BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040065
         (82 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3R2H|A Chain A, 1.7 A Resolution Structure Of As-Isolated Ftna From
           Pseudomonas Aeruginosa (Ph 10.5)
 pdb|3R2K|A Chain A, 1.55a Resolution Structure Of As-Isolated Ftna From
           Pseudomonas Aeruginosa (Ph 7.5)
 pdb|3R2L|A Chain A, 1.85a Resolution Structure Of Iron Soaked Ftna From
           Pseudomonas Aeruginosa (Ph 7.5)
 pdb|3R2M|A Chain A, 1.8a Resolution Structure Of Doubly Soaked Ftna From
           Pseudomonas Aeruginosa (Ph 7.5)
 pdb|3R2O|A Chain A, 1.95 A Resolution Structure Of As-Isolated Ftna From
           Pseudomonas Aeruginosa (Ph 6.0)
 pdb|3R2R|A Chain A, 1.65a Resolution Structure Of Iron Soaked Ftna From
           Pseudomonas Aeruginosa (Ph 6.0)
 pdb|3R2S|A Chain A, 2.1a Resolution Structure Of Doubly Soaked Ftna From
           Pseudomonas Aeruginosa (Ph 6.0)
          Length = 154

 Score = 28.1 bits (61), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 27  TTCPEMFENQDVLQRQLRFAVAAGI 51
           TT PEM E    L+R +R A+A GI
Sbjct: 80  TTVPEMLEADLKLERHVRAALAKGI 104


>pdb|3H0N|A Chain A, Crystal Structure Of A Duf1470 Family Protein (Jann_2411)
           From Jannaschia Sp. Ccs1 At 1.45 A Resolution
          Length = 188

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 22  ILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK 73
           +LRK    PE+ ++ D   R     + A ++  WT     G   E   QN++
Sbjct: 92  LLRKHPATPELAQDPDGTWRLHHHPLDAELVPXWTAICAEGLAREIGHQNVR 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.134    0.410 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,308,170
Number of Sequences: 62578
Number of extensions: 68951
Number of successful extensions: 135
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 133
Number of HSP's gapped (non-prelim): 2
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)