Query 040066
Match_columns 202
No_of_seqs 113 out of 1163
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 04:46:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040066.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040066hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0667 Tas Predicted oxidored 100.0 3.6E-49 7.8E-54 329.8 19.0 192 9-202 1-195 (316)
2 KOG1575 Voltage-gated shaker-l 100.0 2.9E-45 6.2E-50 303.0 16.9 191 8-202 11-206 (336)
3 COG0656 ARA1 Aldo/keto reducta 100.0 6.6E-45 1.4E-49 295.5 13.7 171 9-202 3-179 (280)
4 PRK09912 L-glyceraldehyde 3-ph 100.0 5.5E-44 1.2E-48 302.6 18.8 192 7-202 11-212 (346)
5 TIGR01293 Kv_beta voltage-depe 100.0 1.1E-43 2.5E-48 297.5 17.7 186 11-202 1-195 (317)
6 cd06660 Aldo_ket_red Aldo-keto 100.0 9.4E-43 2E-47 287.3 18.1 184 11-202 1-188 (285)
7 PRK10625 tas putative aldo-ket 100.0 1.3E-42 2.8E-47 294.3 19.0 190 9-202 1-223 (346)
8 KOG1577 Aldo/keto reductase fa 100.0 8.4E-43 1.8E-47 283.6 13.5 168 11-202 6-197 (300)
9 PRK10376 putative oxidoreducta 100.0 1.4E-41 3E-46 281.7 18.7 187 11-202 9-202 (290)
10 PLN02587 L-galactose dehydroge 100.0 1.3E-41 2.9E-46 284.7 17.0 184 11-202 1-194 (314)
11 PF00248 Aldo_ket_red: Aldo/ke 100.0 2.9E-40 6.3E-45 272.2 13.9 172 23-202 1-177 (283)
12 PRK14863 bifunctional regulato 100.0 3.6E-40 7.7E-45 273.3 14.4 171 18-202 2-181 (292)
13 PRK11565 dkgA 2,5-diketo-D-glu 100.0 3.7E-39 8E-44 265.3 15.2 171 1-202 1-176 (275)
14 PRK11172 dkgB 2,5-diketo-D-glu 100.0 5.2E-39 1.1E-43 263.4 15.7 160 20-202 2-168 (267)
15 COG4989 Predicted oxidoreducta 100.0 1.1E-38 2.4E-43 250.8 10.6 190 9-202 1-198 (298)
16 KOG1576 Predicted oxidoreducta 100.0 1.7E-35 3.7E-40 234.7 15.2 181 9-192 22-210 (342)
17 COG1453 Predicted oxidoreducta 100.0 1.6E-35 3.5E-40 244.2 14.6 177 9-195 1-183 (391)
18 KOG3023 Glutamate-cysteine lig 97.2 0.00054 1.2E-08 54.7 4.2 47 142-188 155-203 (285)
19 COG0635 HemN Coproporphyrinoge 90.1 3.6 7.7E-05 36.1 10.0 109 21-168 148-276 (416)
20 PRK13958 N-(5'-phosphoribosyl) 89.2 1.4 3E-05 34.8 6.2 69 119-189 16-85 (207)
21 PRK07379 coproporphyrinogen II 86.8 6.7 0.00015 34.1 9.5 39 37-75 146-184 (400)
22 PRK01222 N-(5'-phosphoribosyl) 85.3 2.7 5.9E-05 33.2 5.8 68 119-188 18-86 (210)
23 PRK06294 coproporphyrinogen II 85.0 9.6 0.00021 32.8 9.5 26 108-134 168-193 (370)
24 PRK08446 coproporphyrinogen II 83.7 26 0.00056 29.8 11.5 59 108-168 163-231 (350)
25 COG1748 LYS9 Saccharopine dehy 82.8 9.1 0.0002 33.3 8.4 81 42-139 79-159 (389)
26 PRK09058 coproporphyrinogen II 82.2 9.5 0.00021 33.8 8.5 59 108-168 228-304 (449)
27 PRK13796 GTPase YqeH; Provisio 82.2 32 0.00069 29.6 12.9 122 38-172 53-177 (365)
28 PRK10550 tRNA-dihydrouridine s 80.4 34 0.00074 28.8 11.3 131 40-184 73-222 (312)
29 cd02930 DCR_FMN 2,4-dienoyl-Co 79.9 37 0.0008 28.9 11.6 95 85-184 203-304 (353)
30 PRK05660 HemN family oxidoredu 79.1 24 0.00051 30.5 9.7 39 38-76 139-177 (378)
31 cd04740 DHOD_1B_like Dihydroor 79.1 35 0.00075 28.1 12.0 130 40-186 100-260 (296)
32 PLN02363 phosphoribosylanthran 77.8 8.6 0.00019 31.5 6.3 69 120-189 63-132 (256)
33 PF00682 HMGL-like: HMGL-like 75.5 27 0.00059 27.7 8.6 120 38-174 10-142 (237)
34 PRK06582 coproporphyrinogen II 75.5 26 0.00057 30.4 9.0 59 108-168 175-250 (390)
35 COG0135 TrpF Phosphoribosylant 74.5 11 0.00024 29.8 5.9 67 119-189 17-85 (208)
36 PRK13347 coproporphyrinogen II 73.6 22 0.00048 31.4 8.3 59 108-168 217-291 (453)
37 PRK07259 dihydroorotate dehydr 73.5 51 0.0011 27.3 10.5 132 40-185 102-262 (301)
38 PRK09427 bifunctional indole-3 73.3 11 0.00025 33.4 6.3 66 120-189 273-339 (454)
39 PRK05628 coproporphyrinogen II 73.2 59 0.0013 27.9 11.1 58 108-168 173-248 (375)
40 PRK00507 deoxyribose-phosphate 72.6 28 0.0006 27.8 7.9 76 39-126 133-208 (221)
41 PRK08599 coproporphyrinogen II 72.3 35 0.00077 29.2 9.1 25 108-133 165-189 (377)
42 PF03102 NeuB: NeuB family; I 72.3 26 0.00057 28.4 7.7 109 39-169 53-183 (241)
43 PRK05283 deoxyribose-phosphate 71.1 40 0.00086 27.7 8.5 79 40-129 144-227 (257)
44 PRK13803 bifunctional phosphor 70.3 15 0.00032 34.0 6.6 70 120-189 19-89 (610)
45 cd00405 PRAI Phosphoribosylant 69.6 41 0.0009 26.0 8.2 40 128-171 74-113 (203)
46 TIGR00126 deoC deoxyribose-pho 69.6 38 0.00082 26.8 8.0 73 40-127 130-205 (211)
47 PRK08208 coproporphyrinogen II 68.7 55 0.0012 28.7 9.6 59 108-168 206-275 (430)
48 PF05690 ThiG: Thiazole biosyn 68.6 62 0.0013 26.3 9.1 132 22-176 9-142 (247)
49 PRK05414 urocanate hydratase; 68.6 17 0.00037 32.7 6.2 135 47-188 117-268 (556)
50 TIGR01228 hutU urocanate hydra 68.2 16 0.00035 32.7 6.0 128 47-188 108-259 (545)
51 cd02803 OYE_like_FMN_family Ol 68.0 71 0.0015 26.6 13.2 139 37-185 129-310 (327)
52 TIGR02370 pyl_corrinoid methyl 67.5 30 0.00066 26.9 7.0 24 39-62 9-32 (197)
53 TIGR00538 hemN oxygen-independ 65.0 52 0.0011 29.1 8.7 59 108-168 216-290 (455)
54 PF01175 Urocanase: Urocanase; 64.6 23 0.00049 31.9 6.2 129 46-188 106-258 (546)
55 PRK05799 coproporphyrinogen II 64.2 92 0.002 26.6 10.4 18 40-57 133-150 (374)
56 PRK00208 thiG thiazole synthas 63.0 83 0.0018 25.7 12.4 70 107-177 73-143 (250)
57 COG1801 Uncharacterized conser 61.5 91 0.002 25.6 11.3 109 23-139 4-115 (263)
58 cd02070 corrinoid_protein_B12- 61.0 61 0.0013 25.1 7.7 23 39-61 8-30 (201)
59 PRK10415 tRNA-dihydrouridine s 60.2 1E+02 0.0023 25.9 11.8 135 40-186 75-224 (321)
60 COG3172 NadR Predicted ATPase/ 59.9 59 0.0013 25.0 6.9 106 47-156 70-185 (187)
61 COG0135 TrpF Phosphoribosylant 58.6 37 0.00081 26.9 6.0 100 40-167 11-111 (208)
62 PRK05718 keto-hydroxyglutarate 57.5 76 0.0016 25.1 7.6 54 39-95 24-77 (212)
63 PRK10605 N-ethylmaleimide redu 57.4 1.2E+02 0.0027 25.9 14.5 151 37-193 147-329 (362)
64 PRK08195 4-hyroxy-2-oxovalerat 57.0 1.2E+02 0.0027 25.7 14.3 26 37-62 20-45 (337)
65 COG2256 MGS1 ATPase related to 56.8 71 0.0015 28.1 7.7 105 46-169 37-144 (436)
66 PRK00730 rnpA ribonuclease P; 55.8 81 0.0018 23.3 7.2 63 83-155 46-110 (138)
67 COG0218 Predicted GTPase [Gene 55.5 1E+02 0.0022 24.3 8.5 101 41-155 90-198 (200)
68 cd04735 OYE_like_4_FMN Old yel 54.8 1.4E+02 0.0029 25.5 12.4 92 85-184 214-311 (353)
69 TIGR00126 deoC deoxyribose-pho 54.4 1.1E+02 0.0023 24.3 9.7 135 37-188 13-156 (211)
70 cd02933 OYE_like_FMN Old yello 54.4 1.4E+02 0.0029 25.4 13.8 142 37-184 140-312 (338)
71 COG0145 HyuA N-methylhydantoin 54.3 1.5E+02 0.0032 28.0 9.9 103 37-141 134-246 (674)
72 PRK09249 coproporphyrinogen II 53.9 86 0.0019 27.7 8.2 59 108-168 216-290 (453)
73 cd04734 OYE_like_3_FMN Old yel 52.3 1.5E+02 0.0032 25.2 12.9 92 85-184 207-313 (343)
74 cd02932 OYE_YqiM_FMN Old yello 51.7 1.5E+02 0.0032 25.0 12.8 141 37-185 142-319 (336)
75 PRK08255 salicylyl-CoA 5-hydro 51.3 2.2E+02 0.0049 27.1 13.1 140 37-184 539-715 (765)
76 PRK13361 molybdenum cofactor b 51.1 1.5E+02 0.0032 24.9 14.4 135 38-191 44-195 (329)
77 TIGR00035 asp_race aspartate r 50.9 99 0.0021 24.5 7.5 62 108-170 15-88 (229)
78 PRK09061 D-glutamate deacylase 50.4 1.9E+02 0.0042 26.0 10.2 115 44-167 171-286 (509)
79 cd04728 ThiG Thiazole synthase 50.3 1.4E+02 0.003 24.4 12.2 69 108-177 74-143 (248)
80 cd03174 DRE_TIM_metallolyase D 50.1 56 0.0012 26.1 6.0 81 107-189 16-97 (265)
81 PRK05588 histidinol-phosphatas 50.0 1.3E+02 0.0029 24.1 10.5 105 42-162 16-143 (255)
82 COG2089 SpsE Sialic acid synth 50.0 1.6E+02 0.0036 25.1 10.7 114 39-174 87-222 (347)
83 PF00697 PRAI: N-(5'phosphorib 49.8 16 0.00035 28.4 2.7 68 118-189 13-81 (197)
