Query 040065
Match_columns 82
No_of_seqs 159 out of 1332
Neff 7.4
Searched_HMMs 46136
Date Fri Mar 29 04:45:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040065.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040065hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02543 pfkB-type carbohydrat 99.9 1.5E-22 3.2E-27 150.4 8.7 79 4-82 418-496 (496)
2 PLN02341 pfkB-type carbohydrat 99.7 1.1E-16 2.3E-21 118.3 7.9 65 7-78 348-412 (470)
3 PLN02323 probable fructokinase 99.7 1.3E-16 2.9E-21 111.8 7.6 62 7-75 259-327 (330)
4 PRK09513 fruK 1-phosphofructok 99.7 2.3E-16 4.9E-21 109.9 6.6 66 7-81 246-311 (312)
5 PTZ00292 ribokinase; Provision 99.7 2.7E-16 5.8E-21 110.0 6.9 61 7-74 265-325 (326)
6 COG0524 RbsK Sugar kinases, ri 99.7 2.3E-16 5.1E-21 109.4 6.5 63 7-76 248-310 (311)
7 PRK13508 tagatose-6-phosphate 99.7 2E-16 4.4E-21 110.1 6.2 65 7-80 244-308 (309)
8 TIGR03828 pfkB 1-phosphofructo 99.7 3.2E-16 7E-21 108.0 7.1 63 7-78 242-304 (304)
9 PRK09850 pseudouridine kinase; 99.6 5.4E-16 1.2E-20 108.2 7.5 62 7-75 247-308 (313)
10 PRK11142 ribokinase; Provision 99.6 4.1E-16 8.9E-21 107.7 6.8 61 7-74 244-304 (306)
11 PLN02967 kinase 99.6 6.1E-16 1.3E-20 116.9 7.2 65 7-71 479-543 (581)
12 TIGR01231 lacC tagatose-6-phos 99.6 5.8E-16 1.3E-20 107.8 6.5 65 7-80 244-308 (309)
13 PLN02813 pfkB-type carbohydrat 99.6 8.1E-16 1.8E-20 112.5 7.0 64 7-77 345-409 (426)
14 PRK10294 6-phosphofructokinase 99.6 2.1E-15 4.5E-20 105.0 7.7 61 7-76 247-307 (309)
15 PLN02379 pfkB-type carbohydrat 99.6 1.5E-15 3.3E-20 109.1 7.1 62 7-75 296-357 (367)
16 KOG2855 Ribokinase [Carbohydra 99.6 2.6E-15 5.7E-20 107.0 7.1 68 7-76 260-327 (330)
17 PLN02630 pfkB-type carbohydrat 99.6 2.7E-15 5.9E-20 107.0 6.8 65 7-80 232-296 (335)
18 TIGR03168 1-PFK hexose kinase, 99.6 7E-15 1.5E-19 101.7 7.4 61 7-76 242-302 (303)
19 PF00294 PfkB: pfkB family car 99.6 5.8E-15 1.2E-19 101.1 6.6 53 6-65 248-300 (301)
20 PRK09434 aminoimidazole ribosi 99.6 5.5E-15 1.2E-19 102.3 6.2 56 7-69 242-303 (304)
21 PRK09954 putative kinase; Prov 99.6 8E-15 1.7E-19 104.4 7.2 61 7-74 300-360 (362)
22 TIGR02198 rfaE_dom_I rfaE bifu 99.6 6E-15 1.3E-19 102.4 6.5 58 7-73 257-314 (315)
23 cd01945 ribokinase_group_B Rib 99.5 1.3E-14 2.9E-19 99.2 6.1 52 7-65 233-284 (284)
24 PTZ00247 adenosine kinase; Pro 99.5 1.2E-14 2.7E-19 102.8 5.8 48 7-61 289-336 (345)
25 cd01168 adenosine_kinase Adeno 99.5 2.4E-14 5.2E-19 99.5 6.3 47 7-60 264-310 (312)
26 PLN02548 adenosine kinase 99.5 2E-14 4.3E-19 100.9 5.4 48 7-61 278-325 (332)
27 cd01172 RfaE_like RfaE encodes 99.5 1.2E-14 2.7E-19 100.2 4.2 50 7-63 249-298 (304)
28 PRK09813 fructoselysine 6-kina 99.5 2.9E-14 6.2E-19 97.1 5.7 46 7-59 214-259 (260)
29 TIGR02152 D_ribokin_bact ribok 99.5 3.1E-14 6.8E-19 97.8 5.9 56 7-69 237-292 (293)
30 cd01940 Fructoselysine_kinase_ 99.5 3.6E-14 7.7E-19 96.3 5.6 46 7-59 217-263 (264)
31 cd01947 Guanosine_kinase_like 99.5 4.5E-14 9.8E-19 96.0 5.7 46 7-59 219-264 (265)
32 PRK15074 inosine/guanosine kin 99.5 4.5E-14 9.8E-19 103.9 5.8 54 7-67 349-424 (434)
33 cd01174 ribokinase Ribokinase 99.5 8.1E-14 1.8E-18 95.5 6.1 52 7-65 241-292 (292)
34 cd01939 Ketohexokinase Ketohex 99.5 4.5E-14 9.8E-19 97.3 4.9 46 7-59 243-289 (290)
35 COG1105 FruK Fructose-1-phosph 99.5 1E-13 2.2E-18 98.4 6.6 65 7-80 244-308 (310)
36 cd01944 YegV_kinase_like YegV- 99.5 6.3E-14 1.4E-18 96.3 5.2 45 7-58 245-289 (289)
37 cd01943 MAK32 MAK32 kinase. M 99.5 2.2E-14 4.7E-19 101.5 2.4 46 7-59 259-304 (328)
38 cd01942 ribokinase_group_A Rib 99.5 1.2E-13 2.6E-18 94.1 5.3 46 7-59 233-278 (279)
39 cd01167 bac_FRK Fructokinases 99.4 1.3E-13 2.9E-18 94.5 4.6 46 7-59 242-294 (295)
40 PRK11316 bifunctional heptose 99.4 3.3E-13 7.1E-18 99.0 6.1 60 7-75 255-314 (473)
41 cd01166 KdgK 2-keto-3-deoxyglu 99.4 4.5E-13 9.7E-18 91.7 5.1 46 7-59 248-293 (294)
42 cd01164 FruK_PfkB_like 1-phosp 99.4 7.1E-13 1.5E-17 91.2 5.1 46 7-59 243-288 (289)
43 cd01941 YeiC_kinase_like YeiC- 99.3 1.2E-12 2.5E-17 89.6 4.6 43 7-56 246-288 (288)
44 cd01946 ribokinase_group_C Rib 99.3 2.8E-12 6E-17 87.9 5.2 50 8-59 226-275 (277)
45 cd01937 ribokinase_group_D Rib 99.3 8.2E-12 1.8E-16 84.4 4.9 42 7-55 213-254 (254)
46 KOG2947 Carbohydrate kinase [C 99.3 3.3E-12 7.2E-17 88.6 2.8 52 2-59 247-298 (308)
47 KOG2854 Possible pfkB family c 99.2 3.3E-11 7.1E-16 86.0 4.1 50 7-65 289-338 (343)
48 TIGR00687 pyridox_kin pyridoxa 98.9 1.8E-09 4E-14 74.9 4.3 36 8-50 215-250 (286)
49 PRK12413 phosphomethylpyrimidi 98.8 1.6E-08 3.4E-13 68.9 5.2 44 7-57 200-243 (253)
50 PRK07105 pyridoxamine kinase; 98.7 1.4E-08 3.1E-13 70.4 4.8 46 7-59 213-258 (284)
51 cd01173 pyridoxal_pyridoxamine 98.7 2.2E-08 4.8E-13 68.1 5.1 42 8-56 210-251 (254)
52 PRK08573 phosphomethylpyrimidi 98.7 9.1E-08 2E-12 70.6 7.3 43 7-56 202-244 (448)
53 PRK05756 pyridoxamine kinase; 98.7 4E-08 8.7E-13 68.2 5.0 41 9-56 215-255 (286)
54 TIGR00097 HMP-P_kinase phospho 98.6 5.6E-08 1.2E-12 66.5 5.3 44 7-57 198-241 (254)
55 PRK12412 pyridoxal kinase; Rev 98.6 8.4E-08 1.8E-12 66.3 5.3 44 7-57 204-247 (268)
56 PRK06427 bifunctional hydroxy- 98.6 8.7E-08 1.9E-12 65.6 5.3 43 8-57 207-249 (266)
57 cd01169 HMPP_kinase 4-amino-5- 98.5 2.3E-07 5E-12 62.4 5.2 41 8-55 200-240 (242)
58 PRK08176 pdxK pyridoxal-pyrido 98.4 6.5E-07 1.4E-11 62.3 5.3 43 7-56 224-266 (281)
59 COG2870 RfaE ADP-heptose synth 98.4 1.4E-07 3E-12 69.4 2.0 56 7-71 254-309 (467)
60 PRK12616 pyridoxal kinase; Rev 98.4 8.1E-07 1.8E-11 61.5 5.3 42 8-56 208-249 (270)
61 PTZ00347 phosphomethylpyrimidi 98.1 7.3E-06 1.6E-10 61.3 5.2 42 8-56 437-478 (504)
62 PLN02898 HMP-P kinase/thiamin- 98.0 9.4E-06 2E-10 60.7 4.9 43 8-57 212-254 (502)
63 cd01171 YXKO-related B.subtili 97.9 2.3E-05 5.1E-10 53.4 5.1 44 7-57 193-236 (254)
64 PTZ00344 pyridoxal kinase; Pro 97.9 2.7E-05 5.8E-10 54.6 5.2 41 8-56 218-258 (296)
65 PRK14713 multifunctional hydro 97.8 4.2E-05 9.1E-10 57.7 5.2 37 8-51 231-267 (530)
66 PRK09517 multifunctional thiam 97.7 5.4E-05 1.2E-09 59.3 5.2 42 8-56 443-484 (755)
67 PLN02978 pyridoxal kinase 96.9 0.0026 5.7E-08 45.0 5.1 40 10-56 227-267 (308)
68 TIGR00196 yjeF_cterm yjeF C-te 96.8 0.0073 1.6E-07 41.7 7.0 59 8-75 206-268 (272)
69 PF08543 Phos_pyr_kin: Phospho 96.3 0.011 2.4E-07 40.4 5.0 40 9-55 194-233 (246)
70 cd01170 THZ_kinase 4-methyl-5- 95.8 0.058 1.2E-06 37.0 6.7 40 8-54 181-220 (242)
71 PTZ00493 phosphomethylpyrimidi 95.1 0.056 1.2E-06 39.0 5.0 40 10-56 246-285 (321)
72 COG2240 PdxK Pyridoxal/pyridox 95.0 0.065 1.4E-06 38.1 5.1 41 8-55 209-249 (281)
73 KOG3009 Predicted carbohydrate 94.5 0.01 2.2E-07 45.1 0.1 43 7-56 558-600 (614)
74 COG0351 ThiD Hydroxymethylpyri 93.2 0.2 4.4E-06 35.3 4.5 39 10-55 206-244 (263)
75 PRK09355 hydroxyethylthiazole 92.5 0.36 7.8E-06 33.5 5.0 39 8-53 185-223 (263)
76 TIGR00694 thiM hydroxyethylthi 83.4 3 6.6E-05 28.6 4.6 31 11-48 183-213 (249)
77 PHA00438 hypothetical protein 77.8 1.8 3.8E-05 25.3 1.6 16 12-27 47-62 (81)
78 PF10911 DUF2717: Protein of u 73.8 2.7 5.8E-05 24.4 1.7 16 12-27 47-62 (77)
79 PRK03979 ADP-specific phosphof 70.5 2 4.4E-05 32.6 0.8 21 7-27 434-454 (463)
80 KOG0174 20S proteasome, regula 60.1 3.7 8E-05 28.1 0.5 43 12-60 147-189 (224)
81 PF01256 Carb_kinase: Carbohyd 59.9 54 0.0012 22.5 7.0 41 11-58 184-228 (242)
82 KOG4631 NADH:ubiquinone oxidor 59.5 10 0.00022 22.9 2.2 22 61-82 20-41 (100)
83 KOG2599 Pyridoxal/pyridoxine/p 58.0 29 0.00063 25.1 4.7 32 12-47 223-254 (308)
84 PF11167 DUF2953: Protein of u 54.5 8.2 0.00018 20.2 1.2 17 11-27 2-18 (53)
85 PRK14039 ADP-dependent glucoki 49.3 8.2 0.00018 29.3 0.9 21 7-27 427-447 (453)
86 PRK10565 putative carbohydrate 48.0 49 0.0011 25.3 4.8 31 10-47 436-466 (508)
87 PF11798 IMS_HHH: IMS family H 46.0 16 0.00035 17.3 1.4 16 67-82 2-17 (32)
88 TIGR02045 P_fruct_ADP ADP-spec 45.3 10 0.00022 28.8 0.8 20 7-26 420-440 (446)
89 PF02659 DUF204: Domain of unk 44.5 52 0.0011 17.7 4.5 13 15-27 3-15 (67)
90 PF04306 DUF456: Protein of un 34.1 71 0.0015 20.2 3.3 26 17-49 88-113 (140)
91 PF03956 DUF340: Membrane prot 32.6 50 0.0011 22.0 2.6 35 16-57 68-102 (191)
92 PRK14038 ADP-dependent glucoki 31.3 1.3E+02 0.0028 23.1 4.7 33 35-71 353-385 (453)
93 PLN02689 Bifunctional isoaspar 29.0 43 0.00093 24.3 1.9 39 8-48 234-273 (318)
94 PF04228 Zn_peptidase: Putativ 27.2 1.6E+02 0.0034 21.1 4.4 42 15-58 215-256 (292)
95 PRK03979 ADP-specific phosphof 25.9 1.9E+02 0.0041 22.3 4.8 34 35-72 361-394 (463)
96 PF13808 DDE_Tnp_1_assoc: DDE_ 25.5 1.4E+02 0.0031 17.1 6.9 55 16-77 23-77 (90)
97 TIGR02045 P_fruct_ADP ADP-spec 24.9 1.9E+02 0.0042 22.1 4.7 33 35-71 347-379 (446)
98 COG1971 Predicted membrane pro 24.4 1.8E+02 0.0038 19.7 4.1 33 15-53 15-47 (190)
99 KOG3361 Iron binding protein i 23.8 75 0.0016 20.6 2.1 37 11-54 86-123 (157)
100 PF14748 P5CR_dimer: Pyrroline 22.9 1.5E+02 0.0032 17.6 3.2 35 11-47 12-46 (107)
101 PF02885 Glycos_trans_3N: Glyc 22.8 1.4E+02 0.003 16.0 3.6 27 15-47 33-59 (66)
102 cd04702 ASRGL1_like ASRGL1_lik 21.0 77 0.0017 22.5 1.9 39 8-48 178-216 (261)
103 KOG3787 Glutamate/aspartate an 20.6 77 0.0017 24.6 1.9 15 14-28 435-449 (507)
No 1
>PLN02543 pfkB-type carbohydrate kinase family protein
Probab=99.88 E-value=1.5e-22 Score=150.40 Aligned_cols=79 Identities=95% Similarity=1.467 Sum_probs=69.6
Q ss_pred CCCCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCCC
Q 040065 4 ITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSMW 82 (82)
Q Consensus 4 ~~~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~~ 82 (82)
+++.+||||||||+|+|||+++|++......++++++++++||+++|+++|++.|++.++|+++++++++++++||+||
T Consensus 418 v~~~~VDTTGAGDAF~AGfL~~Ll~~~~~~~~g~~l~ealrfAnAaaAl~vt~~GA~~~lPt~~ev~~~~~~~~~~~~~ 496 (496)
T PLN02543 418 ITPFTCDRTGSGDAVVAAIMRKLTTCPEMFEDQDVLERQLRFAVAAGIISQWTIGAVRGFPTESATQNLKEQVYVPSMW 496 (496)
T ss_pred CCCCCcCCCchHHHHHHHHHHHHHhccccccccccHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHhhccccCC
Confidence 4555799999999999999999984322221357899999999999999999999999999999999999999999999
No 2
>PLN02341 pfkB-type carbohydrate kinase family protein
Probab=99.68 E-value=1.1e-16 Score=118.26 Aligned_cols=65 Identities=26% Similarity=0.235 Sum_probs=61.0
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYV 78 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~ 78 (82)
++||||||||+|+|||+++++ +|++++++++||+++|+++++..|+..++|+++++++++++...
