 2377788889999999999999 899999999999999999887 34
Q ss_pred EEEEecCCCCeEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 160 TAVLRGHSSLVKGVAWDP-------------IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~sp-------------dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
...+..|...|.+++|+| ++.+|++++.|+.|++||+++......
T Consensus 140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~---------------------- 197 (379)
T 3jrp_A 140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV---------------------- 197 (379)
T ss_dssp EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEE----------------------
T ss_pred eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCccee----------------------
Confidence 556778999999999999 699999999999999999865432211
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
....+.+|...|.+++|+|++. .+
T Consensus 198 --------------------------~~~~~~~h~~~v~~~~~sp~~~------------------------------~~ 221 (379)
T 3jrp_A 198 --------------------------LESTLEGHSDWVRDVAWSPTVL------------------------------LR 221 (379)
T ss_dssp --------------------------EEEEECCCSSCEEEEEECCCCS------------------------------SS
T ss_pred --------------------------eEEEEecccCcEeEEEECCCCC------------------------------CC
Confidence 1123557899999999999820 02
Q ss_pred cEEEEEeCCCcEEEEeCCCCCce--EEec--ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 307 NVIAIGSQDRTITVWTTASPRPL--FVAK--HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~--~~~~--~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
.+|++++.||.|++||+.++... .... ..|...|.+++|+|++++|++++.||.|++|++...
T Consensus 222 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 222 SYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp EEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 89999999999999999987422 1222 236788999999999999999999999999999854
No 71
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-32 Score=293.15 Aligned_cols=309 Identities=17% Similarity=0.205 Sum_probs=232.0
Q ss_pred eeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcc--cceeeeeecCCCCcEEEEEEcC-CCCEEEEE
Q 040062 9 VRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDES--TQRLLATLRDHFGSVNCVRWAK-HGRYIASG 84 (689)
Q Consensus 9 ~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~--~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasg 84 (689)
..|. ..|++++|+| ++++|++|+.||.|+|||+............ .........+|.+.|.+++|+| ++.+|+++
T Consensus 40 ~~h~-~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 40 RIHG-GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSS 118 (408)
T ss_dssp CCCS-SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEE
T ss_pred eccC-CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEE
Confidence 3577 6999999999 9999999999999999999862211100000 0000001135999999999999 78899999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC---CEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD---SILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg---~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
+.|+.|++||+.++ +....+. +...+.++.|++.+ .+|++++.|+.|++||+.+++.+.
T Consensus 119 ~~d~~i~iwd~~~~-----------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~ 180 (408)
T 4a11_B 119 SFDKTLKVWDTNTL-----------------QTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSH 180 (408)
T ss_dssp ETTSEEEEEETTTT-----------------EEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCE
T ss_pred eCCCeEEEeeCCCC-----------------ccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceee
Confidence 99999999999886 4555554 77889999999854 499999999999999999999999
Q ss_pred EEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCc-ceeeccCccc---------ccCCcccEEEEEEcCCCCeE
Q 040062 162 VLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWS-LAHRTDGHWA---------KSLGSTFFRRLGWSPCGHFI 230 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~-~~~~~~~~~~---------~~~~~~~i~~l~~spdg~~l 230 (689)
.+..|...|.+++|+|+++ +|++++.||.|++||+++.. ....+..+.. .......+.+++|+|++++|
T Consensus 181 ~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 260 (408)
T 4a11_B 181 ILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHL 260 (408)
T ss_dssp EECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEE
T ss_pred eecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEE
Confidence 9999999999999999998 58999999999999998765 2222211100 01234458999999999999
Q ss_pred EEecCCCCCccccceeecCCceeeeeecCCCCCE----EEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 231 TTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPI----IVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 231 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v----~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
++++.+ ..+.+|+.........+..+.... ..+.+. ....
T Consensus 261 ~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~~~~ 304 (408)
T 4a11_B 261 LTVGTD----NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVS--------------------------------CGCS 304 (408)
T ss_dssp EEEETT----SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEEC--------------------------------CSSS
T ss_pred EEecCC----CeEEEEECCCCccceeccccccccccccceeEEe--------------------------------cCCC
Confidence 998763 456788876655433332221100 000000 1123
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccc
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
..+++++.|+.|++||+.+++++..+. .|...|++++|+|++++|++++.||.|++|++++++...
T Consensus 305 ~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~ 370 (408)
T 4a11_B 305 SEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP 370 (408)
T ss_dssp SCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred ceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence 567777889999999999999988876 578999999999999999999999999999999877654
No 72
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=1.2e-33 Score=297.20 Aligned_cols=276 Identities=13% Similarity=0.107 Sum_probs=232.2
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCC
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQ 88 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg 88 (689)
.|. ..|++++|+|++++|++++.||.|+||++.... .......+..|...|++++|+|+++ +|++++.||
T Consensus 9 ~h~-~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 9 APK-DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQA--------KNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CCS-SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTT--------TEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCC--------ccccceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 677 599999999999999999999999999998611 0123455568999999999999999 999999999
Q ss_pred eEEEEEc-CCCCCccccCCCCCCCcccceEEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------
Q 040062 89 VILIHEK-KPGSGTTEFGSGEPPDIENWKVAMTLRG--HTADVVDLNWSPDDSILASGSLDNTIHIWNMST--------- 156 (689)
Q Consensus 89 ~I~iwdl-~~~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~--------- 156 (689)
.|++||+ ..+ ....+.+ |...|.+++|+| +.+|++++.|+.|++||+++
T Consensus 80 ~i~~wd~~~~~------------------~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 140 (342)
T 1yfq_A 80 EILKVDLIGSP------------------SFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVK 140 (342)
T ss_dssp CEEEECSSSSS------------------SEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred eEEEEEeccCC------------------ceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEccccccccccccc
Confidence 9999999 765 2366777 999999999999 99999999999999999987
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
++.+..+. |...|.+++|+|++ |++++.|+.|++||+++ +.....
T Consensus 141 ~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~------------------------------- 186 (342)
T 1yfq_A 141 NLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT------------------------------- 186 (342)
T ss_dssp ESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE-------------------------------
T ss_pred CCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce-------------------------------
Confidence 66666666 88999999999887 99999999999999976 332110
Q ss_pred CCCCccccceeecCCceeeeeecCCCCCEEEEEEcC-CccccccccccccccccccccCCcccccCccCCCCcEEEEEeC
Q 040062 236 FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNH-SMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ 314 (689)
Q Consensus 236 ~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~ 314 (689)
.....|...+.+++|+| ++ +++++++.
T Consensus 187 -------------------~~~~~~~~~i~~i~~~~~~~---------------------------------~~l~~~~~ 214 (342)
T 1yfq_A 187 -------------------IEESGLKYQIRDVALLPKEQ---------------------------------EGYACSSI 214 (342)
T ss_dssp -------------------EEECSCSSCEEEEEECSGGG---------------------------------CEEEEEET
T ss_pred -------------------eeecCCCCceeEEEECCCCC---------------------------------CEEEEEec
Confidence 01224667889999998 76 79999999
Q ss_pred CCcEEEEeCCCC------CceEEecccCC---------CCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHH
Q 040062 315 DRTITVWTTASP------RPLFVAKHFFT---------QSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAE 379 (689)
Q Consensus 315 Dg~I~iwd~~~~------~~~~~~~~~h~---------~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~ 379 (689)
||.|++|+++.. +....+.. |. ..|.+++|+|++++|++++.||.|++||+.+++....+
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~---- 289 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAFRC-HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNF---- 289 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEEEC-CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEEC----
T ss_pred CCcEEEEEEcCCCcccccccceeeec-ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhh----
Confidence 999999999887 66666553 43 38999999999999999999999999999988765433
Q ss_pred HHHHHHhccCCc-cCceeeeecCchhhhhHhhccccc
Q 040062 380 LDELKRSRYGDV-RGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 380 ~~~~~~~~~g~~-~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
..| .+.|.+++ |++.+|++++.||+
T Consensus 290 ---------~~~h~~~v~~~~--~~~~~l~s~s~Dg~ 315 (342)
T 1yfq_A 290 ---------AKFNEDSVVKIA--CSDNILCLATSDDT 315 (342)
T ss_dssp ---------CCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred ---------hcccCCCceEec--CCCCeEEEEecCCc
Confidence 344 77899999 99999999999999
No 73
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-32 Score=298.60 Aligned_cols=283 Identities=15% Similarity=0.171 Sum_probs=234.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.+....|++++++|++|+.||.|+|||+.. .+....+.+|.+.|++++|+|++++|++++.|+.|++||
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd 167 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNF-----------NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWS 167 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTS-----------CEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCC-----------cceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 566668899999999999999999999986 677778889999999999999999999999999999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec---CCCCeE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG---HSSLVK 171 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~---h~~~V~ 171 (689)
+.++ +....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+.. |...|.
T Consensus 168 ~~~~-----------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~ 230 (420)
T 3vl1_A 168 VKDG-----------------SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVN 230 (420)
T ss_dssp TTTC-----------------CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEE
T ss_pred CCCC-----------------cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCcc
Confidence 9877 45567789999999999999999999999999999999999999998875 334454
Q ss_pred EE---------------------EEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC-e
Q 040062 172 GV---------------------AWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH-F 229 (689)
Q Consensus 172 ~l---------------------~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~-~ 229 (689)
++ +|+|++++|++++.||.|++||+++++....+.... ...+.+++|+|++. +
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~ 305 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKF-----TCSCNSLTVDGNNANY 305 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTT-----SSCEEEEEECSSCTTE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEccccc-----CCCceeEEEeCCCCCE
Confidence 44 457889999999999999999999988776664321 23489999999999 8
Q ss_pred EEEecCCCCCccccceeecCCcee-eeeecC-CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 230 ITTTHGFQKPRHSAPVLERGEWAA-TFDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
|++++. ...+.+|+...... ...+.. |...+.++.|. ++ .
T Consensus 306 l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~-~~---------------------------------~ 347 (420)
T 3vl1_A 306 IYAGYE----NGMLAQWDLRSPECPVGEFLINEGTPINNVYFA-AG---------------------------------A 347 (420)
T ss_dssp EEEEET----TSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE-TT---------------------------------E
T ss_pred EEEEeC----CCeEEEEEcCCCcCchhhhhccCCCCceEEEeC-CC---------------------------------C
Confidence 888765 35678898876543 444554 67788888665 33 6
Q ss_pred EEEEEeCCCcEEEEeCCCCCce--------EEecccCCCCeEEEEEccCCC---eEEEEeCCCcEEEEEeec
Q 040062 308 VIAIGSQDRTITVWTTASPRPL--------FVAKHFFTQSVVDLSWSPDGY---SLFACSLDGTVANFHFEV 368 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~--------~~~~~~h~~~V~~l~~spdg~---~L~sgs~DG~I~vwd~~~ 368 (689)
+|++++.|+.|++||+...... ......|...|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 348 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 348 LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 9999999999999998873211 112234678899999999999 788888899999999864
No 74
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=8.7e-33 Score=286.30 Aligned_cols=269 Identities=19% Similarity=0.240 Sum_probs=206.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-- 136 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-- 136 (689)
+..+.+|.+.|++++|+|+|++||+|+.|++|+|||+..... +....+.+|...|.+++|+++
T Consensus 2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------~~~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------KLIDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB---------------CCCEEECCCSSCEEEEEECCGGG
T ss_pred ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc---------------EEEEEEccccCCeEEEEecCCCc
Confidence 345778999999999999999999999999999999975311 356778899999999999874
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe--EEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 137 DSILASGSLDNTIHIWNMSTGI--CTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
+++|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+ +.+|++++.|++|++||+++......
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~-------- 138 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP-------- 138 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC--------
T ss_pred CCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee--------
Confidence 8899999999999999998874 56678889999999999997 89999999999999999975421100
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
..+.+|...|.+++|+|+......
T Consensus 139 ------------------------------------------~~~~~h~~~v~~~~~~p~~~~~~~-------------- 162 (297)
T 2pm7_B 139 ------------------------------------------IIIDAHAIGVNSASWAPATIEEDG-------------- 162 (297)
T ss_dssp ------------------------------------------EEEECCSSCEEEEEECCCC-------------------
T ss_pred ------------------------------------------eeeecccCccceEeecCCcccccc--------------
Confidence 012346666777777765311000
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc----eEEecccCCCCeEEEEEccCC---CeEEEEeCCCcEEEEE
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP----LFVAKHFFTQSVVDLSWSPDG---YSLFACSLDGTVANFH 365 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spdg---~~L~sgs~DG~I~vwd 365 (689)
......++++|++|+.|+.|++||+++++. ...+ ..|...|.+++|+|++ ++|++++.|++|++||
T Consensus 163 ------~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l-~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 163 ------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL-EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp -------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE-CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred ------cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe-cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 000011347999999999999999988763 3333 4689999999999995 8999999999999999
Q ss_pred eeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 366 FEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 366 ~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
++......... ......|...|.+++|+|+|.+|++++.||+| +++..
T Consensus 236 ~~~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v--~lw~~ 283 (297)
T 2pm7_B 236 QDNEQGPWKKT--------LLKEEKFPDVLWRASWSLSGNVLALSGGDNKV--TLWKE 283 (297)
T ss_dssp ESSTTSCCEEE--------ESSSSCCSSCEEEEEECSSSCCEEEEETTSCE--EEEEE
T ss_pred eCCCCCcccee--------eeecccCCCcEEEEEECCCCCEEEEEcCCCcE--EEEEE
Confidence 97643110000 01113456689999999999999999999999 66653
No 75
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=3.2e-33 Score=300.55 Aligned_cols=314 Identities=15% Similarity=0.132 Sum_probs=250.3
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
......+.+|.+.|++++|+| ++|++|+.||.|++|++.++... ..+.....+.+|...|.+++|++
T Consensus 6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----------~~~~~~~~~~~h~~~v~~~~~~~ 72 (397)
T 1sq9_A 6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----------NPKDKSYSHFVHKSGLHHVDVLQ 72 (397)
T ss_dssp EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----------CGGGGEEEEECCTTCEEEEEEEE
T ss_pred hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----------cCCCcceEEecCCCcEEEEEEec
Confidence 355677889999999999998 79999999999999999886311 11235677789999999999999
Q ss_pred C----C---CEEEEEeCCCeEEEEEcCCCeE-----EEEEecC-----CCCeEEEEEc----cCCCE-EEEEeCCCeEEE
Q 040062 136 D----D---SILASGSLDNTIHIWNMSTGIC-----TAVLRGH-----SSLVKGVAWD----PIGSF-IASQSDDKTVII 193 (689)
Q Consensus 136 d----g---~~Lasgs~Dg~I~vwd~~~~~~-----~~~l~~h-----~~~V~~l~~s----pdg~~-las~s~Dg~I~i 193 (689)
+ + .+|++++.|+.|++||+.+++. +..+..| ...|.+++|+ |++++ |++++.|+.|++
T Consensus 73 ~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 73 AIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 152 (397)
T ss_dssp EEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEE
T ss_pred ccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEE
Confidence 9 9 9999999999999999998887 8888888 5999999999 99999 999999999999
Q ss_pred EECCC------Cccee-----eccCcc-cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC--
Q 040062 194 WRTSD------WSLAH-----RTDGHW-AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG-- 259 (689)
Q Consensus 194 wd~~~------~~~~~-----~~~~~~-~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-- 259 (689)
||+++ .+.+. .+.... ........+.+++|+|++ +++++.. ...+.+|+.........+..
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~ 227 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQH 227 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccc
Confidence 99988 55554 332100 001123448899999999 8887765 45678999888888888888
Q ss_pred -C---CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC---CcEEEEeCCCCCceEEe
Q 040062 260 -H---NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD---RTITVWTTASPRPLFVA 332 (689)
Q Consensus 260 -h---~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~~~~~~~ 332 (689)
| ...+.+++|+|++ .+|++++.| +.|++||+.+++.+..+
T Consensus 228 ~h~~~~~~i~~i~~~~~~---------------------------------~~l~~~~~d~~~g~i~i~d~~~~~~~~~~ 274 (397)
T 1sq9_A 228 SMINNSNSIRSVKFSPQG---------------------------------SLLAIAHDSNSFGCITLYETEFGERIGSL 274 (397)
T ss_dssp ---CCCCCEEEEEECSST---------------------------------TEEEEEEEETTEEEEEEEETTTCCEEEEE
T ss_pred cccccCCccceEEECCCC---------------------------------CEEEEEecCCCCceEEEEECCCCccccee
Confidence 9 9999999999986 799999999 99999999999888877
Q ss_pred ccc------------CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChH------HHHH--HHHhccCCcc
Q 040062 333 KHF------------FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDA------ELDE--LKRSRYGDVR 392 (689)
Q Consensus 333 ~~~------------h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~------~~~~--~~~~~~g~~~ 392 (689)
... |...|.+++|+|++++|++++.||.|++||+.+++....+... +.+. -.......|.
T Consensus 275 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 354 (397)
T 1sq9_A 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAE 354 (397)
T ss_dssp CBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSS
T ss_pred ccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccC
Confidence 642 7889999999999999999999999999999988776544310 0000 0000001127
Q ss_pred CceeeeecCchh----------hhhHhhccccceeeeeee
Q 040062 393 GRLANLAETPAQ----------LLLEAASAKETTTKKVVS 422 (689)
Q Consensus 393 ~~I~~l~~Spdg----------~~Las~s~DG~v~~~~~~ 422 (689)
..|.+++|+|++ .+|++++.||.| +++.
T Consensus 355 ~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i--~iw~ 392 (397)
T 1sq9_A 355 PGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSI--RWFR 392 (397)
T ss_dssp CCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEE--EEEE
T ss_pred CceeEEEeccccccccccccccceEEEecCCCcE--EEEE
Confidence 789999999999 799999999999 5654
No 76
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=2.2e-32 Score=290.96 Aligned_cols=300 Identities=14% Similarity=0.185 Sum_probs=243.7
Q ss_pred ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE
Q 040062 62 LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA 141 (689)
Q Consensus 62 l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La 141 (689)
+..|.+.|++++|+|++++|++++.|+.|++||+.++. ++....+.+|...|.+++|+|++++|+
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~~~~l~ 68 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK---------------WVQVHELKEHNGQVTGVDWAPDSNRIV 68 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE---------------EEEEEEEECCSSCEEEEEEETTTTEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc---------------EEeeeeecCCCCcccEEEEeCCCCEEE
Confidence 34589999999999999999999999999999998761 137888899999999999999999999
Q ss_pred EEeCCCeEEEEEcCCCeEEEEE--ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc---eeec-cCcccccCCc
Q 040062 142 SGSLDNTIHIWNMSTGICTAVL--RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL---AHRT-DGHWAKSLGS 215 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~---~~~~-~~~~~~~~~~ 215 (689)
+++.|+.|++||+.+++....+ ..|...|.+++|+|++++|++++.|+.|++||++.... ...+ ..+ .
T Consensus 69 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~------~ 142 (372)
T 1k8k_C 69 TCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPI------R 142 (372)
T ss_dssp EEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTC------C
T ss_pred EEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeeccc------C
Confidence 9999999999999988765544 56899999999999999999999999999999987763 2222 222 3
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeec------------------CCceeeeeecCCCCCEEEEEEcCCccccc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER------------------GEWAATFDFLGHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~------------------~~~~~~~~l~~h~~~v~~v~fsp~~~~~~ 277 (689)
..+.++.|+|+++++++++.+ ..+.+|+. ........+.+|...+.+++|+|++
T Consensus 143 ~~i~~~~~~~~~~~l~~~~~d----g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---- 214 (372)
T 1k8k_C 143 STVLSLDWHPNSVLLAAGSCD----FKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANG---- 214 (372)
T ss_dssp SCEEEEEECTTSSEEEEEETT----SCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSS----
T ss_pred CCeeEEEEcCCCCEEEEEcCC----CCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCC----
Confidence 348999999999999998763 45667773 3455666777999999999999986
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~ 357 (689)
++|++++.|+.|++||+++++.+..+. .|...|.+++|+|++++|+++ .
T Consensus 215 -----------------------------~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~-~ 263 (372)
T 1k8k_C 215 -----------------------------SRVAWVSHDSTVCLADADKKMAVATLA-SETLPLLAVTFITESSLVAAG-H 263 (372)
T ss_dssp -----------------------------SEEEEEETTTEEEEEEGGGTTEEEEEE-CSSCCEEEEEEEETTEEEEEE-T
T ss_pred -----------------------------CEEEEEeCCCEEEEEECCCCceeEEEc-cCCCCeEEEEEecCCCEEEEE-e
Confidence 799999999999999999999888776 468899999999999988888 8
Q ss_pred CCcEEEEEeec--cc--cccccChHH---------HHHH---------H------HhccCCccCceeeeecC-chh---h
Q 040062 358 DGTVANFHFEV--KE--LGHRLSDAE---------LDEL---------K------RSRYGDVRGRLANLAET-PAQ---L 405 (689)
Q Consensus 358 DG~I~vwd~~~--~~--l~~~l~~~~---------~~~~---------~------~~~~g~~~~~I~~l~~S-pdg---~ 405 (689)
|+.|++|++.. ++ +...+.... ...+ . ......|.+.|++++|+ ++| .
T Consensus 264 d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~ 343 (372)
T 1k8k_C 264 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCS 343 (372)
T ss_dssp TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCS
T ss_pred CCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCccee
Confidence 99999999988 53 111111100 0000 0 12334688899999966 677 9
Q ss_pred hhHhhccccceeeeeeec
Q 040062 406 LLEAASAKETTTKKVVSD 423 (689)
Q Consensus 406 ~Las~s~DG~v~~~~~~~ 423 (689)
+|++++.||.| +++..
T Consensus 344 ~l~s~~~Dg~i--~~W~~ 359 (372)
T 1k8k_C 344 QFCTTGMDGGM--SIWDV 359 (372)
T ss_dssp EEEEEETTSEE--EEEEH
T ss_pred eEEEecCCCce--EEEEe
Confidence 99999999999 77653
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.2e-32 Score=324.68 Aligned_cols=354 Identities=16% Similarity=0.170 Sum_probs=273.9
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.+..|. .+|.+++|+|++++|++|+.||.|+|||+.+ ++.+..+.+|.+.|.+++|+|++++|++++.
T Consensus 50 ~~~~~~-~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~-----------~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 117 (814)
T 3mkq_A 50 SIQVTE-TPVRAGKFIARKNWIIVGSDDFRIRVFNYNT-----------GEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD 117 (814)
T ss_dssp EEECCS-SCEEEEEEEGGGTEEEEEETTSEEEEEETTT-----------CCEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred EEecCC-CcEEEEEEeCCCCEEEEEeCCCeEEEEECCC-----------CcEEEEEecCCCCEEEEEEeCCCCEEEEEcC
Confidence 344677 5999999999999999999999999999987 7888899999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
||.|++||+.++. .....+.+|...|.+++|+| ++.+|++++.|+.|++||+.++.....+..
T Consensus 118 dg~i~vw~~~~~~----------------~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~ 181 (814)
T 3mkq_A 118 DLTVKLWNWENNW----------------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT 181 (814)
T ss_dssp TSEEEEEEGGGTS----------------EEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC
T ss_pred CCEEEEEECCCCc----------------eEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec
Confidence 9999999998652 56778889999999999999 888999999999999999998887777766
Q ss_pred CC-CCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 166 HS-SLVKGVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 166 h~-~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+. ..+.+++|+| ++.+|++++.||.|++||+++++....+..+... +.+++|+|++.++++++. ...
T Consensus 182 ~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~l~~~~~----dg~ 251 (814)
T 3mkq_A 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSN------VSFAVFHPTLPIIISGSE----DGT 251 (814)
T ss_dssp CCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSC------EEEEEECSSSSEEEEEET----TSC
T ss_pred CCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCC------EEEEEEcCCCCEEEEEeC----CCe
Confidence 55 8899999999 9999999999999999999999888887765443 899999999999999876 356
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc---EE
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT---IT 319 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~---I~ 319 (689)
+.+|+.........+..|...+.+++|+|++...+......... ..|...........++++..+++++.+.. +.
T Consensus 252 v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 329 (814)
T 3mkq_A 252 LKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGF--TVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIF 329 (814)
T ss_dssp EEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEE--EEEECSCCSCCEEECSSSEEEEECCTTSCTTCEE
T ss_pred EEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCE--EEEEcCCCCceeEECCCCCEEEECcccccceeee
Confidence 78999988888888899999999999999974321111111110 01111111111222344555555444331 11
Q ss_pred ------EEeCCCCCceE---EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCC
Q 040062 320 ------VWTTASPRPLF---VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGD 390 (689)
Q Consensus 320 ------iwd~~~~~~~~---~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~ 390 (689)
.|++..+.... .....+...+.+++|+|+|++|++++ ||.+.+|++..... .
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------------------~ 390 (814)
T 3mkq_A 330 TAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------------------K 390 (814)
T ss_dssp EEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE------------------E
T ss_pred eeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc------------------c
Confidence 12222222211 11123455689999999999999998 99999999643211 1
Q ss_pred ccCceeeeecCchhhhhHhhccccceeeeee
Q 040062 391 VRGRLANLAETPAQLLLEAASAKETTTKKVV 421 (689)
Q Consensus 391 ~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~ 421 (689)
+.+.+.+++|+||+.+|++++.||++ +++
T Consensus 391 ~~~~i~~~~~spdg~~la~~~~~g~v--~l~ 419 (814)
T 3mkq_A 391 AFGKCQDFVWGPDSNSYALIDETGQI--KYY 419 (814)
T ss_dssp EEEECSEEEECTTSSCEEEECTTCCE--EEE
T ss_pred CCCceEEEEEeCCCCeEEEEeCCCcE--EEE
Confidence 33478999999999999999999998 555
No 78
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.2e-31 Score=291.77 Aligned_cols=286 Identities=21% Similarity=0.336 Sum_probs=234.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee--ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT--LRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.++.|+||++ ++||+|. |++|+|||..+ ++.... +.+|...|++|+|+|+|++||+|+.||.|+|
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~t-----------g~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~i 173 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASS-----------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQL 173 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTT-----------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCC-----------CCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEE
Confidence 4677999976 5788776 89999999987 555444 4578889999999999999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEEecCCCCeE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAVLRGHSSLVK 171 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~l~~h~~~V~ 171 (689)
||+.++ +.+..+.+|...+.+++|+ +.+|++++.|+.+++||... ...+..+.+|...+.
T Consensus 174 Wd~~~~-----------------~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~ 234 (420)
T 4gga_A 174 WDVQQQ-----------------KRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVC 234 (420)
T ss_dssp EETTTT-----------------EEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE
T ss_pred EEcCCC-----------------cEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccccccee
Confidence 999987 7888999999999999885 67999999999999999886 456778899999999
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEE-ecCCCCCccccceeecCC
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT-THGFQKPRHSAPVLERGE 250 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~-~~~~~~~~~~~~i~~~~~ 250 (689)
++.|+|++++|++++.|+.+++|+..+++......... ......+..++|+|++..+++ +.+ .....+.+|+..+
T Consensus 235 ~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~--~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t 310 (420)
T 4gga_A 235 GLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTF--TQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCS 310 (420)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEE--CCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTT
T ss_pred eeeecCCCCeeeeeeccccceEEeeccccccceeeeee--cccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCc
Confidence 99999999999999999999999998765432211110 112334899999998765544 332 2245688999888
Q ss_pred ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe--CCCcEEEEeCCCCCc
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS--QDRTITVWTTASPRP 328 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs--~Dg~I~iwd~~~~~~ 328 (689)
......+..| ..+..+.|++++ +.+++++ .|+.|+|||+.++++
T Consensus 311 ~~~~~~~~~~-~~v~~~~~~~~~---------------------------------~~lv~~sg~~d~~I~iwd~~~~~~ 356 (420)
T 4gga_A 311 GACLSAVDAH-SQVCSILWSPHY---------------------------------KELISGHGFAQNQLVIWKYPTMAK 356 (420)
T ss_dssp TEEEEEEECS-SCEEEEEEETTT---------------------------------TEEEEEECTTTCCEEEEETTTCCE
T ss_pred cccceeeccc-cceeeeeecCCC---------------------------------CeEEEEEecCCCEEEEEECCCCcE
Confidence 8777666544 578888898876 4555543 799999999999999
Q ss_pred eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 329 LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
+..+. +|...|++++|+|||++|++|+.||+|+|||+.....
T Consensus 357 v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~ 398 (420)
T 4gga_A 357 VAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDP 398 (420)
T ss_dssp EEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSC
T ss_pred EEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCc
Confidence 98876 5899999999999999999999999999999876543
No 79
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=276.44 Aligned_cols=283 Identities=22% Similarity=0.347 Sum_probs=229.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeee--cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATL--RDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+.+|+||+++ +||+|. |++|+|||+.+ ++.+..+ .+|...|++++|+|++++|++|+.||.|++|
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~t-----------g~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw 94 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASS-----------GDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTT-----------CCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCC-----------CCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 5789999986 777765 89999999987 5655554 5788899999999999999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~~l~~h~~~V~~ 172 (689)
++.++ +.+..+.+|...+.++.+ ++.+|++++.++.+++|+.... ..+..+.+|...+..
T Consensus 95 ~~~~~-----------------~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (318)
T 4ggc_A 95 DVQQQ-----------------KRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCG 155 (318)
T ss_dssp ETTTT-----------------EEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEE
T ss_pred ecCCc-----------------eeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEE
Confidence 99987 788889999998887766 4679999999999999998875 566778899999999
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
+.|++++++|++++.|++|++||+++++.......... .....+..+.+++++..++.... ......+.+|+.....
T Consensus 156 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~ 232 (318)
T 4ggc_A 156 LRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT--QHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGA 232 (318)
T ss_dssp EEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEEC--CCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCC
T ss_pred EEEcCCCCEEEEEecCcceeEEECCCCcccccceeeec--ccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEeccccc
Confidence 99999999999999999999999988765433222111 12334888999998766553321 1223567788876655
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE--EeCCCcEEEEeCCCCCceE
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI--GSQDRTITVWTTASPRPLF 330 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las--gs~Dg~I~iwd~~~~~~~~ 330 (689)
... ...+...+..+.|++.+ ..+++ |+.|+.|+|||+.+++++.
T Consensus 233 ~~~-~~~~~~~v~~~~~~~~~---------------------------------~~~~~~sg~~d~~i~iwd~~~~~~~~ 278 (318)
T 4ggc_A 233 CLS-AVDAHSQVCSILWSPHY---------------------------------KELISGHGFAQNQLVIWKYPTMAKVA 278 (318)
T ss_dssp EEE-EEECSSCEEEEEEETTT---------------------------------TEEEEEECTTTCCEEEEETTTCCEEE
T ss_pred ccc-cccceeeeeeeeecccc---------------------------------cceEEEEEcCCCEEEEEECCCCcEEE
Confidence 543 34567789999998886 44444 4479999999999999998
Q ss_pred EecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 331 VAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 331 ~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
.+. .|.+.|++++|+|||++|++|+.||+|+|||+..
T Consensus 279 ~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 279 ELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 876 5899999999999999999999999999999854
No 80
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=9.9e-33 Score=292.39 Aligned_cols=292 Identities=15% Similarity=0.145 Sum_probs=234.6
Q ss_pred eeecCCCCcEEEEEEcCC----CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe--cCCCCEEEEEE
Q 040062 60 ATLRDHFGSVNCVRWAKH----GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR--GHTADVVDLNW 133 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspd----g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~ 133 (689)
....+|.+.|++++|+|+ ..++++++.++.|++||+.++... ..+..+. .|...|.+++|
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~ 77 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEI--------------RLLQSYVDADADENFYTCAW 77 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCE--------------EEEEEEECSCTTCCEEEEEE
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEE--------------EeeeeccccCCCCcEEEEEe
Confidence 344589999999999984 456666667779999999876321 2222222 26788999999
Q ss_pred cCC----CCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeec---
Q 040062 134 SPD----DSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRT--- 205 (689)
Q Consensus 134 spd----g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~--- 205 (689)
+|+ +.+|++++.|+.|++||+.+++.+..+.+|...|.+++|+| ++++|++++.||.|++||+++++....+
T Consensus 78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp EECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred ccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 999 66999999999999999999999999999999999999999 8999999999999999999998888776
Q ss_pred cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee----------------------------
Q 040062 206 DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF---------------------------- 257 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l---------------------------- 257 (689)
..+. ..+.+++|+|++++|++++.+ ..+.+|+.........+
T Consensus 158 ~~~~------~~v~~~~~~~~~~~l~~~~~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T 3k26_A 158 EGHR------DEVLSADYDLLGEKIMSCGMD----HSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTR 227 (366)
T ss_dssp TSCS------SCEEEEEECTTSSEEEEEETT----SCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEEC
T ss_pred cccc------CceeEEEECCCCCEEEEecCC----CCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccc
Confidence 3332 349999999999999998763 45677876654433222
Q ss_pred cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc---------
Q 040062 258 LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP--------- 328 (689)
Q Consensus 258 ~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~--------- 328 (689)
.+|...|.+++|+ + ++|++++.|+.|++||+.++..
T Consensus 228 ~~~~~~v~~~~~~--~---------------------------------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~ 272 (366)
T 3k26_A 228 DIHRNYVDCVRWL--G---------------------------------DLILSKSCENAIVCWKPGKMEDDIDKIKPSE 272 (366)
T ss_dssp SSCSSCCCEEEEE--T---------------------------------TEEEEECSSSEEEEEEESSTTCCGGGCCTTC
T ss_pred cCCcceEEEEEEc--C---------------------------------CEEEEEecCCEEEEEeCCCccccccccccCC
Confidence 2378888888886 2 6899999999999999987754
Q ss_pred -----eEEecccCCCCeEEEEEccC--CCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCc--cCceeeee
Q 040062 329 -----LFVAKHFFTQSVVDLSWSPD--GYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDV--RGRLANLA 399 (689)
Q Consensus 329 -----~~~~~~~h~~~V~~l~~spd--g~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~--~~~I~~l~ 399 (689)
+..+ ..|...|.+++|+|+ +++|++++.||.|++||+.+++...... ..+..| ...|.+++
T Consensus 273 ~~~~~~~~~-~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~---------~~~~~~~~~~~v~~~~ 342 (366)
T 3k26_A 273 SNVTILGRF-DYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKC---------TTLTHHKCGAAIRQTS 342 (366)
T ss_dssp CCEEEEEEE-ECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEE---------EEECCTTCCSCEEEEE
T ss_pred cchheeccc-cccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccc---------eEEcccccCCceEEEE
Confidence 3333 357888999999999 9999999999999999999876543111 123334 67899999
Q ss_pred cCchhhhhHhhccccceeeeeee
Q 040062 400 ETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 400 ~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
|+|++.+|++++.||.| +++.
T Consensus 343 ~s~~~~~l~s~~~dg~i--~iwd 363 (366)
T 3k26_A 343 FSRDSSILIAVCDDASI--WRWD 363 (366)
T ss_dssp ECTTSSEEEEEETTSEE--EEEE
T ss_pred eCCCCCeEEEEeCCCEE--EEEE
Confidence 99999999999999999 6554
No 81
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.1e-32 Score=289.01 Aligned_cols=306 Identities=13% Similarity=0.149 Sum_probs=237.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEE-EEEeC---CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYI-ASGSD---DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~L-asgs~---Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
...+.+|.+.|.+++|+|++..| ++++. |+.|+|||+.++. .......+|...|.+++|+
T Consensus 11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~----------------~~~~~~~~~~~~v~~~~~~ 74 (357)
T 3i2n_A 11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD----------------LKLLREIEKAKPIKCGTFG 74 (357)
T ss_dssp EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS----------------EEEEEEEEESSCEEEEECT
T ss_pred hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc----------------ccceeeecccCcEEEEEEc
Confidence 34457799999999999998655 56665 8999999998763 1223334789999999999
Q ss_pred CC---CCEEEEEeCCCeEEEEEcCCCe-EEEEEecCCCCeEEEEE------ccCCCEEEEEeCCCeEEEEECCCCc-cee
Q 040062 135 PD---DSILASGSLDNTIHIWNMSTGI-CTAVLRGHSSLVKGVAW------DPIGSFIASQSDDKTVIIWRTSDWS-LAH 203 (689)
Q Consensus 135 pd---g~~Lasgs~Dg~I~vwd~~~~~-~~~~l~~h~~~V~~l~~------spdg~~las~s~Dg~I~iwd~~~~~-~~~ 203 (689)
|+ +.+|++++.|+.|++||+.+++ .+..+.+|...|.++.| +|++++|++++.|+.|++||+++.. ...
T Consensus 75 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~ 154 (357)
T 3i2n_A 75 ATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVA 154 (357)
T ss_dssp TCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSE
T ss_pred CCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcce
Confidence 98 6999999999999999999988 88899999999999955 6789999999999999999999876 555
Q ss_pred eccCcccccCCcccEEEEE----EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcC---Ccccc
Q 040062 204 RTDGHWAKSLGSTFFRRLG----WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNH---SMFRR 276 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~----~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp---~~~~~ 276 (689)
.+..+... ....+.++. |+++++++++++. ...+.+|+....... ....|...+.+++|+| ++
T Consensus 155 ~~~~~~~~--~~~~v~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~-~~~~~~~~v~~~~~~~~~~~~--- 224 (357)
T 3i2n_A 155 NMEPVQGE--NKRDCWTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALR-WETNIKNGVCSLEFDRKDISM--- 224 (357)
T ss_dssp EECCCTTS--CCCCEEEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEE-EEEECSSCEEEEEESCSSSSC---
T ss_pred eccccCCC--CCCceEEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCcee-eecCCCCceEEEEcCCCCCCC---
Confidence 55443321 122467777 7899999999876 356778988776653 4467889999999998 54
Q ss_pred ccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEec----ccCCCCeEEEEEccCCC-e
Q 040062 277 NSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK----HFFTQSVVDLSWSPDGY-S 351 (689)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~spdg~-~ 351 (689)
.+|++++.||.|++||+++++.+..+. ..|...|++++|+|+++ +
T Consensus 225 ------------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 274 (357)
T 3i2n_A 225 ------------------------------NKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNREL 274 (357)
T ss_dssp ------------------------------CEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEE
T ss_pred ------------------------------CEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcE
Confidence 799999999999999998876654443 25789999999999998 8
Q ss_pred EEEEeCCCcEEEEEeeccccccccChHHHH------HHHHhccCCccCceeeeecCchhhhhH-hhccccceeeeeee
Q 040062 352 LFACSLDGTVANFHFEVKELGHRLSDAELD------ELKRSRYGDVRGRLANLAETPAQLLLE-AASAKETTTKKVVS 422 (689)
Q Consensus 352 L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~------~~~~~~~g~~~~~I~~l~~Spdg~~La-s~s~DG~v~~~~~~ 422 (689)
|++++.||.|++||++.+............ ......+..|.+.|.+++|+|++.+|+ +++.||.| +++.
T Consensus 275 l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i--~iw~ 350 (357)
T 3i2n_A 275 FLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTV--RVLI 350 (357)
T ss_dssp EEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEE--EEEE
T ss_pred EEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcE--EEEE
Confidence 999999999999999875433111000000 000023445778899999999999999 89999999 6654
No 82
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=2.4e-32 Score=292.92 Aligned_cols=291 Identities=13% Similarity=0.112 Sum_probs=232.0
Q ss_pred cceeeeeecCCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE
Q 040062 55 TQRLLATLRDHFGSVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW 133 (689)
Q Consensus 55 ~~~~~~~l~~h~~~V~~v~fspdg-~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 133 (689)
..+....+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.++.. .....+.+|...|.+++|
T Consensus 62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------~~~~~~~~h~~~v~~~~~ 126 (383)
T 3ei3_B 62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNK---------------TSFIQGMGPGDAITGMKF 126 (383)
T ss_dssp TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTC---------------EEEECCCSTTCBEEEEEE
T ss_pred ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccc---------------ceeeecCCcCCceeEEEe
Confidence 356677889999999999999999 9999999999999999987632 222333479999999999
Q ss_pred cC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecC---CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 134 SP-DDSILASGSLDNTIHIWNMSTGICTAVLRGH---SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 134 sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h---~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
+| ++.+|++++.|+.|++||+.. ..+..+..| ...|.+++|+|++++|++++.|+.|++||+ +++.+..+..+.
T Consensus 127 ~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~ 204 (383)
T 3ei3_B 127 NQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHK 204 (383)
T ss_dssp ETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSS
T ss_pred CCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCC
Confidence 99 678999999999999999986 555555544 488999999999999999999999999999 466666666554
Q ss_pred cccCCcccEEEEEEcCCCC-eEEEecCCCCCccccceeecCC----ceeeeeecCCCCCEEEEEEcC-Cccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGH-FITTTHGFQKPRHSAPVLERGE----WAATFDFLGHNAPIIVVKFNH-SMFRRNSASSQE 283 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~-~l~~~~~~~~~~~~~~i~~~~~----~~~~~~l~~h~~~v~~v~fsp-~~~~~~~~~~~~ 283 (689)
. .+.+++|+|++. ++++++. ...+.+|+... ......+ +|...|.+++|+| ++
T Consensus 205 ~------~v~~~~~~~~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~---------- 263 (383)
T 3ei3_B 205 A------KVTHAEFNPRCDWLMATSSV----DATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDS---------- 263 (383)
T ss_dssp S------CEEEEEECSSCTTEEEEEET----TSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTS----------
T ss_pred C------cEEEEEECCCCCCEEEEEeC----CCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCC----------
Confidence 3 399999999999 7777765 35677888765 3333333 7999999999999 75
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc------CC----------CCeEEEEEcc
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF------FT----------QSVVDLSWSP 347 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~------h~----------~~V~~l~~sp 347 (689)
.+|++++.|+.|++||+++++.+..+... |. ..+..++|+|
T Consensus 264 -----------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~ 320 (383)
T 3ei3_B 264 -----------------------TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP 320 (383)
T ss_dssp -----------------------CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC
T ss_pred -----------------------CEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC
Confidence 89999999999999999988776555421 11 3345567777
Q ss_pred CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 348 DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 348 dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
|+++ +++.||.|++||+.+++....+.. ..+.+.+..++|+||+.+|++++ ||.| +++.
T Consensus 321 dg~~--s~s~d~~i~iwd~~~~~~~~~l~~-----------~~~~~~~~~~~~s~~g~~l~s~s-d~~i--~iw~ 379 (383)
T 3ei3_B 321 DDQL--LLNDKRTIDIYDANSGGLVHQLRD-----------PNAAGIISLNKFSPTGDVLASGM-GFNI--LIWN 379 (383)
T ss_dssp CTTT--CTTCCCCEEEEETTTCCEEEEECB-----------TTBCSCCCEEEECTTSSEEEEEE-TTEE--EEEE
T ss_pred Cccc--ccCCCCeEEEEecCCCceeeeecC-----------CCCCceEEEEEEecCccEEEEec-CCcE--EEEe
Confidence 7776 778999999999998887654431 12455677789999999999997 8998 6654
No 83
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-31 Score=277.44 Aligned_cols=283 Identities=18% Similarity=0.122 Sum_probs=240.0
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+....+.+|.+.|++++| +++++|++++.||.|++||+.++ .....+..|...|.+++|+|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-----------------~~~~~~~~~~~~v~~~~~~~ 69 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-----------------WLGTVVYTGQGFLNSVCYDS 69 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSS-----------------EEEEEEEECSSCEEEEEEET
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-----------------EEEEEeecCCccEEEEEECC
Confidence 5788899999999999999 99999999999999999999876 67788889999999999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCC---eEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 136 DDSILASGSLDNTIHIWNMSTG---ICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 136 dg~~Lasgs~Dg~I~vwd~~~~---~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
++++|++++.|+.|++|++... +.+..+..|...|.+++| ++++|++++.|+.|++|| ..+....+..+..
T Consensus 70 ~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~-- 143 (313)
T 3odt_A 70 EKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNA-- 143 (313)
T ss_dssp TTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSS--
T ss_pred CCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCC--
Confidence 9999999999999999998754 667788999999999999 578999999999999999 5556666555433
Q ss_pred CCcccEEEEEEcC-CCCeEEEecCCCCCccccceeecCCceeeeeecC-CCCCEEEEEEcCCcccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSP-CGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVG 290 (689)
Q Consensus 213 ~~~~~i~~l~~sp-dg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~ 290 (689)
.+.++.|++ ++.++++++.+ ..+.+|+.. .....+.. |...+.+++|+|++
T Consensus 144 ----~v~~~~~~~~~~~~l~~~~~d----~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~~~----------------- 196 (313)
T 3odt_A 144 ----SVWDAKVVSFSENKFLTASAD----KTIKLWQND--KVIKTFSGIHNDVVRHLAVVDDG----------------- 196 (313)
T ss_dssp ----CEEEEEEEETTTTEEEEEETT----SCEEEEETT--EEEEEECSSCSSCEEEEEEEETT-----------------
T ss_pred ----ceeEEEEccCCCCEEEEEECC----CCEEEEecC--ceEEEEeccCcccEEEEEEcCCC-----------------
Confidence 388899988 88999888763 456788843 33344555 89999999999885
Q ss_pred ccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 291 WTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 291 ~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
. +++++.|+.|++||+++++.+..+. .|...|++++|+|++ .|++++.||.|++||+.+++
T Consensus 197 ----------------~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 197 ----------------H-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp ----------------E-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC
T ss_pred ----------------e-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc
Confidence 4 9999999999999999999888776 478899999999999 68999999999999999887
Q ss_pred cccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 371 LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 371 l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.... +..|...|.+++|+|++. |++++.||.| +++...
T Consensus 258 ~~~~-------------~~~~~~~i~~~~~~~~~~-~~~~~~dg~i--~iw~~~ 295 (313)
T 3odt_A 258 LKQV-------------ITLPAISIWSVDCMSNGD-IIVGSSDNLV--RIFSQE 295 (313)
T ss_dssp EEEE-------------EECSSSCEEEEEECTTSC-EEEEETTSCE--EEEESC
T ss_pred eeEE-------------EeccCceEEEEEEccCCC-EEEEeCCCcE--EEEeCC
Confidence 6533 334566899999999998 5579999999 776543
No 84
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=5e-32 Score=286.98 Aligned_cols=285 Identities=15% Similarity=0.203 Sum_probs=226.4
Q ss_pred eeeecCceEEEEEEcCC---CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 8 WVRHEGMQIFSIDVQPG---ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 8 ~~~H~g~~I~si~~spd---g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
+..|. ..|++++|+|+ |++|++|+.||.|+|||+... .......+.+|.+.|++++|+|++++|+++
T Consensus 35 ~~~h~-~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~ 104 (368)
T 3mmy_A 35 TSSPD-DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDS---------GQTIPKAQQMHTGPVLDVCWSDDGSKVFTA 104 (368)
T ss_dssp SSCCS-SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTT---------SCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccCCC-CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCC---------CceeEEEeccccCCEEEEEECcCCCEEEEE
Confidence 34677 69999999999 699999999999999999751 133447788999999999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE--cCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW--SPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~--spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
+.||.|++||+.++ +.. .+..|...|.+++| ++++.+|++++.|+.|++||+++++.+..
T Consensus 105 ~~dg~v~iwd~~~~-----------------~~~-~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 166 (368)
T 3mmy_A 105 SCDKTAKMWDLSSN-----------------QAI-QIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV 166 (368)
T ss_dssp ETTSEEEEEETTTT-----------------EEE-EEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE
T ss_pred cCCCcEEEEEcCCC-----------------Cce-eeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE
Confidence 99999999999876 333 35679999999999 89999999999999999999999999988
Q ss_pred EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 163 LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
+..|. .+.++.+. ...+++++.|+.+++|+++..........
T Consensus 167 ~~~~~-~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----------------------------------- 208 (368)
T 3mmy_A 167 LQLPE-RCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIE----------------------------------- 208 (368)
T ss_dssp EECSS-CEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECC-----------------------------------
T ss_pred EecCC-CceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcc-----------------------------------
Confidence 88665 56666655 56888999999999999976432211110
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
..+...+.++.+.+... .....+++++.|+.|++||
T Consensus 209 ---------------~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 209 ---------------SPLKHQHRCVAIFKDKQ-----------------------------NKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ---------------CSCSSCEEEEEEEECTT-----------------------------SCEEEEEEEETTSEEEEEE
T ss_pred ---------------ccccCCCceEEEcccCC-----------------------------CCCCeEEEecCCCcEEEEe
Confidence 01122333444433320 0124599999999999999
Q ss_pred CCCC---CceEEecccCCC------------CeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhc
Q 040062 323 TASP---RPLFVAKHFFTQ------------SVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSR 387 (689)
Q Consensus 323 ~~~~---~~~~~~~~~h~~------------~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~ 387 (689)
++.. ..+..+.. |.. .|++++|+|++++|++++.||.|++||+++++....
T Consensus 245 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~------------- 310 (368)
T 3mmy_A 245 INPPNPAKDNFTFKC-HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKT------------- 310 (368)
T ss_dssp SSCSCHHHHSEEEEC-SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEE-------------
T ss_pred cCCCCccccceeeee-eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEE-------------
Confidence 9987 34444443 343 699999999999999999999999999998877643
Q ss_pred cCCccCceeeeecCchhhhhHhhccccce
Q 040062 388 YGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 388 ~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
+..|...|.+++|+|||.+|++++.|+..
T Consensus 311 ~~~~~~~v~~~~~s~~g~~l~~~s~d~~~ 339 (368)
T 3mmy_A 311 SEQLDQPISACCFNHNGNIFAYASSYDWS 339 (368)
T ss_dssp CCCCSSCEEEEEECTTSSCEEEEECCCST
T ss_pred ecCCCCCceEEEECCCCCeEEEEeccccc
Confidence 33567789999999999999999999877
No 85
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=5.8e-32 Score=283.34 Aligned_cols=312 Identities=17% Similarity=0.201 Sum_probs=223.7
Q ss_pred cCceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--CCCEEE
Q 040062 5 KPSWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--HGRYIA 82 (689)
Q Consensus 5 k~~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--dg~~La 82 (689)
+....+|. ..|++|+|+|++++|++|+.||.|+|||+.... ...+....+.+|.+.|++++|+| ++++|+
T Consensus 4 ~~~~~gH~-~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~ 75 (351)
T 3f3f_A 4 QPFDSGHD-DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRAHDSSIVAIDWASPEYGRIIA 75 (351)
T ss_dssp CCEECCCS-SCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEECCSSCEEEEEECCGGGCSEEE
T ss_pred cccCcccc-cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------CcceecceeccCCCcEEEEEEcCCCCCCEEE
Confidence 34456788 599999999999999999999999999998511 12357788889999999999999 699999
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
+++.||.|++||+..+... .....|+....+..|...|.+++|+|+ +.+|++++.|+.|++||+++++.+
T Consensus 76 s~~~dg~v~vwd~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~ 147 (351)
T 3f3f_A 76 SASYDKTVKLWEEDPDQEE--------CSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDL 147 (351)
T ss_dssp EEETTSCEEEEEECTTSCT--------TSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCT
T ss_pred EEcCCCeEEEEecCCCccc--------ccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHh
Confidence 9999999999999876321 123445778889999999999999999 999999999999999999887643
Q ss_pred EEEe-------------cCCCCeEEEEEccC---CCEEEEEeCCCeEEEEECCCCcc--eeeccCcccccCCcccEEEEE
Q 040062 161 AVLR-------------GHSSLVKGVAWDPI---GSFIASQSDDKTVIIWRTSDWSL--AHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 161 ~~l~-------------~h~~~V~~l~~spd---g~~las~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~i~~l~ 222 (689)
..+. .|...+.+++|+|+ +.+|++++.|+.+.+|+...... ...+..+. ..+.+++
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~i~~~~ 221 (351)
T 3f3f_A 148 RSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHK------SLIRSIS 221 (351)
T ss_dssp TCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCC------SCEEEEE
T ss_pred ccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCC------cceeEEE
Confidence 3222 57889999999997 89999999999998888877665 44444443 3499999
Q ss_pred EcCCC----CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 223 WSPCG----HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 223 ~spdg----~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
|+|++ ++|++++. ...+.+|+............+........+.+...
T Consensus 222 ~~p~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------ 273 (351)
T 3f3f_A 222 WAPSIGRWYQLIATGCK----DGRIRIFKITEKLSPLASEESLTNSNMFDNSADVD------------------------ 273 (351)
T ss_dssp ECCCSSCSSEEEEEEET----TSCEEEEEEEECC----------------------------------------------
T ss_pred ECCCCCCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcccceeccCCCcccc------------------------
Confidence 99998 78888766 34567887665443333322222222222222210
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
........+.....+.+|+....+.+..+. .|...|++++|+|++++|++++.||.|++|++++++..
T Consensus 274 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~ 341 (351)
T 3f3f_A 274 -----MDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEF 341 (351)
T ss_dssp ----------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCE
T ss_pred -----cccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcch
Confidence 000112223344556677766666666655 57889999999999999999999999999999887554
No 86
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=1.6e-31 Score=288.89 Aligned_cols=293 Identities=20% Similarity=0.318 Sum_probs=230.2
Q ss_pred eEEEEEEcCCCCEEE-EEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFA-TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~La-tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~i 92 (689)
....++++|+...++ +++.||.|+||++.... .....+..+.+|.+.|++++|+| ++++|++|+.||.|+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~-------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~v 108 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTG-------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMV 108 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCE-------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCC-------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEE
Confidence 345688888875544 57889999999986511 11234566789999999999999 9999999999999999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCeEEEEE--ecCCCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMSTGICTAVL--RGHSSL 169 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~~~l--~~h~~~ 169 (689)
||+.++...... ......+.+|...|.+++|+|++ .+|++++.|+.|++||+.+++.+..+ ..|...
T Consensus 109 w~~~~~~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 178 (402)
T 2aq5_A 109 WEIPDGGLVLPL----------REPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT 178 (402)
T ss_dssp EECCTTCCSSCB----------CSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred EEccCCCCcccc----------CCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence 999876321111 13456778999999999999998 69999999999999999999999999 889999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
|.+++|+|++++|++++.|+.|++||+++++.+..+.
T Consensus 179 v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------------------------------------- 215 (402)
T 2aq5_A 179 IYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKD------------------------------------------- 215 (402)
T ss_dssp EEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE-------------------------------------------
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeec-------------------------------------------
Confidence 9999999999999999999999999998765544331
Q ss_pred CceeeeeecCCCCC-EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE---eCCCcEEEEeCCC
Q 040062 250 EWAATFDFLGHNAP-IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG---SQDRTITVWTTAS 325 (689)
Q Consensus 250 ~~~~~~~l~~h~~~-v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg---s~Dg~I~iwd~~~ 325 (689)
.+|.+. +..+.|+|++ .+|++| +.|+.|++||+++
T Consensus 216 --------~~~~~~~~~~~~~~~~~---------------------------------~~l~~g~~~~~d~~i~iwd~~~ 254 (402)
T 2aq5_A 216 --------RPHEGTRPVHAVFVSEG---------------------------------KILTTGFSRMSERQVALWDTKH 254 (402)
T ss_dssp --------CSSCSSSCCEEEECSTT---------------------------------EEEEEEECTTCCEEEEEEETTB
T ss_pred --------cCCCCCcceEEEEcCCC---------------------------------cEEEEeccCCCCceEEEEcCcc
Confidence 123333 6777888775 788888 7899999999998
Q ss_pred CCc-eEEecccCCCCeEEEEEccCCCeEEE-EeCCCcEEEEEeecccc-ccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 326 PRP-LFVAKHFFTQSVVDLSWSPDGYSLFA-CSLDGTVANFHFEVKEL-GHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 326 ~~~-~~~~~~~h~~~V~~l~~spdg~~L~s-gs~DG~I~vwd~~~~~l-~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
.+. +......|...+.+++|+|++++|++ ++.||.|++|++.+++. ...+ ..+. |...|.+++|+|
T Consensus 255 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l----------~~~~-~~~~v~~~~~sp 323 (402)
T 2aq5_A 255 LEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYL----------SMFS-SKESQRGMGYMP 323 (402)
T ss_dssp CSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEE----------EEEC-CSSCCSEEEECC
T ss_pred ccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEee----------cccc-cCCcccceEEec
Confidence 765 44444456778999999999999975 55799999999998763 2222 1122 456899999999
Q ss_pred hhhhhHhhccccceeeeeeec
Q 040062 403 AQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 403 dg~~Las~s~DG~v~~~~~~~ 423 (689)
++.+++++ |+.+ +++..
T Consensus 324 ~~~~~~s~--~~~~--~~~~l 340 (402)
T 2aq5_A 324 KRGLEVNK--CEIA--RFYKL 340 (402)
T ss_dssp GGGSCGGG--TEEE--EEEEE
T ss_pred ccccceec--ceeE--EEEEc
Confidence 99999875 4454 44443
No 87
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.7e-32 Score=286.90 Aligned_cols=271 Identities=19% Similarity=0.262 Sum_probs=197.8
Q ss_pred eecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--CCC
Q 040062 61 TLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--DDS 138 (689)
Q Consensus 61 ~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg~ 138 (689)
.+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.. ..+..+.+|...|.+++|++ +++
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------~~~~~l~gH~~~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------ILIADLRGHEGPVWQVAWAHPMYGN 72 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE---------------EEEEEEECCSSCEEEEEECCGGGSS
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc---------------EEEEEEcCCCccEEEEEeCCCCCCC
Confidence 4568999999999999999999999999999999986521 35677899999999999986 488
Q ss_pred EEEEEeCCCeEEEEEcCCC--eEEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 139 ILASGSLDNTIHIWNMSTG--ICTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 139 ~Lasgs~Dg~I~vwd~~~~--~~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
+|++++.|++|++||++++ +....+.+|...|.+++|+|+ +.+|++++.|++|++||++.........
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~-------- 144 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKK-------- 144 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECC--------
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceee--------
Confidence 9999999999999999886 467778899999999999998 7899999999999999987642210000
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
.+.+|...+.++.|+|+..... ... ..
T Consensus 145 -----------------------------------------~~~~h~~~v~~~~~~~~~~~~~------~~~-----~~- 171 (316)
T 3bg1_A 145 -----------------------------------------INNAHTIGCNAVSWAPAVVPGS------LID-----HP- 171 (316)
T ss_dssp -----------------------------------------BTTSSSSCBCCCEECCCCCC-----------------C-
T ss_pred -----------------------------------------eeccccCCcceEEEccccCCcc------ccc-----cc-
Confidence 1122334444444444321000 000 00
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCC---ceEEecccCCCCeEEEEEccCC----CeEEEEeCCCcEEEEEee
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPR---PLFVAKHFFTQSVVDLSWSPDG----YSLFACSLDGTVANFHFE 367 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~spdg----~~L~sgs~DG~I~vwd~~ 367 (689)
.......+.+|++|+.|+.|++||++... ++.. ...|...|.+++|+|++ ++|++++.||+|++|+++
T Consensus 172 ----~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~ 246 (316)
T 3bg1_A 172 ----SGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQK-LEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCD 246 (316)
T ss_dssp ----CSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEEC-CBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECS
T ss_pred ----cccCccccceEEEecCCCeEEEEEeCCCCccceeee-cccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEcc
Confidence 00001124689999999999999997653 3333 34688999999999987 889999999999999987
Q ss_pred ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 368 VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 368 ~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
......... .....|.+.|.+++|+|++.+|++++.||+| +++..
T Consensus 247 ~~~~~~~~~---------~~~~~~~~~v~~v~~sp~g~~las~~~D~~v--~lw~~ 291 (316)
T 3bg1_A 247 DASSNTWSP---------KLLHKFNDVVWHVSWSITANILAVSGGDNKV--TLWKE 291 (316)
T ss_dssp STTCCCCBC---------CEEEECSSCEEEEEECTTTCCEEEEESSSCE--EEEEE
T ss_pred Cccccchhh---------hhhhcCCCcEEEEEEcCCCCEEEEEcCCCeE--EEEEE
Confidence 632110000 1223466789999999999999999999999 66653
No 88
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=3.2e-31 Score=289.77 Aligned_cols=272 Identities=22% Similarity=0.400 Sum_probs=234.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..|+|+.| ++++|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++| ++++|++|+.||.|++|
T Consensus 134 ~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~-----------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 134 KGVYCLQY--DDQKIVSGLRDNTIKIWDKNT-----------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW 198 (435)
T ss_dssp CCEEEEEC--CSSEEEEEESSSCEEEEESSS-----------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred CcEEEEEE--CCCEEEEEeCCCeEEEEeCCC-----------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEE
Confidence 47999887 799999999999999999987 7888899999999999999 78899999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE---EEEecCCCCe
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT---AVLRGHSSLV 170 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~---~~l~~h~~~V 170 (689)
|+.++ +....+.+|...|.+++|+ +.+|++++.|+.|++||+.++... ..+.+|...|
T Consensus 199 d~~~~-----------------~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 199 DVNTG-----------------EMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp ESSSC-----------------CEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ECCCC-----------------cEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 99987 6778888999999999997 459999999999999999887654 6778899999
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE 250 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~ 250 (689)
.+++| ++++|++++.|+.|++||+++++.+..+..+... +.++.| ++.++++++. ...+.+|+...
T Consensus 260 ~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~------v~~~~~--~~~~l~~g~~----dg~i~iwd~~~ 325 (435)
T 1p22_A 260 NVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRG------IACLQY--RDRLVVSGSS----DNTIRLWDIEC 325 (435)
T ss_dssp EEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSC------EEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred EEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCc------EEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence 99999 6899999999999999999999998888766443 778888 5778888876 45678999988
Q ss_pred ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCC---
Q 040062 251 WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPR--- 327 (689)
Q Consensus 251 ~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~--- 327 (689)
......+.+|...|.++.| ++ .+|++|+.||.|++||+.++.
T Consensus 326 ~~~~~~~~~h~~~v~~~~~--~~---------------------------------~~l~sg~~dg~i~vwd~~~~~~~~ 370 (435)
T 1p22_A 326 GACLRVLEGHEELVRCIRF--DN---------------------------------KRIVSGAYDGKIKVWDLVAALDPR 370 (435)
T ss_dssp CCEEEEECCCSSCEEEEEC--CS---------------------------------SEEEEEETTSCEEEEEHHHHTSTT
T ss_pred CCEEEEEeCCcCcEEEEEe--cC---------------------------------CEEEEEeCCCcEEEEECCCCCCcc
Confidence 8888889999999999999 32 689999999999999997655
Q ss_pred ------ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 328 ------PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 328 ------~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
.+..+ ..|...|.+++| ++.+|++++.||.|++||+.+...
T Consensus 371 ~~~~~~~~~~~-~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~ 417 (435)
T 1p22_A 371 APAGTLCLRTL-VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPA 417 (435)
T ss_dssp SCTTTTEEEEE-CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC------
T ss_pred ccccchheeec-cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCC
Confidence 44544 468899999999 788999999999999999987654
No 89
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.5e-30 Score=283.43 Aligned_cols=277 Identities=21% Similarity=0.353 Sum_probs=243.6
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
+.+|. ..|++++|+ +.+|++|+.||.|++||+.+ ++.+..+.+|...|.++.|+ +++|++|+.|
T Consensus 155 ~~~h~-~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~-----------~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~d 218 (445)
T 2ovr_B 155 LVGHT-GGVWSSQMR--DNIIISGSTDRTLKVWNAET-----------GECIHTLYGHTSTVRCMHLH--EKRVVSGSRD 218 (445)
T ss_dssp CCCCS-SCEEEEEEE--TTEEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEE--TTEEEEEETT
T ss_pred EcCCC-CCEEEEEec--CCEEEEEeCCCeEEEEECCc-----------CcEEEEECCCCCcEEEEEec--CCEEEEEeCC
Confidence 44687 599999998 66999999999999999987 78889999999999999996 6789999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
|.|++||+.++ +....+.+|...|.+++| ++.+|++++.|+.|++||+.+++.+..+.+|.
T Consensus 219 g~i~~wd~~~~-----------------~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 279 (445)
T 2ovr_B 219 ATLRVWDIETG-----------------QCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 279 (445)
T ss_dssp SEEEEEESSSC-----------------CEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCS
T ss_pred CEEEEEECCCC-----------------cEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCC
Confidence 99999999887 577888899999999999 78899999999999999999999999999999
Q ss_pred CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee
Q 040062 168 SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE 247 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~ 247 (689)
..|.++.| ++.+|++++.|+.|++||+++++.+..+..+... +..+.+ +++++++++. ...+.+|+
T Consensus 280 ~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------v~~~~~--~~~~l~~~~~----dg~i~vwd 345 (445)
T 2ovr_B 280 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL------TSGMEL--KDNILVSGNA----DSTVKIWD 345 (445)
T ss_dssp SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC------EEEEEE--ETTEEEEEET----TSCEEEEE
T ss_pred CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCccc------EEEEEE--eCCEEEEEeC----CCeEEEEE
Confidence 99999999 7899999999999999999999988887765433 566665 5678888765 35677899
Q ss_pred cCCceeeeeecC---CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 248 RGEWAATFDFLG---HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 248 ~~~~~~~~~l~~---h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.........+.+ |...|.+++|++ ++|++|+.||.|++||+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~v~~~~~~~-----------------------------------~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 346 IKTGQCLQTLQGPNKHQSAVTCLQFNK-----------------------------------NFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp TTTCCEEEEECSTTSCSSCEEEEEECS-----------------------------------SEEEEEETTSEEEEEETT
T ss_pred CCCCcEEEEEccCCCCCCCEEEEEECC-----------------------------------CEEEEEeCCCeEEEEECC
Confidence 877777777765 889999999953 589999999999999999
Q ss_pred CCCceEEec----ccCCCCeEEEEEccCCCeEEEEeCCCc----EEEEEeec
Q 040062 325 SPRPLFVAK----HFFTQSVVDLSWSPDGYSLFACSLDGT----VANFHFEV 368 (689)
Q Consensus 325 ~~~~~~~~~----~~h~~~V~~l~~spdg~~L~sgs~DG~----I~vwd~~~ 368 (689)
+++.+..+. ..|...|.+++|+|++.+|++++.||+ |.+||++.
T Consensus 391 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 391 TGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp TCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 999888773 356788999999999999999999998 99999874
No 90
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9e-33 Score=295.26 Aligned_cols=296 Identities=14% Similarity=0.141 Sum_probs=222.2
Q ss_pred cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 63 RDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 63 ~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
..|.+.|++++|+|++++|++++.|+.|+|||+.++. |+....+.+|...|.+++|+|++++|++
T Consensus 8 ~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~s~~~~~l~s 72 (377)
T 3dwl_C 8 HILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNG---------------WKHARTFSDHDKIVTCVDWAPKSNRIVT 72 (377)
T ss_dssp EECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTE---------------EEECCCBCCCSSCEEEEEECTTTCCEEE
T ss_pred ecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCc---------------eEEEEEEecCCceEEEEEEeCCCCEEEE
Confidence 3467789999999999999999999999999998651 2455667789999999999999999999
Q ss_pred EeCCCeEEEEEcCCCe---EEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc---eeeccC-cccccCCc
Q 040062 143 GSLDNTIHIWNMSTGI---CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL---AHRTDG-HWAKSLGS 215 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~~---~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~---~~~~~~-~~~~~~~~ 215 (689)
++.|+.|++||+.+++ ....+..|...|.+++|+|++++|++++.|+.|++||+++.+. ...+.. + .
T Consensus 73 ~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h------~ 146 (377)
T 3dwl_C 73 CSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL------R 146 (377)
T ss_dssp EETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC------C
T ss_pred EeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc------C
Confidence 9999999999999877 6777888999999999999999999999999999999988763 445544 3 2
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecC------------------CceeeeeecCCCCCEEEEEEcCCccccc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG------------------EWAATFDFLGHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~------------------~~~~~~~l~~h~~~v~~v~fsp~~~~~~ 277 (689)
..+.+++|+|++++|++++.+ ..+.+|+.. .......+ +|...|.+++|+|++
T Consensus 147 ~~v~~~~~~~~~~~l~~~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~---- 217 (377)
T 3dwl_C 147 STILSLDWHPNNVLLAAGCAD----RKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSG---- 217 (377)
T ss_dssp SCEEEEEECTTSSEEEEEESS----SCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTS----
T ss_pred CCeEEEEEcCCCCEEEEEeCC----CEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCC----
Confidence 349999999999999998764 456677753 23344445 899999999999987
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc----eEEecccCCCCeEEEEEccCCCeEE
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP----LFVAKHFFTQSVVDLSWSPDGYSLF 353 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~----~~~~~~~h~~~V~~l~~spdg~~L~ 353 (689)
++|++++.|+.|++||+.+++. +..+. .|...|.+++|+|++++|+
T Consensus 218 -----------------------------~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~ 267 (377)
T 3dwl_C 218 -----------------------------NALAYAGHDSSVTIAYPSAPEQPPRALITVK-LSQLPLRSLLWANESAIVA 267 (377)
T ss_dssp -----------------------------SCEEEEETTTEEC-CEECSTTSCEEECCCEE-CSSSCEEEEEEEETTEEEE
T ss_pred -----------------------------CEEEEEeCCCcEEEEECCCCCCcceeeEeec-CCCCceEEEEEcCCCCEEE
Confidence 7999999999999999999887 44443 5788999999999999999
Q ss_pred EEeCCCcEEEEEeeccc--cccccC--------------------hHHH------HH-----------HHHhccCCccCc
Q 040062 354 ACSLDGTVANFHFEVKE--LGHRLS--------------------DAEL------DE-----------LKRSRYGDVRGR 394 (689)
Q Consensus 354 sgs~DG~I~vwd~~~~~--l~~~l~--------------------~~~~------~~-----------~~~~~~g~~~~~ 394 (689)
+++.|+.+ +|+..... +...+. .... .. ........|.+.
T Consensus 268 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~ 346 (377)
T 3dwl_C 268 AGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNM 346 (377)
T ss_dssp EESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSC
T ss_pred EEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccce
Confidence 99866655 67665221 111111 0000 00 001122348889
Q ss_pred eeeeecCchhh----hhHhhccccceeeeee
Q 040062 395 LANLAETPAQL----LLEAASAKETTTKKVV 421 (689)
Q Consensus 395 I~~l~~Spdg~----~Las~s~DG~v~~~~~ 421 (689)
|+++.+.++.. .|++++.||.| +++
T Consensus 347 i~~~~~~~~~~~~~~~~~s~g~Dg~i--~iW 375 (377)
T 3dwl_C 347 IATLRPYAGTPGNITAFTSSGTDGRV--VLW 375 (377)
T ss_dssp EEEEEEEEEETTEEEEEEEEETTSEE--EEE
T ss_pred eEEEeccCCCCCceEEEEeecCCCcE--EEe
Confidence 99999776554 59999999999 554
No 91
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=1.4e-31 Score=292.70 Aligned_cols=292 Identities=13% Similarity=0.147 Sum_probs=226.5
Q ss_pred eeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 57 RLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
........|...|+||+|+| ++++||+|+.||.|+|||+.++.. .....+.+|...|++|+|+|
T Consensus 110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~---------------~~~~~~~gH~~~V~~l~f~p 174 (435)
T 4e54_B 110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK---------------PTFIKGIGAGGSITGLKFNP 174 (435)
T ss_dssp TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC---------------CEEECCCSSSCCCCEEEECS
T ss_pred eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc---------------eeEEEccCCCCCEEEEEEeC
Confidence 44556677899999999999 677999999999999999987632 34555678999999999998
Q ss_pred -CCCEEEEEeCCCeEEEEEcCCCeEEEEEecC--CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 136 -DDSILASGSLDNTIHIWNMSTGICTAVLRGH--SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 136 -dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
++.+|++++.|++|++||+++.........| ...+.+++|+|++++|++++.||.|++||++. +.+..+..+..
T Consensus 175 ~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~~-- 251 (435)
T 4e54_B 175 LNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHKK-- 251 (435)
T ss_dssp SCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCSS--
T ss_pred CCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEecccc--
Confidence 6889999999999999999876554444433 34678999999999999999999999999964 44555555533
Q ss_pred CCcccEEEEEEcCCCCe-EEEecCCCCCccccceeecCCceee---eeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHF-ITTTHGFQKPRHSAPVLERGEWAAT---FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~-l~~~~~~~~~~~~~~i~~~~~~~~~---~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
.|.+++|+|++.. +++++. ...+.+|+....... ....+|...|.+++|+|++
T Consensus 252 ----~v~~v~~~p~~~~~~~s~s~----d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg--------------- 308 (435)
T 4e54_B 252 ----KVTHVALNPCCDWFLATASV----DQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG--------------- 308 (435)
T ss_dssp ----CEEEEEECTTCSSEEEEEET----TSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTS---------------
T ss_pred ----eEEeeeecCCCceEEEEecC----cceeeEEecccccccceEEEeeeccccccceeECCCC---------------
Confidence 3899999999875 445544 345678886654432 3346799999999999987
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccC-----CCCeEEEEEccCCCeEEEEe-------
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFF-----TQSVVDLSWSPDGYSLFACS------- 356 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~L~sgs------- 356 (689)
.+|++++.|+.|+|||+.++.....+.... ...+....|+|++.++++++
T Consensus 309 ------------------~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 370 (435)
T 4e54_B 309 ------------------ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFK 370 (435)
T ss_dssp ------------------SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred ------------------CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence 899999999999999999988776654311 11344567888887777764
Q ss_pred -----CCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeee-ecCchhhhhHhhccccceeeeeee
Q 040062 357 -----LDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANL-AETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 357 -----~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l-~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.++.|++||..++++.. ..++.|...|.++ +|||||.+|++|+ |++| +++.
T Consensus 371 ~~~~~~~~~i~iwd~~~g~~~~------------~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i--~iW~ 427 (435)
T 4e54_B 371 SCTPYELRTIDVFDGNSGKMMC------------QLYDPESSGISSLNEFNPMGDTLASAM-GYHI--LIWS 427 (435)
T ss_dssp CSSTTCCCCEEEECSSSCCEEE------------EECCSSCCCCCCEEEECTTSSCEEEEC-SSEE--EECC
T ss_pred EEEecCCCEEEEEECCCCcEEE------------EEeCCCCCcEEEEEEECCCCCEEEEEc-CCcE--EEEE
Confidence 24579999999887764 3344566678887 6999999999876 7777 6764
No 92
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-32 Score=299.21 Aligned_cols=320 Identities=9% Similarity=-0.009 Sum_probs=232.7
Q ss_pred CeeecCceeeec--CceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC
Q 040062 1 MIAEKPSWVRHE--GMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG 78 (689)
Q Consensus 1 M~~~k~~~~~H~--g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg 78 (689)
|++.|..-+... ...|.+++|+|||+++|+++.|++|+ |.+. ...+.+|...|.+++|+|+|
T Consensus 1 ~~~~~~~~~~~~~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~--------------~~~l~gh~~~v~~V~FsPdg 64 (588)
T 2j04_A 1 MKLLKDLLVDRKEFEDWKNNLTWARDGTLYLTTFPDISIG--QPKY--------------AKDINCNSKNLFHVKEFPLE 64 (588)
T ss_dssp -CCCBCEEECSCCCSSSSCCEEECTTSCEEEECSSSEEEE--EECC--------------CSCCSSBGGGTEEEEEECCC
T ss_pred CchhHhhcccHhHhhccEEEEEECCCCCEEEEEcCCceee--cccc--------------cceecCCCccEEEEEECCCC
Confidence 666555544332 14799999999999999999999999 6432 34457899999999999998
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI 158 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~ 158 (689)
.++.+.+|+.+... .+ .+ .|...|.+++|||||.+||+++.||.|++||...
T Consensus 65 -------~~~~~~~~~~~~~~---~~---------------~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-- 116 (588)
T 2j04_A 65 -------FENKLDFELAQQNG---LL---------------NS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-- 116 (588)
T ss_dssp -------CCCTTTTSCCCSSC---SS---------------TT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--
T ss_pred -------CcceEEEEeCCCce---Ee---------------ec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--
Confidence 45555555543221 11 11 3578899999999999999999999999999644
Q ss_pred EEEEEecCCC-----CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-------eeeccCcccccCCcccEEEEEEcCC
Q 040062 159 CTAVLRGHSS-----LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-------AHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 159 ~~~~l~~h~~-----~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-------~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
++..+. |.. .|.+++|+|||++|++++.||+|+|||+.++.. +..+..+... ....|.+++|+|+
T Consensus 117 ~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~g--h~~~V~sVawSPd 193 (588)
T 2j04_A 117 MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAG--SKDWVTHIVWYED 193 (588)
T ss_dssp EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTT--CCCCEEEEEEETT
T ss_pred eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeeccccc--ccccEEEEEEcCC
Confidence 666667 665 499999999999999999999999999998753 3444322211 2345999999999
Q ss_pred CCeEEEecCCCCCccccceeecCCcee---eeee-cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAA---TFDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~---~~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
| +++++. ...+++|+...... ...+ .+|...|..++|+ +
T Consensus 194 g--Laass~----D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g----------------------------- 236 (588)
T 2j04_A 194 V--LVAALS----NNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D----------------------------- 236 (588)
T ss_dssp E--EEEEET----TCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-----------------------------
T ss_pred c--EEEEeC----CCeEEEEECCCCccccceeeecccccCcEEEEEEE--C-----------------------------
Confidence 9 555544 46677887765442 2334 4788999999998 3
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEE--ccCCCeEEEEeCCCcEEEEEeecccc--ccccChH
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW--SPDGYSLFACSLDGTVANFHFEVKEL--GHRLSDA 378 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--spdg~~L~sgs~DG~I~vwd~~~~~l--~~~l~~~ 378 (689)
++||+++ ++.|++||+.+++...... +|...|.+++| +||++.|++++.||+ ++|.++.-.. ...+...
T Consensus 237 ----~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~~~~spd~~l~a~ 309 (588)
T 2j04_A 237 ----YKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDELHVTADNIIAPY 309 (588)
T ss_dssp ----TEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSSEEEECCCSSHHH
T ss_pred ----CEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeeccEEECCCceEEEE
Confidence 5888887 6999999999877643333 58999999999 999999999999999 9999742110 0000011
Q ss_pred HHHHH-HHh-------ccCCccCceeeeecCchhhhhHhhcc
Q 040062 379 ELDEL-KRS-------RYGDVRGRLANLAETPAQLLLEAASA 412 (689)
Q Consensus 379 ~~~~~-~~~-------~~g~~~~~I~~l~~Spdg~~Las~s~ 412 (689)
....+ +.. .+. +...|.+++|||||+.||+++.
T Consensus 310 ~d~~v~lW~~~g~~l~~~~-~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 310 LEKKFKKWSTIWNEFNNYE-TTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp HHHHHHHTTTTTTSSSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred cCCEEEEEECCCCceeeec-cceEEEEEEECCCCCEEEEEEe
Confidence 11111 111 111 1335899999999999998864
No 93
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=9.7e-31 Score=282.77 Aligned_cols=284 Identities=17% Similarity=0.275 Sum_probs=237.6
Q ss_pred cCCCCc--EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEcCCCCE
Q 040062 63 RDHFGS--VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSI 139 (689)
Q Consensus 63 ~~h~~~--V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~ 139 (689)
.+|... +.++.|++ ..+++++.|+.|++|++.++ +....+.. |...|.+++|+|++++
T Consensus 88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~-----------------~~~~~~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSG-----------------SVSALAETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTC-----------------CEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCC-----------------cEeEeeecCCCCCEEEEEECCCCCE
Confidence 355543 45577775 45888889999999999887 34444444 8899999999999999
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcccccCCcccE
Q 040062 140 LASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 140 Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i 218 (689)
|++++.||.|++||+.+++.+..+.+|...|.+++|+ +++|++++.|+.|++||++. ......+..+.. .+
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~v 220 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSS------EV 220 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS------CE
T ss_pred EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcCCCC------Ce
Confidence 9999999999999999999999999999999999994 67999999999999999984 455555555433 38
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
.++.|+|++++|++++.+ ..+.+|+.........+..|...|.+++|+|++
T Consensus 221 ~~~~~~~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~------------------------- 271 (401)
T 4aez_A 221 CGLAWRSDGLQLASGGND----NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQ------------------------- 271 (401)
T ss_dssp EEEEECTTSSEEEEEETT----SCEEEEETTCSSEEEEECCCSSCCCEEEECTTS-------------------------
T ss_pred eEEEEcCCCCEEEEEeCC----CeEEEccCCCCCccEEecCCcceEEEEEECCCC-------------------------
Confidence 999999999999998763 567899998888888888999999999999975
Q ss_pred cCccCCCCcEEEEEe--CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE--eCCCcEEEEEeeccccccc
Q 040062 299 GGKESQPYNVIAIGS--QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC--SLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 299 ~~~~s~~~~~lasgs--~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg--s~DG~I~vwd~~~~~l~~~ 374 (689)
..++++++ .|+.|++||+.+++.+..+. +...|.+++|+|++++|+++ +.||.|++|++.+++....
T Consensus 272 -------~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~ 342 (401)
T 4aez_A 272 -------SNLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQ 342 (401)
T ss_dssp -------TTEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEE
T ss_pred -------CCEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeE
Confidence 25777776 79999999999999888775 46789999999999999995 4899999999998655432
Q ss_pred cChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 375 LSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 375 l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.....|.+.|.+++|+||+.+|++++.||.| +++...
T Consensus 343 -----------~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i--~iw~~~ 379 (401)
T 4aez_A 343 -----------VDIPAHDTRVLYSALSPDGRILSTAASDENL--KFWRVY 379 (401)
T ss_dssp -----------EEEECCSSCCCEEEECTTSSEEEEECTTSEE--EEEECC
T ss_pred -----------EEecCCCCCEEEEEECCCCCEEEEEeCCCcE--EEEECC
Confidence 2233577789999999999999999999999 666543
No 94
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-31 Score=279.61 Aligned_cols=273 Identities=19% Similarity=0.250 Sum_probs=214.5
Q ss_pred eeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 57 RLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 57 ~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
+++..+.+|.+.|++++|+|++++|++|+.||.|+||++.... ++....+.+|...|.+++|+++
T Consensus 2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~---------------~~~~~~~~~h~~~v~~~~~~~~ 66 (379)
T 3jrp_A 2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET---------------HKLIDTLTGHEGPVWRVDWAHP 66 (379)
T ss_dssp ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECCG
T ss_pred CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc---------------ceeeeEecCCCCcEEEEEeCCC
Confidence 4567788999999999999999999999999999999997431 2677788999999999999987
Q ss_pred --CCEEEEEeCCCeEEEEEcCCCe--EEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCccc
Q 040062 137 --DSILASGSLDNTIHIWNMSTGI--CTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 137 --g~~Lasgs~Dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~ 210 (689)
+.+|++++.|+.|++||+.+++ .+..+..|...|.+++|+|+ +.+|++++.|+.|++||+++......
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~------ 140 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP------ 140 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCE------
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceee------
Confidence 8999999999999999999987 77888889999999999999 99999999999999999976432111
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVG 290 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~ 290 (689)
..+..|...|.+++|+|.......
T Consensus 141 --------------------------------------------~~~~~~~~~v~~~~~~~~~~~~~~------------ 164 (379)
T 3jrp_A 141 --------------------------------------------IIIDAHAIGVNSASWAPATIEEDG------------ 164 (379)
T ss_dssp --------------------------------------------EEEECCTTCEEEEEECCCC-----------------
T ss_pred --------------------------------------------EEecCCCCceEEEEEcCccccccc------------
Confidence 112356777888888875210000
Q ss_pred ccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE---EecccCCCCeEEEEEccC---CCeEEEEeCCCcEEEE
Q 040062 291 WTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF---VAKHFFTQSVVDLSWSPD---GYSLFACSLDGTVANF 364 (689)
Q Consensus 291 ~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spd---g~~L~sgs~DG~I~vw 364 (689)
.....+++.+|++++.|+.|++||++++.... .....|...|.+++|+|+ +.+|++++.||.|++|
T Consensus 165 --------~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 165 --------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp -------------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred --------cccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 00012245899999999999999998776432 223457889999999999 8999999999999999
Q ss_pred EeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 365 HFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 365 d~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
|+..++....... .....|...|.+++|+|++.+|++++.||.| +++...
T Consensus 237 d~~~~~~~~~~~~--------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i--~iw~~~ 286 (379)
T 3jrp_A 237 TQDNEQGPWKKTL--------LKEEKFPDVLWRASWSLSGNVLALSGGDNKV--TLWKEN 286 (379)
T ss_dssp EESSTTSCCEEEE--------SSSSCCSSCEEEEEECSSSCCEEEEESSSSE--EEEEEE
T ss_pred eCCCCCccceeee--------eccccCCCcEEEEEEcCCCCEEEEecCCCcE--EEEeCC
Confidence 9987642111000 2223366789999999999999999999999 666543
No 95
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.98 E-value=9.5e-32 Score=287.14 Aligned_cols=293 Identities=12% Similarity=0.075 Sum_probs=220.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCC-------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQ-------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS 138 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 138 (689)
..+|+|++|+||+++|++|+.|. .|++|++.......... ........+..|...|.+++++ +.
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~-------~~~~~~~~l~~~~~~v~s~~~~--~~ 84 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ-------FHILSEFALEDNDDSPTAIDAS--KG 84 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH-------EEEEEEEECCTTSCCCCEEEEE--TT
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee-------eeeeeEEEccCCCCceEEEEeC--CC
Confidence 45899999999999999997643 59999998764221100 0002234567888889888875 55
Q ss_pred EEEEE-----------eCCCeEEEEEcCCCeE-EE---EE-----ecCCCCeEEEEEccCCCEEEEEe--CCCeEEEEEC
Q 040062 139 ILASG-----------SLDNTIHIWNMSTGIC-TA---VL-----RGHSSLVKGVAWDPIGSFIASQS--DDKTVIIWRT 196 (689)
Q Consensus 139 ~Lasg-----------s~Dg~I~vwd~~~~~~-~~---~l-----~~h~~~V~~l~~spdg~~las~s--~Dg~I~iwd~ 196 (689)
.++++ +.|+.|++|++..... +. .. ..+...+++++|+|||++|++++ .|++|+|||+
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~ 164 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDP 164 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEET
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeEC
Confidence 66665 3577899999866432 21 11 12446689999999999987554 7899999999
Q ss_pred CCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee--eeeecCCCCCEEEEEEcCCcc
Q 040062 197 SDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA--TFDFLGHNAPIIVVKFNHSMF 274 (689)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~h~~~v~~v~fsp~~~ 274 (689)
.+++.+..+... ..|.+++|+|||+++++++.. .+.+|+...... .....+|...+.+++|+|++
T Consensus 165 ~~~~~~~~~~~~-------~~V~~v~fspdg~~l~s~s~~-----~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg- 231 (365)
T 4h5i_A 165 SDLTEKFEIETR-------GEVKDLHFSTDGKVVAYITGS-----SLEVISTVTGSCIARKTDFDKNWSLSKINFIADD- 231 (365)
T ss_dssp TTTEEEEEEECS-------SCCCEEEECTTSSEEEEECSS-----CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-
T ss_pred CCCcEEEEeCCC-------CceEEEEEccCCceEEeccce-----eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-
Confidence 999888877532 238899999999999998642 234454433332 33456788999999999987
Q ss_pred ccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC----cEEEEeCCCCCceE---EecccCCCCeEEEEEcc
Q 040062 275 RRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR----TITVWTTASPRPLF---VAKHFFTQSVVDLSWSP 347 (689)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg----~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~sp 347 (689)
.++++++.|+ .+++|++....... .....|...|++++|+|
T Consensus 232 --------------------------------~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp 279 (365)
T 4h5i_A 232 --------------------------------TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM 279 (365)
T ss_dssp --------------------------------EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred --------------------------------CEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence 7889888887 58889987664322 12235788999999999
Q ss_pred CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecccc
Q 040062 348 DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDVQA 426 (689)
Q Consensus 348 dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~~~ 426 (689)
||++|++|+.|++|+|||+++++.... ....|...|++++|||||++||++|.|++| +++.++.+
T Consensus 280 dg~~lasgs~D~~V~iwd~~~~~~~~~------------~~~gH~~~V~~v~fSpdg~~laS~S~D~tv--rvw~ip~~ 344 (365)
T 4h5i_A 280 KGELAVLASNDNSIALVKLKDLSMSKI------------FKQAHSFAITEVTISPDSTYVASVSAANTI--HIIKLPLN 344 (365)
T ss_dssp TSCEEEEEETTSCEEEEETTTTEEEEE------------ETTSSSSCEEEEEECTTSCEEEEEETTSEE--EEEECCTT
T ss_pred CCCceEEEcCCCEEEEEECCCCcEEEE------------ecCcccCCEEEEEECCCCCEEEEEeCCCeE--EEEEcCCC
Confidence 999999999999999999998876542 224588899999999999999999999999 88887654
No 96
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.98 E-value=2.7e-31 Score=290.31 Aligned_cols=307 Identities=14% Similarity=0.176 Sum_probs=227.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC------------CCEEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT------------ADVVDL 131 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l 131 (689)
.|.+.|++++|+|+|++||+|+.||.|+||++.++.... ......++....+.+|. ..|.++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~------~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l 99 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQ------SHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 99 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----------CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCC------cccccceeEecccccccccccccccccccCceEEE
Confidence 367899999999999999999999999999998763210 11223346788899998 889999
Q ss_pred EEcCCC--CEEEEEeCCCeEEEEEcCCCeEE---------------------------------------EE-EecCCCC
Q 040062 132 NWSPDD--SILASGSLDNTIHIWNMSTGICT---------------------------------------AV-LRGHSSL 169 (689)
Q Consensus 132 ~~spdg--~~Lasgs~Dg~I~vwd~~~~~~~---------------------------------------~~-l~~h~~~ 169 (689)
+|+|++ .+|++++.|+.|++||+.++... .. ..+|...
T Consensus 100 ~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 179 (447)
T 3dw8_B 100 RWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH 179 (447)
T ss_dssp EECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred EEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence 999998 79999999999999999764432 12 3679999
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcc-cccCCcccEEEEEEcCCC-CeEEEecCCCCCcccccee
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHW-AKSLGSTFFRRLGWSPCG-HFITTTHGFQKPRHSAPVL 246 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~-~~~~~~~~i~~l~~spdg-~~l~~~~~~~~~~~~~~i~ 246 (689)
|.+++|+|++++|+++ .|+.|++||+++ ......+.... ........+.+++|+|++ ++|++++.+ ..+.+|
T Consensus 180 v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~d----g~i~iw 254 (447)
T 3dw8_B 180 INSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSK----GTIRLC 254 (447)
T ss_dssp CCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETT----SCEEEE
T ss_pred eEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCC----CeEEEE
Confidence 9999999999999998 799999999984 33333221100 001123349999999999 888888763 567789
Q ss_pred ecCCcee----eeeecCCCC------------CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE
Q 040062 247 ERGEWAA----TFDFLGHNA------------PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA 310 (689)
Q Consensus 247 ~~~~~~~----~~~l~~h~~------------~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 310 (689)
+...... ...+.+|.. .|.+++|+|++ .+|+
T Consensus 255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g---------------------------------~~l~ 301 (447)
T 3dw8_B 255 DMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSG---------------------------------RYMM 301 (447)
T ss_dssp ETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTS---------------------------------SEEE
T ss_pred ECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCC---------------------------------CEEE
Confidence 8776654 556777775 89999999986 7999
Q ss_pred EEeCCCcEEEEeCCC-CCceEEecccCCCC---------------eEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 311 IGSQDRTITVWTTAS-PRPLFVAKHFFTQS---------------VVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 311 sgs~Dg~I~iwd~~~-~~~~~~~~~~h~~~---------------V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
+++. +.|++||+++ ++++..+.. |... +..++|+|++++|++++.||.|++||+.+++....
T Consensus 302 ~~~~-~~v~iwd~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~ 379 (447)
T 3dw8_B 302 TRDY-LSVKVWDLNMENRPVETYQV-HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL 379 (447)
T ss_dssp EEES-SEEEEEETTCCSSCSCCEES-CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE
T ss_pred EeeC-CeEEEEeCCCCccccceeec-cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee
Confidence 9999 9999999997 777666543 3321 33499999999999999999999999988765321
Q ss_pred cChHHHHH-------------------HHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 375 LSDAELDE-------------------LKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 375 l~~~~~~~-------------------~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
....+... ......-.+...|..++|+|++.+||+++.++..
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~ 440 (447)
T 3dw8_B 380 EASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNNLY 440 (447)
T ss_dssp ECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSCEE
T ss_pred eecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEecceee
Confidence 10000000 0000011234568999999999999999888743
No 97
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.98 E-value=9.3e-30 Score=280.09 Aligned_cols=296 Identities=22% Similarity=0.345 Sum_probs=241.3
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEc--CCCCEEEEEe
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWA--KHGRYIASGS 85 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs--pdg~~Lasgs 85 (689)
+.+|. ..|++++|++++ +|++|+.||.|++||+.+ ++.+..+.+|.+.|.+++|+ +++++|++++
T Consensus 158 ~~~h~-~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~-----------~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s 224 (464)
T 3v7d_B 158 LSGHD-GGVWALKYAHGG-ILVSGSTDRTVRVWDIKK-----------GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS 224 (464)
T ss_dssp ECCCS-SCEEEEEECSTT-EEEEEETTSCEEEEETTT-----------TEEEEEECCCSSCEEEEEEEESSSCEEEEEEE
T ss_pred EeCCC-cCEEEEEEcCCC-EEEEEeCCCCEEEEECCC-----------CcEEEEECCCCCccEEEEEecCCCCCEEEEEc
Confidence 34688 599999999998 999999999999999987 78889999999999999998 5789999999
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCC------CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPP------DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC 159 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~------~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~ 159 (689)
.|+.|++||+.+............. ..........+.+|...|.++ ++++.+|++++.|+.|++||+.+++.
T Consensus 225 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~ 302 (464)
T 3v7d_B 225 RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKC 302 (464)
T ss_dssp TTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEE
T ss_pred CCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcE
Confidence 9999999999887533222111000 011112467788999999988 45789999999999999999999999
Q ss_pred EEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
+..+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..+... +..+.|+ +.++++++.
T Consensus 303 ~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~------v~~~~~~--~~~l~s~s~---- 370 (464)
T 3v7d_B 303 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTAL------VGLLRLS--DKFLVSAAA---- 370 (464)
T ss_dssp EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCCSSC------EEEEEEC--SSEEEEEET----
T ss_pred EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCc------EEEEEEc--CCEEEEEeC----
Confidence 9999999999999999999999999999999999999999999888776544 8889987 578888776
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
...+.+|+.........+ .|...+..++|++++ .++++|+ |+.|+
T Consensus 371 dg~v~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~---------------------------------~~l~~~~-dg~i~ 415 (464)
T 3v7d_B 371 DGSIRGWDANDYSRKFSY-HHTNLSAITTFYVSD---------------------------------NILVSGS-ENQFN 415 (464)
T ss_dssp TSEEEEEETTTCCEEEEE-ECTTCCCEEEEEECS---------------------------------SEEEEEE-TTEEE
T ss_pred CCcEEEEECCCCceeeee-cCCCCccEEEEEeCC---------------------------------CEEEEec-CCeEE
Confidence 356779988876655544 366677778888776 7888888 89999
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
+||+++++.+......|...|.+++|+ +..++++++.||.+.+|-+
T Consensus 416 iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 416 IYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp EEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred EEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence 999999999887666788999999997 4455566677776665544
No 98
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-31 Score=309.81 Aligned_cols=259 Identities=24% Similarity=0.363 Sum_probs=216.4
Q ss_pred ceeeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC--CCEEEEE
Q 040062 7 SWVRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH--GRYIASG 84 (689)
Q Consensus 7 ~~~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd--g~~Lasg 84 (689)
.+.+|. .+|++++|+|++++|++|+.||.|+|||+.. ...+.+..+.+|.+.|++++|+++ +++|++|
T Consensus 4 ~l~gH~-~~V~~l~~s~dg~~latg~~dg~I~vwd~~~---------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~ 73 (753)
T 3jro_A 4 IANAHN-ELIHDAVLDYYGKRLATCSSDKTIKIFEVEG---------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASC 73 (753)
T ss_dssp ----CC-CCEEEECCCSSSCCEEEEETTTEEEEEEEET---------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEE
T ss_pred ecccCc-ceeEEEEECCCCCeEEEEECCCcEEEEecCC---------CCCccceeccCCcCceEEEEecCCCCCCEEEEE
Confidence 345788 5999999999999999999999999999873 126778889999999999999987 9999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCC--eEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD--DSILASGSLDNTIHIWNMSTG--ICT 160 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~--~~~ 160 (689)
+.||.|++||+.++. +.....+.+|...|.+++|+|+ +.+|++++.||.|++||+.++ ...
T Consensus 74 s~Dg~I~vwd~~~~~---------------~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 74 SYDGKVLIWKEENGR---------------WSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp ETTSCEEEEEEETTE---------------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred eCCCeEEEEECCCCc---------------ccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 999999999998761 2477788899999999999999 999999999999999999876 345
Q ss_pred EEEecCCCCeEEEEEcc-------------CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 161 AVLRGHSSLVKGVAWDP-------------IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~sp-------------dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
..+.+|...|.+++|+| ++.+|++++.||.|++||++++.....
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~----------------------- 195 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYV----------------------- 195 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEE-----------------------
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccce-----------------------
Confidence 56778999999999999 589999999999999999876422111
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
....+.+|...|.+++|+|+.. .+.
T Consensus 196 -------------------------~~~~~~~h~~~V~~l~~sp~~~------------------------------~~~ 220 (753)
T 3jro_A 196 -------------------------LESTLEGHSDWVRDVAWSPTVL------------------------------LRS 220 (753)
T ss_dssp -------------------------EEEEECCCSSCEEEEEECCCCS------------------------------SSE
T ss_pred -------------------------eeeeecCCCCcEEEEEeccCCC------------------------------CCC
Confidence 1123557899999999999810 028
Q ss_pred EEEEEeCCCcEEEEeCCCCCce----EEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 308 VIAIGSQDRTITVWTTASPRPL----FVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~----~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
+|++++.||.|++||+.++... ......|...|++++|+|+|++|++++.||.|++|++..
T Consensus 221 ~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 221 YLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp EEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred EEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 9999999999999999886421 111234678899999999999999999999999999984
No 99
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.2e-30 Score=270.03 Aligned_cols=281 Identities=17% Similarity=0.204 Sum_probs=218.8
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--CC
Q 040062 60 ATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--DD 137 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--dg 137 (689)
..+.+|.+.|++++|+|++++|++++.||.|++||+.++. ..++....+.+|...|.+++|+| |+
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------------~~~~~~~~~~~~~~~v~~~~~~~~~d~ 71 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------------SNWELSDSWRAHDSSIVAIDWASPEYG 71 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------------CCEEEEEEEECCSSCEEEEEECCGGGC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------------CcceecceeccCCCcEEEEEEcCCCCC
Confidence 4567899999999999999999999999999999998653 12356778889999999999999 69
Q ss_pred CEEEEEeCCCeEEEEEcCCC---------eEEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 138 SILASGSLDNTIHIWNMSTG---------ICTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 138 ~~Lasgs~Dg~I~vwd~~~~---------~~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.+|++++.|+.|++||+.++ +.+..+..|...|.+++|+|+ +++|++++.|+.|++||+++++.+..+.
T Consensus 72 ~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~ 151 (351)
T 3f3f_A 72 RIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWT 151 (351)
T ss_dssp SEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCE
T ss_pred CEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccc
Confidence 99999999999999999887 668888999999999999999 9999999999999999998876654433
Q ss_pred CcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccc
Q 040062 207 GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286 (689)
Q Consensus 207 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~ 286 (689)
.... +.. .......|...+.++.|+|+.+
T Consensus 152 ~~~~-------~~~--------------------------------~~~~~~~~~~~~~~~~~~p~~~------------ 180 (351)
T 3f3f_A 152 LTSE-------MKV--------------------------------LSIPPANHLQSDFCLSWCPSRF------------ 180 (351)
T ss_dssp EEEE-------EES--------------------------------CSCCCSSCSCCCEEEEECCCSS------------
T ss_pred cccc-------ccc--------------------------------cccccCCcccceeEEEeccCCC------------
Confidence 2100 000 0011235778899999998731
Q ss_pred ccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce-EEecccCCCCeEEEEEccCC----CeEEEEeCCCcE
Q 040062 287 APVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL-FVAKHFFTQSVVDLSWSPDG----YSLFACSLDGTV 361 (689)
Q Consensus 287 ~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l~~spdg----~~L~sgs~DG~I 361 (689)
.+.++++++.|+.+.+|+...++.. ......|...|++++|+|++ ++|++++.||.|
T Consensus 181 ------------------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i 242 (351)
T 3f3f_A 181 ------------------SPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRI 242 (351)
T ss_dssp ------------------SCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCE
T ss_pred ------------------CCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeE
Confidence 2379999999999988888777652 22234588999999999998 899999999999
Q ss_pred EEEEeeccccccccChHHHHH---------------------------------HHHhccCCccCceeeeecCchhhhhH
Q 040062 362 ANFHFEVKELGHRLSDAELDE---------------------------------LKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 362 ~vwd~~~~~l~~~l~~~~~~~---------------------------------~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
++||+..+............. .....+..|.+.|++++|+|++.+|+
T Consensus 243 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~ 322 (351)
T 3f3f_A 243 RIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILS 322 (351)
T ss_dssp EEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEE
T ss_pred EEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEE
Confidence 999998754322111000000 00122445778899999999999999
Q ss_pred hhccccceeeeeeecc
Q 040062 409 AASAKETTTKKVVSDV 424 (689)
Q Consensus 409 s~s~DG~v~~~~~~~~ 424 (689)
+++.||.| +++...
T Consensus 323 s~~~dg~v--~iw~~~ 336 (351)
T 3f3f_A 323 SAGDDGKV--RLWKAT 336 (351)
T ss_dssp EEETTSCE--EEEEEC
T ss_pred EecCCCcE--EEEecC
Confidence 99999999 766543
No 100
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.4e-31 Score=295.25 Aligned_cols=291 Identities=7% Similarity=0.003 Sum_probs=213.5
Q ss_pred eecCceEEEEEEcCC------CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE
Q 040062 10 RHEGMQIFSIDVQPG------ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 10 ~H~g~~I~si~~spd------g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las 83 (689)
.|+...|.+|+|+|+ +.+||+++.||+|+|||+...................+.+|.+.|++++|++++ +|++
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las 282 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC 282 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence 343358999999997 579999999999999999752110000000112345678999999999999864 8999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEE--EEcCCC-CEEEEEeCCCeEEEEEcCCCeEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDL--NWSPDD-SILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l--~~spdg-~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
|+.||+|++||+.++. .....+.+|...|.++ +|++++ .+|++++.|++|+|||+++++++
T Consensus 283 gs~DgtV~lWD~~~~~----------------~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~ 346 (524)
T 2j04_B 283 GFKNGFVAEFDLTDPE----------------VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATT 346 (524)
T ss_dssp EETTSEEEEEETTBCS----------------SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHH
T ss_pred EeCCCEEEEEECCCCC----------------CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcc
Confidence 9999999999998652 2334577899999999 578887 89999999999999999998877
Q ss_pred EEEecCCC--CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 161 AVLRGHSS--LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 161 ~~l~~h~~--~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
..+.+|.. .|.+++|+|+++.|++++.|++|++||++++.+...+..+... |.+++|+|+|++|++++.+
T Consensus 347 ~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~------V~sva~Sp~g~~l~Sgs~D-- 418 (524)
T 2j04_B 347 KTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETT------ITAIGVSRLHPMVLAGSAD-- 418 (524)
T ss_dssp CEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSC------EEEEECCSSCCBCEEEETT--
T ss_pred cccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCc------eEEEEeCCCCCeEEEEECC--
Confidence 77776653 5889999999999999999999999999998887777666443 9999999999999998764
Q ss_pred CccccceeecCCceeeeeecCC--------CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE
Q 040062 239 PRHSAPVLERGEWAATFDFLGH--------NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA 310 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h--------~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 310 (689)
..+.+|+.... .+..| ...+..++|+|++ ..+
T Consensus 419 --gtv~lwd~~~~----~~~~~~~~~~~~~~~~v~~v~~sp~g---------------------------------~~~- 458 (524)
T 2j04_B 419 --GSLIITNAARR----LLHGIKNSSATQKSLRLWKWDYSIKD---------------------------------DKY- 458 (524)
T ss_dssp --TEEECCBSCSS----TTTCC------CCCCEEEECBCCSSS---------------------------------CEE-
T ss_pred --CEEEEEechHh----hccccccCccceeeeEEEEeccCCCC---------------------------------CeE-
Confidence 45567765332 11222 1245677888775 333
Q ss_pred EEeCCCcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCC---eEEEEeCCCcEEEEEeec
Q 040062 311 IGSQDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGY---SLFACSLDGTVANFHFEV 368 (689)
Q Consensus 311 sgs~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~---~L~sgs~DG~I~vwd~~~ 368 (689)
.... .+.+|+.. ++..+..+. .|...|.+++|+|++. +|++|+.||.|+||++.-
T Consensus 459 ~~~~--~~~~~~~~~~g~~~~~l~-gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 459 RIDS--SYEVYPLTVNDVSKAKID-AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp EECC--CCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred EccC--CceecccccCCcceeeec-CCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2222 23344333 344444443 5788999999999964 999999999999999863
No 101
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.98 E-value=7.5e-30 Score=277.63 Aligned_cols=276 Identities=18% Similarity=0.294 Sum_probs=227.6
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEE--EEecCCCCEEEEEEcCCCCEEEEEeC
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM--TLRGHTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~l~~spdg~~Lasgs~ 145 (689)
.++.|+||++ ++||+|. |++|+|||..++ +... .+.+|...|++|+|+|++++|++|+.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~ 167 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTS 167 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEEC
Confidence 4678999975 4777765 899999999987 3444 34567888999999999999999999
Q ss_pred CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc-ceeeccCcccccCCcccEEEEEEc
Q 040062 146 DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS-LAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
|+.|+|||+.+++.+..+.+|...+.+++|+ +.+|++++.|+.+++||..... .+..+..+.. .+..+.|+
T Consensus 168 Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~------~~~~~~~~ 239 (420)
T 4gga_A 168 SAEVQLWDVQQQKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ------EVCGLRWA 239 (420)
T ss_dssp TSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSS------CEEEEEEC
T ss_pred CCeEEEEEcCCCcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEeccccc------ceeeeeec
Confidence 9999999999999999999999999988875 7899999999999999987644 3344454433 38899999
Q ss_pred CCCCeEEEecCCCCCccccceeecCCce----eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 225 PCGHFITTTHGFQKPRHSAPVLERGEWA----ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
+++.+++++..+ ..+.+|+..... .......|...|.+++|+|..
T Consensus 240 ~~g~~l~s~~~D----~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~--------------------------- 288 (420)
T 4gga_A 240 PDGRHLASGGND----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ--------------------------- 288 (420)
T ss_dssp TTSSEEEEEETT----SCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTC---------------------------
T ss_pred CCCCeeeeeecc----ccceEEeeccccccceeeeeecccCCceeeeeeCCCc---------------------------
Confidence 999999998764 445577654432 344567899999999999985
Q ss_pred ccCCCCcEEEE--EeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe--CCCcEEEEEeeccccccccC
Q 040062 301 KESQPYNVIAI--GSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS--LDGTVANFHFEVKELGHRLS 376 (689)
Q Consensus 301 ~~s~~~~~las--gs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~DG~I~vwd~~~~~l~~~l~ 376 (689)
..++++ |+.|+.|++||+.+++.+..+.. ...+.++.|+++++.|++++ .||.|+|||+.+++...
T Consensus 289 -----~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~--~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~--- 358 (420)
T 4gga_A 289 -----SNVLATGGGTSDRHIRIWNVCSGACLSAVDA--HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA--- 358 (420)
T ss_dssp -----TTEEEEEECTTTCEEEEEETTTTEEEEEEEC--SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEE---
T ss_pred -----ccEEEEEeecCCCEEEEEeCCccccceeecc--ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEE---
Confidence 255655 45799999999999998887764 56799999999999998865 79999999999887764
Q ss_pred hHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 377 DAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 377 ~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
.+.+|.+.|.+++|||||.+|++++.||+| +++..
T Consensus 359 ----------~l~gH~~~V~~l~~spdg~~l~S~s~D~tv--riWdv 393 (420)
T 4gga_A 359 ----------ELKGHTSRVLSLTMSPDGATVASAAADETL--RLWRC 393 (420)
T ss_dssp ----------EECCCSSCEEEEEECTTSSCEEEEETTTEE--EEECC
T ss_pred ----------EEcCCCCCEEEEEEcCCCCEEEEEecCCeE--EEEEC
Confidence 334688899999999999999999999999 88864
No 102
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.3e-31 Score=289.32 Aligned_cols=276 Identities=11% Similarity=0.122 Sum_probs=219.9
Q ss_pred eecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--C--CCCcEEEEE--EcCCCCEEEE
Q 040062 10 RHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--D--HFGSVNCVR--WAKHGRYIAS 83 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--~--h~~~V~~v~--fspdg~~Las 83 (689)
.|. ..|++++|+|++++|++|+.||.|+|||+................+..+. . +...+.++. +++++.+|++
T Consensus 109 ~h~-~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 187 (437)
T 3gre_A 109 DCS-STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVA 187 (437)
T ss_dssp ECS-SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEE
T ss_pred cCC-CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEE
Confidence 566 69999999999999999999999999999520000000000011222222 2 566788887 6688999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec--CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG--HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
++.|+.|++||+.++ +.+..+.. |...|.+++|+|++.+|++++.|+.|++||+++++.+.
T Consensus 188 ~~~d~~i~iwd~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 250 (437)
T 3gre_A 188 LTNLSRVIIFDIRTL-----------------ERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR 250 (437)
T ss_dssp EETTSEEEEEETTTC-----------------CEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred EeCCCeEEEEeCCCC-----------------eeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence 999999999999887 57777877 89999999999999999999999999999999999999
Q ss_pred EEe-cCCCCeEEEEEcc----CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 162 VLR-GHSSLVKGVAWDP----IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 162 ~l~-~h~~~V~~l~~sp----dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
.+. .|...|.+++|+| ++.+|++++.|+.|++||+++++.+..+..+... +..+.|+|+++.+.
T Consensus 251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~------~~~~~~~~~~~~l~----- 319 (437)
T 3gre_A 251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQ------PSMEHFLPIEKGLE----- 319 (437)
T ss_dssp EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSC------CCGGGGSCBCSSGG-----
T ss_pred EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCC------Cccceecccccccc-----
Confidence 886 7888999996665 5779999999999999999999888887765433 34445666654441
Q ss_pred CCCccccceeecCCceeeeeecC--CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLG--HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ 314 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~--h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~ 314 (689)
...+.+ |...|.+++|+ ++ .+|++|+.