84 PRK14457 ribosomal RNA large s 49.3 1.7E+02 0.0037 25.0 10.7 109 84-193 100-224 (345)
85 COG4464 CapC Capsular polysacc 48.8 1.1E+02 0.0024 24.6 7.1 32 36-67 14-45 (254)
86 cd07937 DRE_TIM_PC_TC_5S Pyruv 48.6 1.5E+02 0.0033 24.3 13.5 125 37-173 16-153 (275)
87 PRK07094 biotin synthase; Prov 47.1 1.3E+02 0.0029 25.0 8.0 119 39-175 70-201 (323)
88 COG0646 MetH Methionine syntha 46.3 1.8E+02 0.0039 24.5 11.0 122 15-137 21-166 (311)
89 PRK13523 NADPH dehydrogenase N 45.4 1.9E+02 0.0041 24.6 10.1 140 37-184 130-303 (337)
90 COG0502 BioB Biotin synthase a 45.1 1.2E+02 0.0025 26.0 7.2 134 39-193 84-234 (335)
91 PF01118 Semialdhyde_dh: Semia 44.6 35 0.00077 24.0 3.6 28 40-67 75-102 (121)
92 TIGR03217 4OH_2_O_val_ald 4-hy 43.8 2E+02 0.0044 24.4 14.4 26 37-62 19-44 (333)
93 cd00959 DeoC 2-deoxyribose-5-p 43.5 1.5E+02 0.0033 22.9 8.0 71 40-125 129-202 (203)
94 COG0274 DeoC Deoxyribose-phosp 43.3 1.7E+02 0.0038 23.5 8.6 87 21-127 127-213 (228)
95 KOG1939 Oxoprolinase [Amino ac 42.2 90 0.002 30.1 6.5 59 37-98 163-225 (1247)
96 COG1751 Uncharacterized conser 42.1 1.2E+02 0.0026 23.0 6.0 73 39-125 11-84 (186)
97 PRK15108 biotin synthase; Prov 41.6 2.2E+02 0.0048 24.2 9.8 106 39-160 76-188 (345)
98 COG3623 SgaU Putative L-xylulo 41.1 39 0.00085 27.5 3.6 47 16-63 65-117 (287)
99 TIGR03822 AblA_like_2 lysine-2 40.9 2.2E+02 0.0047 23.9 12.7 121 39-175 119-251 (321)
100 cd07943 DRE_TIM_HOA 4-hydroxy- 40.8 1.9E+02 0.0042 23.3 13.3 26 37-62 17-42 (263)
101 PRK00164 moaA molybdenum cofac 40.8 2.1E+02 0.0046 23.8 15.1 135 38-191 48-199 (331)
102 COG1902 NemA NADH:flavin oxido 40.1 2.5E+02 0.0053 24.3 13.4 154 36-193 136-326 (363)
103 PF07555 NAGidase: beta-N-acet 40.1 69 0.0015 27.0 5.1 102 34-167 7-114 (306)
104 PF01207 Dus: Dihydrouridine s 39.8 2.1E+02 0.0045 23.9 8.0 133 40-184 64-211 (309)
105 PF00072 Response_reg: Respons 39.2 1.1E+02 0.0024 20.1 6.0 66 120-188 36-103 (112)
106 KOG2264 Exostosin EXT1L [Signa 39.0 98 0.0021 28.5 6.0 54 69-138 632-687 (907)
107 PF09391 DUF2000: Protein of u 38.1 1E+02 0.0022 22.5 5.2 47 40-87 62-108 (133)
108 PRK14466 ribosomal RNA large s 37.1 2.7E+02 0.0059 23.9 9.8 92 105-200 129-226 (345)
109 PRK05692 hydroxymethylglutaryl 36.7 1.3E+02 0.0029 24.9 6.3 64 113-177 28-91 (287)
110 COG2987 HutU Urocanate hydrata 36.5 1.2E+02 0.0025 27.2 6.0 113 69-188 148-268 (561)
111 TIGR01093 aroD 3-dehydroquinat 36.2 2.2E+02 0.0047 22.5 8.8 62 108-169 76-163 (228)
112 TIGR02631 xylA_Arthro xylose i 35.9 2.9E+02 0.0063 23.9 13.1 41 22-62 7-52 (382)
113 cd02810 DHOD_DHPD_FMN Dihydroo 35.8 2.4E+02 0.0052 22.9 11.7 132 40-186 109-272 (289)
114 PRK06256 biotin synthase; Vali 35.5 2.7E+02 0.0058 23.3 9.1 118 39-174 91-221 (336)
115 TIGR03597 GTPase_YqeH ribosome 34.0 3E+02 0.0065 23.5 11.6 120 39-171 48-170 (360)
116 COG1217 TypA Predicted membran 33.7 2.3E+02 0.005 25.8 7.4 62 54-125 68-153 (603)
117 PF05049 IIGP: Interferon-indu 33.1 1.2E+02 0.0026 26.4 5.6 84 53-139 109-202 (376)
118 PRK13015 3-dehydroquinate dehy 33.1 2.1E+02 0.0045 21.4 6.1 80 107-193 26-107 (146)
119 PF15221 LEP503: Lens epitheli 32.8 25 0.00055 21.5 1.0 19 11-29 17-35 (61)
120 cd07948 DRE_TIM_HCS Saccharomy 32.6 2.7E+02 0.006 22.7 12.0 26 38-63 18-43 (262)
121 COG1679 Predicted aconitase [G 32.5 3.4E+02 0.0074 23.7 10.2 104 47-156 209-316 (403)
122 KOG0059 Lipid exporter ABCA1 a 32.3 3.4E+02 0.0074 26.4 9.1 68 108-177 671-767 (885)
123 TIGR01182 eda Entner-Doudoroff 32.3 2.5E+02 0.0054 22.1 7.8 42 39-83 17-58 (204)
124 PLN02923 xylose isomerase 32.2 2.1E+02 0.0046 25.5 6.8 47 118-167 130-188 (478)
125 PRK06552 keto-hydroxyglutarate 32.1 1.9E+02 0.0041 22.9 6.2 41 39-82 22-62 (213)
126 PF04481 DUF561: Protein of un 32.0 2.7E+02 0.0059 22.4 7.0 104 39-157 24-146 (242)
127 PRK08392 hypothetical protein; 31.6 2.5E+02 0.0054 21.9 10.8 105 43-163 15-123 (215)
128 cd00466 DHQase_II Dehydroquina 31.5 1.9E+02 0.0041 21.5 5.6 80 107-193 24-105 (140)
129 PRK14465 ribosomal RNA large s 31.2 3.4E+02 0.0073 23.2 10.5 91 103-193 129-224 (342)
130 PF00724 Oxidored_FMN: NADH:fl 31.0 3.2E+02 0.007 23.1 7.9 140 39-183 139-318 (341)
131 TIGR01278 DPOR_BchB light-inde 30.8 3.2E+02 0.0068 24.7 8.2 100 71-184 69-193 (511)
132 PLN02775 Probable dihydrodipic 30.7 3.2E+02 0.0069 22.8 8.1 58 116-177 68-125 (286)
133 COG1131 CcmA ABC-type multidru 30.0 1.9E+02 0.0041 23.9 6.2 58 116-176 145-205 (293)
134 PRK07455 keto-hydroxyglutarate 29.8 2.6E+02 0.0056 21.5 10.8 39 39-80 21-59 (187)
135 cd00405 PRAI Phosphoribosylant 29.6 1.7E+02 0.0037 22.5 5.6 65 121-188 16-82 (203)
136 COG1809 (2R)-phospho-3-sulfola 29.4 2E+02 0.0043 23.3 5.7 84 39-131 57-147 (258)
137 PRK11267 biopolymer transport 29.1 2.1E+02 0.0045 20.8 5.7 53 108-165 82-134 (141)
138 cd05006 SIS_GmhA Phosphoheptos 28.7 1E+02 0.0022 23.2 4.1 47 126-175 100-146 (177)
139 PRK08609 hypothetical protein; 28.6 4.7E+02 0.01 24.1 9.8 105 44-164 351-466 (570)
140 KOG0173 20S proteasome, regula 28.5 54 0.0012 26.8 2.5 24 34-57 178-201 (271)
141 PF01527 HTH_Tnp_1: Transposas 28.4 19 0.0004 22.9 -0.1 41 39-82 7-47 (76)
142 cd00959 DeoC 2-deoxyribose-5-p 28.2 2.8E+02 0.0061 21.4 9.5 131 39-186 14-151 (203)
143 PLN02746 hydroxymethylglutaryl 27.8 2E+02 0.0042 24.7 6.0 48 32-79 187-236 (347)
144 COG0820 Predicted Fe-S-cluster 27.7 4E+02 0.0087 23.0 9.1 117 84-200 100-231 (349)
145 PRK09413 IS2 repressor TnpA; R 27.5 1.1E+02 0.0025 21.6 3.9 43 37-82 11-53 (121)
146 PRK02399 hypothetical protein; 27.5 2.1E+02 0.0046 25.1 6.2 72 114-191 199-290 (406)
147 PF05378 Hydant_A_N: Hydantoin 27.5 1.6E+02 0.0034 22.5 4.9 45 37-81 129-174 (176)
148 PRK11024 colicin uptake protei 27.5 2.1E+02 0.0045 20.8 5.4 53 108-165 86-138 (141)
149 TIGR02351 thiH thiazole biosyn 27.3 4E+02 0.0086 22.8 11.5 101 39-157 103-215 (366)
150 COG2022 ThiG Uncharacterized e 27.0 3.1E+02 0.0067 22.4 6.5 51 108-158 81-132 (262)
151 TIGR00539 hemN_rel putative ox 26.9 2.3E+02 0.005 24.1 6.4 60 21-80 111-174 (360)
152 PLN02389 biotin synthase 26.9 4.2E+02 0.0091 23.0 10.3 102 39-157 116-227 (379)
153 TIGR02666 moaA molybdenum cofa 26.7 3.8E+02 0.0082 22.4 15.4 133 38-191 42-194 (334)
154 COG2896 MoaA Molybdenum cofact 26.4 4.1E+02 0.0088 22.6 8.6 115 38-177 42-175 (322)
155 PF02679 ComA: (2R)-phospho-3- 26.3 1.3E+02 0.0029 24.4 4.5 86 42-136 84-169 (244)
156 PRK10150 beta-D-glucuronidase; 25.7 2E+02 0.0042 26.5 6.0 58 17-78 288-345 (604)
157 PRK07114 keto-hydroxyglutarate 25.7 1.9E+02 0.0041 23.1 5.2 37 39-78 24-60 (222)
158 cd00814 MetRS_core catalytic c 25.6 1.1E+02 0.0025 25.5 4.2 47 109-158 68-114 (319)
159 PRK14454 ribosomal RNA large s 25.6 4.2E+02 0.0092 22.6 10.2 88 105-193 127-220 (342)
160 PRK07535 methyltetrahydrofolat 25.4 3.7E+02 0.0081 21.9 9.5 26 142-167 173-200 (261)
161 COG4451 RbcS Ribulose bisphosp 25.4 2.6E+02 0.0057 20.1 5.8 62 106-167 18-94 (127)
162 PRK10508 hypothetical protein; 25.3 2.1E+02 0.0045 24.3 5.7 43 106-153 285-327 (333)
163 PRK06806 fructose-bisphosphate 25.3 3.9E+02 0.0085 22.1 8.6 124 45-177 87-222 (281)
164 PRK05283 deoxyribose-phosphate 25.2 3.9E+02 0.0084 22.0 9.5 104 37-154 21-126 (257)
165 COG0419 SbcC ATPase involved i 25.1 1.9E+02 0.0042 28.1 6.1 58 112-171 824-886 (908)
166 TIGR02660 nifV_homocitr homoci 25.1 4.4E+02 0.0095 22.6 9.7 25 38-62 19-43 (365)
167 PF08671 SinI: Anti-repressor 25.1 91 0.002 16.6 2.2 16 42-57 3-18 (30)
168 PLN02666 5-oxoprolinase 25.0 6.6E+02 0.014 25.8 9.8 105 38-143 172-284 (1275)