T Consensus 348 ~vVDTtGAGDaF~Agfl~gll-------~G~~l~eal~~A~a~aA~~v~~~Ga~~~~p~~~ev~~~l~~~~~ 412 (470)
T PLN02341 348 NVVDTVGCGDSFAAAIALGYI-------HNLPLVNTLTLANAVGAATAMGCGAGRNVATLEKVLELLRASNL 412 (470)
T ss_pred CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcCcCCCCCCCCHHHHHHHHHhcCC
Confidence 589999999999999999999 99999999999999999999999999999999999999876553
No 3
>PLN02323 probable fructokinase
Probab=99.68 E-value=1.3e-16 Score=111.84 Aligned_cols=62 Identities=37% Similarity=0.532 Sum_probs=57.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchh-------hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-------VLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ 75 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-------~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~ 75 (82)
++||||||||+|+|||+++++ +|+ ++++++++|+++|++++++.|+...+|+++++++++++
T Consensus 259 ~vvDttGAGDaf~Agfl~~l~-------~g~~~~~~~~~l~~al~~a~a~Aa~~v~~~g~~~~~~~~~~v~~~l~~ 327 (330)
T PLN02323 259 KAVDTTGAGDAFVGGLLSQLA-------KDLSLLEDEERLREALRFANACGAITTTERGAIPALPTKEAVLKLLKK 327 (330)
T ss_pred CCCCCCCcHHHHHHHHHHHHH-------cCCccccchHHHHHHHHHHHHHHHHHHhccCCccCCCCHHHHHHHHHH
Confidence 589999999999999999999 665 48999999999999999999998888999999988765
No 4
>PRK09513 fruK 1-phosphofructokinase; Provisional
Probab=99.66 E-value=2.3e-16 Score=109.94 Aligned_cols=66 Identities=18% Similarity=0.288 Sum_probs=61.0
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPSM 81 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~~ 81 (82)
.++||+||||+|+|||+++++ +|+++++++++|+++|++++++.|. +.++++++++++.++.+.++
T Consensus 246 ~~vDttGAGDaf~ag~i~~l~-------~g~~~~~a~~~A~a~Aa~~~~~~~~--~~~~~~e~~~~l~~~~~~~~ 311 (312)
T PRK09513 246 DVVSTVGAGDSMVGGLIYGLL-------MRESSEHTLRLATAVSALAVSQSNV--GITDRPQLAAMMARVDLTPF 311 (312)
T ss_pred cccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhhCCCC--CCCCHHHHHHHHhceEEEeC
Confidence 489999999999999999999 9999999999999999999999974 78999999999998887653
No 5
>PTZ00292 ribokinase; Provisional
Probab=99.66 E-value=2.7e-16 Score=110.01 Aligned_cols=61 Identities=20% Similarity=0.222 Sum_probs=57.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE 74 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~ 74 (82)
++|||+||||+|+|||+++++ +|+++++++++|+++|++++++.|+...+|+.+++++.++
T Consensus 265 ~vvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~a~a~Aa~~v~~~G~~~~~~~~~~~~~~~~ 325 (326)
T PTZ00292 265 KAVDTTGAGDCFVGSMAYFMS-------RGKDLKESCKRANRIAAISVTRHGTQSSYPHPSELPADVK 325 (326)
T ss_pred ccCCCcchHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHcCCCCccccCCCHHHHHHHhc
Confidence 589999999999999999999 9999999999999999999999999888899999887654
No 6
>COG0524 RbsK Sugar kinases, ribokinase family [Carbohydrate transport and metabolism]
Probab=99.66 E-value=2.3e-16 Score=109.43 Aligned_cols=63 Identities=35% Similarity=0.450 Sum_probs=59.8
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV 76 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~ 76 (82)
++||||||||+|.|||+++++ +|+++++++++|++++++++++.|+...+|+.++++.++++.
T Consensus 248 ~vvDttGAGDaF~agfl~~~~-------~g~~~~~a~~~a~a~aa~~~~~~g~~~~~p~~~~~~~~~~~~ 310 (311)
T COG0524 248 KVVDTTGAGDAFAAGFLAGLL-------EGKSLEEALRFANAAAALAVTRPGARPSLPTREEVEAFLEEL 310 (311)
T ss_pred ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhhhhccCCCCCCCCCHHHHHHHHhcc
Confidence 499999999999999999999 999999999999999999999999999999999999988753
No 7
>PRK13508 tagatose-6-phosphate kinase; Provisional
Probab=99.66 E-value=2e-16 Score=110.07 Aligned_cols=65 Identities=25% Similarity=0.248 Sum_probs=60.0
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS 80 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~ 80 (82)
.+||||||||+|+|||+++++ +|+++++++++|+++|++++++.+. ...++.+++++++++.+.+
T Consensus 244 ~vvDttGAGDaF~Agfi~~l~-------~g~~~~~al~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~i~~~~ 308 (309)
T PRK13508 244 EVVNPVGSGDSTVAGIASGLL-------HQEDDADLLKKANVLGMLNAQEKQT--GHVNMANYDELYNQIEVKE 308 (309)
T ss_pred cccCCcChhHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCc--CCCCHHHHHHHHhceEEEe
Confidence 489999999999999999999 9999999999999999999999987 5678899999999888764
No 8
>TIGR03828 pfkB 1-phosphofructokinase. This enzyme acts in concert with the fructose-specific phosphotransferase system (PTS) which imports fructose as fructose-1-phosphate. The action of 1-phosphofructokinase results in beta-D-fructose-1,6-bisphosphate and is an entry point into glycolysis (GenProp0688).
Probab=99.65 E-value=3.2e-16 Score=108.03 Aligned_cols=63 Identities=35% Similarity=0.508 Sum_probs=58.6
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYV 78 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~ 78 (82)
.++||+||||+|.|||+++++ +|.++++++++|+++|++++++.|+ .+|+++++++++.++.+
T Consensus 242 ~vvDttGAGDaF~a~~l~~l~-------~g~~~~~a~~~a~~~Aa~~~~~~G~--~~p~~~~~~~~~~~~~~ 304 (304)
T TIGR03828 242 EVVSTVGAGDSMVAGFLAGLE-------SGLSLEEALRLAVAAGSAAAFSEGT--GLPDPEDIEELLPQVTI 304 (304)
T ss_pred cccCCcChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCC--CCCCHHHHHHHHhcccC
Confidence 479999999999999999999 9999999999999999999999997 47999999999887754
No 9
>PRK09850 pseudouridine kinase; Provisional
Probab=99.65 E-value=5.4e-16 Score=108.21 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=59.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ 75 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~ 75 (82)
++||||||||+|+|||++++. +|+++.+++++|+++|++++++.+..+..|++++++.++++
T Consensus 247 ~vvDttGAGDaF~agfi~~l~-------~g~~~~eal~~a~a~aa~~~~~~~~~~~~~~~~~~~~~~~~ 308 (313)
T PRK09850 247 NVINVTGAGDAMMAGLASCWV-------DGMPFAESVRFAQGCSSMALSCEYTNNPDLSIANVISLVEN 308 (313)
T ss_pred ccccCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCCCcccCHHHHHHHHHH
Confidence 589999999999999999999 99999999999999999999999999999999999988764
No 10
>PRK11142 ribokinase; Provisional
Probab=99.65 E-value=4.1e-16 Score=107.73 Aligned_cols=61 Identities=26% Similarity=0.320 Sum_probs=57.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE 74 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~ 74 (82)
.++||+||||+|+|||+++++ +|+++++++++|+++|+.++++.|+....|+.++++++++
T Consensus 244 ~vvDt~GAGDaF~Agfi~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~~~~~~ 304 (306)
T PRK11142 244 QAVDTIAAGDTFNGALVTALL-------EGKPLPEAIRFAHAAAAIAVTRKGAQPSIPWREEIDAFLQ 304 (306)
T ss_pred ccccCCCchhHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHHh
Confidence 589999999999999999999 9999999999999999999999999877899999988765
No 11
>PLN02967 kinase
Probab=99.63 E-value=6.1e-16 Score=116.91 Aligned_cols=65 Identities=34% Similarity=0.780 Sum_probs=54.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~ 71 (82)
.+||||||||+|+||||++|++....+..+.+++++++||+++|+++++..|++.++|+++++++
T Consensus 479 ~vVDTTGAGDAF~AGfL~~Ll~g~~~~~g~~~LeeaLrfAnAaAAL~vt~~GA~~glPt~~eV~~ 543 (581)
T PLN02967 479 FTSDMSASGDGIVAGLMRMLTVQPHLITDKGYLEKTIKYAIDCGVIDQWLLARTRGFPPKEDMED 543 (581)
T ss_pred CCCCCCchhHHHHHHHHHHHHhccCcccccccHHHHHHHHHHHHHHHhccCCCccCCCCHHHHhh
Confidence 36999999999999999999942111101267999999999999999999999999999999864
No 12
>TIGR01231 lacC tagatose-6-phosphate kinase. This enzyme is part of the tagatose-6-phosphate pathway of lactose degradation.
Probab=99.63 E-value=5.8e-16 Score=107.76 Aligned_cols=65 Identities=25% Similarity=0.275 Sum_probs=59.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS 80 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~ 80 (82)
++||||||||+|+|||+++++ +|+++++++++|+++|++++++.+. ...++++++++.+++.+.+
T Consensus 244 ~vvDttGAGDaF~agfl~~l~-------~g~~~~~a~~~a~a~aa~~~~~~~~--~~~~~~~~~~~~~~i~~~~ 308 (309)
T TIGR01231 244 SVVNPVGSGDSTVAGITSALL-------NHESDHDLLKKANTLGMLNAQEAQT--GHVNLNNYDDLFNQIEVLE 308 (309)
T ss_pred CcCCCcchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCccc--CCCCHHHHHHHHhceEEEe
Confidence 589999999999999999999 9999999999999999999999876 5688899999999987754
No 13
>PLN02813 pfkB-type carbohydrate kinase family protein
Probab=99.63 E-value=8.1e-16 Score=112.53 Aligned_cols=64 Identities=19% Similarity=0.081 Sum_probs=59.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchh-hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-VLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY 77 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~ 77 (82)
++||||||||+|+|||+++++ +|+ +++++++||+++|+.++++.|+...+|+.+++.+.++...