T Consensus 320 -----------------~~~~~~~~~~~~v~~l~~~-~~---------------------------------~~l~s~~~ 348 (437)
T 3gre_A 320 -----------------ELNFCGIRSLNALSTISVS-ND---------------------------------KILLTDEA 348 (437)
T ss_dssp -----------------GCCCCCCCSGGGGCCEEEE-TT---------------------------------EEEEEEGG
T ss_pred -----------------cceecccccCCceEEEEEC-Cc---------------------------------eEEEecCC
Confidence 011334 88899999998 43 79999999
Q ss_pred CCcEEEEeCCCCCceEEeccc------------------------------------CCCCeEEEEEccC--CCeEEEEe
Q 040062 315 DRTITVWTTASPRPLFVAKHF------------------------------------FTQSVVDLSWSPD--GYSLFACS 356 (689)
Q Consensus 315 Dg~I~iwd~~~~~~~~~~~~~------------------------------------h~~~V~~l~~spd--g~~L~sgs 356 (689)
|+.|++||+.+++.+..+... |...|++++|+++ +.+|++|+
T Consensus 349 d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~ 428 (437)
T 3gre_A 349 TSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACD 428 (437)
T ss_dssp GTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEE
T ss_pred CCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEc
Confidence 999999999998877766542 7889999999998 78999999
Q ss_pred CCCcEEEEE
Q 040062 357 LDGTVANFH 365 (689)
Q Consensus 357 ~DG~I~vwd 365 (689)
.||.|+||+
T Consensus 429 ~dG~I~iw~ 437 (437)
T 3gre_A 429 NSGLIGIFQ 437 (437)
T ss_dssp TTSCEEEEC
T ss_pred CCceEEEeC
Confidence 999999994
No 103
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=9.3e-31 Score=281.52 Aligned_cols=312 Identities=16% Similarity=0.205 Sum_probs=242.8
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCc
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDI 112 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~ 112 (689)
++.+++|+++. .+....+.+|.+.|++++|+| ++++|++|+.||.|++||+.++.....+..
T Consensus 22 ~~~~~v~~~~~-----------~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~------ 84 (408)
T 4a11_B 22 ESTRRVLGLEL-----------NKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTC------ 84 (408)
T ss_dssp HHHHHHHTEEE-----------CTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEE------
T ss_pred cCcceeecccc-----------CcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEec------
Confidence 34567777765 566777888999999999999 999999999999999999998743221100
Q ss_pred ccceEEEEE-----ecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC---CEEE
Q 040062 113 ENWKVAMTL-----RGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG---SFIA 183 (689)
Q Consensus 113 ~~~~~~~~l-----~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg---~~la 183 (689)
...... .+|...|.+++|+| ++.+|++++.|+.|++||+.+++....+. +...+.++.|++.+ .+|+
T Consensus 85 ---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 160 (408)
T 4a11_B 85 ---KAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVA 160 (408)
T ss_dssp ---CEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEE
T ss_pred ---cccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEE
Confidence 011111 25999999999999 77799999999999999999999988887 78889999999954 5999
Q ss_pred EEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCe-EEEecCCCCCccccceeecCCce-eeee-----
Q 040062 184 SQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHF-ITTTHGFQKPRHSAPVLERGEWA-ATFD----- 256 (689)
Q Consensus 184 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~-l~~~~~~~~~~~~~~i~~~~~~~-~~~~----- 256 (689)
+++.|+.|++||+++++....+..+... +.+++|+|++.+ +++++. ...+.+|+..... ....
T Consensus 161 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~------v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~~~~~~~~~~~~ 230 (408)
T 4a11_B 161 VGTRGPKVQLCDLKSGSCSHILQGHRQE------ILAVSWSPRYDYILATASA----DSRVKLWDVRRASGCLITLDQHN 230 (408)
T ss_dssp EEESSSSEEEEESSSSCCCEEECCCCSC------EEEEEECSSCTTEEEEEET----TSCEEEEETTCSSCCSEECCTTT
T ss_pred EEcCCCeEEEEeCCCcceeeeecCCCCc------EEEEEECCCCCcEEEEEcC----CCcEEEEECCCCCcccccccccc
Confidence 9999999999999999888887765443 899999999996 666654 3456677765443 1111
Q ss_pred ----------ecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC
Q 040062 257 ----------FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP 326 (689)
Q Consensus 257 ----------l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~ 326 (689)
+..|...|.+++|+|++ ++|++++.|+.|++||+.++
T Consensus 231 ~~~~~~~~~~~~~~~~~v~~~~~~~~~---------------------------------~~l~~~~~dg~i~vwd~~~~ 277 (408)
T 4a11_B 231 GKKSQAVESANTAHNGKVNGLCFTSDG---------------------------------LHLLTVGTDNRMRLWNSSNG 277 (408)
T ss_dssp TCSCCCTTTSSCSCSSCEEEEEECTTS---------------------------------SEEEEEETTSCEEEEETTTC
T ss_pred cccceeeccccccccCceeEEEEcCCC---------------------------------CEEEEecCCCeEEEEECCCC
Confidence 25788999999999986 89999999999999999988
Q ss_pred CceEEeccc----CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 327 RPLFVAKHF----FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 327 ~~~~~~~~~----h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
+........ ....+........+..+++++.|+.|++||+.+++... .+..|.+.|.+++|+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~-------------~~~~~~~~v~~~~~s~ 344 (408)
T 4a11_B 278 ENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQIT-------------MLKGHYKTVDCCVFQS 344 (408)
T ss_dssp CBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEE-------------EECCCSSCEEEEEEET
T ss_pred ccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCccee-------------eeccCCCeEEEEEEcC
Confidence 765543321 11122222333445667777889999999999887663 3345778899999999
Q ss_pred hhhhhHhhccccceeeeeeecc
Q 040062 403 AQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 403 dg~~Las~s~DG~v~~~~~~~~ 424 (689)
++.+|++++.||.| +++...
T Consensus 345 ~~~~l~s~~~dg~i--~iw~~~ 364 (408)
T 4a11_B 345 NFQELYSGSRDCNI--LAWVPS 364 (408)
T ss_dssp TTTEEEEEETTSCE--EEEEEC
T ss_pred CCCEEEEECCCCeE--EEEeCC
Confidence 99999999999999 666543
No 104
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.3e-30 Score=284.34 Aligned_cols=284 Identities=10% Similarity=0.041 Sum_probs=216.2
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCC---CC--CCCCcc-----------------------------------
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVG---KN--FENDES----------------------------------- 54 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~---~~--~~~~~~----------------------------------- 54 (689)
+|.+++|++||++|+++. ++.|++||+.+.. .. +.....
T Consensus 6 p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAII-KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI 84 (450)
T ss_dssp CCCEEEECSSSSEEEEEE-TTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred cEEEEEecCCCCEEEEEe-CCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence 799999999999776664 6899999987632 00 000000
Q ss_pred ------cceeeeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcC--CCCCccccCCCCCCCcccceEEEEEe--c
Q 040062 55 ------TQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSDDQVILIHEKK--PGSGTTEFGSGEPPDIENWKVAMTLR--G 123 (689)
Q Consensus 55 ------~~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~Dg~I~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~l~--~ 123 (689)
..........|.+.|.+++|+|++++| ++++.||.|+|||+. ++ .....+. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~-----------------~~~~~~~~~~ 147 (450)
T 2vdu_B 85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK-----------------NVLKLRKRFC 147 (450)
T ss_dssp ---------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS-----------------SCEEEEEEEE
T ss_pred cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC-----------------ceeeeeeccc
Confidence 000001122466689999999999996 899999999999998 55 2334443 5
Q ss_pred CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEE----EEecCCCCeEEEEEccC---CCEEEEEeCCCeEEEEEC
Q 040062 124 HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTA----VLRGHSSLVKGVAWDPI---GSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 124 h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~----~l~~h~~~V~~l~~spd---g~~las~s~Dg~I~iwd~ 196 (689)
|...|.+++|+|++++|++++.|+.|++|++.++.... .+.+|...|.+++|+|+ +++|++++.|++|++||+
T Consensus 148 ~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~ 227 (450)
T 2vdu_B 148 FSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHY 227 (450)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEE
T ss_pred CCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEEC
Confidence 77899999999999999999999999999998876543 67789999999999999 999999999999999998
Q ss_pred CCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccc
Q 040062 197 SDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRR 276 (689)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~ 276 (689)
++++.+..+ +.+|...|.+++|+ ++
T Consensus 228 ~~~~~~~~~---------------------------------------------------~~~h~~~v~~~~~s-d~--- 252 (450)
T 2vdu_B 228 PQCFIVDKW---------------------------------------------------LFGHKHFVSSICCG-KD--- 252 (450)
T ss_dssp SCTTCEEEE---------------------------------------------------CCCCSSCEEEEEEC-ST---
T ss_pred CCCceeeee---------------------------------------------------ecCCCCceEEEEEC-CC---
Confidence 765433221 23578899999998 75
Q ss_pred ccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc----------------------
Q 040062 277 NSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH---------------------- 334 (689)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~---------------------- 334 (689)
.+|++++.|+.|++||+.+++.+..+..
T Consensus 253 ------------------------------~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (450)
T 2vdu_B 253 ------------------------------YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNEN 302 (450)
T ss_dssp ------------------------------TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC--------
T ss_pred ------------------------------CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccc
Confidence 7999999999999999999988777652
Q ss_pred --cCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEe--eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHh
Q 040062 335 --FFTQSVVDLSWSPDGYSLFACS-LDGTVANFHF--EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEA 409 (689)
Q Consensus 335 --~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~--~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las 409 (689)
.+...|.+++|+|++++|++++ .|+.|++|++ ..+.....+ ..+..+ +.|.+++|+|++.+++.
T Consensus 303 ~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~----------~~~~~~-~~v~~~~~~~~~~~v~~ 371 (450)
T 2vdu_B 303 NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALK----------QIITFP-YNVISLSAHNDEFQVTL 371 (450)
T ss_dssp --CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEE----------EEEECS-SCEEEEEEETTEEEEEE
T ss_pred cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeec----------cEeccC-CceEEEEecCCcEEEEE
Confidence 1235699999999999999998 8999999999 443111111 112223 57999999997766665
Q ss_pred hcc
Q 040062 410 ASA 412 (689)
Q Consensus 410 ~s~ 412 (689)
++.
T Consensus 372 ~~~ 374 (450)
T 2vdu_B 372 DNK 374 (450)
T ss_dssp CCT
T ss_pred ecc
Confidence 554
No 105
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=9e-30 Score=275.10 Aligned_cols=258 Identities=18% Similarity=0.303 Sum_probs=212.2
Q ss_pred ceeeecCceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCC-CEEEEE
Q 040062 7 SWVRHEGMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHG-RYIASG 84 (689)
Q Consensus 7 ~~~~H~g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg-~~Lasg 84 (689)
.+.+|. ..|++++|+| ++++|++|+.||.|+|||+....... ...+.+..+.+|...|.+++|+|++ .+|+++
T Consensus 76 ~~~~h~-~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 76 LVCGHT-APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----PLREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp CBCCCS-SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----CBCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred eEecCC-CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----ccCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 355788 5999999999 99999999999999999998621100 0115677888999999999999998 699999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE--ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL--RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
+.|+.|++||+.++ +....+ ..|...|.+++|+|++++|++++.|+.|++||+++++.+..
T Consensus 151 ~~dg~i~iwd~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~ 213 (402)
T 2aq5_A 151 GCDNVILVWDVGTG-----------------AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAE 213 (402)
T ss_dssp ETTSCEEEEETTTT-----------------EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE
T ss_pred cCCCEEEEEECCCC-----------------CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeee
Confidence 99999999999987 677788 78999999999999999999999999999999999999999
Q ss_pred E-ecCCCC-eEEEEEccCCCEEEEE---eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 163 L-RGHSSL-VKGVAWDPIGSFIASQ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 163 l-~~h~~~-V~~l~~spdg~~las~---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
+ ..|.+. +.++.|+|++++|+++ +.|+.|++||++++......
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~-------------------------------- 261 (402)
T 2aq5_A 214 KDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSL-------------------------------- 261 (402)
T ss_dssp EECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEE--------------------------------
T ss_pred eccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceE--------------------------------
Confidence 8 788876 8999999999999999 78999999999765431110
Q ss_pred CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE-EEeCCC
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQDR 316 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~Dg 316 (689)
....|...+..+.|+|++ .+|+ +|+.|+
T Consensus 262 ------------------~~~~~~~~v~~~~~s~~~---------------------------------~~l~~~g~~dg 290 (402)
T 2aq5_A 262 ------------------QELDTSSGVLLPFFDPDT---------------------------------NIVYLCGKGDS 290 (402)
T ss_dssp ------------------EECCCCSSCEEEEEETTT---------------------------------TEEEEEETTCS
T ss_pred ------------------EeccCCCceeEEEEcCCC---------------------------------CEEEEEEcCCC
Confidence 011245668888998886 5665 566799
Q ss_pred cEEEEeCCCCCc-eEEecc-cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 317 TITVWTTASPRP-LFVAKH-FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 317 ~I~iwd~~~~~~-~~~~~~-~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
.|++||+.++++ +..+.. .|...|.+++|+|++.++++ .|+.+++|++.++++
T Consensus 291 ~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 291 SIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp CEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred eEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 999999999885 333332 25688999999999998864 567999999987653
No 106
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=1.2e-29 Score=277.06 Aligned_cols=272 Identities=21% Similarity=0.336 Sum_probs=218.6
Q ss_pred CceeeecCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEE
Q 040062 6 PSWVRHEGMQIFSIDVQPG-ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIAS 83 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~spd-g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Las 83 (689)
.....|. ..|++++|+|+ +.+||+++.||.|+|||+........ .......+..+.+|...|++++|+|++. +|++
T Consensus 122 ~~~~~h~-~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s 199 (430)
T 2xyi_A 122 EIKINHE-GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS 199 (430)
T ss_dssp EEEEEES-SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred EEEEcCC-CcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence 3456788 59999999997 68999999999999999975211110 0112466778889999999999999988 9999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCC---eE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTG---IC 159 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~---~~ 159 (689)
|+.||.|++|++..+.... ........+.+|...|.+++|+| ++.+|++++.|+.|++||++++ ..
T Consensus 200 ~~~dg~i~vwd~~~~~~~~----------~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~ 269 (430)
T 2xyi_A 200 ASDDHTICLWDINATPKEH----------RVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP 269 (430)
T ss_dssp ECTTSCEEEEETTSCCBGG----------GEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSC
T ss_pred EeCCCeEEEEeCCCCCCCC----------ceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcc
Confidence 9999999999998753210 01122456778999999999999 6779999999999999999987 57
Q ss_pred EEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 160 TAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 160 ~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
+..+..|...|.+++|+|++. +|++++.||.|++||+++....
T Consensus 270 ~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~------------------------------------ 313 (430)
T 2xyi_A 270 SHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLK------------------------------------ 313 (430)
T ss_dssp SEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC------------------------------------
T ss_pred eeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCC------------------------------------
Confidence 778888999999999999987 7889999999999999763210
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcE
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTI 318 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I 318 (689)
...+..|...|.+++|+|++ ..+|++++.|+.|
T Consensus 314 ---------------~~~~~~h~~~v~~i~~sp~~--------------------------------~~~l~s~~~d~~i 346 (430)
T 2xyi_A 314 ---------------LHSFESHKDEIFQVQWSPHN--------------------------------ETILASSGTDRRL 346 (430)
T ss_dssp ---------------SEEEECCSSCEEEEEECSSC--------------------------------TTEEEEEETTSCC
T ss_pred ---------------eEEeecCCCCEEEEEECCCC--------------------------------CCEEEEEeCCCcE
Confidence 01234578899999999985 2579999999999
Q ss_pred EEEeCCCCC-------------ceEEecccCCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeeccccc
Q 040062 319 TVWTTASPR-------------PLFVAKHFFTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 319 ~iwd~~~~~-------------~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
+|||+.... .+......|...|++++|+|+++ +|++++.||.|+||++....+.
T Consensus 347 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~~~~ 414 (430)
T 2xyi_A 347 HVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAENVYN 414 (430)
T ss_dssp EEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHHHHC
T ss_pred EEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccccccc
Confidence 999998722 23333446788999999999999 8999999999999999875443
No 107
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=6e-29 Score=271.74 Aligned_cols=284 Identities=19% Similarity=0.322 Sum_probs=236.5
Q ss_pred eeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCE
Q 040062 60 ATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSI 139 (689)
Q Consensus 60 ~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~ 139 (689)
....+|...|.|+.| ++++|++|+.||.|++||+.++ +....+.+|...|.+++| ++++
T Consensus 127 ~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-----------------~~~~~~~~h~~~v~~l~~--~~~~ 185 (435)
T 1p22_A 127 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTL-----------------ECKRILTGHTGSVLCLQY--DERV 185 (435)
T ss_dssp ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSC-----------------CEEEEECCCSSCEEEEEC--CSSE
T ss_pred ecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCC-----------------eEEEEEcCCCCcEEEEEE--CCCE
Confidence 334467778999888 7899999999999999999887 677888999999999999 7889
Q ss_pred EEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce---eeccCcccccCCcc
Q 040062 140 LASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA---HRTDGHWAKSLGST 216 (689)
Q Consensus 140 Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~ 216 (689)
|++|+.||.|++||+.+++.+..+.+|...|.+++|+ +.+|++++.|+.|++||++++... ..+..+. .
T Consensus 186 l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~------~ 257 (435)
T 1p22_A 186 IITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHR------A 257 (435)
T ss_dssp EEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCS------S
T ss_pred EEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCC------C
Confidence 9999999999999999999999999999999999997 569999999999999999887665 3333333 3
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
.+.++.| +++++++++. ...+.+|+.........+.+|...+.++.|+.
T Consensus 258 ~v~~~~~--~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------------------------- 306 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASG----DRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD------------------------- 306 (435)
T ss_dssp CEEEEEE--ETTEEEEEET----TSEEEEEETTTCCEEEEEECCSSCEEEEEEET-------------------------
T ss_pred cEEEEEe--CCCEEEEEeC----CCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC-------------------------
Confidence 3788888 7889998876 45678999988888888999999999999842
Q ss_pred cccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccC
Q 040062 297 KIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLS 376 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~ 376 (689)
+++++|+.||.|++||+++++.+..+. .|...|.+++| ++.+|++|+.||.|++||+..++......
T Consensus 307 ----------~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~ 373 (435)
T 1p22_A 307 ----------RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPA 373 (435)
T ss_dssp ----------TEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCT
T ss_pred ----------CEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccc
Confidence 589999999999999999999888876 47889999999 78999999999999999998765211100
Q ss_pred hHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 377 DAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 377 ~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
. ......+..|.+.|.+++| ++.+|++++.||+| +++...
T Consensus 374 ~----~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i--~iwd~~ 413 (435)
T 1p22_A 374 G----TLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTI--LIWDFL 413 (435)
T ss_dssp T----TTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEE--EEEC--
T ss_pred c----chheeeccCCCCCeEEEEe--CCCEEEEEeCCCEE--EEEECC
Confidence 0 0011344568888999999 78899999999999 777644
No 108
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.2e-28 Score=254.03 Aligned_cols=277 Identities=17% Similarity=0.237 Sum_probs=224.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE--ecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL--RGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 69 V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
+++|+||+++ +||+| .|++|+|||+.++ +....+ .+|...|.+++|+|++++|++|+.|
T Consensus 28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg-----------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~D 88 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSS 88 (318)
T ss_dssp CBCEEECTTS-EEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETT
T ss_pred ceEEEECCCC-EEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECC
Confidence 5789999886 67765 5899999999987 444444 5678889999999999999999999
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-eeeccCcccccCCcccEEEEEEcC
Q 040062 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-AHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
+.|++||+++++++..+.+|...+.++. +++.+|++++.++.+++|+...... +..+..+.. .+..+.|++
T Consensus 89 g~v~iw~~~~~~~~~~~~~h~~~~~~~~--~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 160 (318)
T 4ggc_A 89 AEVQLWDVQQQKRLRNMTSHSARVGSLS--WNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ------EVCGLRWAP 160 (318)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEE--EETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS------CEEEEEECT
T ss_pred CcEEEeecCCceeEEEecCccceEEEee--cCCCEEEEEecCCceEeeecCCCceeEEEEcCccC------ceEEEEEcC
Confidence 9999999999999999999999887655 4578999999999999999876543 334444433 388999999
Q ss_pred CCCeEEEecCCCCCccccceeecCCce----eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 226 CGHFITTTHGFQKPRHSAPVLERGEWA----ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 226 dg~~l~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
++++++++..+ ..+.+|+..... .......|.+.|..+.+++....
T Consensus 161 ~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------------------------- 210 (318)
T 4ggc_A 161 DGRHLASGGND----NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN-------------------------- 210 (318)
T ss_dssp TSSEEEEEETT----SCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTT--------------------------
T ss_pred CCCEEEEEecC----cceeEEECCCCcccccceeeecccCCceEEEEecCCCCc--------------------------
Confidence 99999998764 456688765433 33455678889999999987511
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe--CCCcEEEEEeeccccccccChHH
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS--LDGTVANFHFEVKELGHRLSDAE 379 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs--~DG~I~vwd~~~~~l~~~l~~~~ 379 (689)
.-.+++++.++.|++||........... +...+..+.|++++..+++++ .|+.|++||+.+++....
T Consensus 211 ----~~~~~~~~~~~~i~lwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~----- 279 (318)
T 4ggc_A 211 ----VLATGGGTSDRHIRIWNVCSGACLSAVD--AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAE----- 279 (318)
T ss_dssp ----EEEEEECTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEE-----
T ss_pred ----EEEEEecCCCCEEEEEeccccccccccc--ceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEE-----
Confidence 1244567788999999999887766544 467899999999999888765 799999999998877643
Q ss_pred HHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 380 LDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 380 ~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
+.+|.+.|++++|+|||.+|++++.||+| +++.+
T Consensus 280 --------l~gH~~~V~~l~~spdg~~l~S~s~D~~v--~iWd~ 313 (318)
T 4ggc_A 280 --------LKGHTSRVLSLTMSPDGATVASAAADETL--RLWRC 313 (318)
T ss_dssp --------ECCCSSCEEEEEECTTSSCEEEEETTTEE--EEECC
T ss_pred --------EcCCCCCEEEEEEcCCCCEEEEEecCCeE--EEEEC
Confidence 34588899999999999999999999999 77753
No 109
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.8e-30 Score=275.61 Aligned_cols=318 Identities=14% Similarity=0.032 Sum_probs=203.2
Q ss_pred eEEEEEEc---CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEE------------------
Q 040062 15 QIFSIDVQ---PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVR------------------ 73 (689)
Q Consensus 15 ~I~si~~s---pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~------------------ 73 (689)
..+++.|. +++..|++++.|+.|++|+.......... ......+..+ .|...+.++.
T Consensus 17 ~p~~~~w~~~~~~~~~l~a~g~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 17 RPYTTTWCSQSPSCSNLLAIGHDTGITIYCASEEQTPGST-GLTLQELFTI-QTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CEEEEEECTTSGGGTTEEEEEESSEEEEEEEEECCSSSCC-SEEEEEEEEE-ECSSCEEEEEECTTCEEECC--------
T ss_pred CCeEEEEeCCCCCCCCEEEEECCCCEEEEECCCCCccccc-ccceeeeEEE-ecCCCeeeEeecCCccccccccCCCcce
Confidence 45677774 44444555556788999987542211100 0011112222 1333344444
Q ss_pred --EcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC--------CCCEEEEE
Q 040062 74 --WAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP--------DDSILASG 143 (689)
Q Consensus 74 --fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp--------dg~~Lasg 143 (689)
+++++.+|++++.|++|+|||++.+.. ........+.+|...|.+++|+| |+++||++
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~------------~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~ 162 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETI------------ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASV 162 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEE------------EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCcc------------ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEE
Confidence 444567899999999999999987621 11123345678999999999998 78999999
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
+.|++|+|||+.++.++..+..|...|.+++|+|++ .+|++++.|++|++||+++++............ ...+....
T Consensus 163 s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~--~~~~~s~~ 240 (393)
T 4gq1_A 163 GDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK--NPWLLTLN 240 (393)
T ss_dssp ETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CS--CCCSEEEE
T ss_pred ECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcc--cceEEecc
Confidence 999999999999998888888899999999999987 589999999999999999877655443322110 00011111
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
+ ..........+|...+.++.|.+.
T Consensus 241 ~-------------------------~~~~~~~~~~~~~~~v~~v~~~~~------------------------------ 265 (393)
T 4gq1_A 241 T-------------------------LPLVNTCHSSGIASSLANVRWIGS------------------------------ 265 (393)
T ss_dssp S-------------------------GGGC------CCSSSCSEEEEETT------------------------------
T ss_pred c-------------------------ccceeeeecccccccceeeeeecC------------------------------
Confidence 1 111111234568888888888632
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeE------------------EEEEcc--CCCeEEEEeCCCcEE
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVV------------------DLSWSP--DGYSLFACSLDGTVA 362 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~------------------~l~~sp--dg~~L~sgs~DG~I~ 362 (689)
++..|++++.|+.+++||+..++....+.. |...+. ...|+| ++.++++|+.||.|+
T Consensus 266 --dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~ 342 (393)
T 4gq1_A 266 --DGSGILAMCKSGAWLRWNLFANNDYNEISD-STMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQ 342 (393)
T ss_dssp --TTCEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEE
T ss_pred --CCCEEEEEeCCCCEEEEECccCCCCceEee-ecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEE
Confidence 348999999999999999987765444322 222222 233433 445677889999999
Q ss_pred EEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeee
Q 040062 363 NFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKK 419 (689)
Q Consensus 363 vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~ 419 (689)
+||+.+++.... ...|...|.+++|||||++||+++.||.+--+
T Consensus 343 lwd~~~~~~~~~-------------~~~~~~~V~svafspdG~~LA~as~~Gv~lvr 386 (393)
T 4gq1_A 343 LINTYEKDSNSI-------------PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTR 386 (393)
T ss_dssp EEETTCTTCCEE-------------EEECSSCEEEEEECTTSSEEEEEESSEEEEEE
T ss_pred EEECCCCcEEEE-------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Confidence 999988766532 22355689999999999999999999986333
No 110
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=6.4e-30 Score=275.81 Aligned_cols=256 Identities=18% Similarity=0.149 Sum_probs=183.6
Q ss_pred cCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC--------CCCEEEEEeCCCeEEEE
Q 040062 22 QPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK--------HGRYIASGSDDQVILIH 93 (689)
Q Consensus 22 spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp--------dg~~Lasgs~Dg~I~iw 93 (689)
++++.+||+|+.|++|+|||..... ......+..+.+|.+.|++|+|+| |+++||+|+.|++|+||
T Consensus 98 ~~~~~~las~~~d~~v~lw~~~~~~------~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~W 171 (393)
T 4gq1_A 98 PVYSLFLACVCQDNTVRLIITKNET------IITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIW 171 (393)
T ss_dssp CEEEEEEEEEETTSCEEEEEEETTE------EEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCc------cceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEE
Confidence 3456689999999999999987610 111234566889999999999998 78999999999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEE----------
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAV---------- 162 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~---------- 162 (689)
|+.++ .....+..|...|.+++|+|++. +|++++.|++|++||+++++....
T Consensus 172 d~~~~-----------------~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~ 234 (393)
T 4gq1_A 172 RLTDE-----------------GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNP 234 (393)
T ss_dssp EEETT-----------------EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCC
T ss_pred ECCCC-----------------ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccc
Confidence 99876 56777788999999999999875 899999999999999988765432
Q ss_pred ---------------EecCCCCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 163 ---------------LRGHSSLVKGVAWD-PIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 163 ---------------l~~h~~~V~~l~~s-pdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
..+|...|.++.|+ ++++.|++++.|+++++||+..+.....+..+... +..+.+.++
T Consensus 235 ~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~------~~~~~~~~~ 308 (393)
T 4gq1_A 235 WLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMK------LGPKNLLPN 308 (393)
T ss_dssp CSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------------CCSCS
T ss_pred eEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCc------cccEEEccc
Confidence 24577889999987 79999999999999999999877665555433221 333334443
Q ss_pred CCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
.+.+.. +. ......|++.. ++
T Consensus 309 ~~~~~~---------------------------~~-~~~~~~~~~~~-------------------------------~~ 329 (393)
T 4gq1_A 309 VQGISL---------------------------FP-SLLGACPHPRY-------------------------------MD 329 (393)
T ss_dssp EEEECS---------------------------SC-CSSCCEECSSC-------------------------------TT
T ss_pred cccccc---------------------------cC-cceeEEEccCC-------------------------------CC
Confidence 322211 11 11122333322 34
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEee
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~ 367 (689)
.++++|+.||.|+|||+.+++.+.... .|...|.+++|+|||++|++++.|| +.+|++.
T Consensus 330 ~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 330 YFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp EEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred EEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 678888999999999999998887765 4678999999999999999999665 6667653
No 111
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.97 E-value=5.3e-29 Score=271.92 Aligned_cols=318 Identities=19% Similarity=0.338 Sum_probs=234.3
Q ss_pred ceEEEEEEcCCC----------CEEEEEeC----CCeEEEEeCCcCCC-------CCCCC--------cccce-eeeeec
Q 040062 14 MQIFSIDVQPGA----------LRFATGGG----DHKVRIWNMKSVGK-------NFEND--------ESTQR-LLATLR 63 (689)
Q Consensus 14 ~~I~si~~spdg----------~~Latgs~----Dg~V~IWd~~~~~~-------~~~~~--------~~~~~-~~~~l~ 63 (689)
-+..|+.|.|+. .+|++|+. ...|.|+++.-... .+..+ ...++ ......
T Consensus 46 wp~l~~~~~p~~~~~~~~~~~~~~~~~GT~t~~~~n~i~i~~~~lp~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 125 (430)
T 2xyi_A 46 WPSLTAQWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKI 125 (430)
T ss_dssp SCCSCEEECSCCEECTTCSCEEEEEEEECCCSSSCEEEEEEEEEEC--------------------------CEEEEEEE
T ss_pred CCceEEEECcccccccCCCcceEEEEEEEcCCCCCCEEEEEEEECCCCccccccccccccccccccccCCCCceEEEEEE
Confidence 478999999976 46888865 45788887641000 00000 11112 234556
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEE
Q 040062 64 DHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILA 141 (689)
Q Consensus 64 ~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~La 141 (689)
.|.+.|++++|+|+ +.+|++++.||.|++|++........ ..........+.+|...|.+|+|+|++. +|+
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~ 198 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE-------PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLL 198 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC-------TTCCCCCSEEEECCSSCCCCEEECTTSTTEEE
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC-------ccccCCCcEEecCCCCCeEEEEeCCCCCCeEE
Confidence 79999999999997 78999999999999999976311100 0011245677889999999999999988 999
Q ss_pred EEeCCCeEEEEEcCCCeE-------EEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC
Q 040062 142 SGSLDNTIHIWNMSTGIC-------TAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL 213 (689)
Q Consensus 142 sgs~Dg~I~vwd~~~~~~-------~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~ 213 (689)
+++.||.|++||+.++.. ...+.+|...|.+++|+| ++.+|++++.|+.|++||+++.....
T Consensus 199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~---------- 268 (430)
T 2xyi_A 199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK---------- 268 (430)
T ss_dssp EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS----------
T ss_pred EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc----------
Confidence 999999999999987322 456778999999999999 67899999999999999998643110
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccC
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTN 293 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~ 293 (689)
....+..|...|.+++|+|++
T Consensus 269 ---------------------------------------~~~~~~~~~~~v~~i~~~p~~-------------------- 289 (430)
T 2xyi_A 269 ---------------------------------------PSHTVDAHTAEVNCLSFNPYS-------------------- 289 (430)
T ss_dssp ---------------------------------------CSEEEECCSSCEEEEEECSSC--------------------
T ss_pred ---------------------------------------ceeEeecCCCCeEEEEeCCCC--------------------
Confidence 001234578899999999985
Q ss_pred CcccccCccCCCCcEEEEEeCCCcEEEEeCCCC-CceEEecccCCCCeEEEEEccCCC-eEEEEeCCCcEEEEEeecccc
Q 040062 294 GTSKIGGKESQPYNVIAIGSQDRTITVWTTASP-RPLFVAKHFFTQSVVDLSWSPDGY-SLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 294 ~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs~DG~I~vwd~~~~~l 371 (689)
..+|++|+.||.|++||+++. .++..+. .|...|.+++|+|+++ +|++++.||.|+|||+.....
T Consensus 290 ------------~~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~ 356 (430)
T 2xyi_A 290 ------------EFILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE 356 (430)
T ss_dssp ------------TTEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred ------------CCEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence 247999999999999999984 4555554 5789999999999995 688999999999999987332
Q ss_pred ccccChHHHH---HHHHhccCCccCceeeeecCchhh-hhHhhccccceeeeeeecc
Q 040062 372 GHRLSDAELD---ELKRSRYGDVRGRLANLAETPAQL-LLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 372 ~~~l~~~~~~---~~~~~~~g~~~~~I~~l~~Spdg~-~Las~s~DG~v~~~~~~~~ 424 (689)
... ..... ..+...+..|...|.+++|+|++. +|++++.||.| +++...
T Consensus 357 ~~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i--~iw~~~ 409 (430)
T 2xyi_A 357 EQS--TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIM--QVWQMA 409 (430)
T ss_dssp CCC--HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEE--EEEEEC
T ss_pred ccC--ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCE--EEeEcc
Confidence 111 00000 011134556788899999999999 89999999999 666543
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3.4e-28 Score=258.50 Aligned_cols=293 Identities=14% Similarity=0.102 Sum_probs=212.5
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+.+..+..|.+.|++++|+|||++|++|+.|+ ++||++.+. ....... ...+..++|.+
T Consensus 9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~-----------------~~~~~~~--~~~~~~~~~~~ 68 (355)
T 3vu4_A 9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV-----------------AHIMSQE--MRHLSKVRMLH 68 (355)
T ss_dssp ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE-----------------EEEEEEE--CSCCCEEEECT
T ss_pred cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc-----------------ceeeeee--cCCeEEEEEcC
Confidence 556667788999999999999999999998776 789998765 3333322 23578888998
Q ss_pred CCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-cceeeccCcccccC
Q 040062 136 DDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW-SLAHRTDGHWAKSL 213 (689)
Q Consensus 136 dg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~~~~~ 213 (689)
+++++ ++++.|+.|++||+.+++.+..+. |...|.+++|+++. ++++. |+.|++||+.+. +.+..+..
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~------ 138 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR------ 138 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE------
T ss_pred CCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc------
Confidence 88877 567788999999999999999888 77799999998764 44443 779999999987 66655543
Q ss_pred CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce----------------eeeeecCCCCCEEEEEEcCCccccc
Q 040062 214 GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA----------------ATFDFLGHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 214 ~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~----------------~~~~l~~h~~~v~~v~fsp~~~~~~ 277 (689)
....+++++ .+++++.+. ....+.+|+..... ....+.+|.+.|.+++|+|++
T Consensus 139 ---~~~~~~~s~--~~la~~sg~--~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g---- 207 (355)
T 3vu4_A 139 ---FGGVCEFSN--GLLVYSNEF--NLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKS---- 207 (355)
T ss_dssp ---EEEEEEEET--TEEEEEESS--CTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTS----
T ss_pred ---CCceEEEEc--cEEEEeCCC--cCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCC----
Confidence 134456666 666665221 23567788776543 156788999999999999987
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCc-EEEEeCCCCCceEEeccc-CCCCeEEEEEccCCCeEEEE
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT-ITVWTTASPRPLFVAKHF-FTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~-I~iwd~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sg 355 (689)
.+|++|+.|++ |+|||+++++.+..+... |...|.+++|+|||++|+++
T Consensus 208 -----------------------------~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~ 258 (355)
T 3vu4_A 208 -----------------------------DMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVV 258 (355)
T ss_dssp -----------------------------SEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEE
T ss_pred -----------------------------CEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEE
Confidence 89999999998 999999999999988744 89999999999999999999
Q ss_pred eCCCcEEEEEeeccccccccChHHHHHHHHh------------ccCCccCceeeeecCchhhhhHhhccccceeeee
Q 040062 356 SLDGTVANFHFEVKELGHRLSDAELDELKRS------------RYGDVRGRLANLAETPAQLLLEAASAKETTTKKV 420 (689)
Q Consensus 356 s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~------------~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~ 420 (689)
+.|++|++||++............. +... ...........++|++|+.+|++++.||.+.+..
T Consensus 259 s~d~~v~iw~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~ 333 (355)
T 3vu4_A 259 SDKWTLHVFEIFNDQDNKRHALKGW--INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFK 333 (355)
T ss_dssp ETTCEEEEEESSCCSCCCSEETTTT--EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEE
T ss_pred ECCCEEEEEEccCCCCcccccccce--eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEE
Confidence 9999999999976542211000000 0000 0001112347799999999999999999994443
No 113
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.97 E-value=7.9e-28 Score=261.89 Aligned_cols=279 Identities=11% Similarity=0.038 Sum_probs=229.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeee-----eecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA-----TLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~-----~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
..+.+++|+|++.++++++.|+.|++||+.+ ++... .+.+|.+.|.+++|+++++++++++.|+
T Consensus 123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~-----------g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~ 191 (433)
T 3bws_A 123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINS-----------GQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN 191 (433)
T ss_dssp SCBCCCEESSSSEEEEEBTTSSSEEEEETTT-----------CCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred CCceEEEEeCCCeEEEEeCCCCeEEEEECCC-----------CeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence 3577999999888888888899999999986 44444 4568999999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
.|++||++++ +....+..|...+.+++|+|++++++++ +.|+.|++||+.+++.+..+.. .
T Consensus 192 ~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~ 253 (433)
T 3bws_A 192 AVHVFDLKTL-----------------AYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK-I 253 (433)
T ss_dssp EEEEEETTTC-----------------CEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC-C
T ss_pred EEEEEECCCc-----------------eEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC-C
Confidence 9999999876 5677777899999999999999988554 4799999999999998888775 4
Q ss_pred CCeEEEEEccCCCEEEEEe--------CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 168 SLVKGVAWDPIGSFIASQS--------DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s--------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
..+.+++|+|++++|++++ .|+.|++||+++++....+... ..+..++|+|+++.++++...
T Consensus 254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~--- 323 (433)
T 3bws_A 254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP-------GNKRHIVSGNTENKIYVSDMC--- 323 (433)
T ss_dssp SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE-------ECEEEEEECSSTTEEEEEETT---
T ss_pred CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC-------CCcceEEECCCCCEEEEEecC---
Confidence 5689999999999999888 5889999999988776655321 137889999999877666432
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-----
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----- 314 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----- 314 (689)
...+.+|+.........+. +...+..++|+|++ +++++++.
T Consensus 324 ~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg---------------------------------~~l~~~~~~~~~~ 369 (433)
T 3bws_A 324 CSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDG---------------------------------KYLYVSCRGPNHP 369 (433)
T ss_dssp TTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTS---------------------------------SEEEEEECCCCCT
T ss_pred CCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCC---------------------------------CEEEEEecCCCcc
Confidence 3467788887666555543 67889999999987 44544444
Q ss_pred ----------CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC-CCcEEEEEee
Q 040062 315 ----------DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL-DGTVANFHFE 367 (689)
Q Consensus 315 ----------Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-DG~I~vwd~~ 367 (689)
||.|++||+.+++.+..+.. ...+.+++|+|||++|++++. |+.|++|+++
T Consensus 370 ~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 370 TEGYLKKGLVLGKVYVIDTTTDTVKEFWEA--GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp TTCTTSCCSSCCEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred ccccccccccceEEEEEECCCCcEEEEecC--CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 68999999999988877664 557999999999999998875 9999999985
No 114
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=287.31 Aligned_cols=271 Identities=19% Similarity=0.247 Sum_probs=211.5
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC--
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-- 136 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-- 136 (689)
...+.+|.+.|++++|+|++++|++|+.||.|+|||+..+ .+.....+.+|...|.+++|+++
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------------~~~~~~~l~~h~~~V~~l~~s~~~~ 66 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------------THKLIDTLTGHEGPVWRVDWAHPKF 66 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETT---------------EEEEEEEECCCSSCEEEEEECCTTS
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCC---------------CCccceeccCCcCceEEEEecCCCC
Confidence 3467899999999999999999999999999999999743 12677888999999999999988
Q ss_pred CCEEEEEeCCCeEEEEEcCCCe--EEEEEecCCCCeEEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCccccc
Q 040062 137 DSILASGSLDNTIHIWNMSTGI--CTAVLRGHSSLVKGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS 212 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~--~~~~l~~h~~~V~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~ 212 (689)
+++|++++.||.|++||+.+++ .+..+..|...|.+++|+|+ +++|++++.||.|++||+++......
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~-------- 138 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP-------- 138 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC--------
T ss_pred CCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce--------
Confidence 8999999999999999999987 77888899999999999999 99999999999999999976532111
Q ss_pred CCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccccc
Q 040062 213 LGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWT 292 (689)
Q Consensus 213 ~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~ 292 (689)
..+.+|...|.++.|+|.......
T Consensus 139 ------------------------------------------~~~~~~~~~v~~l~~~p~~~~~~~-------------- 162 (753)
T 3jro_A 139 ------------------------------------------IIIDAHAIGVNSASWAPATIEEDG-------------- 162 (753)
T ss_dssp ------------------------------------------EEEECCSSCEEEEEECCCC-------------------
T ss_pred ------------------------------------------eEeecCCCceEEEEecCccccccc--------------
Confidence 112357778888888875210000
Q ss_pred CCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceE---EecccCCCCeEEEEEccC---CCeEEEEeCCCcEEEEEe
Q 040062 293 NGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLF---VAKHFFTQSVVDLSWSPD---GYSLFACSLDGTVANFHF 366 (689)
Q Consensus 293 ~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~spd---g~~L~sgs~DG~I~vwd~ 366 (689)
.....+++.++++|+.||.|++||++++.... .....|...|++++|+|+ +.+|++++.||.|++||+
T Consensus 163 ------~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~ 236 (753)
T 3jro_A 163 ------EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQ 236 (753)
T ss_dssp ----------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEE
T ss_pred ------ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecC
Confidence 00001235799999999999999998875322 223468899999999999 899999999999999999
Q ss_pred eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeeecc
Q 040062 367 EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVSDV 424 (689)
Q Consensus 367 ~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~~~ 424 (689)
.+++....... .....|.+.|.+++|+|+|.+|++++.||.| +++...
T Consensus 237 ~~~~~~~~~~~--------~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I--~vwd~~ 284 (753)
T 3jro_A 237 DNEQGPWKKTL--------LKEEKFPDVLWRASWSLSGNVLALSGGDNKV--TLWKEN 284 (753)
T ss_dssp SSSSSCCBCCB--------SSSSCCSSCCCCEEECTTTCCEEEECSSSCE--ECCBCC
T ss_pred CCCCCcceeEE--------eccCCCCCceEEEEEcCCCCEEEEEcCCCEE--EEEecC
Confidence 88642211110 2233467789999999999999999999999 666544
No 115
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=8.7e-27 Score=250.05 Aligned_cols=273 Identities=13% Similarity=0.123 Sum_probs=222.0
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCCcccc
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~Dg~I~iwdl~~~~~~~~~ 104 (689)
.++++++.|+.|++||+.+ ++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.++
T Consensus 3 ~l~vs~~~d~~v~v~d~~~-----------~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~------ 64 (391)
T 1l0q_A 3 FAYIANSESDNISVIDVTS-----------NKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATN------ 64 (391)
T ss_dssp EEEEEETTTTEEEEEETTT-----------TEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT------
T ss_pred EEEEEcCCCCEEEEEECCC-----------CeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCC------
Confidence 4678888999999999987 67788887665 48999999999977 67779999999999887
Q ss_pred CCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE-
Q 040062 105 GSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI- 182 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l- 182 (689)
+....+..+. .+.+++|+|++++|+++ +.++.|++||+.+++.+..+..| ..+.+++|+|++++|
T Consensus 65 -----------~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~ 131 (391)
T 1l0q_A 65 -----------NVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLY 131 (391)
T ss_dssp -----------EEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEE
T ss_pred -----------eEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECCCCCEEE
Confidence 5666666555 89999999999977655 46799999999999998888854 578999999999977
Q ss_pred EEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCC
Q 040062 183 ASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNA 262 (689)
Q Consensus 183 as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~ 262 (689)
++++.|+.|++||+.+++....+..+. .+..++|+|++++++++... ...+.+|+.........+. +..
T Consensus 132 ~~~~~~~~v~~~d~~~~~~~~~~~~~~-------~~~~~~~~~dg~~l~~~~~~---~~~v~~~d~~~~~~~~~~~-~~~ 200 (391)
T 1l0q_A 132 VTNNGDKTVSVINTVTKAVINTVSVGR-------SPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVK-VEA 200 (391)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCS-------SEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEE-CSS
T ss_pred EEeCCCCEEEEEECCCCcEEEEEecCC-------CcceEEECCCCCEEEEEeCC---CCEEEEEECCCCeEEEEEe-cCC
Confidence 678889999999999988877765432 26889999999998655432 2457788887766554443 566
Q ss_pred CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe---CCCcEEEEeCCCCCceEEecccCCCC
Q 040062 263 PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS---QDRTITVWTTASPRPLFVAKHFFTQS 339 (689)
Q Consensus 263 ~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs---~Dg~I~iwd~~~~~~~~~~~~~h~~~ 339 (689)
.+..++|+|++ ++|++++ .++.|++||+.+++.+..+.. ...
T Consensus 201 ~~~~~~~~~~g---------------------------------~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~ 245 (391)
T 1l0q_A 201 APSGIAVNPEG---------------------------------TKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPD 245 (391)
T ss_dssp EEEEEEECTTS---------------------------------SEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSS
T ss_pred CccceEECCCC---------------------------------CEEEEEecCcCCCcEEEEECCCCeEEEEEec--CCC
Confidence 78899999886 6777776 689999999999988777664 345
Q ss_pred eEEEEEccCCCeE-EEEeCCCcEEEEEeecccccccc
Q 040062 340 VVDLSWSPDGYSL-FACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 340 V~~l~~spdg~~L-~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
+.+++|+|+|++| ++++.|+.|++||++++++...+
T Consensus 246 ~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 246 PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEE
Confidence 8999999999988 56688999999999988776543
No 116
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.7e-27 Score=253.16 Aligned_cols=279 Identities=10% Similarity=0.081 Sum_probs=212.8
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEE-EEEeCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYI-ASGSDD 87 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~L-asgs~D 87 (689)
..|. ..|+|++|+|||++|++|+.++ ++|||+.. .+....... ..+..++|.++++++ ++++.|
T Consensus 16 ~~h~-~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~-----------~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d 80 (355)
T 3vu4_A 16 NHVS-NPVTDYEFNQDQSCLILSTLKS-FEIYNVHP-----------VAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVK 80 (355)
T ss_dssp ---C-CCCCEEEECTTSSEEEEECSSE-EEEEEETT-----------EEEEEEEEC--SCCCEEEECTTSSEEEEECSST
T ss_pred ccCC-CceEEEEECCCCCEEEEEcCCE-EEEEecCC-----------cceeeeeec--CCeEEEEEcCCCCEEEEEECCc
Confidence 4576 6999999999999999998765 78999875 444433332 247888999988887 567788
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-eEEEEEecC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-ICTAVLRGH 166 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-~~~~~l~~h 166 (689)
+.|+|||+.++ +.+..+. |...|.+++|+++. ++++ .|+.|++||+.++ +.+..+..
T Consensus 81 ~~v~iWd~~~~-----------------~~~~~~~-~~~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~- 138 (355)
T 3vu4_A 81 EVVHIWDDVKK-----------------QDVSRIK-VDAPVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR- 138 (355)
T ss_dssp TEEEEEETTTT-----------------EEEEEEE-CSSCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE-
T ss_pred cEEEEEECCCC-----------------cEEEEEE-CCCceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc-
Confidence 99999999887 5666665 66789999998764 4444 4889999999987 66555543
Q ss_pred CCCeEEEEEccCCCEEEE--EeCCCeEEEEECCCCc----------------ceeeccCcccccCCcccEEEEEEcCCCC
Q 040062 167 SSLVKGVAWDPIGSFIAS--QSDDKTVIIWRTSDWS----------------LAHRTDGHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las--~s~Dg~I~iwd~~~~~----------------~~~~~~~~~~~~~~~~~i~~l~~spdg~ 228 (689)
....+++++ .+++. ++.||.|++||++++. ....+..|.. .|.+++|+|+|+
T Consensus 139 --~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~------~v~~~~~s~~g~ 208 (355)
T 3vu4_A 139 --FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTN------PIKMVRLNRKSD 208 (355)
T ss_dssp --EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSS------CEEEEEECTTSS
T ss_pred --CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCC------ceEEEEECCCCC
Confidence 444566676 66666 5789999999998765 1444555543 399999999999
Q ss_pred eEEEecCCCCCccc-cceeecCCceeeeeec-C-CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 229 FITTTHGFQKPRHS-APVLERGEWAATFDFL-G-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 229 ~l~~~~~~~~~~~~-~~i~~~~~~~~~~~l~-~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
+|++++.+ .. +.+|+..+......+. + |...|.+++|+|++
T Consensus 209 ~l~s~s~d----~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~-------------------------------- 252 (355)
T 3vu4_A 209 MVATCSQD----GTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDG-------------------------------- 252 (355)
T ss_dssp EEEEEETT----CSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTS--------------------------------
T ss_pred EEEEEeCC----CCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCC--------------------------------
Confidence 99999764 45 7899998888888887 5 99999999999987
Q ss_pred CcEEEEEeCCCcEEEEeCCCCCce--EE--------------------ecccCCCCeEEEEEccCCCeEEEEeCCCcEEE
Q 040062 306 YNVIAIGSQDRTITVWTTASPRPL--FV--------------------AKHFFTQSVVDLSWSPDGYSLFACSLDGTVAN 363 (689)
Q Consensus 306 ~~~lasgs~Dg~I~iwd~~~~~~~--~~--------------------~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~v 363 (689)
++|++++.|+.|++||++..... .. +...+......++|++|+++|++++.||.+++
T Consensus 253 -~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~ 331 (355)
T 3vu4_A 253 -SKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIET 331 (355)
T ss_dssp -CEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEE
T ss_pred -CEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEE
Confidence 89999999999999999765321 11 11111223467999999999999999999999
Q ss_pred EEeecccc
Q 040062 364 FHFEVKEL 371 (689)
Q Consensus 364 wd~~~~~l 371 (689)
|++..++.
T Consensus 332 ~~~~~~~~ 339 (355)
T 3vu4_A 332 FKVVFDDE 339 (355)
T ss_dssp EEEEEETT
T ss_pred EEEEcCCC
Confidence 99987654
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.8e-27 Score=259.02 Aligned_cols=326 Identities=12% Similarity=0.094 Sum_probs=250.5
Q ss_pred ceEEEEE---EcCCCCEEEEEeC--------------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC
Q 040062 14 MQIFSID---VQPGALRFATGGG--------------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK 76 (689)
Q Consensus 14 ~~I~si~---~spdg~~Latgs~--------------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 76 (689)
..++.++ |+|++..+++.+. ++.+.||.+... ....+.+..+..+. .+.+++|+|
T Consensus 61 ~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~-------~~~~~~~~~~~~~~-~~~~~~~s~ 132 (433)
T 3bws_A 61 IALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKE-------GITHRFISRFKTGF-QPKSVRFID 132 (433)
T ss_dssp EEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBT-------TCSEEEEEEEECSS-CBCCCEESS
T ss_pred CccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCC-------CCcceEEEEEcCCC-CceEEEEeC
Confidence 5688899 9998877765432 222244444320 01125556665544 466999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEE-----EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-----TLRGHTADVVDLNWSPDDSILASGSLDNTIHI 151 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~v 151 (689)
++.++++++.|+.|++||+.++. ... .+.+|...|.+++|++++.++++++.|+.|++
T Consensus 133 ~~~~~~~~~~~~~i~~~d~~~g~-----------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~ 195 (433)
T 3bws_A 133 NTRLAIPLLEDEGMDVLDINSGQ-----------------TVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHV 195 (433)
T ss_dssp SSEEEEEBTTSSSEEEEETTTCC-----------------EEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEE
T ss_pred CCeEEEEeCCCCeEEEEECCCCe-----------------EeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEE
Confidence 88888888889999999998873 333 34578889999999999999999999999999
Q ss_pred EEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeE
Q 040062 152 WNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFI 230 (689)
Q Consensus 152 wd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l 230 (689)
||+.+++.+..+..|...+.+++|+|++++++++ +.|+.|++||+++++....+.... .+..++|+|+|+++
T Consensus 196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~~l 268 (433)
T 3bws_A 196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIG-------LPRGLLLSKDGKEL 268 (433)
T ss_dssp EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCS-------EEEEEEECTTSSEE
T ss_pred EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCC-------CceEEEEcCCCCEE
Confidence 9999999999999999999999999999988554 479999999999988877665432 27899999999999
Q ss_pred EEecCCCC----CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 231 TTTHGFQK----PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 231 ~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
+++..... ....+.+|+......... ..|...+..++|+|++ .
T Consensus 269 ~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~-~~~~~~~~~~~~~~~g--------------------------------~ 315 (433)
T 3bws_A 269 YIAQFSASNQESGGGRLGIYSMDKEKLIDT-IGPPGNKRHIVSGNTE--------------------------------N 315 (433)
T ss_dssp EEEEEESCTTCSCCEEEEEEETTTTEEEEE-EEEEECEEEEEECSST--------------------------------T
T ss_pred EEEECCCCccccCCCeEEEEECCCCcEEee-ccCCCCcceEEECCCC--------------------------------C
Confidence 88764332 234677888766544333 3456688889998885 1
Q ss_pred cEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeC---------------CCcEEEEEeecccc
Q 040062 307 NVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL---------------DGTVANFHFEVKEL 371 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~---------------DG~I~vwd~~~~~l 371 (689)
.++++++.|+.|++||+.+++.+..+. +...+.+++|+|+|++|++++. ||.|++||+.+++.
T Consensus 316 ~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~ 393 (433)
T 3bws_A 316 KIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTV 393 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEE
T ss_pred EEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcE
Confidence 356777899999999999888777665 4678999999999999998876 57999999988776
Q ss_pred ccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc-cccceeeeeee
Q 040062 372 GHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS-AKETTTKKVVS 422 (689)
Q Consensus 372 ~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s-~DG~v~~~~~~ 422 (689)
...+. +...+..++|+|||.+|++++ .|+.+ +++.
T Consensus 394 ~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~d~~i--~v~~ 429 (433)
T 3bws_A 394 KEFWE--------------AGNQPTGLDVSPDNRYLVISDFLDHQI--RVYR 429 (433)
T ss_dssp EEEEE--------------CSSSEEEEEECTTSCEEEEEETTTTEE--EEEE
T ss_pred EEEec--------------CCCCCceEEEcCCCCEEEEEECCCCeE--EEEE
Confidence 54331 123589999999999998776 49988 4443
No 118
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-28 Score=256.41 Aligned_cols=275 Identities=10% Similarity=0.016 Sum_probs=212.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 040062 20 DVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGS 99 (689)
Q Consensus 20 ~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~ 99 (689)
.+.+++.+|++|+.||.|+|||+.+ ++.+..+. ...|.++.|+|+ |++++.|+.|++|+.....
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~-----------~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~ 106 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKD-----------SKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQI 106 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESS-----------SSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCC-----------CcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCce
Confidence 3446788999999999999999987 55566655 467888899988 9999999999999876431
Q ss_pred CccccCCCCCCCcccceEEEEE-ecCCCCEEEEEEcC--CCCEEEEEeCCCeEEEEEcCCCeEEEEEec-CCCCeEEEEE
Q 040062 100 GTTEFGSGEPPDIENWKVAMTL-RGHTADVVDLNWSP--DDSILASGSLDNTIHIWNMSTGICTAVLRG-HSSLVKGVAW 175 (689)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~sp--dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~ 175 (689)
....+ ...+.+..+ ..|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.. |...|.+++|
T Consensus 107 ~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~ 178 (343)
T 3lrv_A 107 TILDS--------KTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVL 178 (343)
T ss_dssp EEEET--------TTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEE
T ss_pred EEeec--------CCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEE
Confidence 11111 011333333 36778999999999 999999999999999999999998777643 5568999999
Q ss_pred ccCCCEEEEEeCCCeEEEEECCCCcce-eeccC-cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 176 DPIGSFIASQSDDKTVIIWRTSDWSLA-HRTDG-HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 176 spdg~~las~s~Dg~I~iwd~~~~~~~-~~~~~-~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
+|++.+|++|+.||.|++||+++++.. ..+.. +. ..+.+++|+|++.+|++++. + .+.+|+......
T Consensus 179 ~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~------~~v~~l~fs~~g~~l~s~~~-~----~v~iwd~~~~~~ 247 (343)
T 3lrv_A 179 HKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEE------AKIKEVKFADNGYWMVVECD-Q----TVVCFDLRKDVG 247 (343)
T ss_dssp CTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTT------SCEEEEEECTTSSEEEEEES-S----BEEEEETTSSTT
T ss_pred CCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCC------CCEEEEEEeCCCCEEEEEeC-C----eEEEEEcCCCCc
Confidence 999999999999999999999998877 56655 43 34999999999999999873 2 688998776655
Q ss_pred eeeecC---CCCCEE--EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-CCcEEEEeCCCCC
Q 040062 254 TFDFLG---HNAPII--VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTASPR 327 (689)
Q Consensus 254 ~~~l~~---h~~~v~--~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~~~ 327 (689)
...+.. |...+. +++|+|++ ++|++++. |+.|+||++....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~g---------------------------------~~l~~~s~~d~~i~v~~~~~~~ 294 (343)
T 3lrv_A 248 TLAYPTYTIPEFKTGTVTYDIDDSG---------------------------------KNMIAYSNESNSLTIYKFDKKT 294 (343)
T ss_dssp CBSSCCCBC-----CCEEEEECTTS---------------------------------SEEEEEETTTTEEEEEEECTTT
T ss_pred ceeecccccccccccceEEEECCCC---------------------------------CEEEEecCCCCcEEEEEEcccc
Confidence 433332 333333 58898886 89999998 9999999997766
Q ss_pred ceEEecccCCCCeEEEEEcc---CCCeEEEEeCCCcEEEEEee
Q 040062 328 PLFVAKHFFTQSVVDLSWSP---DGYSLFACSLDGTVANFHFE 367 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l~~sp---dg~~L~sgs~DG~I~vwd~~ 367 (689)
..... ..+..++|++ +.+.|++++.||.+.++-..
T Consensus 295 ~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~ 332 (343)
T 3lrv_A 295 KNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKT 332 (343)
T ss_dssp CSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEEC
T ss_pred cceEe-----cCceeEecCccccccceeEEEecCCceEEEEec
Confidence 55443 4578889998 88999999999999988644
No 119
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.96 E-value=3.1e-27 Score=248.13 Aligned_cols=254 Identities=13% Similarity=0.082 Sum_probs=201.2
Q ss_pred eeeecCceEEEEEEcCCCC-EEEEEeCCCeEEEEeC-CcCCCCCCCCcccceeeeeecC--CCCcEEEEEEcCCCCEEEE
Q 040062 8 WVRHEGMQIFSIDVQPGAL-RFATGGGDHKVRIWNM-KSVGKNFENDESTQRLLATLRD--HFGSVNCVRWAKHGRYIAS 83 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~-~Latgs~Dg~V~IWd~-~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~fspdg~~Las 83 (689)
...|. ..|++++|+|+++ +|++|+.||.|++||+ .. .....+.. |...|.+++|+| +++|++
T Consensus 52 ~~~~~-~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~------------~~~~~~~~~~~~~~v~~l~~~~-~~~l~s 117 (342)
T 1yfq_A 52 SLRYK-HPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGS------------PSFQALTNNEANLGICRICKYG-DDKLIA 117 (342)
T ss_dssp EEECS-SCEEEEEEEESSSEEEEEEETTSCEEEECSSSS------------SSEEECBSCCCCSCEEEEEEET-TTEEEE
T ss_pred eeecC-CceEEEEECCCCCcEEEEEcCCCeEEEEEeccC------------CceEeccccCCCCceEEEEeCC-CCEEEE
Confidence 44677 6999999999999 9999999999999999 75 23467788 999999999999 999999
Q ss_pred EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-Ce--EE
Q 040062 84 GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GI--CT 160 (689)
Q Consensus 84 gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~--~~ 160 (689)
++.|+.|++||+.+....... ...+.+..+. |...|.+++|++++ |++++.|+.|++||+++ +. ..
T Consensus 118 ~~~d~~i~iwd~~~~~~~~~~--------~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~ 186 (342)
T 1yfq_A 118 ASWDGLIEVIDPRNYGDGVIA--------VKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGT 186 (342)
T ss_dssp EETTSEEEEECHHHHTTBCEE--------EEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCE
T ss_pred EcCCCeEEEEccccccccccc--------ccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccce
Confidence 999999999998761000000 0001122233 78899999999887 99999999999999988 44 34
Q ss_pred EEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCC------cceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 161 AVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDW------SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 161 ~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~------~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.....|...|.+++|+| ++++|++++.||.|++|+++.. +....+..+...
T Consensus 187 ~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~---------------------- 244 (342)
T 1yfq_A 187 IEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN---------------------- 244 (342)
T ss_dssp EEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCC----------------------
T ss_pred eeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccc----------------------
Confidence 45566889999999999 9999999999999999999765 332222221110
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
..-.+|...|.+++|+|++ ++|++++
T Consensus 245 ---------------------~~~~~~~~~i~~~~~s~~~---------------------------------~~l~~~~ 270 (342)
T 1yfq_A 245 ---------------------LKDTNLAYPVNSIEFSPRH---------------------------------KFLYTAG 270 (342)
T ss_dssp ---------------------TTCCSSCCCEEEEEECTTT---------------------------------CCEEEEE
T ss_pred ---------------------ccccccceeEEEEEEcCCC---------------------------------CEEEEec
Confidence 0012467799999999986 7899999
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCc-EEEE
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT-VANF 364 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~-I~vw 364 (689)
.||.|++||+.+++.+..+...|...|.+++ |++++|++++.||. .+.|
T Consensus 271 ~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 271 SDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp TTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCcccccc
Confidence 9999999999999988887654488999999 99999999999998 4433
No 120
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.95 E-value=6.6e-27 Score=256.76 Aligned_cols=268 Identities=12% Similarity=0.095 Sum_probs=203.3
Q ss_pred eecCceEEEEEEcCCCCEE-EEEeCCCeEEEEeCC--cCCCCCCCCcccceeeeeec--CCCCcEEEEEEcCCCCEEEEE
Q 040062 10 RHEGMQIFSIDVQPGALRF-ATGGGDHKVRIWNMK--SVGKNFENDESTQRLLATLR--DHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 10 ~H~g~~I~si~~spdg~~L-atgs~Dg~V~IWd~~--~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fspdg~~Lasg 84 (689)
.|. ..|++++|+|++++| ++|+.||.|+|||+. . ++.+..+. .|...|++++|+|++++|+++
T Consensus 100 ~~~-~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~-----------~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~ 167 (450)
T 2vdu_B 100 PIY-SYIRNLRLTSDESRLIACADSDKSLLVFDVDKTS-----------KNVLKLRKRFCFSKRPNAISIAEDDTTVIIA 167 (450)
T ss_dssp CCC-CCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSS-----------SSCEEEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred ccC-CceEEEEEcCCCCEEEEEECCCCeEEEEECcCCC-----------CceeeeeecccCCCCceEEEEcCCCCEEEEE
Confidence 455 489999999999996 899999999999998 4 45556664 577899999999999999999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCeEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD---DSILASGSLDNTIHIWNMSTGICTA 161 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd---g~~Lasgs~Dg~I~vwd~~~~~~~~ 161 (689)
+.||.|++|++.++.... .....+.+|...|.+++|+|+ +++|++++.|+.|++||+.+++.+.
T Consensus 168 ~~~g~v~~~~~~~~~~~~-------------~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 168 DKFGDVYSIDINSIPEEK-------------FTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ETTSEEEEEETTSCCCSS-------------CCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred eCCCcEEEEecCCccccc-------------ccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999999998763211 022245679999999999999 8999999999999999999998887
Q ss_pred E-EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC---CCCeEEEecCCC
Q 040062 162 V-LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP---CGHFITTTHGFQ 237 (689)
Q Consensus 162 ~-l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp---dg~~l~~~~~~~ 237 (689)
. +.+|...|.+++|+ ++++|++++.|++|++||+++++++..+..+... ..+.+.. ...+..
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~------ 300 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLI-------KPYLNDQHLAPPRFQN------ 300 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHH-------GGGCCTTSBC------------
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhh-------hhhhhhcccccccccc------
Confidence 7 55899999999999 9999999999999999999998877766532110 0000000 000000
Q ss_pred CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CCC
Q 040062 238 KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDR 316 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg 316 (689)
.....+...+..+.|+|++ ++|++++ .|+
T Consensus 301 -----------------~~~~~~~~~v~~i~~~~~~---------------------------------~~l~~~~~~d~ 330 (450)
T 2vdu_B 301 -----------------ENNDIIEFAVSKIIKSKNL---------------------------------PFVAFFVEATK 330 (450)
T ss_dssp ---------------------CBCCCEEEEEECSSS---------------------------------SEEEEEETTCS
T ss_pred -----------------cccccceEEEEEEEEeCCC---------------------------------CEEEEEECCCC
Confidence 0001234568889998876 7888888 899
Q ss_pred cEEEEeC--CCC---CceEEecccCCCCeEEEEEccCCCeEEEEeC------CCcEEEEEeec
Q 040062 317 TITVWTT--ASP---RPLFVAKHFFTQSVVDLSWSPDGYSLFACSL------DGTVANFHFEV 368 (689)
Q Consensus 317 ~I~iwd~--~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~------DG~I~vwd~~~ 368 (689)
.|+||++ ..+ +.+..+. .| ..|.+++|+|++.++++++. +..|.+|.+..
T Consensus 331 ~i~iw~~~~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~ 391 (450)
T 2vdu_B 331 CIIILEMSEKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNL 391 (450)
T ss_dssp EEEEEEECSSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEET
T ss_pred eEEEEEeccCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEc
Confidence 9999999 555 3444444 34 78999999996544444443 55689998864
No 121
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2e-27 Score=251.13 Aligned_cols=262 Identities=10% Similarity=0.006 Sum_probs=204.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 73 RWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIW 152 (689)
Q Consensus 73 ~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vw 152 (689)
.+.+++.+|++|+.||.|++||+.++. .+..+. ...|.++.|+|+ +++++.|+.|++|
T Consensus 43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~-----------------~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w 100 (343)
T 3lrv_A 43 SMYYDKWVCMCRCEDGALHFTQLKDSK-----------------TITTIT--TPNPRTGGEHPA---IISRGPCNRLLLL 100 (343)
T ss_dssp SSSEEEEEEEEEEETTEEEEEEESSSS-----------------CEEEEE--EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred hhcCCCCEEEEECCCCcEEEEECCCCc-----------------EEEEEe--cCCceeeeeCCc---eEEecCCCeEEEE
Confidence 445678899999999999999998873 333333 456778889887 9999999999999
Q ss_pred EcC---------CCeEEEEEe-cCCCCeEEEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 153 NMS---------TGICTAVLR-GHSSLVKGVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 153 d~~---------~~~~~~~l~-~h~~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
+.. +++.+..+. .|...|.+++|+| ++++|++++.|++|++||+++++.......+. ...+.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-----~~~i~~ 175 (343)
T 3lrv_A 101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-----DVEYSS 175 (343)
T ss_dssp ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-----SCCCCE
T ss_pred EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-----CCceEE
Confidence 665 555455544 6778999999999 99999999999999999999988865543332 123789
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCceee-eeecC-CCCCEEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT-FDFLG-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
++|+|+|.+|++++. ...+.+|+....... ..+.. |.++|.+++|+|++
T Consensus 176 ~~~~pdg~~lasg~~----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g------------------------- 226 (343)
T 3lrv_A 176 GVLHKDSLLLALYSP----DGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNG------------------------- 226 (343)
T ss_dssp EEECTTSCEEEEECT----TSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTS-------------------------
T ss_pred EEECCCCCEEEEEcC----CCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCC-------------------------
Confidence 999999999999865 457789998887766 66777 99999999999987
Q ss_pred cCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc--cCCCCe--EEEEEccCCCeEEEEeC-CCcEEEEEeecccccc
Q 040062 299 GGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH--FFTQSV--VDLSWSPDGYSLFACSL-DGTVANFHFEVKELGH 373 (689)
Q Consensus 299 ~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~--~h~~~V--~~l~~spdg~~L~sgs~-DG~I~vwd~~~~~l~~ 373 (689)
.+|++++ |+.|++||+++.+.+..+.. .|...+ .+++|+|+|++|++++. |+.|++|+++......
T Consensus 227 --------~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~ 297 (343)
T 3lrv_A 227 --------YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNW 297 (343)
T ss_dssp --------SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSE
T ss_pred --------CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccce
Confidence 7899999 55999999999877654432 122333 46999999999999998 9999999997654221
Q ss_pred ccChHHHHHHHHhccCCccCceeeeecCc---hhhhhHhhccccce
Q 040062 374 RLSDAELDELKRSRYGDVRGRLANLAETP---AQLLLEAASAKETT 416 (689)
Q Consensus 374 ~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp---dg~~Las~s~DG~v 416 (689)
.. ..+..+.|++ +...|++++.||.+
T Consensus 298 ~~-----------------~~~~~~~~~~~~~~~~~l~~~~~d~~~ 326 (343)
T 3lrv_A 298 TK-----------------DEESALCLQSDTADFTDMDVVCGDGGI 326 (343)
T ss_dssp EE-----------------EEEEECCC----CCCCEEEEEEETTEE
T ss_pred Ee-----------------cCceeEecCccccccceeEEEecCCce
Confidence 11 2577889998 88999999999998
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.95 E-value=3.6e-25 Score=237.41 Aligned_cols=305 Identities=14% Similarity=0.093 Sum_probs=230.9
Q ss_pred ceEEEEEEcCCCCEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-EeCCCeEE
Q 040062 14 MQIFSIDVQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-GSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~Dg~I~ 91 (689)
..+.+++|+|++++| ++++.|+.|++||+.+ ++.+..+..|. .+.+++|+|++++|+. ++.|+.|+
T Consensus 32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~-----------~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~ 99 (391)
T 1l0q_A 32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTAT-----------NNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLS 99 (391)
T ss_dssp SSEEEEEECTTSSEEEEEEGGGTEEEEEETTT-----------TEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEE
T ss_pred CCcceEEECCCCCEEEEECCCCCeEEEEECCC-----------CeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEE
Confidence 369999999999987 6666899999999986 67777777555 8999999999998854 55679999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCe
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLV 170 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V 170 (689)
+||+.++ +....+.. ...+.+++|+|++++| ++++.|+.|++||+.+++.+..+..| ..+
T Consensus 100 v~d~~~~-----------------~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~ 160 (391)
T 1l0q_A 100 VIDTTSN-----------------TVAGTVKT-GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSP 160 (391)
T ss_dssp EEETTTT-----------------EEEEEEEC-SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSE
T ss_pred EEECCCC-----------------eEEEEEeC-CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-CCc
Confidence 9999887 55556654 4568999999999977 67888999999999999999888865 557
Q ss_pred EEEEEccCCCEE-EEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 171 KGVAWDPIGSFI-ASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 171 ~~l~~spdg~~l-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
.+++|+|++++| ++++.|+.|++||+++++....+... ..+..++|+|+++++++++... ....+.+|+..
T Consensus 161 ~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~g~~l~~~~~~~-~~~~v~~~d~~ 232 (391)
T 1l0q_A 161 KGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-------AAPSGIAVNPEGTKAYVTNVDK-YFNTVSMIDTG 232 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-------SEEEEEEECTTSSEEEEEEECS-SCCEEEEEETT
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEecC-------CCccceEECCCCCEEEEEecCc-CCCcEEEEECC
Confidence 999999999887 56778899999999998877666532 2378899999999999886311 24567788887
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE-EEEeCCCcEEEEeCCCCCc
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg~I~iwd~~~~~~ 328 (689)
.......+..|. .+..++|+|++ ++| ++++.|+.|++||+.+++.
T Consensus 233 ~~~~~~~~~~~~-~~~~~~~s~dg---------------------------------~~l~~s~~~d~~v~v~d~~~~~~ 278 (391)
T 1l0q_A 233 TNKITARIPVGP-DPAGIAVTPDG---------------------------------KKVYVALSFXNTVSVIDTATNTI 278 (391)
T ss_dssp TTEEEEEEECCS-SEEEEEECTTS---------------------------------SEEEEEETTTTEEEEEETTTTEE
T ss_pred CCeEEEEEecCC-CccEEEEccCC---------------------------------CEEEEEcCCCCEEEEEECCCCcE
Confidence 777666666654 47889999886 555 6778899999999999887
Q ss_pred eEEecccCCCCe---EEEE------------EccCC----------CeEEEEeCCCcEEEEEeeccccccccChHHHHHH
Q 040062 329 LFVAKHFFTQSV---VDLS------------WSPDG----------YSLFACSLDGTVANFHFEVKELGHRLSDAELDEL 383 (689)
Q Consensus 329 ~~~~~~~h~~~V---~~l~------------~spdg----------~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~ 383 (689)
+..+... ..+. ..+. |+.+. ..+...+.|..+++|++..+....
T Consensus 279 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~g~~~~---------- 347 (391)
T 1l0q_A 279 TATMAVG-KNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWKWDFGDGSSSK---------- 347 (391)
T ss_dssp EEEEECS-SSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEEEECSSSCEEC----------
T ss_pred EEEEECC-cCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEEEECCCCcccC----------
Confidence 7665432 2111 0112 22221 235556678899999997664321
Q ss_pred HHhccCCccCceeeeecCchhhhhHhhc
Q 040062 384 KRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 384 ~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
+ .-....|+++|.+.++..
T Consensus 348 -------~--~~~~~~~~~~g~y~~~~~ 366 (391)
T 1l0q_A 348 -------K--QNPTHTYSETGIYTVRLT 366 (391)
T ss_dssp -------S--SSCEECCSSCEEEEEEEE
T ss_pred -------c--CCCeEEeCCCceEEEEEE
Confidence 1 123467999998877543
No 123
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=4e-26 Score=234.60 Aligned_cols=290 Identities=12% Similarity=0.071 Sum_probs=197.2
Q ss_pred eEEEEEEcCCCC---EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC--CCe
Q 040062 15 QIFSIDVQPGAL---RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD--DQV 89 (689)
Q Consensus 15 ~I~si~~spdg~---~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~--Dg~ 89 (689)
.+.++-|-.-|- -+++++. ..|++|+..+. ...+.++++..|..+|..+.|.||..-|+.... =..
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~--------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 111 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDA--------WQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEI 111 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSS--------SBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSE
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCC--------ccceeeEEEeccCceeEEEEEcCcccceeeeeeccccc
Confidence 456666655442 4667776 68999999861 124899999999999999999996553332221 111
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEc-CCCeEEEEEecC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS--LDNTIHIWNM-STGICTAVLRGH 166 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs--~Dg~I~vwd~-~~~~~~~~l~~h 166 (689)
-.++.+.-.. +-+.+.......+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+..|
T Consensus 112 ~~v~sla~sp-----------d~~~~~~~l~s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~ 177 (356)
T 2w18_A 112 REIRALFCSS-----------DDESEKQVLLKSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLM 177 (356)
T ss_dssp EEEEEECC-----------------CCEEEEEEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEEC
T ss_pred cceEEEEECC-----------CccccccEEEeCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeeccC
Confidence 1222221110 111112233334455555554 4565555543 5999999999 458888999999
Q ss_pred CCCeEEEEEcc---CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC-------
Q 040062 167 SSLVKGVAWDP---IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF------- 236 (689)
Q Consensus 167 ~~~V~~l~~sp---dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~------- 236 (689)
...+..++|++ ++.+|++++.|++|+|||++++++++++..+... ...+..++|+|+|.++++.+..
T Consensus 178 ~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~---v~~v~~vafSpdG~~lvs~s~~~~~w~la 254 (356)
T 2w18_A 178 PPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY---QASVCHKAYSEMGLLFIVLSHPCAKESES 254 (356)
T ss_dssp CCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC------CCCEEEEEEETTEEEEEEC---------
T ss_pred CCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc---eeeeEEEEECCCCCEEEEeccCCCcceee
Confidence 99999999999 7799999999999999999999999998754321 1247788999999998775431
Q ss_pred -CCCccccceeecCCceeeeee-----cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE
Q 040062 237 -QKPRHSAPVLERGEWAATFDF-----LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA 310 (689)
Q Consensus 237 -~~~~~~~~i~~~~~~~~~~~l-----~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 310 (689)
......+.+|+..+......+ .+|...+....++ +.+++
T Consensus 255 SGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s-----------------------------------g~~lA 299 (356)
T 2w18_A 255 LRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK-----------------------------------DHCAA 299 (356)
T ss_dssp ---CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE-----------------------------------TTEEE
T ss_pred ccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC-----------------------------------CCEEE
Confidence 233456667776655443222 2443333222221 36899
Q ss_pred EEeCCCcEEEEeCCCCCceEEecccCCCC-eEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 311 IGSQDRTITVWTTASPRPLFVAKHFFTQS-VVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 311 sgs~Dg~I~iwd~~~~~~~~~~~~~h~~~-V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
+++.|++|+|||+.+++.+..+.. |... +..++|||||++|++|+.|++|+|||+
T Consensus 300 SgS~DgTIkIWDl~tGk~l~tL~g-H~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 300 AILTSGTIAIWDLLLGQCTALLPP-VSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEETTSCEEEEETTTCSEEEEECC-C--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEecC-CCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999998864 4544 556899999999999999999999996
No 124
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.95 E-value=7.3e-26 Score=239.42 Aligned_cols=252 Identities=17% Similarity=0.230 Sum_probs=199.8
Q ss_pred ceeeeeecCCCCcEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEE
Q 040062 56 QRLLATLRDHFGSVNCVRWAKH---GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLN 132 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspd---g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 132 (689)
.+.+..+.+|.+.|++++|+|+ |++|++|+.||.|+|||+.+... .....+.+|...|.+++
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~---------------~~~~~~~~h~~~v~~~~ 93 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ---------------TIPKAQQMHTGPVLDVC 93 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC---------------EEEEEEEECSSCEEEEE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc---------------eeEEEeccccCCEEEEE
Confidence 5677788999999999999998 69999999999999999987321 34477888999999999
Q ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEE--ccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc
Q 040062 133 WSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW--DPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 133 ~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~ 210 (689)
|+|++++|++++.|+.|++||+.+++.+. +..|...|.+++| ++++++|++++.|+.|++||+++++.+..+..+
T Consensus 94 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~-- 170 (368)
T 3mmy_A 94 WSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLP-- 170 (368)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECS--
T ss_pred ECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecC--
Confidence 99999999999999999999999998776 4559999999999 889999999999999999999876655443321
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVG 290 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~ 290 (689)
..+.++.+.+
T Consensus 171 ---------------------------------------------------~~~~~~~~~~------------------- 180 (368)
T 3mmy_A 171 ---------------------------------------------------ERCYCADVIY------------------- 180 (368)
T ss_dssp ---------------------------------------------------SCEEEEEEET-------------------
T ss_pred ---------------------------------------------------CCceEEEecC-------------------
Confidence 1233344432
Q ss_pred ccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE-ecccCCCCeEEEEEccCCCe----EEEEeCCCcEEEEE
Q 040062 291 WTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV-AKHFFTQSVVDLSWSPDGYS----LFACSLDGTVANFH 365 (689)
Q Consensus 291 ~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~spdg~~----L~sgs~DG~I~vwd 365 (689)
..+++++.++.+++|++........ ....+...+.++++.++... |++++.||.|++|+
T Consensus 181 ----------------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~ 244 (368)
T 3mmy_A 181 ----------------PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY 244 (368)
T ss_dssp ----------------TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred ----------------CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence 3678888999999999987654433 33334556777777777665 99999999999999
Q ss_pred eeccccccccChHHHHHHHHhccCCccC------------ceeeeecCchhhhhHhhccccceeeeeeec
Q 040062 366 FEVKELGHRLSDAELDELKRSRYGDVRG------------RLANLAETPAQLLLEAASAKETTTKKVVSD 423 (689)
Q Consensus 366 ~~~~~l~~~l~~~~~~~~~~~~~g~~~~------------~I~~l~~Spdg~~Las~s~DG~v~~~~~~~ 423 (689)
++.......+ ..+..|.. .|.+++|+|++.+|++++.||.| +++..
T Consensus 245 ~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i--~iwd~ 302 (368)
T 3mmy_A 245 INPPNPAKDN----------FTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRF--SFWDK 302 (368)
T ss_dssp SSCSCHHHHS----------EEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCE--EEEET
T ss_pred cCCCCccccc----------eeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeE--EEEEC
Confidence 9875321100 22222332 69999999999999999999999 66653
No 125
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=1.6e-26 Score=252.27 Aligned_cols=255 Identities=12% Similarity=0.139 Sum_probs=194.0
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
-+|. ..|++++|+|+| .++.+.+|+.+. ..+..+ .|...|.+++|||+|++||+++.||
T Consensus 49 ~gh~-~~v~~V~FsPdg-------~~~~~~~~~~~~------------~~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg 107 (588)
T 2j04_A 49 NCNS-KNLFHVKEFPLE-------FENKLDFELAQQ------------NGLLNS-QPVCYPRVCKPSPIDDWMAVLSNNG 107 (588)
T ss_dssp SSBG-GGTEEEEEECCC-------CCCTTTTSCCCS------------SCSSTT-SCSCCEEEEEECSSSSCEEEEETTS
T ss_pred cCCC-ccEEEEEECCCC-------CcceEEEEeCCC------------ceEeec-CCCCcEEEEEECCCCCEEEEEeCCC
Confidence 4688 599999999999 455655555432 223333 4588999999999999999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCC-----CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-----
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA-----DVVDLNWSPDDSILASGSLDNTIHIWNMSTGI----- 158 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~----- 158 (689)
.|+|||.+ ..+..+. |.. .|.+++|||||++|++|+.||+|+|||+.++.
T Consensus 108 ~V~iwd~~-------------------~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~ 167 (588)
T 2j04_A 108 NVSVFKDN-------------------KMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPE 167 (588)
T ss_dssp CEEEEETT-------------------EEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCC
T ss_pred cEEEEeCC-------------------ceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCcccccc
Confidence 99999953 3455555 665 59999999999999999999999999999875
Q ss_pred --EEEEE----ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce---eecc-CcccccCCcccEEEEEEcCCCC
Q 040062 159 --CTAVL----RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA---HRTD-GHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 159 --~~~~l----~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~---~~~~-~~~~~~~~~~~i~~l~~spdg~ 228 (689)
.+..+ .+|...|.+++|+|+| |++++.|++|++||+.+.... .++. .+. ..|.+++|+ |+
T Consensus 168 ~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~------~~V~svaFs--g~ 237 (588)
T 2j04_A 168 FYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASR------RKITDLKIV--DY 237 (588)
T ss_dssp CEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCS------SCCCCEEEE--TT
T ss_pred ceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeeccccc------CcEEEEEEE--CC
Confidence 36776 6677899999999999 888899999999999887642 2332 332 238889999 68
Q ss_pred eEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEE--cCCccccccccccccccccccccCCcccccCccCCCC
Q 040062 229 FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKF--NHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPY 306 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~f--sp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 306 (689)
.|++++. ..+.+|+...........+|...+..+.| +|++
T Consensus 238 ~LASa~~-----~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~--------------------------------- 279 (588)
T 2j04_A 238 KVVLTCP-----GYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKES--------------------------------- 279 (588)
T ss_dssp EEEEECS-----SEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSC---------------------------------
T ss_pred EEEEEeC-----CeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCC---------------------------------
Confidence 8888752 58889998877764444489999999999 8887
Q ss_pred cEEEEEeCCCcEEEEeCC------------------------CCCceEEecccCCCCeEEEEEccCCCeEEEEe
Q 040062 307 NVIAIGSQDRTITVWTTA------------------------SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS 356 (689)
Q Consensus 307 ~~lasgs~Dg~I~iwd~~------------------------~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 356 (689)
..+++++.||. ++|... .+. +..+. +...|.+++|||||+.||+++
T Consensus 280 ~~La~a~edG~-klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~-l~~~~--~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLEDELHVTADNIIAPYLEKKFKKWSTIWNE-FNNYE--TTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp EEEEECSSCEE-EEEESSSEEEECCCSSHHHHHHHHHHTTTTTTS-SSSSC--CEEEEEEEEECTTSSEEEEEE
T ss_pred CEEEEEcCCCC-EEEeeccEEECCCceEEEEcCCEEEEEECCCCc-eeeec--cceEEEEEEECCCCCEEEEEE
Confidence 45555555555 555542 221 22111 244589999999999999887
No 126
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=7.1e-26 Score=245.90 Aligned_cols=303 Identities=12% Similarity=0.081 Sum_probs=228.6
Q ss_pred ceEEEEEEcCCCC-EEEEEe----CCC----eEEEEeC--CcCCCCCCCCcccceee--eeecCCCCcEEEEEEcC----
Q 040062 14 MQIFSIDVQPGAL-RFATGG----GDH----KVRIWNM--KSVGKNFENDESTQRLL--ATLRDHFGSVNCVRWAK---- 76 (689)
Q Consensus 14 ~~I~si~~spdg~-~Latgs----~Dg----~V~IWd~--~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~v~fsp---- 76 (689)
..|...+|++.|. ++++|+ .|| .|+|||+ .+ ++.+ ..+.+|...+..+++++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~d~~ 131 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAP-----------GTVLAQNSYKVNKQWLRYAGHTASDEV 131 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSST-----------TCEEEEEEEEECGGGHHHHHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCC-----------CCEEeeeEEEcChhHHHHHHHHHHHHH
Confidence 3678888888884 566776 467 8999999 65 4555 55788888888877765
Q ss_pred ----------CCCEEEEEeCC------CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE
Q 040062 77 ----------HGRYIASGSDD------QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140 (689)
Q Consensus 77 ----------dg~~Lasgs~D------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L 140 (689)
.+..|+.++.+ +.|++||++.. ....+..|...+.+++|+||+++|
T Consensus 132 ~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~------------------~~~~l~~~~~~v~~~~~Spdg~~l 193 (415)
T 2hqs_A 132 FEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGY------------------NQFVVHRSPQPLMSPAWSPDGSKL 193 (415)
T ss_dssp HHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSC------------------SCEEEEEESSCEEEEEECTTSSEE
T ss_pred HHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCC------------------CCEEEeCCCCcceeeEEcCCCCEE
Confidence 26667766654 79999999753 335566788999999999999999
Q ss_pred EEEeCCC---eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEE-EEeCCC--eEEEEECCCCcceeeccCcccccCC
Q 040062 141 ASGSLDN---TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIA-SQSDDK--TVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 141 asgs~Dg---~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la-s~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
++++.++ .|++||+.+++.. .+..|...+.+++|+|||++|+ +++.|+ .|++||+.+++.. .+..+.
T Consensus 194 a~~s~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~----- 266 (415)
T 2hqs_A 194 AYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR----- 266 (415)
T ss_dssp EEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS-----
T ss_pred EEEEecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCC-----
Confidence 9999885 9999999998875 4666888999999999999888 666555 4999999887653 333332
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
..+..+.|+|||++|++++..+. ...+.+++...... ..+..|...+..++|+|++
T Consensus 267 -~~~~~~~~spdg~~l~~~s~~~g-~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdG--------------------- 322 (415)
T 2hqs_A 267 -SNNTEPTWFPDSQNLAFTSDQAG-RPQVYKVNINGGAP-QRITWEGSQNQDADVSSDG--------------------- 322 (415)
T ss_dssp -SCEEEEEECTTSSEEEEEECTTS-SCEEEEEETTSSCC-EECCCSSSEEEEEEECTTS---------------------
T ss_pred -CcccceEECCCCCEEEEEECCCC-CcEEEEEECCCCCE-EEEecCCCcccCeEECCCC---------------------
Confidence 23789999999999988765332 23455666655432 2345567788899999987
Q ss_pred cccccCccCCCCcEEEEEeCC---CcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC---cEEEEEeec
Q 040062 295 TSKIGGKESQPYNVIAIGSQD---RTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG---TVANFHFEV 368 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG---~I~vwd~~~ 368 (689)
++|++++.+ ..|++||+.+++... +.. +. .+.+++|+|||++|++++.|+ .|++||+..
T Consensus 323 ------------~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~~-~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 323 ------------KFMVMVSSNGGQQHIAKQDLATGGVQV-LSS-TF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp ------------SEEEEEEECSSCEEEEEEETTTCCEEE-CCC-SS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS
T ss_pred ------------CEEEEEECcCCceEEEEEECCCCCEEE-ecC-CC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC
Confidence 677777654 589999999887643 332 33 799999999999999988877 799999875
Q ss_pred cccccccChHHHHHHHHhccCCccCceeeeecCchhh
Q 040062 369 KELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL 405 (689)
Q Consensus 369 ~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~ 405 (689)
+.. .....|.+.|.+++|+|.-.
T Consensus 388 ~~~--------------~~l~~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFK--------------ARLPATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCE--------------EECCCSSSEEEEEEECCCCC
T ss_pred CcE--------------EEeeCCCCCCcCCccccccc
Confidence 443 33345677899999999643
No 127
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=1.1e-24 Score=244.46 Aligned_cols=324 Identities=14% Similarity=0.115 Sum_probs=245.2
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc--CC
Q 040062 20 DVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK--KP 97 (689)
Q Consensus 20 ~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl--~~ 97 (689)
.|+|++.++++++.|++|.+||..+ ++++.++..+.. +.+++|+|+|++|++++.|+.|.+||+ .+
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t-----------~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t 211 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDS-----------KKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKE 211 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTT-----------CCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCC-----------ceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCC
Confidence 3889999999999999999999987 777888874433 899999999999999999999999999 55
Q ss_pred CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC----CCCEEEEEe-CCCeEEEEEcCCCeEEEEEecC------
Q 040062 98 GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP----DDSILASGS-LDNTIHIWNMSTGICTAVLRGH------ 166 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp----dg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h------ 166 (689)
+ +.+..+. +...+..++|+| |+++|++++ .+++|.+||..+++++..+..+
T Consensus 212 ~-----------------~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~ 273 (543)
T 1nir_A 212 P-----------------TKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDT 273 (543)
T ss_dssp C-----------------EEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred C-----------------cEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCc
Confidence 5 5666676 455689999999 999999888 4899999999999999888652
Q ss_pred -----CCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 167 -----SSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 167 -----~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
...+.++.++|++. ++++...+++|.+||+.+.+.+...... ...++..+.|+|+|+++++++.. .
T Consensus 274 ~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-----~~~~~~~~~~spdg~~l~va~~~---~ 345 (543)
T 1nir_A 274 QTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-----AAPFLHDGGWDSSHRYFMTAANN---S 345 (543)
T ss_dssp CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-----CCSSCCCEEECTTSCEEEEEEGG---G
T ss_pred cccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEec-----cCcCccCceECCCCCEEEEEecC---C
Confidence 23789999999775 5566778899999999886654411111 12336789999999988776542 3
Q ss_pred cccceeecCCceeeeeecC----CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CC
Q 040062 241 HSAPVLERGEWAATFDFLG----HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QD 315 (689)
Q Consensus 241 ~~~~i~~~~~~~~~~~l~~----h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~D 315 (689)
..+.+|+..+.+....+.. |.+....+ ++|++ +.+++++. .|
T Consensus 346 ~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~--------------------------------g~~~~s~~~~d 392 (543)
T 1nir_A 346 NKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKY--------------------------------GPVWSTSHLGD 392 (543)
T ss_dssp TEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTT--------------------------------EEEEEEEBSSS
T ss_pred CeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCC--------------------------------ccEEEeccCCC
Confidence 4567788877766555443 44333332 34442 36777776 68
Q ss_pred CcEEEEeCCC-------CCceEEecccCCCCeEEEEEccCCCeEEEEe-------CCCcEEEEEeeccccc-cccChHHH
Q 040062 316 RTITVWTTAS-------PRPLFVAKHFFTQSVVDLSWSPDGYSLFACS-------LDGTVANFHFEVKELG-HRLSDAEL 380 (689)
Q Consensus 316 g~I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-------~DG~I~vwd~~~~~l~-~~l~~~~~ 380 (689)
++|.+||+.+ .+.+..+. .|...+..+.|+|||++|++++ .+++|.|||+.+.+.. ..+...++
T Consensus 393 ~~V~v~d~~~~~~~~~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~ 471 (543)
T 1nir_A 393 GSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEW 471 (543)
T ss_dssp SEEEEEECCTTTCTTTBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHH
T ss_pred ceEEEEEeCCCCCchhcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhh
Confidence 9999999998 67777776 4567788999999999999987 3789999999998876 44433222
Q ss_pred HHHHHhccCCccCceeeeecCchhhhhHhhc-----cccceeeeeee
Q 040062 381 DELKRSRYGDVRGRLANLAETPAQLLLEAAS-----AKETTTKKVVS 422 (689)
Q Consensus 381 ~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s-----~DG~v~~~~~~ 422 (689)
. -...+..++..+.|+|||..|..+. .|++| .++.
T Consensus 472 ~-----~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i--~v~D 511 (543)
T 1nir_A 472 A-----DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSAL--VVVD 511 (543)
T ss_dssp H-----CCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEE--EEEE
T ss_pred c-----ccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeE--EEEE
Confidence 1 1233456899999999999999663 46777 4443
No 128
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.94 E-value=5.6e-25 Score=256.76 Aligned_cols=318 Identities=10% Similarity=0.089 Sum_probs=228.0
Q ss_pred ceEEEEEEcCCCCEEEEEeC-CC-----eEEEEeCCcCCCCCCCCcccceeeeeecCCC---------------------
Q 040062 14 MQIFSIDVQPGALRFATGGG-DH-----KVRIWNMKSVGKNFENDESTQRLLATLRDHF--------------------- 66 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~-Dg-----~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~--------------------- 66 (689)
..|.+++|||||++|++++. |+ .|++||+.+ ++....+..|.
T Consensus 37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (741)
T 2ecf_A 37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGS-----------GQTRLLVDSKVVLPGTETLSDEEKARRERQRI 105 (741)
T ss_dssp CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTT-----------CCEEEEECGGGTC-------------------
T ss_pred CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCC-----------CceeEccchhhcccccccccchhhhhhhhhhh
Confidence 46999999999999999998 88 899999986 34333343332
Q ss_pred ---CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 67 ---GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 67 ---~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
..|.+++|||||++|++++. +.|.+||+.++... ....+..|...+.+++|||||++|+++
T Consensus 106 ~~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~---------------~~~~l~~~~~~~~~~~~SPDG~~la~~ 169 (741)
T 2ecf_A 106 AAMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA---------------AVRQLTHGEGFATDAKLSPKGGFVSFI 169 (741)
T ss_dssp -CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT---------------SCCBCCCSSSCEEEEEECTTSSEEEEE
T ss_pred ccccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc---------------eEEEcccCCcccccccCCCCCCEEEEE
Confidence 23789999999999999987 99999999876100 122344577889999999999999998
Q ss_pred eCCCeEEEEEcCCCeEEEEEecCCCC----------------eEEEEEccCCCEEEEEeCCC------------------
Q 040062 144 SLDNTIHIWNMSTGICTAVLRGHSSL----------------VKGVAWDPIGSFIASQSDDK------------------ 189 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~~h~~~----------------V~~l~~spdg~~las~s~Dg------------------ 189 (689)
+ ++.|++||+.+++.......+... +.+++|+|||++|++++.|+
T Consensus 170 ~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~ 248 (741)
T 2ecf_A 170 R-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDV 248 (741)
T ss_dssp E-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEE
T ss_pred e-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccc
Confidence 7 569999999988776655544432 47799999999999987765
Q ss_pred ---------------eEEEEECCC-CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC-CCCCccccceeecCCce
Q 040062 190 ---------------TVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG-FQKPRHSAPVLERGEWA 252 (689)
Q Consensus 190 ---------------~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~-~~~~~~~~~i~~~~~~~ 252 (689)
.|++||+.+ ++........ .....+..++| |||++|++... .......+.+|+..+..
T Consensus 249 ~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~ 323 (741)
T 2ecf_A 249 IEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGK----EQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ 323 (741)
T ss_dssp EEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCS----CSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC
T ss_pred eEeecCCCCCCCCeeEEEEEECCCCCceEEecCCC----CcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc
Confidence 788999988 7654433220 12345889999 99999997654 22334567777766655
Q ss_pred eeeeecCCCC----CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC-CCC
Q 040062 253 ATFDFLGHNA----PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA-SPR 327 (689)
Q Consensus 253 ~~~~l~~h~~----~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~-~~~ 327 (689)
....+..+.. .+..+.|+|++ +++++++.|+.++||.+. .+.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~spdg---------------------------------~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 324 QRVLAHETSPTWVPLHNSLRFLDDG---------------------------------SILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp EEEEEEEECSSCCCCCSCCEECTTS---------------------------------CEEEEECTTSSCEEEEECSSSC
T ss_pred eEEEEEcCCCCcCCcCCceEECCCC---------------------------------eEEEEecCCCccEEEEEcCCCC
Confidence 4444433332 33456676665 788899999988888765 334
Q ss_pred ceEEecccCCCCeEEE-EEccCCCeEEE-EeCCC--cEEEEEeec-cccccccChHHHHHHHHhccCCccCceeeeecCc
Q 040062 328 PLFVAKHFFTQSVVDL-SWSPDGYSLFA-CSLDG--TVANFHFEV-KELGHRLSDAELDELKRSRYGDVRGRLANLAETP 402 (689)
Q Consensus 328 ~~~~~~~~h~~~V~~l-~~spdg~~L~s-gs~DG--~I~vwd~~~-~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp 402 (689)
...+. .|...+..+ .|+|||+.|+. ++.|+ .++||++.. +.....+. . ...+..++|||
T Consensus 371 -~~~l~-~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~-------------~-~~~~~~~~~sp 434 (741)
T 2ecf_A 371 -AAALT-HGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS-------------K-APGMHSASFAR 434 (741)
T ss_dssp -EEESC-CSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC-------------C-SCSEEEEEECT
T ss_pred -eeeee-ecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc-------------c-CCCceEEEECC
Confidence 44443 456678887 59999997765 55555 899999975 33332222 1 23478999999
Q ss_pred hhhhhHhhccc
Q 040062 403 AQLLLEAASAK 413 (689)
Q Consensus 403 dg~~Las~s~D 413 (689)
||++|+....+
T Consensus 435 dg~~l~~~~~~ 445 (741)
T 2ecf_A 435 NASVYVDSWSN 445 (741)
T ss_dssp TSSEEEEEEEE
T ss_pred CCCEEEEEecC
Confidence 99988876443
No 129
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.93 E-value=3.4e-25 Score=257.71 Aligned_cols=324 Identities=10% Similarity=0.009 Sum_probs=224.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC---cEEEEEEcCCCCEEEEEeCC----
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG---SVNCVRWAKHGRYIASGSDD---- 87 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~v~fspdg~~Lasgs~D---- 87 (689)
.+.+++|+|||+++++ +.||.|++||+.+ ++....+..|.. .|.+++|||||++|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~-----------g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~ 85 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVET-----------NTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIY 85 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGG-----------CCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCC-----------CcEEEEeccccccccccceEEECCCCCEEEEEecCccce
Confidence 4788999999998776 7899999999987 555566666654 49999999999999999875
Q ss_pred -----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 88 -----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 88 -----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
+.|.+||+.++.. ..+.....|...+..++|||||++|++++. +.|++||+.+++....
T Consensus 86 ~~~~~~~i~~~d~~~~~~---------------~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~ 149 (723)
T 1xfd_A 86 QHSYTGYYVLSKIPHGDP---------------QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRV 149 (723)
T ss_dssp SSCCCSEEEEEESSSCCC---------------EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEE
T ss_pred eecceeeEEEEECCCCce---------------EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEE
Confidence 7888999988732 111112245556889999999999999886 7999999999887776
Q ss_pred EecCCCCe------------------EEEEEccCCCEEEEEeCCC----------------------------------e
Q 040062 163 LRGHSSLV------------------KGVAWDPIGSFIASQSDDK----------------------------------T 190 (689)
Q Consensus 163 l~~h~~~V------------------~~l~~spdg~~las~s~Dg----------------------------------~ 190 (689)
...+...+ .+++|+|||++|++++.|+ .
T Consensus 150 ~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~ 229 (723)
T 1xfd_A 150 VSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSIS 229 (723)
T ss_dssp ECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEE
T ss_pred ecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeE
Confidence 66544433 7899999999999987553 7
Q ss_pred EEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC-CCCCEE----
Q 040062 191 VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG-HNAPII---- 265 (689)
Q Consensus 191 I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~-h~~~v~---- 265 (689)
|++||+.+++....+..+.........+..+.|+|||+++++..........+.+|+.........+.. +...+.
T Consensus 230 l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~ 309 (723)
T 1xfd_A 230 LHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNE 309 (723)
T ss_dssp EEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCC
T ss_pred EEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCC
Confidence 999999888765555433211112345889999999998877654444455677777665554333322 233332
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE--EeCCC------cEEEEe-CCCCCc--eEEecc
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI--GSQDR------TITVWT-TASPRP--LFVAKH 334 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las--gs~Dg------~I~iwd-~~~~~~--~~~~~~ 334 (689)
.+.|+|++ +.|+. +..++ .|++|| ...+.. ...+..
T Consensus 310 ~~~~spdg---------------------------------~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~ 356 (723)
T 1xfd_A 310 EPVFSKDG---------------------------------RKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITS 356 (723)
T ss_dssp CCEECTTS---------------------------------CSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCC
T ss_pred CceEcCCC---------------------------------CeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeec
Confidence 56777775 44443 55677 577777 344441 333332
Q ss_pred cCCCCeEE-EEEccCCCeEEEEeCC---CcEEEEEeeccc--cccccChHHHHHHHHhccCCccCceeeeecCchhhhhH
Q 040062 335 FFTQSVVD-LSWSPDGYSLFACSLD---GTVANFHFEVKE--LGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 335 ~h~~~V~~-l~~spdg~~L~sgs~D---G~I~vwd~~~~~--l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
. ...+.. ++|+|||++|+..+.+ +.+++|++.... ....+.. .. .+...+..++|||||++|+
T Consensus 357 ~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~---------~~-~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 357 G-DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSC---------DL-VENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp S-SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSST---------TS-SSSCCCCEEEECTTSSEEE
T ss_pred C-CeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceecc---------cc-cCCCCeEEEEECCCCCEEE
Confidence 2 333444 6999999999876655 789999987532 1111110 00 1344588999999998887
Q ss_pred hh
Q 040062 409 AA 410 (689)
Q Consensus 409 s~ 410 (689)
..
T Consensus 426 ~~ 427 (723)
T 1xfd_A 426 LK 427 (723)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.92 E-value=3.1e-23 Score=232.58 Aligned_cols=293 Identities=12% Similarity=0.143 Sum_probs=225.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeC--CcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC----CCCEEEEEeC-C
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNM--KSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK----HGRYIASGSD-D 87 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~--~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp----dg~~Lasgs~-D 87 (689)
.+.+++|+|||++|++++.|+.|++||+ .+ .+.+.++. +...+..++|+| +|++|++++. +
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t-----------~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~ 247 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKE-----------PTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWP 247 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSSS-----------CEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEES
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCCC-----------CcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccC
Confidence 4899999999999999999999999999 54 66777777 455689999999 9999999884 8
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec----------C-CCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG----------H-TADVVDLNWSPDDS-ILASGSLDNTIHIWNMS 155 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------h-~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~ 155 (689)
+.|.+||..++ +.+..+.. | ...+..+.+++++. ++++...++.|.+||..
T Consensus 248 ~~v~v~D~~t~-----------------~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~ 310 (543)
T 1nir_A 248 PQFAIMDGETL-----------------EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 310 (543)
T ss_dssp SEEEEEETTTC-----------------CEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECT
T ss_pred CeEEEEecccc-----------------ccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEec
Confidence 99999999877 34444443 2 23789999999876 55667788999999998
Q ss_pred CCeEEE--EEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC-CCeEE
Q 040062 156 TGICTA--VLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC-GHFIT 231 (689)
Q Consensus 156 ~~~~~~--~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd-g~~l~ 231 (689)
+.+.+. .+. +...+.++.|+|+|++|++++ .+++|.+||+.+++++..+........+. ...+ ++|+ +..++
T Consensus 311 ~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~ph~g~--g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 311 DIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGR--GANF-VHPKYGPVWS 386 (543)
T ss_dssp TSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSBCCTT--CEEE-EETTTEEEEE
T ss_pred CCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCCCCCC--Cccc-CCCCCccEEE
Confidence 765433 443 667788999999999877655 58899999999999888776432211111 1122 4677 44444
Q ss_pred EecCCCCCccccceeecCC-------ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 232 TTHGFQKPRHSAPVLERGE-------WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
+.+.. ...+.+|+... |+....+.+|...+..+.|+|++
T Consensus 387 s~~~~---d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg------------------------------- 432 (543)
T 1nir_A 387 TSHLG---DGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKS------------------------------- 432 (543)
T ss_dssp EEBSS---SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTC-------------------------------
T ss_pred eccCC---CceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCC-------------------------------
Confidence 44311 34677888777 88888898998888899999987
Q ss_pred CCcEEEEEe-------CCCcEEEEeCCCCCce-EEec-------ccCCCCeEEEEEccCCCeEEEEe-----CCCcEEEE
Q 040062 305 PYNVIAIGS-------QDRTITVWTTASPRPL-FVAK-------HFFTQSVVDLSWSPDGYSLFACS-----LDGTVANF 364 (689)
Q Consensus 305 ~~~~lasgs-------~Dg~I~iwd~~~~~~~-~~~~-------~~h~~~V~~l~~spdg~~L~sgs-----~DG~I~vw 364 (689)
++|++++ .+++|.+||+.+++.. ..+. ..+...+.++.|+|||++|+++. .|+.|.||
T Consensus 433 --~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~ 510 (543)
T 1nir_A 433 --SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 510 (543)
T ss_dssp --CEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEE
T ss_pred --CcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEE
Confidence 7888876 2679999999999877 3331 23467899999999999999763 47999999
Q ss_pred EeeccccccccC
Q 040062 365 HFEVKELGHRLS 376 (689)
Q Consensus 365 d~~~~~l~~~l~ 376 (689)
|..++++...+.
T Consensus 511 D~~t~~~~~~i~ 522 (543)
T 1nir_A 511 DDKTLKLKAVVK 522 (543)
T ss_dssp ETTTTEEEEEEC
T ss_pred ECCCceEEEeec
Confidence 999998876654
No 131
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.92 E-value=8.3e-24 Score=217.43 Aligned_cols=164 Identities=13% Similarity=0.054 Sum_probs=126.1
Q ss_pred ceEEEEEEcCC----CCEEEEEeC--------------------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcE
Q 040062 14 MQIFSIDVQPG----ALRFATGGG--------------------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSV 69 (689)
Q Consensus 14 ~~I~si~~spd----g~~Latgs~--------------------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V 69 (689)
..|.+++|+|| ++++++++. |+.|++|++.. .++.+..+..|...+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~----------dG~~~~s~~~~~~~v 181 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAE----------DGGGKENQFLMPPEE 181 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECT----------TSCEEEEEEECCCSS
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECC----------CCceeeeeccCCCce
Confidence 37888889999 888887663 77777777743 256677777888888
Q ss_pred EEEEEcC---CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC---CCEEEEEEcCCCCEE---
Q 040062 70 NCVRWAK---HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT---ADVVDLNWSPDDSIL--- 140 (689)
Q Consensus 70 ~~v~fsp---dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~l~~spdg~~L--- 140 (689)
..++|++ ++.+|++++.|++|+|||+.++ +.++++.+|. ..+.+++|+|++.++
T Consensus 182 ~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-----------------k~l~tL~g~~~~v~~v~~vafSpdG~~lvs~ 244 (356)
T 2w18_A 182 TILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-----------------QLLKKMHIDDSYQASVCHKAYSEMGLLFIVL 244 (356)
T ss_dssp CEEEEEEEETSTTEEEEEETTSEEEEEETTTC-----------------CEEEEEECCC---CCCEEEEEEETTEEEEEE
T ss_pred eeEEeeccCCCCceEEEecCCCcEEEEECCCC-----------------cEEEEEcCCCcceeeeEEEEECCCCCEEEEe
Confidence 8888888 6789999999999999999998 6777777654 467888999999876
Q ss_pred ---------EEEeCCCeEEEEEcCCCeEEEEE-----ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 141 ---------ASGSLDNTIHIWNMSTGICTAVL-----RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 141 ---------asgs~Dg~I~vwd~~~~~~~~~l-----~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
++|+.|++|++||..+++.+..+ .+|...+.+..+ ++.++++++.|++|+|||+.+++++.++.
T Consensus 245 s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l~tL~ 322 (356)
T 2w18_A 245 SHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCTALLP 322 (356)
T ss_dssp C------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred ccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEEEEec
Confidence 56889999999999999988766 367666544444 48899999999999999999888776654
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.91 E-value=1.3e-21 Score=212.18 Aligned_cols=250 Identities=14% Similarity=0.067 Sum_probs=193.3
Q ss_pred CCEEEEEeCC------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC---eEEEEEc
Q 040062 25 ALRFATGGGD------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ---VILIHEK 95 (689)
Q Consensus 25 g~~Latgs~D------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg---~I~iwdl 95 (689)
+.+++.++.+ +.|++||+.. .....+..|.+.|.+++|+|+|++|++++.|+ .|++||+
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g------------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~ 210 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDG------------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTL 210 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTS------------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred CCEEEEEEecCCCCccceEEEEcCCC------------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEEC
Confidence 6677776654 7999999874 44567778999999999999999999999885 9999999
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCC--eEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLDN--TIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
.++ +. ..+..|...+.+++|+|||++|+ +++.|+ .|++||+.+++. ..+..|...+.+
T Consensus 211 ~tg-----------------~~-~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~ 271 (415)
T 2hqs_A 211 ANG-----------------AV-RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTE 271 (415)
T ss_dssp TTC-----------------CE-EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEE
T ss_pred CCC-----------------cE-EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccc
Confidence 886 23 34667888999999999999887 666555 499999988876 566778889999
Q ss_pred EEEccCCCEEEEEeC-CC--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 173 VAWDPIGSFIASQSD-DK--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 173 l~~spdg~~las~s~-Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
++|+|+|++|++++. ++ .|.+||+.+++... +..+ ...+..++|+|+|++|+.+...+. ...+.+|+..