169 PF10171 DUF2366: Uncharacteri 24.8 1.6E+02 0.0035 22.6 4.5 40 128-167 78-117 (173)
170 COG5310 Homospermidine synthas 24.7 3.7E+02 0.0079 23.3 6.8 76 46-140 51-126 (481)
171 PRK10997 yieM hypothetical pro 24.6 2.9E+02 0.0063 25.0 6.6 65 111-175 398-467 (487)
172 COG0825 AccA Acetyl-CoA carbox 24.6 81 0.0018 26.5 2.9 39 42-80 137-178 (317)
173 PRK14461 ribosomal RNA large s 24.6 4.7E+02 0.01 22.7 9.2 117 84-200 106-247 (371)
174 PRK05904 coproporphyrinogen II 24.4 2.2E+02 0.0047 24.3 5.7 60 21-80 114-177 (353)
175 PRK06015 keto-hydroxyglutarate 24.3 3.5E+02 0.0077 21.2 7.8 41 39-82 13-53 (201)
176 PF00388 PI-PLC-X: Phosphatidy 24.3 53 0.0012 23.9 1.8 20 46-65 30-49 (146)
177 TIGR01088 aroQ 3-dehydroquinat 24.2 2.9E+02 0.0063 20.5 5.5 80 107-193 24-105 (141)
178 TIGR02668 moaA_archaeal probab 23.9 4E+02 0.0088 21.8 12.6 118 38-176 39-171 (302)
179 TIGR03858 LLM_2I7G probable ox 23.8 2.4E+02 0.0052 23.7 5.9 45 106-153 285-329 (337)
180 PRK09140 2-dehydro-3-deoxy-6-p 23.6 2.1E+02 0.0047 22.4 5.2 42 39-83 19-60 (206)
181 KOG3206 Alpha-tubulin folding 23.6 38 0.00082 26.9 0.8 15 53-67 198-212 (234)
182 PF02525 Flavodoxin_2: Flavodo 23.5 3.3E+02 0.0072 20.6 7.5 101 41-153 94-196 (199)
183 PF07021 MetW: Methionine bios 23.4 2.1E+02 0.0045 22.4 4.9 84 107-192 44-140 (193)
184 PF00762 Ferrochelatase: Ferro 23.3 1.3E+02 0.0029 25.3 4.1 65 109-174 206-273 (316)
185 PF10007 DUF2250: Uncharacteri 23.2 54 0.0012 22.4 1.5 50 113-165 9-58 (92)
186 PLN02522 ATP citrate (pro-S)-l 23.2 1.9E+02 0.0041 26.9 5.3 85 68-160 233-325 (608)
187 PRK05395 3-dehydroquinate dehy 23.2 2.6E+02 0.0057 20.8 5.2 80 107-193 26-107 (146)
188 PF01081 Aldolase: KDPG and KH 23.1 3.5E+02 0.0077 21.1 6.2 41 39-82 17-57 (196)
189 smart00148 PLCXc Phospholipase 23.1 71 0.0015 23.2 2.2 21 45-65 31-51 (135)
190 TIGR01496 DHPS dihydropteroate 23.0 4.1E+02 0.009 21.5 12.6 48 120-167 157-207 (257)
191 COG2355 Zn-dependent dipeptida 22.9 4.7E+02 0.01 22.2 8.7 107 42-165 149-260 (313)
192 cd07939 DRE_TIM_NifV Streptomy 22.8 4.1E+02 0.0088 21.4 12.0 25 38-62 16-40 (259)
193 cd00945 Aldolase_Class_I Class 22.7 3.2E+02 0.007 20.2 9.2 46 40-95 11-57 (201)
194 PF01680 SOR_SNZ: SOR/SNZ fami 22.7 43 0.00093 26.0 1.0 15 118-132 87-101 (208)
195 PRK12677 xylose isomerase; Pro 22.5 1E+02 0.0022 26.8 3.4 40 23-62 7-51 (384)
196 PRK05406 LamB/YcsF family prot 22.4 3.2E+02 0.0069 22.3 5.9 81 25-123 13-95 (246)
197 PRK00260 cysS cysteinyl-tRNA s 22.4 2.1E+02 0.0046 25.4 5.5 46 109-158 90-135 (463)
198 cd00739 DHPS DHPS subgroup of 22.3 4.3E+02 0.0093 21.5 11.0 24 144-167 186-209 (257)
199 CHL00162 thiG thiamin biosynth 22.1 4.5E+02 0.0099 21.7 9.3 51 124-175 104-155 (267)
200 TIGR03820 lys_2_3_AblA lysine- 22.1 5.6E+02 0.012 22.7 10.9 105 39-157 138-246 (417)
201 cd00668 Ile_Leu_Val_MetRS_core 22.1 1.5E+02 0.0032 24.7 4.2 48 109-160 81-131 (312)
202 TIGR03278 methan_mark_10 putat 22.0 5.5E+02 0.012 22.6 8.3 84 107-192 54-141 (404)
203 PRK14461 ribosomal RNA large s 21.9 2.9E+02 0.0062 24.0 5.9 61 131-191 232-318 (371)
204 COG4981 Enoyl reductase domain 21.9 6.5E+02 0.014 23.4 8.9 45 142-187 136-185 (717)
205 TIGR01108 oadA oxaloacetate de 21.8 6.5E+02 0.014 23.3 13.4 25 38-62 17-41 (582)
206 TIGR00737 nifR3_yhdG putative 21.7 4.7E+02 0.01 21.7 11.9 133 40-186 73-222 (319)
207 PF06792 UPF0261: Uncharacteri 21.7 3.3E+02 0.0072 24.0 6.2 73 114-192 198-290 (403)
208 PF00154 RecA: recA bacterial 21.6 1.9E+02 0.0042 24.5 4.8 44 118-165 96-139 (322)
209 PF01890 CbiG_C: Cobalamin syn 21.5 3E+02 0.0066 19.5 5.2 62 107-175 12-73 (121)
210 cd03770 SR_TndX_transposase Se 21.5 2E+02 0.0043 20.8 4.3 51 113-163 54-105 (140)
211 COG0800 Eda 2-keto-3-deoxy-6-p 21.4 3.1E+02 0.0066 21.8 5.5 41 40-83 23-63 (211)
212 cd00812 LeuRS_core catalytic c 21.4 1.4E+02 0.0031 24.9 4.0 49 109-158 68-116 (314)
213 PF00101 RuBisCO_small: Ribulo 21.3 2.9E+02 0.0063 19.1 7.8 75 37-135 9-84 (99)
214 TIGR02090 LEU1_arch isopropylm 21.3 5.3E+02 0.011 22.1 10.1 27 37-63 17-43 (363)
215 TIGR02026 BchE magnesium-proto 21.1 5.9E+02 0.013 22.8 8.1 149 40-198 223-383 (497)
216 PF10941 DUF2620: Protein of u 21.1 1.1E+02 0.0024 21.9 2.7 103 38-173 8-110 (117)
217 COG1540 Uncharacterized protei 21.0 1.2E+02 0.0027 24.5 3.3 42 25-67 13-68 (252)
218 PLN03233 putative glutamate-tR 21.0 5.9E+02 0.013 23.3 7.9 59 108-174 58-116 (523)
219 PF13653 GDPD_2: Glycerophosph 20.8 1E+02 0.0022 16.3 1.9 17 45-61 10-26 (30)
220 KOG1892 Actin filament-binding 20.8 56 0.0012 32.1 1.5 34 111-144 8-41 (1629)
221 COG4034 Uncharacterized protei 20.7 1.9E+02 0.0042 24.1 4.3 76 116-192 162-247 (328)
222 COG4626 Phage terminase-like p 20.7 2.6E+02 0.0056 25.7 5.5 41 139-179 409-449 (546)
223 PF11821 DUF3341: Protein of u 20.7 1.6E+02 0.0036 22.5 3.8 36 40-76 11-46 (173)
224 COG3287 Uncharacterized conser 20.5 1.9E+02 0.0041 25.2 4.5 53 111-165 14-66 (379)
225 cd05007 SIS_Etherase N-acetylm 20.5 4.4E+02 0.0096 21.3 6.6 57 117-176 108-164 (257)
226 PRK14463 ribosomal RNA large s 20.4 5.5E+02 0.012 22.0 10.7 85 105-192 129-218 (349)
227 PRK11893 methionyl-tRNA synthe 20.4 1.6E+02 0.0036 26.2 4.4 48 109-159 69-116 (511)
228 PRK14536 cysS cysteinyl-tRNA s 20.3 2.8E+02 0.0061 25.1 5.7 47 109-159 100-146 (490)
229 cd03174 DRE_TIM_metallolyase D 20.3 4.4E+02 0.0095 20.8 11.9 26 38-63 15-40 (265)
230 PRK10200 putative racemase; Pr 20.2 4.5E+02 0.0097 20.9 7.2 61 108-169 15-87 (230)
231 PRK08207 coproporphyrinogen II 20.1 3.6E+02 0.0077 24.3 6.4 69 21-89 280-355 (488)
232 COG0796 MurI Glutamate racemas 20.1 5.1E+02 0.011 21.5 8.9 59 72-137 18-77 (269)
233 COG2040 MHT1 Homocysteine/sele 20.1 5.3E+02 0.011 21.7 9.8 95 41-136 42-156 (300)
234 KOG2499 Beta-N-acetylhexosamin 20.1 1.1E+02 0.0024 27.6 3.0 45 18-66 229-277 (542)
235 PRK07027 cobalamin biosynthesi 20.1 2.7E+02 0.0059 19.9 4.7 33 107-139 14-46 (126)
236 PF02836 Glyco_hydro_2_C: Glyc 20.0 3E+02 0.0066 22.5 5.7 126 17-152 11-144 (298)
237 cd07938 DRE_TIM_HMGL 3-hydroxy 20.0 3.5E+02 0.0076 22.1 6.0 100 34-150 141-252 (274)
No 1
>COG0667 Tas Predicted oxidoreductases (related to aryl-alcohol dehydrogenases) [Energy production and conversion]
Probab=100.00 E-value=3.6e-49 Score=329.84 Aligned_cols=192 Identities=46% Similarity=0.701 Sum_probs=172.5
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC-CCCE
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP-REKV 87 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~-r~~~ 87 (202)
|++++||++|+.||+||||||.+|+. +...+++++.++|++|+++|||+||||+.||. |.||+++|+||++.+ |+++
T Consensus 1 m~~r~lG~~gl~vs~lglG~~~~g~~-~~~~~~~~a~~il~~A~d~Gin~~DTA~~Yg~-g~sE~ilG~~l~~~~~Rd~v 78 (316)
T COG0667 1 MKYRRLGRSGLKVSPLGLGTMTLGGD-TDDEEEAEAIEILDAALDAGINFFDTADVYGD-GRSEEILGEALKERGRRDKV 78 (316)
T ss_pred CCceecCCCCceecceeeeccccCCC-CCchhhhHHHHHHHHHHHcCCCEEECccccCC-CchHHHHHHHHhccCCCCeE
Confidence 67899999999999999999999864 33345668888999999999999999999998 799999999999876 8999
Q ss_pred EEEeccCcccCCCCCc-ccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCC
Q 040066 88 QLATKFGIVKFDMSDV-VVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEA 166 (202)
Q Consensus 88 ~i~tK~~~~~~~~~~~-~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~ 166 (202)
+|+||++......... ....++++|+++++.||+|||+||||+||+||||...+.++++++|.+|+++|+||+||+||+
T Consensus 79 vIaTK~g~~~~~~~~~~~~~~s~~~i~~~v~~SL~RLgtd~IDl~~iH~~d~~~p~~e~~~aL~~l~~~G~ir~iG~S~~ 158 (316)
T COG0667 79 VIATKVGYRPGDPGPNGVFGLSRDHIRRAVEASLKRLGTDYIDLYQLHRPDPETPIEETLEALDELVREGKIRYIGVSNY 158 (316)