T Consensus 345 ~vVDTtGAGDAF~Agfl~~l~-------~G~~~l~~al~~A~a~Aa~~v~~~Ga~~~~~~~~e~~~~~~~~~ 409 (426)
T PLN02813 345 VPVDTCGAGDAYAAGILYGLL-------RGVSDLRGMGELAARVAATVVGQQGTRLRVEDAVELAESFALHL 409 (426)
T ss_pred CcccCCChHHHHHHHHHHHHH-------cCCCCHHHHHHHHHHHHHHHHcccCCCcCHHHHHHHHHHHHHHh
Confidence 589999999999999999999 999 9999999999999999999999988898888888776543
No 14
>PRK10294 6-phosphofructokinase 2; Provisional
Probab=99.61 E-value=2.1e-15 Score=105.00 Aligned_cols=61 Identities=30% Similarity=0.415 Sum_probs=55.9
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV 76 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~ 76 (82)
++||||||||+|+|||+++++ +|+++++++++|+++|++++++.|+. ..+.++++++.+++
T Consensus 247 ~vvDttGAGDaf~ag~l~~l~-------~g~~~~~al~~a~a~aa~~v~~~G~~--~~~~~~~~~~~~~~ 307 (309)
T PRK10294 247 KSQSTVGAGDSMVGAMTLKLA-------ENASLEEMVRFGVAAGSAATLNQGTR--LCSHDDTQKIYAYL 307 (309)
T ss_pred ccCCCcchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCCC--CCCHHHHHHHHHHh
Confidence 589999999999999999999 99999999999999999999999974 46888898888764
No 15
>PLN02379 pfkB-type carbohydrate kinase family protein
Probab=99.61 E-value=1.5e-15 Score=109.11 Aligned_cols=62 Identities=16% Similarity=0.100 Sum_probs=52.3
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ 75 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~ 75 (82)
++||||||||+|+|||+++++ +|+++++|+++|+++|+.++++.|+......++++.++++.
T Consensus 296 ~vVDTtGAGDaFaagfl~gl~-------~G~~l~~a~~~g~~aAa~vi~~~G~~~~~~~~~~~~~~~~~ 357 (367)
T PLN02379 296 NAVDATGAGDLFASGFLYGLI-------KGLSLEECCKVGACSGGSVVRALGGEVTPENWQWMYKQMQL 357 (367)
T ss_pred CcccCCChhHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHhccCCCCChHHHHHHHHHHHH
Confidence 489999999999999999999 99999999999999999999999975443344455555543
No 16
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=2.6e-15 Score=106.95 Aligned_cols=68 Identities=34% Similarity=0.472 Sum_probs=58.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV 76 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~ 76 (82)
++||||||||+|+|||+.+|.+. ... ....++++++||++|++++++..|+++++|.++++++.++..
T Consensus 260 ~~VDtTGAGDsFvgal~~~L~~~-~~~-~~~~L~~~l~~A~a~~ai~v~~~Ga~~s~p~~~~~~~~~~~~ 327 (330)
T KOG2855|consen 260 KAVDTTGAGDSFVGALAVQLVRG-SLL-PELSLEEALRFANACGAITVQRKGAIPSMPTEKEVQSLLKSS 327 (330)
T ss_pred ccccCCCchHHHHHHHHHHHhhc-ccc-chHHHHHHHHHHHHhhhHHhhccCCCccCccHHHHHHHhhhc
Confidence 38999999999999999999943 112 235699999999999999999999999999999998877654
No 17
>PLN02630 pfkB-type carbohydrate kinase family protein
Probab=99.59 E-value=2.7e-15 Score=107.02 Aligned_cols=65 Identities=18% Similarity=0.186 Sum_probs=59.3
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS 80 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~ 80 (82)
.+||||||||+|+|||+++++ ++++++++++||+++|++++++.|. ...+.++++++++++.+.+
T Consensus 232 ~~vDttGAGDaF~agfi~~l~-------~g~~~~~a~~~A~a~aa~~v~~~G~--~~~~~~~l~~~~~~i~i~~ 296 (335)
T PLN02630 232 IQVDPTGAGDSFLGGFVAGLV-------QGLAVPDAALLGNYFGSLAVEQVGI--PKFDLRQLQRVKDEVQRRK 296 (335)
T ss_pred CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCcCCC--CCCCHHHHHHHhhcEEEEE
Confidence 589999999999999999999 8999999999999999999999995 5568899999998887654
No 18
>TIGR03168 1-PFK hexose kinase, 1-phosphofructokinase family. This family consists largely of 1-phosphofructokinases, but also includes tagatose-6-kinases and 6-phosphofructokinases.
Probab=99.58 E-value=7e-15 Score=101.73 Aligned_cols=61 Identities=38% Similarity=0.576 Sum_probs=56.8
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQV 76 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~ 76 (82)
+++||+||||+|+|||+++++ +|.++++++++|+++|+.++++.|+ ..|+++++++++.++
T Consensus 242 ~~vDttGAGD~F~a~~~~~l~-------~g~~i~~a~~~A~~~aa~~~~~~G~--~~~~~~~~~~~~~~~ 302 (303)
T TIGR03168 242 EVVNTVGAGDSMVAGFLAGLA-------RGLSLEEALRFAVAAGSAAAFSPGT--GLPDPEDVEELLDQV 302 (303)
T ss_pred eeecCcCHHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCc--CCCCHHHHHHHHhhc
Confidence 578999999999999999999 8999999999999999999999998 468999999988775
No 19
>PF00294 PfkB: pfkB family carbohydrate kinase; InterPro: IPR011611 This entry includes a variety of carbohydrate and pyrimidine kinases. The family includes phosphomethylpyrimidine kinase (2.7.4.7 from EC). This enzyme is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 1VM7_B 2ABQ_B 3GO7_B 3GO6_B 3FHY_A 4EOH_B 2YXU_A 2F7K_A 3KEU_A 2YXT_B ....
Probab=99.57 E-value=5.8e-15 Score=101.09 Aligned_cols=53 Identities=32% Similarity=0.386 Sum_probs=49.8
Q ss_pred CCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065 6 PFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65 (82)
Q Consensus 6 ~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~ 65 (82)
.+++|||||||+|+|||+++++ ++.++++++++|+++|+.++++.|+..++|+
T Consensus 248 ~~vvdttGAGD~f~A~~i~~l~-------~~~~~~~a~~~a~~~aa~~v~~~g~~~~~p~ 300 (301)
T PF00294_consen 248 VNVVDTTGAGDAFAAGFIYGLL-------SGMSLEEALKFANAAAALKVQQPGPRSPLPT 300 (301)
T ss_dssp SSSSSCTTHHHHHHHHHHHHHH-------TTHHHHHHHHHHHHHHHHHHTSSSSSGGTT-
T ss_pred ccccceeccchhhhHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhCCCCCcCCCCC
Confidence 4699999999999999999999 9999999999999999999999999888875
No 20
>PRK09434 aminoimidazole riboside kinase; Provisional
Probab=99.57 E-value=5.5e-15 Score=102.31 Aligned_cols=56 Identities=32% Similarity=0.428 Sum_probs=51.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchh------hHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD------VLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~------~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i 69 (82)
.+||||||||+|+|||+++++ +|+ ++++++++|+++|+++++++|+...+|+.+++
T Consensus 242 ~~vDttGAGD~f~ag~~~~l~-------~g~~~~~~~~~~~a~~~a~~~Aa~~v~~~g~~~~~~~~~~~ 303 (304)
T PRK09434 242 DPVDTTGAGDAFVAGLLAGLS-------QAGLWTDEAELAEIIAQAQACGALATTAKGAMTALPNRQEL 303 (304)
T ss_pred CCCcCCCchHHHHHHHHHHHH-------cCCCccchHHHHHHHHHHHHHHHHHHcccCCcCCCCChHHc
Confidence 589999999999999999999 664 89999999999999999999998888887765
No 21
>PRK09954 putative kinase; Provisional
Probab=99.57 E-value=8e-15 Score=104.39 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=54.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKE 74 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~ 74 (82)
.+||||||||+|+|||+++++ +|++++++++||+++|++++.+........+.+.++++++
T Consensus 300 ~vvDttGAGDaF~Ag~l~~l~-------~g~~~~eal~~a~a~Aal~~~s~~~~~~~~~~~~~~~~~~ 360 (362)
T PRK09954 300 TTVDSFGADDGFMAGLVYSFL-------EGYSFRDSARFAMACAAISRASGSLNNPTLSADNALSLVP 360 (362)
T ss_pred ccccccchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCCCcCCCcCCHHHHHHHhc
Confidence 589999999999999999999 9999999999999999999887766666677888877764
No 22
>TIGR02198 rfaE_dom_I rfaE bifunctional protein, domain I. RfaE is a protein involved in the biosynthesis of ADP-L-glycero-D-manno-heptose, a precursor for LPS inner core biosynthesis. RfaE is a bifunctional protein in E. coli, and separate proteins in some other genome. The longer, N-terminal domain I (this family) is suggested to act in D-glycero-D-manno-heptose 1-phosphate biosynthesis, while domain II (TIGR02199) adds ADP to yield ADP-D-glycero-D-manno-heptose.
Probab=99.57 E-value=6e-15 Score=102.40 Aligned_cols=58 Identities=26% Similarity=0.289 Sum_probs=53.3
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLK 73 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~ 73 (82)
.+|||+||||+|.|||+++++ +++++++++++|+++|++++++.|+.. ++++++++.+
T Consensus 257 ~vvdt~GAGDaf~ag~~~~l~-------~g~~~~~al~~A~~~aa~~~~~~G~~~--~~~~~~~~~~ 314 (315)
T TIGR02198 257 EVYDVTGAGDTVIATLALALA-------AGASLEEACRLANAAAGVVVGKLGTAT--VSPAELANAL 314 (315)
T ss_pred CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhhhhccCCCCC--CCHHHHHHHh
Confidence 589999999999999999999 999999999999999999999999853 7888887765
No 23
>cd01945 ribokinase_group_B Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time. .
Probab=99.54 E-value=1.3e-14 Score=99.17 Aligned_cols=52 Identities=35% Similarity=0.472 Sum_probs=49.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~ 65 (82)
+++||+||||+|+|||+++++ +|+++++++++|+++|++++++.|+.+++|+
T Consensus 233 ~vvDt~GAGDaf~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 284 (284)
T cd01945 233 EVVDTTGAGDVFHGAFAHALA-------EGMPLREALRFASAAAALKCRGLGGRAGLPT 284 (284)
T ss_pred ccccCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCcccCCC
Confidence 589999999999999999999 9999999999999999999999999877763
No 24
>PTZ00247 adenosine kinase; Provisional
Probab=99.53 E-value=1.2e-14 Score=102.75 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=45.6
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR 61 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~ 61 (82)
++||||||||+|+|||+++++ +|++++++++||+++|++++++.|+..
T Consensus 289 ~vVDTtGAGDaF~agfl~~l~-------~g~~~~~al~~a~~aAa~~v~~~Ga~~ 336 (345)
T PTZ00247 289 KIVDTNGAGDAFVGGFLAQYA-------NGKDIDRCVEAGHYSAQVIIQHNGCTY 336 (345)
T ss_pred CccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 489999999999999999999 999999999999999999999999853
No 25
>cd01168 adenosine_kinase Adenosine kinase (AK) catalyzes the phosphorylation of ribofuranosyl-containing nucleoside analogues at the 5'-hydroxyl using ATP or GTP as the phosphate donor.The physiological function of AK is associated with the regulation of extracellular adenosine levels and the preservation of intracellular adenylate pools. Adenosine kinase is involved in the purine salvage pathway.
Probab=99.52 E-value=2.4e-14 Score=99.52 Aligned_cols=47 Identities=23% Similarity=0.310 Sum_probs=45.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~ 60 (82)
++||||||||+|+|||+++++ +|+++++|+++|+++|++++++.|+.
T Consensus 264 ~vvDttGAGDaf~ag~l~~l~-------~g~~~~~a~~~a~~~Aa~~v~~~G~~ 310 (312)
T cd01168 264 KIVDTNGAGDAFAGGFLYGLV-------QGEPLEECIRLGSYAAAEVIQQLGPR 310 (312)
T ss_pred CcccCCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 589999999999999999999 99999999999999999999999974
No 26
>PLN02548 adenosine kinase
Probab=99.51 E-value=2e-14 Score=100.94 Aligned_cols=48 Identities=23% Similarity=0.264 Sum_probs=45.6
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVR 61 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~ 61 (82)
++||||||||+|+|||+++++ +++++++++++|+++|++++++.|+..