T Consensus 272 ~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~-l~~~------~~~~~~~~~spdG~~l~~~~~~~g-~~~i~~~d~~ 343 (415)
T 2hqs_A 272 PTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQR-ITWE------GSQNQDADVSSDGKFMVMVSSNGG-QQHIAKQDLA 343 (415)
T ss_dssp EEECTTSSEEEEEECTTSSCEEEEEETTSSCCEE-CCCS------SSEEEEEEECTTSSEEEEEEECSS-CEEEEEEETT
T ss_pred eEECCCCCEEEEEECCCCCcEEEEEECCCCCEEE-EecC------CCcccCeEECCCCCEEEEEECcCC-ceEEEEEECC
Confidence 999999999998886 44 68888988776433 2222 224788999999999998875432 4567788876
Q ss_pred CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC---cEEEEeCCCC
Q 040062 250 EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR---TITVWTTASP 326 (689)
Q Consensus 250 ~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg---~I~iwd~~~~ 326 (689)
..... .+..|. .+..++|+|++ ++|++++.++ .|++||+..
T Consensus 344 ~~~~~-~l~~~~-~~~~~~~spdg---------------------------------~~l~~~s~~~~~~~l~~~d~~g- 387 (415)
T 2hqs_A 344 TGGVQ-VLSSTF-LDETPSLAPNG---------------------------------TMVIYSSSQGMGSVLNLVSTDG- 387 (415)
T ss_dssp TCCEE-ECCCSS-SCEEEEECTTS---------------------------------SEEEEEEEETTEEEEEEEETTS-
T ss_pred CCCEE-EecCCC-CcCCeEEcCCC---------------------------------CEEEEEEcCCCccEEEEEECCC-
Confidence 65543 344554 88999999987 7788887776 799999874
Q ss_pred CceEEecccCCCCeEEEEEccCCC
Q 040062 327 RPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 327 ~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
+....+. .|.+.|.+++|+|...
T Consensus 388 ~~~~~l~-~~~~~v~~~~~~~~~~ 410 (415)
T 2hqs_A 388 RFKARLP-ATDGQVKFPAWSPYLH 410 (415)
T ss_dssp CCEEECC-CSSSEEEEEEECCCCC
T ss_pred CcEEEee-CCCCCCcCCccccccc
Confidence 4444444 4678899999999654
No 133
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.90 E-value=2.6e-22 Score=243.22 Aligned_cols=334 Identities=10% Similarity=0.000 Sum_probs=224.0
Q ss_pred eeeecCceEEEEEEcCCCCEEEEEeCC------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcE-------EEEEE
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATGGGD------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSV-------NCVRW 74 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latgs~D------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V-------~~v~f 74 (689)
...|. ..|.+++|||||++||+++.+ ..|++|++.. + ....+..|...+ .+++|
T Consensus 48 lt~~~-~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~-----------g-~~~~lt~~~~~~~~~~~~~~~~~~ 114 (1045)
T 1k32_A 48 IVSNL-GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGEN-----------G-EIKRITYFSGKSTGRRMFTDVAGF 114 (1045)
T ss_dssp EECSS-SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTT-----------T-EEEECCCCCEEEETTEECSEEEEE
T ss_pred eeeCC-CcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCC-----------C-CeEEcccCCCcccccccccccccC
Confidence 44566 589999999999999988643 4799999875 3 367788898888 99999
Q ss_pred cCCCCEEEEEeCC------CeEEEEEcCCCCCccccCCC------------------C---------CCCcccc-----e
Q 040062 75 AKHGRYIASGSDD------QVILIHEKKPGSGTTEFGSG------------------E---------PPDIENW-----K 116 (689)
Q Consensus 75 spdg~~Lasgs~D------g~I~iwdl~~~~~~~~~~~~------------------~---------~~~~~~~-----~ 116 (689)
+|||+++++++.+ ..|.+|++.++......... + ......| .
T Consensus 115 SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~ 194 (1045)
T 1k32_A 115 DPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG 194 (1045)
T ss_dssp CTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT
T ss_pred CCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEECCCC
Confidence 9999977777754 35778887665321110000 0 0001111 1
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEEEEecCC----------------------------
Q 040062 117 VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTAVLRGHS---------------------------- 167 (689)
Q Consensus 117 ~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~~l~~h~---------------------------- 167 (689)
....+.+|...+.++.|+++ .++++++.|+.+.||.+.. +.....+..|.
T Consensus 195 ~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~~~~i~~~d~~ 273 (1045)
T 1k32_A 195 AFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSKGGSIYIFNPD 273 (1045)
T ss_dssp EEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEETTEEEEECTT
T ss_pred CeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEeCCEEEEecCC
Confidence 22344667777777777766 5555666667677775432 21222222221
Q ss_pred ----------------------CCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEc
Q 040062 168 ----------------------SLVKGVAWD-PIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 168 ----------------------~~V~~l~~s-pdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
..+.+++|+ |+|++|++++ ++.|.+|++.++.... +..+. ...+..+.|+
T Consensus 274 ~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~~~~-----~~~~~~~~~s 346 (1045)
T 1k32_A 274 TEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VPEPL-----RIRYVRRGGD 346 (1045)
T ss_dssp TCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CSCCS-----CEEEEEECSS
T ss_pred ceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-ccCCC-----cceEEeeeEc
Confidence 235556666 6666655555 4566666665444322 11111 1147889999
Q ss_pred CCCCeEEEecCCCCCccccc-eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 225 PCGHFITTTHGFQKPRHSAP-VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
||+.|+.+.. ...+. +++....... .+.+|...+..++|+|++
T Consensus 347 -dg~~l~~~s~----~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG------------------------------ 390 (1045)
T 1k32_A 347 -TKVAFIHGTR----EGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNG------------------------------ 390 (1045)
T ss_dssp -SEEEEEEEET----TEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTS------------------------------
T ss_pred -CCCeEEEEEC----CCceEEEEECCCCCce-EecCCccceeeeEECCCC------------------------------
Confidence 9998888765 23444 5565443332 334788889999999987
Q ss_pred CCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC----------cEEEEEeecccccc
Q 040062 304 QPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG----------TVANFHFEVKELGH 373 (689)
Q Consensus 304 ~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG----------~I~vwd~~~~~l~~ 373 (689)
++|++++.++.|++||+.+++...... .|...+.+++|||||++|++++.++ .|++||+.+++..
T Consensus 391 ---~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~- 465 (1045)
T 1k32_A 391 ---KFAVVANDRFEIMTVDLETGKPTVIER-SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIF- 465 (1045)
T ss_dssp ---SEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEE-
T ss_pred ---CEEEEECCCCeEEEEECCCCceEEecc-CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEE-
Confidence 899999999999999999988766653 4678899999999999999887654 8999999877632
Q ss_pred ccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 374 RLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 374 ~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
....|...+..++|+|||++|+.++.++..
T Consensus 466 -------------~l~~~~~~~~~~~~spdG~~l~~~s~~~~~ 495 (1045)
T 1k32_A 466 -------------AATTENSHDYAPAFDADSKNLYYLSYRSLD 495 (1045)
T ss_dssp -------------ECSCSSSBEEEEEECTTSCEEEEEESCCCC
T ss_pred -------------EeeCCCcccCCceEcCCCCEEEEEecccCC
Confidence 222345568889999999999988876654
No 134
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.90 E-value=2.3e-21 Score=202.65 Aligned_cols=284 Identities=12% Similarity=0.074 Sum_probs=197.9
Q ss_pred EEcCCCCE-EEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-CCeEEEEEcCC
Q 040062 20 DVQPGALR-FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-DQVILIHEKKP 97 (689)
Q Consensus 20 ~~spdg~~-Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-Dg~I~iwdl~~ 97 (689)
.|.+++.+ +++++.++.|++||..+ ++....+..+...+ +++|+|+|++|++++. ++.|.+||+.+
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~ 71 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDT-----------LEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQL 71 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTT-----------CCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSS
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCcc-----------cceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCC
Confidence 45565555 67777899999999987 66666666666677 9999999997776665 88999999987
Q ss_pred CCCccccCCCCCCCcccceE-EEEEecCCCCEEEEEEcCCCCEEEEEeCCC---eEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 98 GSGTTEFGSGEPPDIENWKV-AMTLRGHTADVVDLNWSPDDSILASGSLDN---TIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~-~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg---~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
+. . ...+..+.....+++|+|++++|+++..++ .|.+||+.+++.+..+.. .....++
T Consensus 72 ~~-----------------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~ 133 (331)
T 3u4y_A 72 EP-----------------PKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI-PYDAVGI 133 (331)
T ss_dssp SS-----------------CEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC-CTTEEEE
T ss_pred Cc-----------------eeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC-CCCccce
Confidence 72 3 455555666665599999999998555553 899999999999888874 4556899
Q ss_pred EEccCCCEEEEE-eCCCe-EEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCc
Q 040062 174 AWDPIGSFIASQ-SDDKT-VIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW 251 (689)
Q Consensus 174 ~~spdg~~las~-s~Dg~-I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~ 251 (689)
+|+|+|++|+++ ..++. |.+|++.....+.... .. ..........+.|+|+|++++++... ...+.+|+....
T Consensus 134 ~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~-~~-~~~~~~~~~~~~~spdg~~l~v~~~~---~~~v~v~d~~~~ 208 (331)
T 3u4y_A 134 AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG-QE-FISGGTRPFNITFTPDGNFAFVANLI---GNSIGILETQNP 208 (331)
T ss_dssp EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE-EE-EECSSSSEEEEEECTTSSEEEEEETT---TTEEEEEECSST
T ss_pred EECCCCCEEEEEecCCCceEEEEEECCCCcEeecC-Cc-cccCCCCccceEECCCCCEEEEEeCC---CCeEEEEECCCC
Confidence 999999855544 55578 9999997644332221 00 00112236899999999988776543 245667776554
Q ss_pred ee---eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE-eCCCcEEEEeCCCCC
Q 040062 252 AA---TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG-SQDRTITVWTTASPR 327 (689)
Q Consensus 252 ~~---~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg-s~Dg~I~iwd~~~~~ 327 (689)
.. ...+. +...+..++|+|++ ++++++ ..++.|.+||+.+++
T Consensus 209 ~~~~~~~~~~-~~~~~~~~~~spdg---------------------------------~~l~v~~~~~~~i~~~d~~~~~ 254 (331)
T 3u4y_A 209 ENITLLNAVG-TNNLPGTIVVSRDG---------------------------------STVYVLTESTVDVFNFNQLSGT 254 (331)
T ss_dssp TSCEEEEEEE-CSSCCCCEEECTTS---------------------------------SEEEEECSSEEEEEEEETTTTE
T ss_pred cccceeeecc-CCCCCceEEECCCC---------------------------------CEEEEEEcCCCEEEEEECCCCc
Confidence 44 33333 33556678888876 655544 457889999999887
Q ss_pred c--eEEeccc---CC---CCeEEEEEccCCCeEEEEeC-CCcEEEEEeeccccc
Q 040062 328 P--LFVAKHF---FT---QSVVDLSWSPDGYSLFACSL-DGTVANFHFEVKELG 372 (689)
Q Consensus 328 ~--~~~~~~~---h~---~~V~~l~~spdg~~L~sgs~-DG~I~vwd~~~~~l~ 372 (689)
. +..+... +. .....++|+|||++|++++. ++.|.+||+......
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~ 308 (331)
T 3u4y_A 255 LSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVVG 308 (331)
T ss_dssp EEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEEE
T ss_pred eeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCccc
Confidence 6 3222211 11 12356899999999876654 669999999876543
No 135
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.90 E-value=1.3e-21 Score=204.79 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=187.9
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC-CeEEEEEcCCCCCccccC
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD-QVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-g~I~iwdl~~~~~~~~~~ 105 (689)
++++++.|+.|++|++.... ..+.+..+ .|...+.+++|+|+|++|++++.+ +.|.+|+++....
T Consensus 7 l~~~~~~~~~v~~~~~~~~~--------~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~----- 72 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEG--------ALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDG----- 72 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTS--------CEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTC-----
T ss_pred EEEeCCCCCeEEEEEECCCC--------cEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCC-----
Confidence 34444779999999986300 12333333 477789999999999999988886 9999999972210
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcC---CCeEEEEEecCCCCeEEEEEccCCCE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIHIWNMS---TGICTAVLRGHSSLVKGVAWDPIGSF 181 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~---~~~~~~~l~~h~~~V~~l~~spdg~~ 181 (689)
.+..+..+..+. .+..++|+|++++|++++. ++.|.+||+. ..+.+..+.. ...+.+++|+|++++
T Consensus 73 --------~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 73 --------ALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISPDNRT 142 (343)
T ss_dssp --------CEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECTTSSE
T ss_pred --------ceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECCCCCE
Confidence 113445555444 7899999999998877665 8899999994 4445555553 346889999999998
Q ss_pred EEEEe-CCCeEEEEECCC-Ccceeec--cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC----cee
Q 040062 182 IASQS-DDKTVIIWRTSD-WSLAHRT--DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE----WAA 253 (689)
Q Consensus 182 las~s-~Dg~I~iwd~~~-~~~~~~~--~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~----~~~ 253 (689)
|++++ .++.|++||+.+ ++..... .... .....+..++|+|++++++++... ...+.+|+... ...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~pdg~~l~~~~~~---~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTT---VEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEEC---STTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeeccccccc---CCCCCcceEEECCCCCEEEEEeCC---CCEEEEEEecCCCCcEEE
Confidence 88887 889999999987 5443211 1110 112347789999999988776532 23455666532 111
Q ss_pred eeee---c-CC--CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE-EEeCCCcEEEEeCCC-
Q 040062 254 TFDF---L-GH--NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQDRTITVWTTAS- 325 (689)
Q Consensus 254 ~~~l---~-~h--~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~Dg~I~iwd~~~- 325 (689)
...+ . ++ ...+..++|+|++ ++|+ ++..++.|.+||+..
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg---------------------------------~~l~v~~~~~~~i~v~d~~~~ 263 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDG---------------------------------RHLYACDRTASLITVFSVSED 263 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTS---------------------------------SEEEEEETTTTEEEEEEECTT
T ss_pred EeeccccCccccccCCccceEECCCC---------------------------------CEEEEEecCCCEEEEEEEcCC
Confidence 1111 1 11 2345678888775 5555 555789999999983
Q ss_pred -C--CceEEecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEee
Q 040062 326 -P--RPLFVAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFE 367 (689)
Q Consensus 326 -~--~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~ 367 (689)
+ +.+..+.. ...+.+++|+|+|++|++++ .|+.|.+|+++
T Consensus 264 ~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 264 GSVLSKEGFQPT--ETQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SCCEEEEEEEEC--SSSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CCceEEeeeecC--CCccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 3 23333332 23488999999999998888 68999999776
No 136
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=7.2e-22 Score=206.29 Aligned_cols=275 Identities=11% Similarity=0.029 Sum_probs=204.2
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-C-cEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCCCcc
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-G-SVNCVRWAKHGRYI-ASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-~-~V~~v~fspdg~~L-asgs~Dg~I~iwdl~~~~~~~ 102 (689)
++|++++.++.|++||+.+ ++.+..+.... . .+.+++|+|+|++| +++..++.|.+||+.++
T Consensus 2 ~~~v~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---- 66 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEK-----------MAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---- 66 (337)
T ss_dssp EEEEEEETTTEEEEEETTT-----------TEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC----
T ss_pred cEEEEcCCCCeEEEEECCC-----------CcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC----
Confidence 4789999999999999986 56666665322 1 47899999999866 55566789999999887
Q ss_pred ccCCCCCCCcccceEEEEEec-C----CCCEEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCeEEEEEec
Q 040062 103 EFGSGEPPDIENWKVAMTLRG-H----TADVVDLNWSPDDSILASGS------------LDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~-h----~~~V~~l~~spdg~~Lasgs------------~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
+....+.. + ...+.+++|+|++++|+++. .++.|.+||+.+++.+..+..
T Consensus 67 -------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 133 (337)
T 1pby_B 67 -------------ETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp -------------CEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred -------------CeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC
Confidence 33433332 1 22577899999999988886 579999999999988887774
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc-----
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR----- 240 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~----- 240 (689)
...+.+++|+|++++|+++ ++.|++||+.+++....+...... ..+.|+|++.+++.........
T Consensus 134 -~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~s~dg~~l~~~~~~~~~~~~~~~ 203 (337)
T 1pby_B 134 -PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-------AETYAQPDVLAVWNQHESSGVMATPFY 203 (337)
T ss_dssp -CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-------TTTBCCCBCCCCCCCCTTTTEEEEEEE
T ss_pred -CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-------CCceeCCCccEEeeeccCCCceeeeee
Confidence 4567889999999988888 678999999998877666543211 1236899998877654332211
Q ss_pred ---------------cccceeecCCcee-eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 241 ---------------HSAPVLERGEWAA-TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 241 ---------------~~~~i~~~~~~~~-~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
..+.+++...... ...+..+...+..++|+|++
T Consensus 204 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg------------------------------- 252 (337)
T 1pby_B 204 TARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK------------------------------- 252 (337)
T ss_dssp EEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTS-------------------------------
T ss_pred ccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCC-------------------------------
Confidence 0244555544332 23344555667778888876
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
++++++ ++.|++||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+++++....+
T Consensus 253 --~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~ 317 (337)
T 1pby_B 253 --TRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV 317 (337)
T ss_dssp --SEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred --CEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence 677777 79999999999887776653 456889999999999999999999999999887765433
No 137
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.90 E-value=6.8e-21 Score=200.57 Aligned_cols=275 Identities=12% Similarity=0.062 Sum_probs=208.9
Q ss_pred ceEEEEEEcCCCCEEEEEeC-------CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EEe
Q 040062 14 MQIFSIDVQPGALRFATGGG-------DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SGS 85 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~-------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sgs 85 (689)
..+..++|+|+|++|++++. ++.|.+||..+ ++.+..+.. ...+.+++|+|+|++|+ +..
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~-----------~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~ 108 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVT-----------LEVTQAIHN-DLKPFGATINNTTQTLWFGNT 108 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTT-----------CCEEEEEEE-SSCCCSEEEETTTTEEEEEET
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCC-----------CeEEEEEec-CCCcceEEECCCCCEEEEEec
Confidence 46899999999999988874 46899999986 566666653 34578899999999655 455
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCC---------CEEEEEEcCCCCEEEEEe--CCCeEEEEEc
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA---------DVVDLNWSPDDSILASGS--LDNTIHIWNM 154 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~---------~V~~l~~spdg~~Lasgs--~Dg~I~vwd~ 154 (689)
.++.|.+||+.++ +....+..+.. .+.+++|+|++++|++++ .++.|.+||+
T Consensus 109 ~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~ 171 (353)
T 3vgz_A 109 VNSAVTAIDAKTG-----------------EVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG 171 (353)
T ss_dssp TTTEEEEEETTTC-----------------CEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET
T ss_pred CCCEEEEEeCCCC-----------------eeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC
Confidence 5799999999887 44445544332 278999999999877776 4789999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 155 STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 155 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
.+++.+..+..+...+.+++|+|++++|++++.++.|.+||+.+++....+...... ....+..++|+|+|++++++.
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~ 249 (353)
T 3vgz_A 172 GNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDG--KEHFFINISLDTARQRAFITD 249 (353)
T ss_dssp TTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSS--SCCCEEEEEEETTTTEEEEEE
T ss_pred CCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCC--CCcccceEEECCCCCEEEEEe
Confidence 999999888866777889999999999999999999999999999887766542211 123478899999999888876
Q ss_pred CCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE-EEEe
Q 040062 235 GFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGS 313 (689)
Q Consensus 235 ~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs 313 (689)
.. ...+.+|+.........+..+. ...++|+|++ +++ ++..
T Consensus 250 ~~---~~~v~~~d~~~~~~~~~~~~~~--~~~~~~s~dg---------------------------------~~l~v~~~ 291 (353)
T 3vgz_A 250 SK---AAEVLVVDTRNGNILAKVAAPE--SLAVLFNPAR---------------------------------NEAYVTHR 291 (353)
T ss_dssp SS---SSEEEEEETTTCCEEEEEECSS--CCCEEEETTT---------------------------------TEEEEEET
T ss_pred CC---CCEEEEEECCCCcEEEEEEcCC--CceEEECCCC---------------------------------CEEEEEEC
Confidence 43 2456677766555444433322 1457777775 544 4455
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG 359 (689)
.++.|.+||+.+++.+..+.. ...+.+++|+|||++|+++..++
T Consensus 292 ~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 292 QAGKVSVIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp TTTEEEEEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred CCCeEEEEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence 789999999999988777654 44689999999999888877654
No 138
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=6e-21 Score=231.20 Aligned_cols=312 Identities=10% Similarity=-0.001 Sum_probs=217.8
Q ss_pred CceeeecCceEEEEEEc-CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC-cEEEEEEcCCCCEEEE
Q 040062 6 PSWVRHEGMQIFSIDVQ-PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG-SVNCVRWAKHGRYIAS 83 (689)
Q Consensus 6 ~~~~~H~g~~I~si~~s-pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~fspdg~~Las 83 (689)
+.|..|. ..|.+++|| |||++|++++ ++.|++|+... .. ...+..|.+ .+.+++|+ ||+.|++
T Consensus 289 ~~~~~~~-~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~s-dg~~l~~ 353 (1045)
T 1k32_A 289 EDRIISI-PSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG-----------TY-VLKVPEPLRIRYVRRGGD-TKVAFIH 353 (1045)
T ss_dssp CSEEEEC-GGGGEEEEEECGGGCEEEEE-TTEEEEECTTS-----------SB-EEECSCCSCEEEEEECSS-SEEEEEE
T ss_pred ccccccc-cccceeeecCCCCCEEEEEE-cCEEEEEcCCC-----------Cc-eEEccCCCcceEEeeeEc-CCCeEEE
Confidence 4455666 479999999 9999999988 68999999875 23 334667777 89999999 9999999
Q ss_pred EeCCCeEE-EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 84 GSDDQVIL-IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 84 gs~Dg~I~-iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
++.+..+. +|++..+ . ...+.+|...+..++|+||+++|++++.++.|++||+.+++....
T Consensus 354 ~s~~~~l~~~~d~~~~-----------------~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~ 415 (1045)
T 1k32_A 354 GTREGDFLGIYDYRTG-----------------K-AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 415 (1045)
T ss_dssp EETTEEEEEEEETTTC-----------------C-EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred EECCCceEEEEECCCC-----------------C-ceEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEe
Confidence 99988888 8898765 2 233447888999999999999999999999999999999998888
Q ss_pred EecCCCCeEEEEEccCCCEEEEEeCCC----------eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 163 LRGHSSLVKGVAWDPIGSFIASQSDDK----------TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 163 l~~h~~~V~~l~~spdg~~las~s~Dg----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
+..|...+.+++|+|||++|++++.++ .|++||+.+++ ...+..+.. .+..+.|+|||++|+.
T Consensus 416 ~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~------~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 416 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENS------HDYAPAFDADSKNLYY 488 (1045)
T ss_dssp EECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSS------BEEEEEECTTSCEEEE
T ss_pred ccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCc------ccCCceEcCCCCEEEE
Confidence 878999999999999999999887654 89999998876 444443322 2677999999999988
Q ss_pred ecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccc--cccccccc----------ccccccc-cCCccccc
Q 040062 233 THGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRR--NSASSQEV----------KAAPVGW-TNGTSKIG 299 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~--~~~~~~~~----------~~~~~~~-~~~~~~~~ 299 (689)
.+..+.. ..|+....... ..+...+..+.++++.... ........ ....... ........
T Consensus 489 ~s~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~ 561 (1045)
T 1k32_A 489 LSYRSLD----PSPDRVVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRM 561 (1045)
T ss_dssp EESCCCC----CEECSSSSCEE---CCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEE
T ss_pred EecccCC----cCcchhccccc---cccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhh
Confidence 7653321 22322211111 1123344455555443322 11000000 0000000 00011112
Q ss_pred CccCCCCcEEEE-------------EeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 300 GKESQPYNVIAI-------------GSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 300 ~~~s~~~~~las-------------gs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
...++++.++++ ......|++||+.+++..... ..+.+++|||||++|++++.| .|++||+
T Consensus 562 ~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~-----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~ 635 (1045)
T 1k32_A 562 IIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK-----NNLTDLRLSADRKTVMVRKDD-GKIYTFP 635 (1045)
T ss_dssp EEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE-----EEEEEEEECTTSCEEEEEETT-SCEEEEE
T ss_pred eEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee-----cCcceEEECCCCCEEEEEcCC-cEEEEeC
Confidence 233555666664 123457889999887754332 458899999999999999866 8999999
Q ss_pred eccc
Q 040062 367 EVKE 370 (689)
Q Consensus 367 ~~~~ 370 (689)
.+++
T Consensus 636 ~~~~ 639 (1045)
T 1k32_A 636 LEKP 639 (1045)
T ss_dssp SSCT
T ss_pred ccCc
Confidence 8876
No 139
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1.7e-21 Score=226.02 Aligned_cols=310 Identities=14% Similarity=0.107 Sum_probs=209.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceee-eeecCCC-----------------CcEEEEEEcC
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLL-ATLRDHF-----------------GSVNCVRWAK 76 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~-~~l~~h~-----------------~~V~~v~fsp 76 (689)
.+..+.|. |..+++++.|+ | +||+.+ ++.+ ..+..|. ..|.+++|+|
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~t-----------g~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp 91 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKAN-----------GKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG 91 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC------------------CEEEEHHHHHTTC-----------CCCEEEEETT
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCC-----------CcEeeEEeechhHhhhhccchhccccccccCceeEEECC
Confidence 35667777 66777778887 8 999987 3331 2222222 4699999999
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
| ++++.+. |+.|++||+.++ + ...+..+...+.+++|||||++|+++ .|+.|++||+.+
T Consensus 92 d-~~~~~~~-~~~i~~~d~~~~-----------------~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~ 150 (706)
T 2z3z_A 92 R-GLVVLFT-QGGLVGFDMLAR-----------------K-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGK 150 (706)
T ss_dssp T-TEEEEEE-TTEEEEEETTTT-----------------E-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBC
T ss_pred C-CeEEEEE-CCEEEEEECCCC-----------------c-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCc
Confidence 9 6666654 599999999876 2 33445567778999999999999985 689999999998
Q ss_pred -----CeEEEEEecCCCC--------------eEEEEEccCCCEEEEEe-------------------------------
Q 040062 157 -----GICTAVLRGHSSL--------------VKGVAWDPIGSFIASQS------------------------------- 186 (689)
Q Consensus 157 -----~~~~~~l~~h~~~--------------V~~l~~spdg~~las~s------------------------------- 186 (689)
++.......+... +.+++|+|||++|++++
T Consensus 151 ~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~ 230 (706)
T 2z3z_A 151 LGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGT 230 (706)
T ss_dssp TTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTS
T ss_pred ccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCC
Confidence 7766555444333 47899999999999987
Q ss_pred --CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC-CCccccceeecCCc-eeeeeec-CCC
Q 040062 187 --DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ-KPRHSAPVLERGEW-AATFDFL-GHN 261 (689)
Q Consensus 187 --~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~-~~~~~~~i~~~~~~-~~~~~l~-~h~ 261 (689)
.+..|++||+.+++........ .....+..+.|+|||++|+++.... .....+.+|+..+. ....... .+.
T Consensus 231 ~~~~~~l~~~d~~~~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~ 306 (706)
T 2z3z_A 231 PSHHVTVGIYHLATGKTVYLQTGE----PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDK 306 (706)
T ss_dssp CCCEEEEEEEETTTTEEEECCCCS----CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECS
T ss_pred CCCeeEEEEEECCCCceEeeccCC----CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCC
Confidence 4468999999887765443211 1234588999999999988865332 22345667776554 2211111 111
Q ss_pred C---CEEEEEEcC--CccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC-CCCceEEeccc
Q 040062 262 A---PIIVVKFNH--SMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA-SPRPLFVAKHF 335 (689)
Q Consensus 262 ~---~v~~v~fsp--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~ 335 (689)
. .+..+.|+| + ++++++++.|+.++||++. .+..+..+. .
T Consensus 307 ~~~~~~~~~~~sp~~d---------------------------------g~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~ 352 (706)
T 2z3z_A 307 HYVEPLHPLTFLPGSN---------------------------------NQFIWQSRRDGWNHLYLYDTTGRLIRQVT-K 352 (706)
T ss_dssp SCCCCCSCCEECTTCS---------------------------------SEEEEEECTTSSCEEEEEETTSCEEEECC-C
T ss_pred CeECccCCceeecCCC---------------------------------CEEEEEEccCCccEEEEEECCCCEEEecC-C
Confidence 1 124456666 4 4789999999999999886 455555554 3
Q ss_pred CCCCeEE-EEEccCCCeEEEEeCC-C----cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHh
Q 040062 336 FTQSVVD-LSWSPDGYSLFACSLD-G----TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEA 409 (689)
Q Consensus 336 h~~~V~~-l~~spdg~~L~sgs~D-G----~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las 409 (689)
+...+.+ ++|+|||+.|+.++.+ + .|+.|++.++++ ..+ . +...+..++|||||++|+.
T Consensus 353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l-------------~-~~~~~~~~~~spdg~~l~~ 417 (706)
T 2z3z_A 353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDL-------------T-PESGMHRTQLSPDGSAIID 417 (706)
T ss_dssp SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EES-------------C-CSSSEEEEEECTTSSEEEE
T ss_pred CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eec-------------c-CCCceEEEEECCCCCEEEE
Confidence 5666776 8999999988765544 4 455555555442 111 1 3345889999999998887
Q ss_pred hccc
Q 040062 410 ASAK 413 (689)
Q Consensus 410 ~s~D 413 (689)
.+.+
T Consensus 418 ~~~~ 421 (706)
T 2z3z_A 418 IFQS 421 (706)
T ss_dssp EEEC
T ss_pred EecC
Confidence 6544
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.88 E-value=2.4e-21 Score=197.68 Aligned_cols=255 Identities=14% Similarity=0.117 Sum_probs=182.6
Q ss_pred EEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CCCccccCCCC
Q 040062 30 TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKP-GSGTTEFGSGE 108 (689)
Q Consensus 30 tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~-~~~~~~~~~~~ 108 (689)
.++.|+.|++||+.. .+. ..+..|.+.|.+++|+|+|++|++++ ++.|++||+.+ +.
T Consensus 17 ~~~~~~~i~~~d~~~-----------~~~-~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~--------- 74 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRT-----------RKM-RVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS--------- 74 (297)
T ss_dssp -CCCCEEEEEEETTT-----------TEE-EEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS---------
T ss_pred CCCcceeEEEEeCCC-----------Cce-eeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC---------
Confidence 345789999999986 343 34556889999999999999999987 78999999987 62
Q ss_pred CCCcccceEEEEEecC-CCCEEEEEEcCCCCEEEEEeC--CC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEE
Q 040062 109 PPDIENWKVAMTLRGH-TADVVDLNWSPDDSILASGSL--DN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIA 183 (689)
Q Consensus 109 ~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~Lasgs~--Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 183 (689)
.......| ...+.+++|+||+++|++++. ++ .|.+|++.+++ ...+..+ ..+..++|+|++++|+
T Consensus 75 --------~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~-~~~~~~~~spdg~~l~ 144 (297)
T 2ojh_A 75 --------PEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKN-LPSYWHGWSPDGKSFT 144 (297)
T ss_dssp --------CEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCSS-SSEEEEEECTTSSEEE
T ss_pred --------ceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeecC-CCccceEECCCCCEEE
Confidence 22333344 367889999999999999983 34 45555555554 3344433 4588999999999877
Q ss_pred -EEeCCCeEEEEECC--CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC-CceeeeeecC
Q 040062 184 -SQSDDKTVIIWRTS--DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG-EWAATFDFLG 259 (689)
Q Consensus 184 -s~s~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~ 259 (689)
+++.|+.++||+++ ++.. ..+..+ ...+..+.|+|+|++|+.+..... .+.+|... .......+..
T Consensus 145 ~~~~~~~~~~l~~~~~~~~~~-~~~~~~------~~~~~~~~~s~dg~~l~~~~~~~~---~~~i~~~~~~~~~~~~~~~ 214 (297)
T 2ojh_A 145 YCGIRDQVFDIYSMDIDSGVE-TRLTHG------EGRNDGPDYSPDGRWIYFNSSRTG---QMQIWRVRVDGSSVERITD 214 (297)
T ss_dssp EEEEETTEEEEEEEETTTCCE-EECCCS------SSCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCEEECCC
T ss_pred EEECCCCceEEEEEECCCCcc-eEcccC------CCccccceECCCCCEEEEEecCCC---CccEEEECCCCCCcEEEec
Confidence 77789999999864 3332 223222 233789999999998887754222 34445432 2233445667
Q ss_pred CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC-----------CcEEEEeCCCCCc
Q 040062 260 HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD-----------RTITVWTTASPRP 328 (689)
Q Consensus 260 h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D-----------g~I~iwd~~~~~~ 328 (689)
|...+..+.|+|++ ++|++++.+ +.|++||+.+++.
T Consensus 215 ~~~~~~~~~~s~dg---------------------------------~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 215 SAYGDWFPHPSPSG---------------------------------DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp CSEEEEEEEECTTS---------------------------------SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCcccCCeEECCCC---------------------------------CEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 77888899999886 677777665 5699999998876
Q ss_pred eEEec-ccCCCCeEEEEEccCCCeEEEEeCCC
Q 040062 329 LFVAK-HFFTQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 329 ~~~~~-~~h~~~V~~l~~spdg~~L~sgs~DG 359 (689)
..... ..|...+.+++|+|||++|++++.|.
T Consensus 262 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 262 ETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred eeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 44332 24577899999999999998887653
No 141
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.88 E-value=6.1e-21 Score=222.55 Aligned_cols=283 Identities=9% Similarity=0.086 Sum_probs=204.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccce--eeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQR--LLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~--~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.|.+++|||||++|++++. +.|++||+.. +. .+..+..|...+.+++|+|||++|++++. +.|++
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~-----------~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-~~i~~ 176 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQ-----------EGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-RNLWV 176 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSS-----------CSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-TEEEE
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCC-----------CCcceEEEcccCCcccccccCCCCCCEEEEEeC-CcEEE
Confidence 4889999999999999987 8999999986 21 44566778889999999999999999874 68999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCC----------------CEEEEEEcCCCCEEEEEeCCC---------
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA----------------DVVDLNWSPDDSILASGSLDN--------- 147 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~----------------~V~~l~~spdg~~Lasgs~Dg--------- 147 (689)
||+.++ +.......+.. .+..++|||||++|++++.|+
T Consensus 177 ~d~~~g-----------------~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~ 239 (741)
T 2ecf_A 177 IDLASG-----------------RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRY 239 (741)
T ss_dssp EETTTT-----------------EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEE
T ss_pred EecCCC-----------------CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecC
Confidence 999876 22222222222 247899999999999988776
Q ss_pred ------------------------eEEEEEcCC-CeEEEEEe--cCCCCeEEEEEccCCCEEEEEeC-----CCeEEEEE
Q 040062 148 ------------------------TIHIWNMST-GICTAVLR--GHSSLVKGVAWDPIGSFIASQSD-----DKTVIIWR 195 (689)
Q Consensus 148 ------------------------~I~vwd~~~-~~~~~~l~--~h~~~V~~l~~spdg~~las~s~-----Dg~I~iwd 195 (689)
.|++||+.+ ++...... .|...+..++| |||++|++++. +..|++||
T Consensus 240 ~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d 318 (741)
T 2ecf_A 240 EVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVT 318 (741)
T ss_dssp EECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEE
T ss_pred CCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEE
Confidence 899999988 77655443 37788999999 99999987754 56899999
Q ss_pred CCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEE-EEcCCcc
Q 040062 196 TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVV-KFNHSMF 274 (689)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v-~fsp~~~ 274 (689)
+.+++....+..+.... ...+..+.|+|||++++++..++. ..+..++.... ...+..|...+..+ .|+|++
T Consensus 319 ~~~g~~~~~~~~~~~~~--~~~~~~~~~spdg~~~~~~~~~g~--~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg- 391 (741)
T 2ecf_A 319 LASNQQRVLAHETSPTW--VPLHNSLRFLDDGSILWSSERTGF--QHLYRIDSKGK--AAALTHGNWSVDELLAVDEKA- 391 (741)
T ss_dssp TTTCCEEEEEEEECSSC--CCCCSCCEECTTSCEEEEECTTSS--CEEEEECSSSC--EEESCCSSSCEEEEEEEETTT-
T ss_pred CCCCceEEEEEcCCCCc--CCcCCceEECCCCeEEEEecCCCc--cEEEEEcCCCC--eeeeeecceEEEeEeEEeCCC-
Confidence 99988766554332110 002357899999997776654321 22333332222 45566777788777 599886
Q ss_pred ccccccccccccccccccCCcccccCccCCCCcEE-EEEeCCC--cEEEEeCCC-CCceEEecccCCCCeEEEEEccCCC
Q 040062 275 RRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDR--TITVWTTAS-PRPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg--~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
+.| ++++.++ .++||++.. +.....+.. ...+.+++|||||+
T Consensus 392 --------------------------------~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~--~~~~~~~~~spdg~ 437 (741)
T 2ecf_A 392 --------------------------------GLAYFRAGIESARESQIYAVPLQGGQPQRLSK--APGMHSASFARNAS 437 (741)
T ss_dssp --------------------------------TEEEEEECSSCTTCBEEEEEETTCCCCEECCC--SCSEEEEEECTTSS
T ss_pred --------------------------------CEEEEEEeCCCCceEEEEEEEcCCCCeeeccc--CCCceEEEECCCCC
Confidence 444 4555555 899999864 444555443 55688999999999
Q ss_pred eEEEEeCC----CcEEEEEeecc
Q 040062 351 SLFACSLD----GTVANFHFEVK 369 (689)
Q Consensus 351 ~L~sgs~D----G~I~vwd~~~~ 369 (689)
+|+....+ +.+++|+...+
T Consensus 438 ~l~~~~~~~~~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 438 VYVDSWSNNSTPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEETTEEEEEEEEETTSC
T ss_pred EEEEEecCCCCCCeEEEEEcCCC
Confidence 98876543 46888886543
No 142
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=1e-20 Score=219.39 Aligned_cols=297 Identities=11% Similarity=0.041 Sum_probs=200.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|.+++|||| .+++.+. ++.|++||+.+ ++ ...+..+.+.+.+++|+|||++|+++ .|+.|++|+
T Consensus 83 ~v~~~~~spd-~~~~~~~-~~~i~~~d~~~-----------~~-~~~l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~ 147 (706)
T 2z3z_A 83 PSFRTLDAGR-GLVVLFT-QGGLVGFDMLA-----------RK-VTYLFDTNEETASLDFSPVGDRVAYV-RNHNLYIAR 147 (706)
T ss_dssp CCEEEEETTT-TEEEEEE-TTEEEEEETTT-----------TE-EEEEECCTTCCTTCEECTTSSEEEEE-ETTEEEEEE
T ss_pred CceeEEECCC-CeEEEEE-CCEEEEEECCC-----------Cc-eEEccCCcccccCCcCCCCCCEEEEE-ECCeEEEEe
Confidence 6999999999 6666654 49999999986 33 33445577788999999999999995 679999999
Q ss_pred cCC-----CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-------------------------
Q 040062 95 KKP-----GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS------------------------- 144 (689)
Q Consensus 95 l~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs------------------------- 144 (689)
+.+ +........... .+..... ....+...+.+++|||||++|++++
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~-~~~~g~~--~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 224 (706)
T 2z3z_A 148 GGKLGEGMSRAIAVTIDGTE-TLVYGQA--VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLY 224 (706)
T ss_dssp CBCTTSCCCCCEESCSCCBT-TEEESSC--CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEEC
T ss_pred cCcccccCCCcEEeccCCCC-CeEcccc--hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEee
Confidence 987 532211100000 0000000 0011122358999999999999987
Q ss_pred --------CCCeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCcceeeccCcc
Q 040062 145 --------LDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDK-----TVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 145 --------~Dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg-----~I~iwd~~~~~~~~~~~~~~ 209 (689)
.+..|++||+.+++...... .|...+.+++|+|||++|++++.|+ .|++||+.+++....+....
T Consensus 225 y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~ 304 (706)
T 2z3z_A 225 YPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVET 304 (706)
T ss_dssp CCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEE
T ss_pred CCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEcc
Confidence 44689999999887655442 4667899999999999999987775 89999999883333322111
Q ss_pred cccCCcccEEEEEEcC--CCCeEEEecCCCCCccccceeecC-CceeeeeecCCCCCEEE-EEEcCCccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSP--CGHFITTTHGFQKPRHSAPVLERG-EWAATFDFLGHNAPIIV-VKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 210 ~~~~~~~~i~~l~~sp--dg~~l~~~~~~~~~~~~~~i~~~~-~~~~~~~l~~h~~~v~~-v~fsp~~~~~~~~~~~~~~ 285 (689)
.. .....+..+.|+| ||++++++..++ ...+|... .......+..|...+.. +.|+|++
T Consensus 305 ~~-~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg------------ 367 (706)
T 2z3z_A 305 DK-HYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKG------------ 367 (706)
T ss_dssp CS-SCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCCSSSCEEEEEEECTTS------------
T ss_pred CC-CeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCC------------
Confidence 10 0001135679999 999888775432 23444332 23334455667777776 7899886
Q ss_pred cccccccCCcccccCccCCCCcEEE-EEeCCC----cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCC--
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIA-IGSQDR----TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD-- 358 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~la-sgs~Dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-- 358 (689)
+.|+ ++..++ .|+.||+.+++. ..+. +...+.+++|+|||++|+..+.+
T Consensus 368 ---------------------~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~--~~~~~~~~~~spdg~~l~~~~~~~~ 423 (706)
T 2z3z_A 368 ---------------------TRLYFESTEASPLERHFYCIDIKGGKT-KDLT--PESGMHRTQLSPDGSAIIDIFQSPT 423 (706)
T ss_dssp ---------------------SEEEEEESSSCTTCBEEEEEETTCCCC-EESC--CSSSEEEEEECTTSSEEEEEEECSS
T ss_pred ---------------------CEEEEEecCCCCceEEEEEEEcCCCCc-eecc--CCCceEEEEECCCCCEEEEEecCCC
Confidence 4554 444444 677778777653 3332 46679999999999988876443
Q ss_pred --CcEEEEEeeccc
Q 040062 359 --GTVANFHFEVKE 370 (689)
Q Consensus 359 --G~I~vwd~~~~~ 370 (689)
+.|++||+.+++
T Consensus 424 ~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 424 VPRKVTVTNIGKGS 437 (706)
T ss_dssp CSCEEEEEESSSCE
T ss_pred CCcEEEEEECCCCe
Confidence 469999998775
No 143
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=2.7e-20 Score=194.55 Aligned_cols=280 Identities=12% Similarity=0.027 Sum_probs=192.7
Q ss_pred EEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeEE
Q 040062 73 RWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTIH 150 (689)
Q Consensus 73 ~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I~ 150 (689)
.|.++++ .+++++.++.|.+||+.++ +....+..+...+ .++|+|++++|++++. ++.|.
T Consensus 4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~ 65 (331)
T 3u4y_A 4 MFQTTSNFGIVVEQHLRRISFFSTDTL-----------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLV 65 (331)
T ss_dssp ---CCCCEEEEEEGGGTEEEEEETTTC-----------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEE
T ss_pred eEcCCCCEEEEEecCCCeEEEEeCccc-----------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEE
Confidence 4555555 4778888999999999887 4555555566666 9999999997776665 88999
Q ss_pred EEEcCCCeE-EEEEecCCCCeEEEEEccCCCEEEEEeCCC---eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 151 IWNMSTGIC-TAVLRGHSSLVKGVAWDPIGSFIASQSDDK---TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 151 vwd~~~~~~-~~~l~~h~~~V~~l~~spdg~~las~s~Dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
+||+.+++. ...+..+.....+++|+|++++|+++..++ .|.+||+.+++.+..+.... ....++|+|+
T Consensus 66 ~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-------~~~~~~~spd 138 (331)
T 3u4y_A 66 QIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-------DAVGIAISPN 138 (331)
T ss_dssp EEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-------TEEEEEECTT
T ss_pred EEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-------CccceEECCC
Confidence 999999887 777776766666699999999999555553 89999999988877665432 2589999999
Q ss_pred CCeEEEecCCCCCccccceeecCCceee----eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAAT----FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~~----~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
|++++++...... .+.+|+....... .....+......++|+|++
T Consensus 139 g~~l~~~~~~~~~--~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg----------------------------- 187 (331)
T 3u4y_A 139 GNGLILIDRSSAN--TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDG----------------------------- 187 (331)
T ss_dssp SSCEEEEEETTTT--EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTS-----------------------------
T ss_pred CCEEEEEecCCCc--eEEEEEECCCCcEeecCCccccCCCCccceEECCCC-----------------------------
Confidence 9988776543222 1444443321111 1122334557788888876
Q ss_pred CCCCcE-EEEEeCCCcEEEEeCCCCCc---eEEecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEeecccc--cccc
Q 040062 303 SQPYNV-IAIGSQDRTITVWTTASPRP---LFVAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFEVKEL--GHRL 375 (689)
Q Consensus 303 s~~~~~-lasgs~Dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~~~~l--~~~l 375 (689)
++ ++++..++.|++||+.+++. +..+.. ...+..++|+|||++|++++ .++.|.+||++++++ ...+
T Consensus 188 ----~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~ 261 (331)
T 3u4y_A 188 ----NFAFVANLIGNSIGILETQNPENITLLNAVGT--NNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSF 261 (331)
T ss_dssp ----SEEEEEETTTTEEEEEECSSTTSCEEEEEEEC--SSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEE
T ss_pred ----CEEEEEeCCCCeEEEEECCCCcccceeeeccC--CCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeeccc
Confidence 54 45555689999999999888 666553 46788999999999887765 578899999988776 1111
Q ss_pred ChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc-cccceeeeeee
Q 040062 376 SDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS-AKETTTKKVVS 422 (689)
Q Consensus 376 ~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s-~DG~v~~~~~~ 422 (689)
... + ............++|+|||++|+.++ .++++ .++.
T Consensus 262 ~~~----~--~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v--~v~d 301 (331)
T 3u4y_A 262 GHG----L--LIDPRPLFGANQMALNKTETKLFISANISREL--KVFT 301 (331)
T ss_dssp ECC----C--CCCCGGGTTCCCEEECTTSSEEEEEETTTTEE--EEEE
T ss_pred ccc----c--ccCCCCcccccceEECCCCCEEEEecCCCCcE--EEEE
Confidence 000 0 00011111235689999999886555 45577 5554
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=4.8e-20 Score=194.07 Aligned_cols=273 Identities=8% Similarity=0.028 Sum_probs=205.2
Q ss_pred CCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 65 HFGSVNCVRWAKHGRYIASGSD-------DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~-------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
....+..++|+|++++|++++. ++.|.+||..++ +....+.. ...+..++|++++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~-----------------~~~~~~~~-~~~~~~~~~s~dg 100 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTL-----------------EVTQAIHN-DLKPFGATINNTT 100 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTC-----------------CEEEEEEE-SSCCCSEEEETTT
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCC-----------------eEEEEEec-CCCcceEEECCCC
Confidence 3456889999999998888774 568999999887 44444443 3457889999999
Q ss_pred CEEEE-EeCCCeEEEEEcCCCeEEEEEecCCCC---------eEEEEEccCCCEEEEEe--CCCeEEEEECCCCcceeec
Q 040062 138 SILAS-GSLDNTIHIWNMSTGICTAVLRGHSSL---------VKGVAWDPIGSFIASQS--DDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 138 ~~Las-gs~Dg~I~vwd~~~~~~~~~l~~h~~~---------V~~l~~spdg~~las~s--~Dg~I~iwd~~~~~~~~~~ 205 (689)
+++++ ...++.|.+||+.+++.+..+..+... +.+++|+|+++++++++ .++.|.+||..+++....+
T Consensus 101 ~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 101 QTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEE
T ss_pred CEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEe
Confidence 95555 455799999999999998888765432 78899999999877776 4789999999999888776
Q ss_pred cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC----CCCCEEEEEEcCCccccccccc
Q 040062 206 DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG----HNAPIIVVKFNHSMFRRNSASS 281 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~----h~~~v~~v~fsp~~~~~~~~~~ 281 (689)
..... .+..+.|+|+|++++++.. ...+.+|+.........+.. +...+..++|+|++
T Consensus 181 ~~~~~------~~~~~~~s~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-------- 242 (353)
T 3vgz_A 181 QNTGK------MSTGLALDSEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTAR-------- 242 (353)
T ss_dssp CCCCT------TCCCCEEETTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTT--------
T ss_pred cCCCC------ccceEEECCCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCC--------
Confidence 53221 2567899999999998865 23556777766655544432 45567788998886
Q ss_pred cccccccccccCCcccccCccCCCCcEEEEEe-CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe-CCC
Q 040062 282 QEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS-LDG 359 (689)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-~DG 359 (689)
+++++++ .++.|.+||+.+++.+..+.... ...++|+|||++|++++ .++
T Consensus 243 -------------------------~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~s~dg~~l~v~~~~~~ 294 (353)
T 3vgz_A 243 -------------------------QRAFITDSKAAEVLVVDTRNGNILAKVAAPE---SLAVLFNPARNEAYVTHRQAG 294 (353)
T ss_dssp -------------------------TEEEEEESSSSEEEEEETTTCCEEEEEECSS---CCCEEEETTTTEEEEEETTTT
T ss_pred -------------------------CEEEEEeCCCCEEEEEECCCCcEEEEEEcCC---CceEEECCCCCEEEEEECCCC
Confidence 5555554 45999999999998887766432 36799999999776665 689
Q ss_pred cEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 360 TVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 360 ~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
.|.+||..+++....+. ....+..++|+|||++|+.+..++.
T Consensus 295 ~v~~~d~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~v~~~~~~ 336 (353)
T 3vgz_A 295 KVSVIDAKSYKVVKTFD--------------TPTHPNSLALSADGKTLYVSVKQKS 336 (353)
T ss_dssp EEEEEETTTTEEEEEEE--------------CCSEEEEEEECTTSCEEEEEEECCC
T ss_pred eEEEEECCCCeEEEEEe--------------cCCCCCeEEEcCCCCEEEEEEcccc
Confidence 99999998887654331 1225799999999997777665543
No 145
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.87 E-value=1.1e-19 Score=190.06 Aligned_cols=281 Identities=13% Similarity=0.092 Sum_probs=186.3
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCC-CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGD-HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD- 86 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~D-g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~- 86 (689)
+.|. ..+.+++|+|+|++|++++.+ +.|++|++.... ...+.+..+..+. .+.+++|+|+|++|++++.
T Consensus 34 ~~~~-~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~ 104 (343)
T 1ri6_A 34 VDVP-GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------GALTFAAESALPG-SLTHISTDHQGQFVFVGSYN 104 (343)
T ss_dssp EECS-SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEECSS-CCSEEEECTTSSEEEEEETT
T ss_pred EecC-CCCceEEECCCCCEEEEeecCCCeEEEEEecCCC-------CceeeccccccCC-CCcEEEEcCCCCEEEEEecC
Confidence 3455 479999999999999998886 999999997210 1133445555444 7899999999998876664
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-CeEEE---
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMST-GICTA--- 161 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~-~~~~~--- 161 (689)
++.|.+||+..+. .......+.. ...+.+++|+|++++|++++ .++.|.+||+.+ ++...
T Consensus 105 ~~~i~~~d~~~~~--------------~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~ 169 (343)
T 1ri6_A 105 AGNVSVTRLEDGL--------------PVGVVDVVEG-LDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDP 169 (343)
T ss_dssp TTEEEEEEEETTE--------------EEEEEEEECC-CTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEE
T ss_pred CCeEEEEECCCCc--------------cccccccccC-CCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecc
Confidence 8899999995221 0134444443 34689999999999888887 899999999987 65432
Q ss_pred -EEec-CCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCC--Ccc--eeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 162 -VLRG-HSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSD--WSL--AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 162 -~l~~-h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~--~~~--~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
.+.. ....+.+++|+|++++|++++ .++.|.+||++. +.. ...+............+..++|+|+|++|+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~ 249 (343)
T 1ri6_A 170 AEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACD 249 (343)
T ss_dssp EEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEE
T ss_pred cccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEe
Confidence 2232 345788999999999776555 789999999954 332 111111111111233467899999999988765
Q ss_pred CCCCCccccceeecC----CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE
Q 040062 235 GFQKPRHSAPVLERG----EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA 310 (689)
Q Consensus 235 ~~~~~~~~~~i~~~~----~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la 310 (689)
.. ...+.+|+.. .......+..+.. +..++|+|++ ++|+
T Consensus 250 ~~---~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg---------------------------------~~l~ 292 (343)
T 1ri6_A 250 RT---ASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSG---------------------------------KYLI 292 (343)
T ss_dssp TT---TTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTS---------------------------------SEEE
T ss_pred cC---CCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCC---------------------------------CEEE
Confidence 42 2456677655 3333333433333 7778888876 6777
Q ss_pred EEe-CCCcEEEEeCC--CCCceEEecccCCCCeEEEEEccCCC
Q 040062 311 IGS-QDRTITVWTTA--SPRPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 311 sgs-~Dg~I~iwd~~--~~~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
+++ .++.|.+|+++ +++..............+++|.++.+
T Consensus 293 ~~~~~~~~v~v~~~d~~~g~~~~~~~~~~g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 293 AAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMWVVVNAHEG 335 (343)
T ss_dssp EECTTTCEEEEEEEETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred EecCCCCeEEEEEEcCCCceeeEccccccCCCCeeEEEEcccC
Confidence 776 68999999554 55332221111134567778877543
No 146
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.87 E-value=8.3e-21 Score=193.63 Aligned_cols=256 Identities=14% Similarity=0.049 Sum_probs=184.6
Q ss_pred EEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-CeEEE
Q 040062 83 SGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-GICTA 161 (689)
Q Consensus 83 sgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~~~~~ 161 (689)
.++.|+.|++||+.++ + ...+..|...|.+++|+|++++|++++ ++.|++||+.+ ++...
T Consensus 17 ~~~~~~~i~~~d~~~~-----------------~-~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~ 77 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTR-----------------K-MRVVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK 77 (297)
T ss_dssp -CCCCEEEEEEETTTT-----------------E-EEEEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE
T ss_pred CCCcceeEEEEeCCCC-----------------c-eeeeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE
Confidence 3467899999999876 3 335556889999999999999999987 88999999999 88777
Q ss_pred EEecCC-CCeEEEEEccCCCEEEEEe--CCCeEEEE--ECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 162 VLRGHS-SLVKGVAWDPIGSFIASQS--DDKTVIIW--RTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 162 ~l~~h~-~~V~~l~~spdg~~las~s--~Dg~I~iw--d~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
....|. ..+.+++|+|++++|++++ .++...|| ++.++.. ..+... ..+..+.|+|++++|+.....
T Consensus 78 ~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~-------~~~~~~~~spdg~~l~~~~~~ 149 (297)
T 2ojh_A 78 VDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTP-RLMTKN-------LPSYWHGWSPDGKSFTYCGIR 149 (297)
T ss_dssp CCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCC-EECCSS-------SSEEEEEECTTSSEEEEEEEE
T ss_pred eccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCce-EEeecC-------CCccceEECCCCCEEEEEECC
Confidence 666663 6788999999999999998 33444554 5554442 222221 126788999999988854332
Q ss_pred CCCccccceee--cCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-
Q 040062 237 QKPRHSAPVLE--RGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS- 313 (689)
Q Consensus 237 ~~~~~~~~i~~--~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs- 313 (689)
. ..+.+|. .... ....+..|...+..+.|+|++ ++|+.++
T Consensus 150 ~---~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg---------------------------------~~l~~~~~ 192 (297)
T 2ojh_A 150 D---QVFDIYSMDIDSG-VETRLTHGEGRNDGPDYSPDG---------------------------------RWIYFNSS 192 (297)
T ss_dssp T---TEEEEEEEETTTC-CEEECCCSSSCEEEEEECTTS---------------------------------SEEEEEEC
T ss_pred C---CceEEEEEECCCC-cceEcccCCCccccceECCCC---------------------------------CEEEEEec
Confidence 2 2234444 3222 234556778889999999886 6666555
Q ss_pred CCCcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCCeEEEEeCC-----------CcEEEEEeeccccccccChHHHH
Q 040062 314 QDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD-----------GTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 314 ~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----------G~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
.++.++||++. .+..+..+. .|...+.+++|+|+|++|++++.+ +.|++||+++++....
T Consensus 193 ~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~------- 264 (297)
T 2ojh_A 193 RTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETL------- 264 (297)
T ss_dssp TTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEE-------
T ss_pred CCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceee-------
Confidence 58999999986 444554443 456789999999999999988766 5699999987654321
Q ss_pred HHHHhccCCccCceeeeecCchhhhhHhhcccc
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQLLLEAASAKE 414 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG 414 (689)
.....|...+..++|+||+.+|++++.|.
T Consensus 265 ----~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 265 ----FDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ----EEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ----eccCCCCcccccceECCCCCEEEEEEecc
Confidence 11113455789999999999998887654
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=218.91 Aligned_cols=317 Identities=13% Similarity=0.104 Sum_probs=209.1
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC---cEEEEEEcCCCCEEEEEeC-------
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG---SVNCVRWAKHGRYIASGSD------- 86 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~---~V~~v~fspdg~~Lasgs~------- 86 (689)
.++.|+|||+++++ +.|+.|++||+.+ ++....+..|.. .|.+++|||||++|++++.
T Consensus 19 ~~~~~s~dg~~~~~-~~d~~i~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 19 FFPNWISGQEYLHQ-SADNNIVLYNIET-----------GQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCCEESSSSEEEEE-CTTSCEEEEESSS-----------CCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred CccEECCCCeEEEE-cCCCCEEEEEcCC-----------CcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 37899999965554 5689999999986 555555554433 3899999999999999876
Q ss_pred --CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE-
Q 040062 87 --DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL- 163 (689)
Q Consensus 87 --Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l- 163 (689)
|+.|++||+.++..... ..+ ...+..++|||||+.|+++. ++.|++||+.+++.....
T Consensus 87 s~~~~i~~~d~~~g~~~~~---------------~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~ 147 (719)
T 1z68_A 87 SYTATYYIYDLSNGEFVRG---------------NEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITF 147 (719)
T ss_dssp CEEEEEEEEETTTTEECCS---------------SCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCC
T ss_pred ecceEEEEEECCCCccccc---------------eec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEec
Confidence 78999999988721000 111 24588899999999999986 789999999888765433
Q ss_pred ecCCCCe-----------------EEEEEccCCCEEEEEeCCC----------------------------------eEE
Q 040062 164 RGHSSLV-----------------KGVAWDPIGSFIASQSDDK----------------------------------TVI 192 (689)
Q Consensus 164 ~~h~~~V-----------------~~l~~spdg~~las~s~Dg----------------------------------~I~ 192 (689)
.++...| .+++|+|||++|++++.|. .|+
T Consensus 148 ~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~ 227 (719)
T 1z68_A 148 NGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIF 227 (719)
T ss_dssp CCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEE
T ss_pred CCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEE
Confidence 2232222 4899999999999987652 788
Q ss_pred EEECCCCcce--eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee----cCCceeeeee----cCCCC
Q 040062 193 IWRTSDWSLA--HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE----RGEWAATFDF----LGHNA 262 (689)
Q Consensus 193 iwd~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~----~~~~~~~~~l----~~h~~ 262 (689)
+||+.+++.. ..+..+.........+..++|+||++.+++..........+.+++ .........+ .+|..
T Consensus 228 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~ 307 (719)
T 1z68_A 228 IIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG 307 (719)
T ss_dssp EEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS
T ss_pred EEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc
Confidence 9999887653 111111000112345889999999877766433222334566666 4444433333 35555
Q ss_pred CEE-----EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE--EEeCCC--cEEEEeCCCCCceEEec
Q 040062 263 PII-----VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA--IGSQDR--TITVWTTASPRPLFVAK 333 (689)
Q Consensus 263 ~v~-----~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la--sgs~Dg--~I~iwd~~~~~~~~~~~ 333 (689)
.+. .+.|+|++ +.|+ +...++ .|++||+.+++. ..+.
T Consensus 308 ~~~~~~~~~~~~spdg---------------------------------~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt 353 (719)
T 1z68_A 308 WAGGFFVSTPVFSYDA---------------------------------ISYYKIFSDKDGYKHIHYIKDTVENA-IQIT 353 (719)
T ss_dssp CSSSSSCCCCEECTTS---------------------------------SCEEEEEECTTSCEEEEEESSCSTTC-EECS
T ss_pred eEccccCCccEECCCC---------------------------------CeEEEEEEccCCceEEEEEECCCCce-Eecc
Confidence 555 66777775 4333 344555 577778877663 3333
Q ss_pred ccCCCCeEEEEEccCCCeEEEEeCC-----CcEEEEEeec--ccc-ccccChHHHHHHHHhccCCccCceeeeecCchhh
Q 040062 334 HFFTQSVVDLSWSPDGYSLFACSLD-----GTVANFHFEV--KEL-GHRLSDAELDELKRSRYGDVRGRLANLAETPAQL 405 (689)
Q Consensus 334 ~~h~~~V~~l~~spdg~~L~sgs~D-----G~I~vwd~~~--~~l-~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~ 405 (689)
.+...+..+.++ +++.|+..+.+ +.+++|.+.. +.. ...+. .....+...+..+.||||+.
T Consensus 354 -~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~---------~~~~~~~~~~~~~~~s~dg~ 422 (719)
T 1z68_A 354 -SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT---------CHLRKERCQYYTASFSDYAK 422 (719)
T ss_dssp -CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS---------TTTTTTTBCBEEEEECGGGS
T ss_pred -cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc---------CccCCCCCceEEEEECCCCC
Confidence 234557787777 88887776655 8899999875 211 11111 11112344578899999998
Q ss_pred hhHh
Q 040062 406 LLEA 409 (689)
Q Consensus 406 ~Las 409 (689)
+|+.
T Consensus 423 ~l~~ 426 (719)
T 1z68_A 423 YYAL 426 (719)
T ss_dssp SEEE
T ss_pred EEEE
Confidence 8874
No 148
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.86 E-value=4.8e-20 Score=193.54 Aligned_cols=285 Identities=8% Similarity=-0.044 Sum_probs=191.5
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-CcEEEEEEcCCCCEEE-EEeCCCeEEEEEc
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-GSVNCVRWAKHGRYIA-SGSDDQVILIHEK 95 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fspdg~~La-sgs~Dg~I~iwdl 95 (689)
.+++++++.++++++.++.|++||..+ ++.+..+..+. ..+..++|+|+|++++ ++..++.|.+||+
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVAS-----------DTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTT-----------TEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCC-----------CcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 457888999999999999999999986 66666665443 2577899999998654 5567899999999
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecC------CCCEEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCC
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGH------TADVVDLNWSPDDSILASGSLD------------NTIHIWNMSTG 157 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~l~~spdg~~Lasgs~D------------g~I~vwd~~~~ 157 (689)
.++ +....+..+ ...+..++|+||+++|++++.+ +.|.+||+.++
T Consensus 73 ~t~-----------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 135 (349)
T 1jmx_B 73 DTC-----------------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADG 135 (349)
T ss_dssp TTT-----------------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGG
T ss_pred CCC-----------------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCc
Confidence 877 444444422 2337889999999999998865 89999999874
Q ss_pred e---EEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccC------------------Ccc
Q 040062 158 I---CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSL------------------GST 216 (689)
Q Consensus 158 ~---~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~------------------~~~ 216 (689)
+ .+..+. +...+.+++|+|+|+ +++++. .|.+||+.+++....+........ ...
T Consensus 136 ~~~~~~~~~~-~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (349)
T 1jmx_B 136 LEAKPVRTFP-MPRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFS 211 (349)
T ss_dssp GGBCCSEEEE-CCSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEE
T ss_pred cccceeeecc-CCCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEE
Confidence 3 334444 344688999999999 555544 499999999887766543310000 000
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCc-eeeeeecCCCCCEEEEEEcC-CccccccccccccccccccccCC
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEW-AATFDFLGHNAPIIVVKFNH-SMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~h~~~v~~v~fsp-~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
....+.+++++........ .......++.... ...+.+..+...+..++|+| ++
T Consensus 212 ~~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg--------------------- 267 (349)
T 1jmx_B 212 MLYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP--------------------- 267 (349)
T ss_dssp EEEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCT---------------------
T ss_pred eeeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccCCCcceeeEecCCCC---------------------
Confidence 2344556555422110000 0000000111111 11122223455677777877 65
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
++++++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+++++....
T Consensus 268 ------------~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~ 331 (349)
T 1jmx_B 268 ------------NQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 331 (349)
T ss_dssp ------------TEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred ------------CEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEECCCCCEEEEecCCCeEEEEeccccceeee
Confidence 677777 88999999999887776654 34578999999999999999999999999988776543
No 149
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.86 E-value=8.8e-20 Score=198.86 Aligned_cols=213 Identities=13% Similarity=0.110 Sum_probs=158.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCc-----ccceeeeeecCCCCcEEEEEEcCCCCEEE----EE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDE-----STQRLLATLRDHFGSVNCVRWAKHGRYIA----SG 84 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~-----~~~~~~~~l~~h~~~V~~v~fspdg~~La----sg 84 (689)
..++.+++++++.+|++++.|+ |+||+............ ........ ..|.+.|++++|+|+|++|+ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~l~~spdg~~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLL-VPMKFPIHHLALSCDNLTLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEE-ECCSSCEEEEEECTTSCEEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCcccc-ccCCCcccEEEEcCCCCEEEEEEecc
Confidence 3589999999999999999987 99998754211100000 00011112 23677899999999999999 78
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
+.|+.|+|||+.+.... .......+.....+.+|...|.+++|+|+ +.+|++++.|++|++||++++..+...
T Consensus 115 s~d~~v~iwd~~~~~~~------~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~ 188 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNE------AKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCAT 188 (434)
T ss_dssp TTEEEEEEEEHHHHHCT------TCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEE
T ss_pred CCCceEEEEEccccccC------CcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeec
Confidence 89999999998754100 00000112345667789999999999998 789999999999999999999887777
Q ss_pred ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccccc-CCcccEEEEEEcCCCCeEEEecC
Q 040062 164 RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKS-LGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 164 ~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+|...|.+++|+|+|++|++++.||+|++||++ ++....+..+.... .....+.++.|++++.++++...
T Consensus 189 ~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 189 LPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp ECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred cCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence 7899999999999999999999999999999998 55555444432211 11235899999999988866543
No 150
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=3e-19 Score=188.23 Aligned_cols=280 Identities=10% Similarity=0.063 Sum_probs=182.6
Q ss_pred EEEEEe----CCCeEEEEeCCcCCCCCCCCcccceeee-eecCCCCcEEEEEEcCCCCEEEEEeC---CCeEEEEEcCCC
Q 040062 27 RFATGG----GDHKVRIWNMKSVGKNFENDESTQRLLA-TLRDHFGSVNCVRWAKHGRYIASGSD---DQVILIHEKKPG 98 (689)
Q Consensus 27 ~Latgs----~Dg~V~IWd~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~v~fspdg~~Lasgs~---Dg~I~iwdl~~~ 98 (689)
+|++|+ .++.|.+|+++.. .++... ....+...+..++|+|+|+ |++++. ++.|.+|++.++
T Consensus 4 ~~~vg~y~~~~~~~i~v~~~d~~---------tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g 73 (347)
T 3hfq_A 4 RILFGTYTKKTSQGIYQGTLDTT---------AKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ 73 (347)
T ss_dssp EEEEEECCSSSCCEEEEEEEETT---------TTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT
T ss_pred EEEEEeccCCCCCCEEEEEEcCC---------CCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCC
Confidence 455553 3467888887641 122211 2233556778899999999 555544 689999999765
Q ss_pred CCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCC-C--eEEEEEec---------
Q 040062 99 SGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMST-G--ICTAVLRG--------- 165 (689)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~-~--~~~~~l~~--------- 165 (689)
. ++.+..+..+...+..++|+||+++|++++ .++.|.+|++.. + ..+..+..
T Consensus 74 ~---------------~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~ 138 (347)
T 3hfq_A 74 T---------------AHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQ 138 (347)
T ss_dssp E---------------EEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTC
T ss_pred c---------------EEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccc
Confidence 2 134555556778899999999999888888 778999999963 3 33333332
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
+...+.+++|+|+|+++++...++.|++|++. +++......... ........++|+|||++++++.... ..+.
T Consensus 139 ~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~---~~g~~p~~~~~spdg~~l~v~~~~~---~~v~ 212 (347)
T 3hfq_A 139 DGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM---EAGFGPRHLVFSPDGQYAFLAGELS---SQIA 212 (347)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC---CTTCCEEEEEECTTSSEEEEEETTT---TEEE
T ss_pred cCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc---CCCCCCceEEECCCCCEEEEEeCCC---CEEE
Confidence 12348899999999966666678899999998 444332211110 1112367899999999888765433 2344
Q ss_pred eeecC----CceeeeeecCCC------CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEE-EEEe
Q 040062 245 VLERG----EWAATFDFLGHN------APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGS 313 (689)
Q Consensus 245 i~~~~----~~~~~~~l~~h~------~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs 313 (689)
+|+.. .......+.... ..+..++|+|++ ++| ++..
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG---------------------------------~~l~v~~~ 259 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDG---------------------------------HFLYVSNR 259 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTS---------------------------------CEEEEEEE
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCC---------------------------------CEEEEEeC
Confidence 44432 221222222211 346778888876 655 5666
Q ss_pred CCCcEEEEeCCCC---CceEEecccCCCCeEEEEEccCCCeEEEEeCC-CcEEEEEee--cccc
Q 040062 314 QDRTITVWTTASP---RPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD-GTVANFHFE--VKEL 371 (689)
Q Consensus 314 ~Dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-G~I~vwd~~--~~~l 371 (689)
.++.|.+|++... +.+..+. .+...+.+++|+|||++|++++.+ +.|.+|+++ ++++
T Consensus 260 ~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 260 GYNTLAVFAVTADGHLTLIQQIS-TEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp TTTEEEEEEECGGGCEEEEEEEE-CSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred CCCEEEEEEECCCCcEEEeEEEe-cCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 7899999999733 2233332 235568999999999999888764 899999664 4444
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.85 E-value=2.4e-20 Score=216.86 Aligned_cols=282 Identities=9% Similarity=0.019 Sum_probs=189.7
Q ss_pred eEEEEEEcCCCCEEEEEeCC---------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 15 QIFSIDVQPGALRFATGGGD---------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~D---------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
.|.+++|||||++|++++.+ +.|++||+.+.. .+.+.....|...+.+++|||||++||+++
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~SPdG~~la~~~ 132 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSNAKLQYAGWGPKGQQLIFIF 132 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC---------CEECCCTTCCSCCCSBCCBCSSTTCEEEEE
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc---------eEeccCCccccccccccEECCCCCEEEEEE
Confidence 39999999999999999764 788899998611 122333345556689999999999999988
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCC------------------CEEEEEEcCCCCEEEEEeCCC
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTA------------------DVVDLNWSPDDSILASGSLDN 147 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~------------------~V~~l~~spdg~~Lasgs~Dg 147 (689)
. +.|++|++.++. .......+.. .+.+++|||||++|++++.|+
T Consensus 133 ~-~~i~~~~~~~g~-----------------~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~ 194 (723)
T 1xfd_A 133 E-NNIYYCAHVGKQ-----------------AIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND 194 (723)
T ss_dssp T-TEEEEESSSSSC-----------------CEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC
T ss_pred C-CeEEEEECCCCc-----------------eEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC
Confidence 6 799999998763 2222233222 237899999999999987653
Q ss_pred ----------------------------------eEEEEEcCCCeEEEEEecC------CCCeEEEEEccCCCEEEEEeC
Q 040062 148 ----------------------------------TIHIWNMSTGICTAVLRGH------SSLVKGVAWDPIGSFIASQSD 187 (689)
Q Consensus 148 ----------------------------------~I~vwd~~~~~~~~~l~~h------~~~V~~l~~spdg~~las~s~ 187 (689)
.|++||+.+++....+..+ ...+..++|+|||++|++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~ 274 (723)
T 1xfd_A 195 SRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLN 274 (723)
T ss_dssp TTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEE
T ss_pred CccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEc
Confidence 7999999988765666554 567899999999998877653
Q ss_pred ----CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe-cCCCC---Cccccceee-cCCce--eeee
Q 040062 188 ----DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT-HGFQK---PRHSAPVLE-RGEWA--ATFD 256 (689)
Q Consensus 188 ----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~-~~~~~---~~~~~~i~~-~~~~~--~~~~ 256 (689)
+..|++||+.+++....+......... .....+.|+|||+.|+.. +.... ....+.+++ ..... ....
T Consensus 275 ~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~ 353 (723)
T 1xfd_A 275 RAQNVSILTLCDATTGVCTKKHEDESEAWLH-RQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQS 353 (723)
T ss_dssp TTSCEEEEEEEETTTCCEEEEEEEECSSCCC-CCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCB
T ss_pred CCCCeEEEEEEeCCCCcceEEEEeccCCEEe-ccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeE
Confidence 357999999988766554322111000 001367999999988865 32222 122344555 22222 0223
Q ss_pred ecCCCCCEEE-EEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC---CcEEEEeCCCCC--ceE
Q 040062 257 FLGHNAPIIV-VKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD---RTITVWTTASPR--PLF 330 (689)
Q Consensus 257 l~~h~~~v~~-v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~~--~~~ 330 (689)
+..+...+.. ++|+|++ +.|+..+.+ +.++||++.... ...
T Consensus 354 l~~~~~~~~~~~~~spdg---------------------------------~~l~~~~~~~~~~~~~l~~~~~~~~~~~~ 400 (723)
T 1xfd_A 354 ITSGDWDVTKILAYDEKG---------------------------------NKIYFLSTEDLPRRRQLYSANTVGNFNRQ 400 (723)
T ss_dssp SCCSSSCEEEEEEEETTT---------------------------------TEEEEEESSSCTTCCEEEEECSSTTCCCB
T ss_pred eecCCeEEEeeeEEcCCC---------------------------------CEEEEEEcCCCCcceEEEEEeCCCCCCcc
Confidence 3333344443 6888886 666655544 789999986532 222
Q ss_pred Eeccc--CCCCeEEEEEccCCCeEEEEeC
Q 040062 331 VAKHF--FTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 331 ~~~~~--h~~~V~~l~~spdg~~L~sgs~ 357 (689)
.+... |...+..++|+|||++|+....
T Consensus 401 ~l~~~~~~~~~~~~~~~spdg~~l~~~~~ 429 (723)
T 1xfd_A 401 CLSCDLVENCTYFSASFSHSMDFFLLKCE 429 (723)
T ss_dssp CSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred eecccccCCCCeEEEEECCCCCEEEEEcc
Confidence 23221 4667899999999998887543
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=4.9e-20 Score=208.89 Aligned_cols=270 Identities=10% Similarity=0.030 Sum_probs=191.8
Q ss_pred ceEEEEEEcCCCCEEEEEeC-CCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-CcEEEEEEcCCCCEEEEEeC---CC
Q 040062 14 MQIFSIDVQPGALRFATGGG-DHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-GSVNCVRWAKHGRYIASGSD---DQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~-Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~---Dg 88 (689)
.+|+++.|+|||++||+++. ||.++||++.. ++ ...+..|. ..+.+++|+|| +++++++. +.
T Consensus 22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~-----------g~-~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~ 88 (582)
T 3o4h_A 22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDG-----------GE-TVKLNREPINSVLDPHYGVG-RVILVRDVSKGAE 88 (582)
T ss_dssp SCEEEEEEEETTTEEEEEEEETTEEEEEEEET-----------TE-EEECCSSCCSEECEECTTCS-EEEEEEECSTTSC
T ss_pred cchheeecCCCCCeEEEEEccCCceeEEEEcC-----------CC-cEeeecccccccccccCCCC-eEEEEeccCCCCc
Confidence 58999999999999999887 99999999854 33 34455555 68999999999 77777765 45
Q ss_pred eEEEEEcCC--CCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 89 VILIHEKKP--GSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 89 ~I~iwdl~~--~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
...||.++. ... .. .+..+ ..+...+|+||++ .+++.+.++.+.+||+.+++.......
T Consensus 89 ~~~l~~~~~~~~g~----------------~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~ 150 (582)
T 3o4h_A 89 QHALFKVNTSRPGE----------------EQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARL 150 (582)
T ss_dssp CEEEEEEETTSTTC----------------CE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEE
T ss_pred ceEEEEEeccCCCc----------------cc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecC
Confidence 667776654 211 11 22222 2344668888886 333444445566999999877666554
Q ss_pred CCCCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDD----KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH 241 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~ 241 (689)
+. .+++|+|||++|++++.| +.|++||+.+++... +..+. ..+..++|||||+.|+++...+ ..
T Consensus 151 ~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~-l~~~~------~~~~~~~~SpDG~~l~~~~~~~--~~ 218 (582)
T 3o4h_A 151 PG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV-FDSGE------GSFSSASISPGMKVTAGLETAR--EA 218 (582)
T ss_dssp SS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE-ECCSS------CEEEEEEECTTSCEEEEEECSS--CE
T ss_pred CC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE-eecCC------CccccceECCCCCEEEEccCCC--ee
Confidence 43 789999999999988877 789999998877653 33332 2378999999999999544322 24
Q ss_pred ccceeecCCceeeeeecCCCCCEEEEE--------EcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 242 SAPVLERGEWAATFDFLGHNAPIIVVK--------FNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 242 ~~~i~~~~~~~~~~~l~~h~~~v~~v~--------fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
.+.+|+....... .+.+|...+..+. |+|++ .++++++
T Consensus 219 ~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg---------------------------------~~~~~~~ 264 (582)
T 3o4h_A 219 RLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDG---------------------------------RLAVVAR 264 (582)
T ss_dssp EEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTS---------------------------------CEEEEEE
T ss_pred EEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCC---------------------------------cEEEEEE
Confidence 5677776665555 5556666555555 77665 7899999
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCc---EEEEEee
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGT---VANFHFE 367 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~---I~vwd~~ 367 (689)
.|+.+++|++ ++... .....+.+++|+ |++++++++.+.. +++|+..
T Consensus 265 ~~g~~~l~~~--g~~~~----~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 265 REGRSAVFID--GERVE----APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp ETTEEEEEET--TEEEC----CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEETTC
T ss_pred cCCcEEEEEE--CCeec----cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEcCC
Confidence 9999999999 54433 234678999999 9999998887754 5555543
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=2.2e-18 Score=182.74 Aligned_cols=290 Identities=8% Similarity=0.050 Sum_probs=187.4
Q ss_pred EcCCCCEEEEEeC----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEE
Q 040062 21 VQPGALRFATGGG----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD----QVILI 92 (689)
Q Consensus 21 ~spdg~~Latgs~----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D----g~I~i 92 (689)
..+...++++|+. ++.|++|++.... ...+.+..+ +...+..++|+|+|++|++++.+ +.|.+
T Consensus 9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~-------g~~~~~~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~ 79 (361)
T 3scy_A 9 TTDSELTMLVGTYTSGNSKGIYTFRFNEET-------GESLPLSDA--EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA 79 (361)
T ss_dssp GGGGEEEEEEEECCSSSCCEEEEEEEETTT-------CCEEEEEEE--ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred hCCCceEEEEEeccCCCCCCEEEEEEeCCC-------CCEEEeecc--cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence 3444556777753 5789999886411 112333333 66778889999999999999886 79999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEE----E--e-
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAV----L--R- 164 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~----l--~- 164 (689)
|+++.... ..+.+.....+......+++ ++++|++++ .++.|.+|++.....+.. + .
T Consensus 80 ~~~~~~~g-------------~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g 144 (361)
T 3scy_A 80 FAFDKEKG-------------TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKG 144 (361)
T ss_dssp EEEETTTT-------------EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCC
T ss_pred EEEeCCCC-------------cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccC
Confidence 99876311 11344455556677888888 788777776 578999999975432211 1 1
Q ss_pred -------cCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcc------eeec-cCcccccCCcccEEEEEEcCCCCe
Q 040062 165 -------GHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSL------AHRT-DGHWAKSLGSTFFRRLGWSPCGHF 229 (689)
Q Consensus 165 -------~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~------~~~~-~~~~~~~~~~~~i~~l~~spdg~~ 229 (689)
.+...+.+++|+|+|++|++++ .++.|.+|++..... +... .............+.++|+|+|++
T Consensus 145 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~ 224 (361)
T 3scy_A 145 SGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF 224 (361)
T ss_dssp CCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred CCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence 1233468899999999776665 478999999875432 1100 000000011223678999999999
Q ss_pred EEEecCCCCCccccceeecCCc--eeeee---ecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 230 ITTTHGFQKPRHSAPVLERGEW--AATFD---FLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~--~~~~~---l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
+++++... ..+.+|+.... ..... ...+......++|+|++
T Consensus 225 l~v~~~~~---~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg------------------------------- 270 (361)
T 3scy_A 225 AYLINEIG---GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDG------------------------------- 270 (361)
T ss_dssp EEEEETTT---CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTS-------------------------------
T ss_pred EEEEcCCC---CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCC-------------------------------
Confidence 88876432 34556654322 22222 22333456788888886
Q ss_pred CCcEEEEEeCC--CcEEEEeCC--CCCc--eEEecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEee--ccccc
Q 040062 305 PYNVIAIGSQD--RTITVWTTA--SPRP--LFVAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFE--VKELG 372 (689)
Q Consensus 305 ~~~~lasgs~D--g~I~iwd~~--~~~~--~~~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~--~~~l~ 372 (689)
++|+++..+ +.|.+|++. +++. +..+.. ...+.+++|+|||++|++++ .++.|.+|+++ ++++.
T Consensus 271 --~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~--g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~ 343 (361)
T 3scy_A 271 --KYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT--GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLT 343 (361)
T ss_dssp --SEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC--SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred --CEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC--CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEe
Confidence 677666654 899999996 3442 222222 45688999999999998887 67899998765 45543
No 154
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.83 E-value=4.2e-19 Score=185.22 Aligned_cols=274 Identities=10% Similarity=0.044 Sum_probs=190.4
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-C-CEEEEEEcCCCCEEE-EEeCCCeEEEEEcC
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-A-DVVDLNWSPDDSILA-SGSLDNTIHIWNMS 155 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~-~V~~l~~spdg~~La-sgs~Dg~I~vwd~~ 155 (689)
++|++++.++.|.+||+.++ +....+.... . .+..++|+|++++|+ ++..++.|.+||+.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~ 64 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-----------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV 64 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-----------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred cEEEEcCCCCeEEEEECCCC-----------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence 47899999999999999877 5555555322 2 588999999998664 55567899999999
Q ss_pred CCeEEEEEecC-----CCCeEEEEEccCCCEEEEEe------------CCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 156 TGICTAVLRGH-----SSLVKGVAWDPIGSFIASQS------------DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 156 ~~~~~~~l~~h-----~~~V~~l~~spdg~~las~s------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
+++.+..+... ...+.+++|+|++++|++++ .++.|.+||+.+++....+.... .+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-------~~ 137 (337)
T 1pby_B 65 TGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-------QI 137 (337)
T ss_dssp TCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-------SC
T ss_pred CCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-------Cc
Confidence 99988777632 12567899999999998886 57999999999888776655321 25
Q ss_pred EEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC--CCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 219 RRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN--APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~--~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
..++|+|+|++|+++. ..+.+|+.........+..+. .++ .|+|++..++.........
T Consensus 138 ~~~~~s~dg~~l~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~---------- 198 (337)
T 1pby_B 138 TMLAWARDGSKLYGLG------RDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVM---------- 198 (337)
T ss_dssp CCEEECTTSSCEEEES------SSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEE----------
T ss_pred ceeEECCCCCEEEEeC------CeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCce----------
Confidence 6788999999888872 356777776655544443322 222 5666653222111000000
Q ss_pred cccCccCCCCcEEEEEeCCC----------cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 297 KIGGKESQPYNVIAIGSQDR----------TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg----------~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.........++ .|.+||+.+++........+...+.+++|+|||++|+++ ++.|++||+
T Consensus 199 ---------~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~ 267 (337)
T 1pby_B 199 ---------ATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDL 267 (337)
T ss_dssp ---------EEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEET
T ss_pred ---------eeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEEC
Confidence 00111222222 689999999887533333455678899999999999988 799999999
Q ss_pred eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 367 EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 367 ~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
.+++....+. ....+.+++|+|||++|++++.++.| .++.
T Consensus 268 ~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~i--~v~d 307 (337)
T 1pby_B 268 EKNASIKRVP--------------LPHSYYSVNVSTDGSTVWLGGALGDL--AAYD 307 (337)
T ss_dssp TTTEEEEEEE--------------CSSCCCEEEECTTSCEEEEESBSSEE--EEEE
T ss_pred CCCcCcceec--------------CCCceeeEEECCCCCEEEEEcCCCcE--EEEE
Confidence 8877654321 11247899999999998888888888 4443
No 155
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=5.2e-18 Score=178.65 Aligned_cols=261 Identities=10% Similarity=0.078 Sum_probs=175.6
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeC---CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGG---DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~---Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
..|. ..+..++|+|||+ |++++. ++.|++|++.. ...+.+..+..+...+..++|+|+|++|++++
T Consensus 36 ~~~~-~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~---------g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~ 104 (347)
T 3hfq_A 36 LAAT-QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDG---------QTAHKLNTVVAPGTPPAYVAVDEARQLVYSAN 104 (347)
T ss_dssp EEEC-SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEET---------TEEEEEEEEEEESCCCSEEEEETTTTEEEEEE
T ss_pred eecc-CCcceEEEccCCe-EEEEEecCCCceEEEEEecC---------CcEEEeeeeecCCCCCEEEEECCCCCEEEEEe
Confidence 3444 4678899999999 555543 68999999964 11345555556777889999999999988887
Q ss_pred -CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec---------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 86 -DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG---------HTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 86 -~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
.++.|.+|++...... ..+..+.. +...+.+++|+||++++++...++.|.+||+.
T Consensus 105 ~~~~~v~v~~~~~~g~~--------------~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~ 170 (347)
T 3hfq_A 105 YHKGTAEVMKIAADGAL--------------TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS 170 (347)
T ss_dssp TTTTEEEEEEECTTSCE--------------EEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC
T ss_pred CCCCEEEEEEeCCCCCe--------------eecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC
Confidence 6899999999643111 22233321 22358899999999966666678899999998
Q ss_pred -CCeEEE--EEecC-CCCeEEEEEccCCCEEEE-EeCCCeEEEEECCC--Ccce--eeccCcccccCCcccEEEEEEcCC
Q 040062 156 -TGICTA--VLRGH-SSLVKGVAWDPIGSFIAS-QSDDKTVIIWRTSD--WSLA--HRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 156 -~~~~~~--~l~~h-~~~V~~l~~spdg~~las-~s~Dg~I~iwd~~~--~~~~--~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
+++... .+..+ ...+..++|+|+|++|++ ...++.|.+|+++. ++.. ..+............+..++|+||
T Consensus 171 ~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spd 250 (347)
T 3hfq_A 171 DAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHD 250 (347)
T ss_dssp TTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTT
T ss_pred CCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCC
Confidence 454332 22322 346788999999996666 45688999999874 4322 122111111111245788999999
Q ss_pred CCeEEEecCCCCCccccceeecC---CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 227 GHFITTTHGFQKPRHSAPVLERG---EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~---~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
|++|+++... ...+.+|+.. .......+..+...+..++|+|++
T Consensus 251 G~~l~v~~~~---~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg------------------------------ 297 (347)
T 3hfq_A 251 GHFLYVSNRG---YNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTE------------------------------ 297 (347)
T ss_dssp SCEEEEEEET---TTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTS------------------------------
T ss_pred CCEEEEEeCC---CCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCC------------------------------
Confidence 9998766542 2345566644 334444555556667888898886
Q ss_pred CCCcEEEEEeCC-CcEEEE--eCCCCCceE
Q 040062 304 QPYNVIAIGSQD-RTITVW--TTASPRPLF 330 (689)
Q Consensus 304 ~~~~~lasgs~D-g~I~iw--d~~~~~~~~ 330 (689)
++|++++.+ +.|.+| |..+++...
T Consensus 298 ---~~l~v~~~~~~~v~v~~~d~~tg~l~~ 324 (347)
T 3hfq_A 298 ---AFVVVVNQNTDNATLYARDLTSGKLSL 324 (347)
T ss_dssp ---SEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred ---CEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence 777777764 899999 545565543
No 156
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=4.1e-18 Score=185.67 Aligned_cols=168 Identities=15% Similarity=0.174 Sum_probs=132.7
Q ss_pred ceEEEEEEcCCCCEEE----EEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC-CCEEEEEeCCC
Q 040062 14 MQIFSIDVQPGALRFA----TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH-GRYIASGSDDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~La----tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd-g~~Lasgs~Dg 88 (689)
..|++++|+|+|++|+ +|+.|+.|+|||+................+..+.+|...|.+++|+|+ +.+|++++.||
T Consensus 93 ~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg 172 (434)
T 2oit_A 93 FPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADG 172 (434)
T ss_dssp SCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTS
T ss_pred CcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCC
Confidence 4799999999999999 788899999999875200000000011235667789999999999997 89999999999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS- 167 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~- 167 (689)
+|++||++++ .......+|...|.+++|+|++++|++|+.|+.|++||++ ++....+..|.
T Consensus 173 ~v~iwD~~~~-----------------~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~ 234 (434)
T 2oit_A 173 SIAVLQVTET-----------------VKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPF 234 (434)
T ss_dssp CEEEEEESSS-----------------EEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTT
T ss_pred eEEEEEcCCC-----------------cceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcc
Confidence 9999999876 4555667799999999999999999999999999999998 66666665443
Q ss_pred ------CCeEEEEEccCCCEEEEE-eCCC------eEEEEECCCC
Q 040062 168 ------SLVKGVAWDPIGSFIASQ-SDDK------TVIIWRTSDW 199 (689)
Q Consensus 168 ------~~V~~l~~spdg~~las~-s~Dg------~I~iwd~~~~ 199 (689)
..|.+++|++++.++++. ..|| .+++|+++..
T Consensus 235 ~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 235 YESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp CCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred cCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 379999999988877553 3443 3899999864
No 157
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.5e-19 Score=204.76 Aligned_cols=266 Identities=12% Similarity=0.035 Sum_probs=193.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEE
Q 040062 66 FGSVNCVRWAKHGRYIASGSD-DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASG 143 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasg 143 (689)
...|++++|+|||++||+++. ||++.||+++.+ ....+..|. ..+..++|+|| ++++++
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g------------------~~~~lt~~~~~~~~~~~~spd-~~l~~~ 81 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG------------------ETVKLNREPINSVLDPHYGVG-RVILVR 81 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT------------------EEEECCSSCCSEECEECTTCS-EEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC------------------CcEeeecccccccccccCCCC-eEEEEe
Confidence 557999999999999999887 999999998654 334444555 68999999999 777777
Q ss_pred eC---CCeEEEEEcCC---CeEEEEEecCCCCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 144 SL---DNTIHIWNMST---GICTAVLRGHSSLVKGVAWDPIGSF-IASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 144 s~---Dg~I~vwd~~~---~~~~~~l~~h~~~V~~l~~spdg~~-las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
+. +....+|.+.. +... .+..+ ..+...+|+|+++. +++.+.++.+.+||+.+++.......+
T Consensus 82 ~~~~g~~~~~l~~~~~~~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~-------- 151 (582)
T 3o4h_A 82 DVSKGAEQHALFKVNTSRPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLP-------- 151 (582)
T ss_dssp ECSTTSCCEEEEEEETTSTTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEES--------
T ss_pred ccCCCCcceEEEEEeccCCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCC--------
Confidence 65 45555654432 2222 33322 23456788888853 333344445669999888765544322
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTS 296 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (689)
...+.|||||++|+.+..+......+.+++....... .+..|.+.+..++|+|++
T Consensus 152 -~~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG----------------------- 206 (582)
T 3o4h_A 152 -GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGM----------------------- 206 (582)
T ss_dssp -SCEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTS-----------------------
T ss_pred -CceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCC-----------------------
Confidence 1578899999999977655443355778876554433 567888889999999987
Q ss_pred cccCccCCCCcEEEEEeCCC--cEEEEeCCCCCceEEecccCCCCeEEEE--------EccCCCeEEEEeCCCcEEEEEe
Q 040062 297 KIGGKESQPYNVIAIGSQDR--TITVWTTASPRPLFVAKHFFTQSVVDLS--------WSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 297 ~~~~~~s~~~~~lasgs~Dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~--------~spdg~~L~sgs~DG~I~vwd~ 366 (689)
+.|+++..++ .|++||+.+++.. . ...|...+..++ |+|||.++++++.||.+++|++
T Consensus 207 ----------~~l~~~~~~~~~~i~~~d~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 207 ----------KVTAGLETAREARLVTVDPRDGSVE-D-LELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp ----------CEEEEEECSSCEEEEEECTTTCCEE-E-CCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred ----------CEEEEccCCCeeEEEEEcCCCCcEE-E-ccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 7888888888 8999999988876 3 344566666666 9999988899999999999999
Q ss_pred eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 367 EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 367 ~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
++... ...+.+.+++|+ |+.++++++.+.+-
T Consensus 275 --g~~~~----------------~~~~~v~~~~~s-dg~~l~~~s~~~~p 305 (582)
T 3o4h_A 275 --GERVE----------------APQGNHGRVVLW-RGKLVTSHTSLSTP 305 (582)
T ss_dssp --TEEEC----------------CCSSEEEEEEEE-TTEEEEEEEETTEE
T ss_pred --CCeec----------------cCCCceEEEEec-CCEEEEEEcCCCCC
Confidence 44332 112358899999 99999988877664
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.81 E-value=6.9e-19 Score=205.28 Aligned_cols=320 Identities=13% Similarity=0.109 Sum_probs=200.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc-----EEEEEEcCCCCEEEEEeCC--
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS-----VNCVRWAKHGRYIASGSDD-- 87 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~v~fspdg~~Lasgs~D-- 87 (689)
...++.|+|||++|+++ |+.|++||+.+ ++....+.+|... ...+.|||||++|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~ 84 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEY-----------GNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK 84 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTT-----------CCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCC-----------CceEEEEechhhhhhcccccceEECCCCCEEEEEECCee
Confidence 46789999999999886 89999999987 4555556666532 3447899999999999876
Q ss_pred -------CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE
Q 040062 88 -------QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT 160 (689)
Q Consensus 88 -------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~ 160 (689)
+.+.+||+.++ ....+..|...+...+|||||+.||.+. |+.|++||+.+++..
T Consensus 85 ~~r~~~~~~~~~~d~~~~------------------~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~ 145 (740)
T 4a5s_A 85 QWRHSYTASYDIYDLNKR------------------QLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSY 145 (740)
T ss_dssp CSSSCEEEEEEEEETTTT------------------EECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCE
T ss_pred eEEEccceEEEEEECCCC------------------cEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceE
Confidence 56679999987 2334556778899999999999999885 789999999887755
Q ss_pred EEE-ecCCCCe-----------------EEEEEccCCCEEEEEeCCC---------------------------------
Q 040062 161 AVL-RGHSSLV-----------------KGVAWDPIGSFIASQSDDK--------------------------------- 189 (689)
Q Consensus 161 ~~l-~~h~~~V-----------------~~l~~spdg~~las~s~Dg--------------------------------- 189 (689)
... .++...+ ..+.|+|||++|+..+.|.
T Consensus 146 ~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~ 225 (740)
T 4a5s_A 146 RITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVN 225 (740)
T ss_dssp ECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCC
T ss_pred EEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcC
Confidence 422 2222222 3589999999999875322
Q ss_pred ---eEEEEECCC---Cc--ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce----ee--e
Q 040062 190 ---TVIIWRTSD---WS--LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA----AT--F 255 (689)
Q Consensus 190 ---~I~iwd~~~---~~--~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~----~~--~ 255 (689)
+|++||+.+ ++ ....+..+........++..++|+|||+.++...........+.+++..... +. .
T Consensus 226 ~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~ 305 (740)
T 4a5s_A 226 PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVAR 305 (740)
T ss_dssp CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGG
T ss_pred CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEE
Confidence 478888877 63 1222222111001345688999999999776654433334456666654432 11 1
Q ss_pred ee--cCCCCCEE-----EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEE-EEeC-C--CcEEEEeCC
Q 040062 256 DF--LGHNAPII-----VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIA-IGSQ-D--RTITVWTTA 324 (689)
Q Consensus 256 ~l--~~h~~~v~-----~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~la-sgs~-D--g~I~iwd~~ 324 (689)
.+ ..|...+. ...|+|++ +.|+ ..+. + ..|++||+.
T Consensus 306 ~l~~~~~~~~v~~~~~~~p~fspDG---------------------------------~~l~~~~s~~~G~~~l~~~~~~ 352 (740)
T 4a5s_A 306 QHIEMSTTGWVGRFRPSEPHFTLDG---------------------------------NSFYKIISNEEGYRHICYFQID 352 (740)
T ss_dssp CEEEECSSSCSSSSSCCCCEECTTS---------------------------------SEEEEEEECTTSCEEEEEEETT
T ss_pred EeeeccCCceEccCcCCCceEcCCC---------------------------------CEEEEEEEcCCCceEEEEEECC
Confidence 11 33443332 45566664 5555 5543 3 468888988
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCC-----CcEEEEEee--ccccccccChHHHHHHHHhccCCccCceee
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLD-----GTVANFHFE--VKELGHRLSDAELDELKRSRYGDVRGRLAN 397 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D-----G~I~vwd~~--~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~ 397 (689)
.+....... . .-.+..+.+ +|++.|+..+.. +...||.+. .+.....+.. ...........
T Consensus 353 ~~~~~~lT~-g-~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~---------~~~~~~~~~~~ 420 (740)
T 4a5s_A 353 KKDCTFITK-G-TWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSC---------ELNPERCQYYS 420 (740)
T ss_dssp CSSCEESCC-S-SSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESST---------TTSTTTBCBEE
T ss_pred CCceEeccc-C-CEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeecc---------ccCCCCCceEE
Confidence 776654332 2 344555442 446665554433 445555554 3322112221 00012234788
Q ss_pred eecCchhhhhHhhc
Q 040062 398 LAETPAQLLLEAAS 411 (689)
Q Consensus 398 l~~Spdg~~Las~s 411 (689)
+.||||+.+++...
T Consensus 421 ~~~S~dg~~~~~~~ 434 (740)
T 4a5s_A 421 VSFSKEAKYYQLRC 434 (740)
T ss_dssp EEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEEe
Confidence 99999998776543
No 159
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3.5e-18 Score=182.60 Aligned_cols=307 Identities=9% Similarity=-0.037 Sum_probs=197.0
Q ss_pred ceeeeeecCCCCcEEE-----EEEcCCCCEEEEEeC-CC--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC
Q 040062 56 QRLLATLRDHFGSVNC-----VRWAKHGRYIASGSD-DQ--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD 127 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~-----v~fspdg~~Lasgs~-Dg--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 127 (689)
+..+..+..|...... .+|+|||++|+.++. ++ .|.+||+.++ +......++...
T Consensus 20 g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g-----------------~~~~lt~~~~~~ 82 (388)
T 3pe7_A 20 GAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ-----------------VATQLTEGRGDN 82 (388)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTC-----------------EEEECCCSSCBC
T ss_pred CcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCC-----------------ceEEeeeCCCCC
Confidence 6677778888777776 889999999999887 66 4888888776 444445556555
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEE--ccCCCEEEEEe-------------------
Q 040062 128 VVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAW--DPIGSFIASQS------------------- 186 (689)
Q Consensus 128 V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~--spdg~~las~s------------------- 186 (689)
+..++|+||++.|+.++.++.|++||+.+++....+..+...+....| ++++++++...
T Consensus 83 ~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T 3pe7_A 83 TFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFY 162 (388)
T ss_dssp SSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHG
T ss_pred ccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhh
Confidence 557789999999999999999999999999888777777666654444 89999887432
Q ss_pred ---CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC-CCCeEEEecCCCC--CccccceeecCCceeeeeecCC
Q 040062 187 ---DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP-CGHFITTTHGFQK--PRHSAPVLERGEWAATFDFLGH 260 (689)
Q Consensus 187 ---~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~h 260 (689)
.+..|.+||+.+++....... ...+..+.|+| ||+.|+....... ....+.+++...... ..+..+
T Consensus 163 ~~~~~~~l~~~d~~~g~~~~l~~~-------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~ 234 (388)
T 3pe7_A 163 FTKPCCRLMRVDLKTGESTVILQE-------NQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTH 234 (388)
T ss_dssp GGCCCEEEEEEETTTCCEEEEEEE-------SSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCC
T ss_pred ccCCcceEEEEECCCCceEEeecC-------CccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeC
Confidence 346899999998865544322 12378899999 9999887765321 123444455433222 223333
Q ss_pred C--CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE-EeCCC----cEEEEeCCCCCceEEec
Q 040062 261 N--APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI-GSQDR----TITVWTTASPRPLFVAK 333 (689)
Q Consensus 261 ~--~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las-gs~Dg----~I~iwd~~~~~~~~~~~ 333 (689)
. ..+....|+|++ +.|+. +..++ .|++||+.+++......
T Consensus 235 ~~~~~~~~~~~spdg---------------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (388)
T 3pe7_A 235 AEGESCTHEFWVPDG---------------------------------SALVYVSYLKGSPDRFIYSADPETLENRQLTS 281 (388)
T ss_dssp CTTEEEEEEEECTTS---------------------------------SCEEEEEEETTCCCEEEEEECTTTCCEEEEEE
T ss_pred CCCcccccceECCCC---------------------------------CEEEEEecCCCCCcceEEEEecCCCceEEEEc
Confidence 3 357778898886 44433 33222 39999999887543322
Q ss_pred ccC-C---CCeEEEEEccCCCeEEEE---------eCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeec
Q 040062 334 HFF-T---QSVVDLSWSPDGYSLFAC---------SLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAE 400 (689)
Q Consensus 334 ~~h-~---~~V~~l~~spdg~~L~sg---------s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~ 400 (689)
... . .....+.|+|||+.|+.. ..+..|++||+.++++.. +..... .....++.....+..++|
T Consensus 282 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~--~~~~~~~~~~~~~~~~~~ 358 (388)
T 3pe7_A 282 MPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHR-VARHDT--SWKVFEGDRQVTHPHPSF 358 (388)
T ss_dssp ECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEE-EEECCC--CCCCBTTBSSTTCCCCEE
T ss_pred CCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEE-eccccC--cccccccccccCCCCccC
Confidence 110 0 001223799999988864 446689999998876532 110000 000000111114788999
Q ss_pred CchhhhhHhhc-cccceeeeeeec
Q 040062 401 TPAQLLLEAAS-AKETTTKKVVSD 423 (689)
Q Consensus 401 Spdg~~Las~s-~DG~v~~~~~~~ 423 (689)
||||+.|+..+ .+|......+.+
T Consensus 359 spDg~~l~~~s~~~g~~~l~~~~l 382 (388)
T 3pe7_A 359 TPDDKQILFTSDVHGKPALYLATL 382 (388)
T ss_dssp CTTSSEEEEEECTTSSCEEEEEEC
T ss_pred CCCCCEEEEEecCCCceeEEEEEC
Confidence 99998888665 466654444433
No 160
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=3.4e-18 Score=182.70 Aligned_cols=281 Identities=10% Similarity=0.024 Sum_probs=185.0
Q ss_pred EEEcCCCCEEEEEeC-CC--eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 19 IDVQPGALRFATGGG-DH--KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 19 i~~spdg~~Latgs~-Dg--~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
.+|||||++|++++. ++ .|.+||+.. ++......+|...+..++|+|||++|++++.++.|++||+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~-----------g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~ 109 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNT-----------QVATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDL 109 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTT-----------CEEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEET
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCC-----------CceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEEC
Confidence 789999999999987 66 478888875 4555555556555557789999999999999999999999
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEE--EcCCCCEEEEEe----------------------CCCeEEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLN--WSPDDSILASGS----------------------LDNTIHI 151 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~--~spdg~~Lasgs----------------------~Dg~I~v 151 (689)
.++ +....+..+...+.... +++++.+++... .+..|.+
T Consensus 110 ~~g-----------------~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 172 (388)
T 3pe7_A 110 ATL-----------------EENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMR 172 (388)
T ss_dssp TTC-----------------CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEE
T ss_pred CCC-----------------cceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEE
Confidence 987 33344444555454444 489999887432 3468999
Q ss_pred EEcCCCeEEEEEecCCCCeEEEEEcc-CCCEEEEEeCC------CeEEEEECCCCcceeeccCcccccCCcccEEEEEEc
Q 040062 152 WNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSDD------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 152 wd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
||+.+++..... .+...+..+.|+| +|+.|+....+ ..|.++|+............ ....+..+.|+
T Consensus 173 ~d~~~g~~~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~-----~~~~~~~~~~s 246 (388)
T 3pe7_A 173 VDLKTGESTVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHA-----EGESCTHEFWV 246 (388)
T ss_dssp EETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCC-----TTEEEEEEEEC
T ss_pred EECCCCceEEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCC-----CCcccccceEC
Confidence 999988765444 4677889999999 99998887753 37888887665443322211 01236678999
Q ss_pred CCCCeEEEecCC-CCCccccceeecCCceee--eeecCCCCC---EEEEEEcCCccccccccccccccccccccCCcccc
Q 040062 225 PCGHFITTTHGF-QKPRHSAPVLERGEWAAT--FDFLGHNAP---IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 225 pdg~~l~~~~~~-~~~~~~~~i~~~~~~~~~--~~l~~h~~~---v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
|||+.|+..... +.....+.+|+....... ..+.++... ...+.|+|++
T Consensus 247 pdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg------------------------- 301 (388)
T 3pe7_A 247 PDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDG------------------------- 301 (388)
T ss_dssp TTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEE-------------------------
T ss_pred CCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCC-------------------------
Confidence 999988665432 222224667766544322 122210000 0001344443
Q ss_pred cCccCCCCcEEEEE---------eCCCcEEEEeCCCCCceEEecccCCC-----------CeEEEEEccCCCeEEEEe-C
Q 040062 299 GGKESQPYNVIAIG---------SQDRTITVWTTASPRPLFVAKHFFTQ-----------SVVDLSWSPDGYSLFACS-L 357 (689)
Q Consensus 299 ~~~~s~~~~~lasg---------s~Dg~I~iwd~~~~~~~~~~~~~h~~-----------~V~~l~~spdg~~L~sgs-~ 357 (689)
+.|+.. ..+..|++||+.+++...... +.. .+.+++|+|||++|+..+ .
T Consensus 302 --------~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~ 371 (388)
T 3pe7_A 302 --------SDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVAR--HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDV 371 (388)
T ss_dssp --------CCC------------CCCCEEEEEETTTTEEEEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECT
T ss_pred --------CcceeEeeeccccccCCCCEEEEEeccCCceEEecc--ccCcccccccccccCCCCccCCCCCCEEEEEecC
Confidence 444432 456789999998876543332 233 478899999999888765 5
Q ss_pred CCcEEEEEeec
Q 040062 358 DGTVANFHFEV 368 (689)
Q Consensus 358 DG~I~vwd~~~ 368 (689)
+|...||.++-
T Consensus 372 ~g~~~l~~~~l 382 (388)
T 3pe7_A 372 HGKPALYLATL 382 (388)
T ss_dssp TSSCEEEEEEC
T ss_pred CCceeEEEEEC
Confidence 78777877653
No 161
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.80 E-value=7.5e-17 Score=170.85 Aligned_cols=276 Identities=12% Similarity=0.079 Sum_probs=181.1
Q ss_pred ceEEEEEEcCCCCEEEEEeCC----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe-CCC
Q 040062 14 MQIFSIDVQPGALRFATGGGD----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS-DDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~D----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-~Dg 88 (689)
.....++|+|||++|++++.+ +.|.+|++.... ...+.+.....+......+++ ++++|++++ .++
T Consensus 50 ~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-------g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~ 120 (361)
T 3scy_A 50 ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-------GTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGG 120 (361)
T ss_dssp SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-------TEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTT
T ss_pred CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-------CcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCC
Confidence 467889999999999999885 799999987510 112444555556667888888 888777776 578
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEe--------cCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCe-
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR--------GHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGI- 158 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~--------~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~- 158 (689)
.|.+|++......... ....... .+...+.+++|+||+++|++++ .++.|.+|++....
T Consensus 121 ~v~~~~~~~~g~~~~~-----------~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~ 189 (361)
T 3scy_A 121 SITVFPIGQDGALLPA-----------SDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNAN 189 (361)
T ss_dssp EEEEEEBCTTSCBCSC-----------SEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCC
T ss_pred EEEEEEeCCCCcCccc-----------ceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCC
Confidence 9999999764322111 0111111 1234578999999999776655 47899999887533
Q ss_pred ------E------EEEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC
Q 040062 159 ------C------TAVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP 225 (689)
Q Consensus 159 ------~------~~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp 225 (689)
. ......+...+.+++|+|+|++|++++ .++.|.+||+.++........... .........++|+|
T Consensus 190 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~-~~~~~~~~~i~~sp 268 (361)
T 3scy_A 190 ADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAAD-TVNAQGSGDIHLSP 268 (361)
T ss_dssp TTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESC-SSCCCCEEEEEECT
T ss_pred cccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecC-CCCCCCcccEEECC
Confidence 1 122233456788999999999888777 689999999987654222111110 01122357899999
Q ss_pred CCCeEEEecCCCCCccccceeecC----CceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 226 CGHFITTTHGFQKPRHSAPVLERG----EWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 226 dg~~l~~~~~~~~~~~~~~i~~~~----~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
||++|+++.... ...+.+|+.. .......+.. ...+..++|+|++
T Consensus 269 dg~~l~v~~~~~--~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg---------------------------- 317 (361)
T 3scy_A 269 DGKYLYASNRLK--ADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNG---------------------------- 317 (361)
T ss_dssp TSSEEEEEECSS--SCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTS----------------------------
T ss_pred CCCEEEEECCCC--CCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCC----------------------------
Confidence 999998776531 2345565543 2223333333 4556778888876
Q ss_pred cCCCCcEEEEEe-CCCcEEEEe--CCCCCceEEecccCCCCeEEEEEc
Q 040062 302 ESQPYNVIAIGS-QDRTITVWT--TASPRPLFVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 302 ~s~~~~~lasgs-~Dg~I~iwd--~~~~~~~~~~~~~h~~~V~~l~~s 346 (689)
++|++++ .++.|.+|+ ..+++........+...+.|+.|.