T ss_pred EEEEeeccCCCCCCCCccCCCCHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEEecCC
Confidence 9999998765431111 246799999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHhcC-CCeeEEcccCCcccccccccccCCC
Q 040066 167 SPDTIRRAHAV-HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 167 ~~~~l~~~~~~-~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
+.+++.++++. .+++++|.+||+++|+.+.+++++|
T Consensus 159 ~~~~i~~a~~~~~~~~~~Q~~ynl~~R~~e~~l~~~~ 195 (316)
T COG0667 159 SAEQIAEALAVAAPIDSLQPEYNLLERDAEKELLPLC 195 (316)
T ss_pred CHHHHHHHHHhcCCceeecccCccccccchhHHHHHH
Confidence 99999999999 5999999999999998887788776
No 2
>KOG1575 consensus Voltage-gated shaker-like K+ channel, subunit beta/KCNAB [Energy production and conversion]
Probab=100.00 E-value=2.9e-45 Score=302.96 Aligned_cols=191 Identities=45% Similarity=0.745 Sum_probs=172.3
Q ss_pred CccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCC
Q 040066 8 EIPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPRE 85 (202)
Q Consensus 8 ~~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~ 85 (202)
.|+++++|++|++||++|||+|.+. .|+...+++++.+++.+|+++|+|+||||++||. +.||.++|+++++ .+|+
T Consensus 11 ~~~~~~lg~~gl~Vs~lglG~m~~~-~~~~~~~~e~a~~~m~~a~e~Gin~fDtAe~Yg~-~~~E~llg~~i~~~~~~R~ 88 (336)
T KOG1575|consen 11 GMLRRKLGNSGLKVSPLGLGCMGWT-TFGGQIDKEEAFELLDHAYEAGINFFDTAEVYGN-GQSEELLGEFIKSRGWRRD 88 (336)
T ss_pred cceeeeccCCCceecceeecceeee-ccccCCCHHHHHHHHHHHHHcCCCEEehhhhcCC-cccHHHHHHHHHhcCCcCC
Confidence 4889999999999999999997433 3455589999999999999999999999999998 9999999999998 4699
Q ss_pred CEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 86 KVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+++|+||++...... .+...++.++++.++.|+++||++|||+||+||+|+..++++++++|.+++++|+|++||+|+
T Consensus 89 ~vviaTK~~~~~~~~--~~~G~~~~~i~~~~~~s~~rl~~~~IDl~q~Hr~D~~~piee~m~aL~~lve~Gki~yiGlSe 166 (336)
T KOG1575|consen 89 KVVIATKFGFDYGGE--TPRGLSRKHIIEGVRDSLRRLQTDYIDLLQVHRWDPMVPIEETMRALTDLVEQGKIRYWGLSE 166 (336)
T ss_pred cEEEEEEEeccCCCc--CCCCCcHHHHHHHHHHHHHhcCCCeeEEEEEcccCCCCCHHHHHHHHHHHHhcCceEEEEecc
Confidence 999999998766222 245668899999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhcCCC--eeEEcccCCccccccccc-ccCCC
Q 040066 166 ASPDTIRRAHAVHP--VTALQMEWSLWTREIEDE-IVPLC 202 (202)
Q Consensus 166 ~~~~~l~~~~~~~~--~~~~q~~~n~~~~~~~~~-ll~~~ 202 (202)
++.++|++++...+ |.++|++||+++|+.++. ++++|
T Consensus 167 ~sa~~I~~a~~~~~~p~~s~Q~eysl~~Rd~ee~~i~~~c 206 (336)
T KOG1575|consen 167 WSAEEIREAHAVAPIPIVAVQVEYSLLSRDKEERGIIPLC 206 (336)
T ss_pred CCHHHHHHHHHhcCCCceEeeeechhhhcchhhhhHHHHH
Confidence 99999999998876 999999999999996555 88876
No 3
>COG0656 ARA1 Aldo/keto reductases, related to diketogulonate reductase [General function prediction only]
Probab=100.00 E-value=6.6e-45 Score=295.48 Aligned_cols=171 Identities=32% Similarity=0.546 Sum_probs=150.9
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCCC
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPREK 86 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~~ 86 (202)
+++.++ .+|.+||.||||||++++ .+...+++.+|++.|+|+||||..|| ||+.+|+++++ .+|++
T Consensus 3 ~~~~~l-~~g~~iP~iGlGt~~~~~-------~~~~~~av~~Al~~Gyr~IDTA~~Yg----nE~~VG~aI~~s~v~Ree 70 (280)
T COG0656 3 KTKVTL-NNGVEIPAIGLGTWQIGD-------DEWAVRAVRAALELGYRLIDTAEIYG----NEEEVGEAIKESGVPREE 70 (280)
T ss_pred Cceeec-CCCCcccCcceEeeecCC-------chhHHHHHHHHHHhCcceEecHhHhc----CHHHHHHHHHhcCCCHHH
Confidence 445677 567889999999999753 22378999999999999999999999 89999999987 67999
Q ss_pred EEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCccEEEec
Q 040066 87 VQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT--IPIEDTMGELKKLVEEGKIKYIGLS 164 (202)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~vr~iGvs 164 (202)
+||+||+|+... +.+.+.+++++||++||+||+|||++|||.+. ..+.++|++|++++++|+||+||||
T Consensus 71 lFittKvw~~~~---------~~~~~~~a~e~Sl~rLg~dyvDLyLiHwP~~~~~~~~~etw~alE~l~~~G~ir~IGVS 141 (280)
T COG0656 71 LFITTKVWPSDL---------GYDETLKALEASLKRLGLDYVDLYLIHWPVPNKYVVIEETWKALEELVDEGLIRAIGVS 141 (280)
T ss_pred eEEEeecCCccC---------CcchHHHHHHHHHHHhCCCceeEEEECCCCCccCccHHHHHHHHHHHHhcCCccEEEee
Confidence 999999998643 56889999999999999999999999999752 3378999999999999999999999
Q ss_pred CCCHHHHHHHhcC--CCeeEEcccCCcccccccccccCCC
Q 040066 165 EASPDTIRRAHAV--HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 165 n~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
||+..+++++++. ..|.++|++||++.++.+ ++++|
T Consensus 142 NF~~~~L~~l~~~~~~~p~~NQIe~hp~~~q~e--l~~~~ 179 (280)
T COG0656 142 NFGVEHLEELLSLAKVKPAVNQIEYHPYLRQPE--LLPFC 179 (280)
T ss_pred CCCHHHHHHHHHhcCCCCceEEEEeccCCCcHH--HHHHH
Confidence 9999999998865 469999999999999775 88876
No 4
>PRK09912 L-glyceraldehyde 3-phosphate reductase; Provisional
Probab=100.00 E-value=5.5e-44 Score=302.63 Aligned_cols=192 Identities=29% Similarity=0.493 Sum_probs=161.7
Q ss_pred cCccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC-CChhHHHHHHHHhcC---
Q 040066 7 IEIPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGP-NNANELLVGKALKQL--- 82 (202)
Q Consensus 7 ~~~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~~--- 82 (202)
.+|++++||++|++||.||||||+. +|...+.+++.++|+.|++.|||+||||+.||. .|.+|+.+|++|++.
T Consensus 11 ~~m~~r~lg~tg~~vs~lglG~~~~---~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~YG~~~g~sE~~lG~~l~~~~~~ 87 (346)
T PRK09912 11 GQMQYRYCGKSGLRLPALSLGLWHN---FGHVNALESQRAILRKAFDLGITHFDLANNYGPPPGSAEENFGRLLREDFAA 87 (346)
T ss_pred CCcceeecCCCCcccccccccCccc---cCCCCCHHHHHHHHHHHHHCCCCEEEChhhhCCCCCCcHHHHHHHHHhcccC
Confidence 3699999999999999999999973 232346678899999999999999999999994 378999999999863
Q ss_pred CCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEE
Q 040066 83 PREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIG 162 (202)
Q Consensus 83 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iG 162 (202)
+|++++|+||++...... ......+++.+++++++||++||+||||+|++|+|++..+++++|++|++|+++|+|++||
T Consensus 88 ~Rd~~~I~TK~g~~~~~~-~~~~~~s~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~e~~~al~~l~~~GkIr~iG 166 (346)
T PRK09912 88 YRDELIISTKAGYDMWPG-PYGSGGSRKYLLASLDQSLKRMGLEYVDIFYSHRVDENTPMEETASALAHAVQSGKALYVG 166 (346)
T ss_pred CCCeEEEEEEecccCCCC-cCCCCCCHHHHHHHHHHHHHHHCCCcEEEEEeCCCCCCCCHHHHHHHHHHHHHcCCeeEEE
Confidence 599999999987421111 1112357999999999999999999999999999988888999999999999999999999
Q ss_pred ecCCCHHHHHHHhc-----CCCeeEEcccCCccccccc-ccccCCC
Q 040066 163 LSEASPDTIRRAHA-----VHPVTALQMEWSLWTREIE-DEIVPLC 202 (202)
Q Consensus 163 vsn~~~~~l~~~~~-----~~~~~~~q~~~n~~~~~~~-~~ll~~~ 202 (202)
||||++++++++.+ ..++.++|++||+++|..+ +.++++|
T Consensus 167 vSn~~~~~~~~~~~~~~~~~~~~~~~Q~~ynll~~~~~~~~ll~~~ 212 (346)
T PRK09912 167 ISSYSPERTQKMVELLREWKIPLLIHQPSYNLLNRWVDKSGLLDTL 212 (346)
T ss_pred ecCCCHHHHHHHHHHHHhcCCCcEEeeccCCceecccchhhHHHHH
Confidence 99999998876543 2477899999999999765 3577766
No 5
>TIGR01293 Kv_beta voltage-dependent potassium channel beta subunit, animal. Plant beta subunits and their closely related bacterial homologs (in Deinococcus radiudurans, Xylella fastidiosa, etc.) appear more closely related to each other than to animal forms. However, the bacterial species lack convincing counterparts the Kv alpha subunit and the Kv beta homolog may serve as an enzyme. Cutoffs are set for this model such that yeast and plant forms and bacterial close homologs score between trusted and noise cutoffs.