T Consensus 278 ~vvDttGAGDaF~ag~l~~l~-------~g~~l~eal~~a~aaAa~~v~~~G~~~ 325 (332)
T PLN02548 278 KLVDTNGAGDAFVGGFLSQLV-------QGKDIEECVRAGNYAANVIIQRSGCTY 325 (332)
T ss_pred ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCCCC
Confidence 589999999999999999999 999999999999999999999999753
No 27
>cd01172 RfaE_like RfaE encodes a bifunctional ADP-heptose synthase involved in the biosynthesis of the lipopolysaccharide (LPS) core precursor ADP-L-glycero-D-manno-heptose. LPS plays an important role in maintaining the structural integrity of the bacterial outer membrane of gram-negative bacteria. RfaE consists of two domains, a sugar kinase domain, represented here, and a domain belonging to the cytidylyltransferase superfamily.
Probab=99.51 E-value=1.2e-14 Score=100.16 Aligned_cols=50 Identities=26% Similarity=0.237 Sum_probs=46.9
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGF 63 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~ 63 (82)
++||||||||+|+|||+++++ +++++++++++|+++|+.++++.|+....
T Consensus 249 ~vvdttGAGDaf~ag~i~~l~-------~g~~~~~al~~a~a~Aa~~~~~~g~~~~~ 298 (304)
T cd01172 249 EVYDVTGAGDTVIATLALALA-------AGADLEEAAFLANAAAGVVVGKVGTAPVT 298 (304)
T ss_pred CCCCCcCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhheeeecCCCCCcC
Confidence 589999999999999999999 99999999999999999999999986543
No 28
>PRK09813 fructoselysine 6-kinase; Provisional
Probab=99.51 E-value=2.9e-14 Score=97.08 Aligned_cols=46 Identities=22% Similarity=0.219 Sum_probs=44.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
++||||||||+|.|||++++. +++++++++++|+++|+++++++|+
T Consensus 214 ~~vDttGAGDaF~ag~i~~~~-------~g~~~~~al~~a~~~aa~~~~~~G~ 259 (260)
T PRK09813 214 TVVDTMGAGDSFIAGFLCGWL-------AGMTLPQAMAQGTACAAKTIQYHGA 259 (260)
T ss_pred CCCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCC
Confidence 589999999999999999999 9999999999999999999999985
No 29
>TIGR02152 D_ribokin_bact ribokinase. This model describes ribokinase, an enzyme catalyzing the first step in ribose catabolism. The rbsK gene encoding ribokinase typically is found with ribose transport genes. Ribokinase belongs to the carbohydrate kinase pfkB family (pfam00294). In the wide gulf between the current trusted (360 bit) and noise (100 bit) cutoffs are a number of sequences, few of which are clustered with predicted ribose transport genes but many of which are currently annotated as if having ribokinase activity. Most likely some have this function and others do not.
Probab=99.51 E-value=3.1e-14 Score=97.83 Aligned_cols=56 Identities=29% Similarity=0.323 Sum_probs=52.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESAT 69 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i 69 (82)
.++||+||||+|.|||+++++ +++++++++++|+++|+.++++.|+...+|+++++
T Consensus 237 ~~vdt~GAGDaf~Ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~~~~~ 292 (293)
T TIGR02152 237 KAVDTTAAGDTFNGAFAVALA-------EGKSLEDAIRFANAAAAISVTRKGAQSSIPYLEEV 292 (293)
T ss_pred ceeCCCCcHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHcccCcccCCCChHHc
Confidence 589999999999999999999 89999999999999999999999997777877765
No 30
>cd01940 Fructoselysine_kinase_like Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the lysine side chains. Fructoseamines are typically metabolized by fructoseamine-3-kinase, especially in higher eukaryotes. In E. coli, fructoselysine kinase has been shown in vitro to catalyze the phosphorylation of fructoselysine. It is proposed that fructoselysine is released from glycated proteins during human digestion and is partly metabolized by bacteria in the hind gut using a protein such as fructoselysine kinase. This family is found only in bacterial sequences, and its oligomeric state is currently unknown.
Probab=99.50 E-value=3.6e-14 Score=96.31 Aligned_cols=46 Identities=22% Similarity=0.244 Sum_probs=44.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhh-HHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDV-LQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~-~~~al~~a~a~aa~~~~~~G~ 59 (82)
+++|||||||+|+|||+++++ +|++ +++++++|+++|++++++.|+
T Consensus 217 ~~vDttGAGDaf~ag~i~~l~-------~g~~~~~~al~~a~~~aa~~~~~~G~ 263 (264)
T cd01940 217 EVVDTLGAGDSFIAGFLLSLL-------AGGTAIAEAMRQGAQFAAKTCGHEGA 263 (264)
T ss_pred CCCCCCCchHHHHHHHHHHHH-------hCCchHHHHHHHHHHHHHHHhcccCC
Confidence 589999999999999999999 8998 999999999999999999986
No 31
>cd01947 Guanosine_kinase_like Guanosine kinase-like sugar kinases. Found in bacteria and archaea, the guanosine kinase-like group is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.49 E-value=4.5e-14 Score=95.99 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=44.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
+++|||||||+|+|||+++++ +++++++++++|+++|+.++++.|+
T Consensus 219 ~vvDttGAGDaF~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~v~~~G~ 264 (265)
T cd01947 219 KVPDSTGAGDSFAAGFIYGLL-------KGWSIEEALELGAQCGAICVSHFGP 264 (265)
T ss_pred CCCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhccCC
Confidence 589999999999999999999 9999999999999999999999985
No 32
>PRK15074 inosine/guanosine kinase; Provisional
Probab=99.49 E-value=4.5e-14 Score=103.86 Aligned_cols=54 Identities=20% Similarity=0.349 Sum_probs=48.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchh--------------------hHHHHHHHHHHHHHHHHhhcCC--CCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD--------------------VLQRQLRFAVAAGIIAQWTIGA--VRGFP 64 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~--------------------~~~~al~~a~a~aa~~~~~~G~--~~~~~ 64 (82)
++||||||||+|+|||||+|. +|+ ++.+|+++|+++|+.++++.|+ ..++|
T Consensus 349 ~~vDttGAGD~f~~gfl~~l~-------~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~a~~vi~~~G~~~~~~~p 421 (434)
T PRK15074 349 KIMNTNGAGDGALSALLHDIT-------ANSYHRSNVPNSSKHKRTYLTYSSLAQVCKYANRVSYEVLNQHSPRLSRGLP 421 (434)
T ss_pred cceeCCCcHHHHHHHHHHHHH-------CCCcccccccccccccccccccCCHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 589999999999999999999 665 7999999999999999999998 55667
Q ss_pred CHH
Q 040065 65 TES 67 (82)
Q Consensus 65 ~~~ 67 (82)
+.+
T Consensus 422 ~~~ 424 (434)
T PRK15074 422 ERE 424 (434)
T ss_pred Ccc
Confidence 654
No 33
>cd01174 ribokinase Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.
Probab=99.48 E-value=8.1e-14 Score=95.47 Aligned_cols=52 Identities=33% Similarity=0.442 Sum_probs=49.0
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~ 65 (82)
.++||+||||+|+|||+++++ +|.++++++++|+++|+.++++.|+...+|+
T Consensus 241 ~~vdt~GaGD~F~ag~l~~l~-------~g~~~~~al~~a~~~Aa~~~~~~G~~~~~~~ 292 (292)
T cd01174 241 KAVDTTGAGDTFIGALAAALA-------RGLSLEEAIRFANAAAALSVTRPGAQPSIPT 292 (292)
T ss_pred ccCCCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCcCCCCCCCC
Confidence 589999999999999999999 9999999999999999999999999877763
No 34
>cd01939 Ketohexokinase Ketohexokinase (fructokinase, KHK) catalyzes the phosphorylation of fructose to fructose-1-phosphate (F1P), the first step in the metabolism of dietary fructose. KHK can also phosphorylate several other furanose sugars. It is found in higher eukaryotes where it is believed to function as a dimer and requires K(+) and ATP to be active. In humans, hepatic KHK deficiency causes fructosuria, a benign inborn error of metabolism.
Probab=99.48 E-value=4.5e-14 Score=97.29 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=43.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhh-HHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDV-LQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~-~~~al~~a~a~aa~~~~~~G~ 59 (82)
++|||+||||+|+|||+++++ ++++ +++|+++|+++|++++++.|.
T Consensus 243 ~vvDt~GAGDsf~agfl~~l~-------~g~~~~~~a~~~a~a~aa~~i~~~G~ 289 (290)
T cd01939 243 RVVDTLGAGDTFNAAVIYALN-------KGPDDLSEALDFGNRVASQKCTGVGF 289 (290)
T ss_pred CcccCCCchHHHHHHHHHHHH-------cCCccHHHHHHHHHHHHHHHHhhhcC
Confidence 489999999999999999999 8995 999999999999999999874
No 35
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=99.48 E-value=1e-13 Score=98.37 Aligned_cols=65 Identities=34% Similarity=0.472 Sum_probs=61.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhcCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVYVPS 80 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~~~~ 80 (82)
.+|+|+||||+|+|||+++++ +++++++++++|+++|+.++++.+. ..++.++++++++++.+++
T Consensus 244 ~vvstVGAGDs~VAGf~~~~~-------~~~~~e~~l~~avA~g~a~~~~~~~--~~~~~~~~~~~~~~v~v~~ 308 (310)
T COG1105 244 QVVSTVGAGDSMVAGFLAGLL-------KGKSLEEALRFAVACGAAAASQKGT--GIPDLDQLKKIYAQVTVEK 308 (310)
T ss_pred ceecCcCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhhcCCC--CCCCHHHHHHHhhheEEEe
Confidence 599999999999999999999 9999999999999999999999986 7899999999999988765
No 36
>cd01944 YegV_kinase_like YegV-like sugar kinase. Found only in bacteria, YegV-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.47 E-value=6.3e-14 Score=96.29 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=43.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIG 58 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G 58 (82)
.++|||||||+|+|||+++++ +|+++++++++|+++|+.++++.|
T Consensus 245 ~vvDt~GAGDaf~ag~l~~~~-------~g~~~~~a~~~a~a~aa~~~~~~G 289 (289)
T cd01944 245 KAVDTIGAGDTHAGGMLAGLA-------KGMSLADAVLLANAAAAIVVTRSG 289 (289)
T ss_pred CCccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhhccCC
Confidence 589999999999999999999 999999999999999999999876
No 37
>cd01943 MAK32 MAK32 kinase. MAK32 is a protein found primarily in fungi that is necessary for the structural stability of L-A particles. The L-A virus particule is a specialized compartment for the transcription and replication of double-stranded RNA, known to infect yeast and other fungi. MAK32 is part of the host machinery used by the virus to multiply.
Probab=99.46 E-value=2.2e-14 Score=101.50 Aligned_cols=46 Identities=17% Similarity=0.245 Sum_probs=44.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
++||||||||+|+|||+++++ +++++++++++|+++|++++++.|.
T Consensus 259 ~vvDttGAGDaF~agfl~~l~-------~g~~~~~al~~a~a~Aa~~v~~~G~ 304 (328)
T cd01943 259 KVVDPTGGGNSFLGGFAAGLA-------LTKSIDEACIYGSVAASFAIEQVGL 304 (328)
T ss_pred cccCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHccCCC
Confidence 589999999999999999999 9999999999999999999999994
No 38
>cd01942 ribokinase_group_A Ribokinase-like subgroup A. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.45 E-value=1.2e-13 Score=94.14 Aligned_cols=46 Identities=33% Similarity=0.311 Sum_probs=44.3
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
++|||+||||+|+|||+++++ ++.++++++++|+++|++++++.|+
T Consensus 233 ~vvDttGAGDaf~a~~i~~l~-------~g~~l~~al~~a~~~Aa~~~~~~G~ 278 (279)
T cd01942 233 KVVDTTGAGDAFRAGFLYGLL-------RGYDLEESLRLGNLAASLKVERRGA 278 (279)
T ss_pred CCcCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHcccCC
Confidence 589999999999999999999 9999999999999999999999985
No 39
>cd01167 bac_FRK Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate. This is in contrast to FRKs [or ketohexokinases (KHKs)] from mammalia and halophilic archaebacteria, which phosphorylate fructose to fructose-1-phosphate.
Probab=99.43 E-value=1.3e-13 Score=94.52 Aligned_cols=46 Identities=41% Similarity=0.551 Sum_probs=44.0
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchh-------hHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQD-------VLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~-------~~~~al~~a~a~aa~~~~~~G~ 59 (82)
+++|||||||+|+|||+++++ +|. ++++++++|+++|+.+|++.|+
T Consensus 242 ~vvDttGAGD~f~a~~~~~l~-------~g~~~~~~~~~~~~a~~~a~~~aa~~~~~~G~ 294 (295)
T cd01167 242 EVVDTTGAGDAFVAGLLAQLL-------SRGLLALDEDELAEALRFANAVGALTCTKAGA 294 (295)
T ss_pred ceeeCCCccHHHHHHHHHHHH-------hCCcccccHHHHHHHHHHHHHhhHHHhcccCC
Confidence 589999999999999999999 888 9999999999999999999986
No 40
>PRK11316 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase; Provisional
Probab=99.42 E-value=3.3e-13 Score=98.95 Aligned_cols=60 Identities=22% Similarity=0.248 Sum_probs=55.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQ 75 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~ 75 (82)
.++||+||||+|.|||+++++ +|+++++++++|+++|++++++.|+.. ++.++++++++.