T Consensus 318 -----~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 318 -----KYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp -----CEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred -----CEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7777777 678999965 456665544333445678999886
No 162
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=8.8e-19 Score=203.64 Aligned_cols=299 Identities=9% Similarity=0.032 Sum_probs=189.5
Q ss_pred EEEEEEcCCCCEEEEEeC---------CCeEEEEeCCcCCCCCCCCcccceee--eeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 16 IFSIDVQPGALRFATGGG---------DHKVRIWNMKSVGKNFENDESTQRLL--ATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 16 I~si~~spdg~~Latgs~---------Dg~V~IWd~~~~~~~~~~~~~~~~~~--~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
|.+++|||||++|++++. ++.|++||+.+ ++.+ ..+ ...+.+++|||||++||++
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~-----------g~~~~~~~l---~~~~~~~~~SPDG~~la~~ 127 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN-----------GEFVRGNEL---PRPIQYLCWSPVGSKLAYV 127 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-----------TEECCSSCC---CSSBCCEEECSSTTCEEEE
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC-----------Cccccceec---CcccccceECCCCCEEEEE
Confidence 899999999999999876 78999999986 3331 222 2458889999999999998
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC---------EEEEEEcCCCCEEEEEeCCC--------
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD---------VVDLNWSPDDSILASGSLDN-------- 147 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~---------V~~l~~spdg~~Lasgs~Dg-------- 147 (689)
. |+.|++|++.++........+.. ...+.+|... ..+++|||||++|++++.|.
T Consensus 128 ~-~~~i~~~~~~~g~~~~l~~~~~~--------~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 128 Y-QNNIYLKQRPGDPPFQITFNGRE--------NKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp E-TTEEEEESSTTSCCEECCCCCBT--------TTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred E-CCeEEEEeCCCCCcEEEecCCCc--------CCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 6 78999999987643211100000 0011233222 25899999999999988652
Q ss_pred --------------------------eEEEEEcCCCeEE---E-----EEecCCCCeEEEEEccCCCEEEEEeCC----C
Q 040062 148 --------------------------TIHIWNMSTGICT---A-----VLRGHSSLVKGVAWDPIGSFIASQSDD----K 189 (689)
Q Consensus 148 --------------------------~I~vwd~~~~~~~---~-----~l~~h~~~V~~l~~spdg~~las~s~D----g 189 (689)
.|++||+.+++.. . .+.+|...+..++|+||++++++.... .
T Consensus 199 ~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~ 278 (719)
T 1z68_A 199 SYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVS 278 (719)
T ss_dssp EECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEE
T ss_pred eccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeE
Confidence 7899999887642 1 123578889999999998877764422 2
Q ss_pred eEEEEE----CCCCcceeecc----CcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC
Q 040062 190 TVIIWR----TSDWSLAHRTD----GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN 261 (689)
Q Consensus 190 ~I~iwd----~~~~~~~~~~~----~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~ 261 (689)
.|.+|| +.+++....+. .+... ........+.|+|||+.++...........+.+++..... ...+..+.
T Consensus 279 ~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~~ 356 (719)
T 1z68_A 279 VLSICDFREDWQTWDCPKTQEHIEESRTGW-AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSGK 356 (719)
T ss_dssp EEEEEEECSSSSSEECCGGGEEEEECSSSC-SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCSS
T ss_pred EEEEEcccCCCCCCceEEEEecccccCCce-EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccCc
Confidence 488899 77776655442 22111 0000011678999999776643322223445555544333 23344445
Q ss_pred CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC----CCcEEEEeCCC--CC-ceEEecc
Q 040062 262 APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----DRTITVWTTAS--PR-PLFVAKH 334 (689)
Q Consensus 262 ~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----Dg~I~iwd~~~--~~-~~~~~~~ 334 (689)
..+..+.+. ++ +.+++++.. ++..++|.+.. +. ....+..
T Consensus 357 ~~v~~~~~~-d~--------------------------------~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~ 403 (719)
T 1z68_A 357 WEAINIFRV-TQ--------------------------------DSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVTC 403 (719)
T ss_dssp SCEEEEEEE-CS--------------------------------SEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESST
T ss_pred eEEEEEEEE-eC--------------------------------CEEEEEEecCCCCCceEEEEEEeCCCCCCCceeccC
Confidence 556665555 43 134444443 47888888764 32 1233321
Q ss_pred ---cCCCCeEEEEEccCCCeEEE-EeCC--CcEEEEEeeccccc
Q 040062 335 ---FFTQSVVDLSWSPDGYSLFA-CSLD--GTVANFHFEVKELG 372 (689)
Q Consensus 335 ---~h~~~V~~l~~spdg~~L~s-gs~D--G~I~vwd~~~~~l~ 372 (689)
.|...+..+.|+||+++|+. ++.+ ..+++||+.+++..
T Consensus 404 ~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~ 447 (719)
T 1z68_A 404 HLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEI 447 (719)
T ss_dssp TTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEE
T ss_pred ccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEE
Confidence 14556889999999988775 3333 46889988776643
No 163
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.78 E-value=2.3e-17 Score=175.51 Aligned_cols=256 Identities=10% Similarity=0.037 Sum_probs=167.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCC-cCCCCCCCCcccceeeeeecC-CCCcEEEEEEcCCCCE--EEEEe-----
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMK-SVGKNFENDESTQRLLATLRD-HFGSVNCVRWAKHGRY--IASGS----- 85 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~-~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fspdg~~--Lasgs----- 85 (689)
.+..++|+|||++|++++.+ .|.+|++. + ++....... ..+.+.+++|+|+|++ ++++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~-----------g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~ 108 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSP-----------TEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEET-----------TEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCC-----------CCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcce
Confidence 67899999999999999887 99999986 3 333222210 0123556899999994 45553
Q ss_pred --------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcC
Q 040062 86 --------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSL-DNTIHIWNMS 155 (689)
Q Consensus 86 --------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~ 155 (689)
.++.+.+|++....... ..+..+. .+...+.+++|+|||++|+++.. ++.|++||+.
T Consensus 109 ~~~~~~~~~~g~v~v~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~ 175 (365)
T 1jof_A 109 VYANPFYKFAGYGNVFSVSETGKLE-------------KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKL 175 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEE-------------EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred eccceeecCCceEEEEccCCCCcCc-------------ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEEC
Confidence 68999999997421100 1111111 25567999999999998887764 6799999998
Q ss_pred -CCeEE--EEEe--cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEECC--CCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 156 -TGICT--AVLR--GHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRTS--DWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 156 -~~~~~--~~l~--~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
+++.. ..+. .|...+..++|+|+|++|++++. ++.|.+|+++ +++...... .+...|.+
T Consensus 176 ~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~-------------~~~~~~~~ 242 (365)
T 1jof_A 176 ASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHH-------------SFPLIPPG 242 (365)
T ss_dssp TTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE-------------EEESSCTT
T ss_pred CCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccc-------------eEEcCCCC
Confidence 67653 3343 24677899999999999988775 6899999875 333221000 00000000
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCC------CEEEEE-EcCCccccccccccccccccccccCCcccccC
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNA------PIIVVK-FNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~------~v~~v~-fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
+.+|.. .+..++ |+|++
T Consensus 243 -----------------------------~~g~~~~~~~~~~~~~i~~~spdG--------------------------- 266 (365)
T 1jof_A 243 -----------------------------IPDRDPETGKGLYRADVCALTFSG--------------------------- 266 (365)
T ss_dssp -----------------------------CCCBCTTTSSBSEEEEEEEECTTS---------------------------
T ss_pred -----------------------------cCCcccccccccccccEEEECCCC---------------------------
Confidence 001111 355667 77765
Q ss_pred ccCCCCcEEEEEeCC-C-----cEEEEeCC-CCCceEE--ecccCCCCeEEEEEcc---CCCeEEEEeCC-CcEEEEEee
Q 040062 301 KESQPYNVIAIGSQD-R-----TITVWTTA-SPRPLFV--AKHFFTQSVVDLSWSP---DGYSLFACSLD-GTVANFHFE 367 (689)
Q Consensus 301 ~~s~~~~~lasgs~D-g-----~I~iwd~~-~~~~~~~--~~~~h~~~V~~l~~sp---dg~~L~sgs~D-G~I~vwd~~ 367 (689)
++|++++.+ + .|.+|++. +++.... ....+...+..++|+| ||++|++++.+ +.|.+|+++
T Consensus 267 ------~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~ 340 (365)
T 1jof_A 267 ------KYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWK 340 (365)
T ss_dssp ------SEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEE
T ss_pred ------CEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEc
Confidence 555554432 2 79999986 4554321 1222344577899999 89999999875 899999998
Q ss_pred ccc
Q 040062 368 VKE 370 (689)
Q Consensus 368 ~~~ 370 (689)
...
T Consensus 341 ~~~ 343 (365)
T 1jof_A 341 DEF 343 (365)
T ss_dssp TTE
T ss_pred hhh
Confidence 763
No 164
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.77 E-value=2.5e-17 Score=172.78 Aligned_cols=274 Identities=10% Similarity=-0.030 Sum_probs=178.8
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEE-EEeCCCe
Q 040062 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILA-SGSLDNT 148 (689)
Q Consensus 71 ~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~La-sgs~Dg~ 148 (689)
.+++++++.++++++.++.|.+||+.++ +....+..+. ..+..++|+|++++++ +...++.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~ 66 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-----------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 66 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-----------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-----------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCc
Confidence 4568888999999999999999999887 5555555443 2578999999998655 5557899
Q ss_pred EEEEEcCCCeEEEEEecCC------CCeEEEEEccCCCEEEEEeCC------------CeEEEEECCCCcceeeccCccc
Q 040062 149 IHIWNMSTGICTAVLRGHS------SLVKGVAWDPIGSFIASQSDD------------KTVIIWRTSDWSLAHRTDGHWA 210 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~------~~V~~l~~spdg~~las~s~D------------g~I~iwd~~~~~~~~~~~~~~~ 210 (689)
|.+||+.+++.+..+..+. ..+.+++|+|+|++|++++.+ +.|.+||+.+++....+.....
T Consensus 67 i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~ 146 (349)
T 1jmx_B 67 IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM 146 (349)
T ss_dssp EEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC
T ss_pred EEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC
Confidence 9999999999888776432 237889999999999998865 8999999987554332221110
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC--C----------------------CEEE
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN--A----------------------PIIV 266 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~--~----------------------~v~~ 266 (689)
...+.+++|+|+|+ +++... .+.+|+.........+..+. . ....
T Consensus 147 ----~~~~~~~~~s~dg~-l~~~~~------~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (349)
T 1jmx_B 147 ----PRQVYLMRAADDGS-LYVAGP------DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYT 215 (349)
T ss_dssp ----CSSCCCEEECTTSC-EEEESS------SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEE
T ss_pred ----CCcccceeECCCCc-EEEccC------cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeee
Confidence 11367788999999 555422 26667765544433332211 0 1111
Q ss_pred EEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEc
Q 040062 267 VKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS 346 (689)
Q Consensus 267 v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 346 (689)
+.+++++.... ..+ .....++.....++.+++|++ ..+...+..++|+
T Consensus 216 ~~~~~d~~~~~-----------~~~-----------~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~s 263 (349)
T 1jmx_B 216 IARFKDDKQDP-----------ATA-----------DLLYGYLSVDLKTGKTHTQEF----------ADLTELYFTGLRS 263 (349)
T ss_dssp EEEC------------------CCC-----------EEEEEEEEEETTTCCEEEEEE----------EECSSCEEEEEEC
T ss_pred eeecCCCcCCc-----------ccc-----------ccceeEEEEeccCCcEEeccc----------ccCCCcceeeEec
Confidence 22222110000 000 000012223333444555444 2245678899999
Q ss_pred c-CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 347 P-DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 347 p-dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
| ||++|+++ ++.|++||+.+++....+. ....+.+++|+|||.+|++++.++.| .++.
T Consensus 264 p~dg~~l~~~--~~~v~~~d~~~~~~~~~~~--------------~~~~~~~~~~s~dg~~l~~~~~~~~v--~v~d 322 (349)
T 1jmx_B 264 PKDPNQIYGV--LNRLAKYDLKQRKLIKAAN--------------LDHTYYCVAFDKKGDKLYLGGTFNDL--AVFN 322 (349)
T ss_dssp SSCTTEEEEE--ESEEEEEETTTTEEEEEEE--------------CSSCCCEEEECSSSSCEEEESBSSEE--EEEE
T ss_pred CCCCCEEEEE--cCeEEEEECccCeEEEEEc--------------CCCCccceEECCCCCEEEEecCCCeE--EEEe
Confidence 9 99999988 8899999998877654331 11247899999999988888888888 5443
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.75 E-value=1.1e-16 Score=170.11 Aligned_cols=273 Identities=11% Similarity=0.077 Sum_probs=170.0
Q ss_pred EEEEEeCC--CeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC-CCCCcc
Q 040062 27 RFATGGGD--HKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKK-PGSGTT 102 (689)
Q Consensus 27 ~Latgs~D--g~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~-~~~~~~ 102 (689)
+|++|+.. +.|.+|++.... .....+.... .+...+..++|+|+|++|++++.+ .|.+|++. ++
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~-------g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---- 71 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEK-------LTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---- 71 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTT-------TEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT----
T ss_pred EEEEEEccCCCcEEEEEEECCC-------CCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC----
Confidence 45666653 568888764310 0112222221 233467889999999999999888 99999997 54
Q ss_pred ccCCCCCCCcccceEEEE--EecCCCCEEEEEEcCCCCE--EEEEe-------------CCCeEEEEEcC-CCeEEEEEe
Q 040062 103 EFGSGEPPDIENWKVAMT--LRGHTADVVDLNWSPDDSI--LASGS-------------LDNTIHIWNMS-TGICTAVLR 164 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~--l~~h~~~V~~l~~spdg~~--Lasgs-------------~Dg~I~vwd~~-~~~~~~~l~ 164 (689)
+.... ...+ ..+.+++|+||+++ ++++. .++.+.+|++. +++....+.
T Consensus 72 -------------~~~~~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~ 137 (365)
T 1jof_A 72 -------------EIVHEASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQ 137 (365)
T ss_dssp -------------EEEEEEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEE
T ss_pred -------------CEEEeeEeecC-CCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEe
Confidence 22222 1111 23556899999994 44553 68999999997 466554443
Q ss_pred ----cCCCCeEEEEEccCCCEEEEEeC-CCeEEEEECC-CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC
Q 040062 165 ----GHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK 238 (689)
Q Consensus 165 ----~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~ 238 (689)
.+...+.+++|+|+|++|++++. ++.|++||+. +++.......
T Consensus 138 ~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~------------------------------- 186 (365)
T 1jof_A 138 NYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSV------------------------------- 186 (365)
T ss_dssp EEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEE-------------------------------
T ss_pred eEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeE-------------------------------
Confidence 25678999999999998887764 6799999997 5543211000
Q ss_pred CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC-CCc
Q 040062 239 PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRT 317 (689)
Q Consensus 239 ~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~ 317 (689)
.+..|...+..++|+|++ +++++++. ++.
T Consensus 187 -----------------~~~~~g~~p~~~~~spdg---------------------------------~~l~v~~~~~~~ 216 (365)
T 1jof_A 187 -----------------DAPDPGDHPRWVAMHPTG---------------------------------NYLYALMEAGNR 216 (365)
T ss_dssp -----------------ECSSTTCCEEEEEECTTS---------------------------------SEEEEEETTTTE
T ss_pred -----------------ecCCCCCCCCEeEECCCC---------------------------------CEEEEEECCCCe
Confidence 000122335556666665 45555443 567
Q ss_pred EEEEeCC--CCCceE---Eecc------cCCC------CeEEEE-EccCCCeEEEEeCCC------cEEEEEee-ccccc
Q 040062 318 ITVWTTA--SPRPLF---VAKH------FFTQ------SVVDLS-WSPDGYSLFACSLDG------TVANFHFE-VKELG 372 (689)
Q Consensus 318 I~iwd~~--~~~~~~---~~~~------~h~~------~V~~l~-~spdg~~L~sgs~DG------~I~vwd~~-~~~l~ 372 (689)
|.+|++. +++... .+.. .|.. .+..++ |+|||++|++++.+. .|.+|+++ ++++.
T Consensus 217 v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~ 296 (365)
T 1jof_A 217 ICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIE 296 (365)
T ss_dssp EEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEE
T ss_pred EEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEE
Confidence 7787654 344321 1111 1121 488999 999999998876432 89999996 45432
Q ss_pred cccChHHHHHHHHhccCCccCceeeeecCc---hhhhhHhhccc-cce
Q 040062 373 HRLSDAELDELKRSRYGDVRGRLANLAETP---AQLLLEAASAK-ETT 416 (689)
Q Consensus 373 ~~l~~~~~~~~~~~~~g~~~~~I~~l~~Sp---dg~~Las~s~D-G~v 416 (689)
... .....+...+..++|+| ||++|++++.+ ++|
T Consensus 297 ~~~----------~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v 334 (365)
T 1jof_A 297 KQL----------FLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWL 334 (365)
T ss_dssp EEE----------EEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEE
T ss_pred Eee----------eeeecCCCCcccceecCCCcCCCEEEEEEcCCCeE
Confidence 110 01111223467899999 89999988764 777
No 166
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.75 E-value=1.4e-15 Score=159.28 Aligned_cols=259 Identities=13% Similarity=0.121 Sum_probs=181.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCC------------------------CeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCc
Q 040062 14 MQIFSIDVQPGALRFATGGGD------------------------HKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGS 68 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~D------------------------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~ 68 (689)
..|.+|+++|+|+++++...+ +.|.+||..+ ++.+..+. .+...
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~-----------g~~~~~~~~~~~~~ 92 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNN-----------AEILQSSGKNLFYL 92 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTT-----------CCEEEEECTTTCSS
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCC-----------CeEEeccCCCccCC
Confidence 479999999999999888777 4799999875 45555443 45567
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC-CccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEe-C
Q 040062 69 VNCVRWAKHGRYIASGSDDQVILIHEKKPGS-GTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGS-L 145 (689)
Q Consensus 69 V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~-~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs-~ 145 (689)
...++++++|+++++...++.|++|+.+... ....++...... .-..+-.....|+|+| ++.++++.+ .
T Consensus 93 p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g--------~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 93 PHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPG--------SDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCC--------CSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred ceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCC--------CCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 8999999999999988889999999986541 111111000000 0023455789999999 788777776 6
Q ss_pred CCeEEEEEcCCCeEEEEEecC----------CCCeEEEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 146 DNTIHIWNMSTGICTAVLRGH----------SSLVKGVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~h----------~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
++.|++|| .+++.+..+... -....+|+++|+ +.++++...++.|++||..+++.+..+.....
T Consensus 165 ~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~---- 239 (329)
T 3fvz_A 165 NSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASF---- 239 (329)
T ss_dssp CCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTT----
T ss_pred CCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecccc----
Confidence 89999999 567777766432 234889999998 67777777889999999987777665542211
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
...+..++|+| +..+..
T Consensus 240 ~~~~~~~~~~p-g~~~~~-------------------------------------------------------------- 256 (329)
T 3fvz_A 240 GRNVFAISYIP-GFLFAV-------------------------------------------------------------- 256 (329)
T ss_dssp TTCEEEEEEET-TEEEEE--------------------------------------------------------------
T ss_pred CCCcceeeecC-CEEEEe--------------------------------------------------------------
Confidence 11133444444 211111
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEec--ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK--HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
+++.+++...+..|++||..+++.+..+. ..+...+..++++|+|.++++...++.|++|+++..
T Consensus 257 ----------~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 257 ----------NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp ----------ECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred ----------CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence 01223333456689999999998887764 235667999999999988888888999999998753
No 167
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.74 E-value=1.2e-16 Score=170.68 Aligned_cols=279 Identities=10% Similarity=0.054 Sum_probs=179.7
Q ss_pred EEEEEEcCCCCEEEEEeCC---CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcE-EEEEEcCCCCEEEEEeCCCeEE
Q 040062 16 IFSIDVQPGALRFATGGGD---HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSV-NCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 16 I~si~~spdg~~Latgs~D---g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V-~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
+.+++|+|||++|+..... ..|.+||+.. ++.. .+..+...+ ..+.|+|||++|+.++.++.|.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~-----------~~~~-~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLET-----------QQAV-QLTEGKGDNTFGGFISTDERAFFYVKNELNLM 105 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTT-----------TEEE-ECCCSSCBCTTTCEECTTSSEEEEEETTTEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCC-----------CcEE-EeecCCCCccccceECCCCCEEEEEEcCCcEE
Confidence 6788999999998887543 4688888875 3332 333333333 3478999999999999999999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEE-------------------EEEcCCCCEEEEE-----eCCC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVD-------------------LNWSPDDSILASG-----SLDN 147 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~-------------------l~~spdg~~Lasg-----s~Dg 147 (689)
+|++.++.. ......+.....+ +.|+|+++.++.. ..+.
T Consensus 106 ~~d~~~~~~-----------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~ 168 (396)
T 3c5m_A 106 KVDLETLEE-----------------QVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTC 168 (396)
T ss_dssp EEETTTCCE-----------------EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCE
T ss_pred EEECCCCCc-----------------EEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcc
Confidence 999987632 2222222221111 3578888876654 3567
Q ss_pred eEEEEEcCCCeEEEEEecCCCCeEEEEEcc-CCCEEEEEeCC------CeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 148 TIHIWNMSTGICTAVLRGHSSLVKGVAWDP-IGSFIASQSDD------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 148 ~I~vwd~~~~~~~~~l~~h~~~V~~l~~sp-dg~~las~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
.|++||+.+++..... .+...+..+.|+| +++.|+..+.+ ..|.+||+..+....... .. ....+..
T Consensus 169 ~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~-~~----~~~~~~~ 242 (396)
T 3c5m_A 169 RLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKE-HA----EGESCTH 242 (396)
T ss_dssp EEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSC-CC----TTEEEEE
T ss_pred eEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeec-cC----CCccccc
Confidence 8999999988766555 4677889999999 78877766543 368888987654333222 10 1123778
Q ss_pred EEEcCCCCeEEEecCCCC-CccccceeecCCceeeeeecCCCCCEEEEEEcC-CccccccccccccccccccccCCcccc
Q 040062 221 LGWSPCGHFITTTHGFQK-PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNH-SMFRRNSASSQEVKAAPVGWTNGTSKI 298 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (689)
+.|+|+|++|+....... ....+.+|+........... ... .. +.|+| ++
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~-~~~-~~-~~~s~~dg------------------------- 294 (396)
T 3c5m_A 243 EFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMV-MPP-CS-HLMSNFDG------------------------- 294 (396)
T ss_dssp EEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEE-CCS-EE-EEEECSSS-------------------------
T ss_pred eEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeee-CCC-CC-CCccCCCC-------------------------
Confidence 999999998877643222 12236677654433221111 111 22 67777 65
Q ss_pred cCccCCCCcEEEEEe----------------CCCcEEEEeCCCCCceEEecccCCC-----------CeEEEEEccCCCe
Q 040062 299 GGKESQPYNVIAIGS----------------QDRTITVWTTASPRPLFVAKHFFTQ-----------SVVDLSWSPDGYS 351 (689)
Q Consensus 299 ~~~~s~~~~~lasgs----------------~Dg~I~iwd~~~~~~~~~~~~~h~~-----------~V~~l~~spdg~~ 351 (689)
+++++++ .+..|++||+.+++...... +.. .+..++|+|||++
T Consensus 295 --------~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~s~dg~~ 364 (396)
T 3c5m_A 295 --------SLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCK--HSTSWDVLDGDRQITHPHPSFTPNDDG 364 (396)
T ss_dssp --------SEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEE--CCCCCCCBTTBSSTTCCCCEECTTSSE
T ss_pred --------ceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccC--CCCccccccccccCCCCCceEccCCCe
Confidence 5666544 34789999998876544322 222 2567899999998
Q ss_pred EEEEeC-CCcEEEEEee
Q 040062 352 LFACSL-DGTVANFHFE 367 (689)
Q Consensus 352 L~sgs~-DG~I~vwd~~ 367 (689)
|+.++. ++...+|.++
T Consensus 365 l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 365 VLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp EEEEECTTSSCEEEEEE
T ss_pred EEEEecCCCCceEEEEE
Confidence 887664 5666666654
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.74 E-value=5.9e-16 Score=164.35 Aligned_cols=294 Identities=9% Similarity=0.052 Sum_probs=186.6
Q ss_pred CCCCEEEEEe------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC----------
Q 040062 23 PGALRFATGG------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD---------- 86 (689)
Q Consensus 23 pdg~~Latgs------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~---------- 86 (689)
++++++++.. .|+.|++||..+ ++.+.++..+..+ .++|+|||++|+++..
T Consensus 13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t-----------~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~ 79 (361)
T 2oiz_A 13 PQENRIYVMDSVFMHLTESRVHVYDYTN-----------GKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKR 79 (361)
T ss_dssp CGGGEEEEEECCGGGGGGCEEEEEETTT-----------CCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCE
T ss_pred CCCCEEEEECCCCCccccCeEEEEECCC-----------CeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCC
Confidence 4667776654 367999999876 6667777766655 8999999999998863
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCe
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPDDSILASGSL--DNTIHIWNMSTGI 158 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~~~~~ 158 (689)
++.|.+||+.+. +....+.. +......++|+|||++|+++.. ++.|.+||+.+++
T Consensus 80 ~~~v~v~d~~t~-----------------~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~ 142 (361)
T 2oiz_A 80 SDVVEVWDADKL-----------------TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD 142 (361)
T ss_dssp EEEEEEEETTTC-----------------CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE
T ss_pred CCEEEEEECcCC-----------------cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc
Confidence 678999999876 34444432 2345678999999999998874 5799999999998
Q ss_pred EEEE-EecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCC-CcceeeccC--cccccCCcccEEEEEEcCCCCeEEEe
Q 040062 159 CTAV-LRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSD-WSLAHRTDG--HWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 159 ~~~~-l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~-~~~~~~~~~--~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.+.. +. +.. ...+.+.|++ ..+++.+.||.+.+|++.. ++....... .+.. ... ...+.+++++..++..
T Consensus 143 ~~~~~i~-~~~-~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~--~~~-~~~~~~~~~g~~~~~~ 217 (361)
T 2oiz_A 143 YVEDVTA-AAG-CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSV--KDD-PIFIAPALDKDKAHFV 217 (361)
T ss_dssp EEEEEGG-GTT-EEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCT--TTS-CBCSCCEECSSEEEEE
T ss_pred EEEEEec-CCC-cceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcC--CCC-ceEEEecccCCEEEEE
Confidence 8877 54 222 2335677876 6778888999999999865 443311110 0000 000 0112224444444433
Q ss_pred cCCCCCccccceeecCCcee----eeeecC----CC----CCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 234 HGFQKPRHSAPVLERGEWAA----TFDFLG----HN----APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~----~~~l~~----h~----~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
... ..+.+++...... .+.+.. +. .....++|+|
T Consensus 218 ~~~----~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~------------------------------ 263 (361)
T 2oiz_A 218 SYY----GNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHR------------------------------ 263 (361)
T ss_dssp BTT----SEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEET------------------------------
T ss_pred eCC----CeEEEEEecCCCceecccccccCccccccccccCCeeEEEEec------------------------------
Confidence 221 1222333211100 000000 00 0000123333
Q ss_pred cCCCCcEEEEEeC-----------CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc-
Q 040062 302 ESQPYNVIAIGSQ-----------DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK- 369 (689)
Q Consensus 302 ~s~~~~~lasgs~-----------Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~- 369 (689)
+++.++++.. .+.|.+||+.+++.+..+... . +.+++|+|||++|++++. +.|.+||..++
T Consensus 264 ---dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~ 336 (361)
T 2oiz_A 264 ---ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPE 336 (361)
T ss_dssp ---TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEEEEECS-SCEEEEECSSSS
T ss_pred ---CCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCc
Confidence 3345554432 358999999999988887753 3 999999999999999887 99999999998
Q ss_pred -ccccccChHHHHHHHHhccCCccCceeeeecCchhh
Q 040062 370 -ELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL 405 (689)
Q Consensus 370 -~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~ 405 (689)
++...+. .+......++++|||.
T Consensus 337 l~~~~~i~-------------~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 337 PKLLRTIE-------------GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEEET-------------TSCSSEEEEEECCCSC
T ss_pred ceeeEEec-------------cCCCCcEEEEecCCCC
Confidence 6654321 1233468899999985
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.73 E-value=3.4e-17 Score=175.01 Aligned_cols=291 Identities=11% Similarity=0.002 Sum_probs=181.9
Q ss_pred ceeeeeecCCCCc-----EEEEEEcCCCCEEEEEeCC---CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCC
Q 040062 56 QRLLATLRDHFGS-----VNCVRWAKHGRYIASGSDD---QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTAD 127 (689)
Q Consensus 56 ~~~~~~l~~h~~~-----V~~v~fspdg~~Lasgs~D---g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 127 (689)
+..+..+..+... +.+++|+|||++|+....+ ..|.+||+.++ +.. .+..+...
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~-----------------~~~-~l~~~~~~ 81 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ-----------------QAV-QLTEGKGD 81 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT-----------------EEE-ECCCSSCB
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCC-----------------cEE-EeecCCCC
Confidence 4555566555333 6778999999998877553 36888888776 222 23333333
Q ss_pred -EEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE-------------------EEEccCCCEEEEE--
Q 040062 128 -VVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG-------------------VAWDPIGSFIASQ-- 185 (689)
Q Consensus 128 -V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~-------------------l~~spdg~~las~-- 185 (689)
...+.|+||+++|+.++.++.|++||+.+++.......+...... +.|+|++++++..
T Consensus 82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~ 161 (396)
T 3c5m_A 82 NTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEF 161 (396)
T ss_dssp CTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred ccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeee
Confidence 334789999999999999999999999988877666655442222 3456677665543
Q ss_pred ---eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcC-CCCeEEEecCCCCC--ccccceeecCCceeeeeecC
Q 040062 186 ---SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSP-CGHFITTTHGFQKP--RHSAPVLERGEWAATFDFLG 259 (689)
Q Consensus 186 ---s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~sp-dg~~l~~~~~~~~~--~~~~~i~~~~~~~~~~~l~~ 259 (689)
..+..|++||+.+++....... ...+..+.|+| ++..|+........ ...+.+++....... .+..
T Consensus 162 ~~~~~~~~l~~~d~~~g~~~~~~~~-------~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~ 233 (396)
T 3c5m_A 162 YHTNPTCRLIKVDIETGELEVIHQD-------TAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKE 233 (396)
T ss_dssp HHTCCCEEEEEEETTTCCEEEEEEE-------SSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSC
T ss_pred ccCCCcceEEEEECCCCcEEeeccC-------CcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-Eeec
Confidence 3566899999988776544321 22378899999 78877766532111 134555554333222 2222
Q ss_pred C--CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC-----CcEEEEeCCCCCceEEe
Q 040062 260 H--NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD-----RTITVWTTASPRPLFVA 332 (689)
Q Consensus 260 h--~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D-----g~I~iwd~~~~~~~~~~ 332 (689)
+ ...+..+.|+|++ +.|+..+.+ +.|++||+.+++.....
T Consensus 234 ~~~~~~~~~~~~spdg---------------------------------~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~ 280 (396)
T 3c5m_A 234 HAEGESCTHEFWIPDG---------------------------------SAMAYVSYFKGQTDRVIYKANPETLENEEVM 280 (396)
T ss_dssp CCTTEEEEEEEECTTS---------------------------------SCEEEEEEETTTCCEEEEEECTTTCCEEEEE
T ss_pred cCCCccccceEECCCC---------------------------------CEEEEEecCCCCccceEEEEECCCCCeEEee
Confidence 2 2346778898886 555555433 44999999888754433
Q ss_pred cccCCCCeEEEEEcc-CCCeEEEEe----------------CCCcEEEEEeeccccccccChHHHHHHHHhcc----CCc
Q 040062 333 KHFFTQSVVDLSWSP-DGYSLFACS----------------LDGTVANFHFEVKELGHRLSDAELDELKRSRY----GDV 391 (689)
Q Consensus 333 ~~~h~~~V~~l~~sp-dg~~L~sgs----------------~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~----g~~ 391 (689)
.. . ... +.|+| ||++|++++ .++.|++||+.++++.. +.... ... .+.
T Consensus 281 ~~--~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~------~~~~~~~~~~ 349 (396)
T 3c5m_A 281 VM--P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHS------TSWDVLDGDR 349 (396)
T ss_dssp EC--C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECC------CCCCCBTTBS
T ss_pred eC--C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCC------Cccccccccc
Confidence 21 1 233 89999 999888754 34789999988766421 11000 000 000
Q ss_pred cCceeeeecCchhhhhHhhcc-ccce
Q 040062 392 RGRLANLAETPAQLLLEAASA-KETT 416 (689)
Q Consensus 392 ~~~I~~l~~Spdg~~Las~s~-DG~v 416 (689)
...+..++|+|||+.|+.++. ++..
T Consensus 350 ~~~~~~~~~s~dg~~l~~~s~~~~~~ 375 (396)
T 3c5m_A 350 QITHPHPSFTPNDDGVLFTSDFEGVP 375 (396)
T ss_dssp STTCCCCEECTTSSEEEEEECTTSSC
T ss_pred cCCCCCceEccCCCeEEEEecCCCCc
Confidence 002567899999998887664 4444
No 170
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.73 E-value=2.8e-15 Score=157.48 Aligned_cols=261 Identities=10% Similarity=0.027 Sum_probs=174.4
Q ss_pred eEEEEEEcCCCCEEEEEe---------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 15 QIFSIDVQPGALRFATGG---------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs---------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
.+....+ ||++++... .++.|.+||+.. ++ ...+ ..+.+++|+|||++|+..+
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~-----------~~-~~~l----~~~~~~~~SpDg~~la~~~ 77 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKN-----------NA-RRFI----ENATMPRISPDGKKIAFMR 77 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTT-----------CC-EEEE----ESCEEEEECTTSSEEEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCC-----------Cc-eEEc----ccCCCeEECCCCCEEEEEE
Confidence 6888888 999887752 256799999875 22 2233 4678999999999999887
Q ss_pred CC---C--eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--------------
Q 040062 86 DD---Q--VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-------------- 146 (689)
Q Consensus 86 ~D---g--~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-------------- 146 (689)
.+ + .|.+|++.++ +...... +.. +..++|+||++.|+.++.+
T Consensus 78 ~~~~~~~~~l~~~~~~~g-----------------~~~~l~~-~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 78 ANEEKKVSEIWVADLETL-----------------SSKKILE-AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp EETTTTEEEEEEEETTTT-----------------EEEEEEE-ESE-EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred eccCCCcceEEEEECCCC-----------------ceEEEEc-CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 54 3 3777777765 3333333 333 9999999999988887643
Q ss_pred -------------CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCC-------eEEEEECCCCcceeecc
Q 040062 147 -------------NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK-------TVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 147 -------------g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg-------~I~iwd~~~~~~~~~~~ 206 (689)
..|++||+.+++.+..+.. . .+..+.|+|+| +++++..+. ...||.+++++.. .+.
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~ 214 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEE-KMF 214 (347)
T ss_dssp CC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEE-EEE
T ss_pred eeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceE-Eec
Confidence 5799999998887455554 3 78899999999 777776542 3445544444332 222
Q ss_pred CcccccCCcccEEEEEEcCCCCeEEEecCCCC----CccccceeecCCceeeeeecCCCCCEEE-EEEcCCccccccccc
Q 040062 207 GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK----PRHSAPVLERGEWAATFDFLGHNAPIIV-VKFNHSMFRRNSASS 281 (689)
Q Consensus 207 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~----~~~~~~i~~~~~~~~~~~l~~h~~~v~~-v~fsp~~~~~~~~~~ 281 (689)
.. ..+.. ++|+|++|+....... ....+.+++ .........+|...+.. +.|+ +
T Consensus 215 ~~-------~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-d--------- 273 (347)
T 2gop_A 215 EK-------VSFYA--VDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-G--------- 273 (347)
T ss_dssp EE-------ESEEE--EEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-T---------
T ss_pred cC-------cceee--ECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-C---------
Confidence 21 11333 3999999887764332 123444555 22222223345566664 6776 4
Q ss_pred cccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcE
Q 040062 282 QEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTV 361 (689)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I 361 (689)
+ ++++++.++.++|| +.+++..... . +...|.+++|+| .++++++.++..
T Consensus 274 ------------------------g-~~~~~~~~~~~~l~-~~~g~~~~~~-~-~~~~v~~~~~s~--~~~~~~~~~~~~ 323 (347)
T 2gop_A 274 ------------------------K-VYFTLFEEGSVNLY-IWDGEIKPIA-K-GRHWIMGFDVDE--IVVYLKETATRL 323 (347)
T ss_dssp ------------------------E-EEEEEEETTEEEEE-EESSSEEEEE-C-SSSEEEEEEESS--SEEEEEECSSSC
T ss_pred ------------------------c-EEEEEecCCcEEEE-EcCCceEEEe-c-CCCeEEeeeeeC--cEEEEEcCCCCh
Confidence 2 78888999999999 8755543333 2 367799999999 677777777765
Q ss_pred -EEEEee
Q 040062 362 -ANFHFE 367 (689)
Q Consensus 362 -~vwd~~ 367 (689)
.+|.++
T Consensus 324 ~~l~~~~ 330 (347)
T 2gop_A 324 RELFTWD 330 (347)
T ss_dssp CEEEEES
T ss_pred HHheEeC
Confidence 888876
No 171
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.71 E-value=1.7e-14 Score=147.23 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=170.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec------CCCCcEEEEEE-cCCCCEEEEEeC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR------DHFGSVNCVRW-AKHGRYIASGSD 86 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~f-spdg~~Lasgs~ 86 (689)
..+.+++++++|+++++...++.|++||... +.+..+. +|...+.++++ .++++++++...
T Consensus 30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g------------~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~ 97 (286)
T 1q7f_A 30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKEG------------RFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS 97 (286)
T ss_dssp SCEEEEEECTTCCEEEEEGGGTEEEEECTTS------------CEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG
T ss_pred CCCceEEECCCCCEEEEECCCCEEEEECCCC------------cEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC
Confidence 4789999999999888888899999999763 3333332 34567899999 577777766643
Q ss_pred -CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 87 -DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 87 -Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
++.|.+|+.. + +....+. .+...+.+++++++++++++...++.|.+||. +++.+..+.
T Consensus 98 ~~~~i~~~d~~-g-----------------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~ 158 (286)
T 1q7f_A 98 PTHQIQIYNQY-G-----------------QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFG 158 (286)
T ss_dssp GGCEEEEECTT-S-----------------CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEE
T ss_pred CCCEEEEECCC-C-----------------cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeC
Confidence 7899999943 3 2333343 34467899999999998888778899999996 456666654
Q ss_pred --cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 165 --GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 165 --~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.+...+.+|+++++|+++++...++.|++||... +.+..+..
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~----------------------------------- 202 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG-QYLRQIGG----------------------------------- 202 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC-CEEEEESC-----------------------------------
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC-CEEEEEcc-----------------------------------
Confidence 3456789999999999888877889999999742 22221110
Q ss_pred cceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC-cEEEE
Q 040062 243 APVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR-TITVW 321 (689)
Q Consensus 243 ~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg-~I~iw 321 (689)
.++......+++++++ +++++...++ .|.+|
T Consensus 203 ---------------~g~~~~p~~i~~d~~G---------------------------------~l~v~~~~~~~~i~~~ 234 (286)
T 1q7f_A 203 ---------------EGITNYPIGVGINSNG---------------------------------EILIADNHNNFNLTIF 234 (286)
T ss_dssp ---------------TTTSCSEEEEEECTTC---------------------------------CEEEEECSSSCEEEEE
T ss_pred ---------------CCccCCCcEEEECCCC---------------------------------CEEEEeCCCCEEEEEE
Confidence 0112345667777765 6777776675 89999
Q ss_pred eCCCCCceEEeccc-CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 322 TTASPRPLFVAKHF-FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 322 d~~~~~~~~~~~~~-h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
|. .++.+..+... ....+.+++++|+|+++++ +.|+.|++|++..
T Consensus 235 ~~-~g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 235 TQ-DGQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp CT-TSCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred CC-CCCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 95 45555554432 1234789999999986666 6799999999754
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=5.7e-16 Score=178.07 Aligned_cols=297 Identities=11% Similarity=-0.027 Sum_probs=180.9
Q ss_pred eeeecCceEEEEEEcCCCCEEEEE--eCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEE---------EEEEc-
Q 040062 8 WVRHEGMQIFSIDVQPGALRFATG--GGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN---------CVRWA- 75 (689)
Q Consensus 8 ~~~H~g~~I~si~~spdg~~Latg--s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~---------~v~fs- 75 (689)
+.+|. ..|.+++|++++-+++.. +.++...||.... ......+..|...+. ..+|+
T Consensus 19 ~~~~~-~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 86 (662)
T 3azo_A 19 VASRS-GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRA-----------DGAEESALPAPWNVRNRVFEYSGFPWAGVP 86 (662)
T ss_dssp HHHTC-SCCEEEEEETTEEEEEEEETTTTTEEEEEEECT-----------TSCEEESSCTTCCBCCCGGGTCCCCEEEEC
T ss_pred HhhcC-CccceeEEcCCeEEEEecCcccCCcEEEEEECC-----------CCCcceeCCCCccccccccccCCccceeee
Confidence 44566 589999999887777777 5588999999643 233445555655555 56666
Q ss_pred -CCCCE-EEEEeC-CCeEEEEEcC--C-CCCccccCCCCCCCcccceEEEEEec-----CCCCEEEEEEcCCCCEEEEEe
Q 040062 76 -KHGRY-IASGSD-DQVILIHEKK--P-GSGTTEFGSGEPPDIENWKVAMTLRG-----HTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 76 -pdg~~-Lasgs~-Dg~I~iwdl~--~-~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~l~~spdg~~Lasgs 144 (689)
|||++ |+.++. +..|.+|++. . +. ...+.. |...+.+++|+|||+.|++++
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~------------------~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~ 148 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAV------------------PRPLTPVSAVGGGLRWADPVLLPERGEVWCMA 148 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCC------------------CEECSCCCCSTTCEEEEEEEEETTTTEEEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCC------------------CEeccCCccCCCCccccCcEECCCCCEEEEEE
Confidence 99998 776654 4566666665 2 31 122333 566789999999999999988
Q ss_pred CC----------CeEEEEEcCC------CeEEEEEe-cCCCCeEEEEEccCCCEEEEEeCC--------CeEEEEECC-C
Q 040062 145 LD----------NTIHIWNMST------GICTAVLR-GHSSLVKGVAWDPIGSFIASQSDD--------KTVIIWRTS-D 198 (689)
Q Consensus 145 ~D----------g~I~vwd~~~------~~~~~~l~-~h~~~V~~l~~spdg~~las~s~D--------g~I~iwd~~-~ 198 (689)
.| ..|++||+.+ ++.. .+. .+...+..++|+|||++|+.++.+ ..|++||+. +
T Consensus 149 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~ 227 (662)
T 3azo_A 149 EEFTGEGPSDVRRFLAAVPLDGSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTED 227 (662)
T ss_dssp EEECSSSTTCEEEEEEEEETTSTTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred ecccCCCCCCceeEEEEEECCCCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence 77 5899999987 5543 444 556778889999999999987754 379999998 5
Q ss_pred C---cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccc
Q 040062 199 W---SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFR 275 (689)
Q Consensus 199 ~---~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~ 275 (689)
+ +.......+ ...+..+.|+|||++++++...+ ...+..++....... .+..+...+....|+++.
T Consensus 228 g~~~~~~~l~~~~------~~~~~~~~~spdg~l~~~~~~~~--~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~-- 296 (662)
T 3azo_A 228 GRFADTRTLLGGP------EEAIAQAEWAPDGSLIVATDRTG--WWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGM-- 296 (662)
T ss_dssp SCEEEEEEEEEET------TBCEEEEEECTTSCEEEEECTTS--SCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTC--
T ss_pred CcccccEEeCCCC------CceEcceEECCCCeEEEEECCCC--CeEEEEEECCCCcee-ecccccccccCccccccC--
Confidence 6 333222221 12378899999999655554322 223444443222221 121122111111111110
Q ss_pred cccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEE--eCCCCCceEEecccCCCCeEEE-EEccCCCeE
Q 040062 276 RNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVW--TTASPRPLFVAKHFFTQSVVDL-SWSPDGYSL 352 (689)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iw--d~~~~~~~~~~~~~h~~~V~~l-~~spdg~~L 352 (689)
....+++++.+++++.. +.++|| |+.+++ +..+. .|...+..+ +++.+.-++
T Consensus 297 ----------------------~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~ 351 (662)
T 3azo_A 297 ----------------------RWFAPLANGLIAVVHGK-GAAVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVG 351 (662)
T ss_dssp ----------------------CSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEE
T ss_pred ----------------------ceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEE
Confidence 00112334588899888 999999 555444 44443 345567666 444333334
Q ss_pred EEEeCCCcEEEEE--eecccc
Q 040062 353 FACSLDGTVANFH--FEVKEL 371 (689)
Q Consensus 353 ~sgs~DG~I~vwd--~~~~~l 371 (689)
++++.+....+|. +.++++
T Consensus 352 ~~~~~~~~~~i~~~d~~~g~~ 372 (662)
T 3azo_A 352 VAASPRTAYEVVELDTVTGRA 372 (662)
T ss_dssp EEEETTEEEEEEEEETTTCCE
T ss_pred EEcCCCCCCEEEEEECCCCce
Confidence 4456565555554 445543
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.70 E-value=2.6e-15 Score=174.98 Aligned_cols=298 Identities=10% Similarity=0.009 Sum_probs=179.5
Q ss_pred EEEEEcCCCCEEEEEeCC---------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC
Q 040062 17 FSIDVQPGALRFATGGGD---------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD 87 (689)
Q Consensus 17 ~si~~spdg~~Latgs~D---------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D 87 (689)
..+.|||||++|+.++.+ +.+.|||+.+ ++ +..+..|.+.+..++|||||+.||.+. |
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~-----------~~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~ 131 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNK-----------RQ-LITEERIPNNTQWVTWSPVGHKLAYVW-N 131 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT-----------TE-ECCSSCCCTTEEEEEECSSTTCEEEEE-T
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCC-----------Cc-EEEcccCCCcceeeEECCCCCEEEEEE-C
Confidence 447899999999998875 5677999986 33 445677888999999999999999985 6
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC---------CCEEEEEEcCCCCEEEEEeCCC-----------
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT---------ADVVDLNWSPDDSILASGSLDN----------- 147 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~---------~~V~~l~~spdg~~Lasgs~Dg----------- 147 (689)
+.|.+|++.++........+. ....+.++. .....+.|||||++||.++.|.
T Consensus 132 ~~i~~~~~~~~~~~~lt~~g~--------~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~ 203 (740)
T 4a5s_A 132 NDIYVKIEPNLPSYRITWTGK--------EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFY 203 (740)
T ss_dssp TEEEEESSTTSCCEECCSCCB--------TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEEC
T ss_pred CeEEEEECCCCceEEEcCCCC--------ccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEee
Confidence 899999998764211100000 000111222 1223589999999999875332
Q ss_pred -------------------------eEEEEEcCC---Ce--EEEEEe------cCCCCeEEEEEccCCCEEEEEeC----
Q 040062 148 -------------------------TIHIWNMST---GI--CTAVLR------GHSSLVKGVAWDPIGSFIASQSD---- 187 (689)
Q Consensus 148 -------------------------~I~vwd~~~---~~--~~~~l~------~h~~~V~~l~~spdg~~las~s~---- 187 (689)
.|++||+.+ ++ ....+. +|...+..++|+|||++++....
T Consensus 204 ~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~ 283 (740)
T 4a5s_A 204 SDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQN 283 (740)
T ss_dssp CSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTT
T ss_pred cCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCC
Confidence 588899988 73 233343 37788999999999997665532
Q ss_pred CCeEEEEECCCCc----ceee--c--cCcccccCCcccEEEEEEcCCCCeEE-EecCCCCCccccceeecCCceeeeeec
Q 040062 188 DKTVIIWRTSDWS----LAHR--T--DGHWAKSLGSTFFRRLGWSPCGHFIT-TTHGFQKPRHSAPVLERGEWAATFDFL 258 (689)
Q Consensus 188 Dg~I~iwd~~~~~----~~~~--~--~~~~~~~~~~~~i~~l~~spdg~~l~-~~~~~~~~~~~~~i~~~~~~~~~~~l~ 258 (689)
+..|++||+.+++ +... + ..+... ..........|+|||+.|+ ..+..+ ....+.+++....... .+.
T Consensus 284 ~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~-v~~~~~~~p~fspDG~~l~~~~s~~~-G~~~l~~~~~~~~~~~-~lT 360 (740)
T 4a5s_A 284 YSVMDICDYDESSGRWNCLVARQHIEMSTTGW-VGRFRPSEPHFTLDGNSFYKIISNEE-GYRHICYFQIDKKDCT-FIT 360 (740)
T ss_dssp EEEEEEEEEETTTTEEEECGGGCEEEECSSSC-SSSSSCCCCEECTTSSEEEEEEECTT-SCEEEEEEETTCSSCE-ESC
T ss_pred EEEEEEEECCCCccccceeEEEEeeeccCCce-EccCcCCCceEcCCCCEEEEEEEcCC-CceEEEEEECCCCceE-ecc
Confidence 3479999998877 2211 1 111111 0000023578999999887 443322 2345556665443322 222
Q ss_pred CCCCCEEEEE-EcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC----CC--cEEEEeCCCCCceEE
Q 040062 259 GHNAPIIVVK-FNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----DR--TITVWTTASPRPLFV 331 (689)
Q Consensus 259 ~h~~~v~~v~-fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----Dg--~I~iwd~~~~~~~~~ 331 (689)
.....+..+. ++ + +.+++++.. .+ .|+..++..+.....
T Consensus 361 ~g~~~v~~~~~~d--~--------------------------------~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~ 406 (740)
T 4a5s_A 361 KGTWEVIGIEALT--S--------------------------------DYLYYISNEYKGMPGGRNLYKIQLIDYTKVTC 406 (740)
T ss_dssp CSSSCEEEEEEEC--S--------------------------------SEEEEEESCGGGCTTCBEEEEEETTEEEEEEE
T ss_pred cCCEEEEEEEEEe--C--------------------------------CEEEEEEecCCCCCceeEEEEEECCCCCccee
Confidence 2233343332 32 2 134445544 23 344445544333222
Q ss_pred ecc---cCCCCeEEEEEccCCCeEEEEeCC---CcEEEEEeeccccc
Q 040062 332 AKH---FFTQSVVDLSWSPDGYSLFACSLD---GTVANFHFEVKELG 372 (689)
Q Consensus 332 ~~~---~h~~~V~~l~~spdg~~L~sgs~D---G~I~vwd~~~~~l~ 372 (689)
+.. ........+.||||+++++..... ..+.+++..+++..
T Consensus 407 lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~ 453 (740)
T 4a5s_A 407 LSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGL 453 (740)
T ss_dssp SSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEE
T ss_pred eccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 221 123568899999999987765433 35777777655443
No 174
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.69 E-value=8.7e-15 Score=152.93 Aligned_cols=278 Identities=9% Similarity=0.030 Sum_probs=188.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|.++.|++++..++..+.++.++.|. .+....+..+...+.+++|+++|++++++..++.|.+||
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d 72 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISESELQTIT--------------AEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKIN 72 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCGGGSCEEE--------------CEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEEC
T ss_pred ccceeeecCCccceeEEeecccCcccc--------------cceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEe
Confidence 588899999998888778888999993 345566667777889999999999888888899999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEEEcCCCeEEEEEe--cCCC
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD----NTIHIWNMSTGICTAVLR--GHSS 168 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D----g~I~vwd~~~~~~~~~l~--~h~~ 168 (689)
.+++ +.......+...+.+++|+++++++++...+ +.|.+||..++.....+. .+..
T Consensus 73 ~~~~-----------------~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 73 PETK-----------------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp TTTC-----------------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CCCC-----------------cEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 8876 2333333466789999999999988777666 689999998876654443 2456
Q ss_pred CeEEEEEccCCCEEEEEeC------CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccc
Q 040062 169 LVKGVAWDPIGSFIASQSD------DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHS 242 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~ 242 (689)
.+.+++++|+|+++++... .+.|..||..+++...... . ......++|+|+|+.++.+... ...
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~------~~~~~~i~~~~dg~~l~v~~~~---~~~ 205 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N------ISVANGIALSTDEKVLWVTETT---ANR 205 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E------ESSEEEEEECTTSSEEEEEEGG---GTE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-C------CCcccceEECCCCCEEEEEeCC---CCe
Confidence 7899999999988877654 2456666655444332211 1 1236789999999977665432 223
Q ss_pred cceeecCC---ceee------eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 243 APVLERGE---WAAT------FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 243 ~~i~~~~~---~~~~------~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
+.+++... .... ..+.++ ..+..+++++++ +++++..
T Consensus 206 i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G---------------------------------~l~v~~~ 251 (333)
T 2dg1_A 206 LHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDD---------------------------------NLYVAMY 251 (333)
T ss_dssp EEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTC---------------------------------CEEEEEE
T ss_pred EEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCC---------------------------------CEEEEEc
Confidence 44554421 1100 111111 244556665554 7777777
Q ss_pred CCCcEEEEeCCCCCceEEecccC-----CCCeEEEEEccCCCeEEEEeCCC----cEEEEEeec
Q 040062 314 QDRTITVWTTASPRPLFVAKHFF-----TQSVVDLSWSPDGYSLFACSLDG----TVANFHFEV 368 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~spdg~~L~sgs~DG----~I~vwd~~~ 368 (689)
.++.|.+||. .++.+..+.... ...+.+++|++|++.|++++.++ .-.||.++.
T Consensus 252 ~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~ 314 (333)
T 2dg1_A 252 GQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNG 314 (333)
T ss_dssp TTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEEC
T ss_pred CCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEec
Confidence 7899999998 455555543221 11689999999988887766553 344555543
No 175
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.66 E-value=1.2e-12 Score=133.72 Aligned_cols=281 Identities=10% Similarity=-0.017 Sum_probs=188.3
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..+.++.++++|+++++...++.|.+||... ......+..+...+.+++++++|.++++...++.|..|
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~ 83 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLDG-----------KITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRI 83 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-----------CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCCC-----------CeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEE
Confidence 4799999999999888766678999999762 11111222345679999999999988887778899999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE-EecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV-LRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~-l~~h~~~V~~ 172 (689)
+.... .....+......+..+++.+++.++++...++.|.+||. +++.... +..+...+.+
T Consensus 84 ~~~g~-----------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~ 145 (299)
T 2z2n_A 84 TKKGI-----------------IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSF 145 (299)
T ss_dssp CTTSC-----------------EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred CCCCc-----------------EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCce
Confidence 87521 111122234567899999999988887777889999998 5554433 2334567899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
++++++++++++...++.|..||. +++.... ... .....+..++++++|+..++.... ..+..++.....
T Consensus 146 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~----~~~~~~~~i~~~~~g~l~v~~~~~----~~i~~~~~~g~~ 215 (299)
T 2z2n_A 146 ITLGSDNALWFTENQNNAIGRITE-SGDITEF-KIP----TPASGPVGITKGNDDALWFVEIIG----NKIGRITTSGEI 215 (299)
T ss_dssp EEECTTSCEEEEETTTTEEEEECT-TCCEEEE-ECS----STTCCEEEEEECTTSSEEEEETTT----TEEEEECTTCCE
T ss_pred EEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEe-eCC----CCCCcceeEEECCCCCEEEEccCC----ceEEEECCCCcE
Confidence 999999988887777789999998 6554432 111 112347889999999876665332 234444442111
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
..+.+..+...+..+++.+++ +++++...++.|.+||. +++ +..+
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~g---------------------------------~l~v~~~~~~~i~~~d~-~g~-~~~~ 260 (299)
T 2z2n_A 216 TEFKIPTPNARPHAITAGAGI---------------------------------DLWFTEWGANKIGRLTS-NNI-IEEY 260 (299)
T ss_dssp EEEECSSTTCCEEEEEECSTT---------------------------------CEEEEETTTTEEEEEET-TTE-EEEE
T ss_pred EEEECCCCCCCceeEEECCCC---------------------------------CEEEeccCCceEEEECC-CCc-eEEE
Confidence 222233445667778887765 66666557789999998 343 2232
Q ss_pred -cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccc
Q 040062 333 -KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKE 370 (689)
Q Consensus 333 -~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~ 370 (689)
...+...+.++++ ++|+++++.+ .+.|..++.++++
T Consensus 261 ~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 261 PIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN 297 (299)
T ss_dssp ECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred eCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence 2233467899999 8887666655 6777778876543
No 176
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.65 E-value=2.4e-14 Score=166.04 Aligned_cols=248 Identities=11% Similarity=0.032 Sum_probs=171.5
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQ-----VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS 138 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg-----~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~ 138 (689)
+|...+..++|||||++||.+..++ .|++||+.++ +.......+ ..+..++|+|||+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg-----------------~~~~~~~~~-~~~~~~~wspDg~ 183 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA-----------------KELPDVLER-VKFSCMAWTHDGK 183 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT-----------------EEEEEEEEE-ECSCCEEECTTSS
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC-----------------CCCcccccC-cccceEEEEeCCC
Confidence 3545789999999999999876643 8999999987 333322222 2367899999999
Q ss_pred EEEEEeCCCe----------------EEEEEcCCCeE--EEEEe--cCCCCeEEEEEccCCCEEEEEeC-----CCeEEE
Q 040062 139 ILASGSLDNT----------------IHIWNMSTGIC--TAVLR--GHSSLVKGVAWDPIGSFIASQSD-----DKTVII 193 (689)
Q Consensus 139 ~Lasgs~Dg~----------------I~vwd~~~~~~--~~~l~--~h~~~V~~l~~spdg~~las~s~-----Dg~I~i 193 (689)
.|+.++.++. |++|++.+++. ...+. .|...+..+.|+|||++|+..+. +..|++
T Consensus 184 ~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~ 263 (710)
T 2xdw_A 184 GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWY 263 (710)
T ss_dssp EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEE
T ss_pred EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEE
Confidence 9999888766 99999988752 22233 34566889999999999988764 568999
Q ss_pred EECCC------Cc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce--eeeeecCCCC--
Q 040062 194 WRTSD------WS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA--ATFDFLGHNA-- 262 (689)
Q Consensus 194 wd~~~------~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~h~~-- 262 (689)
||+.+ +. ....+..+... .. ..|+++|..|+..+..+.....+.+++..... ....+..|..
T Consensus 264 ~d~~~~~~~~~~~~~~~~l~~~~~~------~~-~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~ 336 (710)
T 2xdw_A 264 CDLQQESNGITGILKWVKLIDNFEG------EY-DYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD 336 (710)
T ss_dssp EEGGGSSSSSCSSCCCEEEECSSSS------CE-EEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred EECcccccccCCccceEEeeCCCCc------EE-EEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence 99976 42 23333333221 22 25889999888876655545566677665432 1123444443
Q ss_pred CEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCc--EEEEeCCCCCceEEecccCCCCe
Q 040062 263 PIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRT--ITVWTTASPRPLFVAKHFFTQSV 340 (689)
Q Consensus 263 ~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~--I~iwd~~~~~~~~~~~~~h~~~V 340 (689)
.+..+.|++++ .++++...|+. |++||+.+++.+..+.. +...+
T Consensus 337 ~~~~~~~~~~~---------------------------------~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~-~~~~v 382 (710)
T 2xdw_A 337 VLEWVACVRSN---------------------------------FLVLCYLHDVKNTLQLHDLATGALLKIFPL-EVGSV 382 (710)
T ss_dssp EEEEEEEETTT---------------------------------EEEEEEEETTEEEEEEEETTTCCEEEEECC-CSSEE
T ss_pred eEEEEEEEcCC---------------------------------EEEEEEEECCEEEEEEEECCCCCEEEecCC-CCceE
Confidence 56677777543 67888888874 66677767776665543 46778
Q ss_pred EEEEEccCCCeEEEE-e---CCCcEEEEEeeccc
Q 040062 341 VDLSWSPDGYSLFAC-S---LDGTVANFHFEVKE 370 (689)
Q Consensus 341 ~~l~~spdg~~L~sg-s---~DG~I~vwd~~~~~ 370 (689)
..++++|++..|+.. + ..+.|++||+.+++
T Consensus 383 ~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 383 VGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 899999999766643 2 35789999988766
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.64 E-value=3.8e-15 Score=171.17 Aligned_cols=286 Identities=10% Similarity=0.002 Sum_probs=187.7
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEE--eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEE-------
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASG--SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVV------- 129 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasg--s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~------- 129 (689)
...+.+|...|..++|++++-++++. +.++...||....+. ....+..|...+.
T Consensus 16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------~~~~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-----------------AEESALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-----------------CEEESSCTTCCBCCCGGGTC
T ss_pred HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-----------------CcceeCCCCccccccccccC
Confidence 34566789999999999887777777 668899999974431 2344455555555
Q ss_pred --EEEEc--CCCCE-EEEEeC-CCeEEEEEcC--CCeEEEEEec-----CCCCeEEEEEccCCCEEEEEeCC--------
Q 040062 130 --DLNWS--PDDSI-LASGSL-DNTIHIWNMS--TGICTAVLRG-----HSSLVKGVAWDPIGSFIASQSDD-------- 188 (689)
Q Consensus 130 --~l~~s--pdg~~-Lasgs~-Dg~I~vwd~~--~~~~~~~l~~-----h~~~V~~l~~spdg~~las~s~D-------- 188 (689)
...|+ ||++. |+.++. +..|.+|++. .......+.. |...+..++|+|||++|++++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSD 158 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCC
Confidence 55565 99998 776654 5677777775 2033444554 56778899999999999998876
Q ss_pred --CeEEEEECCC------CcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC----CccccceeecC-Cc---e
Q 040062 189 --KTVIIWRTSD------WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK----PRHSAPVLERG-EW---A 252 (689)
Q Consensus 189 --g~I~iwd~~~------~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~----~~~~~~i~~~~-~~---~ 252 (689)
..|++||+.+ +......... ...+..+.|||||++|+....... ....+.+++.. .. .
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~ 232 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSAVRELSDDA------HRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFAD 232 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGGSEESSCSC------SSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEE
T ss_pred ceeEEEEEECCCCccccCCceeEEEecC------CCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccc
Confidence 5899999987 4443322021 124677899999999987764332 12356677665 33 2
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC--cEEEEeCCCCCceE
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR--TITVWTTASPRPLF 330 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg--~I~iwd~~~~~~~~ 330 (689)
......+|...+..+.|+|++ ++++++..++ .|++||+.+++...
T Consensus 233 ~~~l~~~~~~~~~~~~~spdg---------------------------------~l~~~~~~~~~~~l~~~~~~~~~~~~ 279 (662)
T 3azo_A 233 TRTLLGGPEEAIAQAEWAPDG---------------------------------SLIVATDRTGWWNLHRVDPATGAATQ 279 (662)
T ss_dssp EEEEEEETTBCEEEEEECTTS---------------------------------CEEEEECTTSSCEEEEECTTTCCEEE
T ss_pred cEEeCCCCCceEcceEECCCC---------------------------------eEEEEECCCCCeEEEEEECCCCceee
Confidence 333334457888999999987 6778888888 56667766665433
Q ss_pred EecccCCCC--------eEEEEEccCCCeEEEEeCCCcEEEEEee--ccccccccChHHHHHHHHhccCCccCceeee-e
Q 040062 331 VAKHFFTQS--------VVDLSWSPDGYSLFACSLDGTVANFHFE--VKELGHRLSDAELDELKRSRYGDVRGRLANL-A 399 (689)
Q Consensus 331 ~~~~~h~~~--------V~~l~~spdg~~L~sgs~DG~I~vwd~~--~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l-~ 399 (689)
.. ..+... +.+++|+++++++++++. +.++||.++ ++++ ..+ ..+.+.+..+ +
T Consensus 280 l~-~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~-~~l-------------~~~~~~~~~~~s 343 (662)
T 3azo_A 280 LC-RREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGEL-VDA-------------AGPWTEWAATLT 343 (662)
T ss_dssp SS-CCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEE-EEC-------------CSSCCEEEEEEE
T ss_pred cc-cccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcE-EEe-------------cCCCCeEEEEEe
Confidence 22 222222 567899999999999998 999999655 3432 222 2234456665 4
Q ss_pred cCchhhhhHhhccccce
Q 040062 400 ETPAQLLLEAASAKETT 416 (689)
Q Consensus 400 ~Spdg~~Las~s~DG~v 416 (689)
++.+..++++++.+...
T Consensus 344 ~~~~~~~~~~~~~~~~~ 360 (662)
T 3azo_A 344 VSGTRAVGVAASPRTAY 360 (662)
T ss_dssp EETTEEEEEEEETTEEE
T ss_pred cCCCEEEEEEcCCCCCC
Confidence 44444444455555443
No 178
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.64 E-value=5.7e-13 Score=149.08 Aligned_cols=312 Identities=13% Similarity=0.062 Sum_probs=209.6
Q ss_pred CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC--CCCC
Q 040062 23 PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKK--PGSG 100 (689)
Q Consensus 23 pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~--~~~~ 100 (689)
+.+.++++...++.|.+||..+ .+.+.++... ..+.++.|+|||++|++++.|+.|.+||+. +.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t-----------~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~-- 230 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGST-----------YEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP-- 230 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTT-----------CCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC--
T ss_pred CCceEEEEeCCCCeEEEEECCC-----------CeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC--
Confidence 4455667777889999999987 6777777643 357799999999999999999999999995 44
Q ss_pred ccccCCCCCCCcccceEEEEEecCCCCEEEEEEc----CCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecC---------
Q 040062 101 TTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS----PDDSILASGS-LDNTIHIWNMSTGICTAVLRGH--------- 166 (689)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s----pdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h--------- 166 (689)
+.+..+... .....++|+ |||++++++. .++.|.|+|..+.+.+..+...
T Consensus 231 ---------------~~v~~i~~G-~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~ 294 (567)
T 1qks_A 231 ---------------TTVAEIKIG-SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEY 294 (567)
T ss_dssp ---------------CEEEEEECC-SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred ---------------cEeEEEecC-CCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccc
Confidence 455555543 346899999 6999887766 5589999999999998877532
Q ss_pred --CCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcccc
Q 040062 167 --SSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 167 --~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~ 243 (689)
...+..+.+++++. +++....+|.|.++|..+.+........ ...+...+.|+|+|+++++++.. ...+
T Consensus 295 ~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-----~~~~~~d~~~~pdgr~~~va~~~---sn~V 366 (567)
T 1qks_A 295 HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-----AERFLHDGGLDGSHRYFITAANA---RNKL 366 (567)
T ss_dssp ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-----CCSSEEEEEECTTSCEEEEEEGG---GTEE
T ss_pred cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeee-----ccccccCceECCCCCEEEEEeCC---CCeE
Confidence 22678888888765 4555567799999998765432221111 12246788999999999887643 3445
Q ss_pred ceeecCCceeeeeec-----CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CCCc
Q 040062 244 PVLERGEWAATFDFL-----GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDRT 317 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~-----~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg~ 317 (689)
.+++..+.+....+. .|.+.-..+ ++|++ +.+++++. .++.
T Consensus 367 ~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~--------------------------------g~v~~t~~~g~~~ 413 (567)
T 1qks_A 367 VVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTF--------------------------------GPVWATSHMGDDS 413 (567)
T ss_dssp EEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTT--------------------------------EEEEEEEBSSSSE
T ss_pred EEEECCCCcEEEEEeccCcCCCCccceee-ECCCC--------------------------------CcEEEeCCCCCCe
Confidence 567766554332221 122111111 34432 24555554 4689
Q ss_pred EEEEeCCC-------CCceEEecccCCCCeEEEEEccCCCeEEEEeC-------CCcEEEEEeecccc-----c-cccCh
Q 040062 318 ITVWTTAS-------PRPLFVAKHFFTQSVVDLSWSPDGYSLFACSL-------DGTVANFHFEVKEL-----G-HRLSD 377 (689)
Q Consensus 318 I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~-------DG~I~vwd~~~~~l-----~-~~l~~ 377 (689)
|.++|+.+ .+.+..+... ...-..+..+|++++|++... .++|.|||+.+.++ . ..+..
T Consensus 414 Vsvid~~~~~~~~~~~kvv~~i~~~-g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~ 492 (567)
T 1qks_A 414 VALIGTDPEGHPDNAWKILDSFPAL-GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPI 492 (567)
T ss_dssp EEEEECCTTTCTTTBTSEEEEEECS-CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECH
T ss_pred EEEecCCCCCCccccCEEEEEEecC-CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEecc
Confidence 99999987 4455555532 233345778999999998763 45999999987622 1 22222
Q ss_pred HHHHHHHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 378 AELDELKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 378 ~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
.++.. .+....++..+.|++||..|..+.
T Consensus 493 ~~~~~-----~~~~~~~~~~~~~~~~G~~~~~s~ 521 (567)
T 1qks_A 493 AEWAG-----ITEGQPRVVQGEFNKDGTEVWFSV 521 (567)
T ss_dssp HHHHT-----CCSSCCEEEEEEECTTSSEEEEEE
T ss_pred ccccc-----cCCCCcceEeeeECCCCCEEEEEe
Confidence 22211 122234789999999998887664
No 179
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.63 E-value=3.3e-14 Score=149.27 Aligned_cols=254 Identities=11% Similarity=0.078 Sum_probs=165.9
Q ss_pred CcEEEEEEcCCCCEEEEEe---------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCC
Q 040062 67 GSVNCVRWAKHGRYIASGS---------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs---------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg 137 (689)
..+..++| ||++|+... .++.|.+|++.++. . ..+ ..+..++|||||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~-----------------~-~~l----~~~~~~~~SpDg 70 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA-----------------R-RFI----ENATMPRISPDG 70 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC-----------------E-EEE----ESCEEEEECTTS
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc-----------------e-EEc----ccCCCeEECCCC
Confidence 45677788 899887653 25679999988762 1 222 458899999999
Q ss_pred CEEEEEeCC---C--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC------------------------
Q 040062 138 SILASGSLD---N--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD------------------------ 188 (689)
Q Consensus 138 ~~Lasgs~D---g--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D------------------------ 188 (689)
++|+.++.+ + .|.+||+.+++.......+ . +..++|+|||+.|+.++.+
T Consensus 71 ~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 148 (347)
T 2gop_A 71 KKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFD 148 (347)
T ss_dssp SEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------CCCC--------
T ss_pred CEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCccccc
Confidence 999887754 2 4888899888776665544 3 9999999999988887632
Q ss_pred ---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC----C-ccccceeecCCceeeeeecCC
Q 040062 189 ---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK----P-RHSAPVLERGEWAATFDFLGH 260 (689)
Q Consensus 189 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~----~-~~~~~i~~~~~~~~~~~l~~h 260 (689)
..|++||+.+++.+..+... .+..+.|+|+| .++++..... . ...+..++ .... ..+..+
T Consensus 149 ~~~~~l~~~d~~~~~~~~~l~~~--------~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l~~~ 216 (347)
T 2gop_A 149 GEKTTFWIFDTESEEVIEEFEKP--------RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKE-EKMFEK 216 (347)
T ss_dssp -CEEEEEEEETTTTEEEEEEEEE--------TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEE-EEEEEE
T ss_pred CccceEEEEECCCCeEEeeecCC--------CcccccCCCCe-EEEEEecccccccccccccEEEeC--CCce-EEeccC
Confidence 57999999887763443321 26788999999 6666543221 1 22233333 1111 112122
Q ss_pred CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCC--------CcEEEEeCCCCCceEEe
Q 040062 261 NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQD--------RTITVWTTASPRPLFVA 332 (689)
Q Consensus 261 ~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~D--------g~I~iwd~~~~~~~~~~ 332 (689)
..+..+ +|+ ++.|+.++.+ ..|.+|| +++. ..+
T Consensus 217 -~~~~~~--spd---------------------------------g~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-~~l 257 (347)
T 2gop_A 217 -VSFYAV--DSD---------------------------------GERILLYGKPEKKYMSEHNKLYIYD--GKEV-MGI 257 (347)
T ss_dssp -ESEEEE--EEC---------------------------------SSCEEEEECCSSSCCCSSCEEEEEC--SSCE-EES
T ss_pred -cceeeE--CCC---------------------------------CCEEEEEEccccCCccccceEEEEC--CCce-Eec
Confidence 222222 444 4667666644 3688888 4443 344
Q ss_pred cccCCCCeEE-EEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 333 KHFFTQSVVD-LSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 333 ~~~h~~~V~~-l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
...+...+.. +.|+ |+ ++++++.++.++|| +.+++.. .... +.+.|.+++|++ .++++++
T Consensus 258 ~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~-------------~~~~-~~~~v~~~~~s~--~~~~~~~ 318 (347)
T 2gop_A 258 LDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK-------------PIAK-GRHWIMGFDVDE--IVVYLKE 318 (347)
T ss_dssp STTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE-------------EEEC-SSSEEEEEEESS--SEEEEEE
T ss_pred cccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE-------------EEec-CCCeEEeeeeeC--cEEEEEc
Confidence 4445667886 9999 98 88999999999999 8854332 1111 245689999999 5666666
Q ss_pred cccce
Q 040062 412 AKETT 416 (689)
Q Consensus 412 ~DG~v 416 (689)
.++..
T Consensus 319 ~~~~~ 323 (347)
T 2gop_A 319 TATRL 323 (347)
T ss_dssp CSSSC
T ss_pred CCCCh
Confidence 66654
No 180
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.63 E-value=9.6e-13 Score=147.23 Aligned_cols=295 Identities=11% Similarity=0.085 Sum_probs=197.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCC--cCCCCCCCCcccceeeeeecCCCCcEEEEEEc----CCCCEEEEEeC-
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMK--SVGKNFENDESTQRLLATLRDHFGSVNCVRWA----KHGRYIASGSD- 86 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~--~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs----pdg~~Lasgs~- 86 (689)
..+.++.|+|||++|++++.|+.|.+||+. + .+.+.++.... ....++|+ |||++++++..
T Consensus 197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t-----------~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~ 264 (567)
T 1qks_A 197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKE-----------PTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYW 264 (567)
T ss_dssp SCEEEEEECTTSCEEEEEETTSEEEEEETTSSS-----------CCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEE
T ss_pred CCccceEECCCCCEEEEEcCCCeEEEEECCCCC-----------CcEeEEEecCC-CCceeEEccccCCCCCEEEEEEcc
Confidence 467899999999999999999999999995 4 46666666433 35789999 69998887765
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec----------C-CCCEEEEEEcCCCCE-EEEEeCCCeEEEEEc
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG----------H-TADVVDLNWSPDDSI-LASGSLDNTIHIWNM 154 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~----------h-~~~V~~l~~spdg~~-Lasgs~Dg~I~vwd~ 154 (689)
++.|.|+|..+.. .+..+.. | ...+..+.+++++.. ++....+|.|.++|.
T Consensus 265 ~~~v~ViD~~t~~-----------------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~ 327 (567)
T 1qks_A 265 PPQYVIMDGETLE-----------------PKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 327 (567)
T ss_dssp TTEEEEEETTTCC-----------------EEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCc-----------------EEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEec
Confidence 5899999987763 3333321 2 226788999988764 445556799999999
Q ss_pred CCCeEE--EEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCCCcceeeccC-cccccCCcccEEEEEEcCCCCeE
Q 040062 155 STGICT--AVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSDWSLAHRTDG-HWAKSLGSTFFRRLGWSPCGHFI 230 (689)
Q Consensus 155 ~~~~~~--~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~~l 230 (689)
.+...+ ..+. ......++.|+|++++|+++. .++.|.++|+.+++++..+.. ......+.. .. .++|++..+
T Consensus 328 ~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g-~~--~~~p~~g~v 403 (567)
T 1qks_A 328 TDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG-AN--FVHPTFGPV 403 (567)
T ss_dssp TCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC-EE--EEETTTEEE
T ss_pred CCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccc-ee--eECCCCCcE
Confidence 775432 2332 445677899999999987766 567999999999988776654 222211111 11 257875555
Q ss_pred EEecCCCCCccccceeecCC-------ceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccC
Q 040062 231 TTTHGFQKPRHSAPVLERGE-------WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKES 303 (689)
Q Consensus 231 ~~~~~~~~~~~~~~i~~~~~-------~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 303 (689)
.++...+ ...+.+++... |+....+......-..+.++|+
T Consensus 404 ~~t~~~g--~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~------------------------------- 450 (567)
T 1qks_A 404 WATSHMG--DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPN------------------------------- 450 (567)
T ss_dssp EEEEBSS--SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTT-------------------------------
T ss_pred EEeCCCC--CCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCC-------------------------------
Confidence 5433211 23455665544 4444443332222223444444
Q ss_pred CCCcEEEEEeC-------CCcEEEEeCCCC-----Cce-EEecc-------cCCCCeEEEEEccCCCeEEEEeC-----C
Q 040062 304 QPYNVIAIGSQ-------DRTITVWTTASP-----RPL-FVAKH-------FFTQSVVDLSWSPDGYSLFACSL-----D 358 (689)
Q Consensus 304 ~~~~~lasgs~-------Dg~I~iwd~~~~-----~~~-~~~~~-------~h~~~V~~l~~spdg~~L~sgs~-----D 358 (689)
++++.+... .++|.+||+.+. ... ..+.. .....+.++.|+++|++|.++.+ +
T Consensus 451 --~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~ 528 (567)
T 1qks_A 451 --SQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQE 528 (567)
T ss_dssp --CSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSC
T ss_pred --CCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCC
Confidence 467776553 358999999876 222 23321 11457899999999999888743 7
Q ss_pred CcEEEEEeeccccccccC
Q 040062 359 GTVANFHFEVKELGHRLS 376 (689)
Q Consensus 359 G~I~vwd~~~~~l~~~l~ 376 (689)
+.|.|+|..+.++...+.
T Consensus 529 ~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 529 SALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CEEEEEETTTTEEEEEEC
T ss_pred CcEEEEECCCceEEEEeC
Confidence 999999999988776554
No 181
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.61 E-value=4.5e-14 Score=147.45 Aligned_cols=282 Identities=9% Similarity=-0.003 Sum_probs=186.2
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
..|.+++|++++..++..+.++.++.|. + .....+..+...+.+++|++++++++++..+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-----------------~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 65 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---A-----------------EPWLEISKKGLQLEGLNFDRQGQLFLLDVFE 65 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---C-----------------EEEEEEESSCCCEEEEEECTTSCEEEEETTT
T ss_pred cccceeeecCCccceeEEeecccCcccc---c-----------------ceeEEEeccCccccCcEECCCCCEEEEECCC
Confidence 3467788999888777777888888882 2 4556677777788999999999988888889
Q ss_pred CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 147 NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD----KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
+.|.+||..+++.......+...+.+++|+++++++++...+ +.|.+||..++.....+... .....+..+.
T Consensus 66 ~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~----~~~~~~~~i~ 141 (333)
T 2dg1_A 66 GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDL----STAYCIDDMV 141 (333)
T ss_dssp CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSS----SSCCCEEEEE
T ss_pred CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccC----ccCCcccceE
Confidence 999999998887766554567889999999999988877766 68999999877654333211 1123488999
Q ss_pred EcCCCCeEEEecCCCC--CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 223 WSPCGHFITTTHGFQK--PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
++|+|+.+++...... ....+..++....... .+..+......++|+|++
T Consensus 142 ~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg--------------------------- 193 (333)
T 2dg1_A 142 FDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDE--------------------------- 193 (333)
T ss_dssp ECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTS---------------------------
T ss_pred ECCCCCEEEEeccccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCC---------------------------
Confidence 9999988776543111 1122333333221111 111122345667777765
Q ss_pred ccCCCCcEE-EEEeCCCcEEEEeCCC-CCceEEe-----ccc-CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 301 KESQPYNVI-AIGSQDRTITVWTTAS-PRPLFVA-----KHF-FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 301 ~~s~~~~~l-asgs~Dg~I~iwd~~~-~~~~~~~-----~~~-h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
+.| ++...++.|.+||+.. +..+..+ ... ....+..++++++|+++++...++.|.+|+.+ ++..
T Consensus 194 ------~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~ 266 (333)
T 2dg1_A 194 ------KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPI 266 (333)
T ss_dssp ------SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEE
T ss_pred ------CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEE
Confidence 544 4555678999999964 3333211 111 11367889999999988887778999999974 4333
Q ss_pred cccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhcccc
Q 040062 373 HRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKE 414 (689)
Q Consensus 373 ~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG 414 (689)
..+... .....+...+.+++|++|+..|..++.+|
T Consensus 267 ~~~~~~-------~~~~g~~~~~~~~~~~~dg~~L~v~~~~g 301 (333)
T 2dg1_A 267 GQILIP-------GRDEGHMLRSTHPQFIPGTNQLIICSNDI 301 (333)
T ss_dssp EEEECT-------TGGGTCSCBCCEEEECTTSCEEEEEEECG
T ss_pred EEEEcC-------CCccccccCcceEEECCCCCEEEEEeCcc
Confidence 222100 00001122588999999987676555554
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.60 E-value=3e-14 Score=164.81 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=177.3
Q ss_pred cCCCCEEEEEeCCC---eEEEEeCCcCCCCCCCCcccceeeeee----cCCCCcEEEEEEcCCCCEEEE-----EeCCCe
Q 040062 22 QPGALRFATGGGDH---KVRIWNMKSVGKNFENDESTQRLLATL----RDHFGSVNCVRWAKHGRYIAS-----GSDDQV 89 (689)
Q Consensus 22 spdg~~Latgs~Dg---~V~IWd~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~v~fspdg~~Las-----gs~Dg~ 89 (689)
+|+|++++....++ .-.||-..... ...+.+... .+|...+.+++|||||++||. |+++..
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~-------~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~ 148 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGES-------GQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAV 148 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTT-------SCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCC-------CCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEE
Confidence 37898888776543 35556543210 011222211 245567999999999999994 444578
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCE--EEEEEcCCCCEEEEEeCCCe-------------EEEEEc
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADV--VDLNWSPDDSILASGSLDNT-------------IHIWNM 154 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V--~~l~~spdg~~Lasgs~Dg~-------------I~vwd~ 154 (689)
|++||+.++.... ..+...+ ..++|+|||+.|+.++.|.. |++|++
T Consensus 149 i~v~dl~tg~~~~-------------------~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l 209 (695)
T 2bkl_A 149 LHVIDVDSGEWSK-------------------VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTL 209 (695)
T ss_dssp EEEEETTTCCBCS-------------------SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEET
T ss_pred EEEEECCCCCCcC-------------------CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEEC
Confidence 9999999874210 0111112 67899999999999998776 999999
Q ss_pred CCCe----EEEEEecCCCCeEEEEEccCCCEEEEEeCCC----eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCC
Q 040062 155 STGI----CTAVLRGHSSLVKGVAWDPIGSFIASQSDDK----TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPC 226 (689)
Q Consensus 155 ~~~~----~~~~l~~h~~~V~~l~~spdg~~las~s~Dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spd 226 (689)
.++. ++.....|...+.++.|+|||++|+..+.++ .|.+|+..++.... +..+.. ......| ++
T Consensus 210 ~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~------~~~~~~~-~~ 281 (695)
T 2bkl_A 210 GTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVG------AKYEVHA-WK 281 (695)
T ss_dssp TSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSS------CCEEEEE-ET
T ss_pred CCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCC------ceEEEEe-cC
Confidence 8875 3333344556889999999999988877665 67777655444332 222211 1334445 56
Q ss_pred CCeEEEecCCCCCccccceeecCCcee--eeeecCC--CCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 227 GHFITTTHGFQKPRHSAPVLERGEWAA--TFDFLGH--NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 227 g~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~h--~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
|. ++.....+.....+..++...... ...+..| ...+..+.|+ +
T Consensus 282 g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~------------------------------ 329 (695)
T 2bkl_A 282 DR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-G------------------------------ 329 (695)
T ss_dssp TE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-T------------------------------
T ss_pred Cc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-C------------------------------
Confidence 66 555544333445566666544321 1222323 3456666765 2
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCCeEEEEe----CCCcEEEEEeecccc
Q 040062 303 SQPYNVIAIGSQDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS----LDGTVANFHFEVKEL 371 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs----~DG~I~vwd~~~~~l 371 (689)
+.++++...|+..+||.+. .++.+..+...+...+..++++|++..|+... ..++|++||+.+++.
T Consensus 330 ---~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 330 ---GHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp ---TEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred ---CEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2688888999988888665 34444444433356688899999998777432 357899999987653
No 183
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.60 E-value=1.5e-13 Score=145.80 Aligned_cols=265 Identities=11% Similarity=0.047 Sum_probs=183.2
Q ss_pred EEEEcCCCCEEEEEeC----------CCeEEEEeCCcCCCCCCCCcccceeeeeecCC------CCcEEEEEEcCCCCEE
Q 040062 18 SIDVQPGALRFATGGG----------DHKVRIWNMKSVGKNFENDESTQRLLATLRDH------FGSVNCVRWAKHGRYI 81 (689)
Q Consensus 18 si~~spdg~~Latgs~----------Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h------~~~V~~v~fspdg~~L 81 (689)
.++|+|||++|+++.. ++.|.+||..+ .+.+.++..+ ......++|+|||++|
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t-----------~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l 122 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK-----------LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFI 122 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT-----------CCEEEEEEECTTBCCBCCCGGGEEECTTSSEE
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC-----------CcEEEEEEcCccccccCCCcceEEECCCCCEE
Confidence 8999999999998862 57899999876 4555555422 2345679999999999
Q ss_pred EEEeC--CCeEEEEEcCCCCCccccCCCCCCCcccceEEEE-EecCCCCEEEEEEcCCC-CEEEEEeCCCeEEEEEcCC-
Q 040062 82 ASGSD--DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT-LRGHTADVVDLNWSPDD-SILASGSLDNTIHIWNMST- 156 (689)
Q Consensus 82 asgs~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd~~~- 156 (689)
+++.. ++.|.+||+.++ +.+.. +. +. ....+.+.|++ ..+++.+.||.+.+|+...
T Consensus 123 ~v~n~~~~~~v~v~d~~~~-----------------~~~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~ 183 (361)
T 2oiz_A 123 VLQNASPATSIGIVDVAKG-----------------DYVEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGED 183 (361)
T ss_dssp EEEEESSSEEEEEEETTTT-----------------EEEEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTT
T ss_pred EEECCCCCCeEEEEECCCC-----------------cEEEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCC
Confidence 98864 589999999987 45555 33 22 23335677776 5788889999999999865
Q ss_pred CeEEEEE------ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcce--eeccCccc--ccCC--cccEEEEEEc
Q 040062 157 GICTAVL------RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLA--HRTDGHWA--KSLG--STFFRRLGWS 224 (689)
Q Consensus 157 ~~~~~~l------~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~--~~~~~~~~--~~~~--~~~i~~l~~s 224 (689)
++..... ..+..++ .+.+.+++..++..+.++.|.++|+...... ..+..... .... ......++|+
T Consensus 184 g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~ 262 (361)
T 2oiz_A 184 GKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLH 262 (361)
T ss_dssp SSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEE
T ss_pred CcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEe
Confidence 5544222 1122222 3445677878888888999999999754322 11110000 0000 0001236899
Q ss_pred CCCCeEEEecCCC-------CCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccc
Q 040062 225 PCGHFITTTHGFQ-------KPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSK 297 (689)
Q Consensus 225 pdg~~l~~~~~~~-------~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (689)
|+++.++++...+ .....+.+|+..+.+....+..+. ...++|+|++
T Consensus 263 ~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg------------------------ 316 (361)
T 2oiz_A 263 RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQR------------------------ 316 (361)
T ss_dssp TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTT------------------------
T ss_pred cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCC------------------------
Confidence 9999888765411 123467788988888877777776 8999999987
Q ss_pred ccCccCCCCcEEEEEeCCCcEEEEeCCCC--CceEEecccCCCCeEEEEEccCCC
Q 040062 298 IGGKESQPYNVIAIGSQDRTITVWTTASP--RPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 298 ~~~~~s~~~~~lasgs~Dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
++|++++. +.|.+||..++ +.+..+. .+......++++|||.
T Consensus 317 ---------~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 317 ---------NLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp ---------TEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred ---------CEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 67887776 99999999999 7777653 2467789999999986
No 184
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=1.3e-13 Score=144.21 Aligned_cols=250 Identities=12% Similarity=0.109 Sum_probs=176.3
Q ss_pred CCCcEEEEEEcCCCCEEEEEeCC------------------------CeEEEEEcCCCCCccccCCCCCCCcccceEEEE
Q 040062 65 HFGSVNCVRWAKHGRYIASGSDD------------------------QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT 120 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Lasgs~D------------------------g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (689)
-.+.+.+|+++++|+++++...+ +.|.+||..++ +....
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g-----------------~~~~~ 84 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA-----------------EILQS 84 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC-----------------CEEEE
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC-----------------eEEec
Confidence 34679999999999999988877 46899988776 33333
Q ss_pred Ee-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-EEEEE---------ecCCCCeEEEEEcc-CCCEEEEEe-C
Q 040062 121 LR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-CTAVL---------RGHSSLVKGVAWDP-IGSFIASQS-D 187 (689)
Q Consensus 121 l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-dg~~las~s-~ 187 (689)
+. ++-.....++++++++++++...++.|++||..... .+..+ ..+.....+|+|+| ++.++++.+ .
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~ 164 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYC 164 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSS
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCC
Confidence 33 344678999999999988888889999999985442 45555 23455789999999 788888876 6
Q ss_pred CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEE
Q 040062 188 DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVV 267 (689)
Q Consensus 188 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v 267 (689)
++.|++||. ++..+..+..... + .. ...++-.....+
T Consensus 165 ~~~I~~~~~-~g~~~~~~~~~g~----------------~----------~~----------------~~~~~~~~p~gi 201 (329)
T 3fvz_A 165 NSRIVQFSP-SGKFVTQWGEESS----------------G----------SS----------------PRPGQFSVPHSL 201 (329)
T ss_dssp CCEEEEECT-TSCEEEEECEECC----------------S----------SS----------------CCTTEESCEEEE
T ss_pred CCeEEEEcC-CCCEEEEeccCCC----------------C----------CC----------------CCCcccCCCcEE
Confidence 889999984 4444333221100 0 00 000112345778
Q ss_pred EEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEc
Q 040062 268 KFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWS 346 (689)
Q Consensus 268 ~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s 346 (689)
+++|++ +.++++...++.|++||..+++.+..+.. .+...+.+++|+
T Consensus 202 a~d~~~--------------------------------g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~ 249 (329)
T 3fvz_A 202 ALVPHL--------------------------------DQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI 249 (329)
T ss_dssp EEETTT--------------------------------TEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE
T ss_pred EEECCC--------------------------------CEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeec
Confidence 888762 26778888889999999998888777643 345678899999
Q ss_pred c------CCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 347 P------DGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 347 p------dg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
| +|+.+++...+..|++|++.++++...+.. ...+......++++|||.++++...++.|
T Consensus 250 pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~----------~~~~~~~p~~ia~~~dG~lyvad~~~~~I 315 (329)
T 3fvz_A 250 PGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP----------VRKHFDMPHDIVASEDGTVYIGDAHTNTV 315 (329)
T ss_dssp TTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC----------SSSCCSSEEEEEECTTSEEEEEESSSCCE
T ss_pred CCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC----------CCCccCCeeEEEECCCCCEEEEECCCCEE
Confidence 9 333333334456899999988887654321 01344468999999999988888889988
No 185
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.59 E-value=7e-13 Score=136.07 Aligned_cols=241 Identities=14% Similarity=0.100 Sum_probs=165.4
Q ss_pred ceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
....++.|+|+|+ +++++..++.|.+||... . ...+..+...+.+++|+++|+++++...++.|.+
T Consensus 28 ~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~-----------~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 28 TWTEGPVYVPARSAVIFSDVRQNRTWAWSDDG-----------Q--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp SSEEEEEEEGGGTEEEEEEGGGTEEEEEETTS-----------C--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred ccccCCeEeCCCCEEEEEeCCCCEEEEEECCC-----------C--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 4678999999998 777888889999999875 3 5556667788999999999998888777889999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEE-EEec-CCCCEEEEEEcCCCCEEEEE----e-------------CCCeEEEEE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAM-TLRG-HTADVVDLNWSPDDSILASG----S-------------LDNTIHIWN 153 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~l~~spdg~~Lasg----s-------------~Dg~I~vwd 153 (689)
||..++.. .... .... ....+.+++++++|+++++. . ..+.|..++
T Consensus 95 ~d~~~g~~---------------~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 95 QREPGGEW---------------ESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp ECSTTCCE---------------EEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EcCCCCcE---------------EEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEEC
Confidence 99876631 1111 1111 12356789999999988873 2 134677776
Q ss_pred cCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC-CCcceeeccCcccccCCcccEEEEEEcCCCCeEEE
Q 040062 154 MSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS-DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 154 ~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~ 232 (689)
.. ++ +..+..+.....+++|+|++++|++.+.++.|.+|++. ++..... ..+ +
T Consensus 160 ~~-g~-~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~--------------~~~-~--------- 213 (296)
T 3e5z_A 160 PD-GT-LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQ--------------GVH-F--------- 213 (296)
T ss_dssp TT-SC-EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEE--------------EEE-E---------
T ss_pred CC-CC-EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCC--------------CeE-e---------
Confidence 65 44 34445567778999999999988777778899999986 3222000 000 0
Q ss_pred ecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 233 THGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
..+...+..+++++++ +++++.
T Consensus 214 -------------------------~~~~~~p~~i~~d~~G---------------------------------~l~v~~ 235 (296)
T 3e5z_A 214 -------------------------TVEPGKTDGLRVDAGG---------------------------------LIWASA 235 (296)
T ss_dssp -------------------------CCSSSCCCSEEEBTTS---------------------------------CEEEEE
T ss_pred -------------------------eCCCCCCCeEEECCCC---------------------------------CEEEEc
Confidence 0011223345666664 555555
Q ss_pred eCCCcEEEEeCCCCCceEEecccCCCCeEEEEE-ccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 313 SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW-SPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 313 s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~-spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
++.|.+||.. ++.+..+.. +.. +.+++| +|+++.|++++.+ .+.-++.+++++.
T Consensus 236 --~~~v~~~~~~-g~~~~~~~~-~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~ 290 (296)
T 3e5z_A 236 --GDGVHVLTPD-GDELGRVLT-PQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE 290 (296)
T ss_dssp --TTEEEEECTT-SCEEEEEEC-SSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred --CCeEEEECCC-CCEEEEEEC-CCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence 7889999986 666665553 344 899999 6899999998876 4545555555543
No 186
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.59 E-value=3.5e-13 Score=135.94 Aligned_cols=241 Identities=9% Similarity=-0.014 Sum_probs=165.3
Q ss_pred eEEEEEEcCCCCEEE-EEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 15 QIFSIDVQPGALRFA-TGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 15 ~I~si~~spdg~~La-tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
...+++++++|++++ +...++.|.+||... .........+...+.+++++++|+++++.. ++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~-----------~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGS-----------TGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC----------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCC-----------cccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEE
Confidence 578999999999777 446788999999764 111111123335678899999999766665 8899999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
|...... ..+. .....+..++++++++++++...++.|.+|+..+.............+.+
T Consensus 93 d~~~~~~------------------~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~ 154 (270)
T 1rwi_B 93 AAGSNNQ------------------TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDG 154 (270)
T ss_dssp CTTCSCC------------------EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCC
T ss_pred eCCCceE------------------eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCcee
Confidence 9875421 1111 22356899999999997777777889999987665444333333456789
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
|+++++|+++++...++.|.+||...........
T Consensus 155 i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~---------------------------------------------- 188 (270)
T 1rwi_B 155 VAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF---------------------------------------------- 188 (270)
T ss_dssp EEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC----------------------------------------------
T ss_pred EEEeCCCCEEEEECCCCEEEEEecCCCceEeecc----------------------------------------------
Confidence 9999999977777777899999976533211100
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
.+......+++++++ .++++...++.|.+||........ .
T Consensus 189 ------~~~~~p~~i~~d~~g---------------------------------~l~v~~~~~~~v~~~~~~~~~~~~-~ 228 (270)
T 1rwi_B 189 ------TDITAPWGIAVDEAG---------------------------------TVYVTEHNTNQVVKLLAGSTTSTV-L 228 (270)
T ss_dssp ------SSCCSEEEEEECTTC---------------------------------CEEEEETTTSCEEEECTTCSCCEE-C
T ss_pred ------cCCCCceEEEECCCC---------------------------------CEEEEECCCCcEEEEcCCCCccee-e
Confidence 011234566666654 566666667889999986654333 2
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
...+...+.+++++++|+++++...++.|++|++...+.
T Consensus 229 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 229 PFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp CCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred ccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 222335789999999999888888899999999876554
No 187
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.58 E-value=6.2e-13 Score=135.63 Aligned_cols=240 Identities=15% Similarity=0.120 Sum_probs=166.8
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe------cCCCCEEEEEE-cCC
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR------GHTADVVDLNW-SPD 136 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~l~~-spd 136 (689)
+|...+.+++++++++++++...++.|.+||.+.. ....+. +|...+..+++ .++
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~------------------~~~~~~~~~~~~~~~~~p~~i~~~~~~ 88 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR------------------FKFQFGECGKRDSQLLYPNRVAVVRNS 88 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC------------------EEEEECCBSSSTTCBSSEEEEEEETTT
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc------------------EEEEecccCCCcccccCceEEEEEcCC
Confidence 45567899999999999888888999999997632 333332 24467899999 466
Q ss_pred CCEEEEEeC-CCeEEEEEcCCCeEEEEEec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCC
Q 040062 137 DSILASGSL-DNTIHIWNMSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLG 214 (689)
Q Consensus 137 g~~Lasgs~-Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~ 214 (689)
+.++++... ++.|.+|| .+++.+..+.. +...+.+++++++|+++++...++.|.+||.. ++....+..
T Consensus 89 g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~------- 159 (286)
T 1q7f_A 89 GDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGC------- 159 (286)
T ss_dssp TEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-------
T ss_pred CeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCC-------
Confidence 766666543 89999999 56777776643 44678999999999988887788899999863 222211110
Q ss_pred cccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 215 STFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 215 ~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
..+...+..+++++++
T Consensus 160 -------------------------------------------~~~~~~p~~i~~~~~g--------------------- 175 (286)
T 1q7f_A 160 -------------------------------------------SKHLEFPNGVVVNDKQ--------------------- 175 (286)
T ss_dssp -------------------------------------------TTTCSSEEEEEECSSS---------------------
T ss_pred -------------------------------------------CCccCCcEEEEECCCC---------------------
Confidence 0122345677787765
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEeCCC-cEEEEEeeccccc
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACSLDG-TVANFHFEVKELG 372 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~DG-~I~vwd~~~~~l~ 372 (689)
+++++...++.|++||.. ++.+..+.. .+...+..++++++|+++++...++ .|.+|+.+ ++..
T Consensus 176 ------------~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~ 241 (286)
T 1q7f_A 176 ------------EIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLI 241 (286)
T ss_dssp ------------EEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEE
T ss_pred ------------CEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEE
Confidence 666776778899999974 444444432 2235789999999999888887776 99999954 3333
Q ss_pred cccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccceeeeeee
Q 040062 373 HRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETTTKKVVS 422 (689)
Q Consensus 373 ~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v~~~~~~ 422 (689)
..+. .+.....+..++++|+|.++++ +.|++| +++.
T Consensus 242 ~~~~-----------~~~~~~~~~~i~~~~~g~l~vs-~~~~~v--~v~~ 277 (286)
T 1q7f_A 242 SALE-----------SKVKHAQCFDVALMDDGSVVLA-SKDYRL--YIYR 277 (286)
T ss_dssp EEEE-----------ESSCCSCEEEEEEETTTEEEEE-ETTTEE--EEEE
T ss_pred EEEc-----------ccCCCCcceeEEECCCCcEEEE-CCCCeE--EEEE
Confidence 2221 1112224778999999987777 568888 5554
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.58 E-value=4.5e-13 Score=141.18 Aligned_cols=284 Identities=13% Similarity=0.063 Sum_probs=184.0
Q ss_pred EEEcCCCCEEEEEeC-----CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe--------
Q 040062 19 IDVQPGALRFATGGG-----DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS-------- 85 (689)
Q Consensus 19 i~~spdg~~Latgs~-----Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs-------- 85 (689)
....|+++++++... ++.|.+.|..+ .+.+.++.....+ . ++++|||++|+.+.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t-----------~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~ 104 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEA-----------GRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIAR 104 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTT-----------TEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTE
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCC-----------CeEEEEEECCCCC-c-EEECCCCCEEEEEccccccccc
Confidence 455799999888865 67999999987 7888888755555 4 99999999887765
Q ss_pred --CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCeEEEEEc
Q 040062 86 --DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-------TADVVDLNWSPDDSILASGSL--DNTIHIWNM 154 (689)
Q Consensus 86 --~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~ 154 (689)
.++.|.+||..+. +.+..+.-. ......++|+|||++|+++.. ++.|.++|+
T Consensus 105 G~~~~~VsviD~~t~-----------------~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~ 167 (386)
T 3sjl_D 105 GERTDYVEVFDPVTL-----------------LPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167 (386)
T ss_dssp EEEEEEEEEECTTTC-----------------CEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEET
T ss_pred CCCCCEEEEEECCCC-----------------eEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEEC
Confidence 3678999999987 444444321 124567999999999888864 689999999
Q ss_pred CCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCcccccCCcccEEEEEEc-CCCCeEEE
Q 040062 155 STGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWAKSLGSTFFRRLGWS-PCGHFITT 232 (689)
Q Consensus 155 ~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~i~~l~~s-pdg~~l~~ 232 (689)
.+++.+..+.... . ...+....+.+++.+.||++.+.++.+ ++........+. ......+....|. ++|++++.
T Consensus 168 ~t~~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~~~~~~~~~~~~~~dG~~~~v 243 (386)
T 3sjl_D 168 EGKAFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PEDEFLINHPAYSQKAGRLVWP 243 (386)
T ss_dssp TTTEEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCS-CTTSCBCSCCEEETTTTEEEEE
T ss_pred CCCcEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceec-cccccccccceeEcCCCcEEEE
Confidence 9999999886432 1 223333456777888899999999976 554322211111 1111112234553 67766555
Q ss_pred ecCCCCCccccceeecCCceee----eeec-------C-CCCCEEEEEEcCCccccccccccccccccccccCCcccccC
Q 040062 233 THGFQKPRHSAPVLERGEWAAT----FDFL-------G-HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGG 300 (689)
Q Consensus 233 ~~~~~~~~~~~~i~~~~~~~~~----~~l~-------~-h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (689)
+.. ..+++.+....... +.+. + ..+....+++++
T Consensus 244 s~~-----g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~----------------------------- 289 (386)
T 3sjl_D 244 TYT-----GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR----------------------------- 289 (386)
T ss_dssp BTT-----SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-----------------------------
T ss_pred eCC-----CEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-----------------------------
Confidence 432 22333333221110 0000 0 000111122233
Q ss_pred ccCCCCcEEEEEeC----------CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC-eEEEEe-CCCcEEEEEeec
Q 040062 301 KESQPYNVIAIGSQ----------DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACS-LDGTVANFHFEV 368 (689)
Q Consensus 301 ~~s~~~~~lasgs~----------Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~DG~I~vwd~~~ 368 (689)
+++.++.... .+.|.++|+.+++.+..+... ..+..|.+++|++ +|+++. .++.|.++|..+
T Consensus 290 ----~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t 363 (386)
T 3sjl_D 290 ----ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAES 363 (386)
T ss_dssp ----TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTT
T ss_pred ----CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCC
Confidence 3344444332 257999999999999888763 4688999999997 677754 489999999999
Q ss_pred cccccccC
Q 040062 369 KELGHRLS 376 (689)
Q Consensus 369 ~~l~~~l~ 376 (689)
++....+.
T Consensus 364 ~k~~~~i~ 371 (386)
T 3sjl_D 364 GEELRSVN 371 (386)
T ss_dssp CCEEEEEC
T ss_pred CcEEEEec
Confidence 88876553
No 189
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1e-11 Score=126.77 Aligned_cols=276 Identities=9% Similarity=-0.019 Sum_probs=182.1
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
.+...+.+++++++|+++++...++.|.+||.. +. .....+..+...+.++++++++.++++.
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~----------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 74 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GK----------------ITEYPLPTPDAKVMCLTISSDGEVWFTE 74 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CC----------------EEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CC----------------eEEecCCcccCceeeEEECCCCCEEEeC
Confidence 455679999999999988877768899999987 42 1111222345679999999999988877
Q ss_pred eCCCeEEEEEcCCCeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l 221 (689)
..++.|..||.. ++. ..+. .....+.+++++++++++++...++.|.+||. +++...... . .....+..+
T Consensus 75 ~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~-~----~~~~~~~~i 146 (299)
T 2z2n_A 75 NAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYEL-P----NKGSYPSFI 146 (299)
T ss_dssp TTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEEC-S----STTCCEEEE
T ss_pred CCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecC-C----CCCCCCceE
Confidence 778899999986 333 2232 34567899999999998888777889999998 544332211 1 112347899
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCc
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGK 301 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (689)
+++++|+..++.... ..+..++.......+.+..+...+..+++.+++
T Consensus 147 ~~~~~g~l~v~~~~~----~~i~~~~~~g~~~~~~~~~~~~~~~~i~~~~~g---------------------------- 194 (299)
T 2z2n_A 147 TLGSDNALWFTENQN----NAIGRITESGDITEFKIPTPASGPVGITKGNDD---------------------------- 194 (299)
T ss_dssp EECTTSCEEEEETTT----TEEEEECTTCCEEEEECSSTTCCEEEEEECTTS----------------------------
T ss_pred EEcCCCCEEEEeCCC----CEEEEEcCCCcEEEeeCCCCCCcceeEEECCCC----------------------------
Confidence 999999877765321 233344442111122233334456677776664
Q ss_pred cCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHH
Q 040062 302 ESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELD 381 (689)
Q Consensus 302 ~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~ 381 (689)
.++++...++.|.+||. +++........+...+.+++++++|+++++...++.|.+|+. .+++..
T Consensus 195 -----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~-------- 259 (299)
T 2z2n_A 195 -----ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIEE-------- 259 (299)
T ss_dssp -----SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEEE--------
T ss_pred -----CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceEE--------
Confidence 66666666789999998 665433222223467999999999986666657889999997 343221
Q ss_pred HHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 382 ELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 382 ~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.....+...+.++++ ++|.+.++.+.++.+
T Consensus 260 ----~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~ 289 (299)
T 2z2n_A 260 ----YPIQIKSAEPHGICF-DGETIWFAMECDKIG 289 (299)
T ss_dssp ----EECSSSSCCEEEEEE-CSSCEEEEETTTEEE
T ss_pred ----EeCCCCCCccceEEe-cCCCEEEEecCCcEE
Confidence 111122345889999 888877765544443
No 190
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=2.8e-11 Score=123.47 Aligned_cols=278 Identities=10% Similarity=-0.007 Sum_probs=184.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..+.+|.++++|+++++...++.|.+||... ......+..+...+.++++.++|+++++...++.|..|
T Consensus 20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~-----------~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~ 88 (300)
T 2qc5_A 20 SGPYGITSSEDGKVWFTQHKANKISSLDQSG-----------RIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKL 88 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTS-----------CEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEE
T ss_pred CCcceeeECCCCCEEEEcCCCCeEEEECCCC-----------ceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEE
Confidence 4789999999999888777789999999762 11111223344679999999999988877778889999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE-EecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV-LRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~-l~~h~~~V~~ 172 (689)
|.. +. .....+......+.++++.+++.++++...++.|..||.. ++.... +......+.+
T Consensus 89 d~~-g~----------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~ 150 (300)
T 2qc5_A 89 SKK-GG----------------FTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF 150 (300)
T ss_dssp CTT-SC----------------EEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred CCC-CC----------------eEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence 877 42 1112222234678999999999888777778899999987 555432 2334567899
Q ss_pred EEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCce
Q 040062 173 VAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWA 252 (689)
Q Consensus 173 l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~ 252 (689)
++++++++++++...++.|..||. +++... +... .....+..++++++|+..++.... ..+..++.....
T Consensus 151 i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~----~~~~~~~~i~~d~~g~l~v~~~~~----~~i~~~~~~g~~ 220 (300)
T 2qc5_A 151 ITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLP----TNAAAPVGITSGNDGALWFVEIMG----NKIGRITTTGEI 220 (300)
T ss_dssp EEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECS----STTCCEEEEEECTTSSEEEEETTT----TEEEEECTTCCE
T ss_pred EEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCC----CCCCCcceEEECCCCCEEEEccCC----CEEEEEcCCCcE
Confidence 999999997777666789999998 544432 2111 112347889999999776665331 223444442222
Q ss_pred eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEe
Q 040062 253 ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVA 332 (689)
Q Consensus 253 ~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~ 332 (689)
..+.+..+...+..+++.+++ +++++...++.|..||. +++.....
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g---------------------------------~l~v~~~~~~~i~~~~~-~g~~~~~~ 266 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNS---------------------------------EIWFTEWGANQIGRITN-DNTIQEYQ 266 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTT---------------------------------CEEEEETTTTEEEEECT-TSCEEEEE
T ss_pred EEEECCCCCCCceEEEECCCC---------------------------------CEEEeccCCCeEEEECC-CCcEEEEE
Confidence 222233344566777777665 66666656789999998 44333221
Q ss_pred cccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 333 KHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.......+.+++++++|+++++.. . .|..++.