Probab=100.00 E-value=1.1e-43 Score=297.54 Aligned_cols=186 Identities=28% Similarity=0.417 Sum_probs=158.5
Q ss_pred ceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCCCEE
Q 040066 11 RVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPREKVQ 88 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~~~~ 88 (202)
+|+||++|++||.||||||+++ |...+++++.++++.|++.|||+||||+.||. |.||+.+|++|++ .+|++++
T Consensus 1 ~r~lg~tg~~vs~lglGt~~~~---g~~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~-g~sE~~lG~~l~~~~~~R~~~~ 76 (317)
T TIGR01293 1 YRNLGKSGLRVSCLGLGTWVTF---GGQISDEMAEQLLTLAYENGINLFDTAEVYAA-GKAEVVLGNILKKKGWRRSSYV 76 (317)
T ss_pred CcccCCCCCeecceeecCCccC---CCCCCHHHHHHHHHHHHHcCCCeEECccccCC-CccHHHHHHHHHhcCCCcccEE
Confidence 4789999999999999999742 33467889999999999999999999999997 7899999999985 3599999
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCH
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
|+||+++..... .....+++.+++++++||++||+||||+|++|||++..+++++|++|++|+++|+||+||||||+.
T Consensus 77 iaTK~~~~~~~~--~~~~~~~~~i~~~~~~SL~rL~td~iDl~~lH~~~~~~~~~e~~~aL~~l~~~G~ir~iGvSn~~~ 154 (317)
T TIGR01293 77 ITTKIFWGGKAE--TERGLSRKHIIEGLKASLERLQLEYVDIVFANRPDPNTPMEETVRAMTYVINQGMAMYWGTSRWSS 154 (317)
T ss_pred EEeeeccCCCCC--CCCCCCHHHHHHHHHHHHHHhCCCcEeEEEeccCCCCCCHHHHHHHHHHHHHcCCeeEEEecCCCH
Confidence 999986421110 112357899999999999999999999999999998888999999999999999999999999999
Q ss_pred HHHHHHhcC------CCeeEEcccCCcccccc-cccccCCC
Q 040066 169 DTIRRAHAV------HPVTALQMEWSLWTREI-EDEIVPLC 202 (202)
Q Consensus 169 ~~l~~~~~~------~~~~~~q~~~n~~~~~~-~~~ll~~~ 202 (202)
++++++... .+|+++|.+||+++|+. +..++++|
T Consensus 155 ~~l~~~~~~~~~~~~~~~~~~Q~~~~l~~r~~~e~~l~~~~ 195 (317)
T TIGR01293 155 MEIMEAYSVARQFNLIPPICEQAEYHMFQREKVEVQLPELY 195 (317)
T ss_pred HHHHHHHHHHHHcCCCCcceeccccChHhcchhHHHHHHHH
Confidence 998776432 47889999999999974 55566654
No 6
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=100.00 E-value=9.4e-43 Score=287.34 Aligned_cols=184 Identities=44% Similarity=0.670 Sum_probs=164.9
Q ss_pred ceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC-CCCEEE
Q 040066 11 RVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP-REKVQL 89 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~-r~~~~i 89 (202)
+++||++|+.||++|||||.++..+ .+.+++.++++.|++.|||+||||+.||. |.+|+.+|++|+..+ |++++|
T Consensus 1 ~r~lg~tg~~vs~lg~G~~~~~~~~---~~~~~~~~~l~~A~~~Gi~~iDTA~~Yg~-g~sE~~lG~al~~~~~R~~~~i 76 (285)
T cd06660 1 YRTLGKTGLKVSRLGLGTWQLGGGY---VDEEEAAAAVRAALDAGINFIDTADVYGD-GESEELLGEALKERGPREEVFI 76 (285)
T ss_pred CcccCCCCceecCcceeccccCCCC---CCHHHHHHHHHHHHHcCCCeEECccccCC-CCCHHHHHHHHhccCCcCcEEE
Confidence 4789999999999999999886543 47889999999999999999999999998 889999999999876 999999
Q ss_pred EeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCccEEEecCCCH
Q 040066 90 ATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP-IEDTMGELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 90 ~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+||+++.... ....+++.+++++++||++||++|||+|++|+|+.... ..++|++|++++++|+||+||||||+.
T Consensus 77 ~tK~~~~~~~----~~~~~~~~~~~~l~~sL~~L~~~~iDl~~lh~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvS~~~~ 152 (285)
T cd06660 77 ATKVGPRPGD----GRDLSPEHIRRAVEESLKRLGTDYIDLYLLHWPDPDTPDIEETLRALEELVKEGKIRAIGVSNFSA 152 (285)
T ss_pred EeeecCCCCC----CCCCCHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCCCHHHHHHHHHHHHHcCCccEEEeeCCCH
Confidence 9999865321 13457999999999999999999999999999987665 889999999999999999999999999
Q ss_pred HHHHHHhcC--CCeeEEcccCCcccccccccccCCC
Q 040066 169 DTIRRAHAV--HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 169 ~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
+.+.++... .+|+++|++||++++..+..++++|
T Consensus 153 ~~l~~~~~~~~~~~~~~q~~~n~~~~~~~~~~~~~~ 188 (285)
T cd06660 153 EQLEEALAAAGVPPAVNQVEYNLLDRQAEEELLPYC 188 (285)
T ss_pred HHHHHHHHhhCCCceEEecccCcccCchHHHHHHHH
Confidence 999999887 8999999999999998765676665
No 7
>PRK10625 tas putative aldo-keto reductase; Provisional
Probab=100.00 E-value=1.3e-42 Score=294.32 Aligned_cols=190 Identities=25% Similarity=0.370 Sum_probs=159.4
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC------CChhHHHHHHHHhcC
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGP------NNANELLVGKALKQL 82 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~------~g~~e~~lg~~l~~~ 82 (202)
|++++||++|++||.||||||+||. ..+++++.++++.|++.|||+||||+.||. .|.+|..+|++|++.
T Consensus 1 m~~r~lg~t~~~vs~iglGt~~~g~----~~~~~~a~~~l~~al~~Gi~~~DTA~~Yg~~~~~~~~g~sE~~iG~aL~~~ 76 (346)
T PRK10625 1 MQYHRIPHSSLEVSTLGLGTMTFGE----QNSEADAHAQLDYAVAQGINLIDVAEMYPVPPRPETQGLTETYIGNWLAKR 76 (346)
T ss_pred CCceecCCCCCccccEeEeccccCC----CCCHHHHHHHHHHHHHcCCCEEECccccCCCcCCCCCCchHHHHHHHHhhc
Confidence 6789999999999999999998753 356789999999999999999999999983 277999999999853
Q ss_pred -CCCCEEEEeccCcccCCCCC---cccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCC-----------------CCC
Q 040066 83 -PREKVQLATKFGIVKFDMSD---VVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-----------------TIP 141 (202)
Q Consensus 83 -~r~~~~i~tK~~~~~~~~~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----------------~~~ 141 (202)
+|++++|+||++......+. .....+++.+++++++||++||+||||+|++|||+. ..+
T Consensus 77 ~~R~~v~i~TK~~~~~~~~~~~~~~~~~~s~~~i~~~~e~SL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T PRK10625 77 GSREKLIIASKVSGPSRNNDKGIRPNQALDRKNIREALHDSLKRLQTDYLDLYQVHWPQRPTNCFGKLGYSWTDSAPAVS 156 (346)
T ss_pred CCcceEEEEcccccCCcCCCCCcCCCCCCCHHHHHHHHHHHHHHhCCCeEeEEEeeccCcccccccccccccccccCCCC
Confidence 48999999999642211000 012457899999999999999999999999999964 235
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhc------CCCeeEEcccCCcccccccccccCCC
Q 040066 142 IEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHA------VHPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 142 ~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~------~~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
++++|++|++|+++|+|++||||||+.++++++.. ...+.++|++||++++..+..++++|
T Consensus 157 ~~e~~~aL~~l~~~GkIr~iGvSn~~~~~l~~~~~~~~~~~~~~~~~~q~~y~l~~r~~~~~ll~~~ 223 (346)
T PRK10625 157 LLETLDALAEQQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSFEVGLAEVS 223 (346)
T ss_pred HHHHHHHHHHHHHCCCeEEEEecCCCHHHHHHHHHHHHHcCCCCcEEecCCCCcccccchhHHHHHH
Confidence 78999999999999999999999999998876543 23578899999999998776788776
No 8
>KOG1577 consensus Aldo/keto reductase family proteins [General function prediction only]
Probab=100.00 E-value=8.4e-43 Score=283.63 Aligned_cols=168 Identities=31% Similarity=0.493 Sum_probs=150.4
Q ss_pred ceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc------CCC
Q 040066 11 RVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ------LPR 84 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~------~~r 84 (202)
+++| ++|.+||.||||||+. ++.++.++++.|++.|+||||||..|+ +|+.+|++|++ ++|
T Consensus 6 ~~~L-n~G~~mP~iGlGTw~~--------~~~~~~~aV~~Al~~GYRHIDtA~~Y~----NE~evG~aik~~i~~~~v~R 72 (300)
T KOG1577|consen 6 TVKL-NNGFKMPIIGLGTWQS--------PPGQVAEAVKAAIKAGYRHIDTAHVYG----NEKEVGEAIKELLAEGGVKR 72 (300)
T ss_pred eEec-cCCCccceeeeEeccc--------ChhhHHHHHHHHHHhCcceeechhhhC----ChHHHHHHHHHHhhhCCcch
Confidence 6788 8999999999999972 568899999999999999999999999 79999999984 579
Q ss_pred CCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC----------------CCHHHHHHH
Q 040066 85 EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT----------------IPIEDTMGE 148 (202)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~----------------~~~~~~~~~ 148 (202)
+++||+||+|+... .++.++.++++||++||+||+|+|++|||-.. .+..++|++
T Consensus 73 ediFiTSKlw~~~~---------~~~~v~~al~~sLk~L~ldYvDLyLiH~P~~~k~~~~~~~~~~~~~~~~~~~~tW~a 143 (300)