T Consensus 255 ~vvDttGAGDaF~aa~~~~l~-------~g~~~~~al~~A~a~Aa~~v~~~G~~~--~~~~~l~~~l~~ 314 (473)
T PRK11316 255 EVYDVTGAGDTVISVLAAALA-------AGNSLEEACALANAAAGVVVGKLGTST--VSPIELENALRG 314 (473)
T ss_pred CCCCCCCCcHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHhhcccCCCcc--CCHHHHHHHHhc
Confidence 479999999999999999999 999999999999999999999999743 688999888874
No 41
>cd01166 KdgK 2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the glycolysis and therefore use polymers, like pectin and xylan as carbon sources.
Probab=99.39 E-value=4.5e-13 Score=91.75 Aligned_cols=46 Identities=37% Similarity=0.386 Sum_probs=44.2
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
.++||+||||+|+|||++++. +|.++++++++|+++|+.++++.|+
T Consensus 248 ~~vdt~GAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~i~~~G~ 293 (294)
T cd01166 248 EVVDTTGAGDAFAAGFLAGLL-------EGWDLEEALRFANAAAALVVTRPGD 293 (294)
T ss_pred ccccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999999 9999999999999999999999985
No 42
>cd01164 FruK_PfkB_like 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.
Probab=99.37 E-value=7.1e-13 Score=91.18 Aligned_cols=46 Identities=33% Similarity=0.484 Sum_probs=43.9
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
+++||+||||+|.|||++++. +|+++++++++|+++|++++++.|+
T Consensus 243 ~vvDttGAGDaf~a~~i~~l~-------~g~~~~~a~~~A~~~Aa~~~~~~G~ 288 (289)
T cd01164 243 KVVSTVGAGDSMVAGFVAGLA-------QGLSLEEALRLAVAAGSATAFSPGT 288 (289)
T ss_pred cccCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcCccC
Confidence 489999999999999999999 9999999999999999999999885
No 43
>cd01941 YeiC_kinase_like YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.
Probab=99.34 E-value=1.2e-12 Score=89.61 Aligned_cols=43 Identities=35% Similarity=0.425 Sum_probs=40.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
++|||+||||+|.|||+++++ +|+++++++++|+++|+++|+.
T Consensus 246 ~~vDttGAGDaf~a~~~~~l~-------~g~~~~~al~~a~~~Aa~~~~~ 288 (288)
T cd01941 246 TVVNVTGAGDAFVAGLVAGLL-------EGMSLDDSLRFAQAAAALTLES 288 (288)
T ss_pred cceeCCCcHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhcC
Confidence 589999999999999999999 9999999999999999999863
No 44
>cd01946 ribokinase_group_C Ribokinase-like subgroup C. Found only in bacteria, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.31 E-value=2.8e-12 Score=87.91 Aligned_cols=50 Identities=18% Similarity=0.327 Sum_probs=42.2
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
++|||||||+|+|||++++.+... . ...++++++++|+++|++++++.|+
T Consensus 226 ~vDttGAGDaF~Agfl~~l~~~~~-~-~~~~~~~a~~~a~~~aa~~~~~~G~ 275 (277)
T cd01946 226 VFDPTGAGDTFAGGFIGYLASQKD-T-SEANMRRAIIYGSAMASFCVEDFGT 275 (277)
T ss_pred cCCCCCchHHHHHHHHHHHHhCCC-c-chhhHHHHHHHhHHHHhhhhhhcCC
Confidence 789999999999999999983210 0 2257999999999999999999986
No 45
>cd01937 ribokinase_group_D Ribokinase-like subgroup D. Found in bacteria and archaea, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time.
Probab=99.26 E-value=8.2e-12 Score=84.43 Aligned_cols=42 Identities=29% Similarity=0.256 Sum_probs=39.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW 55 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~ 55 (82)
.++||+||||+|+|||+++++ +|+++++++++|+++|+++++
T Consensus 213 ~~vdt~GAGD~f~a~~~~~l~-------~g~~~~~a~~~a~~~aa~~i~ 254 (254)
T cd01937 213 DVVDPTGAGDVFLAAFLYSRL-------SGKDIKEAAEFAAAAAAKFIE 254 (254)
T ss_pred eeccCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHhC
Confidence 479999999999999999999 899999999999999999874
No 46
>KOG2947 consensus Carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.25 E-value=3.3e-12 Score=88.59 Aligned_cols=52 Identities=19% Similarity=0.227 Sum_probs=47.2
Q ss_pred CCCCCCccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 2 VLITPFTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 2 ~~~~~~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
-.++|++|||+|+||+|.|||+|+++. ++.++.||++||+++|+.++...|-
T Consensus 247 a~~ppkvVD~lg~~DtF~A~vIyA~lk------~~r~l~eAvdfg~rvas~Kl~g~Gf 298 (308)
T KOG2947|consen 247 AFKPPKVVDTLGAGDTFNAGVIYALLK------QGRSLAEAVDFGNRVASKKLGGQGF 298 (308)
T ss_pred CCCCccceeeccCCCcchHHHHHHHHH------hhhhHHHHHHHHHHhhhcccccccc
Confidence 367889999999999999999999763 7889999999999999999998873
No 47
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=99.16 E-value=3.3e-11 Score=86.03 Aligned_cols=50 Identities=26% Similarity=0.362 Sum_probs=46.6
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPT 65 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~ 65 (82)
++|||+||||+|++||++++. +|.++++|++.|.-+++.++...|+ .+|+
T Consensus 289 ~ivDtnGAGDaFvgGFl~~l~-------qg~~l~~cir~g~~aa~~vi~~~G~--~~p~ 338 (343)
T KOG2854|consen 289 EIVDTNGAGDAFVGGFLSQLV-------QGKSLEECIRAGSYAASHVIRRVGC--TVPE 338 (343)
T ss_pred eeeeCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHhhheeeccCC--CCCC
Confidence 599999999999999999999 9999999999999999999999997 4454
No 48
>TIGR00687 pyridox_kin pyridoxal kinase. ThiD and related proteins form an outgroup.
Probab=98.90 E-value=1.8e-09 Score=74.87 Aligned_cols=36 Identities=28% Similarity=0.383 Sum_probs=34.2
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAG 50 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~a 50 (82)
++||+||||+|+|||+++++ +|.++++++++|+++-
T Consensus 215 ~~d~~GaGD~f~A~~l~~l~-------~g~~~~~al~~A~~~v 250 (286)
T TIGR00687 215 MRQPVGTGDLIAALLLATLL-------HGNSLKEALEKTVSAV 250 (286)
T ss_pred CCCCCChHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHH
Confidence 58999999999999999999 9999999999999993
No 49
>PRK12413 phosphomethylpyrimidine kinase; Provisional
Probab=98.76 E-value=1.6e-08 Score=68.88 Aligned_cols=44 Identities=11% Similarity=0.056 Sum_probs=39.6
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
..+|++||||+|.|||++++. +|+++++++++|.++-..+++..
T Consensus 200 ~~~~~~GaGDaf~a~~~~~l~-------~g~~l~ea~~~A~~~~~~~l~~~ 243 (253)
T PRK12413 200 LEKNNIGAGCTFASSIASQLV-------KGKSPLEAVKNSKDFVYQAIQQS 243 (253)
T ss_pred cCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999 99999999999998877777653
No 50
>PRK07105 pyridoxamine kinase; Validated
Probab=98.75 E-value=1.4e-08 Score=70.40 Aligned_cols=46 Identities=22% Similarity=0.125 Sum_probs=41.3
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCC
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGA 59 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~ 59 (82)
..+|++||||+|.|||+++++ +|+++++++++|.++...++.....
T Consensus 213 ~~~~~~GaGD~f~aa~~~~l~-------~g~~l~~av~~A~~~~~~~i~~~~~ 258 (284)
T PRK07105 213 IPAHYPGTGDIFTSVITGSLL-------QGDSLPIALDRAVQFIEKGIRATLG 258 (284)
T ss_pred cCCCcCChhHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999999999999999 9999999999999999888876543
No 51
>cd01173 pyridoxal_pyridoxamine_kinase Pyridoxal kinase plays a key role in the synthesis of the active coenzyme pyridoxal-5'-phosphate (PLP), by catalyzing the phosphorylation of the precursor vitamin B6 in the presence of Zn2+ and ATP. Mammals are unable to synthesize PLP de novo and require its precursors in the form of vitamin B6 (pyridoxal, pyridoxine, and pyridoxamine) from their diet. Pyridoxal kinase encoding genes are also found in many other species including yeast and bacteria.
Probab=98.73 E-value=2.2e-08 Score=68.11 Aligned_cols=42 Identities=21% Similarity=0.152 Sum_probs=37.8
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
++|++||||+|.|||++++. +|+++++++++|++.-..++..
T Consensus 210 ~~~~~GaGD~f~a~~~~~l~-------~g~~~~~a~~~A~~~~~~~i~~ 251 (254)
T cd01173 210 PAYFNGTGDLFAALLLARLL-------KGKSLAEALEKALNFVHEVLEA 251 (254)
T ss_pred CCCcCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999 9999999999999887666543
No 52
>PRK08573 phosphomethylpyrimidine kinase; Provisional
Probab=98.67 E-value=9.1e-08 Score=70.64 Aligned_cols=43 Identities=19% Similarity=0.006 Sum_probs=39.9
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
.++||+||||+|.|+|+++++ +|+++++++++|+.+...+++.
T Consensus 202 ~~~dt~GAGDaFsAa~aa~l~-------~G~~l~eAl~~A~~~~~~al~~ 244 (448)
T PRK08573 202 ESGCTHGTGCSFSAAIAAGLA-------KGLDPEEAIKTAKKFITMAIKY 244 (448)
T ss_pred CCCCCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999 9999999999999999888883
No 53
>PRK05756 pyridoxamine kinase; Validated
Probab=98.66 E-value=4e-08 Score=68.24 Aligned_cols=41 Identities=24% Similarity=0.217 Sum_probs=38.0
Q ss_pred cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
+|++||||+|.|+|+++++ +|+++++++++|++....++..
T Consensus 215 v~~~GaGD~f~a~~~a~l~-------~g~~~~~al~~A~~~~~~~i~~ 255 (286)
T PRK05756 215 RQPVGVGDLTSALFLARLL-------QGGSLEEALEHTTAAVYEVMAR 255 (286)
T ss_pred CCCCChHHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 6999999999999999999 9999999999999988877765
No 54
>TIGR00097 HMP-P_kinase phosphomethylpyrimidine kinase. This model represents phosphomethylpyrimidine kinase, the ThiD protein of thiamine biosynthesis. The protein is commonly observed within operons containing other thiamine biosynthesis genes. Numerous examples are fusion proteins with other thiamine-biosynthetic domains. Saccaromyces has three recent paralogs, two of which are isofunctional and score above the trusted cutoff. The third shows a longer branch length in a phylogenetic tree and scores below the trusted cutoff, as do putative second copies in a number of species.
Probab=98.65 E-value=5.6e-08 Score=66.49 Aligned_cols=44 Identities=23% Similarity=0.051 Sum_probs=40.5
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
.++|++|+||+|.|+|++.+. +|+++++++++|.++....+...
T Consensus 198 ~~~d~~GaGD~f~aalaa~la-------~g~~l~eA~~~A~~~~~~~i~~~ 241 (254)
T TIGR00097 198 ETKNTHGTGCTLSAAIAANLA-------KGLSLKEAVKEAKEFVTGAIRYG 241 (254)
T ss_pred CCCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999 99999999999999998888763
No 55
>PRK12412 pyridoxal kinase; Reviewed
Probab=98.61 E-value=8.4e-08 Score=66.28 Aligned_cols=44 Identities=20% Similarity=0.104 Sum_probs=39.8
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
..+||+||||+|.|+|+++++ +|+++++++++|.++...++...
T Consensus 204 ~~~~t~GaGD~f~aa~aa~l~-------~g~~l~eA~~~A~~~~~~~i~~~ 247 (268)
T PRK12412 204 DTTNTHGAGCTYSAAITAELA-------KGKPVKEAVKTAKEFITAAIRYS 247 (268)
T ss_pred CCCCCCchHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 368999999999999999999 99999999999999988777653
No 56
>PRK06427 bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed
Probab=98.60 E-value=8.7e-08 Score=65.64 Aligned_cols=43 Identities=23% Similarity=0.144 Sum_probs=39.8
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
.+|++|+||+|.|+|+++++ +|.++.+++++|.+....++.+.
T Consensus 207 ~~~~~GaGD~f~a~l~~~l~-------~g~~l~~A~~~A~~~~~~~i~~~ 249 (266)
T PRK06427 207 TKNTHGTGCTLSAAIAAELA-------KGASLLDAVQTAKDYVTRAIRHA 249 (266)
T ss_pred CCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999 99999999999999998888764
No 57
>cd01169 HMPP_kinase 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.