T Consensus 267 ~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 267 LQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 222345688999999998555444 4 6666654
No 191
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.55 E-value=2.4e-13 Score=158.40 Aligned_cols=286 Identities=12% Similarity=0.051 Sum_probs=177.1
Q ss_pred cCCCCEEEEEeCCC---eEEEEeCCcCCCCCCCCcccceeeee----ecCCCCcEEEEEEcCCCCEEEEEeCC-----Ce
Q 040062 22 QPGALRFATGGGDH---KVRIWNMKSVGKNFENDESTQRLLAT----LRDHFGSVNCVRWAKHGRYIASGSDD-----QV 89 (689)
Q Consensus 22 spdg~~Latgs~Dg---~V~IWd~~~~~~~~~~~~~~~~~~~~----l~~h~~~V~~v~fspdg~~Lasgs~D-----g~ 89 (689)
+|||++++....++ .-.||....... .....+.+.. -.+|...+..++|||||++||.++.+ ..
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~ 190 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAP----VGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRT 190 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSC----TTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEE
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCcc----CCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEE
Confidence 38999888766443 356666543100 0001122111 12344478899999999999987654 46
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCe--------------EEEEEcC
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNT--------------IHIWNMS 155 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~--------------I~vwd~~ 155 (689)
|++||+.++. .+.. ..+...+..++|+|| +.|+.+..|.. |++|++.
T Consensus 191 i~v~dl~tg~-----------------~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lg 251 (741)
T 1yr2_A 191 VKFVGVADGK-----------------PLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLG 251 (741)
T ss_dssp EEEEETTTCC-----------------EEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETT
T ss_pred EEEEECCCCC-----------------CCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECC
Confidence 9999999873 2221 111122357899999 98888876654 8999997
Q ss_pred CCeE--EEEEe--cCCCCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCC--cceeeccCcccccCCcccEEEEEEc
Q 040062 156 TGIC--TAVLR--GHSSLVKGVAWDPIGSFIASQSDDK-----TVIIWRTSDW--SLAHRTDGHWAKSLGSTFFRRLGWS 224 (689)
Q Consensus 156 ~~~~--~~~l~--~h~~~V~~l~~spdg~~las~s~Dg-----~I~iwd~~~~--~~~~~~~~~~~~~~~~~~i~~l~~s 224 (689)
++.. ...+. .+...+..+.|+|||++|+..+.++ .|++||+.++ +....+...... .... ++
T Consensus 252 t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------~~~~-~~ 324 (741)
T 1yr2_A 252 TPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA------QWDF-VD 324 (741)
T ss_dssp SCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS------CEEE-EE
T ss_pred CCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc------eEEE-Ee
Confidence 7652 22333 2334688999999999988877543 8999999876 313333322211 2223 34
Q ss_pred CCCCeEEEecCCCCCccccceeecCCc--eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 225 PCGHFITTTHGFQKPRHSAPVLERGEW--AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 225 pdg~~l~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
++|..|+.....+.....+..++.... .....+..+...+..+.+..
T Consensus 325 ~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~~------------------------------- 373 (741)
T 1yr2_A 325 GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIAG------------------------------- 373 (741)
T ss_dssp EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEEB-------------------------------
T ss_pred ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEEC-------------------------------
Confidence 899988887765554556666665442 12222333444455566652
Q ss_pred CCCCcEEEEEeCCCcEEEEeCC-CCCceEEecccCCCCeEEEEEccCCCeEEEE----eCCCcEEEEEeecccc
Q 040062 303 SQPYNVIAIGSQDRTITVWTTA-SPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC----SLDGTVANFHFEVKEL 371 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg----s~DG~I~vwd~~~~~l 371 (689)
+.++++...|+..+||.+. .++....+...+...+..+.++||+..|+.. ...++|++||+.+++.
T Consensus 374 ---~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 ---NRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp ---TEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred ---CEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 2678888889887777554 3444444443335678899999999876643 2357899999887663
No 192
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.55 E-value=1.9e-12 Score=131.66 Aligned_cols=231 Identities=12% Similarity=0.012 Sum_probs=167.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCcc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTT 102 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~ 102 (689)
.+++|++++.|+.|++||.++ ++.+.++..+. ..+.++.++|+|++|+ +.++.|..||. ++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~t-----------G~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G---- 65 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDT-----------KEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG---- 65 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTT-----------TEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS----
T ss_pred CCcEEEeeCCCCEEEEEECCC-----------CeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC----
Confidence 467899999999999999976 78888888776 4789999999999988 45778999998 55
Q ss_pred ccCCCCCCCcccceEEEEEecC-CCCEEEEEEcCCCCEEEEEeC-CCeEEEEEcCCCeEEEEEec------CCCCeEEEE
Q 040062 103 EFGSGEPPDIENWKVAMTLRGH-TADVVDLNWSPDDSILASGSL-DNTIHIWNMSTGICTAVLRG------HSSLVKGVA 174 (689)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~Lasgs~-Dg~I~vwd~~~~~~~~~l~~------h~~~V~~l~ 174 (689)
+.+..+..+ ...+.++.+.+||++|++.+. ++.|..+|. +++.+..+.. +......++
T Consensus 66 -------------~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~ 131 (276)
T 3no2_A 66 -------------RELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQIN 131 (276)
T ss_dssp -------------CEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCE
T ss_pred -------------CEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCce
Confidence 455555544 346889999999999999887 788888886 7877776652 212445677
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
+.++|++|++...++.|..||.. ++.+.++....
T Consensus 132 ~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~--------------------------------------------- 165 (276)
T 3no2_A 132 KNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSG--------------------------------------------- 165 (276)
T ss_dssp ECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSS---------------------------------------------
T ss_pred ECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCC---------------------------------------------
Confidence 89999999999999999999987 77766654321
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH 334 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 334 (689)
....+.+.++ +++++++..++.|..||..+++.+..+..
T Consensus 166 --------~~~~~~~~~~---------------------------------g~~~v~~~~~~~v~~~d~~tG~~~w~~~~ 204 (276)
T 3no2_A 166 --------TPFSSAFLDN---------------------------------GDCLVACGDAHCFVQLNLESNRIVRRVNA 204 (276)
T ss_dssp --------CCCEEEECTT---------------------------------SCEEEECBTTSEEEEECTTTCCEEEEEEG
T ss_pred --------CccceeEcCC---------------------------------CCEEEEeCCCCeEEEEeCcCCcEEEEecC
Confidence 0111223333 36777777777888888888888877753
Q ss_pred cC-----CCCeEEEEEccCCCeEEEEeCC--------CcEEEEEe-ecccccc
Q 040062 335 FF-----TQSVVDLSWSPDGYSLFACSLD--------GTVANFHF-EVKELGH 373 (689)
Q Consensus 335 ~h-----~~~V~~l~~spdg~~L~sgs~D--------G~I~vwd~-~~~~l~~ 373 (689)
.. ...+..+...++|.++++.... +..+++++ ..+++..
T Consensus 205 ~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W 257 (276)
T 3no2_A 205 NDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVW 257 (276)
T ss_dssp GGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEE
T ss_pred CCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEE
Confidence 11 1237888888999888776421 23456666 3455543
No 193
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.53 E-value=1.8e-11 Score=130.05 Aligned_cols=290 Identities=9% Similarity=-0.074 Sum_probs=176.8
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe---------
Q 040062 20 DVQPGALRFATGGG--DH---KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS--------- 85 (689)
Q Consensus 20 ~~spdg~~Latgs~--Dg---~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs--------- 85 (689)
...|++.++.+... .. .|.+||..+ .+.+.++.....+ .++|+|||++|+.+.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t-----------~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg 93 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGS-----------GSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKG 93 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCC-----------CeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccC
Confidence 44578888877754 22 889999987 6677777654444 999999999998885
Q ss_pred -CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCeEEEEEcC
Q 040062 86 -DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-------TADVVDLNWSPDDSILASGSL--DNTIHIWNMS 155 (689)
Q Consensus 86 -~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~~ 155 (689)
.++.|.+||..+.. .+..+.-. ......++|+|||++|+++.. ++.|.++| .
T Consensus 94 ~~~~~v~viD~~t~~-----------------~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~ 155 (373)
T 2mad_H 94 KRTDYVEVFDPVTFL-----------------PIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q 155 (373)
T ss_pred CCCCeEEEEECCCCc-----------------EEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C
Confidence 36789999998763 33322211 123458999999999998874 57899999 9
Q ss_pred CCeEEEE-EecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 156 TGICTAV-LRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 156 ~~~~~~~-l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+++.+.. +... . ++.+.|++ +.+++.+.||.+.+||. +++......................+.+++..++..
T Consensus 156 t~~~~~~~i~~~-~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 230 (373)
T 2mad_H 156 GGSSDDQLLSSP-T---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWP 230 (373)
T ss_pred CCCEEeEEcCCC-c---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEE
Confidence 9988877 5532 2 24555655 45667778999999999 777663322100000111112334566665544433
Q ss_pred cCCCCCccccceeecCCce--eeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 234 HGFQKPRHSAPVLERGEWA--ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~--~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
... ..+.+++..... ....+.-.........|.|.+... ...+++++.+++
T Consensus 231 ~~~----~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~-----------------------~~~s~d~~~lyV 283 (373)
T 2mad_H 231 VYS----GKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQ-----------------------VAYLKSSDGIYL 283 (373)
T ss_pred cCC----ceEEEEeccCCcceEeeeeeecCCcccccceecCceEe-----------------------EEECCCCCEEEE
Confidence 221 123333332111 000010000000111122221000 011223355555
Q ss_pred EeC----------CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC-eEEEEe-CCCcEEEEEeeccccccc
Q 040062 312 GSQ----------DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACS-LDGTVANFHFEVKELGHR 374 (689)
Q Consensus 312 gs~----------Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~DG~I~vwd~~~~~l~~~ 374 (689)
... ++.|.++|+.+.+.+..+.. .....+++|+|||+ +|+++. .++.|.+||+.+++....
T Consensus 284 ~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 284 LTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred EeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 432 35799999999999888764 44689999999999 788877 489999999998887654
No 194
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=6.2e-12 Score=131.37 Aligned_cols=266 Identities=11% Similarity=0.021 Sum_probs=178.8
Q ss_pred CCeEEEEeCCcCCCCCCCCcccceeeeeec------CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCC
Q 040062 34 DHKVRIWNMKSVGKNFENDESTQRLLATLR------DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSG 107 (689)
Q Consensus 34 Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~ 107 (689)
++.|.+||.++ ++....+. ........+.+. +++++++...++.|.+||..++
T Consensus 16 ~~~l~~~d~~t-----------~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~--------- 74 (328)
T 3dsm_A 16 NATLSYYDPAT-----------CEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF--------- 74 (328)
T ss_dssp CBEEEEEETTT-----------TEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---------
T ss_pred CceEEEEECCC-----------CEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc---------
Confidence 78999999986 34333321 122346778875 4556666667899999999987
Q ss_pred CCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-----CCeEEEEEccCCCEE
Q 040062 108 EPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS-----SLVKGVAWDPIGSFI 182 (689)
Q Consensus 108 ~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~-----~~V~~l~~spdg~~l 182 (689)
+.+..+. .......+++++++..+++...++.|.+||+.+++....+.... .....|++ ++..|
T Consensus 75 --------~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~l 143 (328)
T 3dsm_A 75 --------KEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYV 143 (328)
T ss_dssp --------CEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEE
T ss_pred --------EEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEE
Confidence 4555554 34678999999888544444489999999999999887776433 14567787 34455
Q ss_pred EEEe--CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC------ccccceeecCCceee
Q 040062 183 ASQS--DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP------RHSAPVLERGEWAAT 254 (689)
Q Consensus 183 as~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~------~~~~~i~~~~~~~~~ 254 (689)
+.+. .++.|.+||+.+++.+..+.... ....+.++++|++++++.+.... ...+.+++..+....
T Consensus 144 yv~~~~~~~~v~viD~~t~~~~~~i~~g~-------~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~ 216 (328)
T 3dsm_A 144 YVNCWSYQNRILKIDTETDKVVDELTIGI-------QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE 216 (328)
T ss_dssp EEEECTTCCEEEEEETTTTEEEEEEECSS-------CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE
T ss_pred EEEcCCCCCEEEEEECCCCeEEEEEEcCC-------CccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE
Confidence 5554 48899999999988877765422 14578899999977776543111 245667776655443
Q ss_pred eeecCC-CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE-e
Q 040062 255 FDFLGH-NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV-A 332 (689)
Q Consensus 255 ~~l~~h-~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~-~ 332 (689)
..+... ......++|+|++ +.|+++.. .|.+||..+++.... +
T Consensus 217 ~~~~~~~g~~p~~la~~~d~---------------------------------~~lyv~~~--~v~~~d~~t~~~~~~~~ 261 (328)
T 3dsm_A 217 KQFKFKLGDWPSEVQLNGTR---------------------------------DTLYWINN--DIWRMPVEADRVPVRPF 261 (328)
T ss_dssp EEEECCTTCCCEEEEECTTS---------------------------------CEEEEESS--SEEEEETTCSSCCSSCS
T ss_pred EEEecCCCCCceeEEEecCC---------------------------------CEEEEEcc--EEEEEECCCCceeeeee
Confidence 333221 2357788888875 56666544 899999988775321 1
Q ss_pred cccCCCCeEEEEEccCCCeE-EEE----eCCCcEEEEEeeccccccc
Q 040062 333 KHFFTQSVVDLSWSPDGYSL-FAC----SLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 333 ~~~h~~~V~~l~~spdg~~L-~sg----s~DG~I~vwd~~~~~l~~~ 374 (689)
..........++++|++..| ++. ..++.|.+||.+ +++...
T Consensus 262 ~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 262 LEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp BCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred ecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 11114568999999955444 444 568999999987 665543
No 195
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.52 E-value=2.4e-12 Score=149.26 Aligned_cols=249 Identities=8% Similarity=0.005 Sum_probs=165.5
Q ss_pred eEEEEEEcCCCCEEEEEeCCC-----eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 15 QIFSIDVQPGALRFATGGGDH-----KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg-----~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
.+.+++|||||++||.+..++ .|++||+.+ ++.+.....+ ..+..++|+|||+.|+.++.++.
T Consensus 126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t-----------g~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG-----------AKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT-----------TEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCC
T ss_pred EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC-----------CCCCcccccC-cccceEEEEeCCCEEEEEEECCc
Confidence 688999999999999876543 899999986 4444322212 22567999999999999988766
Q ss_pred ----------------EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-----CCe
Q 040062 90 ----------------ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-----DNT 148 (689)
Q Consensus 90 ----------------I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-----Dg~ 148 (689)
|++|++.++... -..+.....|...+..+.|+|||++|+..+. +..
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~-------------~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSE-------------DILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNR 260 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGG-------------CEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCE
T ss_pred cccccccccccCCCCEEEEEECCCCccc-------------ceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccE
Confidence 999999765310 0122222335566889999999999888765 678
Q ss_pred EEEEEcCC------Ce-EEEEEecCCCCeEEEEEccCCCEEEEEeCC----CeEEEEECCCCcc--eeeccCcccccCCc
Q 040062 149 IHIWNMST------GI-CTAVLRGHSSLVKGVAWDPIGSFIASQSDD----KTVIIWRTSDWSL--AHRTDGHWAKSLGS 215 (689)
Q Consensus 149 I~vwd~~~------~~-~~~~l~~h~~~V~~l~~spdg~~las~s~D----g~I~iwd~~~~~~--~~~~~~~~~~~~~~ 215 (689)
|++||+.+ +. ....+..+...+.. .|+++|+.|+..+.+ +.|.+||+.++.. ...+..+.. .
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~----~ 335 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHE----K 335 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCS----S
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCC----C
Confidence 99999986 43 35556666666655 588999887776653 3699999987642 222222211 1
Q ss_pred ccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCc
Q 040062 216 TFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGT 295 (689)
Q Consensus 216 ~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~ 295 (689)
..+..+.|++++.++++...+. ...+.+++.........+..+.+.+..+.+++++
T Consensus 336 ~~~~~~~~~~~~~lv~~~~~~g--~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~---------------------- 391 (710)
T 2xdw_A 336 DVLEWVACVRSNFLVLCYLHDV--KNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKD---------------------- 391 (710)
T ss_dssp CEEEEEEEETTTEEEEEEEETT--EEEEEEEETTTCCEEEEECCCSSEEEEEECCTTC----------------------
T ss_pred CeEEEEEEEcCCEEEEEEEECC--EEEEEEEECCCCCEEEecCCCCceEEEEecCCCC----------------------
Confidence 2377788987766666654322 2345556653333334455566777888888764
Q ss_pred ccccCccCCCCcEEEEEeC---CCcEEEEeCCCCC
Q 040062 296 SKIGGKESQPYNVIAIGSQ---DRTITVWTTASPR 327 (689)
Q Consensus 296 ~~~~~~~s~~~~~lasgs~---Dg~I~iwd~~~~~ 327 (689)
..++++.+. .+.|++||+.+++
T Consensus 392 ----------~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 392 ----------TEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp ----------SEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ----------CEEEEEEeCCCCCCEEEEEECCCCc
Confidence 123333333 4789999998877
No 196
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.52 E-value=7.1e-13 Score=136.04 Aligned_cols=241 Identities=12% Similarity=0.006 Sum_probs=166.3
Q ss_pred EEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 119 MTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 119 ~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
..+..+.....+++|+++++ +++++..++.|..||..++ ...+..+...+.+++|+++|+++++...++.|.+||..
T Consensus 21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~ 98 (296)
T 3e5z_A 21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP 98 (296)
T ss_dssp EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence 34445667789999999998 7788888999999999887 66677778889999999999988887777899999998
Q ss_pred CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC-------------CCccccceeecCCceeeeeecCCCCCE
Q 040062 198 DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ-------------KPRHSAPVLERGEWAATFDFLGHNAPI 264 (689)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~-------------~~~~~~~i~~~~~~~~~~~l~~h~~~v 264 (689)
+++.......... .....+..++++|+|+++++..... .....+..++.. .....+..+....
T Consensus 99 ~g~~~~~~~~~~~--~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 99 GGEWESIADSFEG--KKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDRVKP 174 (296)
T ss_dssp TCCEEEEECEETT--EECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCCSSE
T ss_pred CCcEEEEeeccCC--CCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCCCCC
Confidence 7775443321111 1112356799999999888632100 001123333332 1122233455566
Q ss_pred EEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC-CCCc---eEEecccCCCCe
Q 040062 265 IVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA-SPRP---LFVAKHFFTQSV 340 (689)
Q Consensus 265 ~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~-~~~~---~~~~~~~h~~~V 340 (689)
..++|+|++ +++++.+.++.|++|++. .+.. ...+ ..+...+
T Consensus 175 ~gi~~s~dg---------------------------------~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p 220 (296)
T 3e5z_A 175 NGLAFLPSG---------------------------------NLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKT 220 (296)
T ss_dssp EEEEECTTS---------------------------------CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCC
T ss_pred ccEEECCCC---------------------------------CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCC
Confidence 778887775 667777778999999997 4443 2333 3345667
Q ss_pred EEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeec-CchhhhhHhhccccce
Q 040062 341 VDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAE-TPAQLLLEAASAKETT 416 (689)
Q Consensus 341 ~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~-Spdg~~Las~s~DG~v 416 (689)
..++++++|+++++. ++.|.+|+.+ +++.. .+..+.. +.+++| ++|+..|..++.+|..
T Consensus 221 ~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~-------------~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~ 280 (296)
T 3e5z_A 221 DGLRVDAGGLIWASA--GDGVHVLTPD-GDELG-------------RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFW 280 (296)
T ss_dssp CSEEEBTTSCEEEEE--TTEEEEECTT-SCEEE-------------EEECSSC-CCEEEEESTTSCEEEEEETTEEE
T ss_pred CeEEECCCCCEEEEc--CCeEEEECCC-CCEEE-------------EEECCCC-ceeEEEECCCCCEEEEEcCCeEE
Confidence 889999999866655 8899999976 44332 2223344 889999 6899888888877765
No 197
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.49 E-value=1.3e-11 Score=128.79 Aligned_cols=252 Identities=7% Similarity=0.003 Sum_probs=174.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
....+.+. +++++++...++.|.+||..+ .+.+.++. .......++++++++++++...++.|.+||
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t-----------~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD 111 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINT-----------FKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIIN 111 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTT-----------CCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEE
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcc-----------cEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEE
Confidence 45777774 345555566679999999987 67777774 346789999999986555554889999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCC-----CCEEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCeEEEEEecCC
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-----ADVVDLNWSPDDSILASGS--LDNTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~V~~l~~spdg~~Lasgs--~Dg~I~vwd~~~~~~~~~l~~h~ 167 (689)
+.++ +....+.... .....|++ ++..|+++. .++.|.+||+.+++.+..+...
T Consensus 112 ~~t~-----------------~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g- 171 (328)
T 3dsm_A 112 PKTY-----------------EITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIG- 171 (328)
T ss_dssp TTTT-----------------EEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECS-
T ss_pred CCCC-----------------eEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcC-
Confidence 9887 4444444322 14556777 455555554 4899999999999988888743
Q ss_pred CCeEEEEEccCCCEEEEEeCC----------CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 168 SLVKGVAWDPIGSFIASQSDD----------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~D----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
.....++++|+|++++++..+ +.|.+||..+++....+..... .....++|+|+++.++++..
T Consensus 172 ~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g-----~~p~~la~~~d~~~lyv~~~-- 244 (328)
T 3dsm_A 172 IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLG-----DWPSEVQLNGTRDTLYWINN-- 244 (328)
T ss_dssp SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTT-----CCCEEEEECTTSCEEEEESS--
T ss_pred CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCC-----CCceeEEEecCCCEEEEEcc--
Confidence 345789999999977776654 7899999998887766543211 13688999999999988754
Q ss_pred CCccccceeecCCceee-eee-cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE---
Q 040062 238 KPRHSAPVLERGEWAAT-FDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG--- 312 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~-~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg--- 312 (689)
.+.+++....... ..+ ..+......++++|+. +.++++.
T Consensus 245 ----~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~--------------------------------g~lyva~~~~ 288 (328)
T 3dsm_A 245 ----DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNN--------------------------------GEVYVADAID 288 (328)
T ss_dssp ----SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTT--------------------------------CCEEEEECTT
T ss_pred ----EEEEEECCCCceeeeeeecCCCCceEEEEEcCCC--------------------------------CeEEEEcccc
Confidence 4556665443321 111 1123567788888753 3566666
Q ss_pred -eCCCcEEEEeCCCCCceEEecccCCCCeEEEEE
Q 040062 313 -SQDRTITVWTTASPRPLFVAKHFFTQSVVDLSW 345 (689)
Q Consensus 313 -s~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 345 (689)
..++.|.+||.. ++.+..+.. ......++|
T Consensus 289 y~~~~~V~v~d~~-g~~~~~i~~--G~~P~~~~~ 319 (328)
T 3dsm_A 289 YQQQGIVYRYSPQ-GKLIDEFYV--GIIPGAFCW 319 (328)
T ss_dssp SSSEEEEEEECTT-CCEEEEEEE--EESEEEEEE
T ss_pred cccCCEEEEECCC-CCEEEEEEe--ccCcceEEE
Confidence 578999999998 887777654 334455555
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.45 E-value=2.8e-12 Score=148.20 Aligned_cols=267 Identities=11% Similarity=-0.051 Sum_probs=163.9
Q ss_pred cCCCCEEEEEeCCC---eEEEEEcCCCCCccccCCCCCCCcccceEEEEE----ecCCCCEEEEEEcCCCCEEEEE----
Q 040062 75 AKHGRYIASGSDDQ---VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL----RGHTADVVDLNWSPDDSILASG---- 143 (689)
Q Consensus 75 spdg~~Lasgs~Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~l~~spdg~~Lasg---- 143 (689)
+|+|++++....++ .-.||....... .++.+... .+|...+..++|||||++||.+
T Consensus 76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~ 142 (695)
T 2bkl_A 76 SRRNGRFFYVRTHKDKEKAILYWRQGESG-------------QEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN 142 (695)
T ss_dssp EEETTEEEEEEECTTCSSCEEEEEESTTS-------------CCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCCC-------------CcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC
Confidence 47899888776654 345555432110 11222211 1355578999999999988843
Q ss_pred -eCCCeEEEEEcCCCeEEEEEecCCCCe--EEEEEccCCCEEEEEeCCCe-------------EEEEECCCCcce--eec
Q 040062 144 -SLDNTIHIWNMSTGICTAVLRGHSSLV--KGVAWDPIGSFIASQSDDKT-------------VIIWRTSDWSLA--HRT 205 (689)
Q Consensus 144 -s~Dg~I~vwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~las~s~Dg~-------------I~iwd~~~~~~~--~~~ 205 (689)
+.+..|++||+.+++.+. ..+...+ ..++|+|||+.|+.++.|.. |++|++.++... ..+
T Consensus 143 G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~ 220 (695)
T 2bkl_A 143 AADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVH 220 (695)
T ss_dssp TCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEE
T ss_pred CCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEE
Confidence 345689999999988641 1121222 67899999999999988776 999999887632 122
Q ss_pred cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccc
Q 040062 206 DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~ 285 (689)
... .....+..+.|||||++|+...........+.+++..... ...+..+...+....+ +++
T Consensus 221 ~~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g------------ 282 (695)
T 2bkl_A 221 ERT----GDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKD------------ 282 (695)
T ss_dssp CCC----CCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETT------------
T ss_pred ecC----CCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCC------------
Confidence 211 1123478899999999998876543222344444332211 1222333333444434 332
Q ss_pred cccccccCCcccccCccCCCCcEEEEEe---CCCcEEEEeCCCCCc--eEEecccC-CCCeEEEEEccCCCeEEEEeCCC
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGS---QDRTITVWTTASPRP--LFVAKHFF-TQSVVDLSWSPDGYSLFACSLDG 359 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs---~Dg~I~iwd~~~~~~--~~~~~~~h-~~~V~~l~~spdg~~L~sgs~DG 359 (689)
.+++... .++.|.+||+.++.. ...+...+ ...+..++|+ ++.++++...|+
T Consensus 283 ---------------------~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg 340 (695)
T 2bkl_A 283 ---------------------RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDA 340 (695)
T ss_dssp ---------------------EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETT
T ss_pred ---------------------cEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECC
Confidence 4444443 257899999988763 22333222 4568889998 778888899999
Q ss_pred cEEEEEee-ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhH
Q 040062 360 TVANFHFE-VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 360 ~I~vwd~~-~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
..+||.++ .++....+. ....+.+..++++||+..|+
T Consensus 341 ~~~l~~~~~~g~~~~~l~------------~~~~~~v~~~~~s~d~~~l~ 378 (695)
T 2bkl_A 341 TSEVRVATLKGKPVRTVQ------------LPGVGAASNLMGLEDLDDAY 378 (695)
T ss_dssp EEEEEEEETTCCEEEECC------------CSSSSEECCCBSCTTCSEEE
T ss_pred EEEEEEEeCCCCeeEEec------------CCCCeEEEEeecCCCCCEEE
Confidence 99999876 233222111 11244688899999987776
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.44 E-value=2.3e-10 Score=116.58 Aligned_cols=273 Identities=10% Similarity=-0.054 Sum_probs=179.0
Q ss_pred CCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE
Q 040062 64 DHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG 143 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg 143 (689)
.....+.++++.++|+++++...++.|.+|+.. +. .....+..+...+..+++.+++.++++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~----------------~~~~~~~~~~~~~~~i~~~~~g~l~v~~ 79 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GR----------------IKEFEVPTPDAKVMCLIVSSLGDIWFTE 79 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----------------EEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cc----------------eEEEECCCCCCcceeEEECCCCCEEEEe
Confidence 345678999999999988887778999999977 42 1111222344678999999999877777
Q ss_pred eCCCeEEEEEcCCCeEEEE-EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 144 SLDNTIHIWNMSTGICTAV-LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 144 s~Dg~I~vwd~~~~~~~~~-l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
..++.|..||.. ++.... +......+.+++++++++++++...++.|..||.. ++.... ... .....+..++
T Consensus 80 ~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-~~~----~~~~~~~~i~ 152 (300)
T 2qc5_A 80 NGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY-DLP----NKGSYPAFIT 152 (300)
T ss_dssp TTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE-ECS----STTCCEEEEE
T ss_pred cCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc-cCC----CCCCCceeEE
Confidence 668899999987 554322 22244678999999999988887778899999987 544322 111 0123478899
Q ss_pred EcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCcc
Q 040062 223 WSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKE 302 (689)
Q Consensus 223 ~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (689)
++++|+..++.... ..+..++.......+.+..+...+..+++.+++
T Consensus 153 ~d~~g~l~v~~~~~----~~i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g----------------------------- 199 (300)
T 2qc5_A 153 LGSDNALWFTENQN----NSIGRITNTGKLEEYPLPTNAAAPVGITSGNDG----------------------------- 199 (300)
T ss_dssp ECTTSSEEEEETTT----TEEEEECTTCCEEEEECSSTTCCEEEEEECTTS-----------------------------
T ss_pred ECCCCCEEEEecCC----CeEEEECCCCcEEEeeCCCCCCCcceEEECCCC-----------------------------
Confidence 99999965554321 223334332211222233334456677776654
Q ss_pred CCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHH
Q 040062 303 SQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDE 382 (689)
Q Consensus 303 s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~ 382 (689)
+++++....+.|.+||. +++........+...+.+++++++|+++++...++.|..|+. .+++..
T Consensus 200 ----~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~--------- 264 (300)
T 2qc5_A 200 ----ALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQE--------- 264 (300)
T ss_dssp ----SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEEE---------
T ss_pred ----CEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEEE---------
Confidence 66666666778999998 444433322223567899999999986666666789999987 343321
Q ss_pred HHHhccCCccCceeeeecCchhhhhHhhc
Q 040062 383 LKRSRYGDVRGRLANLAETPAQLLLEAAS 411 (689)
Q Consensus 383 ~~~~~~g~~~~~I~~l~~Spdg~~Las~s 411 (689)
.........+.+++++++|.+.++..
T Consensus 265 ---~~~~~~~~~~~~i~~~~~g~l~v~~~ 290 (300)
T 2qc5_A 265 ---YQLQTENAEPHGITFGKDGSVWFALK 290 (300)
T ss_dssp ---EECCSTTCCCCCEEECTTSCEEEECS
T ss_pred ---EECCccCCccceeEeCCCCCEEEEcc
Confidence 11111223588999999998766654
No 200
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.42 E-value=3.3e-11 Score=129.13 Aligned_cols=279 Identities=11% Similarity=0.020 Sum_probs=180.5
Q ss_pred CCCCEEEEEeCC-----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe----------CC
Q 040062 23 PGALRFATGGGD-----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS----------DD 87 (689)
Q Consensus 23 pdg~~Latgs~D-----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~D 87 (689)
++++++++.... +.|.++|..+ .+.+.++..-..+ .++++|||++|+.+. .+
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t-----------~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGST-----------GRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTT-----------TEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCC-----------CEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCC
Confidence 577777766552 6999999987 7888888755555 899999999888775 36
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCe
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-------TADVVDLNWSPDDSILASGSL--DNTIHIWNMSTGI 158 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~~~~~ 158 (689)
+.|.++|..+. +.+..+.-. ......+.|+||+++|+++.. ++.|.+.|+.+++
T Consensus 149 ~~VsviD~~t~-----------------~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~k 211 (426)
T 3c75_H 149 DYVEVFDPVTF-----------------LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKT 211 (426)
T ss_dssp EEEEEECTTTC-----------------CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTE
T ss_pred CEEEEEECCCC-----------------cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCe
Confidence 78999999887 344444311 233567899999999998874 5799999999999
Q ss_pred EEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQ 237 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~ 237 (689)
.+..+..... ....|++ ..+++.+.||.+.+.++.+++...... .............+.|++++..++.....
T Consensus 212 vv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~-~~~~v~~~p~~~~~~~~~dg~~~~~~s~~- 285 (426)
T 3c75_H 212 FDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNT-EVFHTEDELLINHPAFSLRSGRLVWPTYT- 285 (426)
T ss_dssp EEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEEC-CCCSCTTSCBCSCCEECTTTCEEEEEBTT-
T ss_pred EEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEee-eeeccCCCceeeEeeecCCCCEEEEEeCC-
Confidence 9988874221 2334543 566677788888888886555442211 00000001112245678888776665431
Q ss_pred CCccccceeecCCceee----eeecC--------CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCC
Q 040062 238 KPRHSAPVLERGEWAAT----FDFLG--------HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQP 305 (689)
Q Consensus 238 ~~~~~~~i~~~~~~~~~----~~l~~--------h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 305 (689)
..+.+.+....... +.+.. .......+++++++
T Consensus 286 ---g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg-------------------------------- 330 (426)
T 3c75_H 286 ---GKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQS-------------------------------- 330 (426)
T ss_dssp ---SEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGG--------------------------------
T ss_pred ---CcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCC--------------------------------
Confidence 22334433211100 00000 00001113444443
Q ss_pred CcEEEEEe----------CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC-eEEEEe-CCCcEEEEEeecccccc
Q 040062 306 YNVIAIGS----------QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY-SLFACS-LDGTVANFHFEVKELGH 373 (689)
Q Consensus 306 ~~~lasgs----------~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~-~L~sgs-~DG~I~vwd~~~~~l~~ 373 (689)
+.+++.. .++.|.++|+.+.+.+..+.. ......+.|+|||+ +|+++. .++.|.|+|..+.+...
T Consensus 331 -~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~ 407 (426)
T 3c75_H 331 -DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELR 407 (426)
T ss_dssp -TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred -CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEE
Confidence 4444432 135799999999999988865 33588999999999 888888 49999999999988765
Q ss_pred cc
Q 040062 374 RL 375 (689)
Q Consensus 374 ~l 375 (689)
.+
T Consensus 408 tI 409 (426)
T 3c75_H 408 SV 409 (426)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 201
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.41 E-value=9.1e-12 Score=126.65 Aligned_cols=224 Identities=13% Similarity=0.048 Sum_probs=163.0
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCC-CCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHT-ADVVDLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
.+++|++++.|+.|.+||.+++ +.+..+..+. ..+.++.++|+|++|+ +.++.|..||.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG-----------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~- 63 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK-----------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR- 63 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT-----------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-
T ss_pred CCcEEEeeCCCCEEEEEECCCC-----------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-
Confidence 4678999999999999999888 6777777665 4789999999999888 45788999999
Q ss_pred CCeEEEEEecCC-CCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 156 TGICTAVLRGHS-SLVKGVAWDPIGSFIASQSD-DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 156 ~~~~~~~l~~h~-~~V~~l~~spdg~~las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|. +++.+..+.....
T Consensus 64 ~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~----------------------- 119 (276)
T 3no2_A 64 DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETG----------------------- 119 (276)
T ss_dssp TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCS-----------------------
T ss_pred CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCC-----------------------
Confidence 899999998653 57889999999999999887 666666664 4444433321000
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
...+......+.+.+ +++++++..
T Consensus 120 -----------------------~~~~~~~~~~v~~~~---------------------------------~G~~lv~~~ 143 (276)
T 3no2_A 120 -----------------------IERPHAQFRQINKNK---------------------------------KGNYLVPLF 143 (276)
T ss_dssp -----------------------CSSGGGSCSCCEECT---------------------------------TSCEEEEET
T ss_pred -----------------------CCcccccccCceECC---------------------------------CCCEEEEec
Confidence 000000111223333 348899999
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccC
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRG 393 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~ 393 (689)
.++.|..||.+ ++.+..+.. ...+.++.+.++|++|++++.++.|..||.+++++...+...+ .-+....
T Consensus 144 ~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~-------~~~~~l~ 213 (276)
T 3no2_A 144 ATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNAND-------IEGVQLF 213 (276)
T ss_dssp TTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGG-------SBSCCCS
T ss_pred CCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCC-------CCCcccc
Confidence 99999999988 888888765 3456778889999999999888899999999888876554211 0111122
Q ss_pred ceeeeecCchhhhhHhh
Q 040062 394 RLANLAETPAQLLLEAA 410 (689)
Q Consensus 394 ~I~~l~~Spdg~~Las~ 410 (689)
.+..++..++|.++++.
T Consensus 214 ~~~~~~~~~~G~i~v~~ 230 (276)
T 3no2_A 214 FVAQLFPLQNGGLYICN 230 (276)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred ccccceEcCCCCEEEEe
Confidence 47788888999888775
No 202
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=5.5e-12 Score=133.38 Aligned_cols=191 Identities=10% Similarity=0.047 Sum_probs=138.8
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
.+++.+++++...+|++|+.+ .+++|+++.............+..... .+.+ |+.|+| ++++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEE
Confidence 369999999999999999997 567799875321000000001111222 3666 999999 99999999 88999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
|+.+.. .......|...+.++.+.+.. ++++..||.|.+||+.++.... +...|+|+
T Consensus 112 dv~sl~-----------------~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v 168 (388)
T 1xip_A 112 DLEELS-----------------EFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ----LAQNVTSF 168 (388)
T ss_dssp ESSSTT-----------------CEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE----EEESEEEE
T ss_pred Echhhh-----------------ccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc----ccCCceEE
Confidence 998752 223445567778888887543 8889999999999999887653 44689999
Q ss_pred EEccCCCEEEEEeCCCeEEEEECCCCcc--eeeccCccccc---CCcccEEEEEEcCCCCeEEEecC
Q 040062 174 AWDPIGSFIASQSDDKTVIIWRTSDWSL--AHRTDGHWAKS---LGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 174 ~~spdg~~las~s~Dg~I~iwd~~~~~~--~~~~~~~~~~~---~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+|+|+| ++.+..||++++|+...... ..++..+..-. .....+.++.|.+++.++++-..
T Consensus 169 ~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 169 DVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp EECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred EEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 999999 67899999999999887775 44453221111 12456999999999999987543
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.38 E-value=2.6e-11 Score=122.07 Aligned_cols=232 Identities=10% Similarity=0.018 Sum_probs=150.2
Q ss_pred CEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 127 DVVDLNWSPDDSILA-SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 127 ~V~~l~~spdg~~La-sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
...++++++++++++ +...++.|.+||..+.........+...+.+|+++++++++++.. ++.|.+||........ +
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~-~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTV-L 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEE-C
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEee-e
Confidence 688999999998776 446788999999866543322223445678999999999666655 8899999987654332 2
Q ss_pred cCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccc
Q 040062 206 DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~ 285 (689)
.. .....+..++++++|+.+++... ...+..++.+.................+++++++
T Consensus 103 ~~-----~~~~~p~~i~~~~~g~l~v~~~~----~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g------------ 161 (270)
T 1rwi_B 103 PF-----DGLNYPEGLAVDTQGAVYVADRG----NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG------------ 161 (270)
T ss_dssp CC-----CSCSSEEEEEECTTCCEEEEEGG----GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC------------
T ss_pred ec-----CCcCCCcceEECCCCCEEEEECC----CCEEEEEECCCceeEeeccccCCCceeEEEeCCC------------
Confidence 11 11234789999999986665433 1233444433332222111222234555555543
Q ss_pred cccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+++++...++.|.+||.......... ..+...+..++++++|.++++...++.|.+|+
T Consensus 162 ---------------------~l~v~~~~~~~i~~~~~~~~~~~~~~-~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~ 219 (270)
T 1rwi_B 162 ---------------------NVYVTDTDNNRVVKLEAESNNQVVLP-FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLL 219 (270)
T ss_dssp ---------------------CEEEEEGGGTEEEEECTTTCCEEECC-CSSCCSEEEEEECTTCCEEEEETTTSCEEEEC
T ss_pred ---------------------CEEEEECCCCEEEEEecCCCceEeec-ccCCCCceEEEECCCCCEEEEECCCCcEEEEc
Confidence 67777667789999998776543322 22236789999999997777777788999999
Q ss_pred eeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 366 FEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 366 ~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
........ ... .+...+..++++++|.++++...++.|
T Consensus 220 ~~~~~~~~------------~~~-~~~~~p~~i~~~~~g~l~v~~~~~~~v 257 (270)
T 1rwi_B 220 AGSTTSTV------------LPF-TGLNTPLAVAVDSDRTVYVADRGNDRV 257 (270)
T ss_dssp TTCSCCEE------------CCC-CSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred CCCCccee------------ecc-CCCCCceeEEECCCCCEEEEECCCCEE
Confidence 86543221 111 122358999999999988888889998
No 204
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.37 E-value=2.8e-10 Score=117.15 Aligned_cols=240 Identities=11% Similarity=0.126 Sum_probs=156.5
Q ss_pred CCCcEEEEEEcCCCCEEEE-------EeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE----ecCCCCEEEEEE
Q 040062 65 HFGSVNCVRWAKHGRYIAS-------GSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL----RGHTADVVDLNW 133 (689)
Q Consensus 65 h~~~V~~v~fspdg~~Las-------gs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~l~~ 133 (689)
......+++|+++|+++++ +..++.|.+||..++. ..... .++...+.++++
T Consensus 16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~-----------------~~~~~~~~~~~~~~~~~~i~~ 78 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK-----------------KTVICKPEVNGYGGIPAGCQC 78 (314)
T ss_dssp CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC-----------------EEEEECCEETTEECCEEEEEE
T ss_pred cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc-----------------EEEEEecccCCCCCCCceEEE
Confidence 3445689999999988887 5678899999987662 11111 124567999999
Q ss_pred cCC-CCEEEEEeCCCeEEEEEcCCCeEEEE-Eec----CCCCeEEEEEccCCCEEEEEeCC---------------CeEE
Q 040062 134 SPD-DSILASGSLDNTIHIWNMSTGICTAV-LRG----HSSLVKGVAWDPIGSFIASQSDD---------------KTVI 192 (689)
Q Consensus 134 spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~-l~~----h~~~V~~l~~spdg~~las~s~D---------------g~I~ 192 (689)
+++ +++++ ++..+.|.+||.. ++.... ... +...+.+++++++|+++++...+ +.|.
T Consensus 79 ~~~~g~l~v-~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~ 156 (314)
T 1pjx_A 79 DRDANQLFV-ADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIY 156 (314)
T ss_dssp CSSSSEEEE-EETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEE
T ss_pred ecCCCcEEE-EECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEE
Confidence 999 65444 4445589999998 665433 221 12357899999999988777654 4677
Q ss_pred EEECCCCcceeeccCcccccCCcccEEEEEEc----CCCCeEEEecCCCCCccccceeecC---Cce---eeeeecCCC-
Q 040062 193 IWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWS----PCGHFITTTHGFQKPRHSAPVLERG---EWA---ATFDFLGHN- 261 (689)
Q Consensus 193 iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~s----pdg~~l~~~~~~~~~~~~~~i~~~~---~~~---~~~~l~~h~- 261 (689)
.||.. ++...... . ......++|+ ++++.++.+.... ..+..++.. ... ....+..+.
T Consensus 157 ~~~~~-g~~~~~~~-~------~~~~~~i~~~~~~d~dg~~l~v~~~~~---~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 225 (314)
T 1pjx_A 157 CFTTD-GQMIQVDT-A------FQFPNGIAVRHMNDGRPYQLIVAETPT---KKLWSYDIKGPAKIENKKVWGHIPGTHE 225 (314)
T ss_dssp EECTT-SCEEEEEE-E------ESSEEEEEEEECTTSCEEEEEEEETTT---TEEEEEEEEETTEEEEEEEEEECCCCSS
T ss_pred EECCC-CCEEEecc-C------CCCcceEEEecccCCCCCEEEEEECCC---CeEEEEECCCCCccccceEEEECCCCCC
Confidence 77664 44332211 1 1225778999 9998776654322 233444422 111 112222332
Q ss_pred CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeE
Q 040062 262 APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVV 341 (689)
Q Consensus 262 ~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~ 341 (689)
.....+++++++ +++++...++.|.+||..+++.+..+.. +...+.
T Consensus 226 ~~p~~i~~d~~G---------------------------------~l~v~~~~~~~i~~~d~~~g~~~~~~~~-~~~~~~ 271 (314)
T 1pjx_A 226 GGADGMDFDEDN---------------------------------NLLVANWGSSHIEVFGPDGGQPKMRIRC-PFEKPS 271 (314)
T ss_dssp CEEEEEEEBTTC---------------------------------CEEEEEETTTEEEEECTTCBSCSEEEEC-SSSCEE
T ss_pred CCCCceEECCCC---------------------------------CEEEEEcCCCEEEEEcCCCCcEeEEEeC-CCCCce
Confidence 445666666654 7777777889999999987776665543 456799
Q ss_pred EEEEccCCCeEEEE-eCCCcEEEEEeec
Q 040062 342 DLSWSPDGYSLFAC-SLDGTVANFHFEV 368 (689)
Q Consensus 342 ~l~~spdg~~L~sg-s~DG~I~vwd~~~ 368 (689)
+++|+++|+.|+++ ..++.|..|++..
T Consensus 272 ~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 272 NLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred eEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99999999966555 4568899998764
No 205
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.33 E-value=4.5e-11 Score=125.60 Aligned_cols=266 Identities=12% Similarity=0.096 Sum_probs=166.9
Q ss_pred ceEEEEEEcCCCCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceee------eeecCCCCcEEEEEEcCCCCEEEEEe
Q 040062 14 MQIFSIDVQPGALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLL------ATLRDHFGSVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~------~~l~~h~~~V~~v~fspdg~~Lasgs 85 (689)
.....++++++|+++++... ++.++||.+.. ++.. .....|...+.+++|+++|+++++-.
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~-----------g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ-----------DGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET-----------TEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC-----------CCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 36899999999999888642 34366666642 1111 11234667899999999998666544
Q ss_pred C-----CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCCCCEE-EEEe---CCCeEE
Q 040062 86 D-----DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPDDSIL-ASGS---LDNTIH 150 (689)
Q Consensus 86 ~-----Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spdg~~L-asgs---~Dg~I~ 150 (689)
. +..|.+||+.++ +....+.. +...+.++++++++..+ ++-. .++.|.
T Consensus 86 g~~~~~~~~i~~~d~~tg-----------------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~ 148 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNN-----------------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALI 148 (343)
T ss_dssp HHHHTSCCEEEEEETTTT-----------------EEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEE
T ss_pred CCCcCCCCeEEEEECCCC-----------------eEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEE
Confidence 3 578999999877 33444432 23456899999865544 4444 578999
Q ss_pred EEEcCCCeEEEEEecCCCCeE-EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCe
Q 040062 151 IWNMSTGICTAVLRGHSSLVK-GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHF 229 (689)
Q Consensus 151 vwd~~~~~~~~~l~~h~~~V~-~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~ 229 (689)
+||+.+++....+.+|..... ...+.++|..+.+.+.++.++.|.. ....++|+|+|+.
T Consensus 149 v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~--------------------~~~gia~s~dg~~ 208 (343)
T 2qe8_A 149 RVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL--------------------GVNGIVLDAENEW 208 (343)
T ss_dssp EEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC--------------------CEEEEEECTTSCE
T ss_pred EEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceec--------------------ccceeEeccCCCE
Confidence 999998887777665432211 1345567777777778887766531 1567999999998
Q ss_pred EEEecCCCCCccccceeecCCc----------eeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccccc
Q 040062 230 ITTTHGFQKPRHSAPVLERGEW----------AATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 230 l~~~~~~~~~~~~~~i~~~~~~----------~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
|+.+..... .+..++.... ...+...++.+....+++++
T Consensus 209 ly~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~---------------------------- 257 (343)
T 2qe8_A 209 LYLSPMHST---SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDK---------------------------- 257 (343)
T ss_dssp EEEEESSCS---EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECT----------------------------
T ss_pred EEEEeCCCC---eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECC----------------------------
Confidence 888754332 1111111000 00001111222223344444
Q ss_pred CccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEE
Q 040062 300 GKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVAN 363 (689)
Q Consensus 300 ~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~v 363 (689)
++.++++...++.|.+||..+++........+...+.+++|+++|+++++.+..+.+.+
T Consensus 258 -----~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~ 316 (343)
T 2qe8_A 258 -----DHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAP 316 (343)
T ss_dssp -----TCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGG
T ss_pred -----CCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccccccc
Confidence 34788888888999999985565433333223456899999999887777765544433
No 206
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.32 E-value=1.6e-09 Score=116.52 Aligned_cols=244 Identities=12% Similarity=0.034 Sum_probs=155.3
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
.....|+|+++++++++...++.|++||+.++ ........ ..... ++|+++++.|+++..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g-----------------~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~ 191 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN-----------------KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWE 191 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTT-----------------EEEEEEET-CCBCB-CEECTTSSEEEEEBSS
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCC-----------------EEEEeecc-CCCCc-eeEecCCCcEEEEecC
Confidence 46889999999998888877899999999876 33333333 22333 9999999999988876
Q ss_pred C--eEEEEEcCCCeEEEEE----ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE
Q 040062 147 N--TIHIWNMSTGICTAVL----RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR 220 (689)
Q Consensus 147 g--~I~vwd~~~~~~~~~l----~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~ 220 (689)
+ .|.+|+...+.....+ ..+...+.+++++|++..|+.+..++.|+.||..++.....................
T Consensus 192 ~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 192 GTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp TTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred CCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 6 8999998776554444 224567789999996555666777889999999876533220000000001110128
Q ss_pred EEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC---------------CCEEEEEEcCCccccccccccccc
Q 040062 221 LGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN---------------APIIVVKFNHSMFRRNSASSQEVK 285 (689)
Q Consensus 221 l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~---------------~~v~~v~fsp~~~~~~~~~~~~~~ 285 (689)
++|+|++..|+.+...+ ..+..++.... ...+.++. .....+++++
T Consensus 272 ia~~p~~g~lyv~d~~~---~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~-------------- 332 (409)
T 3hrp_A 272 LIYYFVDSNFYMSDQNL---SSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDE-------------- 332 (409)
T ss_dssp EEEETTTTEEEEEETTT---TEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECT--------------
T ss_pred EEEeCCCCEEEEEeCCC---CEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeC--------------
Confidence 99999766666654322 23333433221 11111111 1233444444
Q ss_pred cccccccCCcccccCccCCCCcEEEEEe-CCCcEEEEeCCCCCceEEeccc-------------CCCCeEEEEEccCCCe
Q 040062 286 AAPVGWTNGTSKIGGKESQPYNVIAIGS-QDRTITVWTTASPRPLFVAKHF-------------FTQSVVDLSWSPDGYS 351 (689)
Q Consensus 286 ~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg~I~iwd~~~~~~~~~~~~~-------------h~~~V~~l~~spdg~~ 351 (689)
+++++++-. .++.|+.|++.++......... .-.....++++++|.+
T Consensus 333 -------------------dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~l 393 (409)
T 3hrp_A 333 -------------------DGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGY 393 (409)
T ss_dssp -------------------TCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEE
T ss_pred -------------------CCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCE
Confidence 447777777 7899999998776543322210 0245889999999888
Q ss_pred EEEEeCCCcEEEEEee
Q 040062 352 LFACSLDGTVANFHFE 367 (689)
Q Consensus 352 L~sgs~DG~I~vwd~~ 367 (689)
+++-..++.|+.++++
T Consensus 394 yVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 394 WIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EEEESTTCEEEEEEEC
T ss_pred EEEECCCCeEEEEEeC
Confidence 8888888889888763
No 207
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.31 E-value=9.1e-10 Score=113.24 Aligned_cols=237 Identities=7% Similarity=0.042 Sum_probs=154.4
Q ss_pred ceEEEEEEcCCCCEEEE-------EeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-----CCCCcEEEEEEcCC-CCE
Q 040062 14 MQIFSIDVQPGALRFAT-------GGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-----DHFGSVNCVRWAKH-GRY 80 (689)
Q Consensus 14 ~~I~si~~spdg~~Lat-------gs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~v~fspd-g~~ 80 (689)
....+++|+++|.++++ +..++.|.+||..+ ++.. .+. ++...+.+++++++ |++
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~-----------g~~~-~~~~~~~~~~~~~~~~i~~~~~~g~l 85 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKT-----------GKKT-VICKPEVNGYGGIPAGCQCDRDANQL 85 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTT-----------CCEE-EEECCEETTEECCEEEEEECSSSSEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCC-----------CcEE-EEEecccCCCCCCCceEEEecCCCcE
Confidence 35789999999988887 56778999999765 2221 222 25567999999999 765
Q ss_pred EEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEE-Ee----cCCCCEEEEEEcCCCCEEEEEeCC---------
Q 040062 81 IASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT-LR----GHTADVVDLNWSPDDSILASGSLD--------- 146 (689)
Q Consensus 81 Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~-l~----~h~~~V~~l~~spdg~~Lasgs~D--------- 146 (689)
+++.. +..|.+||.+ +. .... .. .+...+.+++++++++++++...+
T Consensus 86 ~v~~~-~~~l~~~d~~-g~-----------------~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~ 146 (314)
T 1pjx_A 86 FVADM-RLGLLVVQTD-GT-----------------FEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTR 146 (314)
T ss_dssp EEEET-TTEEEEEETT-SC-----------------EEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCB
T ss_pred EEEEC-CCCEEEEeCC-CC-----------------EEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccc
Confidence 55544 4478889987 52 1111 11 122458899999999887776655
Q ss_pred ------CeEEEEEcCCCeEEEEEecCCCCeEEEEEc----cCCCEEEEE-eCCCeEEEEECC-CCcce-----eeccCcc
Q 040062 147 ------NTIHIWNMSTGICTAVLRGHSSLVKGVAWD----PIGSFIASQ-SDDKTVIIWRTS-DWSLA-----HRTDGHW 209 (689)
Q Consensus 147 ------g~I~vwd~~~~~~~~~l~~h~~~V~~l~~s----pdg~~las~-s~Dg~I~iwd~~-~~~~~-----~~~~~~~ 209 (689)
+.|..||.. ++...... +.....+++|+ ++++.|+.+ ..++.|.+||+. ++... ..+....
T Consensus 147 ~~~~~~~~l~~~~~~-g~~~~~~~-~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~ 224 (314)
T 1pjx_A 147 SMQEKFGSIYCFTTD-GQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH 224 (314)
T ss_dssp TTSSSCEEEEEECTT-SCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS
T ss_pred cccCCCCeEEEECCC-CCEEEecc-CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC
Confidence 578888875 55443332 44557889999 999766555 467899999976 33321 1111110
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
......++++++|+.+++.... ..+..++..+......+..+...+..++|++++
T Consensus 225 -----~~~p~~i~~d~~G~l~v~~~~~----~~i~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg---------------- 279 (314)
T 1pjx_A 225 -----EGGADGMDFDEDNNLLVANWGS----SHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQT---------------- 279 (314)
T ss_dssp -----SCEEEEEEEBTTCCEEEEEETT----TEEEEECTTCBSCSEEEECSSSCEEEEEECTTS----------------
T ss_pred -----CCCCCceEECCCCCEEEEEcCC----CEEEEEcCCCCcEeEEEeCCCCCceeEEECCCC----------------
Confidence 0336789999999887775432 345556554333333344455778888887775
Q ss_pred cccCCcccccCccCCCCc-EEEEEeCCCcEEEEeCCC
Q 040062 290 GWTNGTSKIGGKESQPYN-VIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~-~lasgs~Dg~I~iwd~~~ 325 (689)
+ ++++...++.|..|++..
T Consensus 280 -----------------~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 280 -----------------KTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp -----------------SEEEEEETTTTEEEEEECSS
T ss_pred -----------------CEEEEEeCCCCeEEEEeCCC
Confidence 5 445555668899999865
No 208
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.30 E-value=1.2e-09 Score=115.96 Aligned_cols=263 Identities=10% Similarity=-0.078 Sum_probs=158.6
Q ss_pred EEcCCCCEEEEEeC--CC---eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe---
Q 040062 73 RWAKHGRYIASGSD--DQ---VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS--- 144 (689)
Q Consensus 73 ~fspdg~~Lasgs~--Dg---~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs--- 144 (689)
...|+++++..+.. .. .|.+||..++ +.+..+...... .++|+||+++|+++.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~-----------------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~ 87 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSG-----------------SILGHVNGGFLP--NPVAAHSGSEFALASTSF 87 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCC-----------------eEEEEecCCCCC--CeEECCCCCEEEEEeccc
Confidence 34577887776653 22 8899999887 555556544443 999999999988886
Q ss_pred -------CCCeEEEEEcCCCeEEEEEecC-------CCCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCcceee-ccC
Q 040062 145 -------LDNTIHIWNMSTGICTAVLRGH-------SSLVKGVAWDPIGSFIASQSD--DKTVIIWRTSDWSLAHR-TDG 207 (689)
Q Consensus 145 -------~Dg~I~vwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~las~s~--Dg~I~iwd~~~~~~~~~-~~~ 207 (689)
.++.|.+||..+.+.+..+... ......+.|+|||++|+++.. ++.|.++| .+++.+.. +..
T Consensus 88 ~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~ 166 (373)
T 2mad_H 88 SRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS 166 (373)
T ss_pred cccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC
Confidence 3678999999998888776532 133468999999999998874 47899999 99888776 543
Q ss_pred cccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee-----cCCCCCE-EEEEEcCCccccccccc
Q 040062 208 HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF-----LGHNAPI-IVVKFNHSMFRRNSASS 281 (689)
Q Consensus 208 ~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-----~~h~~~v-~~v~fsp~~~~~~~~~~ 281 (689)
.. ++.+.|++...+.....+ ..+..++. ........ .....++ ....|.+++
T Consensus 167 ~~----------~~~~~~~~~~~~~~~~~d---g~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~-------- 224 (373)
T 2mad_H 167 PT----------CYHIHPGAPSTFYLLCAQ---GGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKS-------- 224 (373)
T ss_pred Cc----------eEEEEeCCCceEEEEcCC---CCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecC--------
Confidence 21 123334433222221111 11111211 11110000 0000110 111222221
Q ss_pred cccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCce--EEecc---------cCCCCeEEEEEccCCC
Q 040062 282 QEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPL--FVAKH---------FFTQSVVDLSWSPDGY 350 (689)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~--~~~~~---------~h~~~V~~l~~spdg~ 350 (689)
+.+++. +.++.+.+.|+...... ..+.. ........+.++||++
T Consensus 225 ------------------------~~~~~~-~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~ 279 (373)
T 2mad_H 225 ------------------------GRIVWP-VYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSD 279 (373)
T ss_pred ------------------------CEEEEE-cCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCC
Confidence 233333 36788999998765322 11110 0112244578999999
Q ss_pred eEEEEeC----------CCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhh-hhHhhc-cccce
Q 040062 351 SLFACSL----------DGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL-LLEAAS-AKETT 416 (689)
Q Consensus 351 ~L~sgs~----------DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~-~Las~s-~DG~v 416 (689)
.|+++.. ++.|.++|..+++....+.. .+...+++|+|||+ +|.++. .+++|
T Consensus 280 ~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--------------g~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 280 GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--------------GHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--------------CCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 8888654 35799999998887655421 12479999999998 677766 47888
No 209
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.30 E-value=1.6e-10 Score=134.39 Aligned_cols=271 Identities=11% Similarity=-0.017 Sum_probs=161.6
Q ss_pred cCCCCEEEEEeCCCe---EEEEEcCCCCCccccCCCCCCCcccceEEEE----EecCCCCEEEEEEcCCCCEEEEEeCC-
Q 040062 75 AKHGRYIASGSDDQV---ILIHEKKPGSGTTEFGSGEPPDIENWKVAMT----LRGHTADVVDLNWSPDDSILASGSLD- 146 (689)
Q Consensus 75 spdg~~Lasgs~Dg~---I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~----l~~h~~~V~~l~~spdg~~Lasgs~D- 146 (689)
+|+|++++....++. -.||....... . ...++.+.. -.+|...+..++|||||++|+.+..+
T Consensus 115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~----~------~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~ 184 (741)
T 1yr2_A 115 QRRGASVFYSWNSGLMNQSQLLVRPADAP----V------GTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG 184 (741)
T ss_dssp EEETTEEEEEEECSSCSSCEEEEEETTSC----T------TCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET
T ss_pred EEECCEEEEEEEcCCCeEEEEEEEcCCcc----C------CCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC
Confidence 489998887765543 55665543100 0 001122111 11233468899999999999887654
Q ss_pred ----CeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCe--------------EEEEECCCCccee--ecc
Q 040062 147 ----NTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKT--------------VIIWRTSDWSLAH--RTD 206 (689)
Q Consensus 147 ----g~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~--------------I~iwd~~~~~~~~--~~~ 206 (689)
..|++||+.+++.+.... +...+..++|+|| +.|+.++.|+. |++|++.++.... .+.
T Consensus 185 G~e~~~i~v~dl~tg~~~~~~~-~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~ 262 (741)
T 1yr2_A 185 GSDWRTVKFVGVADGKPLADEL-KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFA 262 (741)
T ss_dssp TCSEEEEEEEETTTCCEEEEEE-EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEEC
T ss_pred CCceEEEEEEECCCCCCCCccC-CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEec
Confidence 369999999998765422 2222357899999 98888876654 8899997765321 111
Q ss_pred CcccccCCcccEEEEEEcCCCCeEEEecCCCC-CccccceeecCCce-e-eeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 207 GHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK-PRHSAPVLERGEWA-A-TFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 207 ~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~-~~~~~~i~~~~~~~-~-~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.. ....++..+.|||||++|+....... ....+.+++..... . ...+..+...+....+ +++
T Consensus 263 ~~----~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~-~dg---------- 327 (741)
T 1yr2_A 263 TP----ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVD-GVG---------- 327 (741)
T ss_dssp CT----TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEE-EET----------
T ss_pred cC----CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEe-ccC----------
Confidence 11 11124788999999999888764331 23455566554331 1 2223333333333322 433
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeC----CCcEEEEeCCCCC-ceEEecccCCCCeEEEEEccCCCeEEEEeCC
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----DRTITVWTTASPR-PLFVAKHFFTQSVVDLSWSPDGYSLFACSLD 358 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----Dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~spdg~~L~sgs~D 358 (689)
+.|+..+. ++.|.+||+.++. ....+...+...+.+++|+ ++.++++...|
T Consensus 328 -----------------------~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~d 383 (741)
T 1yr2_A 328 -----------------------DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHD 383 (741)
T ss_dssp -----------------------TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEET
T ss_pred -----------------------CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEEC
Confidence 56666554 3459999998752 3333333445557788887 66778888899
Q ss_pred CcEEEEEee-ccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhH
Q 040062 359 GTVANFHFE-VKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 359 G~I~vwd~~-~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
+..+||.++ .++....+. ....+.+..+.++||+..|+
T Consensus 384 g~~~l~~~~~~g~~~~~l~------------~~~~~~v~~~~~s~d~~~l~ 422 (741)
T 1yr2_A 384 AKSQVLAFDLDGKPAGAVS------------LPGIGSASGLSGRPGDRHAY 422 (741)
T ss_dssp TEEEEEEEETTSCEEEECB------------CSSSCEEEEEECCBTCSCEE
T ss_pred CEEEEEEEeCCCCceeecc------------CCCCeEEEEeecCCCCCEEE
Confidence 998888776 233222111 11234688899999987776
No 210
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.29 E-value=8.7e-11 Score=135.58 Aligned_cols=245 Identities=11% Similarity=0.068 Sum_probs=155.2
Q ss_pred CCCCcEEEEEEcCCCCEEEEEe-----CCCeEEEEEcCCCCCccccCCCCCCCcccceEEE-EEecCCCCEEEEEEcCCC
Q 040062 64 DHFGSVNCVRWAKHGRYIASGS-----DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRGHTADVVDLNWSPDD 137 (689)
Q Consensus 64 ~h~~~V~~v~fspdg~~Lasgs-----~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l~~spdg 137 (689)
+|...+..++|||||++||.+. ++..|++||+.++. .+. .+... ....++|+ |+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-----------------~~~~~~~~~--k~~~~~Ws-Dg 185 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-----------------PLETPLKDV--KFSGISWL-GN 185 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-----------------EEEEEEEEE--ESCCCEEE-TT
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-----------------CCccccCCc--eeccEEEe-CC
Confidence 3556788999999999998543 33579999999873 221 12111 12567899 99
Q ss_pred CEEEEEeCCC-------------eEEEEEcCCCe----EEEEEec-CCCCeEEEEEccCCCEEEEEeC----CCeEEEEE
Q 040062 138 SILASGSLDN-------------TIHIWNMSTGI----CTAVLRG-HSSLVKGVAWDPIGSFIASQSD----DKTVIIWR 195 (689)
Q Consensus 138 ~~Lasgs~Dg-------------~I~vwd~~~~~----~~~~l~~-h~~~V~~l~~spdg~~las~s~----Dg~I~iwd 195 (689)
+.|+.++.+. .|++|++.+.. ++..... |...+.++.|+|||++|+.... +..|++||
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d 265 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKD 265 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEE
Confidence 9999888774 49999998754 2333333 4556788999999998865442 35899999
Q ss_pred CCCCc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee--eeeecCCCCCEEEEEEcCC
Q 040062 196 TSDWS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA--TFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 196 ~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~h~~~v~~v~fsp~ 272 (689)
+.++. ....+..+... .... |+++|..|+.....+.....+..++...... ...+..|...+. .|+++
T Consensus 266 ~~~~~~~~~~l~~~~~~------~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~ 336 (693)
T 3iuj_A 266 LSQENAPLLTVQGDLDA------DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSG 336 (693)
T ss_dssp TTSTTCCCEEEECSSSS------CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEE
T ss_pred CCCCCCceEEEeCCCCc------eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEE
Confidence 97763 23333332211 2222 6777777776655444445555555544322 123445555544 66665
Q ss_pred ccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CCC--cEEEEeCCCCCceEEecccCCCCeEEEEEccCC
Q 040062 273 MFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDR--TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG 349 (689)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg 349 (689)
+ +.|+... .++ .|++||+..+ ....+.......+..+.+++++
T Consensus 337 g---------------------------------~~lv~~~~~~g~~~l~~~d~~g~-~~~~l~~p~~~~~~~~~~~~d~ 382 (693)
T 3iuj_A 337 S---------------------------------GYLFAEYMVDATARVEQFDYEGK-RVREVALPGLGSVSGFNGKHDD 382 (693)
T ss_dssp T---------------------------------TEEEEEEEETTEEEEEEECTTSC-EEEEECCSSSSEEEECCCCTTC
T ss_pred C---------------------------------CEEEEEEEECCeeEEEEEECCCC-eeEEeecCCCceEEeeecCCCC
Confidence 4 4454444 444 6889998754 3344433345567888889998
Q ss_pred CeEEEEeCC----CcEEEEEeecccc
Q 040062 350 YSLFACSLD----GTVANFHFEVKEL 371 (689)
Q Consensus 350 ~~L~sgs~D----G~I~vwd~~~~~l 371 (689)
..|+....+ +.|+.||+.+++.
T Consensus 383 ~~l~~~~ss~~tP~~l~~~d~~~g~~ 408 (693)
T 3iuj_A 383 PALYFGFENYAQPPTLYRFEPKSGAI 408 (693)
T ss_dssp SCEEEEEECSSSCCEEEEECTTTCCE
T ss_pred CEEEEEecCCCCCCEEEEEECCCCeE
Confidence 877766544 7899998876653
No 211
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.29 E-value=3.1e-09 Score=109.01 Aligned_cols=231 Identities=7% Similarity=0.038 Sum_probs=147.2
Q ss_pred CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEE
Q 040062 64 DHFGSVNCVRWAKH-GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILAS 142 (689)
Q Consensus 64 ~h~~~V~~v~fspd-g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Las 142 (689)
.+..---+..|+++ +.++++...++.|..||..++. . ..+ .....+.+++++++++++++
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~-----------------~-~~~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ-----------------V-QRV-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCC-----------------E-EEE-ECSSCEEEEEEBTTSSEEEE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCc-----------------E-EEE-eCCCceEEEEECCCCCEEEE
Confidence 34445678899995 4556666678999999998752 1 222 24567999999999995554
Q ss_pred EeCCCeEEEEEcCCCeEEEEEecC----CCCeEEEEEccCCCEEEEEeCC---------CeEEEEECCCCcceeeccCcc
Q 040062 143 GSLDNTIHIWNMSTGICTAVLRGH----SSLVKGVAWDPIGSFIASQSDD---------KTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 143 gs~Dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~las~s~D---------g~I~iwd~~~~~~~~~~~~~~ 209 (689)
. ++.|.+||..+++........ ...+..++++|+|+++++...+ ..-.||.+........+...
T Consensus 71 -~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~- 147 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ- 147 (297)
T ss_dssp -E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-
T ss_pred -E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-
Confidence 3 678999999887764443321 2357889999999977755322 23456655432222222111
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec--CCce-----eeeeecCCCCCEEEEEEcCCcccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER--GEWA-----ATFDFLGHNAPIIVVKFNHSMFRRNSASSQ 282 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~--~~~~-----~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~ 282 (689)
......++|+|+++.++.+.... ..+..++. .... ....+..+.+....+++.++
T Consensus 148 -----~~~pngi~~spdg~~lyv~~~~~---~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~---------- 209 (297)
T 3g4e_A 148 -----VDISNGLDWSLDHKIFYYIDSLS---YSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAE---------- 209 (297)
T ss_dssp -----ESBEEEEEECTTSCEEEEEEGGG---TEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTT----------
T ss_pred -----cccccceEEcCCCCEEEEecCCC---CcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCC----------
Confidence 12357899999999887765422 22333332 1111 11112222234455555554
Q ss_pred ccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEc-cCCCeEEEEeCC
Q 040062 283 EVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS-PDGYSLFACSLD 358 (689)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~L~sgs~D 358 (689)
+++.++...++.|.+||..+++.+..+.. +...+++++|. ||++.|++++..
T Consensus 210 -----------------------G~lwva~~~~~~v~~~d~~tG~~~~~i~~-p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 210 -----------------------GKLWVACYNGGRVIRLDPVTGKRLQTVKL-PVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp -----------------------SCEEEEEETTTEEEEECTTTCCEEEEEEC-SSSBEEEEEEESGGGCEEEEEEBC
T ss_pred -----------------------CCEEEEEcCCCEEEEEcCCCceEEEEEEC-CCCCceEEEEeCCCCCEEEEEcCC
Confidence 37777777788999999998988877764 35679999998 898888776643
No 212
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.22 E-value=1.6e-09 Score=114.02 Aligned_cols=264 Identities=8% Similarity=-0.026 Sum_probs=169.2
Q ss_pred EEEEcCCCCEEEEEe----------CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-------CcEEEEEEcCCCCE
Q 040062 18 SIDVQPGALRFATGG----------GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-------GSVNCVRWAKHGRY 80 (689)
Q Consensus 18 si~~spdg~~Latgs----------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-------~~V~~v~fspdg~~ 80 (689)
.+.++|||++|+++. .++.|.+||..+ .+.+.++.-.. ..-..++|+|||++
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t-----------~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~ 150 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVT-----------LLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 150 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTT-----------CCEEEEEEETTCCCCCBSCCGGGEEECTTSSE
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCC-----------CeEEEEEECCCccccccCCCCceEEEcCCCCE
Confidence 499999999888775 357899999987 55566553211 13456899999999
Q ss_pred EEEEeC--CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC-C
Q 040062 81 IASGSD--DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST-G 157 (689)
Q Consensus 81 Lasgs~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~-~ 157 (689)
|+.+.. ++.|.++|+.++ +.+.++.-.. + ...+....+.+++.+.||.+.+.++.+ +
T Consensus 151 lyVan~~~~~~VsVID~~t~-----------------~vv~tI~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g 210 (386)
T 3sjl_D 151 LLFYQFSPAPAVGVVDLEGK-----------------AFKRMLDVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEG 210 (386)
T ss_dssp EEEEECSSSCEEEEEETTTT-----------------EEEEEEECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSS
T ss_pred EEEEEcCCCCeEEEEECCCC-----------------cEEEEEECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCC
Confidence 888764 689999999987 5666664321 1 223433456777888899999999876 5
Q ss_pred eEEEEEecCC----CCeE-EEEEc-cCCCEEEEEeCCCeEEEEECCCCc--ceeeccCccc----ccCCcccEEEEEEcC
Q 040062 158 ICTAVLRGHS----SLVK-GVAWD-PIGSFIASQSDDKTVIIWRTSDWS--LAHRTDGHWA----KSLGSTFFRRLGWSP 225 (689)
Q Consensus 158 ~~~~~l~~h~----~~V~-~l~~s-pdg~~las~s~Dg~I~iwd~~~~~--~~~~~~~~~~----~~~~~~~i~~l~~sp 225 (689)
+.......+. .++. ...|. ++|++++ .+.+|+|.+.|+.+.. ....+..... ..........+++++
T Consensus 211 ~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~ 289 (386)
T 3sjl_D 211 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR 289 (386)
T ss_dssp CCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET
T ss_pred eEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC
Confidence 5433222111 2221 24564 5776555 5568999999997654 2222220000 000001123467799
Q ss_pred CCCeEEEecCC------CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCccccc
Q 040062 226 CGHFITTTHGF------QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 226 dg~~l~~~~~~------~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
+++.++..... ......+.+++..+.+....+.- ...+..+.|++++
T Consensus 290 ~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v-g~~~~~lavs~D~-------------------------- 342 (386)
T 3sjl_D 290 ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQDE-------------------------- 342 (386)
T ss_dssp TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECSSS--------------------------
T ss_pred CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC-CCCcceEEECCCC--------------------------
Confidence 99998887431 12235567778777766554432 2366788998886
Q ss_pred CccCCCCcEEEE-EeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccC
Q 040062 300 GKESQPYNVIAI-GSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPD 348 (689)
Q Consensus 300 ~~~s~~~~~las-gs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spd 348 (689)
..+|++ ...++.|.++|..+++.+..+.. ...-+.|.+++|
T Consensus 343 ------~~~ly~tn~~~~~VsViD~~t~k~~~~i~~--~~~p~~l~~s~d 384 (386)
T 3sjl_D 343 ------KPLLYALSTGDKTLYIHDAESGEELRSVNQ--LGHGPQVITTAD 384 (386)
T ss_dssp ------SCEEEEEETTTTEEEEEETTTCCEEEEECC--CCSSCCEEEECC
T ss_pred ------CeEEEEEcCCCCeEEEEECCCCcEEEEecC--CCCCceeEECCc
Confidence 124555 45589999999999999988875 344567777776
No 213
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.21 E-value=4.9e-09 Score=112.79 Aligned_cols=190 Identities=12% Similarity=0.067 Sum_probs=124.0
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ--VILI 92 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg--~I~i 92 (689)
....|+|+++++++++...++.|++||.+. ......... ..... ++|++++++|+++..++ .|.+
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~-----------g~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDD-----------NKVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTT-----------TEEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCC-----------CEEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEE
Confidence 678999999999888877789999999875 333333332 22233 99999999999988866 7888
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE----EecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV----LRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~----l~~h~ 167 (689)
|+...+... .....+.. +...+.+++++|++..|+.+..++.|+.||..++..... ..++.
T Consensus 199 ~d~~~~~~~--------------~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~ 264 (409)
T 3hrp_A 199 YMKASGWAP--------------TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSL 264 (409)
T ss_dssp EEGGGTTCE--------------EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCC
T ss_pred EEcCCCcee--------------EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCC
Confidence 887654210 11111222 456688999999655566677788999999987764332 22222
Q ss_pred CCe-E-EEEEccC-CCEEEEEeCCCeEEEEECCCCcceeeccCcc-c--------ccCCcccEEEEEEcCCCCeEEEe
Q 040062 168 SLV-K-GVAWDPI-GSFIASQSDDKTVIIWRTSDWSLAHRTDGHW-A--------KSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 168 ~~V-~-~l~~spd-g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~-~--------~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
..- . .++|+|+ +.++++-..++.|+.|+.... ...+.+.. . ..........++++++|+++++-
T Consensus 265 ~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad 340 (409)
T 3hrp_A 265 GTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVD 340 (409)
T ss_dssp CCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEE
T ss_pred CCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEe
Confidence 222 3 8999995 555666667789999987643 22221111 0 00012347889999999955553
No 214
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.21 E-value=2.8e-09 Score=109.34 Aligned_cols=238 Identities=11% Similarity=0.032 Sum_probs=149.7
Q ss_pred EecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 121 LRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 121 l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
+..+..-.....|++++. ++++...++.|+.||..+++.. .+. ....+.+++++++|+++++ . ++.|.+||..++
T Consensus 8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g 83 (297)
T 3g4e_A 8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ 83 (297)
T ss_dssp ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence 334455667899999655 5556667889999999887653 333 4578999999999996554 3 568999999877
Q ss_pred cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCC-------CccccceeecCCceeeeeecCCCCCEEEEEEcCC
Q 040062 200 SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK-------PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHS 272 (689)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~-------~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~ 272 (689)
+.......... .....+..+.++++|+++++...... ....+..++.... ...+..+......++|+|+
T Consensus 84 ~~~~~~~~~~~--~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 84 SAVVLATVDND--KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--VKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp EEEEEEECCTT--CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--EEEEEEEESBEEEEEECTT
T ss_pred cEEEEEecCCC--CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--EEEEeeccccccceEEcCC
Confidence 65433222111 12344788999999997776543221 1112222222211 1111122233456677766
Q ss_pred ccccccccccccccccccccCCcccccCccCCCCcEE-EEEeCCCcEEEEeC--CCCCce--EEec--ccCCCCeEEEEE
Q 040062 273 MFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDRTITVWTT--ASPRPL--FVAK--HFFTQSVVDLSW 345 (689)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg~I~iwd~--~~~~~~--~~~~--~~h~~~V~~l~~ 345 (689)
+ +.| ++.+.++.|.+||+ .++... ..+. ..+...+..+++
T Consensus 160 g---------------------------------~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~ 206 (297)
T 3g4e_A 160 H---------------------------------KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCI 206 (297)
T ss_dssp S---------------------------------CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEE
T ss_pred C---------------------------------CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEE
Confidence 4 544 55566788999987 444321 1111 112356789999
Q ss_pred ccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC-chhhhhHhhcc
Q 040062 346 SPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET-PAQLLLEAASA 412 (689)
Q Consensus 346 spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S-pdg~~Las~s~ 412 (689)
+++|++.++...++.|.+||.+++++...+. .+...+++++|+ ||+..|..++.
T Consensus 207 d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~-------------~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 207 DAEGKLWVACYNGGRVIRLDPVTGKRLQTVK-------------LPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BTTSCEEEEEETTTEEEEECTTTCCEEEEEE-------------CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred CCCCCEEEEEcCCCEEEEEcCCCceEEEEEE-------------CCCCCceEEEEeCCCCCEEEEEcC
Confidence 9999877777778889999998777654332 123468999998 88876655443
No 215
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.18 E-value=4.6e-09 Score=108.09 Aligned_cols=236 Identities=11% Similarity=0.007 Sum_probs=144.1
Q ss_pred eeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC
Q 040062 58 LLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD 136 (689)
Q Consensus 58 ~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd 136 (689)
.+..+..+........|+++|+ ++++...++.|..|+.. + . ...+..+...+..++++++
T Consensus 36 ~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g-----------------~-~~~~~~~~~~~~gl~~d~d 96 (305)
T 3dr2_A 36 RLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G-----------------T-VDVLLDATAFTNGNAVDAQ 96 (305)
T ss_dssp CCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S-----------------C-EEEEEESCSCEEEEEECTT
T ss_pred ceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C-----------------C-EEEEeCCCCccceeeECCC
Confidence 3444555666788999999998 56677778999999873 3 1 2334446677999999999
Q ss_pred CCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeEEEEEccCCCEEEE----EeC-------------CCeEEEEE
Q 040062 137 DSILASGSLDNTIHIWNMSTGICTAVLRGH----SSLVKGVAWDPIGSFIAS----QSD-------------DKTVIIWR 195 (689)
Q Consensus 137 g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~las----~s~-------------Dg~I~iwd 195 (689)
|+++++...++.|.+||.. ++........ ...+..++++++|+++++ +.. .+.|..||
T Consensus 97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9977666666899999985 5543322211 134678999999998886 321 24577777
Q ss_pred CCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC--ccccceeecCCce--eeeee-cCCCCCEEEEEEc
Q 040062 196 TSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP--RHSAPVLERGEWA--ATFDF-LGHNAPIIVVKFN 270 (689)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~--~~~~~i~~~~~~~--~~~~l-~~h~~~v~~v~fs 270 (689)
..+++..... .. .....++|+||++.|+.+...... ...+..++..... ....+ ....+....+++
T Consensus 176 ~~~g~~~~~~--~~------~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~- 246 (305)
T 3dr2_A 176 PDGSPLQRMA--DL------DHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCV- 246 (305)
T ss_dssp SSSCCCEEEE--EE------SSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEE-
T ss_pred CCCCcEEEEe--cC------CCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEE-
Confidence 7666544332 11 225789999999988877543110 1223333322110 00000 000111112222
Q ss_pred CCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCC
Q 040062 271 HSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGY 350 (689)
Q Consensus 271 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~ 350 (689)
.+++++.+ +..+ .|.+|+. .++.+..+... ..+.+++|+++++
T Consensus 247 --------------------------------d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~~--~~~~~~~f~~d~~ 289 (305)
T 3dr2_A 247 --------------------------------DRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPTP--GTASNCTFDQAQQ 289 (305)
T ss_dssp --------------------------------CTTSCEEE-CCSS-EEEEECT-TSCEEEEEECS--SCCCEEEECTTSC
T ss_pred --------------------------------CCCCCEEE-ecCC-cEEEECC-CCCEEEEEECC--CceeEEEEeCCCC
Confidence 33456444 4444 4999997 46666655542 3589999999999
Q ss_pred eEEEEeCCC
Q 040062 351 SLFACSLDG 359 (689)
Q Consensus 351 ~L~sgs~DG 359 (689)
.|+.++.++
T Consensus 290 ~L~it~~~~ 298 (305)
T 3dr2_A 290 RLFITGGPC 298 (305)
T ss_dssp EEEEEETTE
T ss_pred EEEEEcCCe
Confidence 999888764
No 216
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.17 E-value=1.1e-09 Score=115.50 Aligned_cols=270 Identities=10% Similarity=-0.081 Sum_probs=164.3
Q ss_pred CCCEEEEE-eCCC----eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEe----------CCC
Q 040062 24 GALRFATG-GGDH----KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGS----------DDQ 88 (689)
Q Consensus 24 dg~~Latg-s~Dg----~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs----------~Dg 88 (689)
+..++++. ..++ .|.++|..+ .+.+.++.....+ .+.|+||+++|+.+. .++
T Consensus 30 ~~~~~yV~~~~~~~~~d~vsvID~~t-----------~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~ 96 (368)
T 1mda_H 30 ISRRSHITLPAYFAGTTENWVSCAGC-----------GVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTT-----------TEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred CCCeEEEECCccCCccceEEEEECCC-----------CeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCC
Confidence 33444444 3344 888999987 7888888755556 799999999888886 368
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-------CCCEEEEEEcCCCCEEEEEeC--CCeEEE--EEcCCC
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-------TADVVDLNWSPDDSILASGSL--DNTIHI--WNMSTG 157 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~l~~spdg~~Lasgs~--Dg~I~v--wd~~~~ 157 (689)
.|.+||+.++ +.+.++..+ ......++|+|||++|+++.. +..|.+ +|+.+
T Consensus 97 ~VsviD~~T~-----------------~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t- 158 (368)
T 1mda_H 97 YVEVFDPVTF-----------------LPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD- 158 (368)
T ss_dssp EEEEECTTTC-----------------CEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE-
T ss_pred EEEEEECCCC-----------------CEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh-
Confidence 8999999988 556665432 134568999999999998875 467888 99877
Q ss_pred eEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCC-----CcceeeccCcccccCCcccEEEEEEcCCCCeEE
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSD-----WSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFIT 231 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~ 231 (689)
+..+..... +.+.|++ ..+++.+.|+.+.+.|+.+ ++...... .... .+.... . ++++..++
T Consensus 159 --v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t-~~i~-vg~~P~---~-~~~~~~~~ 226 (368)
T 1mda_H 159 --DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT-GAQN-CSSQAA---Q-ANYPGMLV 226 (368)
T ss_dssp --EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC-TTSC-BCSCCE---E-ETTTTEEE
T ss_pred --ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee-eeee-CCCCcc---c-cccCCEEE
Confidence 444442111 2234544 3455667788888889876 43332111 0000 111112 3 55555444
Q ss_pred EecCCCCCccccceeecCCce----eeeeecC-----C---CCCEEEEEEcCCccccccccccccccccccccCCccccc
Q 040062 232 TTHGFQKPRHSAPVLERGEWA----ATFDFLG-----H---NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIG 299 (689)
Q Consensus 232 ~~~~~~~~~~~~~i~~~~~~~----~~~~l~~-----h---~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (689)
.... ..+.+++..... ..+.+.. + ......+.|++++
T Consensus 227 ~vs~-----~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg-------------------------- 275 (368)
T 1mda_H 227 WAVA-----SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT-------------------------- 275 (368)
T ss_dssp ECBS-----SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTT--------------------------
T ss_pred EEcC-----CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCC--------------------------
Confidence 4332 233333332110 0000000 0 0001113455554
Q ss_pred CccCCCCcEEEEEeC---------CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCe-EEEEe-CCCcEEEEEeec
Q 040062 300 GKESQPYNVIAIGSQ---------DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYS-LFACS-LDGTVANFHFEV 368 (689)
Q Consensus 300 ~~~s~~~~~lasgs~---------Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~-L~sgs-~DG~I~vwd~~~ 368 (689)
+.++.+.. ++.+.++|+.+.+.+..+.. ......++|+|||++ +++.. .++.|.++|+.+
T Consensus 276 -------~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v--g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 276 -------DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN--GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp -------TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred -------CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC--CCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 44554322 23566999999998877764 336899999999985 45555 499999999999
Q ss_pred cccccccC
Q 040062 369 KELGHRLS 376 (689)
Q Consensus 369 ~~l~~~l~ 376 (689)
.+....+.
T Consensus 347 ~kvv~~I~ 354 (368)
T 1mda_H 347 DQDQSSVE 354 (368)
T ss_dssp CEEEEECC
T ss_pred CcEEEEEE
Confidence 98876553
No 217
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.16 E-value=2.1e-09 Score=124.04 Aligned_cols=198 Identities=10% Similarity=0.066 Sum_probs=127.0
Q ss_pred ceEEEEEEcCCCCEEEEEe-----CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcE--EEEEEcCCCCEEEEEeC
Q 040062 14 MQIFSIDVQPGALRFATGG-----GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSV--NCVRWAKHGRYIASGSD 86 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs-----~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V--~~v~fspdg~~Lasgs~ 86 (689)
..|..+.|||||++||.+. .+..|++||+++ ++.+.. +...+ ..++|+ ||+.|+.++.
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~t-----------g~~~~~---~~~~~k~~~~~Ws-Dg~~l~y~~~ 193 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVES-----------KQPLET---PLKDVKFSGISWL-GNEGFFYSSY 193 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTT-----------CSEEEE---EEEEEESCCCEEE-TTTEEEEEES
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCC-----------CCCCcc---ccCCceeccEEEe-CCCEEEEEEe
Confidence 4788999999999998543 235799999987 333221 11122 567899 9999999888
Q ss_pred CC-------------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEEcCCCCEEEEEeC----CCe
Q 040062 87 DQ-------------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNWSPDDSILASGSL----DNT 148 (689)
Q Consensus 87 Dg-------------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~spdg~~Lasgs~----Dg~ 148 (689)
+. .|++|++.++... -..+..... |...+..+.|+||+++|+.... ++.
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------------~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 194 DKPDGSELSARTDQHKVYFHRLGTAQED-------------DRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp SCCC-------CCCCEEEEEETTSCGGG-------------CEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred cCcccccccccCCCcEEEEEECCCCccc-------------ceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 74 3899998765310 023333333 4556789999999998765442 358
Q ss_pred EEEEEcCCCe-EEEEEecCCCCeEEEEEccCCCEEEEEe-CC---CeEEEEECCCCcc--eeeccCcccccCCcccEEEE
Q 040062 149 IHIWNMSTGI-CTAVLRGHSSLVKGVAWDPIGSFIASQS-DD---KTVIIWRTSDWSL--AHRTDGHWAKSLGSTFFRRL 221 (689)
Q Consensus 149 I~vwd~~~~~-~~~~l~~h~~~V~~l~~spdg~~las~s-~D---g~I~iwd~~~~~~--~~~~~~~~~~~~~~~~i~~l 221 (689)
|++||+.++. ....+..+....... |++++..|+..+ .+ +.|..+|+.++.. ...+..+... +.
T Consensus 261 i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~------~~-- 331 (693)
T 3iuj_A 261 LYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQ------VL-- 331 (693)
T ss_dssp EEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSS------CE--
T ss_pred EEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCC------EE--
Confidence 9999997763 344555566665555 667776555444 33 6799999987654 1223222211 22
Q ss_pred EEcCCCCeEEEecCCCCCccccceeecC
Q 040062 222 GWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 222 ~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
.|++++++|+.....+. ...+.+++..
T Consensus 332 ~~s~~g~~lv~~~~~~g-~~~l~~~d~~ 358 (693)
T 3iuj_A 332 TVHSGSGYLFAEYMVDA-TARVEQFDYE 358 (693)
T ss_dssp EEEEETTEEEEEEEETT-EEEEEEECTT
T ss_pred EEEEECCEEEEEEEECC-eeEEEEEECC
Confidence 88999998887654332 2344455443
No 218
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.14 E-value=1.3e-09 Score=116.75 Aligned_cols=265 Identities=10% Similarity=-0.007 Sum_probs=167.7
Q ss_pred CCCCEEEEEeCC-----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe------
Q 040062 76 KHGRYIASGSDD-----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS------ 144 (689)
Q Consensus 76 pdg~~Lasgs~D-----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs------ 144 (689)
+++++++.+... +.|.++|+.+. +.+..+..-..+ .++++||+++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~-----------------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~ 142 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG-----------------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERI 142 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT-----------------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEET
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC-----------------EEEEEEECCCCC--ceEECCCCCEEEEEecccccc
Confidence 466766655442 69999999987 677777655555 899999999888776
Q ss_pred ----CCCeEEEEEcCCCeEEEEEecC-------CCCeEEEEEccCCCEEEEEeC--CCeEEEEECCCCcceeeccCcccc
Q 040062 145 ----LDNTIHIWNMSTGICTAVLRGH-------SSLVKGVAWDPIGSFIASQSD--DKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 145 ----~Dg~I~vwd~~~~~~~~~l~~h-------~~~V~~l~~spdg~~las~s~--Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
.++.|.++|..+++.+..+.-. ......+.|+|||++|+++.. ++.|.++|+.+++.+..+......
T Consensus 143 ~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~ 222 (426)
T 3c75_H 143 ARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCY 222 (426)
T ss_dssp TEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEE
T ss_pred ccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCce
Confidence 3678999999999998887532 234567899999999998874 578999999999988877643210
Q ss_pred cC-CcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCE-EEEEEcCCccccccccccccccccc
Q 040062 212 SL-GSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPI-IVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 212 ~~-~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v-~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
.. ....-.-+.++++|+.++.....+...... . ..+.. ...++ ..+.|.+
T Consensus 223 ~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~----~----~~~~v--~~~p~~~~~~~~~------------------ 274 (426)
T 3c75_H 223 HIFPASPTVFYMNCRDGSLARVDFADGETKVTN----T----EVFHT--EDELLINHPAFSL------------------ 274 (426)
T ss_dssp EEEEEETTEEEEEETTSSEEEEECCTTCCEEEE----C----CCCSC--TTSCBCSCCEECT------------------
T ss_pred eeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe----e----eeecc--CCCceeeEeeecC------------------
Confidence 00 000012255677777776654211111000 0 00000 00010 0122233
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEE----ecc-------cCCCCeEEEEEccCCCeEEEEeC-
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFV----AKH-------FFTQSVVDLSWSPDGYSLFACSL- 357 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~----~~~-------~h~~~V~~l~~spdg~~L~sgs~- 357 (689)
++..++.....+.|.+.|+........ +.. ........++++||++.|++...
T Consensus 275 ---------------dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~ 339 (426)
T 3c75_H 275 ---------------RSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQ 339 (426)
T ss_dssp ---------------TTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEE
T ss_pred ---------------CCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecc
Confidence 334555556778899999865432211 000 00111223789999998888653
Q ss_pred ---------CCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhh-hhHhhc-cccce
Q 040062 358 ---------DGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQL-LLEAAS-AKETT 416 (689)
Q Consensus 358 ---------DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~-~Las~s-~DG~v 416 (689)
++.|.++|+.+.+....+.. ......++|+|||+ +|+++. .+++|
T Consensus 340 ~~~gthk~~s~~VsVID~~T~kvv~~I~v--------------g~~P~gia~spDg~~~lyv~n~~s~~V 395 (426)
T 3c75_H 340 RDEWKHKAASRFVVVLNAETGERINKIEL--------------GHEIDSINVSQDAEPLLYALSAGTQTL 395 (426)
T ss_dssp CCTTCTTSCEEEEEEEETTTCCEEEEEEE--------------EEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred cccccccCCCCEEEEEECCCCeEEEEEEC--------------CCCcCeEEEccCCCEEEEEEcCCCCeE
Confidence 35799999999887765431 12479999999998 777777 58888
No 219
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=5.2e-08 Score=101.31 Aligned_cols=223 Identities=9% Similarity=-0.022 Sum_probs=138.4
Q ss_pred cEEEEEEcCCC-CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 68 SVNCVRWAKHG-RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 68 ~V~~v~fspdg-~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
...+.+|+|++ .++++...++.|..||..++ +. ..+. ....+.+++|+++++++++. +
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~-----------------~~-~~~~-~~~~v~~i~~~~dg~l~v~~--~ 108 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASG-----------------RK-TVHA-LPFMGSALAKISDSKQLIAS--D 108 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTT-----------------EE-EEEE-CSSCEEEEEEEETTEEEEEE--T
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCC-----------------cE-EEEE-CCCcceEEEEeCCCeEEEEE--C
Confidence 35678899975 45566667889999998875 22 2222 34679999999999877654 3
Q ss_pred CeEEEEEcCCCeEEEEEecC----CCCeEEEEEccCCCEEEEEeC------CCeEEEEECCCCcceeeccCcccccCCcc
Q 040062 147 NTIHIWNMSTGICTAVLRGH----SSLVKGVAWDPIGSFIASQSD------DKTVIIWRTSDWSLAHRTDGHWAKSLGST 216 (689)
Q Consensus 147 g~I~vwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~las~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 216 (689)
..|.+||..+++........ ...+..++++|+|+++++... .+.|..++ +++...... . ..
T Consensus 109 ~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~-~------~~ 179 (326)
T 2ghs_A 109 DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFA-D------IS 179 (326)
T ss_dssp TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEE-E------ES
T ss_pred CCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeC-C------Cc
Confidence 45999999888764433211 235889999999997776542 24455555 443322211 1 12
Q ss_pred cEEEEEEcCCCCeEEEecCCCCCccccceeecC--Cc-e-----eeeeecCCCCCEEEEEEcCCcccccccccccccccc
Q 040062 217 FFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG--EW-A-----ATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAP 288 (689)
Q Consensus 217 ~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~--~~-~-----~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~ 288 (689)
....++|+|+++.++.+.... ..+.+++.. .. . ....+.........+++.++
T Consensus 180 ~~~~i~~s~dg~~lyv~~~~~---~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~---------------- 240 (326)
T 2ghs_A 180 IPNSICFSPDGTTGYFVDTKV---NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAE---------------- 240 (326)
T ss_dssp SEEEEEECTTSCEEEEEETTT---CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTT----------------
T ss_pred ccCCeEEcCCCCEEEEEECCC---CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCC----------------
Confidence 257899999999887764322 233444432 11 1 01111112233344444444
Q ss_pred ccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEc-cCCCeEEEEeCC
Q 040062 289 VGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWS-PDGYSLFACSLD 358 (689)
Q Consensus 289 ~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-pdg~~L~sgs~D 358 (689)
++++++...++.|.+||. +++.+..+.. +...+++++|+ +++..|++++..
T Consensus 241 -----------------G~lwva~~~~~~v~~~d~-~g~~~~~i~~-~~~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 241 -----------------GHIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp -----------------SCEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEESTTSCEEEEEEBC
T ss_pred -----------------CCEEEEEeCCCEEEEECC-CCCEEEEEEC-CCCCcEEEEEecCCCCEEEEEecC
Confidence 467776666788999998 5666555543 35579999998 888877766544
No 220
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.12 E-value=1.5e-09 Score=114.70 Aligned_cols=135 Identities=8% Similarity=-0.007 Sum_probs=109.0
Q ss_pred eeecCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 9 VRHEGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 9 ~~H~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
..+. . |+.|+| |+++|+++ .++.|++||+.. .........|...|.++.+.+.. +++++.||
T Consensus 85 ~~lp-~-V~~l~f--d~~~L~v~-~~~~l~v~dv~s-----------l~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG 146 (388)
T 1xip_A 85 KEIP-D-VIFVCF--HGDQVLVS-TRNALYSLDLEE-----------LSEFRTVTSFEKPVFQLKNVNNT--LVILNSVN 146 (388)
T ss_dssp EECT-T-EEEEEE--ETTEEEEE-ESSEEEEEESSS-----------TTCEEEEEECSSCEEEEEECSSE--EEEEETTS
T ss_pred eeCC-C-eeEEEE--CCCEEEEE-cCCcEEEEEchh-----------hhccCccceeecceeeEEecCCC--EEEEECCC
Confidence 4555 4 999999 99999999 779999999987 22333455667778998887653 88899999
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE--EEEE---
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC--TAVL--- 163 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~--~~~l--- 163 (689)
.|.+||+..+. ... +...|+|++|||+| ++.|..||.|++|+...++. ...+
T Consensus 147 ~L~v~dl~~~~-----------------~~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 147 DLSALDLRTKS-----------------TKQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp EEEEEETTTCC-----------------EEE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CEEEEEccCCc-----------------ccc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 99999998762 221 44589999999999 78899999999999988775 5566
Q ss_pred ---e---cCCCCeEEEEEccCCCEEEE
Q 040062 164 ---R---GHSSLVKGVAWDPIGSFIAS 184 (689)
Q Consensus 164 ---~---~h~~~V~~l~~spdg~~las 184 (689)
. +|...|.+|+|.+++.+|++
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 37889999999999998886
No 221
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=2.1e-08 Score=106.31 Aligned_cols=154 Identities=13% Similarity=0.166 Sum_probs=106.4
Q ss_pred EEc--CCCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeec-------CCCCcEEEEEEcCCCCEEEEEeCC--
Q 040062 20 DVQ--PGALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLR-------DHFGSVNCVRWAKHGRYIASGSDD-- 87 (689)
Q Consensus 20 ~~s--pdg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~v~fspdg~~Lasgs~D-- 87 (689)
.++ +++++|++.+ .++.|+|+|+.+. +...+...++. .....-..+..+|+| +++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~-------p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~ 159 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPN-------PREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEE 159 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSC-------TTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETT
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCC-------CCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcC
Confidence 346 8888877655 5789999999752 12245555552 111245667889999 77776655
Q ss_pred ----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC--C-CCEEEEEEcCCCCEEEEEe----------------
Q 040062 88 ----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH--T-ADVVDLNWSPDDSILASGS---------------- 144 (689)
Q Consensus 88 ----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--~-~~V~~l~~spdg~~Lasgs---------------- 144 (689)
+.|.++|..+. +.+.++... . .--.++.|+|+++.+++..
T Consensus 160 g~~~g~v~vlD~~T~-----------------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~ 222 (462)
T 2ece_A 160 GEGPGGILMLDHYSF-----------------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHL 222 (462)
T ss_dssp SCSCCEEEEECTTTC-----------------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTH
T ss_pred CCCCCeEEEEECCCC-----------------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhh
Confidence 78999999887 444444321 1 2234688899999888874
Q ss_pred ---CCCeEEEEEcCCCeEEEEEecCC--CCeEEEEE--ccCCCEEEEEe------CCCeEEEEECCC
Q 040062 145 ---LDNTIHIWNMSTGICTAVLRGHS--SLVKGVAW--DPIGSFIASQS------DDKTVIIWRTSD 198 (689)
Q Consensus 145 ---~Dg~I~vwd~~~~~~~~~l~~h~--~~V~~l~~--spdg~~las~s------~Dg~I~iwd~~~ 198 (689)
.+.+|.+||+.+++.+..+.... .....|.| +|+++++++++ .+++|.+|..+.
T Consensus 223 ~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 223 KDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp HHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred hhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 36899999999998888887531 34456666 99999888776 456888877654
No 222
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.06 E-value=2.9e-08 Score=102.06 Aligned_cols=218 Identities=11% Similarity=0.044 Sum_probs=136.1
Q ss_pred ceEEEEEEcCCCC-EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGAL-RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~-~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
.......|+|+|+ +++++..++.|..|+... + ...+..+...+.+++|+++|+++++...++.|.+
T Consensus 45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g------------~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG------------T-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS------------C-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC------------C-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 3567899999998 556666789999998742 2 2344456677999999999997776666688999
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEE-EEec-CCCCEEEEEEcCCCCEEEE----EeC-------------CCeEEEEE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAM-TLRG-HTADVVDLNWSPDDSILAS----GSL-------------DNTIHIWN 153 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~l~~spdg~~Las----gs~-------------Dg~I~vwd 153 (689)
|+.+ +.. ..+. ...+ ....+.+++++++|+++++ |.. .+.|..||
T Consensus 112 ~~~~-g~~---------------~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d 175 (305)
T 3dr2_A 112 SDAD-GQA---------------HLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLP 175 (305)
T ss_dssp ECTT-SCE---------------EEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEEC
T ss_pred ECCC-CCE---------------EEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEc
Confidence 9875 321 1111 1111 1234678999999998876 332 25688888
Q ss_pred cCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 154 MSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD------KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 154 ~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
..+++..... .......++|+|+++.|+.+... +.|.+|++.... +........ ........+.++++|
T Consensus 176 ~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~--~~~~~pdgi~~d~~G 250 (305)
T 3dr2_A 176 PDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFAS--VPDGLPDGFCVDRGG 250 (305)
T ss_dssp SSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEEC--CSSSCCCSEEECTTS
T ss_pred CCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEE--CCCCCCCeEEECCCC
Confidence 8766654433 34567889999999988777665 689999987544 111100000 011124568899999
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCc
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSM 273 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~ 273 (689)
++.++. . ..+.+++.. ......+..+. .+..++|.+++
T Consensus 251 ~lwv~~-~-----~gv~~~~~~-g~~~~~~~~~~-~~~~~~f~~d~ 288 (305)
T 3dr2_A 251 WLWSSS-G-----TGVCVFDSD-GQLLGHIPTPG-TASNCTFDQAQ 288 (305)
T ss_dssp CEEECC-S-----SEEEEECTT-SCEEEEEECSS-CCCEEEECTTS
T ss_pred CEEEec-C-----CcEEEECCC-CCEEEEEECCC-ceeEEEEeCCC
Confidence 955543 2 124455542 22222222222 46677777554
No 223
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.06 E-value=4.9e-08 Score=101.47 Aligned_cols=229 Identities=13% Similarity=-0.012 Sum_probs=141.2
Q ss_pred CEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 127 DVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 127 ~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
......|++++. ++++...++.|.+||..+++.. .+. ....+.+++|+++|+++++. .+ .|.+||..+++.....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE-EEE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 356788999855 5556667889999999887653 333 35679999999999877754 44 5999999887654332
Q ss_pred cCcccccCCcccEEEEEEcCCCCeEEEecCCCC--CccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 206 DGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQK--PRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 206 ~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~--~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.... ......+..+.++++|+++++...... ....+..++ ..... .+..+......++|++++
T Consensus 126 ~~~~--~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s~dg---------- 190 (326)
T 2ghs_A 126 ELES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFSPDG---------- 190 (326)
T ss_dssp CSST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEECTTS----------
T ss_pred eCCC--CCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEcCCC----------
Confidence 2111 011235789999999997766532211 112233333 11111 111122344567777665
Q ss_pred cccccccccCCcccccCccCCCCcEE-EEEeCCCcEEEEeCC--CC-Cce--EEec--ccCCCCeEEEEEccCCCeEEEE
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVI-AIGSQDRTITVWTTA--SP-RPL--FVAK--HFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~l-asgs~Dg~I~iwd~~--~~-~~~--~~~~--~~h~~~V~~l~~spdg~~L~sg 355 (689)
+.+ ++...++.|.+||+. ++ ... ..+. ......+..++++++|.++++.
T Consensus 191 -----------------------~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~ 247 (326)
T 2ghs_A 191 -----------------------TTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNAR 247 (326)
T ss_dssp -----------------------CEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEE
T ss_pred -----------------------CEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEE
Confidence 544 444557899999986 55 321 1111 1123457889999999877777
Q ss_pred eCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC-chhhhhHhhc
Q 040062 356 SLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET-PAQLLLEAAS 411 (689)
Q Consensus 356 s~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S-pdg~~Las~s 411 (689)
..++.|.+|+. .++....+ ..+...+.+++|+ +|+..|..++
T Consensus 248 ~~~~~v~~~d~-~g~~~~~i-------------~~~~~~~~~~af~g~d~~~L~vt~ 290 (326)
T 2ghs_A 248 WGEGAVDRYDT-DGNHIARY-------------EVPGKQTTCPAFIGPDASRLLVTS 290 (326)
T ss_dssp ETTTEEEEECT-TCCEEEEE-------------ECSCSBEEEEEEESTTSCEEEEEE
T ss_pred eCCCEEEEECC-CCCEEEEE-------------ECCCCCcEEEEEecCCCCEEEEEe
Confidence 66788999987 44443222 1223358999998 8876665443
No 224
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.04 E-value=1.1e-08 Score=117.36 Aligned_cols=152 Identities=12% Similarity=0.095 Sum_probs=97.6
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc----------E-EEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS----------V-NCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~----------V-~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+..|++++.++.|+-+|..+ ++.+-++..+... + ..+.+ .+..|+.++.|+.|..+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~t-----------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~Al 136 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARD-----------GRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAI 136 (689)
T ss_dssp TTEEEEECGGGCEEEEETTT-----------CCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CCEEEEEcCCCeEEEEECCC-----------CceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEE
Confidence 55777788889999999987 5555555432210 0 01122 35678888999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEec--CCCCEEEEEEcC---CCCEEEEEe------CCCeEEEEEcCCCeEEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRG--HTADVVDLNWSP---DDSILASGS------LDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~l~~sp---dg~~Lasgs------~Dg~I~vwd~~~~~~~~~ 162 (689)
|..+++.. -.+.. +......+..+| ++. ++++. .++.|+.||..+|+.+..
T Consensus 137 Da~TG~~~-----------------W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~ 198 (689)
T 1yiq_A 137 DAKTGQRA-----------------WSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR 198 (689)
T ss_dssp ETTTCCEE-----------------EEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred ECCCCCEe-----------------eeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence 99998532 22221 110000111111 443 44443 378999999999999887
Q ss_pred EecCC-------------------------------CCeEEEEEccCCCEEEEEeCCCe-------------------EE
Q 040062 163 LRGHS-------------------------------SLVKGVAWDPIGSFIASQSDDKT-------------------VI 192 (689)
Q Consensus 163 l~~h~-------------------------------~~V~~l~~spdg~~las~s~Dg~-------------------I~ 192 (689)
+.... .....++++|+..+++.+..++. |.
T Consensus 199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~ 278 (689)
T 1yiq_A 199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV 278 (689)
T ss_dssp EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence 75210 01125788998899998887764 99
Q ss_pred EEECCCCcceeeccC
Q 040062 193 IWRTSDWSLAHRTDG 207 (689)
Q Consensus 193 iwd~~~~~~~~~~~~ 207 (689)
.||.++++.+..++.
T Consensus 279 AlD~~TG~~~W~~~~ 293 (689)
T 1yiq_A 279 AVNADTGEYVWHYQT 293 (689)
T ss_dssp EEETTTCCEEEEEES
T ss_pred EEEccCCceeEeeec
Confidence 999999999887754
No 225
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.99 E-value=9.8e-09 Score=117.65 Aligned_cols=332 Identities=9% Similarity=-0.033 Sum_probs=176.8
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCc-----------EEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGS-----------VNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~-----------V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
+..|++++.++.|+-+|..+ ++.+.++...... ...+++ ++..|+.++.|+.|..+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~t-----------G~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~al 143 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRT-----------GNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIAL 143 (677)
T ss_dssp TTEEEEECGGGCEEEEETTT-----------TEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEE
T ss_pred CCEEEEECCCCeEEEEECCC-----------CcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEE
Confidence 45677777788999999887 5555555432110 012222 45678888999999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecC-C----CCEEE-EEEcCCCCEEEEEeC------CCeEEEEEcCCCeEEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-T----ADVVD-LNWSPDDSILASGSL------DNTIHIWNMSTGICTA 161 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~----~~V~~-l~~spdg~~Lasgs~------Dg~I~vwd~~~~~~~~ 161 (689)
|..+++ .+-.+..+ . ..+.. ... .+..+++++. ++.|+.||..+++.+.
T Consensus 144 D~~tG~-----------------~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W 204 (677)
T 1kb0_A 144 DAATGK-----------------EVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW 204 (677)
T ss_dssp ETTTCC-----------------EEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred ECCCCC-----------------EEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence 999984 33333322 1 11111 111 1334555443 7999999999999998
Q ss_pred EEecCCCC--------------------------------eEEEEEccCCCEEEEEeCCC-------------------e
Q 040062 162 VLRGHSSL--------------------------------VKGVAWDPIGSFIASQSDDK-------------------T 190 (689)
Q Consensus 162 ~l~~h~~~--------------------------------V~~l~~spdg~~las~s~Dg-------------------~ 190 (689)
.+...... ...++++|++..++.+..++ .
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s 284 (677)
T 1kb0_A 205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS 284 (677)
T ss_dssp EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence 87643211 12578899999888887664 5
Q ss_pred EEEEECCCCcceeeccCcccccC---CcccEEEEEEcCCC---CeEEEecCCCCCccccceeecCCceeeeeecCCC-CC
Q 040062 191 VIIWRTSDWSLAHRTDGHWAKSL---GSTFFRRLGWSPCG---HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN-AP 263 (689)
Q Consensus 191 I~iwd~~~~~~~~~~~~~~~~~~---~~~~i~~l~~spdg---~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~-~~ 263 (689)
|..+|.++++.+..++....... ......-+....+| ..++.+.. ...+.+++..+.+....+.... ..
T Consensus 285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~----~G~l~~lD~~tG~~l~~~~~~~~~~ 360 (677)
T 1kb0_A 285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPK----NGFFFVLDRTNGKFISAKNFVPVNW 360 (677)
T ss_dssp EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCT----TSEEEEEETTTCCEEEEEESSCCSS
T ss_pred EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECC----CCEEEEEECCCCCEeccccccccCc
Confidence 99999999998887654221100 00011112222355 34444332 2344455554443332221110 00
Q ss_pred EEEEEEcCCcccccccc---ccccccccccccCCcccccCccCCCCcEEEEEe---------------------------
Q 040062 264 IIVVKFNHSMFRRNSAS---SQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS--------------------------- 313 (689)
Q Consensus 264 v~~v~fsp~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs--------------------------- 313 (689)
...+. ..+....... ......................+++..++++..