T KOG1577|consen 73 EDIFITSKLWPTDH---------APELVEKALEKSLKKLQLDYVDLYLIHWPVAFKDSFPKDENGKVNYDDVDRIETWKA 143 (300)
T ss_pred hhheeeeccCcccc---------ChhhHHHHHHHHHHHhChhhhheeeEecccccCCCCCcccccccccccchHHHHHHH
Confidence 99999999998643 57889999999999999999999999999442 236689999
Q ss_pred HHHHHHcCCccEEEecCCCHHHHHHHhcC--CCeeEEcccCCcccccccccccCCC
Q 040066 149 LKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 149 l~~l~~~G~vr~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
|+++++.|++|+||||||+..+|+++++. .+|.++|++||++-++. +|+++|
T Consensus 144 mE~~~~~Gl~rsIGVSNF~~~~le~ll~~~ki~P~vnQvE~HP~~~Q~--~L~~fC 197 (300)
T KOG1577|consen 144 MEKLVDEGLVRSIGVSNFNIKQLEELLNLAKIKPAVNQVECHPYLQQK--KLVEFC 197 (300)
T ss_pred HHHHHHcCCceEeeeecCCHHHHHHHHhcCCCCCccceeeccCCcChH--HHHHHH
Confidence 99999999999999999999999999876 68999999999987743 577776
No 9
>PRK10376 putative oxidoreductase; Provisional
Probab=100.00 E-value=1.4e-41 Score=281.66 Aligned_cols=187 Identities=25% Similarity=0.470 Sum_probs=157.6
Q ss_pred ceecCCCCccccceeeecccCCC--CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEE
Q 040066 11 RVKLGGQGFEVSKLGFGCMGLTG--IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQ 88 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~--~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~ 88 (202)
+++|+ |++||+||||||++|+ .||...+++++.++++.|++.|||+||||+.||. +.+|+.+|++++. .|++++
T Consensus 9 ~~~l~--g~~vs~iglG~~~lg~~~~~g~~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-~~sE~~lg~~l~~-~R~~~~ 84 (290)
T PRK10376 9 TFTLG--GRSVNRLGYGAMQLAGPGVFGPPKDRDAAIAVLREAVALGVNHIDTSDFYGP-HVTNQLIREALHP-YPDDLT 84 (290)
T ss_pred ceecC--CeeecccceeccccCCCCcCCCCCCHHHHHHHHHHHHHcCCCeEEChhhcCC-CcHHHHHHHHHhc-CCCeEE
Confidence 34564 9999999999999975 3565567889999999999999999999999998 7899999999975 489999
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCC-----CCCHHHHHHHHHHHHHcCCccEEEe
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDT-----TIPIEDTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-----~~~~~~~~~~l~~l~~~G~vr~iGv 163 (202)
|+||+++............+++.+++++++||++||+||||+|++|+++. ..++.++|++|++|+++||||+|||
T Consensus 85 i~TK~g~~~~~~~~~~~~~~~~~i~~~~e~SL~rL~td~iDl~~~H~~~~~h~p~~~~~~~~~~~l~~l~~~Gkir~iGv 164 (290)
T PRK10376 85 IVTKVGARRGEDGSWLPAFSPAELRRAVHDNLRNLGLDVLDVVNLRLMGDGHGPAEGSIEEPLTVLAELQRQGLVRHIGL 164 (290)
T ss_pred EEeeecccCCCCCccCCCCCHHHHHHHHHHHHHHhCCCeEEEEEEeccCCCCCCCCCCHHHHHHHHHHHHHCCceeEEEe
Confidence 99998754322111223457899999999999999999999999988521 2347899999999999999999999
Q ss_pred cCCCHHHHHHHhcCCCeeEEcccCCcccccccccccCCC
Q 040066 164 SEASPDTIRRAHAVHPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 164 sn~~~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
|||++++++++....+++++|++||++++.. .+++++|
T Consensus 165 Sn~~~~~l~~~~~~~~~~~~q~~~~~~~~~~-~~~~~~~ 202 (290)
T PRK10376 165 SNVTPTQVAEARKIAEIVCVQNHYNLAHRAD-DALIDAL 202 (290)
T ss_pred cCCCHHHHHHHHhhCCeEEEecccCCCcCCh-HHHHHHH
Confidence 9999999999988889999999999999863 3466654
No 10
>PLN02587 L-galactose dehydrogenase
Probab=100.00 E-value=1.3e-41 Score=284.71 Aligned_cols=184 Identities=32% Similarity=0.527 Sum_probs=154.8
Q ss_pred ceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCCCEE
Q 040066 11 RVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPREKVQ 88 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~~~~ 88 (202)
||+||++|++||.||||||++|+.|+ ..+++++.+++++|++.|||+||||+.||. |.+|..+|++|++ .+|++++
T Consensus 1 ~r~lg~t~~~vs~lglG~~~~g~~~~-~~~~~~~~~~l~~A~~~Gin~~DTA~~Yg~-g~sE~~lG~al~~~~~~R~~v~ 78 (314)
T PLN02587 1 LRELGSTGLKVSSVGFGASPLGSVFG-PVSEEDAIASVREAFRLGINFFDTSPYYGG-TLSEKVLGKALKALGIPREKYV 78 (314)
T ss_pred CCcCCCCCCcccCcccccccccCCCC-CCCHHHHHHHHHHHHHcCCCEEECcCccCC-CchHHHHHHHHHhCCCCcceEE
Confidence 57899999999999999999986554 467889999999999999999999999998 8899999999987 3599999
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC---CCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT---IPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
|+||+++.... ...+++.+++++++||++||+||||+|++|+|+.. ..++++|++|++|+++|+||+||+||
T Consensus 79 I~TK~~~~~~~-----~~~~~~~i~~~~e~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn 153 (314)
T PLN02587 79 VSTKCGRYGEG-----FDFSAERVTKSVDESLARLQLDYVDILHCHDIEFGSLDQIVNETIPALQKLKESGKVRFIGITG 153 (314)
T ss_pred EEeccccCCCC-----CCCCHHHHHHHHHHHHHHhCCCCeeEEEecCCCCcchhhhHHHHHHHHHHHHHCCCeEEEEecC
Confidence 99999743211 23478999999999999999999999999999642 34578999999999999999999999
Q ss_pred CCHHHHHHHhcC-----CCeeEEcccCCcccccccccccCCC
Q 040066 166 ASPDTIRRAHAV-----HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 166 ~~~~~l~~~~~~-----~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
|++++++.+... ..+..+|+.||++++..+ +++++|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~ll~~~ 194 (314)
T PLN02587 154 LPLAIFTYVLDRVPPGTVDVILSYCHYSLNDSSLE-DLLPYL 194 (314)
T ss_pred CCHHHHHHHHHhhhcCCCCeEEeccccCcchhhHH-HHHHHH
Confidence 999888766543 234446899999887543 576665
No 11
>PF00248 Aldo_ket_red: Aldo/keto reductase family; InterPro: IPR023210 The aldo-keto reductase family includes a number of related monomeric NADPH-dependent oxidoreductases, such as aldehyde reductase, aldose reductase, prostaglandin F synthase, xylose reductase, rho crystallin, and many others []. All possess a similar structure, with a beta-alpha-beta fold characteristic of nucleotide binding proteins []. The fold comprises a parallel beta-8/alpha-8-barrel, which contains a novel NADP-binding motif. The binding site is located in a large, deep, elliptical pocket in the C-terminal end of the beta sheet, the substrate being bound in an extended conformation. The hydrophobic nature of the pocket favours aromatic and apolar substrates over highly polar ones []. Binding of the NADPH coenzyme causes a massive conformational change, reorienting a loop, effectively locking the coenzyme in place. This binding is more similar to FAD- than to NAD(P)-binding oxidoreductases []. Some proteins of this entry contain a K+ ion channel beta chain regulatory domain; these are reported to have oxidoreductase activity []. This entry represents the NADP-dependent oxidoreductase domain found in these proteins.; PDB: 1C9W_A 4F40_B 1VBJ_A 1XGD_A 1X97_A 2ACS_A 1EF3_A 2ACU_A 1PWM_A 2NVD_A ....
Probab=100.00 E-value=2.9e-40 Score=272.24 Aligned_cols=172 Identities=34% Similarity=0.581 Sum_probs=147.4
Q ss_pred ceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCCCEEEEeccCcccCCC
Q 040066 23 KLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPREKVQLATKFGIVKFDM 100 (202)
Q Consensus 23 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~~~~i~tK~~~~~~~~ 100 (202)
+||||||++++. ..+++++.++|+.|++.|||+||||+.||. |.+|+.+|++|++ .+|++++|+||+...
T Consensus 1 ~l~lG~~~~~~~---~~~~~~~~~~l~~a~~~Gin~~DtA~~Y~~-g~sE~~lg~~l~~~~~~r~~~~i~tK~~~~---- 72 (283)
T PF00248_consen 1 PLGLGTWRLGGE---RVSEEEAEAILRRALEAGINFFDTADSYGN-GRSERILGRALRKSRVPRDDIFISTKVYGD---- 72 (283)
T ss_dssp SBEEECTTBTTT---TSTHHHHHHHHHHHHHTT--EEEECGGGGG-GTHHHHHHHHHHHTSSTGGGSEEEEEEESS----
T ss_pred CEEEEccccCCC---CCCHHHHHHHHHHHHHcCCCeecccccccc-cccccccccccccccccccccccccccccc----
Confidence 589999998653 678999999999999999999999999977 7799999999998 679999999999211
Q ss_pred CCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC-HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH--hcC
Q 040066 101 SDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP-IEDTMGELKKLVEEGKIKYIGLSEASPDTIRRA--HAV 177 (202)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~--~~~ 177 (202)
.......+++.+++++++||++||+||||+|++|+|+...+ ..++|++|++|+++|+||+||||||++++++.+ ...