Probab=98.50 E-value=2.3e-07 Score=62.43 Aligned_cols=41 Identities=24% Similarity=0.167 Sum_probs=37.0
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW 55 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~ 55 (82)
++|++|+||+|.|+|++++. +|.++.+++++|.+.-..++.
T Consensus 200 ~~~~~GaGD~f~a~l~a~l~-------~g~~~~~A~~~A~~~~~~~i~ 240 (242)
T cd01169 200 TKNTHGTGCTLSSAIAANLA-------KGLSLEEAVREAKEYVTQAIR 240 (242)
T ss_pred CCCCCChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999 999999999999988765553
No 58
>PRK08176 pdxK pyridoxal-pyridoxamine kinase/hydroxymethylpyrimidine kinase; Reviewed
Probab=98.39 E-value=6.5e-07 Score=62.35 Aligned_cols=43 Identities=19% Similarity=0.147 Sum_probs=37.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
..+|++|+||+|.|+|++++. +|.++++++++|...-..++..
T Consensus 224 ~~~~~~GaGD~faa~~~a~l~-------~g~~l~~Av~~A~~~v~~~i~~ 266 (281)
T PRK08176 224 VDTDLKGTGDLFCAELVSGLL-------KGKALTDAAHRAGLRVLEVMRY 266 (281)
T ss_pred cCCCCCChhHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999 9999999999999776655543
No 59
>COG2870 RfaE ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=98.39 E-value=1.4e-07 Score=69.44 Aligned_cols=56 Identities=25% Similarity=0.266 Sum_probs=51.1
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~ 71 (82)
.|-|-|||||+.+|.|..++. .|.++++|..+||++|+.++.+.|+ ...+.+|+..
T Consensus 254 EVyDVTGAGDTVIa~la~~la-------aG~s~~eAc~lAN~AagiVVgKlGT--atvs~~EL~n 309 (467)
T COG2870 254 EVYDVTGAGDTVIAVLAAALA-------AGASLEEACELANAAAGIVVGKLGT--ATVSPEELEM 309 (467)
T ss_pred eeeeccCCCchHHHHHHHHHH-------cCCCHHHHHHHhhhhcceEEeeccc--eeecHHHHHh
Confidence 578999999999999999999 9999999999999999999999997 4567777765
No 60
>PRK12616 pyridoxal kinase; Reviewed
Probab=98.37 E-value=8.1e-07 Score=61.50 Aligned_cols=42 Identities=19% Similarity=0.071 Sum_probs=38.3
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
.+|++|+||+|.|+|++++. +|.++++++++|......++..
T Consensus 208 ~~~t~GaGD~fsaalaa~l~-------~g~~l~~Av~~A~~~~~~~i~~ 249 (270)
T PRK12616 208 TPYTHGAGCTFSAAVTAELA-------KGSEVKEAIYAAKEFITAAIKE 249 (270)
T ss_pred CCCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999 9999999999999888777765
No 61
>PTZ00347 phosphomethylpyrimidine kinase; Provisional
Probab=98.07 E-value=7.3e-06 Score=61.27 Aligned_cols=42 Identities=19% Similarity=0.109 Sum_probs=37.4
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
++|++|+||+|.|+|++++. +|.++.+++++|.+.-...+..
T Consensus 437 ~~~~~GaGD~fsaaiaa~la-------~G~~l~eAv~~A~~~v~~~i~~ 478 (504)
T PTZ00347 437 TINTHGTGCTLASAISSFLA-------RGYTVPDAVERAIGYVHEAIVR 478 (504)
T ss_pred CCCCCChHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999 9999999999998776665554
No 62
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=98.01 E-value=9.4e-06 Score=60.65 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=39.5
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
.+|++|+||+|.|+|++.+. +|+++++++++|......++...
T Consensus 212 ~~~t~GaGD~fsaaiaa~l~-------~G~~l~eAv~~A~~~v~~ai~~~ 254 (502)
T PLN02898 212 TRNTHGTGCTLASCIAAELA-------KGSDMLSAVKVAKRYVETALEYS 254 (502)
T ss_pred CCCCCchhhhHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHhh
Confidence 47899999999999999999 99999999999999988888764
No 63
>cd01171 YXKO-related B.subtilis YXKO protein of unknown function and related proteins. Based on the conservation of the ATP binding site, the substrate binding site and the Mg2+binding site and structural homology this group is a member of the ribokinase-like superfamily.
Probab=97.92 E-value=2.3e-05 Score=53.37 Aligned_cols=44 Identities=20% Similarity=0.026 Sum_probs=37.7
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
..++|+|+||+|.|.+.+.+. ++.++.+++++|+.+.+.+....
T Consensus 193 ~~~~~~GaGD~lag~iaa~la-------~g~~~~eA~~~A~~~~~~a~~~~ 236 (254)
T cd01171 193 PGLATGGSGDVLAGIIAALLA-------QGLSPLEAAALAVYLHGLAGDLA 236 (254)
T ss_pred cccccCchHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999999999777777777 89999999999998888887754
No 64
>PTZ00344 pyridoxal kinase; Provisional
Probab=97.89 E-value=2.7e-05 Score=54.57 Aligned_cols=41 Identities=17% Similarity=0.053 Sum_probs=34.1
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
-++++|+||+|.|+|++.+. ++ ++.+++++|.+.-..++..
T Consensus 218 ~~~~~GaGD~f~A~~~a~l~-------~g-~~~~a~~~A~a~~~~~i~~ 258 (296)
T PTZ00344 218 EGRYTGTGDLFAALLLAFSH-------QH-PMDLAVGKAMGVLQDIIKA 258 (296)
T ss_pred CCCCCCchHHHHHHHHHHHh-------cC-CHHHHHHHHHHHHHHHHHH
Confidence 45789999999999997777 77 9999999998877655554
No 65
>PRK14713 multifunctional hydroxymethylpyrimidine phosphokinase/4-amino-5-aminomethyl-2-methylpyrimidine hydrolase; Provisional
Probab=97.80 E-value=4.2e-05 Score=57.67 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=33.5
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGI 51 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa 51 (82)
++||+|+||+|.|+|++.+. +|.++.+++++|.+.-.
T Consensus 231 ~~~t~GaGD~fsaalaa~La-------~G~~l~eAv~~A~~~v~ 267 (530)
T PRK14713 231 TRNTHGTGCSLSSALATRLG-------RGGDWAAALRWATAWLH 267 (530)
T ss_pred CCCCCcHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHH
Confidence 57999999999999999999 99999999999987433
No 66
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=97.75 E-value=5.4e-05 Score=59.31 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=38.3
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
.+||+|+||+|.|+|++.+. +|.++++++++|...-..++..
T Consensus 443 ~~~t~GaGDtfsaaiaa~La-------~G~sl~eAv~~A~~~v~~~i~~ 484 (755)
T PRK09517 443 TTNSHGTGCSLSAALATLIA-------AGESVEKALEWATRWLNEALRH 484 (755)
T ss_pred CCCCcChHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999 9999999999999887777755
No 67
>PLN02978 pyridoxal kinase
Probab=96.86 E-value=0.0026 Score=45.02 Aligned_cols=40 Identities=25% Similarity=0.213 Sum_probs=31.3
Q ss_pred CccchHHHHHHHHHHHHhcCCccccch-hhHHHHHHHHHHHHHHHHhh
Q 040065 10 DRTGSGDAVVAAILRKLTTCPEMFENQ-DVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 10 DttGAGDaf~agfl~~l~~~~~~~~~~-~~~~~al~~a~a~aa~~~~~ 56 (82)
.+.|+||+|.|.+++.+. ++ .++++++++|...-..++..
T Consensus 227 ~~~GtGD~fsA~laa~l~-------~g~~~l~~A~~~A~~~v~~~i~~ 267 (308)
T PLN02978 227 YFTGTGDLMAALLLGWSH-------KYPDNLDKAAELAVSSLQAVLRR 267 (308)
T ss_pred CCCCchHHHHHHHHHHHh-------cCCcCHHHHHHHHHHHHHHHHHH
Confidence 358999999998777777 66 68999999998766555544
No 68
>TIGR00196 yjeF_cterm yjeF C-terminal region, hydroxyethylthiazole kinase-related. The present model may hit hydroxyethylthiazole kinase, an enzyme associated with thiamine biosynthesis.
Probab=96.82 E-value=0.0073 Score=41.74 Aligned_cols=59 Identities=17% Similarity=0.047 Sum_probs=37.0
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHH---HHHHHHHHhhc-CCCCCCCCHHHHHHHHHh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFA---VAAGIIAQWTI-GAVRGFPTESATQNLKEQ 75 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a---~a~aa~~~~~~-G~~~~~~~~~~i~~~~~~ 75 (82)
..+++|+||+ ++|++.+++- ++.++.+++..| ...++..+.+. |.. . .+..++.+.+.+
T Consensus 206 ~~~~~GaGD~-lag~iaa~la------~g~~~~~A~~~a~~~~~~a~~~~~~~~g~~-~-~~~~dl~~~i~~ 268 (272)
T TIGR00196 206 ALAKGGTGDV-LAGLIGGLLA------QNLDPFDAACNAAFAHGLAGDLALKNHGAY-G-LTALDLIEKIPR 268 (272)
T ss_pred ccCCCCchHH-HHHHHHHHHh------CCCCHHHHHHHHHHHHHHHHHHHHHhcCCC-C-cCHHHHHHHHHH
Confidence 5678999999 5555555541 778888998766 56666655444 531 2 345666555543
No 69
>PF08543 Phos_pyr_kin: Phosphomethylpyrimidine kinase; InterPro: IPR013749 This enzyme 2.7.4.7 from EC is part of the Thiamine pyrophosphate (TPP) synthesis pathway, TPP is an essential cofactor for many enzymes []. ; PDB: 2DDW_B 2DDO_B 2DDM_A 3IBQ_A 3H74_A 3HYO_A 1UB0_A 1VI9_D 1TD2_B 2PHP_D ....
Probab=96.27 E-value=0.011 Score=40.38 Aligned_cols=40 Identities=20% Similarity=0.052 Sum_probs=34.8
Q ss_pred cCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065 9 CDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW 55 (82)
Q Consensus 9 vDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~ 55 (82)
.+..|.||.|.+.|+..+. +|++++++++.|...-..++.
T Consensus 194 ~~~~GTGd~fss~laa~l~-------~g~~l~~Av~~A~~~v~~~i~ 233 (246)
T PF08543_consen 194 GSFHGTGDLFSSALAAFLA-------KGYSLEEAVEKAKNFVRRAIK 233 (246)
T ss_dssp SGCTTHHHHHHHHHHHHHH-------TTSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCCchhHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHH
Confidence 5678999999999999999 999999999999876655554
No 70
>cd01170 THZ_kinase 4-methyl-5-beta-hydroxyethylthiazole (Thz) kinase catalyzes the phosphorylation of the hydroxylgroup of Thz. A reaction that allows cells to recycle Thz into the thiamine biosynthesis pathway, as an alternative to its synthesis from cysteine, tyrosine and 1-deoxy-D-xylulose-5-phosphate.
Probab=95.77 E-value=0.058 Score=37.01 Aligned_cols=40 Identities=28% Similarity=0.037 Sum_probs=32.0
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQ 54 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~ 54 (82)
+.+..|+||+|.|.+...+. +|.++.+++..|...-..+.
T Consensus 181 ~~~v~GtGdtLa~aiAa~LA-------~g~~~~~A~~~A~~~~~~a~ 220 (242)
T cd01170 181 LTKITGTGCLLGAVIAAFLA-------VGDDPLEAAVSAVLVYGIAG 220 (242)
T ss_pred ccCCCchHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHHH
Confidence 44568999999999999999 88899999888865444443
No 71
>PTZ00493 phosphomethylpyrimidine kinase; Provisional
Probab=95.09 E-value=0.056 Score=38.97 Aligned_cols=40 Identities=15% Similarity=0.007 Sum_probs=33.9
Q ss_pred CccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 10 DttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
++-|.||+|.+++++.|+ +|.++.++++.|...-..++..
T Consensus 246 ~~hGTGc~fASAIAa~LA-------~G~~l~~Av~~A~~fv~~aI~~ 285 (321)
T PTZ00493 246 DIHGTGCTLSTAIACYLA-------KKHNILQSCIESKKYIYNCIRY 285 (321)
T ss_pred CCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999 9999999999998665555544
No 72
>COG2240 PdxK Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme metabolism]
Probab=95.02 E-value=0.065 Score=38.09 Aligned_cols=41 Identities=27% Similarity=0.188 Sum_probs=35.3
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW 55 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~ 55 (82)
..+.+|-||.|.|-|+.+++ +|.++.+++..+..+-...+.