T Consensus 361 ~~~~d--~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 361 ASGYD--KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp EEEEC--TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred ccccC--CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccc
Confidence 00000 0000000000 000000000000000000111122223333322
Q ss_pred ----------------CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccCh
Q 040062 314 ----------------QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSD 377 (689)
Q Consensus 314 ----------------~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~ 377 (689)
..+.|..||+.+++.+..... ...+....++.++.++++++.||.+++||..+++.+..+..
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPT 516 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeC
Confidence 137899999999998887754 34455566777888999999999999999999998765431
Q ss_pred HHHHHHHHhccCCccCceeeeecCchhhhhH
Q 040062 378 AELDELKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 378 ~~~~~~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
+ +.....-+.|+.+|+.++
T Consensus 517 -----------~-~~~~~~p~~y~~~G~~~v 535 (677)
T 1kb0_A 517 -----------G-TGVVAAPSTYMVDGRQYV 535 (677)
T ss_dssp -----------S-SCCCSCCEEEEETTEEEE
T ss_pred -----------C-CCcccCCEEEEeCCEEEE
Confidence 1 111234556667775443
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.98 E-value=1.2e-08 Score=106.89 Aligned_cols=278 Identities=8% Similarity=-0.014 Sum_probs=152.1
Q ss_pred eEEEEEecCCCCEEEEEEcCCCCEEEEEe--CCCeEEEEEcCCCeEEEEE-------ecCCCCeEEEEEccCCCEEEEEe
Q 040062 116 KVAMTLRGHTADVVDLNWSPDDSILASGS--LDNTIHIWNMSTGICTAVL-------RGHSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 116 ~~~~~l~~h~~~V~~l~~spdg~~Lasgs--~Dg~I~vwd~~~~~~~~~l-------~~h~~~V~~l~~spdg~~las~s 186 (689)
+.+..+. .....++++++|+++++.. .++.++||.+.+++.. .+ ..|...+.+++++++++++++-.
T Consensus 10 ~~v~~~~---~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~ 85 (343)
T 2qe8_A 10 EVVAELS---LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDN 85 (343)
T ss_dssp EEEEEES---SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEEC
T ss_pred EEEEEcC---CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcC
Confidence 4455444 6799999999999888864 2342555555455432 22 12456899999999988666544
Q ss_pred C-----CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCC
Q 040062 187 D-----DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHN 261 (689)
Q Consensus 187 ~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~ 261 (689)
. +..|.+||+.+++.+..+..+........++..+++++++..++.+.........+.+++.........+.+|.
T Consensus 86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~ 165 (343)
T 2qe8_A 86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYP 165 (343)
T ss_dssp HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCT
T ss_pred CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCC
Confidence 3 57899999998887766654322112234568899998766665553311123445566654333322232221
Q ss_pred CCEE-EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC-cEEEEeCC---CCC--------c
Q 040062 262 APII-VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR-TITVWTTA---SPR--------P 328 (689)
Q Consensus 262 ~~v~-~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg-~I~iwd~~---~~~--------~ 328 (689)
.... ...+..++..+...... .....|.. ......++++++.|+.+..++ .|+.++.. .+. .
T Consensus 166 ~~~~~~~~~~~~g~~~~~~~~~---g~~~~~~~--~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 240 (343)
T 2qe8_A 166 GIAPEDIDLVIDGVPVQIGQPD---GTVIRPHL--GVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK 240 (343)
T ss_dssp TTSCCSCCCEETTEECBEECTT---SCEECCCC--CEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred cccccccceeECCEEEEeccCC---Cceeceec--ccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence 1000 01111111111000000 00000110 112233455667777777665 45555432 111 0
Q ss_pred eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhH
Q 040062 329 LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLE 408 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~La 408 (689)
+... .+......++++++|.++++...++.|.+||.+++++..... ..+.....+++|++++.+++
T Consensus 241 ~~~~--g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------------~~~~~~p~~va~~~~g~l~v 306 (343)
T 2qe8_A 241 IERY--SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------------DEKLSWTDSFNFGSDGYLYF 306 (343)
T ss_dssp CEEE--EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE------------CGGGSCEEEEEECTTSCEEE
T ss_pred eEec--ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE------------CCceecCCeeEECCCCcEEE
Confidence 1111 123356679999999988888889999999984454322111 11123578999999998777
Q ss_pred hhccccce
Q 040062 409 AASAKETT 416 (689)
Q Consensus 409 s~s~DG~v 416 (689)
+.+..+.+
T Consensus 307 ~~~~~~~~ 314 (343)
T 2qe8_A 307 DCNQLHHS 314 (343)
T ss_dssp EECCGGGS
T ss_pred EeCccccc
Confidence 76655544
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.98 E-value=1.2e-09 Score=113.11 Aligned_cols=306 Identities=12% Similarity=0.051 Sum_probs=175.4
Q ss_pred CceeeecCceE-EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE
Q 040062 6 PSWVRHEGMQI-FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 6 ~~~~~H~g~~I-~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg 84 (689)
..|..+.+..+ .+..+..++. |.+++.++.|..|| .+ ++.+..+..+...+.++...++|. |..+
T Consensus 11 ~~W~~~~~~~~~~~~~~d~~g~-l~v~t~~~~l~~~d-~~-----------g~~~~~~~~~~~~~~~~~~~~~g~-l~v~ 76 (330)
T 3hxj_A 11 IKWEFLIGNSIDSSPILAKNGT-IYLGSSNKNLYAIN-TD-----------GSVKWFFKSGEIIECRPSIGKDGT-IYFG 76 (330)
T ss_dssp -CCTTTSCEEECCCCEECTTSC-EECSSTTTTTEEEC-TT-----------SCEEESSCGGGEEEECCEETTTTE-ECCS
T ss_pred EEEEEeCCCCcccCceEccCCe-EEEEcCCCEEEEEC-CC-----------CcEEEEEecCCCcccceEEecCCc-EEEe
Confidence 34544433222 3344545664 55667788899999 65 444444444445567777877775 4444
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
+.+ |..||. ++.....+.. +........+. +..|..++.++.|..+|.. ++....+.
T Consensus 77 t~~--l~~~d~-~g~~~~~~~~-----------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~ 133 (330)
T 3hxj_A 77 SDK--VYAINP-DGTEKWRFDT-----------------KKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFK 133 (330)
T ss_dssp SCE--EEEECC-CGGGGGGSCC----------------------CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEE
T ss_pred cCc--EEEECC-CCcEEEEEEC-----------------CCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEc
Confidence 444 777775 3322211110 01111112222 4567778889999999998 87777777
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
.+...+.++..++++. |+.++.++.|..||.. ++....+.... ..+..+...+++...+.. ..+.
T Consensus 134 ~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~------~~~~~~~~d~~g~l~v~t-------~~l~ 198 (330)
T 3hxj_A 134 TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTND------AITSAASIGKDGTIYFGS-------DKVY 198 (330)
T ss_dssp CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSS------CCCSCCEECTTCCEEEES-------SSEE
T ss_pred CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCC------CceeeeEEcCCCEEEEEe-------CEEE
Confidence 6666677777877777 5557778899999998 76665554321 124456667777766554 1223
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
.++ ........+......+.++...++ ..|..++.++.|..+|.
T Consensus 199 ~~d-~~g~~~~~~~~~~~~~~~~~~~~~----------------------------------g~l~v~t~~~gl~~~~~- 242 (330)
T 3hxj_A 199 AIN-PDGTEKWNFYAGYWTVTRPAISED----------------------------------GTIYVTSLDGHLYAINP- 242 (330)
T ss_dssp EEC-TTSCEEEEECCSSCCCSCCEECTT----------------------------------SCEEEEETTTEEEEECT-
T ss_pred EEC-CCCcEEEEEccCCcceeceEECCC----------------------------------CeEEEEcCCCeEEEECC-
Confidence 333 222222222222222333333222 25666777888888874
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecCchh
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQ 404 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg 404 (689)
+++.+..+.. ....+.++.+.+++ .|++++.+|.|..+|. +++..... ......+.++.++.+|
T Consensus 243 ~g~~~~~~~~-~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~~~~-------------~~~~~~~~~~~~d~~g 306 (330)
T 3hxj_A 243 DGTEKWRFKT-GKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEKWNF-------------ETGSWIIATPVIDENG 306 (330)
T ss_dssp TSCEEEEEEC-SSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEEEEE-------------ECSSCCCSCCEECTTC
T ss_pred CCCEeEEeeC-CCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEEEEE-------------EcCCccccceEEcCCC
Confidence 5555555443 23334556666565 5777888888999985 45443221 1122346777787877
Q ss_pred hhhHhhccccce
Q 040062 405 LLLEAASAKETT 416 (689)
Q Consensus 405 ~~Las~s~DG~v 416 (689)
.+. .++.+|.+
T Consensus 307 ~l~-~gt~~G~~ 317 (330)
T 3hxj_A 307 TIY-FGTRNGKF 317 (330)
T ss_dssp CEE-EECTTSCE
T ss_pred EEE-EEcCCCeE
Confidence 644 47788888
No 228
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.96 E-value=2.2e-07 Score=98.35 Aligned_cols=272 Identities=11% Similarity=0.019 Sum_probs=156.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC---------CCcEE-EEEEcCCCCEEEEEeCCCeEEEE
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH---------FGSVN-CVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h---------~~~V~-~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
++.+|++++.++.|..||.++ ++.+..+... ...+. .+.. ++..|+.++.++.|..+
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~t-----------G~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~ 118 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADD-----------GKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYAL 118 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTT-----------CCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEE
T ss_pred ECCEEEEEcCCCeEEEEEccC-----------CceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEE
Confidence 456788888889999999986 4544444321 12222 2222 35578888899999999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCe---
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLV--- 170 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V--- 170 (689)
|..++. ..-............... +..+++++.++.|..+|..+++.+..+.......
T Consensus 119 d~~tG~-----------------~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~ 179 (376)
T 3q7m_A 119 NTSDGT-----------------VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLR 179 (376)
T ss_dssp ETTTCC-----------------EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEECCC-----C
T ss_pred ECCCCC-----------------EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeec
Confidence 999883 222222222111111222 4578888899999999999999888776432211
Q ss_pred --EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEE---EEEcC--CCCeEEEecCCCCCcccc
Q 040062 171 --KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRR---LGWSP--CGHFITTTHGFQKPRHSA 243 (689)
Q Consensus 171 --~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~---l~~sp--dg~~l~~~~~~~~~~~~~ 243 (689)
...... +..++.+..++.|..+|..+++.+.......... ...+.. +...| .+..++++.. ...+
T Consensus 180 ~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~v~~~~~----~g~l 251 (376)
T 3q7m_A 180 GESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG--STEIDRLSDVDTTPVVVNGVVFALAY----NGNL 251 (376)
T ss_dssp CCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-------------CCCCCCEEETTEEEEECT----TSCE
T ss_pred CCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCC--CcccccccccCCCcEEECCEEEEEec----CcEE
Confidence 122222 4567788889999999999998877665332110 000000 00000 1223333221 1122
Q ss_pred ceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeC
Q 040062 244 PVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTT 323 (689)
Q Consensus 244 ~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~ 323 (689)
..++..+.+...... ......+.. .+..++.++.++.|..+|.
T Consensus 252 ~~~d~~tG~~~w~~~--~~~~~~~~~-----------------------------------~~~~l~~~~~~g~l~~~d~ 294 (376)
T 3q7m_A 252 TALDLRSGQIMWKRE--LGSVNDFIV-----------------------------------DGNRIYLVDQNDRVMALTI 294 (376)
T ss_dssp EEEETTTCCEEEEEC--CCCEEEEEE-----------------------------------ETTEEEEEETTCCEEEEET
T ss_pred EEEECCCCcEEeecc--CCCCCCceE-----------------------------------ECCEEEEEcCCCeEEEEEC
Confidence 333333222221111 011111111 2357788888999999999
Q ss_pred CCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccc
Q 040062 324 ASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHR 374 (689)
Q Consensus 324 ~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~ 374 (689)
.+++.+..........+..... .+..|++++.+|.|++||..++++...
T Consensus 295 ~tG~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~ 343 (376)
T 3q7m_A 295 DGGVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQ 343 (376)
T ss_dssp TTCCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred CCCcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEE
Confidence 9999887765322223333333 256788999999999999999887643
No 229
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=120.76 Aligned_cols=147 Identities=16% Similarity=0.104 Sum_probs=80.4
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
++.++++++.||.|+.||..+ ++.+.++.. +.+.+..+..++..+++++.|+.|+.||..++.....
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~t-----------G~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~ 74 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRT-----------GSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTK 74 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTT-----------CCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEE
T ss_pred eCCEEEEEcCCCEEEEEECCC-----------CCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeee
Confidence 577899999999999999987 677766665 4555555667788888888999999999988743221
Q ss_pred cCCCCCCCcccceEEEEEecCCC-CEE-EEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCE
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTA-DVV-DLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSF 181 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~-~V~-~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~ 181 (689)
+ ..+.. .+. ...+. ++..|++++.|+.|+.||..+|+.+..+..+. ...++|++..
T Consensus 75 ~-----------------~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~ 132 (369)
T 2hz6_A 75 L-----------------PFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSL 132 (369)
T ss_dssp C-----------------SCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--------------------------
T ss_pred e-----------------eccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCE
Confidence 1 11100 000 00111 34567788889999999999999988877554 2345678889
Q ss_pred EEEEeCCCeEEEEECCCCcceeec
Q 040062 182 IASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 182 las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
+++++.|+.|+.||.++++.+..+
T Consensus 133 v~~~~~dg~v~a~d~~tG~~~W~~ 156 (369)
T 2hz6_A 133 LYLGRTEYTITMYDTKTRELRWNA 156 (369)
T ss_dssp EEEEEEEEEEECCCSSSSSCCCEE
T ss_pred EEEEecCCEEEEEECCCCCEEEeE
Confidence 999999999999999888765543
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=98.93 E-value=6.9e-08 Score=110.63 Aligned_cols=306 Identities=10% Similarity=0.048 Sum_probs=163.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-C----CcEEE-EEEcCCCCEEEEEeC------CCeEE
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-F----GSVNC-VRWAKHGRYIASGSD------DQVIL 91 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~----~~V~~-v~fspdg~~Lasgs~------Dg~I~ 91 (689)
++.+|++++.|+.|..+|..+ ++.+..+..+ . ..+.+ ... .+..++.++. ++.|+
T Consensus 127 ~~~~v~v~~~dg~l~alD~~t-----------G~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 127 WKGKVYVGAWDGRLIALDAAT-----------GKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp ETTEEEEECTTSEEEEEETTT-----------CCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEE
T ss_pred ECCEEEEEcCCCEEEEEECCC-----------CCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEE
Confidence 456888889999999999987 6666655543 1 11111 111 2334555443 68999
Q ss_pred EEEcCCCCCccccCCCCCCC------------cccce---EEEEEecCCCCEEEEEEcCCCCEEEEEeCCC---------
Q 040062 92 IHEKKPGSGTTEFGSGEPPD------------IENWK---VAMTLRGHTADVVDLNWSPDDSILASGSLDN--------- 147 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~------------~~~~~---~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg--------- 147 (689)
.||..+++....+....... ...|. ......+.......+++++++..|+.+..++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~ 273 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRS 273 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCC
Confidence 99999986443332211110 00110 0000001122234678888888888877654
Q ss_pred ----------eEEEEEcCCCeEEEEEec--CC-------CCeEEEEEccCC---CEEEEEeCCCeEEEEECCCCcceeec
Q 040062 148 ----------TIHIWNMSTGICTAVLRG--HS-------SLVKGVAWDPIG---SFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 148 ----------~I~vwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg---~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
.|..+|..+++.+..+.. |. .....+....+| ..++.++.+|.|+++|..+++++..+
T Consensus 274 ~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~ 353 (677)
T 1kb0_A 274 PKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAK 353 (677)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred ccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccc
Confidence 599999999999988764 21 122223344477 68899999999999999999988765
Q ss_pred cCcccc-----------------------------cCCcccEEEEEEcCCCCeEEEecCCCCCcccc-ceeecC------
Q 040062 206 DGHWAK-----------------------------SLGSTFFRRLGWSPCGHFITTTHGFQKPRHSA-PVLERG------ 249 (689)
Q Consensus 206 ~~~~~~-----------------------------~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~-~i~~~~------ 249 (689)
...... ..+...-..++++|++..+++........... ..+..+
T Consensus 354 ~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~ 433 (677)
T 1kb0_A 354 NFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK 433 (677)
T ss_dssp ESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS
T ss_pred cccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccc
Confidence 422100 00000012567888888777753311000000 000000
Q ss_pred -----Cce--eeeeec-C-CCCCEEEEEEcCC-ccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 250 -----EWA--ATFDFL-G-HNAPIIVVKFNHS-MFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 250 -----~~~--~~~~l~-~-h~~~v~~v~fsp~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
... ..+... . +...-...++.+. +..++ ................+.+++.++.|+.++
T Consensus 434 ~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W------------~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~ 501 (677)
T 1kb0_A 434 PQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAW------------SVEHVSPWNGGTLTTAGNVVFQGTADGRLV 501 (677)
T ss_dssp TTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEE------------EEEESSSCCCCEEEETTTEEEEECTTSEEE
T ss_pred cccccccccccccccccCCCCCccEEEEEeCCCCcEEe------------ecCCCCCCcCcceEeCCCEEEEECCCCcEE
Confidence 000 000000 0 0000111222221 10000 000011111122233557888899999999
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEE
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFA 354 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~s 354 (689)
+||.++++.+..+...+.....-+.|..+|+.+++
T Consensus 502 a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 502 AYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp EEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred EEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 99999999999887665444456677788875444
No 231
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=98.88 E-value=1.6e-07 Score=107.91 Aligned_cols=170 Identities=11% Similarity=0.078 Sum_probs=100.9
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC--CCcEEEEEEcC---CCCEEEEEe-----CCCeEEEE
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH--FGSVNCVRWAK---HGRYIASGS-----DDQVILIH 93 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~v~fsp---dg~~Lasgs-----~Dg~I~iw 93 (689)
++.+|++++.|+.|+.+|.++ ++.+..+... ......+..+| ++..++..+ .++.|..|
T Consensus 120 ~~g~v~v~~~dg~l~AlDa~T-----------G~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~ 188 (689)
T 1yiq_A 120 WKGKVYVGVLDGRLEAIDAKT-----------GQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAY 188 (689)
T ss_dssp ETTEEEEECTTSEEEEEETTT-----------CCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEE
T ss_pred ECCEEEEEccCCEEEEEECCC-----------CCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEE
Confidence 356788889999999999987 5555544321 11111111222 444444322 37899999
Q ss_pred EcCCCCCccccCCC--CCCC----------cccceE--EEEEecCCCCEEEEEEcCCCCEEEEEeCCCe-----------
Q 040062 94 EKKPGSGTTEFGSG--EPPD----------IENWKV--AMTLRGHTADVVDLNWSPDDSILASGSLDNT----------- 148 (689)
Q Consensus 94 dl~~~~~~~~~~~~--~~~~----------~~~~~~--~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~----------- 148 (689)
|..+++..-.+... .+.. ...|.- .....++......++++++..+++.+..++.
T Consensus 189 D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~ 268 (689)
T 1yiq_A 189 DAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAK 268 (689)
T ss_dssp ETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTC
T ss_pred ECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCC
Confidence 99998644333210 0000 000000 0000011122236788888888888887763
Q ss_pred --------EEEEEcCCCeEEEEEec--CC-------CCeEEEEEccCCC---EEEEEeCCCeEEEEECCCCcceee
Q 040062 149 --------IHIWNMSTGICTAVLRG--HS-------SLVKGVAWDPIGS---FIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 149 --------I~vwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
|..||..+++.+..+.. |. ..+.......+|+ .++.++.+|.++++|.++++++..
T Consensus 269 gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~ 344 (689)
T 1yiq_A 269 GDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSA 344 (689)
T ss_dssp SCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEE
T ss_pred CCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEecc
Confidence 99999999999988864 22 1222222233564 788999999999999999998743
No 232
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.87 E-value=9.9e-08 Score=104.65 Aligned_cols=233 Identities=11% Similarity=0.014 Sum_probs=147.9
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEEEEE-c-CCCCEEEEEe--------
Q 040062 77 HGRYIASGSD-DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVDLNW-S-PDDSILASGS-------- 144 (689)
Q Consensus 77 dg~~Lasgs~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~-s-pdg~~Lasgs-------- 144 (689)
||++|..+.. +..|.+.|+++. ++...+.- .......+++ + |++.++++++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~-----------------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~ 162 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVM-----------------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVN 162 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT-----------------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSC
T ss_pred CCCEEEEEcCCCCEEEEEECCCc-----------------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCC
Confidence 7888877665 567999999987 55553332 2356889998 5 8999998885
Q ss_pred ----------CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCC---------------e---------
Q 040062 145 ----------LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK---------------T--------- 190 (689)
Q Consensus 145 ----------~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg---------------~--------- 190 (689)
.++.+.++|..+.+....+.... ....++++|+|+++++.+.+. .
T Consensus 163 dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~ 241 (595)
T 1fwx_A 163 DGTNMEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI 241 (595)
T ss_dssp SSSSTTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH
T ss_pred CCcccccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce
Confidence 34589999999999988887433 456788999999999988653 2
Q ss_pred --------------EEEEECCC--Ccc-eeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCcee
Q 040062 191 --------------VIIWRTSD--WSL-AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAA 253 (689)
Q Consensus 191 --------------I~iwd~~~--~~~-~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~ 253 (689)
|.+.|.++ ++. +..+... ....++.++|||+++++++... ..+.+++......
T Consensus 242 ~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s---~~VsVid~~~~~~ 311 (595)
T 1fwx_A 242 EKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLS---PTVTVLDVTRFDA 311 (595)
T ss_dssp HHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTS---SBEEEEEGGGHHH
T ss_pred eEeccCCCeeEECcEEEEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCC---CeEEEEECccccc
Confidence 44444444 222 2222111 1246789999999999986543 3344555443311
Q ss_pred -----------eeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEe
Q 040062 254 -----------TFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWT 322 (689)
Q Consensus 254 -----------~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd 322 (689)
...-..-......++|++++ ...++.-.|+.|.+||
T Consensus 312 ~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG---------------------------------~aY~t~~ldsqV~kwd 358 (595)
T 1fwx_A 312 VFYENADPRSAVVAEPELGLGPLHTAFDGRG---------------------------------NAYTSLFLDSQVVKWN 358 (595)
T ss_dssp HHHSCCCGGGGEEECCBCCSCEEEEEECTTS---------------------------------EEEEEETTTTEEEEEE
T ss_pred ccccccCcccceEEEcCCCCCcceEEECCCC---------------------------------eEEEEEecCCcEEEEE
Confidence 11111112334556676664 5666777899999999
Q ss_pred CCC----------CCceEEecccCCCCe-----EEEEEccCCCeEEEEeC---CCcE----------EEEEeecccc
Q 040062 323 TAS----------PRPLFVAKHFFTQSV-----VDLSWSPDGYSLFACSL---DGTV----------ANFHFEVKEL 371 (689)
Q Consensus 323 ~~~----------~~~~~~~~~~h~~~V-----~~l~~spdg~~L~sgs~---DG~I----------~vwd~~~~~l 371 (689)
+.. ...+..+.. |.++- ..+.++|||++|+++.. |..+ .++|+..+++
T Consensus 359 i~~a~~~~~g~~~~~vi~kidV-~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m 434 (595)
T 1fwx_A 359 IEDAIRAYAGEKVDPIKDKLDV-HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKM 434 (595)
T ss_dssp HHHHHHHHHTCSCCCEEEEEEC-SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSC
T ss_pred hhHhhhhhcccccceeEEEeec-ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcE
Confidence 976 334444432 32211 12245799999999753 4432 7788865443
No 233
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.86 E-value=9.2e-08 Score=98.83 Aligned_cols=264 Identities=11% Similarity=0.017 Sum_probs=156.3
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.+.++.+.++|.++ .++.+ |..||.. ++.+..+..+........+. +..|..++.++.|..+|
T Consensus 61 ~~~~~~~~~~g~l~-v~t~~--l~~~d~~------------g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d 123 (330)
T 3hxj_A 61 IECRPSIGKDGTIY-FGSDK--VYAINPD------------GTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAIN 123 (330)
T ss_dssp EEECCEETTTTEEC-CSSCE--EEEECCC------------GGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEEC
T ss_pred cccceEEecCCcEE-EecCc--EEEECCC------------CcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEc
Confidence 45777777777544 44444 8888753 23332232222222223333 45677788889999999
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVA 174 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 174 (689)
.. + +.......+...+.++...+++. |..++.++.|..||.. ++.+..+......+.++.
T Consensus 124 ~~-g-----------------~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~ 183 (330)
T 3hxj_A 124 TD-G-----------------TEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS 183 (330)
T ss_dssp TT-S-----------------CEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred CC-C-----------------CEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence 87 5 23333444445566667776666 6667788999999998 888777776666777888
Q ss_pred EccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceee
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAAT 254 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~ 254 (689)
+++++.+++.. +.|..|| .+++......... ..+.++...++|...+.... ..+..++.. ....
T Consensus 184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~------~~~~~~~~~~~g~l~v~t~~-----~gl~~~~~~-g~~~ 247 (330)
T 3hxj_A 184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGY------WTVTRPAISEDGTIYVTSLD-----GHLYAINPD-GTEK 247 (330)
T ss_dssp ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSS------CCCSCCEECTTSCEEEEETT-----TEEEEECTT-SCEE
T ss_pred EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCC------cceeceEECCCCeEEEEcCC-----CeEEEECCC-CCEe
Confidence 88888755544 7799999 6666655544321 22556777888766665421 112222211 1111
Q ss_pred eeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc
Q 040062 255 FDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH 334 (689)
Q Consensus 255 ~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~ 334 (689)
..+......+..+.+. .+..|..++.++.|..+|. +++.+..+..
T Consensus 248 ~~~~~~~~~~~~~~~~----------------------------------~~g~l~v~t~~ggl~~~d~-~g~~~~~~~~ 292 (330)
T 3hxj_A 248 WRFKTGKRIESSPVIG----------------------------------NTDTIYFGSYDGHLYAINP-DGTEKWNFET 292 (330)
T ss_dssp EEEECSSCCCSCCEEC----------------------------------TTSCEEEECTTCEEEEECT-TSCEEEEEEC
T ss_pred EEeeCCCCccccceEc----------------------------------CCCeEEEecCCCCEEEECC-CCcEEEEEEc
Confidence 1111111100111111 1246777888889999995 6666665543
Q ss_pred cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 335 FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 335 ~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
....+.++..+.+|+ |+.++.+|.+++...+.
T Consensus 293 -~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 293 -GSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -SSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred -CCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 345677888878876 66788999999987654
No 234
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.84 E-value=4.5e-06 Score=83.63 Aligned_cols=258 Identities=8% Similarity=-0.041 Sum_probs=147.4
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEE-EeCCCeEEEEEcCCCCCccc
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIAS-GSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Las-gs~Dg~I~iwdl~~~~~~~~ 103 (689)
|.+|+.+.. +.|+.+++...... .......+......+.+++|++++..|.. -..++.|..++++...
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~------~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~---- 69 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMK------KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE---- 69 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBC------GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCC----
T ss_pred CcEEEEEcC-CeEEEEEecCcccc------cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCC----
Confidence 345666654 57888888751100 00001111112245789999997665554 4457899999987542
Q ss_pred cCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI 182 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l 182 (689)
....+.........+++++++..|+.+ ...+.|.++++..................++++|++..|
T Consensus 70 -------------~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~l 136 (267)
T 1npe_A 70 -------------PTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNL 136 (267)
T ss_dssp -------------CEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEE
T ss_pred -------------cEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEE
Confidence 111222223568899999976655554 456799999986543323333223567899999976666
Q ss_pred EEEeC---CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC
Q 040062 183 ASQSD---DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG 259 (689)
Q Consensus 183 as~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 259 (689)
+.+.. .+.|..++++... ...+.. ........+++++++..|+.+.... ..+..++.........+.+
T Consensus 137 yv~~~~~~~~~I~~~~~dg~~-~~~~~~-----~~~~~P~gia~d~~~~~lyv~d~~~---~~I~~~~~~g~~~~~~~~~ 207 (267)
T 1npe_A 137 YWTDWNRDNPKIETSHMDGTN-RRILAQ-----DNLGLPNGLTFDAFSSQLCWVDAGT---HRAECLNPAQPGRRKVLEG 207 (267)
T ss_dssp EEEECCSSSCEEEEEETTSCC-CEEEEC-----TTCSCEEEEEEETTTTEEEEEETTT---TEEEEEETTEEEEEEEEEC
T ss_pred EEEECCCCCcEEEEEecCCCC-cEEEEE-----CCCCCCcEEEEcCCCCEEEEEECCC---CEEEEEecCCCceEEEecC
Confidence 55553 3688888875432 222211 0122468899999988887776533 2333444332211111111
Q ss_pred CCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCC
Q 040062 260 HNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQS 339 (689)
Q Consensus 260 h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~ 339 (689)
. .....++.. .+.++++....+.|.++|..+++.+..+.......
T Consensus 208 ~-~~P~gi~~d----------------------------------~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~ 252 (267)
T 1npe_A 208 L-QYPFAVTSY----------------------------------GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTR 252 (267)
T ss_dssp C-CSEEEEEEE----------------------------------TTEEEEEETTTTEEEEEETTTTEEEEEECCSSCCC
T ss_pred C-CCceEEEEe----------------------------------CCEEEEEECCCCeEEEEeCCCCCceEEEccccccc
Confidence 1 111222221 12455555566899999999988887776432224
Q ss_pred eEEEEEccCCC
Q 040062 340 VVDLSWSPDGY 350 (689)
Q Consensus 340 V~~l~~spdg~ 350 (689)
...+++.|++.
T Consensus 253 p~gi~~~~~~~ 263 (267)
T 1npe_A 253 LYGITIALSQC 263 (267)
T ss_dssp CCCEEEECSCC
T ss_pred cceeeecCccC
Confidence 67888888764
No 235
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=98.83 E-value=2e-06 Score=90.88 Aligned_cols=259 Identities=9% Similarity=-0.023 Sum_probs=147.7
Q ss_pred CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccc
Q 040062 24 GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTE 103 (689)
Q Consensus 24 dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~ 103 (689)
++.++++++.++.|..+|.++ ++.+............... .+..++.++.++.|..+|..++.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~t-----------G~~~W~~~~~~~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~---- 164 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSD-----------GTVAWQTKVAGEALSRPVV--SDGLVLIHTSNGQLQALNEADGA---- 164 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTT-----------CCEEEEEECSSCCCSCCEE--ETTEEEEECTTSEEEEEETTTCC----
T ss_pred eCCEEEEEcCCCEEEEEECCC-----------CCEEEEEeCCCceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc----
Confidence 355777888899999999986 5555444433221111122 24578888899999999998874
Q ss_pred cCCCCCCCcccceEEEEEecCCCCE-----EEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCC----eE---
Q 040062 104 FGSGEPPDIENWKVAMTLRGHTADV-----VDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSL----VK--- 171 (689)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~~h~~~V-----~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~----V~--- 171 (689)
............ ...... +..++.+..++.|..+|..+++.+......... +.
T Consensus 165 -------------~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~ 229 (376)
T 3q7m_A 165 -------------VKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLS 229 (376)
T ss_dssp -------------EEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------
T ss_pred -------------EEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence 222222111100 111122 446777888999999999999988777532110 00
Q ss_pred EEEEcc--CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecC
Q 040062 172 GVAWDP--IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERG 249 (689)
Q Consensus 172 ~l~~sp--dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~ 249 (689)
.+...| .+..++.++.++.|..+|.++++.+....... ...+.. ++..++++... ..+..++..
T Consensus 230 ~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~--------~~~~~~--~~~~l~~~~~~----g~l~~~d~~ 295 (376)
T 3q7m_A 230 DVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS--------VNDFIV--DGNRIYLVDQN----DRVMALTID 295 (376)
T ss_dssp CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC--------EEEEEE--ETTEEEEEETT----CCEEEEETT
T ss_pred ccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC--------CCCceE--ECCEEEEEcCC----CeEEEEECC
Confidence 010111 35677788889999999999998876654221 222222 23444443321 223333433
Q ss_pred CceeeeeecCC-CCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCc
Q 040062 250 EWAATFDFLGH-NAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRP 328 (689)
Q Consensus 250 ~~~~~~~l~~h-~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~ 328 (689)
+.......... ...+... ...+..|++++.+|.|.+||..+++.
T Consensus 296 tG~~~w~~~~~~~~~~~~~-----------------------------------~~~~~~l~v~~~~g~l~~~d~~tG~~ 340 (376)
T 3q7m_A 296 GGVTLWTQSDLLHRLLTSP-----------------------------------VLYNGNLVVGDSEGYLHWINVEDGRF 340 (376)
T ss_dssp TCCEEEEECTTTTSCCCCC-----------------------------------EEETTEEEEECTTSEEEEEETTTCCE
T ss_pred CCcEEEeecccCCCcccCC-----------------------------------EEECCEEEEEeCCCeEEEEECCCCcE
Confidence 32222111100 0000000 00235788889999999999999998
Q ss_pred eEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 329 LFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 329 ~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
+................ .+..|++++.+|.|+.|+
T Consensus 341 ~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 341 VAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp EEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred EEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 87665422221122222 256788899999999986
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.81 E-value=4.1e-08 Score=103.38 Aligned_cols=91 Identities=11% Similarity=-0.123 Sum_probs=73.7
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe----------CCCeEEEEEcCCCe
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS----------LDNTIHIWNMSTGI 158 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs----------~Dg~I~vwd~~~~~ 158 (689)
.|.++|..++ +.+.++.....+ .+.++||+++|+++. .++.|.+||+.+++
T Consensus 47 ~vsvID~~t~-----------------~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~ 107 (368)
T 1mda_H 47 ENWVSCAGCG-----------------VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL 107 (368)
T ss_dssp EEEEEETTTT-----------------EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred eEEEEECCCC-----------------eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence 7889999887 677777655555 799999999888886 36899999999999
Q ss_pred EEEEEecC-------CCCeEEEEEccCCCEEEEEeC--CCeEEE--EECCC
Q 040062 159 CTAVLRGH-------SSLVKGVAWDPIGSFIASQSD--DKTVII--WRTSD 198 (689)
Q Consensus 159 ~~~~l~~h-------~~~V~~l~~spdg~~las~s~--Dg~I~i--wd~~~ 198 (689)
.+..+..+ ......++|+|||++|+++.. +..|.+ +|+.+
T Consensus 108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 99998644 123567999999999998874 457888 88876
No 237
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.75 E-value=2.3e-06 Score=85.28 Aligned_cols=197 Identities=9% Similarity=-0.038 Sum_probs=132.5
Q ss_pred eecCc-eEEEEEEcCCCCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceeeeeecCCC-CcEEEEEEcCCCCEE-EEE
Q 040062 10 RHEGM-QIFSIDVQPGALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHF-GSVNCVRWAKHGRYI-ASG 84 (689)
Q Consensus 10 ~H~g~-~I~si~~spdg~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fspdg~~L-asg 84 (689)
.|.+. ....+.|++|+.++++.+. ++.|+++|+.+ ++.+..+.-.. .....+++. ++.| ++.
T Consensus 16 p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~t-----------g~v~~~i~l~~~~fgeGi~~~--g~~lyv~t 82 (266)
T 2iwa_A 16 PHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQT-----------GKVENIHKMDDSYFGEGLTLL--NEKLYQVV 82 (266)
T ss_dssp ECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTT-----------CCEEEEEECCTTCCEEEEEEE--TTEEEEEE
T ss_pred ECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCC-----------CCEEEEEecCCCcceEEEEEe--CCEEEEEE
Confidence 45432 3679999999755554443 57999999987 66666654211 122345555 4444 444
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
-.++.+.++|..+. +.+.++...... ...+++|++.|+++..++.|.++|..+.+.+..+.
T Consensus 83 ~~~~~v~viD~~t~-----------------~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~ 143 (266)
T 2iwa_A 83 WLKNIGFIYDRRTL-----------------SNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN 143 (266)
T ss_dssp TTCSEEEEEETTTT-----------------EEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred ecCCEEEEEECCCC-----------------cEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 56789999999887 566666422111 12345578877777778999999999998888876
Q ss_pred cCC-----CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc-------ccCCcccEEEEEEcCCCCeEEE
Q 040062 165 GHS-----SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA-------KSLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 165 ~h~-----~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~-------~~~~~~~i~~l~~spdg~~l~~ 232 (689)
... ..+..+.|. ++..++....++.|.+.|..+++.+..+..... ..........++|+|+++.+++
T Consensus 144 Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfV 222 (266)
T 2iwa_A 144 VKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFV 222 (266)
T ss_dssp CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEE
T ss_pred ECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEE
Confidence 322 246788888 676555555678999999999999888865311 0111234689999999998888
Q ss_pred ecCCCCC
Q 040062 233 THGFQKP 239 (689)
Q Consensus 233 ~~~~~~~ 239 (689)
++.....
T Consensus 223 Tgk~~~~ 229 (266)
T 2iwa_A 223 TGKLWPK 229 (266)
T ss_dssp EETTCSE
T ss_pred ECCCCCe
Confidence 8764433
No 238
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.74 E-value=8.1e-10 Score=117.21 Aligned_cols=185 Identities=14% Similarity=0.111 Sum_probs=106.7
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
++..|++++.|+.|+.||..+++ ....+.. ..+.+..+..++..+++++.|+.|+.||..+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-----------------~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~t 68 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-----------------IKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKN 68 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-----------------EEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC----
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-----------------EEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCC
Confidence 57789999999999999999883 4444443 3444455556777888888999999999999
Q ss_pred CeEEEEEecCCC-CeE-EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 157 GICTAVLRGHSS-LVK-GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 157 ~~~~~~l~~h~~-~V~-~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
++.+..+..+.. .+. ...+. ++..|++++.|+.|+.||..+++.+..+..+.
T Consensus 69 G~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~------------------------- 122 (369)
T 2hz6_A 69 NEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF------------------------- 122 (369)
T ss_dssp -CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------------------------------
T ss_pred CceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC-------------------------
Confidence 887766553321 110 01111 34567778889999999999887765543210
Q ss_pred CCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC
Q 040062 235 GFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ 314 (689)
Q Consensus 235 ~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~ 314 (689)
...++|. +..+++++.
T Consensus 123 -------------------------------~~~~~p~---------------------------------~~~v~~~~~ 138 (369)
T 2hz6_A 123 -------------------------------ADSLSPS---------------------------------TSLLYLGRT 138 (369)
T ss_dssp --------------------------------------------------------------------------EEEEEE
T ss_pred -------------------------------ccccccc---------------------------------CCEEEEEec
Confidence 0011112 257788888
Q ss_pred CCcEEEEeCCCCCceEEecccCCCCeEEEEEccCC---CeEEEEeCCCcEEEEEeecccccc
Q 040062 315 DRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDG---YSLFACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 315 Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg---~~L~sgs~DG~I~vwd~~~~~l~~ 373 (689)
|+.|+.||.++++.+..+... .....+++.+. ..+++++.||.|+.||..++++..
T Consensus 139 dg~v~a~d~~tG~~~W~~~~~---~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W 197 (369)
T 2hz6_A 139 EYTITMYDTKTRELRWNATYF---DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLW 197 (369)
T ss_dssp EEEEECCCSSSSSCCCEEEEE---EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEE
T ss_pred CCEEEEEECCCCCEEEeEecc---cccCccccCCccccceEEEECCCCEEEEEECCCCcEEE
Confidence 999999999999887665421 12233344432 567888999999999998887654
No 239
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.72 E-value=2.8e-05 Score=90.86 Aligned_cols=320 Identities=10% Similarity=0.096 Sum_probs=186.6
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee-ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT-LRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
|.++...+++.+.+ |+.++-|..|+... .+.... ...+...|.++...+++.+.+. +.++-+.+|+
T Consensus 175 i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~-----------~~~~~~~~~~~~~~i~~i~~d~~g~lwig-t~~~Gl~~~~ 241 (795)
T 4a2l_A 175 IASTLYRQGDQIYI-GTSTDGLYTYSITQ-----------KTFEKVIPILGTKQIQAILQQSPTRIWVA-TEGAGLFLIN 241 (795)
T ss_dssp CEEEEEEETTEEEE-EESSSCEEEEETTT-----------CCEEECC----CCCEEEEEEEETTEEEEE-EBSSCEEEEE
T ss_pred eEEEEECCCCCEEE-EECCCCEEEEeCCC-----------CeEEEecCCCCCCeeEEEEEcCCCCEEEE-ECCCCeEEEe
Confidence 88888888886655 55544588898764 111111 1123457899988888775554 4443488888
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEec-------CCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec--
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRG-------HTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG-- 165 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-- 165 (689)
..++. ....... ....|.++...+++.+.+ |+.+ -|.+||..++........
T Consensus 242 ~~~~~-----------------~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~ 302 (795)
T 4a2l_A 242 PKTKE-----------------IKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPV 302 (795)
T ss_dssp TTTTE-----------------EEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTT
T ss_pred CCCCe-----------------EEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCC
Confidence 77641 1111111 235699999988887554 4444 689999887765443221
Q ss_pred -----CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 166 -----HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 166 -----h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
....|.++..+++|.+ ..|+.++-|..|+..+...................|.++....+|...+.+..
T Consensus 303 ~~~~l~~~~i~~i~~D~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~----- 376 (795)
T 4a2l_A 303 ENGSLSQRSVRSIFMDSQGGM-WLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTND----- 376 (795)
T ss_dssp STTSCSSSCEEEEEECTTSCE-EEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCEEEEESS-----
T ss_pred CCCCCCCCcEEEEEEeCCcCE-EEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECC-----
Confidence 2357999999988874 45666667889987654432221111112233455899999999887766532
Q ss_pred cccceeecCCceee-eeec-------CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEE
Q 040062 241 HSAPVLERGEWAAT-FDFL-------GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIG 312 (689)
Q Consensus 241 ~~~~i~~~~~~~~~-~~l~-------~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasg 312 (689)
..+..++....... +... .....|.++...+++ ++|.+|
T Consensus 377 ~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g---------------------------------~~lWig 423 (795)
T 4a2l_A 377 GGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKK---------------------------------SLVYIG 423 (795)
T ss_dssp SCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTT---------------------------------TEEEEE
T ss_pred CCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCC---------------------------------CEEEEE
Confidence 12333333221111 1000 112456666655443 547778
Q ss_pred eCCCcEEEEeCCCCCceEEecc---cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccC
Q 040062 313 SQDRTITVWTTASPRPLFVAKH---FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYG 389 (689)
Q Consensus 313 s~Dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g 389 (689)
+.++-|.+||..+++....... .....|.++...++|.+.+.. . +.+.+|+.++++........ ...+
T Consensus 424 t~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~-------~~~~ 494 (795)
T 4a2l_A 424 THAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-L-SALVRFNPEQRSFTTIEKEK-------DGTP 494 (795)
T ss_dssp ETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-S-SCEEEEETTTTEEEECCBCT-------TCCB
T ss_pred eCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-c-CceeEEeCCCCeEEEccccc-------cccc
Confidence 8877899999887654332211 224579999999888755544 4 45888887765543211000 0001
Q ss_pred CccCceeeeecCchhhhhHhhccccce
Q 040062 390 DVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 390 ~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
-....|.++.+.++|.+.+... +|-.
T Consensus 495 ~~~~~i~~i~~d~~g~lWigt~-~Gl~ 520 (795)
T 4a2l_A 495 VVSKQITTLFRDSHKRLWIGGE-EGLS 520 (795)
T ss_dssp CCCCCEEEEEECTTCCEEEEES-SCEE
T ss_pred cCCceEEEEEECCCCCEEEEeC-CceE
Confidence 1224688999999887666544 5543
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.72 E-value=3.9e-08 Score=107.82 Aligned_cols=246 Identities=11% Similarity=0.075 Sum_probs=144.4
Q ss_pred CCCEEEEEeC-CCeEEEEEcCCCeEEEEEecC-CCCeEEEEE-c-cCCCEEEEEeC------------------CCeEEE
Q 040062 136 DDSILASGSL-DNTIHIWNMSTGICTAVLRGH-SSLVKGVAW-D-PIGSFIASQSD------------------DKTVII 193 (689)
Q Consensus 136 dg~~Lasgs~-Dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~-s-pdg~~las~s~------------------Dg~I~i 193 (689)
||++|+.... ++.|.+.|+.+.++...+.-. ...+.++++ + |++++++++++ ++.+.+
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv 179 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA 179 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence 7887777665 457999999999988866533 356788998 5 99999998852 457999
Q ss_pred EECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCcc-----------ccceeecCCceeeeeecCCC-
Q 040062 194 WRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRH-----------SAPVLERGEWAATFDFLGHN- 261 (689)
Q Consensus 194 wd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~-----------~~~i~~~~~~~~~~~l~~h~- 261 (689)
+|..+.+...++..... ...+.++|+|+++++++....... .+.+.+....... .-.+..
T Consensus 180 ID~~t~~v~~qI~Vgg~-------pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~-v~~Gk~~ 251 (595)
T 1fwx_A 180 VDADKWEVAWQVLVSGN-------LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA-IAAGDYQ 251 (595)
T ss_dssp EETTTTEEEEEEEESSC-------CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH-HHHTCSE
T ss_pred EECCCCeEEEEEEeCCC-------ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEe-ccCCCee
Confidence 99999888877764321 345789999999999876543221 1122221111000 000000
Q ss_pred --CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe-CCCcEEEEeCCCCC-----------
Q 040062 262 --APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS-QDRTITVWTTASPR----------- 327 (689)
Q Consensus 262 --~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs-~Dg~I~iwd~~~~~----------- 327 (689)
+.|..+.-.. ............+........+++++++++++ .+.+|.++|+.+.+
T Consensus 252 ~i~~V~VID~~~----------~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~ 321 (595)
T 1fwx_A 252 ELNGVKVVDGRK----------EASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRS 321 (595)
T ss_dssp EETTEEEEECSG----------GGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGG
T ss_pred EECcEEEEeCcc----------cCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCccc
Confidence 1122222111 00000000001111223344577888776665 57899999998653
Q ss_pred -ceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc----------ccccccChHHHHHHHHhccC-CccCce
Q 040062 328 -PLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK----------ELGHRLSDAELDELKRSRYG-DVRGRL 395 (689)
Q Consensus 328 -~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~----------~l~~~l~~~~~~~~~~~~~g-~~~~~I 395 (689)
....+ .-......++|++||....+.-.|+.|.+||++.. +...++. ..|. +|...-
T Consensus 322 ~v~~~v--~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid---------V~yqpGh~~~~ 390 (595)
T 1fwx_A 322 AVVAEP--ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD---------VHYQPGHLKTV 390 (595)
T ss_dssp GEEECC--BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE---------CSSCEEEEEET
T ss_pred ceEEEc--CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee---------cccccccceec
Confidence 12222 22456899999999944445667999999999872 2222221 1111 222222
Q ss_pred eeeecCchhhhhHhh
Q 040062 396 ANLAETPAQLLLEAA 410 (689)
Q Consensus 396 ~~l~~Spdg~~Las~ 410 (689)
..+.++|||++|.+.
T Consensus 391 ~g~t~~~DGk~l~~~ 405 (595)
T 1fwx_A 391 MGETLDATNDWLVCL 405 (595)
T ss_dssp TTTSTTCCSSEEEEE
T ss_pred cceEeCCCCCEEEEc
Confidence 456778999998875
No 241
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.70 E-value=1.3e-05 Score=93.83 Aligned_cols=318 Identities=8% Similarity=0.020 Sum_probs=187.3
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CCc-EEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FGS-VNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~-V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
|.++...++|.+.+. +. +.|.+||... .+.......+ ... |.++...+++.+.+ ++.++-|..|
T Consensus 133 i~~i~~d~~g~lwi~-t~-~gl~~~~~~~-----------~~~~~~~~~~~~~~~i~~i~~d~~g~lwi-gt~~~Gl~~~ 198 (795)
T 4a2l_A 133 VNGIEEISPEQLLIS-TP-EGLIMFDIKE-----------SKFIDDSFSTAMHKTIASTLYRQGDQIYI-GTSTDGLYTY 198 (795)
T ss_dssp CCEEEEEETTEEEEE-ET-TEEEEEETTT-----------TEEECSSSCHHHHTCCEEEEEEETTEEEE-EESSSCEEEE
T ss_pred EEEEEECCCCCEEEE-EC-CceEEEECCC-----------CEEEeccCCCCCCcceEEEEECCCCCEEE-EECCCCEEEE
Confidence 888888888876654 44 4588998764 1211111111 123 88888888886555 5555458888
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec-------C
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG-------H 166 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-------h 166 (689)
+..++... ... ...+...|.++....++.+. .++.++-|.+||..+++....... .
T Consensus 199 ~~~~~~~~---------------~~~-~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 261 (795)
T 4a2l_A 199 SITQKTFE---------------KVI-PILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSIS 261 (795)
T ss_dssp ETTTCCEE---------------ECC-----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCS
T ss_pred eCCCCeEE---------------Eec-CCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccC
Confidence 87665210 000 01134568888887777644 455555599999887765443221 1
Q ss_pred CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc-ccccCCcccEEEEEEcCCCCeEEEecCCCCCccccce
Q 040062 167 SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH-WAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPV 245 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i 245 (689)
...|.++..+++|.+.+ |+.+ -|.+||..+.......... .........|.++....+|...+.+... .+..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~-----Gl~~ 334 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFG-----GLNY 334 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSS-----CEEE
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCC-----CeEE
Confidence 35699999998887555 4445 5899998776554332221 1122334568999999999877765321 1222
Q ss_pred eecCCcee-eeee-----cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 246 LERGEWAA-TFDF-----LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 246 ~~~~~~~~-~~~l-----~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
++...... .+.. .-....|.++...+++ .|..|+.++-|.
T Consensus 335 ~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g----------------------------------~lWiGt~~~Gl~ 380 (795)
T 4a2l_A 335 YHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDK----------------------------------NLWIGTNDGGLN 380 (795)
T ss_dssp ECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTS----------------------------------CEEEEESSSCEE
T ss_pred eCCCcccceEEcCCCCCCCCCCCeeEEEEECCCC----------------------------------CEEEEECCCCeE
Confidence 22211110 0000 0123456666665553 466688887899
Q ss_pred EEeCCCCCceEEecc-------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCcc
Q 040062 320 VWTTASPRPLFVAKH-------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVR 392 (689)
Q Consensus 320 iwd~~~~~~~~~~~~-------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~ 392 (689)
.||..+++....... .....|.+++..++|+.|.+|+.++.|..||..+++....... ...-..
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~---------~~~l~~ 451 (795)
T 4a2l_A 381 LYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR---------NSQLVN 451 (795)
T ss_dssp EECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT---------TSCCSC
T ss_pred EEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC---------CCCcCC
Confidence 999877654332211 1245799999999988677788878899999877654321110 000123
Q ss_pred CceeeeecCchhhhhHhhccccc
Q 040062 393 GRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 393 ~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
..|.++...++|.+.+... +|-
T Consensus 452 ~~v~~i~~d~~g~lwigt~-~Gl 473 (795)
T 4a2l_A 452 ENVYAILPDGEGNLWLGTL-SAL 473 (795)
T ss_dssp SCEEEEEECSSSCEEEEES-SCE
T ss_pred CeeEEEEECCCCCEEEEec-Cce
Confidence 4688999988887655443 553
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.68 E-value=1.2e-05 Score=80.60 Aligned_cols=259 Identities=11% Similarity=0.002 Sum_probs=143.9
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTG 157 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~ 157 (689)
.+|+.+.. +.|+.++++..... .......+......+..++|++++..|+.+. .++.|.++++...
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~------------~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~ 68 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMK------------KTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG 68 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBC------------GGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC
T ss_pred cEEEEEcC-CeEEEEEecCcccc------------cccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC
Confidence 45555553 47888888754210 0000111111223578999999766555554 5679999999766
Q ss_pred eEEEEEecCCCCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 158 ICTAVLRGHSSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 158 ~~~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
.....+........++++++++..|+.+ ...+.|.+++++........... ......++++|++..|+.+...
T Consensus 69 ~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~------~~~P~~i~vd~~~g~lyv~~~~ 142 (267)
T 1npe_A 69 EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG------LVNPRGIVTDPVRGNLYWTDWN 142 (267)
T ss_dssp CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS------CSSEEEEEEETTTTEEEEEECC
T ss_pred CcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECC------CCCccEEEEeeCCCEEEEEECC
Confidence 5444443333578899999976655544 45678999998653322222111 1236889999987776665432
Q ss_pred CCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCC
Q 040062 237 QKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDR 316 (689)
Q Consensus 237 ~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg 316 (689)
.. ...+..++.............-.....+++++++ +.++++-...+
T Consensus 143 ~~-~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~--------------------------------~~lyv~d~~~~ 189 (267)
T 1npe_A 143 RD-NPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFS--------------------------------SQLCWVDAGTH 189 (267)
T ss_dssp SS-SCEEEEEETTSCCCEEEECTTCSCEEEEEEETTT--------------------------------TEEEEEETTTT
T ss_pred CC-CcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCC--------------------------------CEEEEEECCCC
Confidence 10 1122222221111111111112334556666543 24455555668
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEeeccccccccChHHHHHHHHhccCCccCce
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRL 395 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I 395 (689)
.|.++|.........+.. ......++.. +..|+.+. ..+.|.++|..+++....+.. + .....
T Consensus 190 ~I~~~~~~g~~~~~~~~~--~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~-----------g-~~~~p 253 (267)
T 1npe_A 190 RAECLNPAQPGRRKVLEG--LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP-----------H-KQTRL 253 (267)
T ss_dssp EEEEEETTEEEEEEEEEC--CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC-----------S-SCCCC
T ss_pred EEEEEecCCCceEEEecC--CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc-----------c-ccccc
Confidence 899999875443333221 2345666654 45566555 468899999888776544321 1 11135
Q ss_pred eeeecCchhh
Q 040062 396 ANLAETPAQL 405 (689)
Q Consensus 396 ~~l~~Spdg~ 405 (689)
..+++.|++.
T Consensus 254 ~gi~~~~~~~ 263 (267)
T 1npe_A 254 YGITIALSQC 263 (267)
T ss_dssp CCEEEECSCC
T ss_pred ceeeecCccC
Confidence 6777777653
No 243
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.66 E-value=9.4e-06 Score=80.83 Aligned_cols=212 Identities=12% Similarity=0.045 Sum_probs=138.4
Q ss_pred ceeeeeecCCCC--cEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-CCCCEEE
Q 040062 56 QRLLATLRDHFG--SVNCVRWAKHGRYIASGSD--DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-HTADVVD 130 (689)
Q Consensus 56 ~~~~~~l~~h~~--~V~~v~fspdg~~Lasgs~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~ 130 (689)
.+.+.++. |.. ....++|++++.++++.+. ++.|+++|+.++ +.+..+.- .......
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg-----------------~v~~~i~l~~~~fgeG 70 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG-----------------KVENIHKMDDSYFGEG 70 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC-----------------CEEEEEECCTTCCEEE
T ss_pred ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC-----------------CEEEEEecCCCcceEE
Confidence 45666664 543 4689999998765555543 579999999998 44444432 1122345
Q ss_pred EEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 131 LNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 131 l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
+++. +..| ++.-.++.+.++|..+.+.+..+...... ...+++|++.|+++..++.|.++|..+.+.+..+....
T Consensus 71 i~~~--g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~ 146 (266)
T 2iwa_A 71 LTLL--NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKY 146 (266)
T ss_dssp EEEE--TTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred EEEe--CCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECC
Confidence 6665 4444 44456789999999999999988633122 23355678777777778899999998877766654221
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
.. + .-.....+.|. ++
T Consensus 147 ~~----------------~-------------------------------p~~~~nele~~-dg---------------- 162 (266)
T 2iwa_A 147 NG----------------H-------------------------------RVIRLNELEYI-NG---------------- 162 (266)
T ss_dssp TT----------------E-------------------------------ECCCEEEEEEE-TT----------------
T ss_pred CC----------------c-------------------------------ccccceeEEEE-CC----------------
Confidence 10 0 00112233333 22
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccC------------CCCeEEEEEccCCCeEEE-Ee
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFF------------TQSVVDLSWSPDGYSLFA-CS 356 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h------------~~~V~~l~~spdg~~L~s-gs 356 (689)
.+++....++.|.+.|..+++.+..+.... ....+.++|+|+++.|++ +.
T Consensus 163 -----------------~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk 225 (266)
T 2iwa_A 163 -----------------EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGK 225 (266)
T ss_dssp -----------------EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEET
T ss_pred -----------------EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECC
Confidence 344444457889999999998887775420 135689999999876555 55
Q ss_pred CCCcEEEEEeeccc
Q 040062 357 LDGTVANFHFEVKE 370 (689)
Q Consensus 357 ~DG~I~vwd~~~~~ 370 (689)
..+.|++.++....
T Consensus 226 ~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 226 LWPKLFEIKLHLVR 239 (266)
T ss_dssp TCSEEEEEEEEECC
T ss_pred CCCeEEEEEEeccc
Confidence 78899999998754
No 244
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.57 E-value=5.7e-06 Score=81.53 Aligned_cols=190 Identities=8% Similarity=0.025 Sum_probs=129.0
Q ss_pred eecCc-eEEEEEEcCCCCEEEEEeCCC--eEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEE--EEEEcCCCCEEEEE
Q 040062 10 RHEGM-QIFSIDVQPGALRFATGGGDH--KVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVN--CVRWAKHGRYIASG 84 (689)
Q Consensus 10 ~H~g~-~I~si~~spdg~~Latgs~Dg--~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~--~v~fspdg~~Lasg 84 (689)
-|... -...+.|+ ++.++.+.+.+| .|+++|+++ ++.+..+.-.. ... .+++ +++.|...
T Consensus 38 phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~T-----------gkv~~~~~l~~-~~FgeGit~--~g~~ly~l 102 (262)
T 3nol_A 38 PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIES-----------GKTLQQIELGK-RYFGEGISD--WKDKIVGL 102 (262)
T ss_dssp ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTT-----------CCEEEEEECCT-TCCEEEEEE--ETTEEEEE
T ss_pred cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCC-----------CcEEEEEecCC-ccceeEEEE--eCCEEEEE
Confidence 45432 35788898 676666666665 899999997 66666665322 222 2444 34444444
Q ss_pred -eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE
Q 040062 85 -SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL 163 (689)
Q Consensus 85 -s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l 163 (689)
-.++.+.+||.++. +.+.++..... =..++ +|+..|+....++.|.++|..+.+.+..+
T Consensus 103 tw~~~~v~v~D~~t~-----------------~~~~ti~~~~e-G~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I 162 (262)
T 3nol_A 103 TWKNGLGFVWNIRNL-----------------RQVRSFNYDGE-GWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTI 162 (262)
T ss_dssp ESSSSEEEEEETTTC-----------------CEEEEEECSSC-CCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred EeeCCEEEEEECccC-----------------cEEEEEECCCC-ceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence 45889999999887 45555553221 13333 46777777766889999999999998887
Q ss_pred ecCC-----CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc------cCCcccEEEEEEcCCCCeEEE
Q 040062 164 RGHS-----SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK------SLGSTFFRRLGWSPCGHFITT 232 (689)
Q Consensus 164 ~~h~-----~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~------~~~~~~i~~l~~spdg~~l~~ 232 (689)
.... ..+..+.|. +|+.++..-.+..|.+.|..+++.+..+...... .......+.++|+|+++.|++
T Consensus 163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 163 TVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp ECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEE
T ss_pred EeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEE
Confidence 6422 345567876 6766665556889999999999998887654211 112234789999999988888
Q ss_pred ecC
Q 040062 233 THG 235 (689)
Q Consensus 233 ~~~ 235 (689)
++.
T Consensus 242 TGK 244 (262)
T 3nol_A 242 TGK 244 (262)
T ss_dssp EET
T ss_pred ECC
Confidence 765
No 245
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.56 E-value=4.5e-06 Score=88.52 Aligned_cols=191 Identities=14% Similarity=0.080 Sum_probs=126.6
Q ss_pred EEEEEEcCCCCEEEEEeCC------CeEEEEeCCcCCCCCCCCcccceeeeeecCCC---CcEEEEEEcCCCCEEEEEe-
Q 040062 16 IFSIDVQPGALRFATGGGD------HKVRIWNMKSVGKNFENDESTQRLLATLRDHF---GSVNCVRWAKHGRYIASGS- 85 (689)
Q Consensus 16 I~si~~spdg~~Latgs~D------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~---~~V~~v~fspdg~~Lasgs- 85 (689)
-..+..+|+| +++++..+ |.|.++|.++ .+.+.++.... ..-..+.|+|+++.+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T-----------~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~w 207 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYS-----------FEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEW 207 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTT-----------CCEEEECCSBCTTCCCCCCEEEETTTTEEEECBC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCC-----------CeEEEEEccCCCCccccceEEECCCCCEEEEccC
Confidence 4556788999 77766555 7899999987 56666665221 2234588899999888874
Q ss_pred ------------------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC--CCCEEEEEE--cCCCCEEEEE
Q 040062 86 ------------------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH--TADVVDLNW--SPDDSILASG 143 (689)
Q Consensus 86 ------------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h--~~~V~~l~~--spdg~~Lasg 143 (689)
.+..|.+||+.++ +...++... ......+.| +|++++++++
T Consensus 208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------------k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~ 270 (462)
T 2ece_A 208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------------KRIHSLTLGEENRMALELRPLHDPTKLMGFIN 270 (462)
T ss_dssp CCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------------EEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred cCccccccccchhhhhhccCCEEEEEECCCC-----------------cEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence 3689999999876 455555532 123455656 9999988777
Q ss_pred e------CCCeEEEEEcCCCeE--EEEE--ecC----------------CCCeEEEEEccCCCEEEEEeC-CCeEEEEEC
Q 040062 144 S------LDNTIHIWNMSTGIC--TAVL--RGH----------------SSLVKGVAWDPIGSFIASQSD-DKTVIIWRT 196 (689)
Q Consensus 144 s------~Dg~I~vwd~~~~~~--~~~l--~~h----------------~~~V~~l~~spdg~~las~s~-Dg~I~iwd~ 196 (689)
+ .+++|.+|....++. ...+ ... ......|.+++||++|.++.. .+.|.+||+
T Consensus 271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV 350 (462)
T 2ece_A 271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI 350 (462)
T ss_dssp EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence 6 566888877655432 1111 110 245678999999999988774 679999998
Q ss_pred CCC---cceeeccCccc--------ccCCcccEEEEEEcCCCCeEEEecC
Q 040062 197 SDW---SLAHRTDGHWA--------KSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 197 ~~~---~~~~~~~~~~~--------~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+. +++..+..... .......-+.+.++|||++|++++.
T Consensus 351 ~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs 400 (462)
T 2ece_A 351 SNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS 400 (462)
T ss_dssp SSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred cCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence 632 33333322100 0000113577999999999999864
No 246
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.52 E-value=8.8e-05 Score=75.84 Aligned_cols=246 Identities=10% Similarity=0.059 Sum_probs=136.4
Q ss_pred ceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC
Q 040062 56 QRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP 135 (689)
Q Consensus 56 ~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp 135 (689)
.+.+..+... .....++|+++|+++++-..++.|..||.+.. ....+. .......+++.+
T Consensus 22 ~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~------------------~~~~~~-~~~~p~gia~~~ 81 (306)
T 2p4o_A 22 AKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN------------------QQIHAT-VEGKVSGLAFTS 81 (306)
T ss_dssp EEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC------------------EEEEEE-CSSEEEEEEECT
T ss_pred ceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc------------------eEEEEe-CCCCceeEEEcC
Confidence 5556666433 56789999999997777777899999987643 111222 234688999999
Q ss_pred CCCEEEEEeCCC--eEEEEEcCCCeEEEEEec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcc-eeeccCcc--
Q 040062 136 DDSILASGSLDN--TIHIWNMSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSL-AHRTDGHW-- 209 (689)
Q Consensus 136 dg~~Lasgs~Dg--~I~vwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~-~~~~~~~~-- 209 (689)
+++++++..... .|..+|..+++....... .......++..+++..+++-..++.|.++|..++.. +.......
T Consensus 82 dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~ 161 (306)
T 2p4o_A 82 NGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLAR 161 (306)
T ss_dssp TSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSC
T ss_pred CCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCcccc
Confidence 999665554322 477788777775443321 223345666666555555554688999999865421 11000000
Q ss_pred -cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC-ceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 210 -AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE-WAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 210 -~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~-~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
...........+ ++++.+|+.+..... .+..++... ... +. ..+..-...|++
T Consensus 162 ~~~~~~~~~pngi--s~dg~~lyv~d~~~~---~I~~~~~~~~g~~-----~~-~~~~~~~~~P~g-------------- 216 (306)
T 2p4o_A 162 SNSESVFPAANGL--KRFGNFLYVSNTEKM---LLLRIPVDSTDKP-----GE-PEIFVEQTNIDD-------------- 216 (306)
T ss_dssp SSTTCCSCSEEEE--EEETTEEEEEETTTT---EEEEEEBCTTSCB-----CC-CEEEEESCCCSS--------------
T ss_pred ccccCCCCcCCCc--CcCCCEEEEEeCCCC---EEEEEEeCCCCCC-----Cc-cEEEeccCCCCC--------------
Confidence 000111223445 788888877754322 223333211 000 00 000000001222
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEec-ccCCCCeEEEEEc---cCCCeEEEEeCCC
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAK-HFFTQSVVDLSWS---PDGYSLFACSLDG 359 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s---pdg~~L~sgs~DG 359 (689)
....++++++++....+.|.+||.. ++...... .......++++|. +|+..|++++..+
T Consensus 217 ------------i~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 217 ------------FAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp ------------EEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ------------eEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccccCCceEEEEecccCCCCEEEEECCCC
Confidence 1123355777776677899999975 54432211 1123568999999 8988888776543
No 247
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.49 E-value=3.5e-05 Score=79.41 Aligned_cols=237 Identities=11% Similarity=0.006 Sum_probs=135.9
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-----------------cCCCCEEE
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-----------------GHTADVVD 130 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-----------------~h~~~V~~ 130 (689)
...+++|+++|++|.++..++.|..|+...+.. ....... .....+..
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~---------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~g 84 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF---------------VDFAYASPYWNKAFCENSTDAEKRPLCGRTYD 84 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCE---------------EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCce---------------EEEecccccccccccccccchhccccCCCCce
Confidence 346788999999788888889999998765421 1110000 01135789
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe---c-CCCCeEEEEEcc-CCCEEEEEeC-----------------C
Q 040062 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR---G-HSSLVKGVAWDP-IGSFIASQSD-----------------D 188 (689)
Q Consensus 131 l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~---~-h~~~V~~l~~sp-dg~~las~s~-----------------D 188 (689)
|++.+++..|+.+...+.|..+|..+++...... + .......+++++ +|+++++-.. +
T Consensus 85 i~~~~~~g~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 85 ISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp EEEETTTTEEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred EEEcCCCCcEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCC
Confidence 9999733455666556668999977553222111 1 123578899999 9987776533 3
Q ss_pred CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCC-----ceeeeeecCCCCC
Q 040062 189 KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGE-----WAATFDFLGHNAP 263 (689)
Q Consensus 189 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~-----~~~~~~l~~h~~~ 263 (689)
+.|..||..+++....... ......++|+++|+.|+++.... ..+..++... ......+ .+
T Consensus 165 g~v~~~d~~~~~~~~~~~~-------~~~p~gia~~~dg~~lyv~d~~~---~~I~~~~~~~~~~~~~~~~~~~---~g- 230 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLKE-------LHVPGGAEVSADSSFVLVAEFLS---HQIVKYWLEGPKKGTAEVLVKI---PN- 230 (322)
T ss_dssp EEEEEEETTTTEEEEEEEE-------ESCCCEEEECTTSSEEEEEEGGG---TEEEEEESSSTTTTCEEEEEEC---SS-
T ss_pred ceEEEEeCCCCEEEEeccC-------CccCcceEECCCCCEEEEEeCCC---CeEEEEECCCCcCCccceEEeC---CC-
Confidence 6788888876654322211 11245789999999777664321 2233333221 1110111 11
Q ss_pred EEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC----------CCcEEEEeCCCCCceEEec
Q 040062 264 IIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ----------DRTITVWTTASPRPLFVAK 333 (689)
Q Consensus 264 v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~----------Dg~I~iwd~~~~~~~~~~~ 333 (689)
...+++.+++ +++++... .+.|..+|.. ++.+..+.
T Consensus 231 P~gi~~d~~G---------------------------------~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~ 276 (322)
T 2fp8_A 231 PGNIKRNADG---------------------------------HFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIP 276 (322)
T ss_dssp EEEEEECTTS---------------------------------CEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEE
T ss_pred CCCeEECCCC---------------------------------CEEEEecCcccccccCCCccEEEEECCC-CCEEEEEE
Confidence 3444554443 55555433 4567888764 56555554
Q ss_pred ccC---CCCeEEEEEccCCCeEEEEeCCCcEEEEEeec
Q 040062 334 HFF---TQSVVDLSWSPDGYSLFACSLDGTVANFHFEV 368 (689)
Q Consensus 334 ~~h---~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~ 368 (689)
... ...++.+++ .+++++++...++.|.++++..
T Consensus 277 ~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 277 LPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp CCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred CCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 322 234667776 4666555555688899998764
No 248
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.49 E-value=2e-05 Score=90.08 Aligned_cols=165 Identities=12% Similarity=0.123 Sum_probs=100.8
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCC-cEEEEEEcC---CCCEEEEEeC------CCeEEEEE
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFG-SVNCVRWAK---HGRYIASGSD------DQVILIHE 94 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~fsp---dg~~Lasgs~------Dg~I~iwd 94 (689)
+.+|++++.|+.|..+|.++ ++.+..+..... ....+..+| ++ .++.+.. +|.|..||
T Consensus 117 ~~~v~v~~~dg~l~alD~~t-----------G~~~W~~~~~~~~~~~~~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D 184 (668)
T 1kv9_A 117 GDKVYVGTLDGRLIALDAKT-----------GKAIWSQQTTDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYD 184 (668)
T ss_dssp BTEEEEECTTSEEEEEETTT-----------CCEEEEEECSCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEE
T ss_pred CCEEEEEcCCCEEEEEECCC-----------CCEeeeeccCCCCCcceecCCCEEECC-EEEEeCCCCCcCCCCEEEEEE
Confidence 45788888899999999987 555555443110 000011111 34 4444432 58999999
Q ss_pred cCCCCCccccCCC--CCCCc----------------ccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC---------
Q 040062 95 KKPGSGTTEFGSG--EPPDI----------------ENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN--------- 147 (689)
Q Consensus 95 l~~~~~~~~~~~~--~~~~~----------------~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg--------- 147 (689)
..+++..-.+... .+... ..|.. .++......+++.++...++.+..++
T Consensus 185 ~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~----~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~ 260 (668)
T 1kv9_A 185 ADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKL----GGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRS 260 (668)
T ss_dssp TTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHH----CEECCCCSCEEEETTTTEEEEECCCEESSCHHHHS
T ss_pred CCCCcEEEEecccCCCCCccccccccccccccCCccceeee----CCCCccccceEEcCCCCEEEEeCCCCCccccCCCC
Confidence 9998654333211 11000 01110 01122233578888888888887665
Q ss_pred ----------eEEEEEcCCCeEEEEEec--CC-------CCeEEEEEccCCC---EEEEEeCCCeEEEEECCCCcceeec
Q 040062 148 ----------TIHIWNMSTGICTAVLRG--HS-------SLVKGVAWDPIGS---FIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 148 ----------~I~vwd~~~~~~~~~l~~--h~-------~~V~~l~~spdg~---~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
.|..+|..+++.+..+.. |. .+.....+..+|+ .++.++.+|.++++|..+++++...
T Consensus 261 ~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~ 340 (668)
T 1kv9_A 261 PGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAE 340 (668)
T ss_dssp TTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEE
T ss_pred CCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccc
Confidence 499999999999988864 22 2222233334665 6888999999999999999987443
No 249
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.46 E-value=2.6e-05 Score=76.77 Aligned_cols=186 Identities=10% Similarity=-0.010 Sum_probs=127.2
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEc
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEK 95 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl 95 (689)
...+.|+ ++.++.+.+.+|.|+++|+++ ++.+..+-...-.--.+++.. +++.+..-.++.+.+||.
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~T-----------gkv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLES-----------AQPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSC-----------SSCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCC-----------CcEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 4678887 456667777788999999987 555555411111123355543 344445556899999999
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCC-----CCe
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHS-----SLV 170 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~-----~~V 170 (689)
++. +.+.++.... .-..|+ +|+..|+.+..++.|.++|..+.+.+..+.... ..+
T Consensus 124 ~Tl-----------------~~~~ti~~~~-eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~l 183 (268)
T 3nok_A 124 MPP-----------------QRERTTRYSG-EGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELI 183 (268)
T ss_dssp TTT-----------------EEEEEEECSS-CCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CcC-----------------cEEEEEeCCC-ceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence 887 5666665422 223444 467888877779999999999999988876422 245
Q ss_pred EEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCccc-------ccCCcccEEEEEEcCCCCeEEEecC
Q 040062 171 KGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWA-------KSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 171 ~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~-------~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
..+.|. +|+.++....+..|.+.|..+++.+..+..... ........+.++|+|+++.|++++.
T Consensus 184 NeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 184 NELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred cccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 677877 776665555678999999999999888765421 1112235789999999887777654
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.45 E-value=1.5e-05 Score=90.97 Aligned_cols=60 Identities=10% Similarity=0.164 Sum_probs=46.7
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
.+|.|..||+.+++.+..... ........+...+.+|++++.||.+++||.+++++...+
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~ 495 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQF 495 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred ccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEe
Confidence 458899999999998887654 233444455567889999999999999999998876543
No 251
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.43 E-value=4.8e-05 Score=74.91 Aligned_cols=193 Identities=9% Similarity=0.116 Sum_probs=125.5
Q ss_pred ceEEEEEecCCCC--EEEEEEcCCCCEEEEEeCCC--eEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe-CCC
Q 040062 115 WKVAMTLRGHTAD--VVDLNWSPDDSILASGSLDN--TIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS-DDK 189 (689)
Q Consensus 115 ~~~~~~l~~h~~~--V~~l~~spdg~~Lasgs~Dg--~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s-~Dg 189 (689)
++.+.++ .|... ...|.|+ ++.++.+.+.+| .|+++|+.+++.+..+.... ........++++.|.... .++
T Consensus 31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEETTEEEEEESSSS
T ss_pred eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEeCCEEEEEEeeCC
Confidence 3566666 46544 4889998 677777777766 99999999999998887433 333333333455555444 588
Q ss_pred eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC--CC---CCE
Q 040062 190 TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG--HN---API 264 (689)
Q Consensus 190 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--h~---~~v 264 (689)
.+.+||..+.+.+.++..... ...+++++..|+.+.+ ...+.+++..+......+.- .. ..+
T Consensus 108 ~v~v~D~~t~~~~~ti~~~~e---------G~glt~dg~~L~~SdG----s~~i~~iDp~T~~v~~~I~V~~~g~~~~~l 174 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYDGE---------GWGLTHNDQYLIMSDG----TPVLRFLDPESLTPVRTITVTAHGEELPEL 174 (262)
T ss_dssp EEEEEETTTCCEEEEEECSSC---------CCCEEECSSCEEECCS----SSEEEEECTTTCSEEEEEECEETTEECCCE
T ss_pred EEEEEECccCcEEEEEECCCC---------ceEEecCCCEEEEECC----CCeEEEEcCCCCeEEEEEEeccCCcccccc
Confidence 999999999999988875421 1234467888887754 23455666665544332211 11 112
Q ss_pred EEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc---------
Q 040062 265 IVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF--------- 335 (689)
Q Consensus 265 ~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~--------- 335 (689)
..+.|. ++.+++..-.++.|.+.|.++++.+..+...
T Consensus 175 NELe~~----------------------------------~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~ 220 (262)
T 3nol_A 175 NELEWV----------------------------------DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPL 220 (262)
T ss_dssp EEEEEE----------------------------------TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSC
T ss_pred ceeEEE----------------------------------CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccc
Confidence 223332 2355555556889999999999988776542
Q ss_pred --CCCCeEEEEEccCCCeEEEEeC
Q 040062 336 --FTQSVVDLSWSPDGYSLFACSL 357 (689)
Q Consensus 336 --h~~~V~~l~~spdg~~L~sgs~ 357 (689)
.....+.++|+|+++.|++.+.
T Consensus 221 ~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 221 PSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp CSSCCCEEEEEEETTTTEEEEEET
T ss_pred cCcCCceEEEEEcCCCCEEEEECC
Confidence 0135689999999888877763
No 252
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.43 E-value=0.0004 Score=80.87 Aligned_cols=324 Identities=10% Similarity=0.038 Sum_probs=181.8
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--------CCCCcEEEEEEcCCCCEEEEEeC
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--------DHFGSVNCVRWAKHGRYIASGSD 86 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--------~h~~~V~~v~fspdg~~Lasgs~ 86 (689)
.|.++....+|.+.+ |+.++-|..||... .+. ..+. -....|.++...++|.+.+. +.
T Consensus 164 ~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~-----------~~~-~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwig-t~ 229 (781)
T 3v9f_A 164 QTWTATEAEDGKLYI-GHVEGGLSILSLND-----------KSV-KHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIG-TS 229 (781)
T ss_dssp CEEEEEEEETTEEEE-EETTTEEEEEETTT-----------TEE-EEECC--------CCSSEEEEEECTTCCEEEE-ET
T ss_pred ceEEEEECCCCCEEE-EecCCCeEEEcCCC-----------Cce-EeeecCCCCcccCCCCceeEEEEcCCCCEEEE-eC
Confidence 578888877776555 55555688888764 111 1111 11356999999888876654 44
Q ss_pred CCeEEEEEcCCCCCccccCCCCCCCcccceEEE--EEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 87 DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM--TLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 87 Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
+ -+.+||..++... .+ .... ........|.++....++. |..|+..+-|.++|..+........
T Consensus 230 ~-Gl~~~d~~~~~~~-~~-----------~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~ 295 (781)
T 3v9f_A 230 K-GLALFNANTETFT-NF-----------HNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ 295 (781)
T ss_dssp T-EEEEEETTTTEEE-C----------------------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------
T ss_pred C-cHheECCCCCcEE-EE-----------EcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec
Confidence 4 5888987665210 00 0000 0011245699999887775 5556665678999987765432211
Q ss_pred --------------cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc---ccccCCcccEEEEEEcCCC
Q 040062 165 --------------GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH---WAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 165 --------------~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~i~~l~~spdg 227 (689)
.....|.++..+.+|. |..|+.++-|..|+..+.......... .........|.++....+|
T Consensus 296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g 374 (781)
T 3v9f_A 296 IRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQG 374 (781)
T ss_dssp --CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTS
T ss_pred cccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCC
Confidence 1345799999998886 445665667889988755433221110 0112234458899998888
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeee---cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCC
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDF---LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQ 304 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l---~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 304 (689)
...+.+.. ..+..++........-. ......|.++...+++
T Consensus 375 ~lWigt~~-----~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g------------------------------- 418 (781)
T 3v9f_A 375 KLWIGTDG-----GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG------------------------------- 418 (781)
T ss_dssp CEEEEEBS-----SCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-------------------------------
T ss_pred CEEEEeCC-----CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-------------------------------
Confidence 87766532 12233333221111000 1123456666555443
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEEec-ccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHH
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFVAK-HFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDEL 383 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~ 383 (689)
.|.+|+.++-|..||..+++...... ......|.++...++|.+.+ |+. +.|..|+..+++.......
T Consensus 419 ---~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~------ 487 (781)
T 3v9f_A 419 ---NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYDT------ 487 (781)
T ss_dssp ---CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEECT------
T ss_pred ---CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEecccC------
Confidence 45557777778899887664322211 12346799999988887554 554 5688888876654321110
Q ss_pred HHhccCCccCceeeeecCchhhhhHhhccccce
Q 040062 384 KRSRYGDVRGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 384 ~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
.........|.++...++|.+.+....+|..
T Consensus 488 --~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~ 518 (781)
T 3v9f_A 488 --SNSQLLENFVRSIAQDSEGRFWIGTFGGGVG 518 (781)
T ss_dssp --TTSSCSCSCEEEEEECTTCCEEEEESSSCEE
T ss_pred --cccccccceeEEEEEcCCCCEEEEEcCCCEE
Confidence 0000112468899999988766654445543
No 253
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.39 E-value=3.6e-05 Score=86.15 Aligned_cols=60 Identities=8% Similarity=0.033 Sum_probs=44.7
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
.++.|..||..+++.+..+... ..+....+...+..+++++.||.|++||..++++...+
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CCCeEEEEECCCCCEEEEecCC--CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 4588999999999988876542 22333333445677888999999999999999887543
No 254
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.38 E-value=9.1e-05 Score=72.27 Aligned_cols=192 Identities=11% Similarity=0.007 Sum_probs=129.0
Q ss_pred eecC-ceEEEEEEcCCCCEEEEEeCC--CeEEEEeCCcCCCCCCCCcccceeeeeecCCCC-cEEEEEEcCCCCEEEEEe
Q 040062 10 RHEG-MQIFSIDVQPGALRFATGGGD--HKVRIWNMKSVGKNFENDESTQRLLATLRDHFG-SVNCVRWAKHGRYIASGS 85 (689)
Q Consensus 10 ~H~g-~~I~si~~spdg~~Latgs~D--g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~fspdg~~Lasgs 85 (689)
-|.. .-...+.|+. +.++.+.+.+ ..|+.+|+++ ++.+..+.-... .--.+++. ++++....-
T Consensus 16 phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~t-----------gkv~~~~~l~~~~fgeGi~~~-~~~ly~ltw 82 (243)
T 3mbr_X 16 PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLET-----------GRILQRAEVPPPYFGAGIVAW-RDRLIQLTW 82 (243)
T ss_dssp ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTT-----------CCEEEEEECCTTCCEEEEEEE-TTEEEEEES
T ss_pred CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCC-----------CCEEEEEeCCCCcceeEEEEe-CCEEEEEEe
Confidence 4553 3467899986 5555555554 4899999997 666666643221 11233443 233444455
Q ss_pred CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 86 DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 86 ~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.++.+.+||.++. +.+.++..... =..|+ +|+..|+.+..++.|.++|..+.+.+..+..
T Consensus 83 ~~~~v~v~D~~tl-----------------~~~~ti~~~~~-Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V 142 (243)
T 3mbr_X 83 RNHEGFVYDLATL-----------------TPRARFRYPGE-GWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV 142 (243)
T ss_dssp SSSEEEEEETTTT-----------------EEEEEEECSSC-CCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred eCCEEEEEECCcC-----------------cEEEEEeCCCC-ceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence 6899999999887 56666654332 24444 4677777777789999999999999888764
Q ss_pred CC-----CCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccc-------cCCcccEEEEEEcCCCCeEEEe
Q 040062 166 HS-----SLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAK-------SLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 166 h~-----~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.. ..+..+.|. +|+.++..-.+..|.+.|..+++.+..+...... .......+.++|+|+++.|+++
T Consensus 143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT 221 (243)
T 3mbr_X 143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT 221 (243)
T ss_dssp EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence 32 355667766 6666655556779999999999998887644211 1123357899999998888877
Q ss_pred cC
Q 040062 234 HG 235 (689)
Q Consensus 234 ~~ 235 (689)
+.
T Consensus 222 GK 223 (243)
T 3mbr_X 222 GK 223 (243)
T ss_dssp ET
T ss_pred CC
Confidence 64
No 255
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.37 E-value=8.9e-06 Score=92.89 Aligned_cols=116 Identities=10% Similarity=0.022 Sum_probs=76.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEe-cCCCCEEEEEEcCCC
Q 040062 71 CVRWAK-HGRYIASGSDDQ-----------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR-GHTADVVDLNWSPDD 137 (689)
Q Consensus 71 ~v~fsp-dg~~Lasgs~Dg-----------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~spdg 137 (689)
++++.+ ++++++.|+.+. .+.+||..++ .|..+..+. .+......+++..++
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---------------~w~~~~~~~~~~~~~~~~~~~~~~g 254 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---------------IVSDRTVTVTKHDMFCPGISMDGNG 254 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---------------CBCCCEEEECSCCCSSCEEEECTTS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC---------------cEEeCcccCCCCCCccccccCCCCC
Confidence 556677 888888887643 5788888765 234433332 233445567888899
Q ss_pred CEEEEEeC-CCeEEEEEcCCCeEEEEEecCCC-CeEEEEEccCCCEEEEEe-CC-----CeEEEEECCCCcc
Q 040062 138 SILASGSL-DNTIHIWNMSTGICTAVLRGHSS-LVKGVAWDPIGSFIASQS-DD-----KTVIIWRTSDWSL 201 (689)
Q Consensus 138 ~~Lasgs~-Dg~I~vwd~~~~~~~~~l~~h~~-~V~~l~~spdg~~las~s-~D-----g~I~iwd~~~~~~ 201 (689)
++++.|+. +..+.+||..+.+....-.-+.. .-.++++.+++++++.|+ .+ ..+.+||..+.+-
T Consensus 255 ~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W 326 (656)
T 1k3i_A 255 QIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW 326 (656)
T ss_dssp CEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred CEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcc
Confidence 99999884 45899999987754433221211 113456667899999988 34 4699999976543
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.36 E-value=0.00038 Score=81.05 Aligned_cols=326 Identities=11% Similarity=-0.012 Sum_probs=182.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee----ecCCCCcEEEEEEcCCCCEEEEEeCCCe
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT----LRDHFGSVNCVRWAKHGRYIASGSDDQV 89 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~----l~~h~~~V~~v~fspdg~~Lasgs~Dg~ 89 (689)
..|.+|....+|.+.+ |+..+-|.++|........... .....+.. ..-....|.++....+|. |..|+.++-
T Consensus 258 ~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~-~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G 334 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQ-IRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG 334 (781)
T ss_dssp CCEEEEEECTTSEEEE-EESSSCEEEEETTCC----------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred ceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeec-cccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence 4699999998887554 5554568888876511000000 00000000 011345799999998886 555666667
Q ss_pred EEEEEcCCCCCccccCCCCCCCcccceEEEEE-------ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE
Q 040062 90 ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL-------RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV 162 (689)
Q Consensus 90 I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l-------~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~ 162 (689)
|..|+...... ...... ......|.++....++. |..|+.++-|.+||..++.....
T Consensus 335 l~~~~~~~~~~---------------~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~ 398 (781)
T 3v9f_A 335 INFISNAPPTF---------------HTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYN 398 (781)
T ss_dssp EEEECSSCCSC---------------EEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC
T ss_pred EEEeCCCCCcc---------------eeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEc
Confidence 88888765421 111000 01235699999887776 55666667799999865433221
Q ss_pred E---ecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 163 L---RGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 163 l---~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
. ......|.++..++++.+.+ |+.++-|..||..+++....... ......+.++...++|...+.+.
T Consensus 399 ~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~----~~~~~~v~~i~~d~~g~lwigt~----- 468 (781)
T 3v9f_A 399 KENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQIIELE----KNELLDVRVFYEDKNKKIWIGTH----- 468 (781)
T ss_dssp -----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEEECCST----TTCCCCEEEEEECTTSEEEEEET-----
T ss_pred cCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEEEeccC----CCCCCeEEEEEECCCCCEEEEEC-----
Confidence 1 12346789999888777554 66666789998876654332211 12234588888888887666543
Q ss_pred ccccceeecCCce--eeeeec---CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeC
Q 040062 240 RHSAPVLERGEWA--ATFDFL---GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQ 314 (689)
Q Consensus 240 ~~~~~i~~~~~~~--~~~~l~---~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~ 314 (689)
..+..++..... ...... .....|.++...+++ .|..|+.
T Consensus 469 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g----------------------------------~lWigt~ 513 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG----------------------------------RFWIGTF 513 (781)
T ss_dssp -TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC----------------------------------CEEEEES
T ss_pred -CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC----------------------------------CEEEEEc
Confidence 123334332211 111000 012456666655543 3555666
Q ss_pred CCcEEEEeCCCCCceEEecc---cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCc
Q 040062 315 DRTITVWTTASPRPLFVAKH---FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDV 391 (689)
Q Consensus 315 Dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~ 391 (689)
++-|..||..+++... +.. .....|.++..+++|.+.++ +.+|.|..||..+++... +. ...|-.
T Consensus 514 ~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~Glv~~~d~~~~~~~~-~~---------~~~gl~ 581 (781)
T 3v9f_A 514 GGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGEGLVCFPSARNFDYQV-FQ---------RKEGLP 581 (781)
T ss_dssp SSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETTEEEEESCTTTCCCEE-EC---------GGGTCS
T ss_pred CCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECCCceEEECCCCCcEEE-cc---------ccCCCC
Confidence 4457788876654322 221 12356899999999886554 446655888876554321 11 111112
Q ss_pred cCceeeeecCchhhhhHhhccccce
Q 040062 392 RGRLANLAETPAQLLLEAASAKETT 416 (689)
Q Consensus 392 ~~~I~~l~~Spdg~~Las~s~DG~v 416 (689)
...|.++...++|.+.++ +.+|..
T Consensus 582 ~~~i~~i~~d~~g~lW~~-t~~Gl~ 605 (781)
T 3v9f_A 582 NTHIRAISEDKNGNIWAS-TNTGIS 605 (781)
T ss_dssp CCCCCEEEECSSSCEEEE-CSSCEE
T ss_pred CceEEEEEECCCCCEEEE-cCCceE
Confidence 235788888888865554 355543
No 257
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.35 E-value=3.5e-05 Score=86.40 Aligned_cols=60 Identities=13% Similarity=0.086 Sum_probs=43.9
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
.+|.|..||+.+++.+...... .+...-.+...+.+++.++.||.|+.||.++++++...
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~ 510 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKF 510 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEe
Confidence 4588999999999988876542 12221122345778888999999999999999887543
No 258
>2z34_C Protein HIR1; histone chaperone, nucleosome disassmebly/assembly, chromatin regulation, chromatin regulator, coiled coil, nucleus; 2.40A {Schizosaccharomyces pombe}
Probab=98.31 E-value=2.4e-07 Score=55.07 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=20.1
Q ss_pred CcccceeEECCCCceeeceeeccCC
Q 040062 473 SPVKQREYRRPDGRKRIIPEAVGVP 497 (689)
Q Consensus 473 ~~~~q~~~~~~dg~~r~~p~~~~~~ 497 (689)
+.++|+.+++|||||||+|+|++..
T Consensus 3 ~~~~q~VtitK~GKKRVaP~LvS~~ 27 (29)
T 2z34_C 3 TKFVQKVTITKEGKKRVAPQLLTTL 27 (29)
T ss_dssp ---CCCEEECTTSCEEECCEEEEC-
T ss_pred chhcceEEEeeCCceeecceeeecc
Confidence 5689999999999999999999854
No 259
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.31 E-value=6.1e-05 Score=87.35 Aligned_cols=113 Identities=14% Similarity=0.064 Sum_probs=76.9
Q ss_pred cEEEEEEc-CCCCEEEEEeC-C----CeEEEEEcCCC-CCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE
Q 040062 68 SVNCVRWA-KHGRYIASGSD-D----QVILIHEKKPG-SGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL 140 (689)
Q Consensus 68 ~V~~v~fs-pdg~~Lasgs~-D----g~I~iwdl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L 140 (689)
.+...+|| |||++||.+.. + ..|+++|+.++ .... ..+ .. ....++|+||++.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~-------------~~~---~~---~~~~~~WspDg~~l 235 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIA-------------DKV---SG---TNGEIVWGPDHTSL 235 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCC-------------CCE---EE---ECSCCEECSSTTEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCC-------------ccc---cC---ceeeEEEecCCCEE
Confidence 68889999 99999886543 2 25999999876 3110 001 10 13467899999988
Q ss_pred EEEeCC-----CeEEEEEcCCCeE--EEEEe-cCCCCeEEEEEccCCCEEEEEeC---CCeEEEEECCCC
Q 040062 141 ASGSLD-----NTIHIWNMSTGIC--TAVLR-GHSSLVKGVAWDPIGSFIASQSD---DKTVIIWRTSDW 199 (689)
Q Consensus 141 asgs~D-----g~I~vwd~~~~~~--~~~l~-~h~~~V~~l~~spdg~~las~s~---Dg~I~iwd~~~~ 199 (689)
+....| ..|+++++.++.. ...+. .+......+.|+|||++|+..+. ...|.++|+.++
T Consensus 236 ~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 236 FYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 877765 3688889877642 23332 23345678899999998887652 346888898765
No 260
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.29 E-value=0.00013 Score=71.84 Aligned_cols=128 Identities=7% Similarity=0.052 Sum_probs=87.7
Q ss_pred eeeeeecCCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEc
Q 040062 57 RLLATLRDHF--GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWS 134 (689)
Q Consensus 57 ~~~~~l~~h~--~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 134 (689)
+.+.++. |. .....+.|+ ++.++.+.+.+|.|+++|+++++.. ..+ +.. ...-..+++.
T Consensus 44 ~Vv~~~p-hd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~--------------~~~--l~~-~~FgeGit~~ 104 (268)
T 3nok_A 44 HIIREYP-HATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPV--------------WME--RLG-NIFAEGLASD 104 (268)
T ss_dssp EEEEEEE-CCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCS--------------EEE--ECT-TCCEEEEEEC
T ss_pred EEEEEEc-CCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEE--------------eEE--CCC-CcceeEEEEe
Confidence 4555553 43 346889998 4677788888899999999998432 111 222 1112335554
Q ss_pred CCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 135 PDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 135 pdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
. +++.+....++.+.+||..+.+.+..+... ..-.+++ ++++.|+.+..++.|.++|..+++.+..+..
T Consensus 105 g-~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V 173 (268)
T 3nok_A 105 G-ERLYQLTWTEGLLFTWSGMPPQRERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQV 173 (268)
T ss_dssp S-SCEEEEESSSCEEEEEETTTTEEEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred C-CEEEEEEccCCEEEEEECCcCcEEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence 2 344445557899999999999999999853 3334555 5678888777788999999999887776653
No 261
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.28 E-value=0.0017 Score=66.92 Aligned_cols=274 Identities=12% Similarity=0.160 Sum_probs=143.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee-ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT-LRDHFGSVNCVRWAKHGRYIASGSDDQVILI 92 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~i 92 (689)
..+.+|.|.+++..+++ +.+|.|. +..+. .. ..+.+.. .......+.+|.|.+ +..++ ++.++.|..
T Consensus 36 ~~~~~v~~~~~~~~~~~-G~~g~i~-~s~Dg-G~-------tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i~~ 103 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLV-GVNATLM-ETRDG-GQ-------TWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIMLH 103 (327)
T ss_dssp SCEEEEEESSSSCEEEE-ETTTEEE-EESST-TS-------SCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEEEE
T ss_pred CcEEEEEECCCCcEEEE-cCCCeEE-EeCCC-CC-------CCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeEEE
Confidence 47999999988887775 4567653 22221 11 1122211 112344688999986 44444 455664433
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-EEEEecCCCCeE
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC-TAVLRGHSSLVK 171 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~-~~~l~~h~~~V~ 171 (689)
..+.+ ..|+.+.....+...+..+.+.+++..++++ .++.|..- ...++. ......+...+.
T Consensus 104 -S~DgG--------------~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~ 166 (327)
T 2xbg_A 104 -TTDGG--------------QSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMR 166 (327)
T ss_dssp -ESSTT--------------SSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEE
T ss_pred -ECCCC--------------CCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEEE-cCCCCCCEEeecCCCcceE
Confidence 33323 3344433222233456778777666655554 45654322 222322 222334566789
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEEC--CCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee--
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRT--SDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE-- 247 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~-- 247 (689)
.+.+.+++.+++.+...+..+-+|- .+++.+... ....+..+.+++++..+++... ..+....
T Consensus 167 ~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~--------~~~~~~~~~~~~~g~~~~~~~~-----G~~~~s~~D 233 (327)
T 2xbg_A 167 NLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRT--------TSRRLHNMGFTPDGRLWMIVNG-----GKIAFSDPD 233 (327)
T ss_dssp EEEECTTSCEEEEETTSSEEEEECTTCSSCEEEECC--------SSSCEEEEEECTTSCEEEEETT-----TEEEEEETT
T ss_pred EEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCCC--------CCCccceeEECCCCCEEEEeCC-----ceEEEecCC
Confidence 9999999888877654443344442 334433211 1224778889999887766532 1122221
Q ss_pred -cCCceeeeee-cCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCC
Q 040062 248 -RGEWAATFDF-LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTAS 325 (689)
Q Consensus 248 -~~~~~~~~~l-~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~ 325 (689)
-.+|.....- ..+...+..+.|.+++ .+++++ .++.| ++..+.
T Consensus 234 ~G~tW~~~~~~~~~~~~~~~~v~~~~~~---------------------------------~~~~~g-~~g~i-~~S~Dg 278 (327)
T 2xbg_A 234 NSENWGELLSPLRRNSVGFLDLAYRTPN---------------------------------EVWLAG-GAGAL-LCSQDG 278 (327)
T ss_dssp EEEEECCCBCTTSSCCSCEEEEEESSSS---------------------------------CEEEEE-STTCE-EEESST
T ss_pred CCCeeEeccCCcccCCcceEEEEecCCC---------------------------------EEEEEe-CCCeE-EEeCCC
Confidence 1122221110 0122346777776553 455544 46766 445555
Q ss_pred CCceEEeccc--CCCCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 326 PRPLFVAKHF--FTQSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 326 ~~~~~~~~~~--h~~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
++.-..+... ....+.++.|.+++. +++++.+|.|.-++
T Consensus 279 G~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 279 GQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp TSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred CcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 5544433321 235678899986555 66677789766554
No 262
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.27 E-value=0.0001 Score=82.51 Aligned_cols=168 Identities=11% Similarity=0.044 Sum_probs=93.7
Q ss_pred CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC--C--cEEE-EEEcCCCCEEEEEeC------CCeEEEE
Q 040062 25 ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF--G--SVNC-VRWAKHGRYIASGSD------DQVILIH 93 (689)
Q Consensus 25 g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~--~--~V~~-v~fspdg~~Lasgs~------Dg~I~iw 93 (689)
+.++++++.|+.|..+|.++ ++.+....... . .+.+ .... ++ .++.++. ++.|..+
T Consensus 115 ~~~v~v~~~dg~l~alD~~t-----------G~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~ 181 (571)
T 2ad6_A 115 AGQIVKKQANGHLLALDAKT-----------GKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAF 181 (571)
T ss_dssp TTEEEEECTTSEEEEEETTT-----------CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEE
T ss_pred CCEEEEEeCCCEEEEEECCC-----------CCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEE
Confidence 45778888899999999987 45544433111 0 1111 0111 34 4555554 7899999
Q ss_pred EcCCCCCccccCCCCCC---------------------CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC------
Q 040062 94 EKKPGSGTTEFGSGEPP---------------------DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD------ 146 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~---------------------~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D------ 146 (689)
|..+++..-.+....+. ....|..-....+.......+++.++...++.+..+
T Consensus 182 D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~ 261 (571)
T 2ad6_A 182 DLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNE 261 (571)
T ss_dssp ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred ECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccC
Confidence 99998643322211100 000000000000000011234566665666655432
Q ss_pred ----------CeEEEEEcCCCeEEEEEecC--C--------CCeEEEEEccCCC---EEEEEeCCCeEEEEECCCCccee
Q 040062 147 ----------NTIHIWNMSTGICTAVLRGH--S--------SLVKGVAWDPIGS---FIASQSDDKTVIIWRTSDWSLAH 203 (689)
Q Consensus 147 ----------g~I~vwd~~~~~~~~~l~~h--~--------~~V~~l~~spdg~---~las~s~Dg~I~iwd~~~~~~~~ 203 (689)
+.|..+|..+++.+..++.. . .++. +....+|+ .++.++.+|.++++|..+++.+.
T Consensus 262 ~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w 340 (571)
T 2ad6_A 262 TMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIV 340 (571)
T ss_dssp GGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred CccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEe
Confidence 36999999999998887632 1 2221 22234674 57788899999999999998877
Q ss_pred ecc
Q 040062 204 RTD 206 (689)
Q Consensus 204 ~~~ 206 (689)
...
T Consensus 341 ~~~ 343 (571)
T 2ad6_A 341 AEK 343 (571)
T ss_dssp EEE
T ss_pred eec
Confidence 654
No 263
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.26 E-value=0.00024 Score=73.08 Aligned_cols=184 Identities=10% Similarity=0.041 Sum_probs=114.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec--------------------CCCCcEEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR--------------------DHFGSVNCVRW 74 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~--------------------~h~~~V~~v~f 74 (689)
.-.+++|+++|+++.++..++.|..|+... .+ +..+. ...+.+.++++
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~-----------~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~ 87 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPN-----------SG-FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISY 87 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTT-----------TC-EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCC-----------Cc-eEEEecccccccccccccccchhccccCCCCceEEE
Confidence 356788999998788888889999998764 11 11111 01235789999
Q ss_pred cC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEE-EEec-CCCCEEEEEEcC-CCCEEEEEeC-----
Q 040062 75 AK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRG-HTADVVDLNWSP-DDSILASGSL----- 145 (689)
Q Consensus 75 sp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~l~~sp-dg~~Lasgs~----- 145 (689)
.+ +++ |+.+...+.|..+|..++.. +.+. ...+ ......++++.+ +|+++++-..
T Consensus 88 ~~~~g~-l~v~d~~~~i~~~d~~~g~~---------------~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~ 151 (322)
T 2fp8_A 88 NLQNNQ-LYIVDCYYHLSVVGSEGGHA---------------TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDD 151 (322)
T ss_dssp ETTTTE-EEEEETTTEEEEECTTCEEC---------------EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCT
T ss_pred cCCCCc-EEEEECCCCEEEEeCCCCEE---------------EEecccCCCCcccccceEEEecCCCEEEEECCcccccc
Confidence 98 665 44454445577887664310 1111 1111 123578899999 8886665432
Q ss_pred ------------CCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEE-eCCCeEEEEECCCCcc--eeeccCccc
Q 040062 146 ------------DNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTSDWSL--AHRTDGHWA 210 (689)
Q Consensus 146 ------------Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~~~~~--~~~~~~~~~ 210 (689)
++.|..||..+++....... ......|+|++++++|+.+ ..++.|.+|++..... ...+..
T Consensus 152 ~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~--- 227 (322)
T 2fp8_A 152 RGVQQIMDTSDKTGRLIKYDPSTKETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK--- 227 (322)
T ss_dssp TCHHHHHHHTCCCEEEEEEETTTTEEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---
T ss_pred cccceehcccCCCceEEEEeCCCCEEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---
Confidence 36799999877765433322 2344679999999866655 4568999999875321 111110
Q ss_pred ccCCcccEEEEEEcCCCCeEEEec
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
..+ ...++++++|++.++..
T Consensus 228 -~~g---P~gi~~d~~G~l~va~~ 247 (322)
T 2fp8_A 228 -IPN---PGNIKRNADGHFWVSSS 247 (322)
T ss_dssp -CSS---EEEEEECTTSCEEEEEE
T ss_pred -CCC---CCCeEECCCCCEEEEec
Confidence 011 56789999998666643
No 264
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.26 E-value=0.0022 Score=66.85 Aligned_cols=184 Identities=10% Similarity=-0.011 Sum_probs=111.9
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-SDDQVILIH 93 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~Dg~I~iw 93 (689)
...|.+..++. +|+.+.. ..|+..++.. ... ..+......+..++|++.+..|..+ ...+.|..+
T Consensus 35 ~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g-----------~~~-~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~ 100 (349)
T 3v64_C 35 RRSCKALGPEP-VLLFANR-IDIRQVLPHR-----------SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRA 100 (349)
T ss_dssp SSCEEESSSCC-EEEEECB-SCEEEECTTS-----------CCE-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCcccccccCc-eeEeecc-cceEEEeCCC-----------Cee-EEeecCCCceEEEEEeccccEEEEEeccCCceEEE
Confidence 35666666644 4444433 4577777764 222 2222233457899999765555544 457889999
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKG 172 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~ 172 (689)
+++... ....+.........|++.+.+..| ++-...+.|.+.++........+...-....+
T Consensus 101 ~~~g~~-----------------~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~ 163 (349)
T 3v64_C 101 NLNGSN-----------------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRA 163 (349)
T ss_dssp ETTSCS-----------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEE
T ss_pred ecCCCC-----------------ceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcce
Confidence 887652 111222223445788888755544 55556679999998755444444444466789
Q ss_pred EEEccCCCEEEEEe-CC-CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 173 VAWDPIGSFIASQS-DD-KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 173 l~~spdg~~las~s-~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
|+++|.+.+|+... .+ +.|..++++.......+.. .......+++++++..|+.+..
T Consensus 164 iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~------~~~~PnGla~d~~~~~lY~aD~ 222 (349)
T 3v64_C 164 IALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT------HLFWPNGLTIDYAGRRMYWVDA 222 (349)
T ss_dssp EEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCS------SCSCEEEEEEETTTTEEEEEET
T ss_pred EEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEEC------CCCCcceEEEeCCCCEEEEEEC
Confidence 99999766555544 44 6788888864333222221 1233688999998888887754
No 265
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.24 E-value=0.00035 Score=68.12 Aligned_cols=193 Identities=9% Similarity=0.013 Sum_probs=123.5
Q ss_pred ccceEEEEEecCC--CCEEEEEEcCCCCEEEEEeCC--CeEEEEEcCCCeEEEEEecCCCC-eEEEEEccCCCEEE-EEe
Q 040062 113 ENWKVAMTLRGHT--ADVVDLNWSPDDSILASGSLD--NTIHIWNMSTGICTAVLRGHSSL-VKGVAWDPIGSFIA-SQS 186 (689)
Q Consensus 113 ~~~~~~~~l~~h~--~~V~~l~~spdg~~Lasgs~D--g~I~vwd~~~~~~~~~l~~h~~~-V~~l~~spdg~~la-s~s 186 (689)
..++.+.++ .|. .-...|.|+. +.++.+.+.+ +.|+++|+.+++.+..+...... --++++. ++.|. ..-
T Consensus 7 ~~~~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw 82 (243)
T 3mbr_X 7 QGYRVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTW 82 (243)
T ss_dssp CCEEEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEES
T ss_pred cceEEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEe
Confidence 344666666 465 3477999985 5566666664 49999999999999888743322 2344544 44444 445
Q ss_pred CCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecC--CC---
Q 040062 187 DDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLG--HN--- 261 (689)
Q Consensus 187 ~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--h~--- 261 (689)
.++.+.+||..+.+.+.++..... ...+.+++..|+.+.+ ...+.+++..+......+.- +.
T Consensus 83 ~~~~v~v~D~~tl~~~~ti~~~~~---------Gwglt~dg~~L~vSdg----s~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 83 RNHEGFVYDLATLTPRARFRYPGE---------GWALTSDDSHLYMSDG----TAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp SSSEEEEEETTTTEEEEEEECSSC---------CCEEEECSSCEEEECS----SSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred eCCEEEEEECCcCcEEEEEeCCCC---------ceEEeeCCCEEEEECC----CCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 688999999999999988875421 1233457787877754 33456666665544332211 11
Q ss_pred CCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc------
Q 040062 262 APIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF------ 335 (689)
Q Consensus 262 ~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~------ 335 (689)
..+..+.|. ++.+++..-.+..|.+.|.++++.+..+...
T Consensus 150 ~~lNeLe~~----------------------------------~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~ 195 (243)
T 3mbr_X 150 DNLNELEWV----------------------------------NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDA 195 (243)
T ss_dssp CCEEEEEEE----------------------------------TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTT
T ss_pred ccceeeEEe----------------------------------CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCcccc
Confidence 112222322 2355555556789999999999988776532
Q ss_pred ------CCCCeEEEEEccCCCeEEEEe
Q 040062 336 ------FTQSVVDLSWSPDGYSLFACS 356 (689)
Q Consensus 336 ------h~~~V~~l~~spdg~~L~sgs 356 (689)
...-.+.++|+|+++.|++.+
T Consensus 196 ~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 196 DALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 123568999999888777766
No 266
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.24 E-value=0.0017 Score=68.67 Aligned_cols=183 Identities=11% Similarity=0.009 Sum_probs=111.1
Q ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEE
Q 040062 16 IFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SGSDDQVILIHE 94 (689)
Q Consensus 16 I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~Dg~I~iwd 94 (689)
-.|.+..+.+ +|+.+.. ..|+.+++.. ... ..+.........++|++.+..|. +-...+.|..++
T Consensus 79 ~~C~~~~~~~-~l~~~~~-~~I~~i~~~~-----------~~~-~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~ 144 (386)
T 3v65_B 79 RSCKALGPEP-VLLFANR-IDIRQVLPHR-----------SEY-TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRAN 144 (386)
T ss_dssp SCEEECSSCC-EEEEECB-SCEEEECTTS-----------CCC-EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CeECCccccc-eeEeecC-ccceeeccCC-----------CcE-EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEe
Confidence 3455555533 4444433 5688888764 222 22222344588999997655554 445668899998
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGV 173 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l 173 (689)
++... ....+.........|++.+.+..| ++-...+.|.+.++........+...-....+|
T Consensus 145 ~~g~~-----------------~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~gi 207 (386)
T 3v65_B 145 LNGSN-----------------VEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAI 207 (386)
T ss_dssp TTSCC-----------------EEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEE
T ss_pred cCCCC-----------------cEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEE
Confidence 87651 222222223345678888755544 444556789999886554444444444677899
Q ss_pred EEccCCCEEEEEe-CC-CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 174 AWDPIGSFIASQS-DD-KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 174 ~~spdg~~las~s-~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+++|.+.+|+.+. .. +.|..++++........... ......++|++++..|+.+..