T Consensus 73 ~~~~~~~~~~~i~~~~~~sL~~L~~d~iDl~~lH~~~~~~~~~~~~~~~l~~l~~~G~ir~iGvs~~~~~~l~~~~~~~~ 152 (283)
T PF00248_consen 73 GKPEPDYSPDSIRESLERSLERLGTDYIDLLLLHWPDPSEDALEEVWEALEELKKEGKIRHIGVSNFSPEQLEAALKIGS 152 (283)
T ss_dssp SSTGGGSSHHHHHHHHHHHHHHHTSSSEEEEEESSSSTTSSHHHHHHHHHHHHHHTTSEEEEEEES--HHHHHHHHTCTS
T ss_pred ccccccccccccccccccccccccccchhccccccccccccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 12234568999999999999999999999999999999888 899999999999999999999999999999999 666
Q ss_pred CCeeEEcccCCcccccccccccCCC
Q 040066 178 HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 178 ~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
.+|+++|++||++++.....++++|
T Consensus 153 ~~~~~~q~~~n~~~~~~~~~l~~~~ 177 (283)
T PF00248_consen 153 IPPDVVQINYNLLNRREEEGLLEFC 177 (283)
T ss_dssp S-ESEEEEE-BTTBHBGGHHHHHHH
T ss_pred ccccccccccccccccccccccccc
Confidence 8999999999999777776777654
No 12
>PRK14863 bifunctional regulator KidO; Provisional
Probab=100.00 E-value=3.6e-40 Score=273.32 Aligned_cols=171 Identities=23% Similarity=0.271 Sum_probs=146.4
Q ss_pred CccccceeeecccCCCCC------CCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEe
Q 040066 18 GFEVSKLGFGCMGLTGIY------NDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLAT 91 (202)
Q Consensus 18 g~~vs~lg~Gt~~~~~~~------~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~t 91 (202)
+.+||+||||||+||+.+ .+..+++++.++++.|++.|||+||||+.||. ||..+|++|+...+++++|+|
T Consensus 2 ~~~vs~iglGt~~~g~~~~~~~~~~~~~~~~ea~~~l~~A~~~Gin~~DTA~~YG~---SE~~lG~al~~~~~~~~~i~t 78 (292)
T PRK14863 2 SSPVSKLGLAAAQFGLDPGSSSAPRGRTPEAEARDILNIAARAGLSVLDASGLFGR---AETVLGQLIPRPVPFRVTLST 78 (292)
T ss_pred CCcceeeeeeeeccCCCcccccCCCCCCCHHHHHHHHHHHHHcCCCEEecchhhhh---HHHHHhhhhccCCceEeeccc
Confidence 578999999999998531 13578999999999999999999999999996 999999999853345788888
Q ss_pred ccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCH-HHHHHHHHHHHHcCCccEEEecCCCHH
Q 040066 92 KFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPI-EDTMGELKKLVEEGKIKYIGLSEASPD 169 (202)
Q Consensus 92 K~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~-~~~~~~l~~l~~~G~vr~iGvsn~~~~ 169 (202)
|.. ..+++.+++++++||++||+||||+|++|+|++. .+. +++|++|++|+++||||+||||||+++
T Consensus 79 k~~-----------~~~~~~i~~~~e~SL~rLg~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~ 147 (292)
T PRK14863 79 VRA-----------DRGPDFVEAEARASLRRMGVERADAILVHSPTELFGPHGAALWERLQALKDQGLFAKIGVSAHASD 147 (292)
T ss_pred ccc-----------cccHHHHHHHHHHHHHHhCCCccCeEEEeCchhhcCcchHHHHHHHHHHHHcCCcceEeeeccCHH
Confidence 842 1257899999999999999999999999999763 233 578999999999999999999999999
Q ss_pred HHHHHhcCCCeeEEcccCCccccccc-ccccCCC
Q 040066 170 TIRRAHAVHPVTALQMEWSLWTREIE-DEIVPLC 202 (202)
Q Consensus 170 ~l~~~~~~~~~~~~q~~~n~~~~~~~-~~ll~~~ 202 (202)
++..+....+|+++|++||+++|+.+ .+++++|
T Consensus 148 ~~~~~~~~~~~~~~Q~~~n~l~~~~~~~~~l~~~ 181 (292)
T PRK14863 148 DPVGVARRFKPDILQAPASLLDQRLLADGSLQRI 181 (292)
T ss_pred HHHHHHhcCCCCEEEecCCcccccccccchHHHH
Confidence 99888878899999999999999764 3466654
No 13
>PRK11565 dkgA 2,5-diketo-D-gluconate reductase A; Provisional
Probab=100.00 E-value=3.7e-39 Score=265.31 Aligned_cols=171 Identities=30% Similarity=0.371 Sum_probs=148.2
Q ss_pred CCcccccCccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh
Q 040066 1 MAEEQRIEIPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK 80 (202)
Q Consensus 1 ~~~~~~~~~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (202)
||+++ +..| ++|+.||.||||||++ +++++.+++++|++.|+|+||||+.|| +|+.+|++|+
T Consensus 1 ~~~~~-----~~~l-~~g~~v~~lglG~~~~--------~~~~~~~~l~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~ 62 (275)
T PRK11565 1 MANPT-----VIKL-QDGNVMPQLGLGVWQA--------SNEEVITAIHKALEVGYRSIDTAAIYK----NEEGVGKALK 62 (275)
T ss_pred CCCCc-----eEEc-CCCCccCCcceECccC--------CHHHHHHHHHHHHHhCCCEEEchhhhC----CHHHHHHHHH
Confidence 78877 4567 7899999999999975 357899999999999999999999999 6999999998
Q ss_pred cC--CCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCC
Q 040066 81 QL--PREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTI-PIEDTMGELKKLVEEGK 157 (202)
Q Consensus 81 ~~--~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~ 157 (202)
.. +|++++|+||++.. +++.+++++++||++||+||||+|++|+|++.. ++.++|++|++|+++|+
T Consensus 63 ~~~~~R~~~~i~tK~~~~-----------~~~~~~~~~~~sL~rL~~d~iDl~~lH~p~~~~~~~~~~~~~l~~l~~~G~ 131 (275)
T PRK11565 63 EASVAREELFITTKLWND-----------DHKRPREALEESLKKLQLDYVDLYLMHWPVPAIDHYVEAWKGMIELQKEGL 131 (275)
T ss_pred HcCCCHHHEEEEEEecCc-----------chHHHHHHHHHHHHHhCCCceEEEEecCCCCCcCcHHHHHHHHHHHHHcCC
Confidence 63 58999999998631 467899999999999999999999999998653 47899999999999999
Q ss_pred ccEEEecCCCHHHHHHHhcC--CCeeEEcccCCcccccccccccCCC
Q 040066 158 IKYIGLSEASPDTIRRAHAV--HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 158 vr~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
||+||||||+++++++++.. .+|.++|++||++.+. .+++++|
T Consensus 132 ir~iGvSn~~~~~l~~~~~~~~v~~~~~Q~~~~~~~~~--~~~~~~~ 176 (275)
T PRK11565 132 IKSIGVCNFQIHHLQRLIDETGVTPVINQIELHPLMQQ--RQLHAWN 176 (275)
T ss_pred eeEEeeccCCHHHHHHHHHhCCCCceeeeeecCCccch--HHHHHHH
Confidence 99999999999999988754 3688999999998874 2455443
No 14
>PRK11172 dkgB 2,5-diketo-D-gluconate reductase B; Provisional
Probab=100.00 E-value=5.2e-39 Score=263.40 Aligned_cols=160 Identities=26% Similarity=0.439 Sum_probs=140.1
Q ss_pred cccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc--CCCCCEEEEeccCccc
Q 040066 20 EVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ--LPREKVQLATKFGIVK 97 (202)
Q Consensus 20 ~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~--~~r~~~~i~tK~~~~~ 97 (202)
+||.||||||+++ .+++.++++.|++.|||+||||+.|| +|..+|++|++ .+|++++|+||+++.
T Consensus 2 ~vs~lglGt~~~~--------~~~~~~~i~~A~~~Gi~~~DTA~~Yg----~E~~lG~al~~~~~~R~~v~i~TK~~~~- 68 (267)
T PRK11172 2 SIPAFGLGTFRLK--------DQVVIDSVKTALELGYRAIDTAQIYD----NEAAVGQAIAESGVPRDELFITTKIWID- 68 (267)
T ss_pred CCCCEeeEccccC--------hHHHHHHHHHHHHcCCCEEEccchhC----CHHHHHHHHHHcCCChhHeEEEEEeCCC-
Confidence 5899999999763 36789999999999999999999999 69999999985 469999999998632
Q ss_pred CCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC--CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHh
Q 040066 98 FDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT--IPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAH 175 (202)
Q Consensus 98 ~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 175 (202)
..+++.+++++++||++||+||||+|++|+|++. .+..++|++|++++++|+||+||||||+.+++++++
T Consensus 69 --------~~~~~~~~~~~~~SL~rL~~d~iDl~~lH~~~~~~~~~~~~~~~~l~~l~~~Gkir~iGvSn~~~~~l~~~~ 140 (267)
T PRK11172 69 --------NLAKDKLIPSLKESLQKLRTDYVDLTLIHWPSPNDEVSVEEFMQALLEAKKQGLTREIGISNFTIALMKQAI 140 (267)
T ss_pred --------CCCHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEccCCHHHHHHHH
Confidence 2368899999999999999999999999999763 467899999999999999999999999999998876
Q ss_pred cC---CCeeEEcccCCcccccccccccCCC
Q 040066 176 AV---HPVTALQMEWSLWTREIEDEIVPLC 202 (202)
Q Consensus 176 ~~---~~~~~~q~~~n~~~~~~~~~ll~~~ 202 (202)
+. .+|+++|++||+++++ .+++++|
T Consensus 141 ~~~~~~~~~~~Q~~~~~~~~~--~~ll~~~ 168 (267)
T PRK11172 141 AAVGAENIATNQIELSPYLQN--RKVVAFA 168 (267)
T ss_pred HhcCCCCCeEEeeecCCCCCc--HHHHHHH
Confidence 54 3689999999999974 4677665
No 15
>COG4989 Predicted oxidoreductase [General function prediction only]
Probab=100.00 E-value=1.1e-38 Score=250.81 Aligned_cols=190 Identities=29% Similarity=0.453 Sum_probs=166.5
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC--CCC
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP--REK 86 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~--r~~ 86 (202)
|++.+++..|+++|++.+|+|++.. | .....++...++.|++.||++||-|+.||. +++|.++|.+|+-.| |++
T Consensus 1 m~rI~l~~~~~e~Sriv~G~wRl~d-~--~~~~~e~~~~Ie~~le~Gitt~DhADIYGg-y~cE~~fg~aL~l~p~lRek 76 (298)
T COG4989 1 MQRITLAPDGLEFSRIVLGYWRLND-W--NMSARELLSFIETALELGITTFDHADIYGG-YQCEALFGEALKLAPGLREK 76 (298)
T ss_pred CceEEecCCCccHHHHHHHHHhhhh-c--cCCHHHHHHHHHHHHHcCcccchhhhhcCC-ccHHHHHHHHHhcChhhhhh
Confidence 6788999999999999999999964 3 356678899999999999999999999998 999999999998644 999
Q ss_pred EEEEeccCcccCCCCC---cccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 040066 87 VQLATKFGIVKFDMSD---VVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 87 ~~i~tK~~~~~~~~~~---~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGv 163 (202)
+.|+||.+........ .-.+.+.++|..+++.||.+|++||+|++++|+||+.++.+++.+++..|.++||||++||
T Consensus 77 ieivsKCGI~~~s~~~~~~~hydts~~HI~~SVe~SL~~L~tDylD~LLiHRPDpLmd~eeVAeAf~~L~~sGKVr~fGV 156 (298)
T COG4989 77 IEIVSKCGIRLPSREEPRIGHYDTSKEHIIKSVEQSLINLKTDYLDLLLIHRPDPLMDAEEVAEAFTHLHKSGKVRHFGV 156 (298)
T ss_pred eEeeeccccccccccccccccccCcHHHHHHHHHHHHHHhccchhhhhhccCCcccCCHHHHHHHHHHHHhcCCeeeeec
Confidence 9999999975542211 1246789999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHhcCC--CeeEEcccCCccccc-ccccccCCC
Q 040066 164 SEASPDTIRRAHAVH--PVTALQMEWSLWTRE-IEDEIVPLC 202 (202)
Q Consensus 164 sn~~~~~l~~~~~~~--~~~~~q~~~n~~~~~-~~~~ll~~~ 202 (202)
|||++.|++.+.... ++.+||++.|+++.. ..+..+++|
T Consensus 157 SNf~p~Q~~LL~s~l~~~LvtNQlelS~~~~~~~~DGtLd~~ 198 (298)
T COG4989 157 SNFNPAQFELLQSRLPFTLVTNQLELSPLHTPMLLDGTLDYC 198 (298)
T ss_pred CCCCHHHHHHHHHhccchhhhcceeeccccccccccchHHHH
Confidence 999999999887763 578999999999986 444466655
No 16
>KOG1576 consensus Predicted oxidoreductase [Energy production and conversion]
Probab=100.00 E-value=1.7e-35 Score=234.67 Aligned_cols=181 Identities=31% Similarity=0.524 Sum_probs=156.0
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEE
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQ 88 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~ 88 (202)
|.+|.+|++|+.||++|||...+++.++. .++++...-+..|+.+|||+|||++.||+ +++|..+|.++++.||+..+
T Consensus 22 meyR~lg~tgl~VSk~~fGga~L~~~fgd-~~~e~~i~tv~eA~k~GINyiDTsp~Ygq-s~se~~lg~al~~vPR~aYy 99 (342)
T KOG1576|consen 22 MEYRQLGSTGLRVSKLGFGGAALGQLFGD-EDEEEGILTVIEAFKSGINYIDTSPYYGQ-SRSEEGLGLALKDVPREAYY 99 (342)
T ss_pred HHHhhcCCCcceeeeeeecchhhhhhcCC-cchhhhHHHHHHHHHccccceecCcccCc-chhHHHHHHHHhhCChhhee
Confidence 88999999999999999999999887775 56677666666699999999999999999 99999999999999999999
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC----HHHHHHHHHHHHHcCCccEEEec
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP----IEDTMGELKKLVEEGKIKYIGLS 164 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~~~~~~~l~~l~~~G~vr~iGvs 164 (202)
|+||++..... .....+++++.+++++++||++|++||+|++++|..+.... +.+++.+|++++++||+|+|||+
T Consensus 100 IaTKvgRy~ld-~~~~FdfsadkvreSv~rSlerLqldyvDilqiHDvefap~ld~vl~Etlp~Le~lk~~Gk~RfiGit 178 (342)
T KOG1576|consen 100 IATKVGRYELD-YANMFDFSADKVRESVKRSLERLQLDYVDILQIHDVEFAPNLDIVLNETLPALEELKQEGKIRFIGIT 178 (342)
T ss_pred eeeeeeecccC-ccccccchHHHHHHHHHHHHHHhCCceeEEEEeecccccccccHHHHHHHHHHHHHHhcCceeEeeec
Confidence 99999864332 22335778999999999999999999999999999876522 56999999999999999999999
Q ss_pred CCCHHHHHHHhcCC--CeeEEc--ccCCcccc
Q 040066 165 EASPDTIRRAHAVH--PVTALQ--MEWSLWTR 192 (202)
Q Consensus 165 n~~~~~l~~~~~~~--~~~~~q--~~~n~~~~ 192 (202)
.+..+.+...++.. ..+++- .+|++.|.