T Consensus 209 ~~~~~GtGDL~sallla~lL-------~g~~~~~al~~~~~~V~evl~ 249 (281)
T COG2240 209 PFIPNGTGDLFSALLLARLL-------EGLSLTQALERATAAVYEVLQ 249 (281)
T ss_pred CCCCCCchHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999 999999999999877665555
No 73
>KOG3009 consensus Predicted carbohydrate kinase, contains PfkB domain [General function prediction only]
Probab=94.54 E-value=0.01 Score=45.08 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=36.4
Q ss_pred CccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhh
Q 040065 7 FTCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWT 56 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~ 56 (82)
++|+-.||||+|++||+.++. .+.++.+++.-+..|+-...+.
T Consensus 558 n~vsvsgaGdsf~~g~i~~l~-------~~~~v~es~~gg~~~~ralls~ 600 (614)
T KOG3009|consen 558 NVVSVSGAGDSFNSGVIAGLA-------HNKTVVESLQGGQECARALLST 600 (614)
T ss_pred ceeEeccCCcccccceeehhh-------cCcchHhhccccHHHHHHHHhc
Confidence 478889999999999999999 8899999999986666555544
No 74
>COG0351 ThiD Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [Coenzyme metabolism]
Probab=93.19 E-value=0.2 Score=35.29 Aligned_cols=39 Identities=23% Similarity=0.172 Sum_probs=34.7
Q ss_pred CccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHh
Q 040065 10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQW 55 (82)
Q Consensus 10 DttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~ 55 (82)
+|-|.|.+|.+++.+.|. +|.++.++++.|-..-..++.
T Consensus 206 ~tHGTGCTlSaAIaa~LA-------~G~~l~~AV~~Ak~fv~~AI~ 244 (263)
T COG0351 206 NTHGTGCTLSAAIAANLA-------KGLSLEEAVKKAKEFVTRAIR 244 (263)
T ss_pred CCCCccHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHHHh
Confidence 467999999999999999 999999999999877766666
No 75
>PRK09355 hydroxyethylthiazole kinase; Validated
Probab=92.52 E-value=0.36 Score=33.45 Aligned_cols=39 Identities=21% Similarity=0.048 Sum_probs=30.0
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIA 53 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~ 53 (82)
..+.+|+||++.|.+...+. .+.++.++...|...-..+
T Consensus 185 ~~~v~GtGc~L~~~iaa~lA-------~g~~~~~A~~~A~~~~~~a 223 (263)
T PRK09355 185 MTKVTGTGCLLSAVVAAFAA-------VEKDYLEAAAAACAVYGIA 223 (263)
T ss_pred cCCcccccHHHHHHHHHHHh-------cCCCHHHHHHHHHHHHHHH
Confidence 44558999999999999988 7778888887777544444
No 76
>TIGR00694 thiM hydroxyethylthiazole kinase. This model represents the hydoxyethylthiazole kinase, ThiM, of a number of bacteria, and C-terminal domains of bifunctional thiamine biosynthesis proteins of Saccharomyces cerevisiae and Schizosaccharomyces pombe, in which the N-terminal domain corresponds to the bacterial thiamine-phosphate pyrophosphorylase (EC 2.5.1.3), ThiE.
Probab=83.39 E-value=3 Score=28.60 Aligned_cols=31 Identities=16% Similarity=-0.023 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH
Q 040065 11 RTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA 48 (82)
Q Consensus 11 ttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a 48 (82)
.+|.||++.+.+...+. .+.++.++...|..
T Consensus 183 ~~GtGc~LssaIaa~LA-------~g~~~~~A~~~A~~ 213 (249)
T TIGR00694 183 ITGSGCLLGSVVAAFCA-------VEEDPLDAAISACL 213 (249)
T ss_pred CccchHHHHHHHHHHHh-------cCCCHHHHHHHHHH
Confidence 37999999999988888 77888888877763
No 77
>PHA00438 hypothetical protein
Probab=77.83 E-value=1.8 Score=25.33 Aligned_cols=16 Identities=31% Similarity=0.505 Sum_probs=14.1
Q ss_pred cchHHHHHHHHHHHHh
Q 040065 12 TGSGDAVVAAILRKLT 27 (82)
Q Consensus 12 tGAGDaf~agfl~~l~ 27 (82)
.|-.++|++||+.++.
T Consensus 47 ~G~SE~~IaGfl~Gl~ 62 (81)
T PHA00438 47 AGYSEAFIAGFLAGLQ 62 (81)
T ss_pred cCCcHHHHHHHHHHHH
Confidence 5778999999999985
No 78
>PF10911 DUF2717: Protein of unknown function (DUF2717); InterPro: IPR020121 The proteins in this entry are uncharacterised.
Probab=73.76 E-value=2.7 Score=24.43 Aligned_cols=16 Identities=19% Similarity=0.337 Sum_probs=14.6
Q ss_pred cchHHHHHHHHHHHHh
Q 040065 12 TGSGDAVVAAILRKLT 27 (82)
Q Consensus 12 tGAGDaf~agfl~~l~ 27 (82)
.|..|+|++||+.++.
T Consensus 47 ~G~SE~~I~Gfl~Gl~ 62 (77)
T PF10911_consen 47 QGWSESYILGFLAGLQ 62 (77)
T ss_pred ccccHHHHHHHHHHHH
Confidence 5899999999999985
No 79
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=70.45 E-value=2 Score=32.62 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=17.3
Q ss_pred CccCccchHHHHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLT 27 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~ 27 (82)
+.+.|+|-||+|.||...+++
T Consensus 434 ~P~sTVGLGDtisagaF~~~~ 454 (463)
T PRK03979 434 NPKSTVGLGDTISAGAFVSYL 454 (463)
T ss_pred CCcceeccCcccchhHHHHHH
Confidence 457799999999988777765
No 80
>KOG0174 consensus 20S proteasome, regulatory subunit beta type PSMB6/PSMB9/PRE3 [Posttranslational modification, protein turnover, chaperones]
Probab=60.05 E-value=3.7 Score=28.13 Aligned_cols=43 Identities=21% Similarity=0.158 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCC
Q 040065 12 TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAV 60 (82)
Q Consensus 12 tGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~ 60 (82)
-|.|-+|+=||+-.-.+ .+++++||.+|---+=+++..+.|..
T Consensus 147 gGSGStfIYGf~D~~~r------~nMt~EE~~~fvk~Av~lAi~rDGsS 189 (224)
T KOG0174|consen 147 GGSGSTFIYGFCDANWR------PNMTLEECVRFVKNAVSLAIERDGSS 189 (224)
T ss_pred ccCCceeeeeeehhhcC------CCCCHHHHHHHHHHHHHHHHhccCCC
Confidence 37788888777776654 67889999999988888888888763
No 81
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=59.89 E-value=54 Score=22.54 Aligned_cols=41 Identities=29% Similarity=0.244 Sum_probs=26.9
Q ss_pred ccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHH----HHHHHHHhhcC
Q 040065 11 RTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV----AAGIIAQWTIG 58 (82)
Q Consensus 11 ttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~----a~aa~~~~~~G 58 (82)
+-|.||...|-+..-+. ++.+..++...|+ .+|-...++.|
T Consensus 184 ~gGsGDvLaGii~~lla-------q~~~~~~Aa~~av~lHg~Ag~~~~~~~~ 228 (242)
T PF01256_consen 184 TGGSGDVLAGIIAGLLA-------QGYDPFEAACLAVYLHGRAGDLAAEKYG 228 (242)
T ss_dssp STTHHHHHHHHHHHHHH-------HTSSHHHHHHHHHHHHHHHHHHHCTTCS
T ss_pred CCCcccHHHHHHHHHHH-------ccCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 56899997665555555 7778888888777 33444444444
No 82
>KOG4631 consensus NADH:ubiquinone oxidoreductase, NDUFB3/B12 subunit [Energy production and conversion]
Probab=59.50 E-value=10 Score=22.88 Aligned_cols=22 Identities=14% Similarity=0.055 Sum_probs=19.5
Q ss_pred CCCCCHHHHHHHHHhhcCCCCC
Q 040065 61 RGFPTESATQNLKEQVYVPSMW 82 (82)
Q Consensus 61 ~~~~~~~~i~~~~~~~~~~~~~ 82 (82)
...|.++++++.+.+...++||
T Consensus 20 ~~~pqL~~~~k~La~~GLkDPW 41 (100)
T KOG4631|consen 20 IEGPQLETIQKKLAAKGLKDPW 41 (100)
T ss_pred ccCccHHHHHHHHHHccccCch
Confidence 3568889999999999999999
No 83
>KOG2599 consensus Pyridoxal/pyridoxine/pyridoxamine kinase [Coenzyme transport and metabolism]
Probab=58.04 E-value=29 Score=25.06 Aligned_cols=32 Identities=31% Similarity=0.500 Sum_probs=22.1
Q ss_pred cchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHH
Q 040065 12 TGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV 47 (82)
Q Consensus 12 tGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~ 47 (82)
+|-||-|.|=++..+...+ +..++..++....
T Consensus 223 tGTGDLfsaLLla~~~~~~----~~~~l~~a~e~~l 254 (308)
T KOG2599|consen 223 TGTGDLFSALLLAWLHESP----DNDDLSKAVEQVL 254 (308)
T ss_pred ecccHHHHHHHHHHHhcCC----CcchHHHHHHHHH
Confidence 7999999999999887544 2244555554444
No 84
>PF11167 DUF2953: Protein of unknown function (DUF2953); InterPro: IPR021338 This family of proteins has no known function.
Probab=54.49 E-value=8.2 Score=20.18 Aligned_cols=17 Identities=41% Similarity=0.462 Sum_probs=15.2
Q ss_pred ccchHHHHHHHHHHHHh
Q 040065 11 RTGSGDAVVAAILRKLT 27 (82)
Q Consensus 11 ttGAGDaf~agfl~~l~ 27 (82)
+.|.+|+...|++++++
T Consensus 2 ~~G~~Daa~Tgi~~G~l 18 (53)
T PF11167_consen 2 TIGLGDAADTGILYGLL 18 (53)
T ss_pred eeeccCHHHHHHHHHHH
Confidence 46899999999999998
No 85
>PRK14039 ADP-dependent glucokinase; Provisional
Probab=49.31 E-value=8.2 Score=29.34 Aligned_cols=21 Identities=24% Similarity=0.363 Sum_probs=16.1
Q ss_pred CccCccchHHHHHHHHHHHHh
Q 040065 7 FTCDRTGSGDAVVAAILRKLT 27 (82)
Q Consensus 7 ~vvDttGAGDaf~agfl~~l~ 27 (82)
+.+.|+|-||++.||-..+++
T Consensus 427 ~P~sTVGlGDtisa~af~~~l 447 (453)
T PRK14039 427 SPVTTVGLGDTLTAGTFLRLL 447 (453)
T ss_pred CCccccccCccccHHHHHHHH
Confidence 467899999999877555554
No 86
>PRK10565 putative carbohydrate kinase; Provisional
Probab=47.96 E-value=49 Score=25.30 Aligned_cols=31 Identities=16% Similarity=0.033 Sum_probs=22.2
Q ss_pred CccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHH
Q 040065 10 DRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV 47 (82)
Q Consensus 10 DttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~ 47 (82)
-+.|.||...|-+..-+. ++.+..++...|+
T Consensus 436 a~~GsGDvLaGiIaalla-------~g~~~~~Aa~~a~ 466 (508)
T PRK10565 436 ASGGMGDVLSGIIGALLG-------QKLSPYDAACAGC 466 (508)
T ss_pred CCCChHHHHHHHHHHHHH-------cCCCHHHHHHHHH
Confidence 358999998776655556 6667777776666
No 87
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases []. This type of polymerases are thought to be involved in UV protection and mutation [, ]. ; PDB: 3PZP_B 2OH2_B 2W7O_B 3IN5_B 1T94_A 2W7P_B 2W8K_A 2AGQ_A 1RYR_A 3RAX_A ....
Probab=46.00 E-value=16 Score=17.28 Aligned_cols=16 Identities=6% Similarity=0.269 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCCCCC
Q 040065 67 SATQNLKEQVYVPSMW 82 (82)
Q Consensus 67 ~~i~~~~~~~~~~~~~ 82 (82)
+++++++..+.+.++|
T Consensus 2 e~v~~~l~~lpi~~~~ 17 (32)
T PF11798_consen 2 EDVPEFLWPLPIRKFW 17 (32)
T ss_dssp HHHHHHHHCSBGGGST
T ss_pred hHHHHHHhcCCHHhhC
Confidence 6788889888888887
No 88
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=45.28 E-value=10 Score=28.84 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=14.7
Q ss_pred CccCccchHHHHHHH-HHHHH
Q 040065 7 FTCDRTGSGDAVVAA-ILRKL 26 (82)
Q Consensus 7 ~vvDttGAGDaf~ag-fl~~l 26 (82)
+.+.|+|-||+|.+| |++.+
T Consensus 420 ~P~sTVGLGDtissgaF~~~~ 440 (446)
T TIGR02045 420 NPKSTVGLGDTISTGAFVSYL 440 (446)
T ss_pred CCcceeccCcccchhHHHHHH
Confidence 456799999999776 44444
No 89
>PF02659 DUF204: Domain of unknown function DUF; InterPro: IPR003810 Uncharacterised domain in proteins of unknown function.