T Consensus 208 avdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~------~~~PnGlavd~~~~~lY~aD~ 265 (386)
T 3v65_B 208 ALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTH------LFWPNGLTIDYAGRRMYWVDA 265 (386)
T ss_dssp EEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSS------CSCEEEEEEEGGGTEEEEEET
T ss_pred EEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECC------CCCeeeEEEeCCCCEEEEEEC
Confidence 9999776665554 33 67888887654333222211 223688999998888877754
No 267
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.22 E-value=0.00028 Score=75.92 Aligned_cols=144 Identities=10% Similarity=0.094 Sum_probs=91.0
Q ss_pred cEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC
Q 040062 68 SVNCVRWAK-HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD 146 (689)
Q Consensus 68 ~V~~v~fsp-dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D 146 (689)
....|+|+| ++..|..+...+.|+.+|++.+ .+..+.........|+|++++++|+++...
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~------------------~v~~~~~~~~~P~~ia~d~~G~~lyvad~~ 199 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKE------------------YVSTVYSGLSKVRTICWTHEADSMIITNDQ 199 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTT------------------EEEEEECCCSCEEEEEECTTSSEEEEEECC
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCC------------------EEEEEecCCCCcceEEEeCCCCEEEEEeCC
Confidence 457889998 4556666655578888888765 233333355668999999999966666542
Q ss_pred -C----eEEEEEcCCCeE-EEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEE
Q 040062 147 -N----TIHIWNMSTGIC-TAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFR 219 (689)
Q Consensus 147 -g----~I~vwd~~~~~~-~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~ 219 (689)
+ .+.+++...... ...+. ......+++++| ++.++++-..++.|..|+............. .....+
T Consensus 200 ~~~~~~~v~~~~~~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-----~~~~P~ 273 (430)
T 3tc9_A 200 NNNDRPNNYILTRESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-----DSGWEF 273 (430)
T ss_dssp SCTTSEEEEEEEGGGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECS-----SSSCCE
T ss_pred CCcccceEEEEeCCCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcC-----CCCcce
Confidence 1 344444322111 12222 233456789999 6776666667789999999866542221111 112357
Q ss_pred EEEEcCCCCeEEEecC
Q 040062 220 RLGWSPCGHFITTTHG 235 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~ 235 (689)
.++|+|+|++|+.+..
T Consensus 274 gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 274 HIQFHPSGNYAYIVVV 289 (430)
T ss_dssp EEEECTTSSEEEEEET
T ss_pred eEEEcCCCCEEEEEEC
Confidence 8999999997777654
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.20 E-value=0.004 Score=63.75 Aligned_cols=177 Identities=10% Similarity=0.011 Sum_probs=105.6
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCCccccC
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
+|+.+.. ..|+..|+.. ......+. .......++|++.+..|. +-..++.|..+++.......
T Consensus 3 ~ll~~~~-~~I~~i~~~~-----------~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~--- 66 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDR-----------SEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS--- 66 (316)
T ss_dssp EEEEECB-SSEEEEETTS-----------CCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----------
T ss_pred EEEEECC-CeEEEEECCC-----------cceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCc---
Confidence 4555444 5688889875 22222232 345678999998665554 44556889999887520000
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIAS 184 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las 184 (689)
.....+...-.....|++.+.+..| ++-...+.|.++|+........+........+++++|.+.+|+.
T Consensus 67 ----------~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~ 136 (316)
T 1ijq_A 67 ----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYW 136 (316)
T ss_dssp -----------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEE
T ss_pred ----------ccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEE
Confidence 1111122222456788998755544 45456789999998755444444434467789999997766655
Q ss_pred EeCC--CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 185 QSDD--KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 185 ~s~D--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+... +.|..++++.. ....+... .......+++++++..|+.+..
T Consensus 137 ~d~~~~~~I~~~~~dG~-~~~~~~~~-----~~~~P~gla~d~~~~~lY~~D~ 183 (316)
T 1ijq_A 137 TDWGTPAKIKKGGLNGV-DIYSLVTE-----NIQWPNGITLDLLSGRLYWVDS 183 (316)
T ss_dssp EECSSSCEEEEEETTSC-CEEEEECS-----SCSCEEEEEEETTTTEEEEEET
T ss_pred EccCCCCeEEEEcCCCC-CeEEEEEC-----CCCCceEEEEeccCCEEEEEEC
Confidence 5543 67888887543 22222110 1234688999999888887754
No 269
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.17 E-value=0.0002 Score=80.18 Aligned_cols=164 Identities=12% Similarity=0.091 Sum_probs=93.4
Q ss_pred EEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCC----CcEEE-EEEcCCCCEEEEEe------CCCeEEEEEcC
Q 040062 28 FATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHF----GSVNC-VRWAKHGRYIASGS------DDQVILIHEKK 96 (689)
Q Consensus 28 Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~-v~fspdg~~Lasgs------~Dg~I~iwdl~ 96 (689)
|++++.|+.|.-+|.++ ++.+....... ..+.+ .... ++ .++.++ .++.|+.+|..
T Consensus 124 V~v~t~dg~l~AlDa~T-----------G~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~ 190 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAET-----------GETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVK 190 (599)
T ss_dssp EEEECTTSEEEEEETTT-----------CCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETT
T ss_pred EEEEcCCCEEEEEECCC-----------CCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECC
Confidence 88888899999999887 45444432211 01111 0111 34 444444 37999999999
Q ss_pred CCCCccccCCCCCCC---------------------cccceEEEEE-ecCCCCEEEEEEcCCCCEEEEEeCC--------
Q 040062 97 PGSGTTEFGSGEPPD---------------------IENWKVAMTL-RGHTADVVDLNWSPDDSILASGSLD-------- 146 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~---------------------~~~~~~~~~l-~~h~~~V~~l~~spdg~~Lasgs~D-------- 146 (689)
+++..-.+....+.. ...|.- ..+ .+....-..+++.++..+++.+..+
T Consensus 191 TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g-~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~ 269 (599)
T 1w6s_A 191 TGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEG-DAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETM 269 (599)
T ss_dssp TCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSST-TGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGG
T ss_pred CCcEEEEEcCCCCccccccccccccccccccccccccccCCC-cceecCCCccccceeEeCCCCEEEEeCCCCccccCcc
Confidence 986433222111000 000000 000 0000001134566666677766654
Q ss_pred --------CeEEEEEcCCCeEEEEEecCC----------CCeEEEEEc-cCC---CEEEEEeCCCeEEEEECCCCcceee
Q 040062 147 --------NTIHIWNMSTGICTAVLRGHS----------SLVKGVAWD-PIG---SFIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 147 --------g~I~vwd~~~~~~~~~l~~h~----------~~V~~l~~s-pdg---~~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
+.|..+|..+++.+..++... .++. +... .+| ..++.++.+|.++++|.++++++..
T Consensus 270 r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 270 RPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp SCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred cCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 489999999999988876432 1221 2222 467 4677788999999999999998876
Q ss_pred cc
Q 040062 205 TD 206 (689)
Q Consensus 205 ~~ 206 (689)
..
T Consensus 349 ~~ 350 (599)
T 1w6s_A 349 NK 350 (599)
T ss_dssp EE
T ss_pred cc
Confidence 54
No 270
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.17 E-value=0.00045 Score=77.33 Aligned_cols=77 Identities=13% Similarity=0.079 Sum_probs=54.3
Q ss_pred EEEEcCCCCEEEEEeC--------------------C----CeEEEEEcCCCeEEEEEec--CC--------CCeEEEEE
Q 040062 130 DLNWSPDDSILASGSL--------------------D----NTIHIWNMSTGICTAVLRG--HS--------SLVKGVAW 175 (689)
Q Consensus 130 ~l~~spdg~~Lasgs~--------------------D----g~I~vwd~~~~~~~~~l~~--h~--------~~V~~l~~ 175 (689)
.+++.++..+++.+.. | +.|..+|..+++.+..++. |. .++. +..
T Consensus 250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~ 328 (582)
T 1flg_A 250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDY 328 (582)
T ss_dssp CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEE
T ss_pred CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-Eee
Confidence 4566777677766653 2 6899999999999988753 32 1221 222
Q ss_pred c-cCCC---EEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 176 D-PIGS---FIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 176 s-pdg~---~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
. .+|+ .++.++.+|.++++|.++++++..+..
T Consensus 329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~ 364 (582)
T 1flg_A 329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF 364 (582)
T ss_dssp ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES
T ss_pred ecCCCCEEEEEEEECCCceEEEEECCCCCEeccccc
Confidence 2 4674 788899999999999999998866543
No 271
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.17 E-value=0.0048 Score=65.51 Aligned_cols=178 Identities=10% Similarity=0.030 Sum_probs=110.3
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCCCcccc
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASG-SDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasg-s~Dg~I~iwdl~~~~~~~~~ 104 (689)
.+|+.+.. ..|+..++.. .. ...+......+..|+|++.+..|... ...+.|..++++......
T Consensus 84 ~~ll~~~~-~~I~~i~l~~-----------~~-~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-- 148 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDR-----------SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-- 148 (400)
T ss_dssp CEEEEEET-TEEEEECTTS-----------CS-CEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C--
T ss_pred ceeEEecc-ceeEEEccCC-----------cc-eeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC--
Confidence 35555544 6788888875 22 22223345678999999865555544 456888888886531000
Q ss_pred CCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEE
Q 040062 105 GSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIA 183 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 183 (689)
.....+.........|++.+.+. ++++-...+.|.+.++........+........+|+++|.+.+|+
T Consensus 149 -----------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly 217 (400)
T 3p5b_L 149 -----------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMY 217 (400)
T ss_dssp -----------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEE
T ss_pred -----------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEE
Confidence 11222232345678899987544 445555678999999876655555554456688999999776666
Q ss_pred EEeC--CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 184 SQSD--DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 184 s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.... .+.|...+++.......+... ......+++++++..|+.+..
T Consensus 218 ~td~~~~~~I~~~~~dG~~~~~~~~~~------l~~P~glavd~~~~~lY~aD~ 265 (400)
T 3p5b_L 218 WTDWGTPAKIKKGGLNGVDIYSLVTEN------IQWPNGITLDLLSGRLYWVDS 265 (400)
T ss_dssp EEECSSSCCEEEEETTSCSCEEEECSS------CSCEEEEEEETTTTEEEEEET
T ss_pred EEeCCCCCEEEEEeCCCCccEEEEECC------CCceEEEEEEeCCCEEEEEEC
Confidence 6552 367888888654333322221 234688999999888888754
No 272
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.17 E-value=0.00027 Score=79.12 Aligned_cols=60 Identities=12% Similarity=0.130 Sum_probs=44.0
Q ss_pred CCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccccccc
Q 040062 314 QDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELGHRL 375 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l 375 (689)
.+|.|..||+.+++.+....... .+..-.....+.++++++.||.++.||.++++++..+
T Consensus 464 ~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~ 523 (582)
T 1flg_A 464 HVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKF 523 (582)
T ss_dssp CSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred CcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEe
Confidence 36889999999999887765432 2222222234678888999999999999999887543
No 273
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.16 E-value=0.00038 Score=71.01 Aligned_cols=251 Identities=11% Similarity=0.037 Sum_probs=131.6
Q ss_pred CcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCC--
Q 040062 111 DIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDD-- 188 (689)
Q Consensus 111 ~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~D-- 188 (689)
+....+.+..+... .....++|+++++++++-..++.|..||.... ....+. ....+.+++++++|+++++....
T Consensus 18 ~~~~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~ 94 (306)
T 2p4o_A 18 ELAPAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADS 94 (306)
T ss_dssp CCCCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTS
T ss_pred cCCCceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCc
Confidence 33444666666543 56889999999987777668899999998654 333333 34568899999999976665433
Q ss_pred CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEE
Q 040062 189 KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVK 268 (689)
Q Consensus 189 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~ 268 (689)
..|..+|..+++........ ...+...++..+++..+++... ...+..++......... .
T Consensus 95 ~~v~~~d~~~g~~~~~~~~~-----~~~~~~g~~~~~~~~~~v~d~~----~g~i~~~d~~~~~~~v~-----------~ 154 (306)
T 2p4o_A 95 IPVVSLVKSDGTVETLLTLP-----DAIFLNGITPLSDTQYLTADSY----RGAIWLIDVVQPSGSIW-----------L 154 (306)
T ss_dssp CEEEEEECTTSCEEEEEECT-----TCSCEEEEEESSSSEEEEEETT----TTEEEEEETTTTEEEEE-----------E
T ss_pred ceEEEEcCCCCeEEEEEeCC-----CccccCcccccCCCcEEEEECC----CCeEEEEeCCCCcEeEE-----------E
Confidence 24777777777654332211 1112344444444443333211 12233333221110000 0
Q ss_pred EcCCccccccccccccccccccccCCcccccCccCCCCc-EEEEEeCCCcEEEEeCCC-CCc--eEEecccCCCCeEEEE
Q 040062 269 FNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN-VIAIGSQDRTITVWTTAS-PRP--LFVAKHFFTQSVVDLS 344 (689)
Q Consensus 269 fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~lasgs~Dg~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~ 344 (689)
..+..... ... ..-..... . ++++. ++++-...+.|..|++.. ++. ...+.. ......++
T Consensus 155 ~~~~~~~~----------~~~--~~~~~png-i-s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~ 218 (306)
T 2p4o_A 155 EHPMLARS----------NSE--SVFPAANG-L-KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFA 218 (306)
T ss_dssp ECGGGSCS----------STT--CCSCSEEE-E-EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEE
T ss_pred ECCccccc----------ccc--CCCCcCCC-c-CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeE
Confidence 00000000 000 00000000 0 22334 445555678899999875 321 112111 13467799
Q ss_pred EccCCCeEEEEeCCCcEEEEEeeccccccccChHHHHHHHHhccCCccCceeeeecC---chhhhhHhhcc
Q 040062 345 WSPDGYSLFACSLDGTVANFHFEVKELGHRLSDAELDELKRSRYGDVRGRLANLAET---PAQLLLEAASA 412 (689)
Q Consensus 345 ~spdg~~L~sgs~DG~I~vwd~~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~S---pdg~~Las~s~ 412 (689)
++++|+++++....+.|.+|+.+ +++..... ... .....++++|. +|+..|..++.
T Consensus 219 vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~---------~~~--~~~~p~~~a~~g~~~d~~~LyVt~~ 277 (306)
T 2p4o_A 219 FDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ---------AEQ--GVIGSTAVAFGQTEGDCTAIYVVTN 277 (306)
T ss_dssp EBTTCCEEEECBTTCCEEEECTT-CCEEEEEC---------GGG--TCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred ECCCCCEEEEeCCCCeEEEECCC-CCEEEEee---------ccc--ccCCceEEEEecccCCCCEEEEECC
Confidence 99999876666667899999864 44321100 000 11247899998 88766655443
No 274
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.12 E-value=0.00069 Score=72.87 Aligned_cols=144 Identities=9% Similarity=0.060 Sum_probs=87.6
Q ss_pred cEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC
Q 040062 68 SVNCVRWAKH--GRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL 145 (689)
Q Consensus 68 ~V~~v~fspd--g~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~ 145 (689)
....|+|+|+ +..|..+...+.|+.+++.++ .+..+.........|+|+++++ |+.+..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g------------------~v~~~~~~~~~P~giavd~dG~-lyVad~ 200 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQ------------------YVDIKTTNIGQCADVNFTLNGD-MVVVDD 200 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTT------------------EEEEECCCCSCEEEEEECTTCC-EEEEEC
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCC------------------EEEEeecCCCCccEEEECCCCC-EEEEcC
Confidence 4578999984 445555554488999998765 3334444556689999999999 444443
Q ss_pred CC-----eEEEEEcCCCeE-EEEEecCCCCeEEEEEcc-CCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccE
Q 040062 146 DN-----TIHIWNMSTGIC-TAVLRGHSSLVKGVAWDP-IGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFF 218 (689)
Q Consensus 146 Dg-----~I~vwd~~~~~~-~~~l~~h~~~V~~l~~sp-dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i 218 (689)
.+ .+..++...+.. ...+. .......++++| ++.++++-..++.|+.+|..++.....+..... ....
T Consensus 201 ~~~~~~~gv~~~~~~~~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~----~~~~ 275 (433)
T 4hw6_A 201 QSSDTNTGIYLFTRASGFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDT----KGSN 275 (433)
T ss_dssp CSCTTSEEEEEECGGGTTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSC----CSSC
T ss_pred CCCcccceEEEEECCCCeecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCC----CCCc
Confidence 21 244444322211 11222 234456789999 676666666778899999886665222211110 1123
Q ss_pred EEEEEcCCCCeEEEecC
Q 040062 219 RRLGWSPCGHFITTTHG 235 (689)
Q Consensus 219 ~~l~~spdg~~l~~~~~ 235 (689)
..++|+|+|++|+.+..
T Consensus 276 ~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 276 FHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp EEEEECTTSSEEEEEET
T ss_pred ccEEEeCCCCEEEEEeC
Confidence 46999999997777654
No 275
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.11 E-value=0.0015 Score=64.53 Aligned_cols=210 Identities=11% Similarity=0.078 Sum_probs=128.5
Q ss_pred EEEecCCCCEEEEEEcCCCCEE-EEEeCCCeEEEEEcCCCeEEEEEec-CCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 119 MTLRGHTADVVDLNWSPDDSIL-ASGSLDNTIHIWNMSTGICTAVLRG-HSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 119 ~~l~~h~~~V~~l~~spdg~~L-asgs~Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
+.+.+-...+..|+|+|++..| ++...++.|...|.. ++.+..+.- -....-+|++.+++.++++.-.++.+.++++
T Consensus 20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v 98 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL 98 (255)
T ss_dssp EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence 3455666789999999987655 456778899999997 888877742 2356789999998887777667789999998
Q ss_pred CCCcce---eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec--CCceeeee------ecCCCCCEE
Q 040062 197 SDWSLA---HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER--GEWAATFD------FLGHNAPII 265 (689)
Q Consensus 197 ~~~~~~---~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~--~~~~~~~~------l~~h~~~v~ 265 (689)
.....+ ...............+..++|+|.++.|+++..... ..+..++. ........ -..+...+.
T Consensus 99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p--~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S 176 (255)
T 3qqz_A 99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP--IEVYKVNGLLSSNELHISKDKALQRQFTLDDVS 176 (255)
T ss_dssp CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS--EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCC
T ss_pred CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC--ceEEEEcccccCCceeeecchhhccccccCCce
Confidence 765432 222211111122344789999999988887654332 11222220 00000000 001122344
Q ss_pred EEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEeccc--C-C-----
Q 040062 266 VVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHF--F-T----- 337 (689)
Q Consensus 266 ~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~--h-~----- 337 (689)
.++|+|. .+.+++.....+.|.++|.. ++.+..+.-. . .
T Consensus 177 ~l~~dp~--------------------------------tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~ 223 (255)
T 3qqz_A 177 GAEFNQQ--------------------------------KNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNI 223 (255)
T ss_dssp EEEEETT--------------------------------TTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCC
T ss_pred eEEEcCC--------------------------------CCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCccccc
Confidence 5555554 34677777788889999865 4444433221 1 1
Q ss_pred CCeEEEEEccCCCeEEEEeCCCcEEEEE
Q 040062 338 QSVVDLSWSPDGYSLFACSLDGTVANFH 365 (689)
Q Consensus 338 ~~V~~l~~spdg~~L~sgs~DG~I~vwd 365 (689)
...-.++|.++|+ |+..++.+.+++|.
T Consensus 224 ~qpEGia~d~~G~-lyIvsE~n~~y~f~ 250 (255)
T 3qqz_A 224 KQAEGVAMDASGN-IYIVSEPNRFYRFT 250 (255)
T ss_dssp CSEEEEEECTTCC-EEEEETTTEEEEEE
T ss_pred CCCCeeEECCCCC-EEEEcCCceEEEEE
Confidence 2567899999997 66667776555553
No 276
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.11 E-value=8.2e-05 Score=84.88 Aligned_cols=119 Identities=8% Similarity=0.121 Sum_probs=76.3
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------eEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEE
Q 040062 18 SIDVQP-GALRFATGGGDH-----------KVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 18 si~~sp-dg~~Latgs~Dg-----------~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasg 84 (689)
++++.+ ++++++.|+.+. .+.+||..+. ....+..+. .+.....++++..++++++.|
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~---------~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~G 260 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTG---------IVSDRTVTVTKHDMFCPGISMDGNGQIVVTG 260 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTC---------CBCCCEEEECSCCCSSCEEEECTTSCEEEEC
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCC---------cEEeCcccCCCCCCccccccCCCCCCEEEeC
Confidence 556677 889999987643 5888998761 122333332 222333456788899999999
Q ss_pred eC-CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CC-----CeEEEEEcCCC
Q 040062 85 SD-DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LD-----NTIHIWNMSTG 157 (689)
Q Consensus 85 s~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~D-----g~I~vwd~~~~ 157 (689)
+. +..+.+||..++ .|..+..+.. ...-..++..+++++++.|+ .+ ..+.+||..+.
T Consensus 261 G~~~~~v~~yd~~t~---------------~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 261 GNDAKKTSLYDSSSD---------------SWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp SSSTTCEEEEEGGGT---------------EEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred CCCCCceEEecCcCC---------------ceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 84 458999998764 3443332221 11223455667899999988 44 57999999887
Q ss_pred eEEE
Q 040062 158 ICTA 161 (689)
Q Consensus 158 ~~~~ 161 (689)
+...
T Consensus 325 ~W~~ 328 (656)
T 1k3i_A 325 TWTS 328 (656)
T ss_dssp EEEE
T ss_pred ccee
Confidence 6443
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.09 E-value=0.0034 Score=65.34 Aligned_cols=240 Identities=8% Similarity=-0.084 Sum_probs=134.9
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCe
Q 040062 70 NCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNT 148 (689)
Q Consensus 70 ~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~ 148 (689)
+|.+..++. +|+.+. ...|+..+++.. .....+. ....+..++|++.+..|+.+. ..+.
T Consensus 37 ~C~~~~~~~-~ll~~~-~~~I~~i~~~g~-----------------~~~~~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~ 96 (349)
T 3v64_C 37 SCKALGPEP-VLLFAN-RIDIRQVLPHRS-----------------EYTLLLN-NLENAIALDFHHRRELVFWSDVTLDR 96 (349)
T ss_dssp CEEESSSCC-EEEEEC-BSCEEEECTTSC-----------------CEEEEEC-SCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred cccccccCc-eeEeec-ccceEEEeCCCC-----------------eeEEeec-CCCceEEEEEeccccEEEEEeccCCc
Confidence 455555533 444443 345777776543 2222222 344589999998766555554 6778
Q ss_pred EEEEEcCCCeEEEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 149 IHIWNMSTGICTAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
|..+++........+........++++++.+. ++++-...+.|.+++++.......+... ......++++|.+
T Consensus 97 I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~------l~~P~~iavdp~~ 170 (349)
T 3v64_C 97 ILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------LEKPRAIALHPME 170 (349)
T ss_dssp EEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT------CSCEEEEEEETTT
T ss_pred eEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC------CCCcceEEEecCc
Confidence 99999977654444443344567899998655 4455556788999998754333222221 1236889999977
Q ss_pred CeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCc
Q 040062 228 HFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYN 307 (689)
Q Consensus 228 ~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 307 (689)
..|+.+.... ...+...+.............-.....+++++.. +.
T Consensus 171 g~ly~td~~~--~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~--------------------------------~~ 216 (349)
T 3v64_C 171 GTIYWTDWGN--TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG--------------------------------RR 216 (349)
T ss_dssp TEEEEEECSS--SCEEEEEETTSCSCEESCCSSCSCEEEEEEETTT--------------------------------TE
T ss_pred CeEEEeccCC--CCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCC--------------------------------CE
Confidence 7777664322 1223333322211111111122345667777653 24
Q ss_pred EEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 308 VIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 308 ~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
++++-...+.|..+|+........+.. .......+++ .++..+++-...+.|..++..+++.
T Consensus 217 lY~aD~~~~~I~~~~~dG~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~ 278 (349)
T 3v64_C 217 MYWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN 278 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEECCCCEEEEEeCCCCceEEEEeC-CCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCCc
Confidence 555555667899999875443333322 2445677888 3444444444567777776444443
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.00 E-value=0.0024 Score=67.54 Aligned_cols=240 Identities=8% Similarity=-0.094 Sum_probs=135.2
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeE
Q 040062 71 CVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTI 149 (689)
Q Consensus 71 ~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I 149 (689)
|.+..+ ..+|+.+. ...|+.+++.... ... +......+..++|++.+..|+.. ...+.|
T Consensus 81 C~~~~~-~~~l~~~~-~~~I~~i~~~~~~-----------------~~~-~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I 140 (386)
T 3v65_B 81 CKALGP-EPVLLFAN-RIDIRQVLPHRSE-----------------YTL-LLNNLENAIALDFHHRRELVFWSDVTLDRI 140 (386)
T ss_dssp EEECSS-CCEEEEEC-BSCEEEECTTSCC-----------------CEE-EECSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred ECCccc-cceeEeec-CccceeeccCCCc-----------------EEE-EecCCCccEEEEEecCCCeEEEEeCCCCcE
Confidence 444444 23444443 3567777776541 112 22234558899999866655544 466789
Q ss_pred EEEEcCCCeEEEEEecCCCCeEEEEEccCCCEE-EEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCC
Q 040062 150 HIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFI-ASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGH 228 (689)
Q Consensus 150 ~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~l-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~ 228 (689)
..+++........+........++++++.+..| ++-...+.|.++++........+... ......++++|.+.
T Consensus 141 ~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~------l~~P~giavdp~~g 214 (386)
T 3v65_B 141 LRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS------LEKPRAIALHPMEG 214 (386)
T ss_dssp EEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS------CSCEEEEEEETTTT
T ss_pred EEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC------CCCCcEEEEEcCCC
Confidence 999997765544444334456789999865544 55556678888888654333222221 22368899999887
Q ss_pred eEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcE
Q 040062 229 FITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNV 308 (689)
Q Consensus 229 ~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 308 (689)
.|+.+.... ...+..++.............-.....+++++.. +.+
T Consensus 215 ~ly~td~~~--~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~--------------------------------~~l 260 (386)
T 3v65_B 215 TIYWTDWGN--TPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAG--------------------------------RRM 260 (386)
T ss_dssp EEEEEECSS--SCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGG--------------------------------TEE
T ss_pred eEEEeccCC--CCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCC--------------------------------CEE
Confidence 777664322 1223333332211111111222335667776553 245
Q ss_pred EEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 309 IAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 309 lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
+++-...+.|..+|+........+.. .......|++ ..+.++++-...+.|..++..+++..
T Consensus 261 Y~aD~~~~~I~~~d~dG~~~~~~~~~-~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~ 322 (386)
T 3v65_B 261 YWVDAKHHVIERANLDGSHRKAVISQ-GLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQ 322 (386)
T ss_dssp EEEETTTTEEEEECTTSCSCEEEECS-SCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred EEEECCCCEEEEEeCCCCeeEEEEEC-CCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcce
Confidence 55555667899999875444333332 2445678888 34444555555677877774455443
No 279
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.00 E-value=0.008 Score=61.50 Aligned_cols=232 Identities=9% Similarity=-0.081 Sum_probs=127.5
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEE-eCCCeEEEEEcCC--
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASG-SLDNTIHIWNMST-- 156 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~-- 156 (689)
+|+.+.. ..|+..|++... ....+ ........++|++++..|+.+ ..++.|..+++..
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~-----------------~~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~ 63 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSE-----------------YTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 63 (316)
T ss_dssp EEEEECB-SSEEEEETTSCC-----------------CEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred EEEEECC-CeEEEEECCCcc-----------------eEehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCC
Confidence 3444433 468888887652 22222 234568899999876655555 4568999999875
Q ss_pred --CeEEEEEecCCCCeEEEEEccCCCE-EEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 157 --GICTAVLRGHSSLVKGVAWDPIGSF-IASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 157 --~~~~~~l~~h~~~V~~l~~spdg~~-las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
......+...-....++++++.+.. +++-..++.|.++++........+... ......++++|.+..|+.+
T Consensus 64 ~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~------~~~P~~iavdp~~g~ly~~ 137 (316)
T 1ijq_A 64 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------GSKPRAIVVDPVHGFMYWT 137 (316)
T ss_dssp ----CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECT------TCCEEEEEEETTTTEEEEE
T ss_pred CCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECC------CCCcceEEeCCCCCEEEEE
Confidence 2222233323345678999975554 455566789999998754333222211 1236889999977766665
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
.... ...+...+.............-.....++++++. +.++++-.
T Consensus 138 d~~~--~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~--------------------------------~~lY~~D~ 183 (316)
T 1ijq_A 138 DWGT--PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS--------------------------------GRLYWVDS 183 (316)
T ss_dssp ECSS--SCEEEEEETTSCCEEEEECSSCSCEEEEEEETTT--------------------------------TEEEEEET
T ss_pred ccCC--CCeEEEEcCCCCCeEEEEECCCCCceEEEEeccC--------------------------------CEEEEEEC
Confidence 4321 1223333322111111111122345566666553 24555555
Q ss_pred CCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecccc
Q 040062 314 QDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKEL 371 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l 371 (689)
..+.|..+|+........... ........+++. .+.++++-...+.|..++..+++.
T Consensus 184 ~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~ 241 (316)
T 1ijq_A 184 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSD 241 (316)
T ss_dssp TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCC
T ss_pred CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcc
Confidence 667899999875433222221 112346778885 344445555567888887655543
No 280
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.98 E-value=0.0061 Score=62.49 Aligned_cols=176 Identities=9% Similarity=-0.015 Sum_probs=104.6
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccC
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFG 105 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~ 105 (689)
+|+.+. ...|+.+++..... .....+. ......+++|++.+. ++.+-...+.|..++++.....
T Consensus 6 ~ll~~~-~~~I~~i~l~~~~~---------~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~---- 70 (318)
T 3sov_A 6 LLLYAN-RRDLRLVDATNGKE---------NATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESV---- 70 (318)
T ss_dssp EEEEEC-EEEEEEEETTCTTS---------CCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCC----
T ss_pred EEEEEc-cCeEEEEECCCCce---------EEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCce----
Confidence 344443 36789999875110 1111111 223567899998544 4445456688988988764210
Q ss_pred CCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEE
Q 040062 106 SGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIAS 184 (689)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las 184 (689)
.. .+...-.....+++.+.+. ++++-...+.|.++++........+........+|+++|.+.+|+.
T Consensus 71 ----------~~--~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~ 138 (318)
T 3sov_A 71 ----------QN--VVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYW 138 (318)
T ss_dssp ----------CE--EEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEE
T ss_pred ----------EE--EEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEE
Confidence 01 1111223466788887554 4455556779999998654433334344566789999997666666
Q ss_pred EeC--CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 185 QSD--DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 185 ~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+.. .+.|..++++........... ......++|++++..|+.+..
T Consensus 139 td~~~~~~I~r~~~dG~~~~~~~~~~------l~~Pnglavd~~~~~lY~aD~ 185 (318)
T 3sov_A 139 TDWGEVPKIERAGMDGSSRFIIINSE------IYWPNGLTLDYEEQKLYWADA 185 (318)
T ss_dssp EECSSSCEEEEEETTSCSCEEEECSS------CSCEEEEEEETTTTEEEEEET
T ss_pred EecCCCCEEEEEEcCCCCeEEEEECC------CCCccEEEEeccCCEEEEEEC
Confidence 552 578888887643322222211 223688999998888887754
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.94 E-value=0.0003 Score=81.46 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=72.1
Q ss_pred CEEEEEEc-CCCCEEEEEeC-CC----eEEEEEcCCC-eEEE-EEecCCCCeEEEEEccCCCEEEEEeCC-----CeEEE
Q 040062 127 DVVDLNWS-PDDSILASGSL-DN----TIHIWNMSTG-ICTA-VLRGHSSLVKGVAWDPIGSFIASQSDD-----KTVII 193 (689)
Q Consensus 127 ~V~~l~~s-pdg~~Lasgs~-Dg----~I~vwd~~~~-~~~~-~l~~h~~~V~~l~~spdg~~las~s~D-----g~I~i 193 (689)
.+...+|| |||++||.+.. +| .|+++|+.++ +.+. .+.. ....++|+|||+.|+....| ..|++
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 67889999 99998876543 22 5999999988 6321 1111 13467899999888777654 36888
Q ss_pred EECCCCcce--eeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeec
Q 040062 194 WRTSDWSLA--HRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLER 248 (689)
Q Consensus 194 wd~~~~~~~--~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~ 248 (689)
+++.+.... ..+... ...+...+.|||||++|+...... ....+.+++.
T Consensus 252 ~~lgt~~~~~~lv~~~~-----~~~~~~~~~~SpDg~~l~~~~~~~-~~~~l~~~d~ 302 (751)
T 2xe4_A 252 HVMGKLQSEDVCLYEEH-----NPLFSAFMYKAADTNTLCIGSQSP-ETAEVHLLDL 302 (751)
T ss_dssp EETTSCGGGCEEEEECC-----CTTCEEEEEECTTSSEEEEEEECS-SCEEEEEEES
T ss_pred EECCCCchhcEEEEecC-----CCceEEEEEECCCCCEEEEEecCC-CCceEEEEEC
Confidence 888775432 111111 112356789999999998775432 2333444444
No 282
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.92 E-value=0.0028 Score=68.02 Aligned_cols=154 Identities=12% Similarity=0.198 Sum_probs=97.3
Q ss_pred eEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC-C----
Q 040062 15 QIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD-Q---- 88 (689)
Q Consensus 15 ~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-g---- 88 (689)
.-..|+|+| ++..|.++...+.|+.+|++. ..+..+.........|+|+++|++|+.+... +
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~------------~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~ 205 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEK------------EYVSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRP 205 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTT------------TEEEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCC------------CEEEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccc
Confidence 357889998 455566665557899999875 2333343355668899999999966665542 2
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEEec-C
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVLRG-H 166 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-h 166 (689)
.+.+++.... . .....+. .......++++| ++.++++-..++.|..|+...+........ .
T Consensus 206 ~v~~~~~~g~-~---------------~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~ 268 (430)
T 3tc9_A 206 NNYILTRESG-F---------------KVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD 268 (430)
T ss_dssp EEEEEEGGGT-S---------------CSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred eEEEEeCCCc-e---------------eeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence 2333443221 0 1011111 123467788999 666666666778999999987765333322 2
Q ss_pred CCCeEEEEEccCCCEEEEE-eCCCeEEEEECC
Q 040062 167 SSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTS 197 (689)
Q Consensus 167 ~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~ 197 (689)
......|+|+|++++|+.+ ...+.|..++.+
T Consensus 269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 2456799999999955544 467789998765
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.84 E-value=0.0048 Score=66.21 Aligned_cols=154 Identities=13% Similarity=0.186 Sum_probs=93.2
Q ss_pred eEEEEEEcCC--CCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC---Ce
Q 040062 15 QIFSIDVQPG--ALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD---QV 89 (689)
Q Consensus 15 ~I~si~~spd--g~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D---g~ 89 (689)
.-..|+|+|+ ...|..+...+.|+.+|... +. +..+........+|+|+++|+++++.... ..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~-----------g~-v~~~~~~~~~P~giavd~dG~lyVad~~~~~~~~ 207 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVN-----------QY-VDIKTTNIGQCADVNFTLNGDMVVVDDQSSDTNT 207 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTT-----------TE-EEEECCCCSCEEEEEECTTCCEEEEECCSCTTSE
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCC-----------CE-EEEeecCCCCccEEEECCCCCEEEEcCCCCcccc
Confidence 3568999985 44455554448899999864 33 33343445568999999999954444321 12
Q ss_pred -EEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEEcCCCeEEEEE-ec-
Q 040062 90 -ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSP-DDSILASGSLDNTIHIWNMSTGICTAVL-RG- 165 (689)
Q Consensus 90 -I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp-dg~~Lasgs~Dg~I~vwd~~~~~~~~~l-~~- 165 (689)
+..++...+ +.....+. .-.....+++++ ++.++++-..++.|+.+|..++.....+ ..
T Consensus 208 gv~~~~~~~~----------------~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~ 270 (433)
T 4hw6_A 208 GIYLFTRASG----------------FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMD 270 (433)
T ss_dssp EEEEECGGGT----------------TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECS
T ss_pred eEEEEECCCC----------------eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccC
Confidence 333322211 01001111 234466788999 5665556556789999999877663322 21
Q ss_pred CCCCeEEEEEccCCCEEEEE-eCCCeEEEEECC
Q 040062 166 HSSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTS 197 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~ 197 (689)
....-..|+|+|++++|+.+ ...+.|+.++..
T Consensus 271 ~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 271 TKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp CCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 12233579999999955554 456789998865
No 284
>2i32_E Histone regulatory homolog A; histone deposition, chromatin regulation, histone chaperones, ASF1, HIRA, CAF-1, replication chaperone; 2.70A {Homo sapiens}
Probab=97.81 E-value=8e-06 Score=56.84 Aligned_cols=26 Identities=42% Similarity=0.558 Sum_probs=20.4
Q ss_pred CCCCcccceeEECCCCceeeceeecc
Q 040062 470 RISSPVKQREYRRPDGRKRIIPEAVG 495 (689)
Q Consensus 470 ~~~~~~~q~~~~~~dg~~r~~p~~~~ 495 (689)
++....||+|++++||||||+||+|.
T Consensus 27 ~~~~~~KQiEtrt~dGKrritp~~I~ 52 (57)
T 2i32_E 27 RKNLLKKQVETRTADGRRRITPLCIA 52 (57)
T ss_dssp ----CCSCEEEECTTSCEEEECEEC-
T ss_pred ccCccccceeecCCCCcccccceecC
Confidence 34567899999999999999999997
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.81 E-value=0.016 Score=61.48 Aligned_cols=233 Identities=9% Similarity=-0.073 Sum_probs=130.9
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCC-
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTG- 157 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~- 157 (689)
+|+.+. ...|+..+++... .. .+......+..|+|++.+..|+.+. ..+.|+.+++...
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~-----------------~~-~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~ 145 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSE-----------------YT-SLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAH 145 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCS-----------------CE-EEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC----
T ss_pred eeEEec-cceeEEEccCCcc-----------------ee-EeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCC
Confidence 444443 4678888887542 11 1223456789999998766665554 5678999998652
Q ss_pred ---eEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 158 ---ICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 158 ---~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.....+........+|++++.+ +++++-...+.|.+.+++.......+... ....+.+++.|.+.+|+.+
T Consensus 146 ~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~------~~~P~~iavdp~~g~ly~t 219 (400)
T 3p5b_L 146 GVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREN------GSKPRAIVVDPVHGFMYWT 219 (400)
T ss_dssp --CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECS------SCCEEEEEEETTTTEEEEE
T ss_pred CCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCC------CCCcceEEEecccCeEEEE
Confidence 2333344344567899999854 45555556788999998765443333222 1226889999977777665
Q ss_pred cCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEe
Q 040062 234 HGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGS 313 (689)
Q Consensus 234 ~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs 313 (689)
.... ...+...+.............-.....+++++.. +.++++-.
T Consensus 220 d~~~--~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~--------------------------------~~lY~aD~ 265 (400)
T 3p5b_L 220 DWGT--PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS--------------------------------GRLYWVDS 265 (400)
T ss_dssp ECSS--SCCEEEEETTSCSCEEEECSSCSCEEEEEEETTT--------------------------------TEEEEEET
T ss_pred eCCC--CCEEEEEeCCCCccEEEEECCCCceEEEEEEeCC--------------------------------CEEEEEEC
Confidence 4321 1223333322211111111222345667776553 24444545
Q ss_pred CCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 314 QDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 314 ~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
..+.|..+|+........... ........|++. .+.++++-...+.|..++..+++..
T Consensus 266 ~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~ 324 (400)
T 3p5b_L 266 KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV 324 (400)
T ss_dssp TTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred CCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence 567899999875544333322 112345677763 3344445555678888886555543
No 286
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=97.80 E-value=0.0055 Score=60.35 Aligned_cols=193 Identities=11% Similarity=0.111 Sum_probs=121.9
Q ss_pred ceEEEEEEcCCCCEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec-CCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR-DHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~-~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
..+..++|+|++..| ++...++.|...|.. ++.++.+. .-....-.|++.+++.++++.-.++.+.
T Consensus 27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~------------g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN------------GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp SCEEEEEEETTTTEEEEEEETTEEEEEEETT------------CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEE
T ss_pred cCcceeEEeCCCCEEEEEECCCCeEEEEeCC------------CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEE
Confidence 369999999987655 556778888888876 34555542 2224678889999998877776778899
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEE------ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC---CCeEEEE
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTL------RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS---TGICTAV 162 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l------~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~---~~~~~~~ 162 (689)
++++...... ..+... ..+......|+|+|+++.|+++.......+|.+. ....+..
T Consensus 95 ~~~v~~~~~i--------------~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i 160 (255)
T 3qqz_A 95 VISLTPNSEV--------------KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHI 160 (255)
T ss_dssp EEEECTTCCE--------------EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEE
T ss_pred EEEcCCCCee--------------eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceee
Confidence 9988765311 111111 1234567999999998877777765555555543 1111222
Q ss_pred Ee-------cCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCCcceeeccCccc---ccCCcccEEEEEEcCCCCeEE
Q 040062 163 LR-------GHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDWSLAHRTDGHWA---KSLGSTFFRRLGWSPCGHFIT 231 (689)
Q Consensus 163 l~-------~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~---~~~~~~~i~~l~~spdg~~l~ 231 (689)
+. .+...+.+++++|.. .+++.....+.|.++|.. ++.+..+..... ..........++|.++|+..+
T Consensus 161 ~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyI 239 (255)
T 3qqz_A 161 SKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYI 239 (255)
T ss_dssp EECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEE
T ss_pred ecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEE
Confidence 21 123457899999965 455566677788999975 445444433211 011123468899999998555
Q ss_pred Ee
Q 040062 232 TT 233 (689)
Q Consensus 232 ~~ 233 (689)
++
T Consensus 240 vs 241 (255)
T 3qqz_A 240 VS 241 (255)
T ss_dssp EE
T ss_pred Ec
Confidence 53
No 287
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.79 E-value=0.023 Score=65.49 Aligned_cols=186 Identities=10% Similarity=0.021 Sum_probs=110.5
Q ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEEc
Q 040062 17 FSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVILIHEK 95 (689)
Q Consensus 17 ~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~iwdl 95 (689)
.|.++.+.. +|+.... ..|+..++.. .. ...+......+..|+|++... ++++-...+.|+.+++
T Consensus 388 ~C~~~~~~p-~Ll~an~-~~Ir~i~l~~-----------~~-~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l 453 (791)
T 3m0c_C 388 ACKAVGSIA-YLFFTNR-HEVRKMTLDR-----------SE-YTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQL 453 (791)
T ss_dssp CCEETTSCC-EEEEECB-SSEEEECTTS-----------CC-CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred eeeeccccc-ccccccc-cceeEeeccC-----------Cc-ceeeecCCCceEEEeecccCCeeEEeeccceeEEEEec
Confidence 344443332 4444433 5678777764 22 222333456688999998554 4455555678888888
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEE
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVA 174 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 174 (689)
....... .....+.........|++.+.+..|+ +-...+.|.+.++........+........+|+
T Consensus 454 ~g~~~~~-------------~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIa 520 (791)
T 3m0c_C 454 DRAHGVS-------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIV 520 (791)
T ss_dssp ---------------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEE
T ss_pred cCCCCCc-------------ceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEE
Confidence 7531000 11222332345567888887775454 445678999999976554444444556689999
Q ss_pred EccCCCEEEEEeC-C-CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 175 WDPIGSFIASQSD-D-KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 175 ~spdg~~las~s~-D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
++|.+.+|+.+.. + +.|...++........+... ......|++++.+..|+.+..
T Consensus 521 VDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~------l~~P~GLavD~~~~~LYwaD~ 577 (791)
T 3m0c_C 521 VDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTEN------IQWPNGITLDLLSGRLYWVDS 577 (791)
T ss_dssp EETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSS------CSCEEEEEEETTTTEEEEEET
T ss_pred EecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCC------CCCceEEEEecCCCeEEEEeC
Confidence 9998666666553 2 67888888654433333222 234788999988888877754
No 288
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.74 E-value=0.036 Score=57.60 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=62.2
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE---ecCCCCEEEEEEcCC---CCE
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL---RGHTADVVDLNWSPD---DSI 139 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~l~~spd---g~~ 139 (689)
-.....|+|.|+|+++++ ..+|.|.+++. .+. +.+..+ .........|+|+|+ +..
T Consensus 28 l~~P~~ia~~pdG~l~V~-e~~g~I~~~d~-~G~----------------~~~~~~~v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVT-ERPGRLVLISP-SGK----------------KLVASFDVANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp CSCEEEEEEEETTEEEEE-ETTTEEEEECS-SCE----------------EEEEECCCCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCCeEEEEcCCCeEEEE-eCCCEEEEEeC-CCc----------------eEeeccceeecCCCceeeEEeCCCCCcCCE
Confidence 345789999999985555 55699988863 221 111111 122356899999998 555
Q ss_pred EEEEeC----C----CeEEEEEcCCC-------eEE-EEEec-CCCCeEEEEEccCCCEEEEEe
Q 040062 140 LASGSL----D----NTIHIWNMSTG-------ICT-AVLRG-HSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 140 Lasgs~----D----g~I~vwd~~~~-------~~~-~~l~~-h~~~V~~l~~spdg~~las~s 186 (689)
|+++.. + +.|..|+.... +.+ ..+.. .......|+|.|||.++++.+
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 555443 3 67888887653 111 11221 112346799999998777654
No 289
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.72 E-value=0.023 Score=59.01 Aligned_cols=102 Identities=10% Similarity=0.071 Sum_probs=62.6
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE---ecCCCCEEEEEEcCC---CCEE
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL---RGHTADVVDLNWSPD---DSIL 140 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~l~~spd---g~~L 140 (689)
..-..|+|.|+|+++++ ..++.|.+++ .+.. ..+..+ .........|+|+|+ +..|
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~---------------~~~~~~~v~~~g~~~p~gia~~pdf~~~g~l 92 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL---------------STYAELSVYHRGESGLLGLALHPRFPQEPYV 92 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE---------------EEEEECCCCCSTTCSEEEEEECTTTTTSCEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc---------------cEeecceEeecCCCCceeEEECCCCCCCCEE
Confidence 34679999999996555 5669999988 3310 112211 122456899999998 5555
Q ss_pred EEEeC-C-----CeEEEEEcCCCe-----EE-EEEe---cCCCCeEEEEEccCCCEEEEEe
Q 040062 141 ASGSL-D-----NTIHIWNMSTGI-----CT-AVLR---GHSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 141 asgs~-D-----g~I~vwd~~~~~-----~~-~~l~---~h~~~V~~l~~spdg~~las~s 186 (689)
+++.. . +.|..|+...+. .+ ..+. ........|+|.|||.++++.+
T Consensus 93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 55443 2 678888876431 12 2233 1112346899999997766644
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.65 E-value=0.01 Score=64.21 Aligned_cols=145 Identities=9% Similarity=0.073 Sum_probs=86.2
Q ss_pred cEEEEEEcC-CCCEEEEEeC-CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC----CCCEEEEEE-------c
Q 040062 68 SVNCVRWAK-HGRYIASGSD-DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH----TADVVDLNW-------S 134 (689)
Q Consensus 68 ~V~~v~fsp-dg~~Lasgs~-Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~V~~l~~-------s 134 (689)
....|+|+| +...|..+.. .+.|++.|+..+ .+..+..- ......|+| +
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~------------------~v~~l~~~~~~~~~~p~~ia~~~~~~~~d 201 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNR------------------MLSSPLNINTIPTNRIRSIAFNKKIEGYA 201 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTT------------------EEEEEECCTTSSCSBEEEEEECCCBTTTB
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCC------------------EEEEEEccCccccCCCcEEEEeecccccC
Confidence 367899998 3444544443 467888888775 23333221 235899999 9
Q ss_pred CCCCEEEEEeCCC-------eEEEEEcCC-CeEE-----EEEecCCCCeEEEEEccC-CCEEEEEeCCCeEEEEECC---
Q 040062 135 PDDSILASGSLDN-------TIHIWNMST-GICT-----AVLRGHSSLVKGVAWDPI-GSFIASQSDDKTVIIWRTS--- 197 (689)
Q Consensus 135 pdg~~Lasgs~Dg-------~I~vwd~~~-~~~~-----~~l~~h~~~V~~l~~spd-g~~las~s~Dg~I~iwd~~--- 197 (689)
+++.+|+++...+ .|.+++... +... ..+... ....+++++|+ +.++++-..++.|..+|+.
T Consensus 202 ~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~ 280 (496)
T 3kya_A 202 DEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYF 280 (496)
T ss_dssp CTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHH
T ss_pred CCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEeccccc
Confidence 9999777666544 366675433 1211 122211 23457889995 4555566678889999987
Q ss_pred ----CCcc-----------eeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 198 ----DWSL-----------AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 198 ----~~~~-----------~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
++.. ...+. ..........++|+|+|++|+.+..
T Consensus 281 ~~~~tg~~~tp~~~~~~g~~~~l~----~~~~~~~p~~ia~~p~G~~lYvaD~ 329 (496)
T 3kya_A 281 KTIKNGGSWDPIVKNNPNTFKQLF----TIADPSWEFQIFIHPTGKYAYFGVI 329 (496)
T ss_dssp HHHHTTCCCCCBGGGCTTTEEEEE----ECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ccccCceeecccccccccccceeE----ecCCCCCceEEEEcCCCCEEEEEeC
Confidence 4443 01110 0111223578999999997766643
No 291
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.63 E-value=0.14 Score=57.34 Aligned_cols=160 Identities=6% Similarity=-0.041 Sum_probs=99.5
Q ss_pred ceEEEEEEcCCCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCC-EEEEEeCCCeEE
Q 040062 14 MQIFSIDVQPGALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGR-YIASGSDDQVIL 91 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~-~Lasgs~Dg~I~ 91 (689)
.....|+|++.+.+|..+. ..+.|..+++... ......+.........+++.+.+. +.++-...+.|.
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~----------~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~ 109 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKT----------ESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 109 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCC----------CceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEE
Confidence 3578899998776666554 4678888887641 111222333335688999998555 444555678999
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC--CCeEEEEEcCCCeEEEEEecCCCC
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL--DNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~--Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
+.+++... ....+...-.....|++.|.+.+|+.... .+.|...++............-..
T Consensus 110 v~~~dG~~-----------------~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~ 172 (619)
T 3s94_A 110 VSNLDGSL-----------------RKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYW 172 (619)
T ss_dssp EEETTSCS-----------------CEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSS
T ss_pred EEECCCCC-----------------EEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCC
Confidence 99987642 11112233445778999987666665553 357777777543333333334456
Q ss_pred eEEEEEccCCCEEEEEe-CCCeEEEEECCCCc
Q 040062 170 VKGVAWDPIGSFIASQS-DDKTVIIWRTSDWS 200 (689)
Q Consensus 170 V~~l~~spdg~~las~s-~Dg~I~iwd~~~~~ 200 (689)
..+|+++++++.|..+. ..+.|..+|+....
T Consensus 173 P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~ 204 (619)
T 3s94_A 173 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN 204 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEESSSCCE
T ss_pred CcEEEEEccCCEEEEEeCCCCeEEEecCCCCc
Confidence 78999999776666554 55678888886533
No 292
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.57 E-value=0.034 Score=57.05 Aligned_cols=187 Identities=13% Similarity=0.088 Sum_probs=102.9
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEE
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIH 93 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iw 93 (689)
..+.+|.|++ +..+++ +.++.|+. ..+... ..+.+.....+.+.+..+.+.+++..++.+ .++.| |
T Consensus 80 ~~~~~i~~~~-~~~~~~-g~~g~i~~--S~DgG~-------tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v--~ 145 (327)
T 2xbg_A 80 YRFNSVSFQG-NEGWIV-GEPPIMLH--TTDGGQ-------SWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAI--Y 145 (327)
T ss_dssp CEEEEEEEET-TEEEEE-EETTEEEE--ESSTTS-------SCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCE--E
T ss_pred ccEEEEEecC-CeEEEE-ECCCeEEE--ECCCCC-------CceECccccCCCCCeEEEEEECCCCEEEEe-CCccE--E
Confidence 4789999986 444444 45564443 222111 122222222234557888887777766665 45543 3
Q ss_pred EcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEc--CCCeEEEEEecCCCCeE
Q 040062 94 EKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNM--STGICTAVLRGHSSLVK 171 (689)
Q Consensus 94 dl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~--~~~~~~~~l~~h~~~V~ 171 (689)
....+ -..|+.+. ..+...+..+++.+++.+++++...+..+-+|- .+.+.+. ......+.
T Consensus 146 ~S~Dg-------------G~tW~~~~--~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~ 208 (327)
T 2xbg_A 146 RTKDS-------------GKNWQALV--QEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN--RTTSRRLH 208 (327)
T ss_dssp EESST-------------TSSEEEEE--CSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE--CCSSSCEE
T ss_pred EEcCC-------------CCCCEEee--cCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC--CCCCCccc
Confidence 22221 13455543 345567899999998887766644333334442 3334432 33556788
Q ss_pred EEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 172 GVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 172 ~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
.+.+++++.+++ .+.+|.+++++.+.++.-..+.... ......+..+.+.+++..++++.
T Consensus 209 ~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~~~~~~--~~~~~~~~~v~~~~~~~~~~~g~ 268 (327)
T 2xbg_A 209 NMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGELLSPL--RRNSVGFLDLAYRTPNEVWLAGG 268 (327)
T ss_dssp EEEECTTSCEEE-EETTTEEEEEETTEEEEECCCBCTT--SSCCSCEEEEEESSSSCEEEEES
T ss_pred eeEECCCCCEEE-EeCCceEEEecCCCCCeeEeccCCc--ccCCcceEEEEecCCCEEEEEeC
Confidence 999999887664 4567888776533222222221110 01112377888998887777653
No 293
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=97.54 E-value=0.13 Score=61.93 Aligned_cols=190 Identities=13% Similarity=0.043 Sum_probs=98.1
Q ss_pred ceEEEEEEcCC------CCEEEEEeC-CCeEEEEeCCcCCCCCCCCcccceeeeeecC--CCCcEEEEEEcCCCCEEEEE
Q 040062 14 MQIFSIDVQPG------ALRFATGGG-DHKVRIWNMKSVGKNFENDESTQRLLATLRD--HFGSVNCVRWAKHGRYIASG 84 (689)
Q Consensus 14 ~~I~si~~spd------g~~Latgs~-Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~fspdg~~Lasg 84 (689)
..|.|+++.|. ++++|+|.. |++|+|+++.... ......+.. -...|.-+.+ ....||..|
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~---------~~~~~~L~~~~~p~si~l~~~-~~~~~L~ig 623 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE---------LLHKEMLGGEIIPRSILMTTF-ESSHYLLCA 623 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC---------EEEEEECCSSCCEEEEEEEEE-TTEEEEEEE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC---------eEEEEECCCCCCCcEEEEEEe-CCCcEEEEE
Confidence 47999999864 379999997 9999999997511 111112211 1122333333 234588999
Q ss_pred eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 85 SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 85 s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
-.||.+..+.++...+.. . .....+-+ ..++.-..|...+..-+.+..+....+|.-. +..... .
T Consensus 624 l~dG~l~~~~~d~~tg~l----------~--d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s-~ 688 (1158)
T 3ei3_A 624 LGDGALFYFGLNIETGLL----------S--DRKKVTLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFS-N 688 (1158)
T ss_dssp ETTSEEEEEEECTTTCCE----------E--EEEEEECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEE-E
T ss_pred eCCCeEEEEEEcCCCCcc----------c--cceeEEcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEe-c
Confidence 999998877765421100 0 11112222 3455544454444433333334444445433 222211 1
Q ss_pred cCCCCe-EEEEEccC--CCEEEEEeCCCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 165 GHSSLV-KGVAWDPI--GSFIASQSDDKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 165 ~h~~~V-~~l~~spd--g~~las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
-....+ ....|+.. .+-++..+ ++.++|..+.+...... ....-...+++++++|+.+.++...
T Consensus 689 l~~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~~~~-----~~ipL~~Tprri~y~~~~~~~~v~~ 755 (1158)
T 3ei3_A 689 VNLKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQKLHI-----RTVPLYESPRKICYQEVSQCFGVLS 755 (1158)
T ss_dssp BSSSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSSEEE-----EEEECSSEEEEEEEEGGGTEEEEEE
T ss_pred cChHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCCeeE-----EEEeCCCCceEEEEcCCCCEEEEEE
Confidence 111223 23345432 23455444 45699998865432211 1111223478999999887766543
No 294
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.53 E-value=0.0044 Score=62.96 Aligned_cols=157 Identities=9% Similarity=0.048 Sum_probs=105.1
Q ss_pred EEEEEcCCCCEEEEEe-CCCeEEEEeCCcCCCCCCCCcccceeeeeecC----CC--CcEEEEEE---cCCCCEEEEEe-
Q 040062 17 FSIDVQPGALRFATGG-GDHKVRIWNMKSVGKNFENDESTQRLLATLRD----HF--GSVNCVRW---AKHGRYIASGS- 85 (689)
Q Consensus 17 ~si~~spdg~~Latgs-~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~----h~--~~V~~v~f---spdg~~Lasgs- 85 (689)
-+++|++...+|..++ ..+.|..|+.... ....+ .+.+ .. ..+..|.| .|+++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~---------~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~ 85 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQ---------SHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKN 85 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTC---------CEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEE
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCC---------eEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcc
Confidence 3678988666777666 6899999998641 01112 2322 11 14689999 68887777543
Q ss_pred ------------CCCeEEEEEcC---CCCCccccCCCCCCCcccceEEEEEecC-----------CCCEEEEEEcCCCCE
Q 040062 86 ------------DDQVILIHEKK---PGSGTTEFGSGEPPDIENWKVAMTLRGH-----------TADVVDLNWSPDDSI 139 (689)
Q Consensus 86 ------------~Dg~I~iwdl~---~~~~~~~~~~~~~~~~~~~~~~~~l~~h-----------~~~V~~l~~spdg~~ 139 (689)
.+..|..||+. ++... ....+... ...+.+++..++|+.
T Consensus 86 ~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~---------------~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna 150 (334)
T 2p9w_A 86 AKSFNFADQSSHGASSFHSFNLPLSENSKPV---------------WSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS 150 (334)
T ss_dssp TTTTCTTSCCSSSCCEEEEEESSCCTTCCCS---------------EEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE
T ss_pred cccccccccccCCCCEEEEEcCCcCCCCCEE---------------EEecCccccccccccccccccCCceeEECCCCCE
Confidence 16779999998 55321 11122111 124889999999999
Q ss_pred EEEEeCC-CeEEEEEcCCCeEEEEEecC-----CCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 140 LASGSLD-NTIHIWNMSTGICTAVLRGH-----SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 140 Lasgs~D-g~I~vwd~~~~~~~~~l~~h-----~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.++++.. +.|...+.........+... .....+|+++|+|+.|++...+|.|..+|+.+
T Consensus 151 YVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 151 YVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp EEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred EEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 9999888 88888887544232222111 12366999999999998887799999999873
No 295
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.50 E-value=0.058 Score=55.98 Aligned_cols=60 Identities=15% Similarity=0.143 Sum_probs=37.1
Q ss_pred CCcEEEEEeCCCcEEEEeCCCCCceEE--ecccCCCCeEEEEEccCCCeEEEEe-CCCcEEEEEe
Q 040062 305 PYNVIAIGSQDRTITVWTTASPRPLFV--AKHFFTQSVVDLSWSPDGYSLFACS-LDGTVANFHF 366 (689)
Q Consensus 305 ~~~~lasgs~Dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~spdg~~L~sgs-~DG~I~vwd~ 366 (689)
++.++++.-..+.|...++..++.... +.......+.++++.|||.++++.. .+| +||.+
T Consensus 288 ~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 288 QQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTE--EEEEE
T ss_pred CCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCC--EEEEE
Confidence 456777766778888888775543322 2112234799999999998555433 344 45554
No 296
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.47 E-value=0.033 Score=56.95 Aligned_cols=204 Identities=8% Similarity=-0.093 Sum_probs=113.8
Q ss_pred CEEEEEEcCCCCEEEEE-eCCCeEEEEEcCCCeE-EEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCCCccee
Q 040062 127 DVVDLNWSPDDSILASG-SLDNTIHIWNMSTGIC-TAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSDWSLAH 203 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasg-s~Dg~I~vwd~~~~~~-~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~~~~~~ 203 (689)
....++|.+.+..|+.+ ...+.|..+++..... ...+...-....++++++.+. ++++-...+.|.+++++......
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~ 115 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKV 115 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEE
Confidence 46789999865555444 4667899999876532 122222234567899997554 55555567899999986543322
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccc
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQE 283 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~ 283 (689)
.+... ......+++.|.+..|+.+.... ...+...+.............-..-..++++++.
T Consensus 116 l~~~~------~~~P~giavdp~~g~ly~td~~~--~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~---------- 177 (318)
T 3sov_A 116 LFWQE------LDQPRAIALDPSSGFMYWTDWGE--VPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEE---------- 177 (318)
T ss_dssp EECSS------CSSEEEEEEEGGGTEEEEEECSS--SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTT----------
T ss_pred EEeCC------CCCccEEEEeCCCCEEEEEecCC--CCEEEEEEcCCCCeEEEEECCCCCccEEEEeccC----------
Confidence 22221 12367889998766666654211 1223333322111111111112334566776643
Q ss_pred cccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEE
Q 040062 284 VKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVAN 363 (689)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~v 363 (689)
+.++++-...+.|..+|+.......... ........+++.. +.++.+-...+.|..
T Consensus 178 ----------------------~~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~glav~~-~~lywtd~~~~~V~~ 233 (318)
T 3sov_A 178 ----------------------QKLYWADAKLNFIHKSNLDGTNRQAVVK-GSLPHPFALTLFE-DILYWTDWSTHSILA 233 (318)
T ss_dssp ----------------------TEEEEEETTTTEEEEEETTSCSCEEEEC-SCCSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred ----------------------CEEEEEECCCCEEEEEcCCCCceEEEec-CCCCCceEEEEeC-CEEEEEecCCCeEEE
Confidence 2455555566889999987543333222 2244567788753 344444445678888
Q ss_pred EEeeccccc
Q 040062 364 FHFEVKELG 372 (689)
Q Consensus 364 wd~~~~~l~ 372 (689)
++..+++..
T Consensus 234 ~~~~~G~~~ 242 (318)
T 3sov_A 234 CNKYTGEGL 242 (318)
T ss_dssp EETTTCCSC
T ss_pred EECCCCCce
Confidence 887666543
No 297
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=97.47 E-value=0.11 Score=58.43 Aligned_cols=160 Identities=9% Similarity=-0.040 Sum_probs=94.1
Q ss_pred eEEEEEEcCCCCEEEEE-eCCCeEEEEeCCcCCCCCCCCcccceeeeee-cCCCCcEEEEEEcCCCCEEEEEeC--CCeE
Q 040062 15 QIFSIDVQPGALRFATG-GGDHKVRIWNMKSVGKNFENDESTQRLLATL-RDHFGSVNCVRWAKHGRYIASGSD--DQVI 90 (689)
Q Consensus 15 ~I~si~~spdg~~Latg-s~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fspdg~~Lasgs~--Dg~I 90 (689)
....|++++.+..|+.+ ...+.|.+.++.. .....+ .........|++.|.+.+|..+.. .+.|
T Consensus 85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG------------~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I 152 (619)
T 3s94_A 85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDG------------SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKI 152 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTS------------CSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEE
T ss_pred CcCeEEEEecCCEEEEEeCCCCEEEEEECCC------------CCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEE
Confidence 57789999866555544 4578899999874 222222 133345678999997666655543 3566
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
...+++... ........-.....|++++++..|+.+. ..+.|..+|+........+.+....
T Consensus 153 ~r~~~dG~~-----------------~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~ 215 (619)
T 3s94_A 153 ERAGMDGSS-----------------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPH 215 (619)
T ss_dssp EEEETTSCS-----------------CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------
T ss_pred EEEECCCCc-----------------eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCC
Confidence 666665431 1112222345678999999877666654 4568999988654333333222233
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceee
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHR 204 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~ 204 (689)
..+|++..+ ..+++-...+.|...|..+++....
T Consensus 216 P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~~ 249 (619)
T 3s94_A 216 PFALTLFED-ILYWTDWSTHSILACNKYTGEGLRE 249 (619)
T ss_dssp CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCEE
T ss_pred ceEEEEeCC-EEEEecCCCCEEEEEECCCCcccEE
Confidence 457787755 4444444667899999877655443
No 298
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=97.46 E-value=0.11 Score=55.89 Aligned_cols=107 Identities=11% Similarity=0.178 Sum_probs=63.7
Q ss_pred CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCC---
Q 040062 66 FGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPD--- 136 (689)
Q Consensus 66 ~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spd--- 136 (689)
-.....|+|.|+|+++++-...+.|++++..++.. ..+..+.. .......|+|+||
T Consensus 26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~---------------~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~ 90 (454)
T 1cru_A 26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSV---------------KTVFQVPEIVNDADGQNGLLGFAFHPDFKN 90 (454)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------EEEEECTTCCCCTTSSCSEEEEEECTTTTT
T ss_pred CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcE---------------eEEecCCccccccCCCCceeEEEECCCcCc
Confidence 34567999999999777755445788887544321 12222211 2456889999996
Q ss_pred CCEEEEEeC-------------CCeEEEEEcCCC-------eEEE-EEec-CCCCeEEEEEccCCCEEEEEeC
Q 040062 137 DSILASGSL-------------DNTIHIWNMSTG-------ICTA-VLRG-HSSLVKGVAWDPIGSFIASQSD 187 (689)
Q Consensus 137 g~~Lasgs~-------------Dg~I~vwd~~~~-------~~~~-~l~~-h~~~V~~l~~spdg~~las~s~ 187 (689)
+..|..+.. ...|.-|+.... +.+. .+.. .......|+|.|||.++++.++
T Consensus 91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 555544432 235666665331 1121 1221 1234689999999987777654
No 299
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.41 E-value=0.062 Score=61.92 Aligned_cols=206 Identities=12% Similarity=-0.067 Sum_probs=113.9
Q ss_pred CCCCEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCC----eEEEEEecCCCCeEEEEEccCCCEEE-EEeCCCeEEEEECC
Q 040062 124 HTADVVDLNWSPDDSILA-SGSLDNTIHIWNMSTG----ICTAVLRGHSSLVKGVAWDPIGSFIA-SQSDDKTVIIWRTS 197 (689)
Q Consensus 124 h~~~V~~l~~spdg~~La-sgs~Dg~I~vwd~~~~----~~~~~l~~h~~~V~~l~~spdg~~la-s~s~Dg~I~iwd~~ 197 (689)
....+..|+|.+....|+ +-...+.|+.+++... .....+........+|++++.++.|+ +-...+.|.+.++.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 456688999998655554 4445678999998652 23334443445677899998775544 55567899999997
Q ss_pred CCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccc
Q 040062 198 DWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRN 277 (689)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~ 277 (689)
.......+... ....+.|++.|.+.+|+.+..... ..+...+.........+...-.....|++.+..
T Consensus 502 G~~~~~l~~~~------l~~P~gIaVDp~~g~LYwtD~g~~--~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~---- 569 (791)
T 3m0c_C 502 GVKRKTLFREN------GSKPRAIVVDPVHGFMYWTDWGTP--AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS---- 569 (791)
T ss_dssp SSSEEEEEECT------TCCEEEEEEETTTTEEEEEECSSS--CEEEEEETTSCCEEEEECSSCSCEEEEEEETTT----
T ss_pred CCeEEEEEeCC------CCCcceEEEecCCCCEEEecCCCC--CeEEEEecCCCceEEEEeCCCCCceEEEEecCC----
Confidence 54433333222 123688999998777766542211 223333332222211122222345556665442
Q ss_pred cccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEe
Q 040062 278 SASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACS 356 (689)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs 356 (689)
+.++++-...+.|..+++........+.. ..-.....|++. +.+|+.+.
T Consensus 570 ----------------------------~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD 619 (791)
T 3m0c_C 570 ----------------------------GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTD 619 (791)
T ss_dssp ----------------------------TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEE
T ss_pred ----------------------------CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEE
Confidence 24444445567788888865544443332 112234566663 34555554
Q ss_pred -CCCcEEEEEeecccc
Q 040062 357 -LDGTVANFHFEVKEL 371 (689)
Q Consensus 357 -~DG~I~vwd~~~~~l 371 (689)
..+.|...+..+++.
T Consensus 620 ~~~~~I~~~dk~tG~~ 635 (791)
T 3m0c_C 620 IINEAIFSANRLTGSD 635 (791)
T ss_dssp TTTTEEEEEETTTCCC
T ss_pred CCCCEEEEEeCCCCcc
Confidence 456777777555543
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.40 E-value=0.033 Score=57.07 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=97.6
Q ss_pred EEEEcC---CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCC----CC---E-EEEEeC
Q 040062 18 SIDVQP---GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKH----GR---Y-IASGSD 86 (689)
Q Consensus 18 si~~sp---dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspd----g~---~-Lasgs~ 86 (689)
++-++| ...+++.....+-+.+||+. ++.+..+.. +.++.|..-|+ |+ + +++.-.
T Consensus 30 avw~~~~dp~~s~ii~t~k~~gL~Vydl~------------G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~ 95 (355)
T 3amr_A 30 AIWLDPKTPQNSKLITTNKKSGLVVYSLD------------GKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRS 95 (355)
T ss_dssp EEECCSSCGGGCEEEEEETTTEEEEEETT------------SCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECS
T ss_pred cEecCCCCCCccEEEEEcCCCCEEEEcCC------------CcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCC
Confidence 344445 33566666677899999995 688888754 56777777663 32 2 233333
Q ss_pred --CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEe------cCC-CCEEEEEE--cCC-CC-EEEEEeCCCeEEEEE
Q 040062 87 --DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLR------GHT-ADVVDLNW--SPD-DS-ILASGSLDNTIHIWN 153 (689)
Q Consensus 87 --Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~------~h~-~~V~~l~~--spd-g~-~Lasgs~Dg~I~vwd 153 (689)
+.+|++|+++.... .+..+. ... ..+..+|+ ++. +. ++++...+|.+..|+
T Consensus 96 ~~~n~l~vf~iDp~~~----------------~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~ 159 (355)
T 3amr_A 96 EGKNTIEIYAIDGKNG----------------TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYE 159 (355)
T ss_dssp TTCCEEEEEEECTTTC----------------CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEE
T ss_pred CCCCeEEEEEECCCCC----------------ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEE
Confidence 57899998854321 111110 011 45666777 664 44 688888999999998
Q ss_pred cC-------CCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 154 MS-------TGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 154 ~~-------~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
+. +.+.++.+.. .+.+..+..++...+|+.+-+|.-|..|+.
T Consensus 160 l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da 208 (355)
T 3amr_A 160 LKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEAIWKFSA 208 (355)
T ss_dssp EEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTEEEEEEC
T ss_pred EEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccceEEEEeC
Confidence 83 3466777763 467889999999999999999866555554
No 301
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=97.40 E-value=0.16 Score=52.28 Aligned_cols=113 Identities=17% Similarity=0.110 Sum_probs=68.3
Q ss_pred eeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEE----ecCCCCEEEEEEc
Q 040062 59 LATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTL----RGHTADVVDLNWS 134 (689)
Q Consensus 59 ~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l----~~h~~~V~~l~~s 134 (689)
+..+...-..-..|+|.|+|++|++--..|.|++++...+.. ..+..+ .........|+|+
T Consensus 24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~---------------~~v~~~~~v~~~g~~GllGia~~ 88 (347)
T 3das_A 24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK---------------TELGEVPGVSPSGEGGLLGIALS 88 (347)
T ss_dssp EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE---------------EEEEECTTCCCBTTBSEEEEEEC
T ss_pred eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE---------------eeecccCceeecCCCCceeeEec
Confidence 334444445678999999999887766589999887654421 112211 2235678999999
Q ss_pred CC---CCEEEEE---eCCCeEEEEEcCC----------CeEEE-EEec-CCCCeEEEEEccCCCEEEEEe
Q 040062 135 PD---DSILASG---SLDNTIHIWNMST----------GICTA-VLRG-HSSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 135 pd---g~~Lasg---s~Dg~I~vwd~~~----------~~~~~-~l~~-h~~~V~~l~~spdg~~las~s 186 (689)
|+ +..|... ..++.|.-|.... .+.+. .+.. ....-..|.|.|||.++++.+
T Consensus 89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 96 3444443 2455677776644 12222 2321 112345799999998777755
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.37 E-value=0.019 Score=58.79 Aligned_cols=188 Identities=14% Similarity=0.204 Sum_probs=110.2
Q ss_pred CCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC----CC---EEEEEe-C--C
Q 040062 77 HGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD----DS---ILASGS-L--D 146 (689)
Q Consensus 77 dg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd----g~---~Lasgs-~--D 146 (689)
...+++....++-+.+||+ .+ +.+..+.. ..+..+..-|+ ++ ++++.. . +
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G-----------------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~ 98 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DG-----------------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGK 98 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TS-----------------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTC
T ss_pred CccEEEEEcCCCCEEEEcC-CC-----------------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCC
Confidence 3456666677788999999 45 45555542 34555554442 22 223333 3 5
Q ss_pred CeEEEEEc--CCCeEEEEEec------CC-CCeEEEEE--ccC-CC-EEEEEeCCCeEEEEECCC---CcceeeccCccc
Q 040062 147 NTIHIWNM--STGICTAVLRG------HS-SLVKGVAW--DPI-GS-FIASQSDDKTVIIWRTSD---WSLAHRTDGHWA 210 (689)
Q Consensus 147 g~I~vwd~--~~~~~~~~l~~------h~-~~V~~l~~--spd-g~-~las~s~Dg~I~iwd~~~---~~~~~~~~~~~~ 210 (689)
++|.+|++ .+++ +..+.. .. ..+.++|+ +|. ++ ++++...+|.+..|++.. +....++
T Consensus 99 n~l~vf~iDp~~~~-l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~l----- 172 (355)
T 3amr_A 99 NTIEIYAIDGKNGT-LQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKK----- 172 (355)
T ss_dssp CEEEEEEECTTTCC-EEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEE-----
T ss_pred CeEEEEEECCCCCc-eeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceE-----
Confidence 79999977 3443 444421 12 56677888 674 44 678888889999998732 1111110
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVG 290 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~ 290 (689)
++.+ .+ .+.+..|...+..
T Consensus 173 -------VR~f----------------------------------~l---gsq~EgcvvDd~~----------------- 191 (355)
T 3amr_A 173 -------VRAF----------------------------------KM---NSQTEGMAADDEY----------------- 191 (355)
T ss_dssp -------EEEE----------------------------------EC---SSCEEEEEEETTT-----------------
T ss_pred -------EEEe----------------------------------cC---CCCcceEEEcCCC-----------------
Confidence 1111 11 2345566666553
Q ss_pred ccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC-----CCCceEEecccC-CCCeEEEEE--ccCCC-eEEEEe-CCCc
Q 040062 291 WTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA-----SPRPLFVAKHFF-TQSVVDLSW--SPDGY-SLFACS-LDGT 360 (689)
Q Consensus 291 ~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~-----~~~~~~~~~~~h-~~~V~~l~~--spdg~-~L~sgs-~DG~ 360 (689)
..|+.+-++.-|..|+.+ +++.+..+...+ ...+..|++ .++++ ||++++ .+.+
T Consensus 192 ----------------g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 192 ----------------GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp ----------------TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred ----------------CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 688888888767777755 233343332222 246788887 55666 677666 5779
Q ss_pred EEEEEee
Q 040062 361 VANFHFE 367 (689)
Q Consensus 361 I~vwd~~ 367 (689)
+.+||.+
T Consensus 256 ~~Vydr~ 262 (355)
T 3amr_A 256 YAIYDRQ 262 (355)
T ss_dssp EEEEESS
T ss_pred EEEEECC
Confidence 9999986
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.35 E-value=0.066 Score=55.49 Aligned_cols=106 Identities=19% Similarity=0.187 Sum_probs=61.1
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEE--EEEe---cCCCCeEEEEEccC---CCEEEEEeC-C-----Ce
Q 040062 125 TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICT--AVLR---GHSSLVKGVAWDPI---GSFIASQSD-D-----KT 190 (689)
Q Consensus 125 ~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~--~~l~---~h~~~V~~l~~spd---g~~las~s~-D-----g~ 190 (689)
-.....|+|.|||++++ +..++.|++++ +++.. ..+. ........|+|+|+ +.+|..+.. + ..
T Consensus 30 l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~ 106 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ 106 (352)
T ss_dssp CSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred CCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence 34578999999998554 46679999998 44422 2111 12356889999998 555544433 2 57
Q ss_pred EEEEECCCCcce--eeccCcccc-cCCcccEEEEEEcCCCCeEEEe
Q 040062 191 VIIWRTSDWSLA--HRTDGHWAK-SLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 191 I~iwd~~~~~~~--~~~~~~~~~-~~~~~~i~~l~~spdg~~l~~~ 233 (689)
|..|+....... ..+-..... .........+.|.|||...++.
T Consensus 107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 152 (352)
T 2ism_A 107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT 152 (352)
T ss_dssp EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence 888887643211 111000000 0011124579999999655544
No 304
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.32 E-value=0.15 Score=51.40 Aligned_cols=205 Identities=13% Similarity=0.110 Sum_probs=126.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC-CcceeeccCccc
Q 040062 132 NWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD-WSLAHRTDGHWA 210 (689)
Q Consensus 132 ~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~-~~~~~~~~~~~~ 210 (689)
-.+|..+.||.-. ...+.|||+++.+.++.+.- ...|.-=.|-.+ +.|+..+. ..|+-|++.. ..+...+..+..
T Consensus 73 IMnP~~~ViALra-g~~LQiFnletK~klks~~~-~e~VvfWkWis~-~~L~lVT~-taVyHWs~~~~s~P~kvFdR~~~ 148 (365)
T 2xzh_A 73 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISL-NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS 148 (365)
T ss_dssp EECSSSSEEEEEE-TTEEEEEETTTTEEEEEEEC-SSCEEEEEECSS-SEEEEEES-SEEEEEESSTTCCCEEEEECCGG
T ss_pred eeCCCccEEEEec-CCeEEEechHHhhhhcceec-CCccEEEEecCC-CeEEEEcC-CcEEEEcccCCCCCceeeecchh
Confidence 3578888777765 68999999999999998884 456666677644 44554443 4899999975 334444444332
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecC---CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHG---FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
.....|-....+++.++++..+- .+.....+.++..... ....+.||.+....+....+.
T Consensus 149 --L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~-------------- 211 (365)
T 2xzh_A 149 --LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNA-------------- 211 (365)
T ss_dssp --GTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTCS--------------
T ss_pred --cccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCCC--------------
Confidence 23466888888999998887643 2233344444443332 223455665444333222111
Q ss_pred cccccCCcccccCccCCCCcEEEEEeCC---CcEEEEeCCCC---CceE-----E-ec--ccCCCCeEEEEEccCCCeEE
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQD---RTITVWTTASP---RPLF-----V-AK--HFFTQSVVDLSWSPDGYSLF 353 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~---~~~~-----~-~~--~~h~~~V~~l~~spdg~~L~ 353 (689)
....+++.+... +.++|.++... .+.+ . +. ....+-..++..|+.-..++
T Consensus 212 ----------------~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviy 275 (365)
T 2xzh_A 212 ----------------EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 275 (365)
T ss_dssp ----------------SCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEE
T ss_pred ----------------CCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEE
Confidence 112344444332 58888888543 1111 1 11 11234567788888888899
Q ss_pred EEeCCCcEEEEEeecccccc
Q 040062 354 ACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 354 sgs~DG~I~vwd~~~~~l~~ 373 (689)
.-+.-|.|++||++++....
T Consensus 276 viTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 276 LITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEETTSEEEEEETTTCCEEE
T ss_pred EEeCCcEEEEEEcccCcEEE
Confidence 99999999999999988653
No 305
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.32 E-value=0.064 Score=57.98 Aligned_cols=159 Identities=10% Similarity=0.172 Sum_probs=93.5
Q ss_pred eEEEEEEcC-CCCEE-EEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecC----CCCcEEEEEE-------cCCCCEE
Q 040062 15 QIFSIDVQP-GALRF-ATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRD----HFGSVNCVRW-------AKHGRYI 81 (689)
Q Consensus 15 ~I~si~~sp-dg~~L-atgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~v~f-------spdg~~L 81 (689)
.-..|+|+| +...| ++-...+.|++.|++. ..+.++.. .......|+| +++|++|
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~------------~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~l 207 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKN------------RMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYM 207 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTT------------TEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEE
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCC------------CEEEEEEccCccccCCCcEEEEeecccccCCCCCEE
Confidence 367899998 34444 4444446788888875 23333321 2235899999 9999967
Q ss_pred EEEeCCC-------eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEE
Q 040062 82 ASGSDDQ-------VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWN 153 (689)
Q Consensus 82 asgs~Dg-------~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd 153 (689)
+.+...+ .|.+++...... |. ....+..+..+ .....++++|++. ++++-..++.|..+|
T Consensus 208 yvad~~~~~~~~~~~V~~i~r~~~G~---~~-----~~~~~~~v~~~----~~p~giavdp~~g~LYvtd~~~g~V~r~d 275 (496)
T 3kya_A 208 IVAIDYDGKGDESPSVYIIKRNADGT---FD-----DRSDIQLIAAY----KQCNGATIHPINGELYFNSYEKGQVFRLD 275 (496)
T ss_dssp EEEECCCTTGGGEEEEEEEECCTTSC---CS-----TTSCEEEEEEE----SCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred EEEeCCCCCcccCceEEEEecCCCCc---ee-----ecccceeeccC----CCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence 6665544 255555433110 10 00001222222 2345778899554 555566778899999
Q ss_pred cC-------CCeE-----------EEE-Ee-cCCCCeEEEEEccCCCEEEEE-eCCCeEEEEECC
Q 040062 154 MS-------TGIC-----------TAV-LR-GHSSLVKGVAWDPIGSFIASQ-SDDKTVIIWRTS 197 (689)
Q Consensus 154 ~~-------~~~~-----------~~~-l~-~h~~~V~~l~~spdg~~las~-s~Dg~I~iwd~~ 197 (689)
+. ++.. ... +. ........|+|+|+|++|+.+ ...+.|+.++..
T Consensus 276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 97 5543 112 22 223456799999999965544 456788886653
No 306
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.15 E-value=0.51 Score=52.91 Aligned_cols=159 Identities=9% Similarity=-0.058 Sum_probs=97.3
Q ss_pred eEEEEEEcCCCCEEE-EEeCCCeEEEEeCCcCCCCCCCCcccceeeeee-cCCCCcEEEEEEcCCCCEEEEEeC--CCeE
Q 040062 15 QIFSIDVQPGALRFA-TGGGDHKVRIWNMKSVGKNFENDESTQRLLATL-RDHFGSVNCVRWAKHGRYIASGSD--DQVI 90 (689)
Q Consensus 15 ~I~si~~spdg~~La-tgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fspdg~~Lasgs~--Dg~I 90 (689)
....|++++.+..|. +-...+.|.+.++.. .....+ ...-.....|++.|...+|..... .+.|
T Consensus 81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG------------~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I 148 (628)
T 4a0p_A 81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDG------------QHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKI 148 (628)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTS------------TTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEE
T ss_pred CcceEEEEeCCCEEEEEECCCCEEEEEecCC------------CcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEE
Confidence 355677776555444 434467788888764 111111 233345789999986555555542 4677
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecCCCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAVLRGHSSL 169 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h~~~ 169 (689)
...+++... ...+...-.....|++++++..|+.+. ..+.|..+|+..... ..+......
T Consensus 149 ~r~~~dG~~------------------~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~l~~ 209 (628)
T 4a0p_A 149 DRAAMDGSE------------------RTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADDLPH 209 (628)
T ss_dssp EEEETTSCS------------------CEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECCSC
T ss_pred EEEeCCCCc------------------eEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeeccCCC
Confidence 777776531 111122445688999999877666665 457899999865433 334434456
Q ss_pred eEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeec
Q 040062 170 VKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRT 205 (689)
Q Consensus 170 V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~ 205 (689)
..+|++.. +.++++-...+.|...|..+++....+
T Consensus 210 P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 210 PFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EEEEEEET-TEEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred ceEEEEEC-CEEEEecCCCCEEEEEECCCCCceEEE
Confidence 67888875 444445545788999997766544433
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.09 E-value=0.11 Score=53.90 Aligned_cols=106 Identities=14% Similarity=0.034 Sum_probs=61.3
Q ss_pred CCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe-EEEEEe---cCCCCeEEEEEccC---CCEEEEEeC----C----C
Q 040062 125 TADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI-CTAVLR---GHSSLVKGVAWDPI---GSFIASQSD----D----K 189 (689)
Q Consensus 125 ~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~-~~~~l~---~h~~~V~~l~~spd---g~~las~s~----D----g 189 (689)
-.....|+|.||++ |+++..++.|+++| .+++ .+..+. ........|+|+|+ +..|..+.. + .
T Consensus 28 l~~P~~ia~~pdG~-l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~ 105 (354)
T 3a9g_A 28 LEVPWSIAPLGGGR-YLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN 105 (354)
T ss_dssp CSCEEEEEEEETTE-EEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred CCCCeEEEEcCCCe-EEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence 45678999999997 45556679999997 3554 222211 12356889999997 455544432 2 5
Q ss_pred eEEEEECCCC--cc--eeeccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 190 TVIIWRTSDW--SL--AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 190 ~I~iwd~~~~--~~--~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
.|..|+.... .. ...+-.... .........+.|.|||...++.
T Consensus 106 ~v~r~~~~~~~~~~~~~~~l~~~~~-~~~~h~~~~l~~~pDG~Lyvt~ 152 (354)
T 3a9g_A 106 RVIRGRLDGSTFKLKEVKTLIDGIP-GAYIHNGGRIRFGPDGMLYITT 152 (354)
T ss_dssp EEEEEEECSSSCCEEEEEEEEEEEE-CCSSCCCCCEEECTTSCEEEEC
T ss_pred EEEEEEECCCCcCcCccEEEEEcCC-CCCCcCCceEEECCCCcEEEEE
Confidence 6777776543 11 011100000 0111124679999999766654
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.04 E-value=0.33 Score=48.89 Aligned_cols=248 Identities=9% Similarity=0.138 Sum_probs=146.1
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKP 97 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~ 97 (689)
+.-.+|..+.||.-. ...+.|||++. ...+..+.- ...|.-=.|-.+. .|+-.+ +..|+-|++..
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnlet-----------K~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVyHWs~~~ 135 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEM-----------KSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEG 135 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTT-----------TEEEEEEEC-SSCEEEEEECSSS-EEEEEE-SSEEEEEESST
T ss_pred eeeeCCCccEEEEec-CCeEEEechHH-----------hhhhcceec-CCccEEEEecCCC-eEEEEc-CCcEEEEcccC
Confidence 344578888888776 47899999997 556666553 4577777887544 455444 36799999976
Q ss_pred CCCccccCCCCCCCcccceEEEEEecCC----CCEEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCeEEEEEecC
Q 040062 98 GSGTTEFGSGEPPDIENWKVAMTLRGHT----ADVVDLNWSPDDSILASGS-------LDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~l~~spdg~~Lasgs-------~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
.. ...+.+..|. ..|.....+++.++++..+ ..|.+.+|..+.+ .-..+++|
T Consensus 136 ~s----------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 198 (365)
T 2xzh_A 136 ES----------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 198 (365)
T ss_dssp TC----------------CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred CC----------------CCceeeecchhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc-ccceeeee
Confidence 42 2334444432 4567777788888766554 2367889998554 45566777
Q ss_pred CCCeEEEEEccC---CCEEEEEeC---CCeEEEEECCCCc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 167 SSLVKGVAWDPI---GSFIASQSD---DKTVIIWRTSDWS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 167 ~~~V~~l~~spd---g~~las~s~---Dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
...-..+.+..+ ..+|+.+.. .+.++|-++.... -.. .+.+ ....+.|-|+.
T Consensus 199 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~----~f~k-----k~vdi~fppea------------ 257 (365)
T 2xzh_A 199 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ----PFPK-----KAVDVFFPPEA------------ 257 (365)
T ss_dssp EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCC----CCCC-----EEEEECCCTTC------------
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCC----Cccc-----ccceeeCCccc------------
Confidence 544332222211 123333322 1467776663310 000 0000 01112222210
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
..+--.++..++. +.++..-..-|.|+
T Consensus 258 --------------------~~DFPVamqvs~k---------------------------------ygviyviTK~G~ih 284 (365)
T 2xzh_A 258 --------------------QNDFPVAMQISEK---------------------------------HDVVFLITKYGYIH 284 (365)
T ss_dssp --------------------TTCCEEEEEEETT---------------------------------TTEEEEEETTSEEE
T ss_pred --------------------cCCceEEEEeccc---------------------------------CCEEEEEeCCcEEE
Confidence 1112223333333 37888888999999
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
+||++++.+++..+- ..+.|..-+-+.+..=++.....|.|.-..++...+.
T Consensus 285 lyDleTgt~i~~nrI-S~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~~~iv 336 (365)
T 2xzh_A 285 LYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 336 (365)
T ss_dssp EEETTTCCEEEEEEC-CSSCEEEEEEEGGGTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEEcccCcEEEEecc-CCCceEEecccCCCCcEEEEcCCCEEEEEEECcccEe
Confidence 999999999987664 3566766666555555666678898888887766543
No 309
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.03 E-value=0.055 Score=54.96 Aligned_cols=111 Identities=8% Similarity=0.017 Sum_probs=71.8
Q ss_pred CCCCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCeEEEEEecC-----C--CCeEEEEE---ccCCCEEEEEe------
Q 040062 124 HTADVVDLNWSPDDSILASGS-LDNTIHIWNMSTGICTAVLRGH-----S--SLVKGVAW---DPIGSFIASQS------ 186 (689)
Q Consensus 124 h~~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~~~~~~~l~~h-----~--~~V~~l~~---spdg~~las~s------ 186 (689)
...--.+++|.+....|..++ ..++|..||...+........+ . ..+.+|.| +|+++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~ 90 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFN 90 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTC
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccc
Confidence 344456788987655555555 7899999999765443332211 1 14689999 68887777544
Q ss_pred -------CCCeEEEEECC---CCcceeeccCcccccC-------CcccEEEEEEcCCCCeEEEec
Q 040062 187 -------DDKTVIIWRTS---DWSLAHRTDGHWAKSL-------GSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 187 -------~Dg~I~iwd~~---~~~~~~~~~~~~~~~~-------~~~~i~~l~~spdg~~l~~~~ 234 (689)
.+..|..||+. +++.+........... .......++..++|+..++.+
T Consensus 91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s 155 (334)
T 2p9w_A 91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA 155 (334)
T ss_dssp TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE
T ss_pred ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC
Confidence 26789999998 7777655442211000 112378899999999877653
No 310
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.00 E-value=0.0011 Score=75.74 Aligned_cols=150 Identities=9% Similarity=0.007 Sum_probs=84.5
Q ss_pred CcEEEEEEcCCCCEEEEEe-CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEe
Q 040062 67 GSVNCVRWAKHGRYIASGS-DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGS 144 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs-~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs 144 (689)
..+..|+|++.+..|+.+. ..+.|+.+++....... .....+.........|++.+.+. ++++-.
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~-------------~~~~~i~~~~~~P~glavD~~~g~LY~tD~ 472 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDS 472 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C-------------CCCCBCCSCC--CCCEECCCSSSBCEECCT
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc-------------ceEEEEeCCCCCcceEEEEeeCCcEEEEec
Confidence 4567889998766666554 45789999887521000 00000111112345677775444 444445
Q ss_pred CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeC-C-CeEEEEECCCCcceeeccCcccccCCcccEEEEE
Q 040062 145 LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSD-D-KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLG 222 (689)
Q Consensus 145 ~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~-D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~ 222 (689)
..+.|.++++........+.........|+++|.+.+|+.+.. . +.|..+++........+.. .......++
T Consensus 473 ~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~------~l~~PnGla 546 (699)
T 1n7d_A 473 VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE------NIQWPNGIT 546 (699)
T ss_dssp TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCS------SCSSCCCEE
T ss_pred cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeC------CCCCccEEE
Confidence 6678999998755444433333345678999997665555442 2 6777777653322211111 112356799
Q ss_pred EcCCCCeEEEecC
Q 040062 223 WSPCGHFITTTHG 235 (689)
Q Consensus 223 ~spdg~~l~~~~~ 235 (689)
|++++..|+.+..
T Consensus 547 vd~~~~~LY~aD~ 559 (699)
T 1n7d_A 547 LDLLSGRLYWVDS 559 (699)
T ss_dssp ECTTTCCEEEEET
T ss_pred EeccCCEEEEEec
Confidence 9998887777654
No 311
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=96.93 E-value=0.0031 Score=72.15 Aligned_cols=208 Identities=10% Similarity=-0.090 Sum_probs=107.3
Q ss_pred CCEEEEEEcCCCCEEEEEe-CCCeEEEEEcCC----CeEEEEEecCCCCeEEEEEccCC-CEEEEEeCCCeEEEEECCCC
Q 040062 126 ADVVDLNWSPDDSILASGS-LDNTIHIWNMST----GICTAVLRGHSSLVKGVAWDPIG-SFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs-~Dg~I~vwd~~~----~~~~~~l~~h~~~V~~l~~spdg-~~las~s~Dg~I~iwd~~~~ 199 (689)
..+..|+|++.+..|+.+. ..+.|+.+++.. ......+........+|++++.+ +++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 4567889998776666554 457899999875 22222222122335678888654 44445456678999998754
Q ss_pred cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccc
Q 040062 200 SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSA 279 (689)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~ 279 (689)
.....+.... .....++++|.+.+|+.+.... ...+..++.........+...-.....++|++.+
T Consensus 486 ~~~~l~~~~~------~~P~giavDp~~g~ly~td~~~--~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~------ 551 (699)
T 1n7d_A 486 KRKTLFREQG------SKPRAIVVDPVHGFMYWTDWGT--PAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLS------ 551 (699)
T ss_dssp CEEEECCCSS------CCCCCEECCSSSSCCEECCCSS--SCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTT------
T ss_pred ceEEEEeCCC------CCcceEEEccCCCcEEEcccCC--CCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccC------
Confidence 4333332211 1246678888766666553211 1122222211111100000111122345555442
Q ss_pred cccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCCCceEEecc-cCCCCeEEEEEccCCCeEEEEeCC
Q 040062 280 SSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASPRPLFVAKH-FFTQSVVDLSWSPDGYSLFACSLD 358 (689)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~spdg~~L~sgs~D 358 (689)
+.++++-...+.|..+++........+.. ........|++..+ .++++....
T Consensus 552 --------------------------~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~ 604 (699)
T 1n7d_A 552 --------------------------GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIIN 604 (699)
T ss_dssp --------------------------CCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTT
T ss_pred --------------------------CEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCC
Confidence 34556656678899999875433333221 11223455666543 334444456
Q ss_pred CcEEEEEeeccccccc
Q 040062 359 GTVANFHFEVKELGHR 374 (689)
Q Consensus 359 G~I~vwd~~~~~l~~~ 374 (689)
+.|..++..+++....
T Consensus 605 ~~V~~~d~~~G~~~~~ 620 (699)
T 1n7d_A 605 EAIFSANRLTGSDVNL 620 (699)
T ss_dssp TCEEEEETTTEEEEEC
T ss_pred CeEEEEEccCCCceEE
Confidence 7888888766655433
No 312
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.80 E-value=0.18 Score=52.07 Aligned_cols=189 Identities=12% Similarity=0.173 Sum_probs=111.0
Q ss_pred EEEEEEcCCCCEEEEEe------------CCCeEEEEeCCcCCCCCCCCcccceeeee----ecCCCCcEEEEEEcC--C
Q 040062 16 IFSIDVQPGALRFATGG------------GDHKVRIWNMKSVGKNFENDESTQRLLAT----LRDHFGSVNCVRWAK--H 77 (689)
Q Consensus 16 I~si~~spdg~~Latgs------------~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~----l~~h~~~V~~v~fsp--d 77 (689)
.-.|.+.|+|..+++++ .+|.|.++|.+.... ..+.+.. +.........+.+.+ +
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~-------~~~~l~~~g~~~~~~~f~PhGi~~~~d~d 124 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEP-------AVSELEIIGNTLDISSFNPHGISTFIDDD 124 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSC-------CEEECEEECSSCCGGGCCEEEEEEEECTT
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCC-------ceEEEEccCCCCCcCceeeeeeEEEECCC
Confidence 34566788886555542 689999999874110 1122221 111234567777755 4
Q ss_pred CC-EEEEEe-C--CCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-CCCEEEEEEcCCCCEEEEEe--------
Q 040062 78 GR-YIASGS-D--DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-TADVVDLNWSPDDSILASGS-------- 144 (689)
Q Consensus 78 g~-~Lasgs-~--Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~Lasgs-------- 144 (689)
+. +|+.+. . +..|.+|+++.+... ...+..+.+. -....++.+.++|.++++..
T Consensus 125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~-------------~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~ 191 (355)
T 3sre_A 125 NTVYLLVVNHPGSSSTVEVFKFQEEEKS-------------LLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYL 191 (355)
T ss_dssp CCEEEEEEECSTTCCEEEEEEEETTTTE-------------EEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHH
T ss_pred CcEEEEEEECCCCCCeEEEEEEECCCCE-------------EEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCccc
Confidence 54 444442 2 467889888765321 1344444432 24689999999998777654
Q ss_pred ---------CCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEe-CCCeEEEEECCC-Cccee--eccCcccc
Q 040062 145 ---------LDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQS-DDKTVIIWRTSD-WSLAH--RTDGHWAK 211 (689)
Q Consensus 145 ---------~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s-~Dg~I~iwd~~~-~~~~~--~~~~~~~~ 211 (689)
..|.|..+|.. +...... .-...++|+|+||+++|+.+. ..+.|..|++.. +.... .+..
T Consensus 192 ~~~e~~~~~~~g~vyr~d~~--~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~---- 264 (355)
T 3sre_A 192 KSWEMHLGLAWSFVTYYSPN--DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF---- 264 (355)
T ss_dssp HHHHHHTTCCCEEEEEECTT--CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----
T ss_pred ccchhhccCCccEEEEEECC--eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----
Confidence 12456666653 3222222 334568999999998777665 567899999863 32211 1110
Q ss_pred cCCcccEEEEEEcC-CCCeEEEec
Q 040062 212 SLGSTFFRRLGWSP-CGHFITTTH 234 (689)
Q Consensus 212 ~~~~~~i~~l~~sp-dg~~l~~~~ 234 (689)
......++..+ +|++.+++.
T Consensus 265 ---~g~PDGi~vD~e~G~lwva~~ 285 (355)
T 3sre_A 265 ---DTLVDNISVDPVTGDLWVGCH 285 (355)
T ss_dssp ---SSEEEEEEECTTTCCEEEEEE
T ss_pred ---CCCCceEEEeCCCCcEEEEec
Confidence 23467788888 588777553
No 313
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.77 E-value=0.092 Score=52.68 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=78.2
Q ss_pred CCCEEEEEe-CC-----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC-----CeEEE
Q 040062 24 GALRFATGG-GD-----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD-----QVILI 92 (689)
Q Consensus 24 dg~~Latgs-~D-----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D-----g~I~i 92 (689)
++.+++.|+ .+ ..+.+||..+. ....+..+........++.+ ++++++.|+.+ ..+.+
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~ 82 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQ---------EWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVEC 82 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTT---------EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEE
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCC---------eEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEE
Confidence 456777777 32 46888887651 12222222211111122222 56777777755 35888
Q ss_pred EEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEEecCC
Q 040062 93 HEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-----NTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 93 wdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-----g~I~vwd~~~~~~~~~l~~h~ 167 (689)
||+.++. ...|+.+..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-....
T Consensus 83 ~d~~~~~------------~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 148 (301)
T 2vpj_A 83 LDYTADE------------DGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT 148 (301)
T ss_dssp EETTCCT------------TCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS
T ss_pred EECCCCC------------CCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC
Confidence 8887652 0124544333322222222223 56677777644 368999998765443322111
Q ss_pred CCe-EEEEEccCCCEEEEEeCC-----CeEEEEECCCCcc
Q 040062 168 SLV-KGVAWDPIGSFIASQSDD-----KTVIIWRTSDWSL 201 (689)
Q Consensus 168 ~~V-~~l~~spdg~~las~s~D-----g~I~iwd~~~~~~ 201 (689)
... .+++. -++++++.|+.+ ..+.+||..+.+-
T Consensus 149 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 187 (301)
T 2vpj_A 149 AREGAGLVV-ASGVIYCLGGYDGLNILNSVEKYDPHTGHW 187 (301)
T ss_dssp CCBSCEEEE-ETTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred CcccceEEE-ECCEEEEECCCCCCcccceEEEEeCCCCcE
Confidence 111 12222 256777777644 3588999876543
No 314
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.74 E-value=0.73 Score=48.29 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=128.8
Q ss_pred EEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-cceeeccCcc
Q 040062 131 LNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW-SLAHRTDGHW 209 (689)
Q Consensus 131 l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~ 209 (689)
.-.+|..+.||.-. ...+.|||+++.+.++.+.-.. .|.-=.|-.+ +.|+..+ +..|+-|++... .+...+..+.
T Consensus 71 AIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~~ 146 (494)
T 1bpo_A 71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRHS 146 (494)
T ss_dssp EEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred eeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecch
Confidence 34677777777665 7899999999999999887444 5555566543 4455444 348999999753 3444444433
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecC---CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCcccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHG---FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKA 286 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~ 286 (689)
. .....|-....+++.++++..+- .+...+.+.++..... ....+.||.+....+....+.
T Consensus 147 ~--L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~~------------- 210 (494)
T 1bpo_A 147 S--LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNA------------- 210 (494)
T ss_dssp G--GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEEEECTTCS-------------
T ss_pred h--cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEEEecCCCC-------------
Confidence 2 23466888888999999886642 2333444445443322 233456675555444433221
Q ss_pred ccccccCCcccccCccCCCCcEEEEEeCC---CcEEEEeCCCC---Cce-----EEec---ccCCCCeEEEEEccCCCeE
Q 040062 287 APVGWTNGTSKIGGKESQPYNVIAIGSQD---RTITVWTTASP---RPL-----FVAK---HFFTQSVVDLSWSPDGYSL 352 (689)
Q Consensus 287 ~~~~~~~~~~~~~~~~s~~~~~lasgs~D---g~I~iwd~~~~---~~~-----~~~~---~~h~~~V~~l~~spdg~~L 352 (689)
.+..+++.+... +.++|.++... .+. ..+. ..-.+-..++..|+.-..+
T Consensus 211 -----------------~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygvi 273 (494)
T 1bpo_A 211 -----------------EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVV 273 (494)
T ss_dssp -----------------SEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEE
T ss_pred -----------------CCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEE
Confidence 011355555543 78899988543 111 1111 1123456788888888899
Q ss_pred EEEeCCCcEEEEEeecccccc
Q 040062 353 FACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 353 ~sgs~DG~I~vwd~~~~~l~~ 373 (689)
+.-+.-|.|++||++++....
T Consensus 274 yviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 274 FLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEETTSEEEEEETTTCCEEE
T ss_pred EEEecCceEEEEecccceeee
Confidence 999999999999999988653
No 315
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.73 E-value=0.16 Score=52.46 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=83.2
Q ss_pred EEEEEEcCCCCEEEEEe------------CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec-----CCCCEEEE
Q 040062 69 VNCVRWAKHGRYIASGS------------DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG-----HTADVVDL 131 (689)
Q Consensus 69 V~~v~fspdg~~Lasgs------------~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~l 131 (689)
.-.+...|+|..+++++ .+|.|.++|+++..... +.+ .+.+ .......|
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-------------~~l-~~~g~~~~~~~f~PhGi 117 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-------------SEL-EIIGNTLDISSFNPHGI 117 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-------------EEC-EEECSSCCGGGCCEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-------------EEE-EccCCCCCcCceeeeee
Confidence 34566788886666652 68999999987432110 111 2222 23456677
Q ss_pred EEcC--CCC-EEEEEe-C--CCeEEEEEcCCC--e--EEEEEecC-CCCeEEEEEccCCCEEEEEeC---C---------
Q 040062 132 NWSP--DDS-ILASGS-L--DNTIHIWNMSTG--I--CTAVLRGH-SSLVKGVAWDPIGSFIASQSD---D--------- 188 (689)
Q Consensus 132 ~~sp--dg~-~Lasgs-~--Dg~I~vwd~~~~--~--~~~~l~~h-~~~V~~l~~spdg~~las~s~---D--------- 188 (689)
.+.+ ++. +|+++. . ++.|.+|++... . .+..+.+. -.....+.+.++|.++++... |
T Consensus 118 ~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~ 197 (355)
T 3sre_A 118 STFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMH 197 (355)
T ss_dssp EEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHH
T ss_pred EEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhh
Confidence 7655 454 455543 2 467888877543 2 23334332 245789999999998887641 1
Q ss_pred ---CeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 189 ---KTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 189 ---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
..=.+|.+..++.. .+.. +....+.++|+||++.++.+..
T Consensus 198 ~~~~~g~vyr~d~~~~~-~~~~------~l~~pNGia~spDg~~lYvadt 240 (355)
T 3sre_A 198 LGLAWSFVTYYSPNDVR-VVAE------GFDFANGINISPDGKYVYIAEL 240 (355)
T ss_dssp TTCCCEEEEEECTTCCE-EEEE------EESSEEEEEECTTSSEEEEEEG
T ss_pred ccCCccEEEEEECCeEE-Eeec------CCcccCcceECCCCCEEEEEeC
Confidence 12234443333222 1111 1233688999999999988765
No 316
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.72 E-value=0.75 Score=48.22 Aligned_cols=248 Identities=9% Similarity=0.138 Sum_probs=147.3
Q ss_pred EEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 18 SIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKP 97 (689)
Q Consensus 18 si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~ 97 (689)
+.-.+|..+.||.-. ...+.|||++. ...+..+.- ...|..=.|-.+ +.|+-.+ +..|+-|++..
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnle~-----------K~klks~~~-~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~ 134 (494)
T 1bpo_A 70 SAIMNPASKVIALKA-GKTLQIFNIEM-----------KSKMKAHTM-TDDVTFWKWISL-NTVALVT-DNAVYHWSMEG 134 (494)
T ss_dssp EEEECSSSSCEEEEE-TTEEEEEETTT-----------TEEEEEEEC-SSCCCEEEEEET-TEEEEEC-SSEEEEEESSS
T ss_pred eeeeCCCCcEEEEec-CCeEEEEchHH-----------hhhhcceec-CCCceEEEecCC-CeEEEEc-CCeeEEecccC
Confidence 444667777777766 47899999987 555665553 345666667643 3455544 46799999975
Q ss_pred CCCccccCCCCCCCcccceEEEEEecCC----CCEEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCeEEEEEecC
Q 040062 98 GSGTTEFGSGEPPDIENWKVAMTLRGHT----ADVVDLNWSPDDSILASGS-------LDNTIHIWNMSTGICTAVLRGH 166 (689)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~h~----~~V~~l~~spdg~~Lasgs-------~Dg~I~vwd~~~~~~~~~l~~h 166 (689)
.. ...+.+..|. ..|.....+++.++++..+ ..|.+.+|..+.+ .-..+.+|
T Consensus 135 ~s----------------~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGh 197 (494)
T 1bpo_A 135 ES----------------QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH 197 (494)
T ss_dssp SC----------------CCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCS
T ss_pred CC----------------CchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheee
Confidence 42 2344444442 4577777788888776544 2468889998554 45566777
Q ss_pred CCCeEEEEEccCC---CEEEEEeCC---CeEEEEECCCCc-ceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCC
Q 040062 167 SSLVKGVAWDPIG---SFIASQSDD---KTVIIWRTSDWS-LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKP 239 (689)
Q Consensus 167 ~~~V~~l~~spdg---~~las~s~D---g~I~iwd~~~~~-~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~ 239 (689)
......+.+..+. ..|+.+... +.++|-++.... -.. .+.+ ....+.|.|+.
T Consensus 198 aa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~----~f~k-----k~vdv~fppe~------------ 256 (494)
T 1bpo_A 198 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ----PFPK-----KAVDVFFPPEA------------ 256 (494)
T ss_dssp EEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC----CCCC-----EEEECCCCTTS------------
T ss_pred eeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC----Cccc-----eeeeeeCCccc------------
Confidence 6544333332111 234444332 567777664310 000 0000 01111121110
Q ss_pred ccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEE
Q 040062 240 RHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTIT 319 (689)
Q Consensus 240 ~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~ 319 (689)
..+--.++..++. +.++..-..-|.|+
T Consensus 257 --------------------~~DFPvamqvs~k---------------------------------ygviyviTK~G~i~ 283 (494)
T 1bpo_A 257 --------------------QNDFPVAMQISEK---------------------------------HDVVFLITKYGYIH 283 (494)
T ss_dssp --------------------TTCCEEEEEEETT---------------------------------TTEEEEEETTSEEE
T ss_pred --------------------ccCceeEEEeccc---------------------------------CCEEEEEecCceEE
Confidence 1112233344433 37888888999999
Q ss_pred EEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 320 VWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 320 iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
+||++++.+++.-+- ....|..-+-+.+..-++.....|.|.-..++...+.
T Consensus 284 lyDleTgt~i~~nrI-s~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv 335 (494)
T 1bpo_A 284 LYDLETGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (494)
T ss_dssp EEETTTCCEEEEEEC-CSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred EEecccceeeeeecc-cCCceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence 999999999987664 3566766666666566777778998888888776643
No 317
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.69 E-value=1.2 Score=49.98 Aligned_cols=176 Identities=7% Similarity=-0.075 Sum_probs=107.3
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCCCcccc
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIA-SGSDDQVILIHEKKPGSGTTEF 104 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~La-sgs~Dg~I~iwdl~~~~~~~~~ 104 (689)
.+|+.+. ...|+..+++... ......+. .-..+..|+|++.+..|. +-..++.|..++++...