Probab=44.49 E-value=52 Score=17.73 Aligned_cols=13 Identities=31% Similarity=0.161 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHh
Q 040065 15 GDAVVAAILRKLT 27 (82)
Q Consensus 15 GDaf~agfl~~l~ 27 (82)
=|+|..|+.+++.
T Consensus 3 iDaf~vg~~~g~~ 15 (67)
T PF02659_consen 3 IDAFAVGISYGLR 15 (67)
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999998
No 90
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=34.06 E-value=71 Score=20.23 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=19.0
Q ss_pred HHHHHHHHHHhcCCccccchhhHHHHHHHHHHH
Q 040065 17 AVVAAILRKLTTCPEMFENQDVLQRQLRFAVAA 49 (82)
Q Consensus 17 af~agfl~~l~~~~~~~~~~~~~~~al~~a~a~ 49 (82)
.|.+.|+..+. ++++.+++.+-+..+
T Consensus 88 ~~~Ga~l~El~-------~~~~~~~A~~~~~ga 113 (140)
T PF04306_consen 88 PFLGAFLGELL-------RGKDFRRALRAGIGA 113 (140)
T ss_pred HHHHHHHHHHH-------hCCCHHHHHHHHHHH
Confidence 46777777777 778888888766543
No 91
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=32.59 E-value=50 Score=22.05 Aligned_cols=35 Identities=17% Similarity=0.167 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhc
Q 040065 16 DAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTI 57 (82)
Q Consensus 16 Daf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~ 57 (82)
=++.+|++.++. -+.++++++..++..+.++.+..
T Consensus 68 GSllgg~l~~~l-------l~~~~~~~lav~sG~GwYSlsg~ 102 (191)
T PF03956_consen 68 GSLLGGLLASLL-------LGLSLKESLAVASGFGWYSLSGV 102 (191)
T ss_pred HHHHHHHHHHHH-------hcCCHHHHHHHHccCcHHHhHHH
Confidence 367788888887 67889999999998888887654
No 92
>PRK14038 ADP-dependent glucokinase; Provisional
Probab=31.27 E-value=1.3e+02 Score=23.09 Aligned_cols=33 Identities=15% Similarity=0.225 Sum_probs=24.3
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065 35 NQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71 (82)
Q Consensus 35 ~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~ 71 (82)
++..++++|.||..+|+.... .|. +.+.+++++
T Consensus 353 ~~~~~~~aL~f~~~~AaarA~-~G~---i~~~~d~~~ 385 (453)
T PRK14038 353 RGEHVRDALLFAALAAAAKAM-LGN---IEKIDDVRK 385 (453)
T ss_pred CHHHHHHHHHHHHHHHHHHHH-cCC---CCCHHHHHH
Confidence 567899999999988887775 553 355566555
No 93
>PLN02689 Bifunctional isoaspartyl peptidase/L-asparaginase
Probab=29.04 E-value=43 Score=24.33 Aligned_cols=39 Identities=18% Similarity=0.357 Sum_probs=26.4
Q ss_pred ccCccchHHHHHHHHHHHHhcCCcccc-chhhHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFE-NQDVLQRQLRFAVA 48 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~-~~~~~~~al~~a~a 48 (82)
.+.+||-||.|+-..++...... ++ .|++++++++.+..
T Consensus 234 Avs~TG~GE~iir~~~A~~v~~~--m~~~g~s~~~A~~~~i~ 273 (318)
T PLN02689 234 AVSATGKGEAIIRGTVARDVAAV--MEYKGLPLQEAVDYVIK 273 (318)
T ss_pred EEeeecchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHH
Confidence 57789999999877766553110 11 35788888887764
No 94
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=27.24 E-value=1.6e+02 Score=21.15 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcC
Q 040065 15 GDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIG 58 (82)
Q Consensus 15 GDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G 58 (82)
-|+|.+.|+....... .+ ...++++++..+.+.+--.+++..
T Consensus 215 ADC~AGvw~~~~~~~~-~l-~~~di~~al~aa~aiGDD~iq~~~ 256 (292)
T PF04228_consen 215 ADCFAGVWAGHAAEDG-SL-TPGDIEEALNAASAIGDDRIQKRA 256 (292)
T ss_pred HHHHHHHHhhhccccC-Cc-CHHHHHHHHHHHHHhcChHhhhhc
Confidence 4899998887765332 23 456789999988888877766653
No 95
>PRK03979 ADP-specific phosphofructokinase; Provisional
Probab=25.87 E-value=1.9e+02 Score=22.25 Aligned_cols=34 Identities=15% Similarity=0.241 Sum_probs=23.8
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHH
Q 040065 35 NQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNL 72 (82)
Q Consensus 35 ~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~ 72 (82)
+...++++|.||+.+|+... ..| .+.+.++++.-
T Consensus 361 ~~~~~~~aL~f~~~~Aa~rA-~~G---~i~~~ed~~~~ 394 (463)
T PRK03979 361 SEEELRKSLEFATILAATKA-KLG---DIKSIEDLKVG 394 (463)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HcC---CCCCHHHHHHH
Confidence 45788999999998888776 345 34455655543
No 96
>PF13808 DDE_Tnp_1_assoc: DDE_Tnp_1-associated
Probab=25.48 E-value=1.4e+02 Score=17.12 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhhc
Q 040065 16 DAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQNLKEQVY 77 (82)
Q Consensus 16 Daf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~~~~~~~ 77 (82)
|-..-++++-+. ...++.+...||...-..--+..|...+.|+.+.+.+.+..+.
T Consensus 23 ~iL~i~~~a~l~-------G~~~~~~i~~~~~~~~~~l~~~l~~~~~~PS~~Ti~rvl~~ld 77 (90)
T PF13808_consen 23 DILLIALCAVLC-------GADSWREIAEWARAHEEWLRKRLGLPRGVPSHDTIRRVLSRLD 77 (90)
T ss_pred HHHHHHHHHHHH-------ccccHHHHHHHHHHhHHHHHHhcCCCCCCCcHHHHHHHHHHCC
Confidence 344444444444 4467888999998888777777887778999999998887664
No 97
>TIGR02045 P_fruct_ADP ADP-specific phosphofructokinase. Phosphofructokinase is a key enzyme of glycolysis. The phosphate group donor for different subtypes of phosphofructokinase can be ATP, ADP, or pyrophosphate. This family consists of ADP-dependent phosphofructokinases. Members are more similar to ADP-dependent glucokinases (excluded from this family) than to other phosphofructokinases.
Probab=24.88 E-value=1.9e+02 Score=22.08 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=22.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHH
Q 040065 35 NQDVLQRQLRFAVAAGIIAQWTIGAVRGFPTESATQN 71 (82)
Q Consensus 35 ~~~~~~~al~~a~a~aa~~~~~~G~~~~~~~~~~i~~ 71 (82)
+...++++|.||+.+|+... ..|. +.+++++++
T Consensus 347 ~~~~~~~aL~f~~~~Aa~rA-~~G~---i~~~~d~~~ 379 (446)
T TIGR02045 347 SEEELRRSLEFSTILAATRA-SLGN---IENPDDAEA 379 (446)
T ss_pred CHHHHHHHHHHHHHHHHHHH-hcCC---CCCHHHHHH
Confidence 45788999999998888776 4453 344555543
No 98
>COG1971 Predicted membrane protein [Function unknown]
Probab=24.44 E-value=1.8e+02 Score=19.73 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHhcCCccccchhhHHHHHHHHHHHHHHH
Q 040065 15 GDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVAAGIIA 53 (82)
Q Consensus 15 GDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~ 53 (82)
=|+|..++.+++..+ ....++.++.|...+...
T Consensus 15 mDAFav~l~~G~~~~------k~~~~~~L~ia~~fG~f~ 47 (190)
T COG1971 15 MDAFAVSLGKGLAKH------KIRFKEALVIALIFGVFQ 47 (190)
T ss_pred hHHHHHHHHhhhhhc------cccHHHHHHHHHHHHHHH
Confidence 499999999999732 122567776666555443
No 99
>KOG3361 consensus Iron binding protein involved in Fe-S cluster formation [Energy production and conversion]
Probab=23.78 E-value=75 Score=20.60 Aligned_cols=37 Identities=14% Similarity=0.211 Sum_probs=27.4
Q ss_pred ccchHHHHHHH-HHHHHhcCCccccchhhHHHHHHHHHHHHHHHH
Q 040065 11 RTGSGDAVVAA-ILRKLTTCPEMFENQDVLQRQLRFAVAAGIIAQ 54 (82)
Q Consensus 11 ttGAGDaf~ag-fl~~l~~~~~~~~~~~~~~~al~~a~a~aa~~~ 54 (82)
|.|+|-+..+. +..-|. +|++++|+++.-+.-=+--+
T Consensus 86 TFGCGSAIASSS~aTewv-------kgkt~dea~kIkNteIAKeL 123 (157)
T KOG3361|consen 86 TFGCGSAIASSSLATEWV-------KGKTLDEALKIKNTEIAKEL 123 (157)
T ss_pred ecccchHhhhhHHHHHHH-------ccccHHHHHhcccHHHHHhc
Confidence 78999988765 444667 89999999988776544433
No 100
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=22.86 E-value=1.5e+02 Score=17.62 Aligned_cols=35 Identities=14% Similarity=0.143 Sum_probs=22.3
Q ss_pred ccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHH
Q 040065 11 RTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV 47 (82)
Q Consensus 11 ttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~ 47 (82)
-+|+|=+|+.-|+-++.+-... .|.+.+++.++..
T Consensus 12 lsGsgpA~~~~~~eal~~a~v~--~Gl~~~~A~~lv~ 46 (107)
T PF14748_consen 12 LSGSGPAYFFLFIEALADAAVA--QGLPREEARKLVA 46 (107)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHH--TT--HHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHH
Confidence 4799999999999988632211 4555566655554
No 101
>PF02885 Glycos_trans_3N: Glycosyl transferase family, helical bundle domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR017459 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism. This N-terminal domain is found in various family 3 glycosyl transferases, including anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; PDB: 2DSJ_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 1V8G_B 2WK5_C 2J0F_C 2WK6_B 1UOU_A ....
Probab=22.77 E-value=1.4e+02 Score=16.02 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHhcCCccccchhhHHHHHHHHH
Q 040065 15 GDAVVAAILRKLTTCPEMFENQDVLQRQLRFAV 47 (82)
Q Consensus 15 GDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~ 47 (82)
-|.=+|+|+.++.. +|.+..|..-++-
T Consensus 33 s~~qiaAfL~al~~------kget~~Eiag~~~ 59 (66)
T PF02885_consen 33 SDAQIAAFLMALRM------KGETPEEIAGFAK 59 (66)
T ss_dssp -HHHHHHHHHHHHH------H---HHHHHHHHH
T ss_pred CHHHHHHHHHHHHH------hCcCHHHHHHHHH
Confidence 46777888887742 6666666554443
No 102
>cd04702 ASRGL1_like ASRGL1_like domains, a subfamily of the L-Asparaginase type 2-like enzymes. The wider family includes Glycosylasparaginase, Taspase 1 and L-Asparaginase type 2 enzymes. The proenzymes undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue. ASRGL1, or asparaginase-like 1, has been cloned from mammalian testis cDNA libraries. It has been identified as a sperm antigen that may induce the production of autoantibodies following obstruction of the male reproductive tract, e.g. vasectomy.
Probab=21.04 E-value=77 Score=22.47 Aligned_cols=39 Identities=21% Similarity=0.325 Sum_probs=25.8
Q ss_pred ccCccchHHHHHHHHHHHHhcCCccccchhhHHHHHHHHHH
Q 040065 8 TCDRTGSGDAVVAAILRKLTTCPEMFENQDVLQRQLRFAVA 48 (82)
Q Consensus 8 vvDttGAGDaf~agfl~~l~~~~~~~~~~~~~~~al~~a~a 48 (82)
.+.+||-||.|+-..++..... .+..+.+++++.+.+..
T Consensus 178 a~s~TG~GE~iir~~~a~~v~~--~m~~g~s~~eA~~~~i~ 216 (261)
T cd04702 178 AVSTTGHGESIMKVVLARLILD--HMEQGGSAQEAADKAIE 216 (261)
T ss_pred EEEeeccHHHHHHHHHHHHHHH--HHHcCCCHHHHHHHHHH
Confidence 4678999999998777655310 01156678888776653
No 103
>KOG3787 consensus Glutamate/aspartate and neutral amino acid transporters [Amino acid transport and metabolism]
Probab=20.57 E-value=77 Score=24.55 Aligned_cols=15 Identities=40% Similarity=0.565 Sum_probs=13.5
Q ss_pred hHHHHHHHHHHHHhc
Q 040065 14 SGDAVVAAILRKLTT 28 (82)
Q Consensus 14 AGDaf~agfl~~l~~ 28 (82)
-||+|.+|+++++.+
T Consensus 435 lGDa~gagiv~hl~~ 449 (507)
T KOG3787|consen 435 LGDALGAGIVEHLSK 449 (507)
T ss_pred hhhHHHHHHHHHHHH
Confidence 499999999999984
Done!