T Consensus 7 ~~Ll~s~-~~~I~~i~l~~~~---------~~~~~~~~-~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~----- 70 (628)
T 4a0p_A 7 AFLLFSR-RADIRRISLETNN---------NNVAIPLT-GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSA----- 70 (628)
T ss_dssp CEEEEEE-TTEEEEEESSCTT---------CEEECCCC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-----
T ss_pred cEEEEEe-CCcEEEEECCCCC---------cceEEEcC-CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCC-----
Confidence 3555544 3689999987510 11111122 234688999998655555 44557889888887541
Q ss_pred CCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEE-EEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEE
Q 040062 105 GSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILA-SGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIA 183 (689)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~La-sgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~la 183 (689)
....+.........|++.+.+..|+ +-...+.|.+.++........+...-....+|+++|...+|+
T Consensus 71 ------------~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY 138 (628)
T 4a0p_A 71 ------------LEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMY 138 (628)
T ss_dssp ------------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEE
T ss_pred ------------cEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEE
Confidence 1112222224567888887655454 444567899999865443333333445678999999665665
Q ss_pred EEeC--CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecCC
Q 040062 184 SQSD--DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGF 236 (689)
Q Consensus 184 s~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~ 236 (689)
.... .+.|...+++......... .......+++++++..|+.+...
T Consensus 139 ~tD~g~~~~I~r~~~dG~~~~~l~~-------~~~~P~GlalD~~~~~LY~aD~~ 186 (628)
T 4a0p_A 139 WTEWGGKPKIDRAAMDGSERTTLVP-------NVGRANGLTIDYAKRRLYWTDLD 186 (628)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEEC-------SCSSEEEEEEETTTTEEEEEETT
T ss_pred EeCCCCCCEEEEEeCCCCceEEEEC-------CCCCcceEEEccccCEEEEEECC
Confidence 5552 5678888876544333222 12346889999998888887653
No 318
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.69 E-value=0.7 Score=47.42 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=68.2
Q ss_pred EEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEE--E----ecCCCCeEEEEEccC---CCEEEEE-e
Q 040062 117 VAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAV--L----RGHSSLVKGVAWDPI---GSFIASQ-S 186 (689)
Q Consensus 117 ~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~--l----~~h~~~V~~l~~spd---g~~las~-s 186 (689)
.+..+...-...+.|+|.|||.+|++--..|.|++++..+++.... + .........|+|+|+ +.+|... +
T Consensus 23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt 102 (347)
T 3das_A 23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT 102 (347)
T ss_dssp EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence 4444444556789999999998777665589999998766554222 1 123456789999995 3444432 2
Q ss_pred --CCCeEEEEECCCCc-----c--eeeccCcccccCCcccEEEEEEcCCCCeEEEec
Q 040062 187 --DDKTVIIWRTSDWS-----L--AHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTH 234 (689)
Q Consensus 187 --~Dg~I~iwd~~~~~-----~--~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~ 234 (689)
.+..|.-|.+.... . ...+-..... .....-..+.|.|||.+.++.+
T Consensus 103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECB
T ss_pred cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEEC
Confidence 34566666665421 1 1111000000 1122346799999997666653
No 319
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=96.47 E-value=0.11 Score=52.13 Aligned_cols=64 Identities=13% Similarity=0.106 Sum_probs=36.6
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCe---EEEE--EecCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCc
Q 040062 136 DDSILASGSLD-----NTIHIWNMSTGI---CTAV--LRGHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWS 200 (689)
Q Consensus 136 dg~~Lasgs~D-----g~I~vwd~~~~~---~~~~--l~~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~ 200 (689)
++.+++.|+.+ ..+.+||+.+.+ .... +......-..+.+ ++++++.|+.+ ..+.+||..+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~ 139 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQ 139 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCe
Confidence 56677777755 469999998765 3222 2111111122222 56677776643 368899987654
Q ss_pred c
Q 040062 201 L 201 (689)
Q Consensus 201 ~ 201 (689)
-
T Consensus 140 W 140 (301)
T 2vpj_A 140 W 140 (301)
T ss_dssp E
T ss_pred E
Confidence 3
No 320
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=96.43 E-value=0.2 Score=51.83 Aligned_cols=107 Identities=18% Similarity=0.070 Sum_probs=58.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEE-------ecCCCCeEEEEEccC---CCEEEEEe-C-------
Q 040062 126 ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVL-------RGHSSLVKGVAWDPI---GSFIASQS-D------- 187 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l-------~~h~~~V~~l~~spd---g~~las~s-~------- 187 (689)
.....|+|.|+++.|+++...|.|++++. .+.....+ .........|+|+|+ +.+|.... .
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~-~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~ 96 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQA-GKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA 96 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEET-TTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeC-CCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence 45789999999984445567899999985 33321111 112345689999996 44444432 2
Q ss_pred CCeEEEEECCCC--cc--eee-ccCcccccCCcccEEEEEEcCCCCeEEEe
Q 040062 188 DKTVIIWRTSDW--SL--AHR-TDGHWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 188 Dg~I~iwd~~~~--~~--~~~-~~~~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
...|..|++... .+ ... +............-..+.|.|||.+.++.
T Consensus 97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 225666666432 11 111 11100000111224579999999555443
No 321
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.42 E-value=0.27 Score=49.36 Aligned_cols=148 Identities=12% Similarity=0.132 Sum_probs=77.4
Q ss_pred CCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC----CeEEEEEcCCC
Q 040062 25 ALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD----QVILIHEKKPG 98 (689)
Q Consensus 25 g~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D----g~I~iwdl~~~ 98 (689)
+.+++.||. ...+.+||.... ....+..+......-.++.+ ++++++.|+.+ ..+.+||+.++
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~ 80 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDY---------SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKD 80 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTT---------EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTT
T ss_pred ceEEEEeCCCCCceEEEecCCCC---------CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCC
Confidence 446667765 357888888751 12222222211112222222 56677777755 56778887664
Q ss_pred CCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC------CeEEEEEcCCCeEEEEEecCCCCe-E
Q 040062 99 SGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD------NTIHIWNMSTGICTAVLRGHSSLV-K 171 (689)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D------g~I~vwd~~~~~~~~~l~~h~~~V-~ 171 (689)
.|..+..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+....-....... .
T Consensus 81 ---------------~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~ 143 (306)
T 3ii7_A 81 ---------------SWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH 143 (306)
T ss_dssp ---------------EEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC
T ss_pred ---------------eEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee
Confidence 34444433322222222233 67777777765 469999998876443311111111 1
Q ss_pred EEEEccCCCEEEEEeC---------CCeEEEEECCCCcc
Q 040062 172 GVAWDPIGSFIASQSD---------DKTVIIWRTSDWSL 201 (689)
Q Consensus 172 ~l~~spdg~~las~s~---------Dg~I~iwd~~~~~~ 201 (689)
+++. -++++++.|+. -..+.+||..+.+-
T Consensus 144 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W 181 (306)
T 3ii7_A 144 GMVE-ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETW 181 (306)
T ss_dssp EEEE-ETTEEEEECCEESCTTTCEECCCEEEEETTTTEE
T ss_pred EEEE-ECCEEEEECCCCCCCCcccccceEEEeCCCCCeE
Confidence 1222 25666666653 24588999877543
No 322
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.40 E-value=0.17 Score=50.81 Aligned_cols=64 Identities=16% Similarity=0.146 Sum_probs=36.8
Q ss_pred CCCEEEEEeCC-----CeEEEEEcCCCeEEEEEecC--CCCeEEEEEccCCCEEEEEeCCC-----eEEEEECCCCcc
Q 040062 136 DDSILASGSLD-----NTIHIWNMSTGICTAVLRGH--SSLVKGVAWDPIGSFIASQSDDK-----TVIIWRTSDWSL 201 (689)
Q Consensus 136 dg~~Lasgs~D-----g~I~vwd~~~~~~~~~l~~h--~~~V~~l~~spdg~~las~s~Dg-----~I~iwd~~~~~~ 201 (689)
++.+++.|+.+ ..+.+||..+.+....-.-. ...-..+. -++++++.|+.++ .+.+||+.+.+-
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W 136 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEW 136 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEE
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeE
Confidence 56677777754 36889999877544322111 11112222 2567777776543 577888876543
No 323
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.34 E-value=0.18 Score=50.71 Aligned_cols=104 Identities=15% Similarity=0.126 Sum_probs=56.3
Q ss_pred CEEEEEeCC--CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC----CeEEEE
Q 040062 79 RYIASGSDD--QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD----NTIHIW 152 (689)
Q Consensus 79 ~~Lasgs~D--g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D----g~I~vw 152 (689)
.+++.|+.+ ..+.+||..++ .|..+..+......-..+.+ ++.+++.|+.+ ..+.+|
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~---------------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~ 75 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDY---------------SWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCY 75 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTT---------------EEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEE
T ss_pred eEEEEeCCCCCceEEEecCCCC---------------CEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEE
Confidence 345556543 56888887765 23333222211111222222 56677777755 678999
Q ss_pred EcCCCeEEEEEecCC--CCeEEEEEccCCCEEEEEeCC------CeEEEEECCCCcc
Q 040062 153 NMSTGICTAVLRGHS--SLVKGVAWDPIGSFIASQSDD------KTVIIWRTSDWSL 201 (689)
Q Consensus 153 d~~~~~~~~~l~~h~--~~V~~l~~spdg~~las~s~D------g~I~iwd~~~~~~ 201 (689)
|+.+.+....-.... ..-..+. -++++++.|+.+ ..+.+||..+.+-
T Consensus 76 d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W 130 (306)
T 3ii7_A 76 NVVKDSWYSKLGPPTPRDSLAACA--AEGKIYTSGGSEVGNSALYLFECYDTRTESW 130 (306)
T ss_dssp ETTTTEEEEEECCSSCCBSCEEEE--ETTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred eCCCCeEEECCCCCccccceeEEE--ECCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence 998876543322111 1112222 256777777654 4588999877543
No 324
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.27 E-value=0.21 Score=49.99 Aligned_cols=148 Identities=18% Similarity=0.210 Sum_probs=74.9
Q ss_pred CCCEEEEEeCC----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC-----eEEEEE
Q 040062 24 GALRFATGGGD----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ-----VILIHE 94 (689)
Q Consensus 24 dg~~Latgs~D----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg-----~I~iwd 94 (689)
++.+++.||.+ ..+.+||.... ....+..+......-..+.+ ++++++.|+.++ .+.+||
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d 83 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEE---------RWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYD 83 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTT---------EEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCC---------cEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEEC
Confidence 45566777643 45788887651 12222222211111112222 567777777543 477787
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEEe--cCC
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDN-----TIHIWNMSTGICTAVLR--GHS 167 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg-----~I~vwd~~~~~~~~~l~--~h~ 167 (689)
..+. .|..+..+......-..+.+ ++.+++.|+.++ .+.+||+.+.+....-. ...
T Consensus 84 ~~~~---------------~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 146 (302)
T 2xn4_A 84 PVKD---------------QWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRR 146 (302)
T ss_dssp TTTT---------------EEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCC
T ss_pred CCCC---------------ceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcc
Confidence 7654 34444333222122222223 567777777653 58889988765443311 111
Q ss_pred CCeEEEEEccCCCEEEEEeCC-------CeEEEEECCCCcc
Q 040062 168 SLVKGVAWDPIGSFIASQSDD-------KTVIIWRTSDWSL 201 (689)
Q Consensus 168 ~~V~~l~~spdg~~las~s~D-------g~I~iwd~~~~~~ 201 (689)
... +++. -++++++.|+.+ ..+.+||..+.+-
T Consensus 147 ~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 147 SSV-GVGV-VGGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp BSC-EEEE-ETTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred cCc-eEEE-ECCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 111 2222 256666666532 3588999876543
No 325
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.17 E-value=0.56 Score=49.07 Aligned_cols=164 Identities=19% Similarity=0.201 Sum_probs=102.2
Q ss_pred cCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecC----CCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCcc
Q 040062 134 SPDDSILASGSLDNTIHIWNMSTGICTAVLRGH----SSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGHW 209 (689)
Q Consensus 134 spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h----~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~~ 209 (689)
+.++..++.+- ++.||.-++......+.++.. ...|..+..+|+|++||..+. ..|.|-.+..+.....-....
T Consensus 29 ~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~ 106 (452)
T 3pbp_A 29 SQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQ 106 (452)
T ss_dssp ETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHH
T ss_pred EcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccc
Confidence 34666666654 588888888754445555433 235788999999999998875 489999886321111100000
Q ss_pred cccCCcccEEEEEEcCCCCeEEEecCCCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccc
Q 040062 210 AKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPV 289 (689)
Q Consensus 210 ~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~ 289 (689)
..+.. +.+..+... .....+|..+.|+|-+.
T Consensus 107 ------~~~q~-----------------------~ty~l~~~~-----~~~~s~I~qVlWHPl~~--------------- 137 (452)
T 3pbp_A 107 ------DAFQI-----------------------FHYSIDEEE-----VGPKSSIKKVLFHPKSY--------------- 137 (452)
T ss_dssp ------HTTEE-----------------------EEEEGGGCC-------CCCCEEEEEECTTBG---------------
T ss_pred ------cccce-----------------------eEEEcCCcc-----cCCCCceeEEEeccccC---------------
Confidence 00110 011111100 11367899999999862
Q ss_pred cccCCcccccCccCCCCcEEEEEeCCCcEEEEeCCCC--CceEEecc--------cCCCCeEEEEEccCCCeEEEEe--C
Q 040062 290 GWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTASP--RPLFVAKH--------FFTQSVVDLSWSPDGYSLFACS--L 357 (689)
Q Consensus 290 ~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~--~~~~~~~~--------~h~~~V~~l~~spdg~~L~sgs--~ 357 (689)
.+..|++-..|+.|++||+... ++. .+.. .....|.+++|..++-.|++.+ .
T Consensus 138 ---------------~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~ 201 (452)
T 3pbp_A 138 ---------------RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTE 201 (452)
T ss_dssp ---------------GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTT
T ss_pred ---------------CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCC
Confidence 3468999999999999999852 222 2221 1125789999999988888866 7
Q ss_pred CCcEEEE
Q 040062 358 DGTVANF 364 (689)
Q Consensus 358 DG~I~vw 364 (689)
+|.|+-.
T Consensus 202 ~GDIYAl 208 (452)
T 3pbp_A 202 GGDIFAF 208 (452)
T ss_dssp SCEEEEE
T ss_pred CCCEEEE
Confidence 7887654
No 326
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.00 E-value=0.55 Score=49.16 Aligned_cols=154 Identities=14% Similarity=0.160 Sum_probs=94.4
Q ss_pred EcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC----CCcEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 21 VQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH----FGSVNCVRWAKHGRYIASGSDDQVILIHEKK 96 (689)
Q Consensus 21 ~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h----~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~ 96 (689)
.+.+|..++++-. +.||.-++.. ....+.+... ...|..+..+|+|++||..+. ..|.|-.+.
T Consensus 28 ~~~n~t~i~~a~~-n~iR~~~i~~-----------~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP 94 (452)
T 3pbp_A 28 SSQNGTRIVFIQD-NIIRWYNVLT-----------DSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFND-NEIFVMEVP 94 (452)
T ss_dssp EETTTTEEEEEET-TEEEEEETTT-----------CSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECS-SEEEEEECC
T ss_pred EEcCCCEEEEEEC-CEEEEEECCC-----------CCcceEEecCcccccCceeEEEECCCCCEEEEecC-CeEEEEEec
Confidence 3456666666544 6788878764 1123333221 235778999999999999865 579998887
Q ss_pred CCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCC---CCEEEEEeCCCeEEEEEcCCC--eEEEEEe-
Q 040062 97 PGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPD---DSILASGSLDNTIHIWNMSTG--ICTAVLR- 164 (689)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spd---g~~Lasgs~Dg~I~vwd~~~~--~~~~~l~- 164 (689)
.+..... .......-..+.+.- ....|..+.|+|- +..|++-..|+.|++||+... ++. .++
T Consensus 95 ~~~~~~~-----~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k 168 (452)
T 3pbp_A 95 WGYSNVE-----DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNK 168 (452)
T ss_dssp TTCSCCC-----CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESC
T ss_pred CccccCc-----ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhc
Confidence 4321100 000000011222221 2567999999995 568999999999999999752 122 332
Q ss_pred --------cCCCCeEEEEEccCCCEEEEEe--CCCeEEE
Q 040062 165 --------GHSSLVKGVAWDPIGSFIASQS--DDKTVII 193 (689)
Q Consensus 165 --------~h~~~V~~l~~spdg~~las~s--~Dg~I~i 193 (689)
.+...|.+++|..++-.|...+ ++|.|+-
T Consensus 169 ~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA 207 (452)
T 3pbp_A 169 PNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA 207 (452)
T ss_dssp CCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred cccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence 2235688899988775555544 6676654
No 327
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=95.99 E-value=0.55 Score=47.30 Aligned_cols=101 Identities=8% Similarity=0.082 Sum_probs=53.4
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC----C-------Ce
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL----D-------NT 148 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~----D-------g~ 148 (689)
+++.|+ ..+.+||..++ .|.. ..+..............++.+++.|+. + ..
T Consensus 7 l~~~GG--~~~~~yd~~~~---------------~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~ 68 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN---------------ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAY 68 (315)
T ss_dssp EEEEET--TEEEEEETTTT---------------EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEE
T ss_pred EEEEcC--CceEEECCCCC---------------eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccc
Confidence 344555 56888998765 3443 223222222333333457788888874 1 13
Q ss_pred EEEEEcCCCeEEEEEecCCCCe--EEEEEccCCCEEEEEeCC--------CeEEEEECCCCc
Q 040062 149 IHIWNMSTGICTAVLRGHSSLV--KGVAWDPIGSFIASQSDD--------KTVIIWRTSDWS 200 (689)
Q Consensus 149 I~vwd~~~~~~~~~l~~h~~~V--~~l~~spdg~~las~s~D--------g~I~iwd~~~~~ 200 (689)
+.+||..+.+.... ......- .+++.. ++++++.|+.+ ..+.+||..+.+
T Consensus 69 ~~~~d~~~~~W~~~-~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~ 128 (315)
T 4asc_A 69 FLQFDHLDSEWLGM-PPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLDSVMCYDRLSFK 128 (315)
T ss_dssp EEEEETTTTEEEEC-CCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCCCEEEEETTTTE
T ss_pred eEEecCCCCeEEEC-CCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccceEEEECCCCCc
Confidence 78899988764322 1111110 112222 56666666632 358899987654
No 328
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.61 E-value=0.44 Score=51.12 Aligned_cols=111 Identities=15% Similarity=0.093 Sum_probs=61.7
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeec------CCCCcEEEEEEcCC---CCEEE-EE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLR------DHFGSVNCVRWAKH---GRYIA-SG 84 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~------~h~~~V~~v~fspd---g~~La-sg 84 (689)
.-..|+|.|+|+++++-...+.|++++.... ....+..+. ...+.+..|+|+|+ +.+|. +-
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g---------~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~ 98 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESG---------SVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG 98 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTC---------CEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCC---------cEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence 4679999999987776544347888875420 012222222 13567889999995 44444 33
Q ss_pred eC------------CCeEEEEEcCCCCCccccCCCCCCCcccceEEE-EEec-CCCCEEEEEEcCCCCEEEEEe
Q 040062 85 SD------------DQVILIHEKKPGSGTTEFGSGEPPDIENWKVAM-TLRG-HTADVVDLNWSPDDSILASGS 144 (689)
Q Consensus 85 s~------------Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~-~l~~-h~~~V~~l~~spdg~~Lasgs 144 (689)
+. ...|.-|++..+.. .....+.+. .+.. .......|+|.|||.++++.+
T Consensus 99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~----------~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 99 TFKNPKSTDKELPNQTIIRRYTYNKSTD----------TLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp EEECTTC--CCSCEEEEEEEEEEETTTT----------EEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred eccccCCCccccccccEEEEEEECCCCC----------CcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 32 13455555543211 011112222 2221 224579999999998766654
No 329
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.50 E-value=6.1 Score=47.43 Aligned_cols=111 Identities=8% Similarity=0.082 Sum_probs=70.5
Q ss_pred cEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCC------CCEEE
Q 040062 68 SVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPD------DSILA 141 (689)
Q Consensus 68 ~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd------g~~La 141 (689)
.|.+.+.+ +.+++.++ ++.+.+++++.+.. ....... -...|.|+++.+. +.+++
T Consensus 515 ~I~~As~n--~~~vvva~-g~~l~~fel~~~~L---------------~~~~~~~-l~~evscl~i~~~~~~~~~s~~~a 575 (1158)
T 3ei3_A 515 NISVASCN--SSQVVVAV-GRALYYLQIHPQEL---------------RQISHTE-MEHEVACLDITPLGDSNGLSPLCA 575 (1158)
T ss_dssp CCCEEEEC--SSEEEEEE-TTEEEEEEEETTEE---------------EEEEEEE-CSSCEEEEECCCCSSSTTCCSEEE
T ss_pred EEEEEEeC--CCEEEEEE-CCEEEEEEeeCCce---------------eeecccC-CCCceEEEEeecCCCCcccccEEE
Confidence 45555554 33565554 57788887765310 1222222 3567999999763 36899
Q ss_pred EEeC-CCeEEEEEcCCCeEEEEEecC-CCCeEEEEEcc--CCCEEEEEeCCCeEEEEECC
Q 040062 142 SGSL-DNTIHIWNMSTGICTAVLRGH-SSLVKGVAWDP--IGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 142 sgs~-Dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~sp--dg~~las~s~Dg~I~iwd~~ 197 (689)
+|.. |++|+|+++.+.+.+....-. .....++.+.. ...+|..|-.||.+.-+.++
T Consensus 576 Vg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 576 IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred EEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence 9996 999999999887766544321 23444554432 23578889999998766654
No 330
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=95.39 E-value=0.94 Score=48.93 Aligned_cols=273 Identities=10% Similarity=0.101 Sum_probs=134.6
Q ss_pred EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceE----EEEEec----CCCCE--EEEEEc---CCCCEEEEEe-C
Q 040062 80 YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKV----AMTLRG----HTADV--VDLNWS---PDDSILASGS-L 145 (689)
Q Consensus 80 ~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~----~~~l~~----h~~~V--~~l~~s---pdg~~Lasgs-~ 145 (689)
.|.||+..|.|+|+-+.++........-.+....-|-. ...|.. ..++. ..+.+. .||++|+.-. .
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 36788999999999998875433322211111111100 000000 00111 122332 2678888877 5
Q ss_pred CCeEEEEEcCCCeEEEEEec-CCCCeEEEEEc--cCCCEEEEEeCC-------CeE---------EE---EECCCCccee
Q 040062 146 DNTIHIWNMSTGICTAVLRG-HSSLVKGVAWD--PIGSFIASQSDD-------KTV---------II---WRTSDWSLAH 203 (689)
Q Consensus 146 Dg~I~vwd~~~~~~~~~l~~-h~~~V~~l~~s--pdg~~las~s~D-------g~I---------~i---wd~~~~~~~~ 203 (689)
+..|-..++...++-..+.- ....+.+++|- |+..|++.+++. |.. .+ .|..+.+...
T Consensus 152 n~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~ 231 (638)
T 3sbq_A 152 NSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAF 231 (638)
T ss_dssp TTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEE
T ss_pred CcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEE
Confidence 56899999999888776654 34678888886 677888887753 221 01 1122222111
Q ss_pred eccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccceee--cCCceeeeeec--------CC----CC-CEEEEE
Q 040062 204 RTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLE--RGEWAATFDFL--------GH----NA-PIIVVK 268 (689)
Q Consensus 204 ~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~i~~--~~~~~~~~~l~--------~h----~~-~v~~v~ 268 (689)
++.... ....+..+++|.+.++.+-.......+.-.. ...|...+... +. .+ .|..+.
T Consensus 232 Qv~v~g-------nld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD 304 (638)
T 3sbq_A 232 QVIVDG-------NLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLD 304 (638)
T ss_dssp EEEESS-------CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEE
T ss_pred EEEcCC-------ChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEc
Confidence 111100 1223556777888777643222111111000 11111111100 00 00 111111
Q ss_pred EcCCcccccccccccc--ccccccccCCcccccCccCCCCcEEEEEeC-CCcEEEEeCCCC------C-----ceEEecc
Q 040062 269 FNHSMFRRNSASSQEV--KAAPVGWTNGTSKIGGKESQPYNVIAIGSQ-DRTITVWTTASP------R-----PLFVAKH 334 (689)
Q Consensus 269 fsp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~s~~~~~lasgs~-Dg~I~iwd~~~~------~-----~~~~~~~ 334 (689)
-. .... .............-....+++|+++++++. +.++.++|++.- + .....+.
T Consensus 305 ~~----------~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~ 374 (638)
T 3sbq_A 305 GR----------KKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP 374 (638)
T ss_dssp CS----------CBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred cc----------cccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec
Confidence 10 0000 000000011112223445778888887665 788999998731 1 1111122
Q ss_pred cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc
Q 040062 335 FFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK 369 (689)
Q Consensus 335 ~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~ 369 (689)
.-.-...+.+|+++|....+.-.|..|.-|+++..
T Consensus 375 e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 375 ELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred cCCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 22456789999999955555668999999998753
No 331
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.28 E-value=1.1 Score=45.91 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=18.3
Q ss_pred CCcEEEEEeCCC------cEEEEeCCCCCceEEecc
Q 040062 305 PYNVIAIGSQDR------TITVWTTASPRPLFVAKH 334 (689)
Q Consensus 305 ~~~~lasgs~Dg------~I~iwd~~~~~~~~~~~~ 334 (689)
++.+++.|+.++ .|.++++++++.+.....
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~ 351 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLE 351 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC--
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecc
Confidence 447788888653 366668888877665544
No 332
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.25 E-value=0.45 Score=47.79 Aligned_cols=106 Identities=11% Similarity=0.052 Sum_probs=54.5
Q ss_pred CCCEEEEEeCC----CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC----C--
Q 040062 77 HGRYIASGSDD----QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL----D-- 146 (689)
Q Consensus 77 dg~~Lasgs~D----g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~----D-- 146 (689)
++.+++.|+.+ ..+.+||..+. .|..+..+......-..+.+ ++.+++.|+. +
T Consensus 24 ~~~i~v~GG~~~~~~~~~~~~d~~~~---------------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~ 86 (308)
T 1zgk_A 24 GRLIYTAGGYFRQSLSYLEAYNPSNG---------------TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGN 86 (308)
T ss_dssp CCCEEEECCBSSSBCCCEEEEETTTT---------------EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEE
T ss_pred CCEEEEEeCcCCCCcceEEEEcCCCC---------------eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCC
Confidence 56677777642 35788887664 23332222111111112222 5666777665 2
Q ss_pred ---CeEEEEEcCCCeEEEEE--ecCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcc
Q 040062 147 ---NTIHIWNMSTGICTAVL--RGHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWSL 201 (689)
Q Consensus 147 ---g~I~vwd~~~~~~~~~l--~~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~~ 201 (689)
..+.+||+.+.+....- ......-..+.+ ++++++.|+.+ ..+.+||..+.+-
T Consensus 87 ~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 149 (308)
T 1zgk_A 87 TDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEW 149 (308)
T ss_dssp EECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEE
T ss_pred eecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeE
Confidence 46889999876543321 111111122222 56666666533 3588899876543
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=95.22 E-value=0.62 Score=46.77 Aligned_cols=153 Identities=15% Similarity=0.061 Sum_probs=76.0
Q ss_pred EEEcCCCCEEEEEeCC----CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC----C---
Q 040062 19 IDVQPGALRFATGGGD----HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD----D--- 87 (689)
Q Consensus 19 i~~spdg~~Latgs~D----g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~----D--- 87 (689)
.+..-++.+++.||.+ ..+.+||..+. ....+..+......-..+.+ ++++++.|+. +
T Consensus 19 ~~~~~~~~i~v~GG~~~~~~~~~~~~d~~~~---------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~ 87 (308)
T 1zgk_A 19 HAPKVGRLIYTAGGYFRQSLSYLEAYNPSNG---------TWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNT 87 (308)
T ss_dssp --CCCCCCEEEECCBSSSBCCCEEEEETTTT---------EEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEE
T ss_pred cccCCCCEEEEEeCcCCCCcceEEEEcCCCC---------eEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCe
Confidence 3344467778888732 46888887651 12222222111111122222 5667777765 2
Q ss_pred --CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC-----CeEEEEEcCCCeEE
Q 040062 88 --QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD-----NTIHIWNMSTGICT 160 (689)
Q Consensus 88 --g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D-----g~I~vwd~~~~~~~ 160 (689)
..+.+||+.+. .|..+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 88 ~~~~~~~~d~~~~---------------~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 150 (308)
T 1zgk_A 88 DSSALDCYNPMTN---------------QWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH 150 (308)
T ss_dssp ECCCEEEEETTTT---------------EEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE
T ss_pred ecceEEEECCCCC---------------eEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe
Confidence 35777887664 23333222211111222223 56677776643 46889999876543
Q ss_pred EEEe--cCCCCeEEEEEccCCCEEEEEeCC-----CeEEEEECCCCcc
Q 040062 161 AVLR--GHSSLVKGVAWDPIGSFIASQSDD-----KTVIIWRTSDWSL 201 (689)
Q Consensus 161 ~~l~--~h~~~V~~l~~spdg~~las~s~D-----g~I~iwd~~~~~~ 201 (689)
..-. .....-..+.+ ++++++.|+.+ ..+.+||+.+.+-
T Consensus 151 ~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 196 (308)
T 1zgk_A 151 LVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEW 196 (308)
T ss_dssp ECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEE
T ss_pred ECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeE
Confidence 3211 11111122222 56677776644 4588999876543
No 334
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.13 E-value=6 Score=45.13 Aligned_cols=276 Identities=11% Similarity=0.060 Sum_probs=141.5
Q ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCCCCEE
Q 040062 67 GSVNCVRWAKHGRYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPDDSIL 140 (689)
Q Consensus 67 ~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spdg~~L 140 (689)
..|.++....+|.+.+ ++.+| +..++..++. . ..+.. ....|.++....++..|
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~G-l~~~~~~~~~-----------------~-~~~~~~~~~~~~~~~i~~i~~d~~~~~l 205 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYNG-LCRYIPSNGK-----------------F-EGIPLPVHSSQSNLFVNSLLEDTTRQCV 205 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETTE-EEEEETTTTE-----------------E-EEECCCCCTTCSSCCEEEEEEETTTTEE
T ss_pred CeEEEEEEcCCCCEEE-EeCCC-HhhCccCCCc-----------------e-EEecCCCccccccceeEEEEEECCCCEE
Confidence 3577777777776555 44444 6667765541 1 11110 12348888887777655
Q ss_pred EEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccCc-ccccCCcccEE
Q 040062 141 ASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDGH-WAKSLGSTFFR 219 (689)
Q Consensus 141 asgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~~-~~~~~~~~~i~ 219 (689)
..|.. +-|..+|..+++...........|.++..+.+|.+.+. +.+ -+.+++..+.......... .........|.
T Consensus 206 Wigt~-~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~ 282 (758)
T 3ott_A 206 WIGTE-GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIW 282 (758)
T ss_dssp EEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEE
T ss_pred EEEEC-CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEE
Confidence 55654 56888998776543222112345888888877776554 444 5888887765443222111 11123345588
Q ss_pred EEEEcCCCCeEEEecCCCCCccccceeecCCceeeeee-----cCCCCCEEEEEEcCCccccccccccccccccccccCC
Q 040062 220 RLGWSPCGHFITTTHGFQKPRHSAPVLERGEWAATFDF-----LGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNG 294 (689)
Q Consensus 220 ~l~~spdg~~l~~~~~~~~~~~~~~i~~~~~~~~~~~l-----~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~ 294 (689)
++....+|..-+.+.. +. .+.........+.. ......|.++....++
T Consensus 283 ~i~~D~~g~lWiGT~~--Gl----~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g--------------------- 335 (758)
T 3ott_A 283 NIFADQEHNIWLGTDY--GI----SLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG--------------------- 335 (758)
T ss_dssp EEEECTTCCEEEEESS--SE----EEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC---------------------
T ss_pred EEEEcCCCCEEEEeCC--cc----cccccCCceeEEecccCCCCCCCceEEEEEEcCCC---------------------
Confidence 8888888876665532 11 11111100000000 0012234444443332
Q ss_pred cccccCccCCCCcEEEEEeCCCcEEEEeCCCCC--ceEEecc------cCCCCeEEEEEccCCCeEEEEeCCCcEEEEEe
Q 040062 295 TSKIGGKESQPYNVIAIGSQDRTITVWTTASPR--PLFVAKH------FFTQSVVDLSWSPDGYSLFACSLDGTVANFHF 366 (689)
Q Consensus 295 ~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~~~~--~~~~~~~------~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~ 366 (689)
.|..|+.+| +..++..+++ ....+.. .....|.++.-..+|++.+ |+ ++-|..|+.
T Consensus 336 -------------~lWiGt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~ 399 (758)
T 3ott_A 336 -------------FYWFGGANG-LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDY 399 (758)
T ss_dssp -------------CEEEEETTE-EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEET
T ss_pred -------------CEEEeeCCc-ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCc
Confidence 344455554 6666655432 1222211 1124588998888887544 55 457888887
Q ss_pred eccccccccChHHHHHHHHhccCCccCceeeeecCchhhhhHhhccccc
Q 040062 367 EVKELGHRLSDAELDELKRSRYGDVRGRLANLAETPAQLLLEAASAKET 415 (689)
Q Consensus 367 ~~~~l~~~l~~~~~~~~~~~~~g~~~~~I~~l~~Spdg~~Las~s~DG~ 415 (689)
.+++...-.... ....-....|.++....+|.+.+.....|-
T Consensus 400 ~~~~~~~~~~~~-------~~~~~~~~~v~~i~~d~~g~lWigT~~~Gl 441 (758)
T 3ott_A 400 ATRQFIHYNIVD-------NTGTYNTNWTYYIFEDTAGQLWISTCLGGI 441 (758)
T ss_dssp TTTEEEEEEEEC-------CC--CBSSSEEEEEECTTSEEEEEESSSCE
T ss_pred CCCcEEEeecCC-------CcCCCCCceEEEEEEcCCCCEEEEECCCce
Confidence 766543211000 000001235788888887765553323343
No 335
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=95.09 E-value=3.1 Score=41.66 Aligned_cols=161 Identities=7% Similarity=-0.034 Sum_probs=88.6
Q ss_pred cCCCCEEEEEeC--CCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCC------------
Q 040062 22 QPGALRFATGGG--DHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDD------------ 87 (689)
Q Consensus 22 spdg~~Latgs~--Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~D------------ 87 (689)
+.+|.+|..... ++.|+..+.+. .....+... .+--++++|.+|..+...
T Consensus 22 ~~~g~~iy~~n~~d~~~ly~~~~dg------------~~~~~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~ 85 (302)
T 3s25_A 22 CESDGEVFFSNTNDNGRLYAMNIDG------------SNIHKLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSY 85 (302)
T ss_dssp EEETTEEEEEEGGGTTEEEEEETTS------------CSCEEEEEE----EEEEEEECSSEEEEEEECC------CCSSC
T ss_pred EEeCCEEEEEeCCCCceEEEEcCCC------------CCCEEccCC----ceeeEEEcCCEEEEEECCCCcccccceecc
Confidence 356767766642 45555555442 223333322 234567889988877653
Q ss_pred --CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe----CCCeEEEEEcCCCeEEE
Q 040062 88 --QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS----LDNTIHIWNMSTGICTA 161 (689)
Q Consensus 88 --g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs----~Dg~I~vwd~~~~~~~~ 161 (689)
..|+..+++.... .. +.. .. ...|++++.+|+-.. ....|...++.... ..
T Consensus 86 n~~~Iy~i~~dg~~~---------------~~---l~~--~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~ 142 (302)
T 3s25_A 86 DRNSLCRIKRNGHGS---------------TV---LDP--DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEE-KK 142 (302)
T ss_dssp CSEEEEEEETTSCCC---------------EE---EEC--SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCC-CE
T ss_pred CCCeEEEEeCCCCcc---------------eE---eec--CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCC-eE
Confidence 3566666655421 11 111 11 236777888888776 23456666665433 33
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeC-CCeEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSD-DKTVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
.+..+.. ..|+++++.|+-.+. ...|..-++........+... . ...+.|++.+|+-...
T Consensus 143 ~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~---------~-~~~~~P~g~~iy~t~~ 203 (302)
T 3s25_A 143 KIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCN---------C-YKPVVLDDTNVYYMDV 203 (302)
T ss_dssp EEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSC---------E-EEEEEEETTEEEEEEG
T ss_pred EEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCC---------c-cceeeecCCEEEEEEc
Confidence 4443433 456788888886665 567888887665544333221 1 1235588888887643
No 336
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=95.01 E-value=4.6 Score=43.15 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=61.1
Q ss_pred cEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEE--EecCCCCEEEEEEcCC----CCEE
Q 040062 68 SVNCVRWAKHGR-YIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMT--LRGHTADVVDLNWSPD----DSIL 140 (689)
Q Consensus 68 ~V~~v~fspdg~-~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~--l~~h~~~V~~l~~spd----g~~L 140 (689)
.-..|+|.|+|. .|+.+...|.|++++.+.......+. ++. ..... ..........|+|+|+ +.+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~-----~~~--~~~~~g~~~~~e~Gllgia~~P~f~~n~~lY 87 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYL-----DIH--KLVQSGIKGGDERGLLSLAFHPNYKKNGKLY 87 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSE-----ECT--TTBCCCCSSSCCCSEEEEEECTTHHHHCEEE
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeec-----CCc--ceeccCccccCCCcceeeEeCCCCcCCCEEE
Confidence 457899999996 44455678999999643221000000 000 00000 0012456889999996 3333
Q ss_pred EEEeC--C----------CeEEEEEcCC----------CeEEEEEe--cCCCCeEEEEEccCCCEEEEEeCCC
Q 040062 141 ASGSL--D----------NTIHIWNMST----------GICTAVLR--GHSSLVKGVAWDPIGSFIASQSDDK 189 (689)
Q Consensus 141 asgs~--D----------g~I~vwd~~~----------~~~~~~l~--~h~~~V~~l~~spdg~~las~s~Dg 189 (689)
++-+. + ..|.-|.+.. .+.+..+. ........|.|.|||.++++.++.+
T Consensus 88 v~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 88 VSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp EEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred EEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 33221 1 1455565532 23333332 2223467899999998877766543
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.94 E-value=1.5 Score=44.13 Aligned_cols=67 Identities=10% Similarity=0.100 Sum_probs=36.4
Q ss_pred EcCCCCEEEEEeC----CC-------eEEEEEcCCCeEEEE--EecCCCCeEEEEEccCCCEEEEEeCC-------CeEE
Q 040062 133 WSPDDSILASGSL----DN-------TIHIWNMSTGICTAV--LRGHSSLVKGVAWDPIGSFIASQSDD-------KTVI 192 (689)
Q Consensus 133 ~spdg~~Lasgs~----Dg-------~I~vwd~~~~~~~~~--l~~h~~~V~~l~~spdg~~las~s~D-------g~I~ 192 (689)
...++.+++.|+. ++ .+.+||..+.+.... +......-..+.+ ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 3457778888873 11 278889887654332 1111111122222 56677777653 2578
Q ss_pred EEECCCCcc
Q 040062 193 IWRTSDWSL 201 (689)
Q Consensus 193 iwd~~~~~~ 201 (689)
+||..+.+-
T Consensus 131 ~yd~~~~~W 139 (318)
T 2woz_A 131 CYDPVAAKW 139 (318)
T ss_dssp EEETTTTEE
T ss_pred EEeCCCCCE
Confidence 888876543
No 338
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.68 E-value=0.37 Score=45.73 Aligned_cols=156 Identities=10% Similarity=0.097 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.+..++|+|+|.+.++ .+|.++-.+..+.....-. ...+.+-.. +-.+ -.++.|.|+|.+.++ .||.|.-++
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~--~s~t~IG~~-Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~ 113 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWM--GRAKKIGNG-GWNQ-FQFLFFDPNGYLYAV--SKDKLYKAS 113 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHH--HHCEEEECS-CGGG-CSEEEECTTSCEEEE--ETTEEEEES
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCccccc--ccccEeccc-cccc-ceEEEECCCCCEEEe--CCCEEEEeC
Confidence 5779999999997777 5677655554321000000 001111100 1111 368899999998887 558887776
Q ss_pred cCCCCCccccCCCCCCCcccceEEEE-E-ecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe------EEEEE-ec
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMT-L-RGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI------CTAVL-RG 165 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~-l-~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~------~~~~l-~~ 165 (689)
-.+.. ...|.-... + .+-=..+..|.|.|+|.+.++. |+.++-+..-+.. ....+ ..
T Consensus 114 pP~~~------------~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~ 179 (236)
T 1tl2_A 114 PPQSD------------TDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQG 179 (236)
T ss_dssp CCCST------------TCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESS
T ss_pred CCcCC------------CCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccC
Confidence 43321 112311111 1 1112468999999999876666 7775443332111 01111 12
Q ss_pred CCCCeEEEEEccCCCEEEEEeCCCeEEEEEC
Q 040062 166 HSSLVKGVAWDPIGSFIASQSDDKTVIIWRT 196 (689)
Q Consensus 166 h~~~V~~l~~spdg~~las~s~Dg~I~iwd~ 196 (689)
....-.-+.|.+++.++++. ++ ++|..
T Consensus 180 g~~~yr~l~f~~~G~l~~v~--~g--~~Y~~ 206 (236)
T 1tl2_A 180 GWDTFKFLFFSSVGTLFGVQ--GG--KFYED 206 (236)
T ss_dssp SGGGEEEEEECTTSCEEEEE--TT--EEEEE
T ss_pred CcceEEEEEECCCCcEEEEe--CC--eEEec
Confidence 22334446688888877666 66 44443
No 339
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=94.57 E-value=1.6 Score=43.71 Aligned_cols=144 Identities=8% Similarity=0.022 Sum_probs=70.8
Q ss_pred EEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeC-----C------CeEEEEEc
Q 040062 27 RFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSD-----D------QVILIHEK 95 (689)
Q Consensus 27 ~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~-----D------g~I~iwdl 95 (689)
+++.|+ ..+.+||..+. .... ..+..............++++++.|+. . ..+.+||.
T Consensus 7 l~~~GG--~~~~~yd~~~~---------~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~ 74 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAAN---------ECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDH 74 (315)
T ss_dssp EEEEET--TEEEEEETTTT---------EEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEET
T ss_pred EEEEcC--CceEEECCCCC---------eEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecC
Confidence 445555 57999998761 1221 222211122222233347788888873 1 12667777
Q ss_pred CCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCC--------CeEEEEEcCCCeEEEEEecCC
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLD--------NTIHIWNMSTGICTAVLRGHS 167 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~D--------g~I~vwd~~~~~~~~~l~~h~ 167 (689)
.++ .|..+..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-...-....
T Consensus 75 ~~~---------------~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~ 137 (315)
T 4asc_A 75 LDS---------------EWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137 (315)
T ss_dssp TTT---------------EEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS
T ss_pred CCC---------------eEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC
Confidence 654 23332222111111112222 56667777642 468999998875433211111
Q ss_pred CCe-EEEEEccCCCEEEEEeC-C-----CeEEEEECCCCc
Q 040062 168 SLV-KGVAWDPIGSFIASQSD-D-----KTVIIWRTSDWS 200 (689)
Q Consensus 168 ~~V-~~l~~spdg~~las~s~-D-----g~I~iwd~~~~~ 200 (689)
..- .+++. -++++++.|+. + ..+.+||..+.+
T Consensus 138 ~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 176 (315)
T 4asc_A 138 VVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE 176 (315)
T ss_dssp CCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred cccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence 111 12222 35667777765 2 368899987654
No 340
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=94.48 E-value=0.56 Score=44.50 Aligned_cols=103 Identities=17% Similarity=0.111 Sum_probs=61.6
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE------EEEEe--cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 126 ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC------TAVLR--GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~------~~~l~--~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
..+.+++|+|++.+.++ .+|.+.-.+..+... -..+- +-. .-.++.|+|+|.+.++ .||.|+-++-.
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 36779999998886655 678777777654211 11111 111 1478999999998888 45888777643
Q ss_pred CCcceeeccC-cccccCCcccEEEEEEcCCCCeEEEe
Q 040062 198 DWSLAHRTDG-HWAKSLGSTFFRRLGWSPCGHFITTT 233 (689)
Q Consensus 198 ~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~~l~~~ 233 (689)
+.....-+.. ......+-..+..+.|.|+|...++.
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~ 152 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH 152 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE
T ss_pred cCCCCceeccccEeccCCCCceEEEEECCCceEEEEe
Confidence 2111111100 00000011237999999999988887
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=94.29 E-value=2.2 Score=42.84 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=35.8
Q ss_pred CCCEEEEEeCC-------CeEEEEEcCCCeEEEEEecCCCCe-EEEEEccCCCEEEEEeC------CCeEEEEECCCCc
Q 040062 136 DDSILASGSLD-------NTIHIWNMSTGICTAVLRGHSSLV-KGVAWDPIGSFIASQSD------DKTVIIWRTSDWS 200 (689)
Q Consensus 136 dg~~Lasgs~D-------g~I~vwd~~~~~~~~~l~~h~~~V-~~l~~spdg~~las~s~------Dg~I~iwd~~~~~ 200 (689)
++.+++.|+.+ ..+.+||+.+.+-...-......- .+++. .++++++.|+. -..+.+||..+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56777777754 358889998765443211111100 11222 35666666653 2358899987654
No 342
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.20 E-value=0.63 Score=47.74 Aligned_cols=57 Identities=4% Similarity=-0.152 Sum_probs=28.6
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEeCCC------cEEEEEeeccccccc
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDG------TVANFHFEVKELGHR 374 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG------~I~vwd~~~~~l~~~ 374 (689)
.+.+||+.+.+-...-..... ...+.+..-++++++.|+.++ .|.++++++++....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~ 348 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQ 348 (357)
T ss_dssp CCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEE
T ss_pred eEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEee
Confidence 577899886643322111111 111222334778888888653 356668887776543
No 343
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=93.63 E-value=12 Score=42.51 Aligned_cols=315 Identities=11% Similarity=0.039 Sum_probs=162.0
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeee-eecC----CCCcEEEEEEcCCCCEEEEEeCCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA-TLRD----HFGSVNCVRWAKHGRYIASGSDDQ 88 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~-~l~~----h~~~V~~v~fspdg~~Lasgs~Dg 88 (689)
..|.++....+|.+.+ |+.+ -|..|+... .+... .+.. ....|.++....++..|..|+. +
T Consensus 146 ~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~-----------~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~ 211 (758)
T 3ott_A 146 NTIYSIIRTKDNQIYV-GTYN-GLCRYIPSN-----------GKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-G 211 (758)
T ss_dssp SCEEEEEECTTCCEEE-EETT-EEEEEETTT-----------TEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-E
T ss_pred CeEEEEEEcCCCCEEE-EeCC-CHhhCccCC-----------CceEEecCCCccccccceeEEEEEECCCCEEEEEEC-C
Confidence 3588888888887665 4444 477787654 11111 0111 1234889988887776555654 4
Q ss_pred eEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec---
Q 040062 89 VILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG--- 165 (689)
Q Consensus 89 ~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~--- 165 (689)
-+..++..++. +.....+ ....|.++....++.+.+ |+ ++-|.+++..+++.......
T Consensus 212 Gl~~~~~~~~~---------------~~~~~~l--~~~~i~~i~~d~~g~lWi-gT-~~Gl~~~~~~~~~~~~~~~~~~~ 272 (758)
T 3ott_A 212 YLFQYFPSTGQ---------------IKQTEAF--HNNSIKSLALDGNGDLLA-GT-DNGLYVYHNDTTPLQHIIHDSRN 272 (758)
T ss_dssp EEEEEETTTTE---------------EEEEEEE--EEEEEEEEEECTTCCEEE-EE-TTEEEEECCTTSCCEEECCCTTC
T ss_pred CCeEEcCCCCe---------------EEeccCC--CCCeEEEEEEcCCCCEEE-Ee-CCceeEEecCCCcEEEEEcCCCC
Confidence 57778876541 0111122 234588888887776554 44 45688899876544322110
Q ss_pred ----CCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC-cccccCCcccEEEEEEcCCCCeEEEecCCCCCc
Q 040062 166 ----HSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG-HWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPR 240 (689)
Q Consensus 166 ----h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~ 240 (689)
....|.++..+.+|.+- .|+..| +.++.... . ...+.. ..........+.++....+|...+.... +
T Consensus 273 ~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l~~~~~~~-~-~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~--G-- 344 (758)
T 3ott_A 273 IQSLTNNIIWNIFADQEHNIW-LGTDYG-ISLSRYNS-A-LQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN--G-- 344 (758)
T ss_dssp TTSCSCSCEEEEEECTTCCEE-EEESSS-EEEECCCC---CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT--E--
T ss_pred cCcCCcCeEEEEEEcCCCCEE-EEeCCc-ccccccCC-c-eeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC--c--
Confidence 22468899888877644 455556 54443221 1 111100 0001112234788888888877666421 1
Q ss_pred cccceeecCCce-eeee-ec-------CCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEE
Q 040062 241 HSAPVLERGEWA-ATFD-FL-------GHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAI 311 (689)
Q Consensus 241 ~~~~i~~~~~~~-~~~~-l~-------~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~las 311 (689)
+..++..... ..+. +. -....|.++.-..+ ++ |..
T Consensus 345 --l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~---------------------------------g~-lWi 388 (758)
T 3ott_A 345 --LIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKE---------------------------------QQ-LWI 388 (758)
T ss_dssp --EEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTT---------------------------------SC-EEE
T ss_pred --ceeecccccccceeEEeccCCcCCCCCCCceEEEEECCC---------------------------------CC-EEE
Confidence 1122211100 0000 00 01123444443333 23 444
Q ss_pred EeCCCcEEEEeCCCCCceEEec-cc----CCCCeEEEEEccCCCeEEEEeCCCcEEEEEeecc------ccc--cccChH
Q 040062 312 GSQDRTITVWTTASPRPLFVAK-HF----FTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVK------ELG--HRLSDA 378 (689)
Q Consensus 312 gs~Dg~I~iwd~~~~~~~~~~~-~~----h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~------~l~--~~l~~~ 378 (689)
|. ++-|..||..+++...... .. ....|.++.-..+|. |..|+..+-|.+++..+. ... ....
T Consensus 389 gt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~-- 464 (758)
T 3ott_A 389 AT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYS-- 464 (758)
T ss_dssp EE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEEC--
T ss_pred Ee-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCC-EEEEECCCceEEEccccccccCCcceecccccc--
Confidence 55 4568889987764432211 11 134588888877776 555776777888885431 010 0000
Q ss_pred HHHHHHHhccCCccCceeeeecCchhhhhH-hhccccce
Q 040062 379 ELDELKRSRYGDVRGRLANLAETPAQLLLE-AASAKETT 416 (689)
Q Consensus 379 ~~~~~~~~~~g~~~~~I~~l~~Spdg~~La-s~s~DG~v 416 (689)
...+-....|.++....+|.+-+ .++.+|-.
T Consensus 465 -------~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~ 496 (758)
T 3ott_A 465 -------VHNGLSGMFINQIIPDNEGNVWVLLYNNKGID 496 (758)
T ss_dssp -------GGGTCSCSCEEEEEECTTSCEEEEETTCSSEE
T ss_pred -------cccccccceeeeEEEcCCCCEEEEccCCCCcE
Confidence 00111223588899988887665 34455644
No 344
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.56 E-value=3.1 Score=50.24 Aligned_cols=249 Identities=9% Similarity=0.133 Sum_probs=131.7
Q ss_pred EEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCC
Q 040062 20 DVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHEKKPGS 99 (689)
Q Consensus 20 ~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwdl~~~~ 99 (689)
-.+|..+.||.-. ...+.|||+++ ...+..+. ....|.-=.|-.+. .|+-.+ +..|.-|++....
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~-----------k~klks~~-~~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s 136 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEM-----------KSKMKAHT-MTDDVTFWKWISLN-TVALVT-DNAVYHWSMEGES 136 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHH-----------hhhhcccc-cCCCceEEEecCCC-eeEEEc-CCeEEEeccCCCC
Confidence 3456666666655 47899999986 44444444 23456666776544 344443 4679999997532
Q ss_pred C-ccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEe-------CCCeEEEEEcCCCeEEEEEecCCCCeE
Q 040062 100 G-TTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGS-------LDNTIHIWNMSTGICTAVLRGHSSLVK 171 (689)
Q Consensus 100 ~-~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs-------~Dg~I~vwd~~~~~~~~~l~~h~~~V~ 171 (689)
. ...| .....+. ...|..-..+++.++++..| ..|.+.+|+.+.+ ....+.||-....
T Consensus 137 ~P~k~f-----------dR~~~L~--~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~ 202 (1630)
T 1xi4_A 137 QPVKMF-----------DRHSSLA--GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFA 202 (1630)
T ss_pred ccHHHH-----------hcchhcc--cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhh
Confidence 1 1111 2222222 35577777788888766544 3578889988543 3344556654433
Q ss_pred EEEEcc---CCCEEEEEeC---CCeEEEEECCCC-cceeeccCcccccCCcccEEEEEEcCCCCeEEEecCCCCCccccc
Q 040062 172 GVAWDP---IGSFIASQSD---DKTVIIWRTSDW-SLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAP 244 (689)
Q Consensus 172 ~l~~sp---dg~~las~s~---Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~~~~~~~~~~ 244 (689)
.+.... ....++.+.. .+.++|-++... .-. ..+.+ ....+.|.|+.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~----~~f~k-----k~~~~~~~~~~----------------- 256 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGN----QPFPK-----KAVDVFFPPEA----------------- 256 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCC----CCCcc-----ccccccCCccc-----------------
Confidence 333221 1122222221 246666666331 000 00000 01111121110
Q ss_pred eeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccccccccCCcccccCccCCCCcEEEEEeCCCcEEEEeCC
Q 040062 245 VLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAAPVGWTNGTSKIGGKESQPYNVIAIGSQDRTITVWTTA 324 (689)
Q Consensus 245 i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~lasgs~Dg~I~iwd~~ 324 (689)
...--..+..++ ...++..-+.-|.|.+||+.
T Consensus 257 ---------------~~Dfpv~~~vs~---------------------------------k~g~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 257 ---------------QNDFPVAMQISE---------------------------------KHDVVFLITKYGYIHLYDLE 288 (1630)
T ss_pred ---------------ccCcceEEEecc---------------------------------ccCEEEEEecCceEEEEecc
Confidence 001112222222 34677888889999999999
Q ss_pred CCCceEEecccCCCCeEEEEEccCCCeEEEEeCCCcEEEEEeeccccc
Q 040062 325 SPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGTVANFHFEVKELG 372 (689)
Q Consensus 325 ~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs~DG~I~vwd~~~~~l~ 372 (689)
++.+++.-+- ....|...+-+....-++.....|.|.-..++...+.
T Consensus 289 t~~~i~~~ri-s~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 289 TGTCIYMNRI-SGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred cchhhhhccc-cCCceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 9988876543 3445555554444344555557777777777665543
No 345
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=93.32 E-value=7.2 Score=38.94 Aligned_cols=126 Identities=6% Similarity=-0.032 Sum_probs=71.1
Q ss_pred EEcCCCCEEEEEe--CCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeC-CCeE
Q 040062 73 RWAKHGRYIASGS--DDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSL-DNTI 149 (689)
Q Consensus 73 ~fspdg~~Lasgs--~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~-Dg~I 149 (689)
.|++++++|+... .++.-.||.+.... .....+..+.. ..|+++++.|+-.+. ...|
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG----------------s~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~I 169 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDG----------------EEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQL 169 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTS----------------CCCEEEESSCC----CCSEEETTEEEEECTTTCCE
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCC----------------CCeEEEeCCCc----eEeeEECCEEEEEeCCCceE
Confidence 6778899888776 34444444443321 11222333322 456678887776665 5688
Q ss_pred EEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCC--eEEEEECCCCcceeeccCcccccCCcccEEEEEEcCCC
Q 040062 150 HIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDK--TVIIWRTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCG 227 (689)
Q Consensus 150 ~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~i~~l~~spdg 227 (689)
.+.++..+.....+.+ ... ..++|++.+|+-...++ .|..-++..... ..+... .+ ..|+|++
T Consensus 170 y~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~~--------~~--~~~~~~g 234 (302)
T 3s25_A 170 YRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTEA--------NI--EHYNVYG 234 (302)
T ss_dssp EEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSCS--------CE--EEEEEET
T ss_pred EEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeCC--------Cc--ceEEECC
Confidence 8888876655444432 222 34669999888766442 455555554432 222211 12 3478888
Q ss_pred CeEEEe
Q 040062 228 HFITTT 233 (689)
Q Consensus 228 ~~l~~~ 233 (689)
.+|..+
T Consensus 235 ~~Iy~~ 240 (302)
T 3s25_A 235 SLIFYQ 240 (302)
T ss_dssp TEEEEE
T ss_pred CEEEEE
Confidence 888765
No 346
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.29 E-value=2 Score=43.88 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=67.0
Q ss_pred CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-CCcEEEEEEc--C-CCCEEEEE-eCCCeEEEEEcCCCCC
Q 040062 26 LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-FGSVNCVRWA--K-HGRYIASG-SDDQVILIHEKKPGSG 100 (689)
Q Consensus 26 ~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~v~fs--p-dg~~Lasg-s~Dg~I~iwdl~~~~~ 100 (689)
.++++++.||.|+-+|.++ ++.+.++... ..++....-. + ++..++.. +.||.|..++..++.
T Consensus 11 ~~V~v~t~dG~l~Ald~~t-----------G~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~- 78 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRN-----------GHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGL- 78 (339)
T ss_dssp EEEEEEETTSCEEEEETTT-----------TEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEE-
T ss_pred CEEEEEeCCCeEEEEECCC-----------CcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCc-
Confidence 4788899999999999887 6666666533 1122211100 1 22333333 579999999887652
Q ss_pred ccccCCCCCCCcccceEEEEEec----CCCCEEE---EEE-----cCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 101 TTEFGSGEPPDIENWKVAMTLRG----HTADVVD---LNW-----SPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~l~~----h~~~V~~---l~~-----spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
....+.. ...++.. ... +..+..+++++.++.+...|+.+|+.+..+..
T Consensus 79 ----------------~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 79 ----------------QKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp ----------------EEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ----------------EEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 1111110 1112221 000 01355788999999999999999999999874
No 347
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=91.89 E-value=15 Score=39.11 Aligned_cols=109 Identities=17% Similarity=0.069 Sum_probs=60.5
Q ss_pred CCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC---eEEEEEe---------cCCCCeEEEEEccC----CCEEEEEeC-
Q 040062 126 ADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTG---ICTAVLR---------GHSSLVKGVAWDPI----GSFIASQSD- 187 (689)
Q Consensus 126 ~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~---~~~~~l~---------~h~~~V~~l~~spd----g~~las~s~- 187 (689)
..-+.|+|.||+. .|+++...|.|++++.... ..+..+. ........|+|+|+ +.+.++-+.
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~ 93 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN 93 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence 4578999999996 5666678899999975422 1222221 11356789999996 443333221
Q ss_pred -C----------CeEEEEECCCC--c-----ceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 188 -D----------KTVIIWRTSDW--S-----LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 188 -D----------g~I~iwd~~~~--~-----~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
+ ..|.-|.+... . ....+.. .......-.-.++.|.|||.+.++.+.
T Consensus 94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~-~~~~~~~H~g~~l~fgpDG~LYv~~Gd 158 (463)
T 2wg3_C 94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLE-VAELHRKHLGGQLLFGPDGFLYIILGD 158 (463)
T ss_dssp CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEE-EEESSSSSCEEEEEECTTSCEEEEECC
T ss_pred CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEE-cCCCCCcccCCcEeECCCCcEEEEeCC
Confidence 1 13444665432 1 0111111 111112334678999999976665543
No 348
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=91.52 E-value=5.7 Score=47.98 Aligned_cols=205 Identities=13% Similarity=0.118 Sum_probs=117.3
Q ss_pred EEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC-cceeeccCccc
Q 040062 132 NWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW-SLAHRTDGHWA 210 (689)
Q Consensus 132 ~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~-~~~~~~~~~~~ 210 (689)
-.+|..+.+|.-. ..++.|||+.+.+.++.+.- ...|.-=.|-.+. .|+..+ +..|.-|++... .+...+..+..
T Consensus 72 IMnP~~~iiALra-g~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~ 147 (1630)
T 1xi4_A 72 IMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHSS 147 (1630)
T ss_pred ccCCCcceEEEec-CCeEEEeehHHhhhhccccc-CCCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcchh
Confidence 3567677666654 68999999999888877763 3456555665433 444443 347999999642 33333333322
Q ss_pred ccCCcccEEEEEEcCCCCeEEEecC---CCCCccccceeecCCceeeeeecCCCCCEEEEEEcCCccccccccccccccc
Q 040062 211 KSLGSTFFRRLGWSPCGHFITTTHG---FQKPRHSAPVLERGEWAATFDFLGHNAPIIVVKFNHSMFRRNSASSQEVKAA 287 (689)
Q Consensus 211 ~~~~~~~i~~l~~spdg~~l~~~~~---~~~~~~~~~i~~~~~~~~~~~l~~h~~~v~~v~fsp~~~~~~~~~~~~~~~~ 287 (689)
.....|-...-+++.++++..+- .+...+.+.++..... ....+.||.+....+......
T Consensus 148 --L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~~F~~~~~~~~~-------------- 210 (1630)
T 1xi4_A 148 --LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGNA-------------- 210 (1630)
T ss_pred --cccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHhhhheeccCCCC--------------
Confidence 22455777788899998887643 2233344444433221 122344554443333222110
Q ss_pred cccccCCcccccCccCCCCcEEEEEeC---CCcEEEEeCCCC---CceE------Eec--ccCCCCeEEEEEccCCCeEE
Q 040062 288 PVGWTNGTSKIGGKESQPYNVIAIGSQ---DRTITVWTTASP---RPLF------VAK--HFFTQSVVDLSWSPDGYSLF 353 (689)
Q Consensus 288 ~~~~~~~~~~~~~~~s~~~~~lasgs~---Dg~I~iwd~~~~---~~~~------~~~--~~h~~~V~~l~~spdg~~L~ 353 (689)
.+..+++.+.. .+.++|.++... .+.+ .+. ..-..-..++..|+.-..++
T Consensus 211 ----------------~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy 274 (1630)
T 1xi4_A 211 ----------------EESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVF 274 (1630)
T ss_pred ----------------CCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEE
Confidence 11133433332 267888887543 1111 111 01123456677788777888
Q ss_pred EEeCCCcEEEEEeecccccc
Q 040062 354 ACSLDGTVANFHFEVKELGH 373 (689)
Q Consensus 354 sgs~DG~I~vwd~~~~~l~~ 373 (689)
.-+.-|.|++||++++....
T Consensus 275 ~itk~G~~~~~d~~t~~~i~ 294 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIY 294 (1630)
T ss_pred EEecCceEEEEecccchhhh
Confidence 89999999999999987653
No 349
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.00 E-value=3.2 Score=47.03 Aligned_cols=153 Identities=11% Similarity=0.105 Sum_probs=80.1
Q ss_pred CCCEEEEEeCC------CeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCC--eEEEEEc
Q 040062 24 GALRFATGGGD------HKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQ--VILIHEK 95 (689)
Q Consensus 24 dg~~Latgs~D------g~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg--~I~iwdl 95 (689)
++++++.||.+ ..+.+||..+ .....+..+......-. ++...++++++.|+.++ .+.+||.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t---------~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~ 520 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKT---------REWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNV 520 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTT---------TEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEET
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCC---------CcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEEC
Confidence 77777887753 3477787765 11222222221111112 22223788888887654 6888888
Q ss_pred CCCCCccccCCCCCCCcccceEEEE---EecCCCCEEEEEEcCC-CCEEEEEeC--C-----CeEEEEEcCCCeE-----
Q 040062 96 KPGSGTTEFGSGEPPDIENWKVAMT---LRGHTADVVDLNWSPD-DSILASGSL--D-----NTIHIWNMSTGIC----- 159 (689)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~---l~~h~~~V~~l~~spd-g~~Lasgs~--D-----g~I~vwd~~~~~~----- 159 (689)
.++ .|..+.. +........++.+..+ +++++.|+. + +.+.+||+.+...
T Consensus 521 ~t~---------------~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~ 585 (695)
T 2zwa_A 521 TEE---------------IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPIT 585 (695)
T ss_dssp TTT---------------EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEE
T ss_pred CCC---------------ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceE
Confidence 765 2333332 1111111233455544 667777765 2 4689999988761
Q ss_pred EEEEec---CCCCeEEEEEccCCCEEEEEeC--------CCeEEEEECCCCcc
Q 040062 160 TAVLRG---HSSLVKGVAWDPIGSFIASQSD--------DKTVIIWRTSDWSL 201 (689)
Q Consensus 160 ~~~l~~---h~~~V~~l~~spdg~~las~s~--------Dg~I~iwd~~~~~~ 201 (689)
...+.. ....-.+++...++++++.|+. ...|.+||..+.+-
T Consensus 586 W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W 638 (695)
T 2zwa_A 586 VIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETL 638 (695)
T ss_dssp EEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEE
T ss_pred EEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeE
Confidence 122211 1111112333334677777763 24588888876543
No 350
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=87.49 E-value=28 Score=35.82 Aligned_cols=86 Identities=10% Similarity=0.030 Sum_probs=54.7
Q ss_pred eEEEEEcCCC--eEEEEEecC------CCCeEEEEEc---cC----CCEEEEEe-CCCeEEEEECCCCcceeeccCcccc
Q 040062 148 TIHIWNMSTG--ICTAVLRGH------SSLVKGVAWD---PI----GSFIASQS-DDKTVIIWRTSDWSLAHRTDGHWAK 211 (689)
Q Consensus 148 ~I~vwd~~~~--~~~~~l~~h------~~~V~~l~~s---pd----g~~las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~ 211 (689)
.|.+||+.+. +.++.+.-. .+.+..+.++ |. +.++..+. ....|.+||+.+++.-+.....+..
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 6889999999 888887532 3567888888 22 33444443 4678999999987765544322111
Q ss_pred cC-------C-----cccEEEEEEcCC----CCeEEEe
Q 040062 212 SL-------G-----STFFRRLGWSPC----GHFITTT 233 (689)
Q Consensus 212 ~~-------~-----~~~i~~l~~spd----g~~l~~~ 233 (689)
.. + ...+..++++|+ ++.|+..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~ 241 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYL 241 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEE
Confidence 10 0 123677888887 6666654
No 351
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.84 E-value=22 Score=34.91 Aligned_cols=144 Identities=15% Similarity=0.038 Sum_probs=69.6
Q ss_pred eEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Q 040062 15 QIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHE 94 (689)
Q Consensus 15 ~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~iwd 94 (689)
.|..|+.......++ . ||.|+.|-........ .. ......|..|+...+- .++. . ||.|..|-
T Consensus 25 ~i~~ia~G~~h~~~l--~-~G~v~~wG~n~~Gqlg-------~p----~~~~~~i~~ia~G~~h-s~~l-~-~G~v~~wG 87 (282)
T 3qhy_B 25 GVDAIAGGYFHGLAL--K-GGKVLGWGANLNGQLT-------MP----AATQSGVDAIAAGNYH-SLAL-K-DGEVIAWG 87 (282)
T ss_dssp SCCEEEECSSEEEEE--E-TTEEEEEECCSSSTTS-------CC----GGGGSCCCEEEECSSE-EEEE-E-TTEEEEEE
T ss_pred CCcEEEeCCCeEEEE--E-CCEEEEEeCCCCCCCC-------CC----ccCCCCEEEEEeCCCE-EEEE-E-CCEEEEee
Confidence 466666554433333 4 7899999765421100 00 0112245666655332 2333 4 88888887
Q ss_pred cCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEE
Q 040062 95 KKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVA 174 (689)
Q Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~ 174 (689)
........ .+.. -...|..++...+ +.+.-. ||.|+.|-....-.+..-......|..|+
T Consensus 88 ~n~~Gqlg-----~P~~------------~~~~v~~ia~G~~--hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~ 147 (282)
T 3qhy_B 88 GNEDGQTT-----VPAE------------ARSGVDAIAAGAW--ASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALD 147 (282)
T ss_dssp CCTTSTTC-----CCGG------------GSSSEEEEEEETT--EEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEE
T ss_pred CCCCCCCC-----CCcc------------cCCCeEEEECcCC--EEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEE
Confidence 65432110 0100 1235777766533 333334 88899886544211111111224465555
Q ss_pred EccCCCEEEEEeCCCeEEEEECCC
Q 040062 175 WDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 175 ~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.-.. +.+.-. ||.|..|-...
T Consensus 148 ~G~~--~~~~l~-~G~v~~wG~n~ 168 (282)
T 3qhy_B 148 GGVY--TALAVK-NGGVIAWGDNY 168 (282)
T ss_dssp ECSS--EEEEEE-TTEEEEEECCT
T ss_pred cccC--EEEEEE-CCEEEEecCCC
Confidence 4322 222233 67888886544
No 352
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=83.12 E-value=44 Score=34.20 Aligned_cols=68 Identities=12% Similarity=0.010 Sum_probs=36.5
Q ss_pred CCEEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCeEEEEEec-----C--------CCCeEEEEEccC-CCEEEEEeCCCe
Q 040062 126 ADVVDLNWSPD-DSILASGSLDNTIHIWNMSTGICTAVLRG-----H--------SSLVKGVAWDPI-GSFIASQSDDKT 190 (689)
Q Consensus 126 ~~V~~l~~spd-g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-----h--------~~~V~~l~~spd-g~~las~s~Dg~ 190 (689)
..+.+|.+.|. ...|+.+..++.|...+- .++....+.. + ...+.+|.++|. ...|+.+...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g- 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG- 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-
Confidence 45889999874 345555554554544432 2222222211 0 124889999986 35666666544
Q ss_pred EEEEE
Q 040062 191 VIIWR 195 (689)
Q Consensus 191 I~iwd 195 (689)
|...+
T Consensus 255 l~~s~ 259 (394)
T 3b7f_A 255 IYRMD 259 (394)
T ss_dssp EEEEE
T ss_pred EEEeC
Confidence 44443
No 353
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=82.54 E-value=23 Score=39.83 Aligned_cols=65 Identities=6% Similarity=-0.002 Sum_probs=38.5
Q ss_pred CCCCEEEEEeCC----CeEEEEEcCCCeEEEEE-e-----cCC-CCeEEEEEcc-CCCEEEEEeCC------CeEEEEEC
Q 040062 135 PDDSILASGSLD----NTIHIWNMSTGICTAVL-R-----GHS-SLVKGVAWDP-IGSFIASQSDD------KTVIIWRT 196 (689)
Q Consensus 135 pdg~~Lasgs~D----g~I~vwd~~~~~~~~~l-~-----~h~-~~V~~l~~sp-dg~~las~s~D------g~I~iwd~ 196 (689)
.++.+++.|+.+ ..+.+||..+.+....- . ... ..-.+++... ++++++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 467777777753 46889999887654433 1 011 1112333333 67777777643 25788998
Q ss_pred CCC
Q 040062 197 SDW 199 (689)
Q Consensus 197 ~~~ 199 (689)
.+.
T Consensus 476 ~t~ 478 (695)
T 2zwa_A 476 KTR 478 (695)
T ss_dssp TTT
T ss_pred CCC
Confidence 774
No 354
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=81.29 E-value=86 Score=36.61 Aligned_cols=38 Identities=8% Similarity=-0.012 Sum_probs=32.9
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeecc
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTD 206 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~ 206 (689)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 46677778888999999999999999999999887654
No 355
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=81.04 E-value=10 Score=41.00 Aligned_cols=122 Identities=9% Similarity=0.034 Sum_probs=74.6
Q ss_pred ceEEEEEEcCCCCEEEEEeC-CCeEEEEeCCcCCCCCCCCc--ccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQPGALRFATGGG-DHKVRIWNMKSVGKNFENDE--STQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~-Dg~V~IWd~~~~~~~~~~~~--~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..-..+.++|||+++++++. +.+|.++|++.....+.... ...........- -.-...+|.++|....|.-.|..|
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G-lGPlHt~Fd~~G~aYTtlfidSqv 401 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG-LGPLHTTFDGRGNAYTTLFIDSQV 401 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC-SCEEEEEECSSSEEEEEETTTTEE
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC-CcccEEEECCCCceEeeeeecceE
Confidence 34567899999999988775 78999999985322111110 111222233322 245778999999666666789999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEE------cCCCCEEEEEe
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNW------SPDDSILASGS 144 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~------spdg~~Lasgs 144 (689)
.-|++... ...+... ..+..+..+.-|-.. -.+.- .+||++|++..
T Consensus 402 vkWni~~a--~~~~~g~-----~~~~v~~k~dv~Yqp-GH~~~~~get~~~dGk~lv~ln 453 (638)
T 3sbq_A 402 VKWNMEEA--VRAYKGE-----KVNYIKQKLDVHYQP-GHLHASLCETNEADGKWLVALS 453 (638)
T ss_dssp EEEEHHHH--HHHHTTC-----CCCCEEEEEECSSCE-EEEEETTTTSTTCCSCEEEEEE
T ss_pred EEEeccHH--HHHhcCc-----cCCeeeeccccccCC-cccccCCCccCCCCccEEEEec
Confidence 99999753 1111100 113566666666543 33333 56889998875
No 356
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=73.06 E-value=21 Score=36.14 Aligned_cols=113 Identities=9% Similarity=0.040 Sum_probs=68.7
Q ss_pred CEEEEEeCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC-CCCEEEEEE---cCCCCEEEEE-eCCCeEEEEE
Q 040062 79 RYIASGSDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH-TADVVDLNW---SPDDSILASG-SLDNTIHIWN 153 (689)
Q Consensus 79 ~~Lasgs~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h-~~~V~~l~~---spdg~~Lasg-s~Dg~I~vwd 153 (689)
.+++.++.||.|.-+|..+++ ..-.+... ..++....- ..++..++.. +.||.|..+|
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~-----------------~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~ 73 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGH-----------------IIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFN 73 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTE-----------------EEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCc-----------------EEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEE
Confidence 367888899999999988873 33333322 011111100 0122333333 5899999999
Q ss_pred cCCCeEEEEEec----CCCCeEE---EEE-cc----CCCEEEEEeCCCeEEEEECCCCcceeeccCc
Q 040062 154 MSTGICTAVLRG----HSSLVKG---VAW-DP----IGSFIASQSDDKTVIIWRTSDWSLAHRTDGH 208 (689)
Q Consensus 154 ~~~~~~~~~l~~----h~~~V~~---l~~-sp----dg~~las~s~Dg~I~iwd~~~~~~~~~~~~~ 208 (689)
..+|.....+.. ..+++.. ... ++ .+..+++++.++.+...|+++++.+..+...
T Consensus 74 ~~~G~~~~~~~~~~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 74 AHQGLQKLPLSIRQLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp TTTEEEEEEEEHHHHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred CCCCcEEeeeccccceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 988866554432 2223221 000 01 4567889999999999999999999888654
No 357
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=70.66 E-value=87 Score=31.04 Aligned_cols=171 Identities=14% Similarity=0.072 Sum_probs=96.2
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCccccee---eeeecCCCCcEEEEEEcC---CCCEEEEEeCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRL---LATLRDHFGSVNCVRWAK---HGRYIASGSDD 87 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~---~~~l~~h~~~V~~v~fsp---dg~~Lasgs~D 87 (689)
+.+..+........++..+..|.++-+........... ..+.. .-.+.. ...|.++...+ +..+|+..+.+
T Consensus 47 D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r~--~~G~~i~~~l~l~~-~e~i~~~~~~~~~~~~~~ll~~T~~ 123 (312)
T 1suu_A 47 DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSRA--SKGQNISELINLGD-QEEILTIKNSKDLTDDAYLLLTTAS 123 (312)
T ss_dssp CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---------CBGGGTSCCCT-TCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCcc--CCCcChhhccCCCC-CCEEEEEEEeccCCCCCEEEEEeCC
Confidence 34555555555566777788888887776543211000 01111 112322 23344443332 46788889999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------Ce
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---------GI 158 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---------~~ 158 (689)
|.++...+..-.... ........+.. ...+..+....++..++..+.+|.+..+.... |.
T Consensus 124 G~~kr~~l~~~~~~r----------~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv 192 (312)
T 1suu_A 124 GKIARFESTDFKAVK----------SRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGV 192 (312)
T ss_dssp SEEEEEEGGGGCC--------------CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCE
T ss_pred CeEEEEEHHHhhccC----------CCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCe
Confidence 999998875431110 00012223333 34555555555566788889999999998753 22
Q ss_pred EEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
....+. ....|.++..-.++..|++.+..|..+..++...
T Consensus 193 ~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~ 232 (312)
T 1suu_A 193 CGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKI 232 (312)
T ss_dssp ECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGS
T ss_pred EeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHh
Confidence 222333 2455666655555667888888999888887543
No 358
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=68.66 E-value=1.8e+02 Score=33.88 Aligned_cols=39 Identities=18% Similarity=0.395 Sum_probs=34.3
Q ss_pred CCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 126 ADVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
..+.+++..++..++++-+.|+++++|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 357888888888999999999999999999999988753
No 359
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=67.79 E-value=1.6e+02 Score=32.99 Aligned_cols=56 Identities=13% Similarity=0.069 Sum_probs=35.1
Q ss_pred CCCcEEEEeCCCC-------CceEE-ecccCCCCeEEEEEccCCCeEEEEeCCCc--EEEEEeeccc
Q 040062 314 QDRTITVWTTASP-------RPLFV-AKHFFTQSVVDLSWSPDGYSLFACSLDGT--VANFHFEVKE 370 (689)
Q Consensus 314 ~Dg~I~iwd~~~~-------~~~~~-~~~~h~~~V~~l~~spdg~~L~sgs~DG~--I~vwd~~~~~ 370 (689)
..+.|.+.|+.++ ..... +.......+..+.|..+ .++++...++. |+++++.+++
T Consensus 318 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~~~~l~~~~~~~g~ 383 (711)
T 4hvt_A 318 KAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNVVAKVVTFTLENEQ 383 (711)
T ss_dssp CTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETTEEEEEEECEETTE
T ss_pred CCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECCEEEEEEEECCCCc
Confidence 4577888888763 12222 33333556888999876 56667777775 5666666554
No 360
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=66.10 E-value=1.1e+02 Score=30.53 Aligned_cols=170 Identities=11% Similarity=-0.031 Sum_probs=96.7
Q ss_pred ceEEEEEEcC---CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQP---GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~sp---dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..|.++..-. +..++++.+.+|.|+.-.+....... ..+.....+.. ...+..+........|+..+..|.+
T Consensus 95 e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~----r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 95 ERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNR----SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQS 169 (327)
T ss_dssp CCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCC----SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccc----cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeE
Confidence 4566654433 57899999999999999877522111 11333334444 3445555555556678888889999
Q ss_pred EEEEcC--CCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeE-------EE
Q 040062 91 LIHEKK--PGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGIC-------TA 161 (689)
Q Consensus 91 ~iwdl~--~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~-------~~ 161 (689)
..+... .-.....-. .......+. ....|.++....++.+|+.++..|.++.-.+..... +.
T Consensus 170 ~rf~~~~~eip~~gr~a--------~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~ 240 (327)
T 3uc1_A 170 IRFSATDEALRPMGRAT--------SGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVL 240 (327)
T ss_dssp EEEECCTTTSCCCCTTS--------BCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred EEEECcccccCcCCcCC--------CCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEE
Confidence 888876 321110000 001111222 234566666666677899999999999888654221 12
Q ss_pred E--EecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECC
Q 040062 162 V--LRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTS 197 (689)
Q Consensus 162 ~--l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~ 197 (689)
. +..-.+.+..+....+...++..+.+|.+.-++..
T Consensus 241 ~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 241 TVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp SSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred EEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 1 22213345444443344556666667777666654
No 361
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=64.48 E-value=79 Score=37.83 Aligned_cols=39 Identities=8% Similarity=-0.049 Sum_probs=31.9
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
.+.+++..++..++++-+.|+++|||++.+++++.+...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL 277 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 277 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEEC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeech
Confidence 344556667889999999999999999999998877543
No 362
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=61.63 E-value=1.4e+02 Score=30.22 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=34.9
Q ss_pred CEEEEEEcCC--CCEEEEEeCCCeEEEEEcCCCeEEEEEec-------------------CCCCeEEEEEccC-CCEEEE
Q 040062 127 DVVDLNWSPD--DSILASGSLDNTIHIWNMSTGICTAVLRG-------------------HSSLVKGVAWDPI-GSFIAS 184 (689)
Q Consensus 127 ~V~~l~~spd--g~~Lasgs~Dg~I~vwd~~~~~~~~~l~~-------------------h~~~V~~l~~spd-g~~las 184 (689)
.|.+|++.|. ...|.++...+.|...+- .++.-..+.. ....|.+|.++|. ...|+.
T Consensus 116 ~i~~l~~~~~~~~~~l~~g~~~ggl~~S~D-gG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v 194 (394)
T 3b7f_A 116 HVFWLTPGHASEPGTWYAGTSPQGLFRSTD-HGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI 194 (394)
T ss_dssp EEEEEEECCTTSTTCEEEEEETTEEEEESS-TTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE
T ss_pred ceeEEEeCCCCCCCEEEEEecCCcEEEEcC-CCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE
Confidence 5788999872 455666666666665532 2222222210 1245789999983 344444
Q ss_pred EeCCCeEE
Q 040062 185 QSDDKTVI 192 (689)
Q Consensus 185 ~s~Dg~I~ 192 (689)
+..++.|.
T Consensus 195 g~~~ggl~ 202 (394)
T 3b7f_A 195 GMSSGGVF 202 (394)
T ss_dssp EEETBEEE
T ss_pred EECCCCEE
Confidence 44444443
No 363
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=61.60 E-value=1.3e+02 Score=29.75 Aligned_cols=129 Identities=14% Similarity=0.034 Sum_probs=77.2
Q ss_pred ceEEEEEEcC---CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQP---GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~sp---dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
+.|.++..-+ +..+|+..+.+|.++...+...... ...+.....+.. .+.+..+....+...|+..+.+|.+
T Consensus 100 e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~----r~~G~~~i~L~~-~d~lv~~~~~~~~~~i~l~T~~G~~ 174 (312)
T 1suu_A 100 EEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV----KSRGVIVIKLND-KDFVTSAEIVFKDEKVICLSKKGSA 174 (312)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC--------CEECBCCCT-TCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc----CCCcEEEEecCC-CCEEEEEEEeCCCCEEEEEeCCCcE
Confidence 3455554432 4567888899999999988753211 122344444554 4566666665556678888999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST 156 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~ 156 (689)
..+....-.....-. .......+.. ...|..+..-.++..|++.+..|..+..++..
T Consensus 175 ~r~~~~ev~~~gR~~--------~Gv~~i~L~~-~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e 231 (312)
T 1suu_A 175 FIFNSRDVRLTNRGT--------QGVCGMKLKE-GDLFVKVLSVKENPYLLIVSENGYGKRLNMSK 231 (312)
T ss_dssp EEEEGGGSCBCCTTB--------CCEECCCCCT-TCCEEEEEECTTCSEEEEEETTSEEEEEEGGG
T ss_pred EEEEHHHccccCCCC--------CCeEeEEeCC-CCEEEEEEEECCCCeEEEEECCCceEEEEHHH
Confidence 999876421110000 0022222332 34456665555566788889999999998854
No 364
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=57.97 E-value=1.7e+02 Score=29.93 Aligned_cols=204 Identities=10% Similarity=0.073 Sum_probs=112.7
Q ss_pred ceEEEEEEcCCCCEEEEEeC---------------CCeEEEEeCCcCCCCCCCCcccc--eeeeeecC------CCCcEE
Q 040062 14 MQIFSIDVQPGALRFATGGG---------------DHKVRIWNMKSVGKNFENDESTQ--RLLATLRD------HFGSVN 70 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~---------------Dg~V~IWd~~~~~~~~~~~~~~~--~~~~~l~~------h~~~V~ 70 (689)
-.|+.+.+.+++++.+.=+. --+|.+||+.+ . +.++++.- ....++
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t-----------~~~~li~~y~~p~~~~~~~S~l~ 155 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQ-----------PNYPEVVRYYFPTRLVEKPTYFG 155 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSS-----------TTCCEEEEEECCGGGCCCGGGEE
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCC-----------CCceeEEEEECCHHhcccCCccc
Confidence 37999999998876554221 12688999987 4 55555432 234688
Q ss_pred EEEEc---CC----CCEEEEE-eCCCeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecC----CCCEEEEEEcCC--
Q 040062 71 CVRWA---KH----GRYIASG-SDDQVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGH----TADVVDLNWSPD-- 136 (689)
Q Consensus 71 ~v~fs---pd----g~~Lasg-s~Dg~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h----~~~V~~l~~spd-- 136 (689)
.+++. ++ +.+...+ +...-|.|+|+.++..-......-.++ . .....+.+. ...|..|+++|+
T Consensus 156 di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd-~--~~~~~i~G~~~~~~~Gi~gIaLsp~~~ 232 (381)
T 3q6k_A 156 GFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAE-R--PTKFDYGGKEYEFKAGIFGITLGDRDS 232 (381)
T ss_dssp EEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCC-S--CEEEEETTEEEEECCCEEEEEECCCCT
T ss_pred eEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccc-c--CcceEECCEEeEeccCceEEEecCCcC
Confidence 88887 22 2333333 346789999999874321110000000 0 011111121 246899999998
Q ss_pred --CCEEEEEeCCC-eEEEEE---cCCC---eEEEEE--ecCCCCeEEEEEc-cCCCEEEEEeCCCeEEEEECCCCc----
Q 040062 137 --DSILASGSLDN-TIHIWN---MSTG---ICTAVL--RGHSSLVKGVAWD-PIGSFIASQSDDKTVIIWRTSDWS---- 200 (689)
Q Consensus 137 --g~~Lasgs~Dg-~I~vwd---~~~~---~~~~~l--~~h~~~V~~l~~s-pdg~~las~s~Dg~I~iwd~~~~~---- 200 (689)
++.|......+ .+.--. +++. ..+..+ ++..+.-..++++ .+|.++++--....|..|+..+..
T Consensus 233 ~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~ 312 (381)
T 3q6k_A 233 EGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMK 312 (381)
T ss_dssp TSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTSCSBCGG
T ss_pred CCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCCCccccC
Confidence 67777766554 233222 1111 112222 2212344456776 578888888888899999987511
Q ss_pred ceeeccCcccccCCcccEEEEEEcCCCCeEEEecC
Q 040062 201 LAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHG 235 (689)
Q Consensus 201 ~~~~~~~~~~~~~~~~~i~~l~~spdg~~l~~~~~ 235 (689)
....+... ....+...+.+..+|...+.++.
T Consensus 313 n~~~l~~d----~~l~~pd~~~i~~~g~Lwv~sn~ 343 (381)
T 3q6k_A 313 NTDVVYTS----SRFVFGTDISVDSKGGLWFMSNG 343 (381)
T ss_dssp GEEEEEEC----TTCCSEEEEEECTTSCEEEEECS
T ss_pred ceEEEEEC----CCccccCeEEECCCCeEEEEECc
Confidence 11111111 12345778888888876666654
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=56.69 E-value=1.6e+02 Score=29.09 Aligned_cols=171 Identities=12% Similarity=0.024 Sum_probs=94.2
Q ss_pred ceEEEEEEc---CCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQ---PGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~s---pdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..|.++..- .++.+++..+.+|.++.-.+...... ...+.....+..+ +.+..+....+...|+..+.+|.+
T Consensus 95 e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~----~r~G~~~i~l~~~-d~lv~~~~~~~~~~i~l~T~~G~~ 169 (307)
T 1zi0_A 95 ERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL----RTAGKVAIKLVDG-DELIGVDLTSGEDEVMLFSAEGKV 169 (307)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC----CTTCEESSCCCTT-CCEEEEEEECTTCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc----ccCCeEEEEECCC-CEEEEEEEeCCCCEEEEECCCCcE
Confidence 456666442 35667888999999999987642211 1123333344444 556565555555677778888988
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCe---------EEE
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTGI---------CTA 161 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~---------~~~ 161 (689)
..+....-........ ......+. ....|..+....++..|+..+..|.++-.++.... ...
T Consensus 170 irf~~~~v~~~gr~a~--------Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~ 240 (307)
T 1zi0_A 170 VRFKESSVRAMGCNTT--------GVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISI 240 (307)
T ss_dssp EEEEGGGSCBCCTTCC--------CEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESS
T ss_pred EEEEHHHcCccCCCCC--------CeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEee
Confidence 8887754221100000 01111222 23456666555556678888999999988874321 111
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.+....+.+..+....+...|+..+.+|.+.-++...
T Consensus 241 ~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 241 KVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred EecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 2222234554444433344455566666666665543
No 366
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=56.12 E-value=1.8e+02 Score=29.62 Aligned_cols=128 Identities=13% Similarity=0.002 Sum_probs=69.7
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeee---eecCCCCcEEEEE-Ec--CCCCEEEEEeCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA---TLRDHFGSVNCVR-WA--KHGRYIASGSDD 87 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~---~l~~h~~~V~~v~-fs--pdg~~Lasgs~D 87 (689)
+.+..+........|+..+..|.++-+........... ..+..+. .+. ....|.++. +. .++.+|+.++..
T Consensus 46 D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~r~--a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 122 (370)
T 3l6v_A 46 DFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAGSN--ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRN 122 (370)
T ss_dssp CCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTT--SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETT
T ss_pred CEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCCcc--cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCC
Confidence 45555555555666777777788877765543211100 1122222 233 234455544 33 245699999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS 155 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~ 155 (689)
|.++...+..-..... .......+.. ...+..+....+...|+..+.+|.+..++..
T Consensus 123 G~vKrt~l~e~~~~~~----------~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~irf~~~ 179 (370)
T 3l6v_A 123 GTVKKTPLSEFAFRLA----------RGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKTVRFGES 179 (370)
T ss_dssp SEEEEEEGGGGCSCCT----------TCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEEEEEEGG
T ss_pred CeEEEeEHHHhhcccC----------CceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeEEEEEcc
Confidence 9999988754321100 0011222332 3344444444455678888888988888764
No 367
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=54.25 E-value=1.6e+02 Score=28.50 Aligned_cols=169 Identities=8% Similarity=-0.038 Sum_probs=96.6
Q ss_pred CceEEEEEEcC-CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeEE
Q 040062 13 GMQIFSIDVQP-GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVIL 91 (689)
Q Consensus 13 g~~I~si~~sp-dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I~ 91 (689)
+..|.++-... +..+++..+.+|.|+...+.... . ...+.....+.. ...+..+....+...|+..+..|.+.
T Consensus 67 ~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~----~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~ 140 (276)
T 3no0_A 67 EEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-Y----KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVA 140 (276)
T ss_dssp TCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-T----CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEE
T ss_pred CCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-h----hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEE
Confidence 35677765421 56789999999999999987532 0 111333333443 34555665555666888888999988
Q ss_pred EEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-------eEEEEEe
Q 040062 92 IHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMSTG-------ICTAVLR 164 (689)
Q Consensus 92 iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~-------~~~~~l~ 164 (689)
.+....-.....-..+ .....+.. ...|..+....++.+|+..+..|.++...+... +-+..+
T Consensus 141 r~~~~eip~~gR~a~G--------v~~i~L~~-~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i- 210 (276)
T 3no0_A 141 RFSVREVPPSTPGARG--------VQGIKLEK-NDETSGLRIWNGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVS- 210 (276)
T ss_dssp EEEGGGSCBCCTTCCC--------EECCCCCT-TCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECC-
T ss_pred EEEhhhCCCcCCCCCC--------EEEEccCC-CCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEE-
Confidence 8876543211000000 11112322 244655555556678899999999999987532 122222
Q ss_pred cCCCCeEEEEEccCCCEEEEEeCCCeEEE--EECC
Q 040062 165 GHSSLVKGVAWDPIGSFIASQSDDKTVII--WRTS 197 (689)
Q Consensus 165 ~h~~~V~~l~~spdg~~las~s~Dg~I~i--wd~~ 197 (689)
...+.+..+....+...++..+.+|.+.. ++..
T Consensus 211 ~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~ 245 (276)
T 3no0_A 211 GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQK 245 (276)
T ss_dssp CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGG
T ss_pred cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHH
Confidence 23344544433333345666667777766 7654
No 368
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=54.15 E-value=1.2e+02 Score=29.53 Aligned_cols=66 Identities=24% Similarity=0.155 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 127 DVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
.|..++...+. .++. .||.|+.|=....-.+..-......|..|+--... .++.. ||.|..|=...
T Consensus 181 ~v~~i~~G~~h-s~al--~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 181 GVDDVAGGIFH-SLAL--KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIAWGSSR 246 (282)
T ss_dssp SEEEEEECSSE-EEEE--ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEEESTTC
T ss_pred CeEEEEecCCE-EEEE--ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEEecCCC
Confidence 45555543222 2222 46777777543321111000111335555443222 22222 67777775544
No 369
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=47.66 E-value=50 Score=36.18 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=43.5
Q ss_pred EEEEEEcCCCCEEEEEeCC------------CeEEEEEcCCCeEEEEEecCC-CCeEEEEEccCCCEEEEE
Q 040062 128 VVDLNWSPDDSILASGSLD------------NTIHIWNMSTGICTAVLRGHS-SLVKGVAWDPIGSFIASQ 185 (689)
Q Consensus 128 V~~l~~spdg~~Lasgs~D------------g~I~vwd~~~~~~~~~l~~h~-~~V~~l~~spdg~~las~ 185 (689)
.--|+|+++|.++++-..+ +.+.+.+..+++....+.++. ..+++++|+||++.|++.
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 4568999999866654322 346777778888877777654 789999999999887765
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=45.86 E-value=3.5e+02 Score=30.58 Aligned_cols=149 Identities=10% Similarity=0.016 Sum_probs=73.1
Q ss_pred ceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCC-------CCcEEEEEEcCC-CCEEEEE
Q 040062 14 MQIFSIDVQPGA-LRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDH-------FGSVNCVRWAKH-GRYIASG 84 (689)
Q Consensus 14 ~~I~si~~spdg-~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h-------~~~V~~v~fspd-g~~Lasg 84 (689)
..|.+|.++|.. ..+.+++..+.|...+=. ++.-..+..+ ...|.+|+++|. ...+..+
T Consensus 15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~Dg------------G~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~ 82 (789)
T 1sqj_A 15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAG------------TSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLA 82 (789)
T ss_dssp SCEEEEEECSSSTTCEEEEESSSCEEEEETT------------TTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEE
T ss_pred CcEEEEEECCCCCCEEEEEecCCCEEEecCC------------CCCeeECccCCCcccccCCceeEEEECCCCCCEEEEE
Confidence 489999999963 556666666666554421 1111222221 246999999984 3344443
Q ss_pred eCCCe----EEEEEcCCCCCccccCCCCCCCcccceEEEEEec------CCCCEEEEEEcCCC-CEEEEEeCCCeEEEEE
Q 040062 85 SDDQV----ILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRG------HTADVVDLNWSPDD-SILASGSLDNTIHIWN 153 (689)
Q Consensus 85 s~Dg~----I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~------h~~~V~~l~~spdg-~~Lasgs~Dg~I~vwd 153 (689)
..+.. -.||.-..+ -..|+.+..-.. ....+..|+++|.. ..++.+...+.|. ..
T Consensus 83 ~g~~~~~~~~~v~~S~Dg-------------G~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S 148 (789)
T 1sqj_A 83 QGRYVGDEWAAFYVSEDR-------------GQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KS 148 (789)
T ss_dssp ECSCTTSSCCEEEEESST-------------TSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EE
T ss_pred eCccCCCcccEEEEECCC-------------CCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EE
Confidence 32211 334433322 134555432100 01135667887753 3555555344332 12
Q ss_pred cCCCeEEEEEec------CCCCeEEEEEccC-CCEEEEEeCC
Q 040062 154 MSTGICTAVLRG------HSSLVKGVAWDPI-GSFIASQSDD 188 (689)
Q Consensus 154 ~~~~~~~~~l~~------h~~~V~~l~~spd-g~~las~s~D 188 (689)
...++.-..+.. ....+..|.++|. +..++.+..+
T Consensus 149 ~DgG~TW~~~~~~~~~~~~~~~~~~i~~~p~~~~~~~~~~~~ 190 (789)
T 1sqj_A 149 SDRAKTWTNVTSIPDAFTNGIGYTSVIFDPERNGTIYASATA 190 (789)
T ss_dssp SSTTSSCEEETTSCCCCSTTTCEEEEEECTTSTTCEEEEESS
T ss_pred CCCCcccCCCccCccccCCCCCeEEEEECCCCCCEEEEEEcC
Confidence 222322222221 1245788999884 4455555544
No 371
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=42.90 E-value=33 Score=41.13 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=32.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEe
Q 040062 127 DVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLR 164 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~ 164 (689)
.+.+++..++..+|++-+.|++++||++.+++++.+..
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45666777788999999999999999999999988764
No 372
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=42.36 E-value=94 Score=33.77 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=44.8
Q ss_pred CCEEEEEEcCCCCEEEEEeC------------CCeEEEEEcCCCeEEEEEecC-CCCeEEEEEccCCCEEEEEe
Q 040062 126 ADVVDLNWSPDDSILASGSL------------DNTIHIWNMSTGICTAVLRGH-SSLVKGVAWDPIGSFIASQS 186 (689)
Q Consensus 126 ~~V~~l~~spdg~~Lasgs~------------Dg~I~vwd~~~~~~~~~l~~h-~~~V~~l~~spdg~~las~s 186 (689)
.....|.|.++|.+.++... .+.|..++..+++....+... ...+++++|+||++.|++.-
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 34678999999987764321 226777888888877766643 46789999999999887764
No 373
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=41.12 E-value=2.8e+02 Score=27.49 Aligned_cols=172 Identities=11% Similarity=0.008 Sum_probs=91.9
Q ss_pred ceEEEEE-EcC--CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSID-VQP--GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~-~sp--dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..|.++. +.. ++.+|+..+.+|.++...+........ ..+.....+... +.+..+........|+..+.+|.+
T Consensus 92 e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r---~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~ 167 (323)
T 1wp5_A 92 EEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY---SKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYA 167 (323)
T ss_dssp CCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC---SSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEE
T ss_pred CEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc---cCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcE
Confidence 4566553 332 256888999999999998875221110 123333334433 556666665556678888889999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCC-EEEEEeCCCeEEEEEcCCC-------eEEEE
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDS-ILASGSLDNTIHIWNMSTG-------ICTAV 162 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~-~Lasgs~Dg~I~vwd~~~~-------~~~~~ 162 (689)
..+....-....... .......+. ....|.++....++. .|+..+..|..+..++... +-+..
T Consensus 168 irf~~~ev~~~gR~a--------~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~ 238 (323)
T 1wp5_A 168 LWFDESEVSIVGVRA--------AGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVI 238 (323)
T ss_dssp EEEEGGGSCBCCSSC--------CCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEEC
T ss_pred EEEEHHHCcccCCCC--------cCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEEC
Confidence 888876421110000 001122222 233455554434444 7888888998888877541 11222
Q ss_pred Ee---cCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCC
Q 040062 163 LR---GHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 163 l~---~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~ 198 (689)
++ .....+.++....++..++..+.+|.+....+..
T Consensus 239 ~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 239 LRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp SCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred eeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence 21 1222444333223344555666667666666543
No 374
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=40.44 E-value=2.8e+02 Score=27.41 Aligned_cols=171 Identities=8% Similarity=-0.018 Sum_probs=91.5
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeee---eecCCCCcEEEE-EEcC--CCCEEEEEeCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLA---TLRDHFGSVNCV-RWAK--HGRYIASGSDD 87 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~---~l~~h~~~V~~v-~fsp--dg~~Lasgs~D 87 (689)
+.+..+........|+..+..|.++-+........... ..+..+. .+. ....|.++ .... ++.+|+..+.+
T Consensus 39 D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~--a~G~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~ 115 (323)
T 1wp5_A 39 DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWK--DLGQHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRN 115 (323)
T ss_dssp CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTT--SCCEEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETT
T ss_pred CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCC--CCCcChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCC
Confidence 34555555555566777777888777766543221110 1122221 222 22345544 3432 36789999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------Ce
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---------GI 158 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---------~~ 158 (689)
|.++...+..-..... ........+... ..+..+....+...|+..+.+|.+..++... |.
T Consensus 116 G~iKrt~l~e~~~~~r---------~~G~~ai~l~e~-d~lv~~~~~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV 185 (323)
T 1wp5_A 116 GMVKKTELKHYKAQRY---------SKPLTGINLKND-DQVVDVHLTDGMNELFLVTHNGYALWFDESEVSIVGVRAAGV 185 (323)
T ss_dssp SEEEEEEGGGGCCSCC---------SSCEECSCCCTT-CCEEEEEEECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCE
T ss_pred CeEEEeEHHHhhhccc---------cCceEEEEeCCC-CEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCE
Confidence 9999988753211100 000111222222 4455554544556788888899998887643 11
Q ss_pred EEEEEecCCCCeEEEEEccCCC-EEEEEeCCCeEEEEECCC
Q 040062 159 CTAVLRGHSSLVKGVAWDPIGS-FIASQSDDKTVIIWRTSD 198 (689)
Q Consensus 159 ~~~~l~~h~~~V~~l~~spdg~-~las~s~Dg~I~iwd~~~ 198 (689)
....+. ....|.++...+++. .|++.+..|..+..++..
T Consensus 186 ~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 186 KGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp ECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 222222 234555554444444 677777888877766643
No 375
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=36.98 E-value=70 Score=35.79 Aligned_cols=37 Identities=11% Similarity=0.302 Sum_probs=29.9
Q ss_pred CeEEEEEccCCCEEEEEeCCCeEEEEECCCCcceeeccC
Q 040062 169 LVKGVAWDPIGSFIASQSDDKTVIIWRTSDWSLAHRTDG 207 (689)
Q Consensus 169 ~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~~~~~~~~ 207 (689)
.|.++.+ +..++++-+.|.++|+|++++++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 3555554 478999999999999999999998876654
No 376
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=36.96 E-value=2.9e+02 Score=26.56 Aligned_cols=167 Identities=9% Similarity=-0.014 Sum_probs=98.9
Q ss_pred cCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcC-CCCEEEEEeCCCeE
Q 040062 12 EGMQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAK-HGRYIASGSDDQVI 90 (689)
Q Consensus 12 ~g~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp-dg~~Lasgs~Dg~I 90 (689)
.|+.+.++.......+|+.-+.+|.++--........ ...-+ +. ....|..+.... +..+++..+.+|.+
T Consensus 22 ~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~------~~~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~i 92 (276)
T 3no0_A 22 EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQG------SKVSL--KS-REEKIVGAFIREKFGNRLLLATKKGYV 92 (276)
T ss_dssp SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTS------EECCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEE
T ss_pred CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccC------ccccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEE
Confidence 4566777776666667777778888776544321100 01112 33 345566664421 56799999999999
Q ss_pred EEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcCC---------CeEEE
Q 040062 91 LIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMST---------GICTA 161 (689)
Q Consensus 91 ~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~---------~~~~~ 161 (689)
+...+..-. ... .......+.. ...+..+....+...|+..+..|.+..++... |....
T Consensus 93 Kr~~l~~~~-~~~----------~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i 160 (276)
T 3no0_A 93 KKIPLAEFE-YKA----------QGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGI 160 (276)
T ss_dssp EEEEGGGTT-TCS----------TTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECC
T ss_pred EEEEHHHhh-hhc----------CCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEE
Confidence 999876532 000 0012222332 23455555555566788888999988887642 22222
Q ss_pred EEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCCc
Q 040062 162 VLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDWS 200 (689)
Q Consensus 162 ~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~~ 200 (689)
.+. ....|.++....++.+++..+..|.++...+....
T Consensus 161 ~L~-~~d~vv~~~~~~~~~~ll~~T~~G~~kr~~~~e~~ 198 (276)
T 3no0_A 161 KLE-KNDETSGLRIWNGEPYLLVITAKGRVKKISHEEIP 198 (276)
T ss_dssp CCC-TTCCEEEEEEESSCSEEEEEETTSCEEEEEGGGSC
T ss_pred ccC-CCCEEEEEEEeCCCCEEEEEeCCCcEEEeEHHHcc
Confidence 233 23556666555567788889999999988875543
No 377
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=35.44 E-value=3.7e+02 Score=27.23 Aligned_cols=79 Identities=5% Similarity=-0.046 Sum_probs=50.5
Q ss_pred ceEEEEEEcC---CCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeeeecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Q 040062 14 MQIFSIDVQP---GALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVI 90 (689)
Q Consensus 14 ~~I~si~~sp---dg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fspdg~~Lasgs~Dg~I 90 (689)
..|.++..-. +..+|+.++..|.++...+...... ...+.....+.. .+.+..+........|+..+.+|.+
T Consensus 99 e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~----~~~G~~ai~L~~-~d~lv~v~~~~~~~~i~l~T~~G~~ 173 (370)
T 3l6v_A 99 ERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFR----LARGKIAINLDE-GDALVGVALTDGDRDVLLFASNGKT 173 (370)
T ss_dssp CCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSC----CTTCEESSCCCT-TCCEEEEEEECSCCEEEEEETTSEE
T ss_pred CEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcc----cCCceEEEEeCC-CCEEEEEEEeCCCceEEEEeCCCeE
Confidence 4566655432 4568999999999999998753221 112333334443 4455555555556678888888988
Q ss_pred EEEEcCC
Q 040062 91 LIHEKKP 97 (689)
Q Consensus 91 ~iwdl~~ 97 (689)
..+....
T Consensus 174 irf~~~~ 180 (370)
T 3l6v_A 174 VRFGEST 180 (370)
T ss_dssp EEEEGGG
T ss_pred EEEEccc
Confidence 8887654
No 378
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=33.58 E-value=97 Score=33.89 Aligned_cols=39 Identities=21% Similarity=0.145 Sum_probs=28.3
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEE
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFAC 355 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sg 355 (689)
.+.+.+..+++....+.......++.++|+||++.|++.
T Consensus 510 ~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 355566666766655555556789999999999888765
No 379
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=32.70 E-value=3.8e+02 Score=26.55 Aligned_cols=171 Identities=8% Similarity=0.002 Sum_probs=95.4
Q ss_pred ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCcCCCCCCCCcccceeeee---ecCCCCcEEEE-EEcC--CCCEEEEEeCC
Q 040062 14 MQIFSIDVQPGALRFATGGGDHKVRIWNMKSVGKNFENDESTQRLLAT---LRDHFGSVNCV-RWAK--HGRYIASGSDD 87 (689)
Q Consensus 14 ~~I~si~~spdg~~Latgs~Dg~V~IWd~~~~~~~~~~~~~~~~~~~~---l~~h~~~V~~v-~fsp--dg~~Lasgs~D 87 (689)
+.+..+........|+.-+..|.++-........... ...+..+.. +. ....|.++ .+.. +..+++..+.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r--~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T~~ 118 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASR--TARGQHVANLLAFQ-PEERIAQVIQIRGYTDAPYLVLATRN 118 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCS--SSCCEEHHHHTTCC-TTCCEEEEEEESSTTSSSEEEEEETT
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCc--cCCCEEHHHccCCC-CCCEEEEEEEeccCCCCCEEEEEcCC
Confidence 3455555555555666666778777666543221100 012332222 22 23345554 3432 57899999999
Q ss_pred CeEEEEEcCCCCCccccCCCCCCCcccceEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCeEEEEEcC--C---------
Q 040062 88 QVILIHEKKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSILASGSLDNTIHIWNMS--T--------- 156 (689)
Q Consensus 88 g~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~Lasgs~Dg~I~vwd~~--~--------- 156 (689)
|.|+...+..-..... .......+... ..+..+........|+..+..|.+..+... .
T Consensus 119 G~iKr~~l~~~~~~~r----------~G~~~i~lke~-D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~ 187 (327)
T 3uc1_A 119 GLVKKSKLTDFDSNRS----------GGIVAVNLRDN-DELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATS 187 (327)
T ss_dssp SEEEEEEGGGGCCCCS----------SCEESCBCCTT-CCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSB
T ss_pred CEEEEeEHHHhhcccc----------CceEEEEECCC-CEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCC
Confidence 9999988765321100 00122223332 334444444455678888889998888776 2
Q ss_pred CeEEEEEecCCCCeEEEEEccCCCEEEEEeCCCeEEEEECCCC
Q 040062 157 GICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWRTSDW 199 (689)
Q Consensus 157 ~~~~~~l~~h~~~V~~l~~spdg~~las~s~Dg~I~iwd~~~~ 199 (689)
|.....+. ....|.++...+++.+|+..+..|.++.-.+...
T Consensus 188 Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~ 229 (327)
T 3uc1_A 188 GVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEY 229 (327)
T ss_dssp CEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGS
T ss_pred CeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHc
Confidence 11111222 3455666666666678888888998888776543
No 380
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=28.03 E-value=85 Score=35.10 Aligned_cols=37 Identities=8% Similarity=0.086 Sum_probs=30.7
Q ss_pred CEEEEEEcCCCCEEEEEeCCCeEEEEEcCCCeEEEEEec
Q 040062 127 DVVDLNWSPDDSILASGSLDNTIHIWNMSTGICTAVLRG 165 (689)
Q Consensus 127 ~V~~l~~spdg~~Lasgs~Dg~I~vwd~~~~~~~~~l~~ 165 (689)
.|.++.+ +..+|++-+.|+++++||+.+++++....-
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4666555 477999999999999999999998887653
No 381
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.00 E-value=1.5e+02 Score=32.11 Aligned_cols=40 Identities=20% Similarity=0.126 Sum_probs=28.1
Q ss_pred cEEEEeCCCCCceEEecccCCCCeEEEEEccCCCeEEEEe
Q 040062 317 TITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACS 356 (689)
Q Consensus 317 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~spdg~~L~sgs 356 (689)
.|..++..+++....+.......++.++|+||++.|+++-
T Consensus 510 ~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 510 QMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp EEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred eEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 4666666667655554433345689999999999988764
No 382
>1xak_A SARS ORF7A accessory protein; I-SET IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Sars coronavirus} SCOP: b.1.24.1 PDB: 1yo4_A
Probab=26.61 E-value=1.6e+02 Score=21.39 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=16.3
Q ss_pred EEeecceEEEEEecCceeEEee
Q 040062 666 VLAGNINFWAVGCEDGCLQVSK 687 (689)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~ 687 (689)
.+|-..+-+|.+|.||+-++|-
T Consensus 42 ai~c~~t~f~f~c~d~trh~~q 63 (83)
T 1xak_A 42 ALTCTSTHFAFACADGTRHTYQ 63 (83)
T ss_dssp EEECCSEEEEEECTTSCEEEEE
T ss_pred eEEeecceEEEEEcCCCceeee
Confidence 3444455578999999999983
Done!