T Consensus 179 gypldvl~~~ae~~~G~~dvvlsY~ry~l~d~ 210 (342)
T KOG1576|consen 179 GYPLDVLTECAERGKGRLDVVLSYCRYTLNDN 210 (342)
T ss_pred ccchHHHHHHHhcCCCceeeehhhhhhccccH
Confidence 99999999988764 466665 66666553
No 17
>COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only]
Probab=100.00 E-value=1.6e-35 Score=244.22 Aligned_cols=177 Identities=31% Similarity=0.402 Sum_probs=157.9
Q ss_pred ccceecCCCCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEE
Q 040066 9 IPRVKLGGQGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQ 88 (202)
Q Consensus 9 ~~~~~lg~~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~ 88 (202)
|.||++|++|.++|.+|||+|++.-.+++..|.+.+.+++++|++.|||+||||..|.. |.||..+|++|++..|++++
T Consensus 1 Mlyr~~~k~g~~~s~lgfG~MRlp~~~~~~id~~~~~~~i~~aie~GiNyidTA~~Yh~-g~sE~~lgkaL~~~~Rekv~ 79 (391)
T COG1453 1 MLYRKFPKTGDELSILGFGCMRLPLKEQGSIDEENANETIDYAIEHGINYIDTAWPYHG-GESEEFLGKALKDGYREKVK 79 (391)
T ss_pred CchhhcCCCCcccceeccceeecccccCCCccHHHHHHHHHHHHHcCCceEeecccccC-CCchHHHHHHhhhcccceEE
Confidence 67999999999999999999998766667789999999999999999999999999955 66999999999998899999
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHH-----HHHHHHHHHHHcCCccEEEe
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIE-----DTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~-----~~~~~l~~l~~~G~vr~iGv 163 (202)
++||+..+... +++.+++-++++|++||+||+|+|++|.... ..++ ..++.+++++++|+||++|+
T Consensus 80 LaTKlp~~~~~--------~~edm~r~fneqLekl~~Dy~D~yliH~l~~-e~~~k~~~~g~~df~~kak~eGkIr~~GF 150 (391)
T COG1453 80 LATKLPSWPVK--------DREDMERIFNEQLEKLGTDYIDYYLIHGLNT-ETWEKIERLGVFDFLEKAKAEGKIRNAGF 150 (391)
T ss_pred EEeecCCcccc--------CHHHHHHHHHHHHHHhCCchhhhhhhccccH-HHHHHHHccChHHHHHHHHhcCcEEEeee
Confidence 99999854332 6889999999999999999999999999976 3332 46999999999999999999
Q ss_pred cCCCH-HHHHHHhcCCCeeEEcccCCccccccc
Q 040066 164 SEASP-DTIRRAHAVHPVTALQMEWSLWTREIE 195 (202)
Q Consensus 164 sn~~~-~~l~~~~~~~~~~~~q~~~n~~~~~~~ 195 (202)
|.|+. +.+.+++...+++++|++||.+|....
T Consensus 151 SfHgs~e~~~~iv~a~~~dfvqlq~ny~d~~n~ 183 (391)
T COG1453 151 SFHGSTEVFKEIVDAYPWDFVQLQYNYIDQKNQ 183 (391)
T ss_pred cCCCCHHHHHHHHhcCCcceEEeeeeeeccchh
Confidence 99874 568889999999999999999997643
No 18
>KOG3023 consensus Glutamate-cysteine ligase regulatory subunit [Amino acid transport and metabolism]
Probab=97.16 E-value=0.00054 Score=54.69 Aligned_cols=47 Identities=23% Similarity=0.308 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC--CCeeEEcccCC
Q 040066 142 IEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV--HPVTALQMEWS 188 (202)
Q Consensus 142 ~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~--~~~~~~q~~~n 188 (202)
+.+.|..||+++.+|+|..||||.|+..+|+++++. .+|..+|++..
T Consensus 155 lkplwk~LE~lv~~~kI~~lGvSDfda~qLe~Li~saqVvP~snqVnL~ 203 (285)
T KOG3023|consen 155 LKPLWKLLEELVGEGKIGTLGVSDFDANQLERLISSAQVVPESNQVNLG 203 (285)
T ss_pred HHHHHHHHHHHhccCceeeeeecccCHHHHHHHHhhhccccccceeecc
Confidence 347899999999999999999999999999999876 57788887654
No 19
>COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism]
Probab=90.11 E-value=3.6 Score=36.13 Aligned_cols=109 Identities=18% Similarity=0.198 Sum_probs=65.1
Q ss_pred ccceeeecccCCCC----CCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcc
Q 040066 21 VSKLGFGCMGLTGI----YNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIV 96 (202)
Q Consensus 21 vs~lg~Gt~~~~~~----~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~ 96 (202)
|.++++|-..|... .++.-+.+++.++++.+.+.|+.-|-.-=.||-|+.
T Consensus 148 vNRiSlGVQsf~~~~lk~lgR~h~~~~~~~a~~~~~~~g~~~in~DLIyglP~Q-------------------------- 201 (416)
T COG0635 148 VNRISLGVQSFNDEVLKALGRIHDEEEAKEAVELARKAGFTSINIDLIYGLPGQ-------------------------- 201 (416)
T ss_pred CCEEEeccccCCHHHHHHhcCCCCHHHHHHHHHHHHHcCCCcEEEEeecCCCCC--------------------------
Confidence 33888887776531 234445677777777777777777665556664222
Q ss_pred cCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEee-cCCC-----------CCCH---HHHHHHHH-HHHHcCCccE
Q 040066 97 KFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQH-RVDT-----------TIPI---EDTMGELK-KLVEEGKIKY 160 (202)
Q Consensus 97 ~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh-~~~~-----------~~~~---~~~~~~l~-~l~~~G~vr~ 160 (202)
+.+.+.+.++..++ |+.|+|.+|.+- -|.. ..+. .+.++..+ .|.+.|. +.
T Consensus 202 -----------T~~~~~~~l~~a~~-l~pdhis~y~L~~~p~t~~~~~~~~~~~lP~~d~~~~~~~~~~e~L~~~Gy-~~ 268 (416)
T COG0635 202 -----------TLESLKEDLEQALE-LGPDHLSLYSLAIEPGTKFAQRKIKGKALPDEDEKADMYELVEELLEKAGY-RQ 268 (416)
T ss_pred -----------CHHHHHHHHHHHHh-CCCCEEEEeeeecCCCchhhhhcccCCCCcChHHHHHHHHHHHHHHHHCCC-cE
Confidence 45555555555553 457888888773 3211 1111 24444444 4455566 89
Q ss_pred EEecCCCH
Q 040066 161 IGLSEASP 168 (202)
Q Consensus 161 iGvsn~~~ 168 (202)
+|+|||.-
T Consensus 269 yeisnfa~ 276 (416)
T COG0635 269 YEISNFAK 276 (416)
T ss_pred EeechhcC
Confidence 99999986
No 20
>PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=89.23 E-value=1.4 Score=34.81 Aligned_cols=69 Identities=13% Similarity=0.176 Sum_probs=46.9
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHhcCCCeeEEcccCCc
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
....+|.|++-+++........+.+.+ +.+.+.. .+.++.+||. |-+++.+.++.+...++++|++-+.
T Consensus 16 ~~~~~GaD~iGfIf~~~SpR~V~~~~a-~~i~~~~-~~~~~~VgVf~~~~~~~i~~~~~~~~~d~vQLHG~e 85 (207)
T PRK13958 16 AASQLPIDAIGFIHYEKSKRHQTITQI-KKLASAV-PNHIDKVCVVVNPDLTTIEHILSNTSINTIQLHGTE 85 (207)
T ss_pred HHHHcCCCEEEEecCCCCcccCCHHHH-HHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhCCCCEEEECCCC
Confidence 456799999999754432222333333 3333322 2568889996 6888999999999999999988653
No 21
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=86.78 E-value=6.7 Score=34.13 Aligned_cols=39 Identities=13% Similarity=0.006 Sum_probs=17.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHH
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLV 75 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~l 75 (202)
...+.+++.++++.+-+.|+..+-.--.||-||++++-+
T Consensus 146 R~~~~~~~~~ai~~l~~~G~~~v~~dlI~GlPgqt~e~~ 184 (400)
T PRK07379 146 RSHRVKDIFAAVDLIHQAGIENFSLDLISGLPHQTLEDW 184 (400)
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHH
Confidence 334445555555555555555332223444434444433
No 22
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=85.30 E-value=2.7 Score=33.23 Aligned_cols=68 Identities=18% Similarity=0.240 Sum_probs=44.9
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCeeEEcccCC
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQMEWS 188 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n 188 (202)
.+..+|.|++-+++........+. +..+.+.... .+.++.+||.. -+++.+.++.+...++++|++-+
T Consensus 18 ~~~~~Gad~iGfI~~~~S~R~V~~-~~a~~i~~~~-~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~ 86 (210)
T PRK01222 18 AAAELGADAIGFVFYPKSPRYVSP-EQAAELAAAL-PPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGD 86 (210)
T ss_pred HHHHcCCCEEEEccCCCCCCcCCH-HHHHHHHHhC-CCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 345689999999743322222222 3333333222 35688999984 67889999999999999999764
No 23
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=85.02 E-value=9.6 Score=32.76 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEee
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQH 134 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh 134 (202)
+.+.+.+.++..++ ++.++|.+|.+.
T Consensus 168 t~~~~~~~l~~~~~-l~~~~is~y~l~ 193 (370)
T PRK06294 168 SLSDFIVDLHQAIT-LPITHISLYNLT 193 (370)
T ss_pred CHHHHHHHHHHHHc-cCCCeEEEeeeE
Confidence 45556665555543 566666666664
No 24
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=83.68 E-value=26 Score=29.84 Aligned_cols=59 Identities=15% Similarity=0.112 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeec-CCCC--------CCHHHHHH-HHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHR-VDTT--------IPIEDTMG-ELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~--------~~~~~~~~-~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+++.++..+ +++.+++.+|.+.- |... .+-++.++ +.+.|.+.|. ..+++|||.-
T Consensus 163 t~~~~~~~l~~~~-~l~~~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~l~~~Gy-~~yeis~fa~ 231 (350)
T PRK08446 163 NKKLLKEELKLAK-ELPINHLSAYSLTIEENTPFFEKNHKKKDDENLAKFFIEQLEELGF-KQYEISNFGK 231 (350)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeccceecCCChhHHhhhcCCCHHHHHHHHHHHHHHCCC-cEEEeehhhC
Confidence 4455555554433 36666666665542 1100 01122333 3445556675 4688888764
No 25
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=82.83 E-value=9.1 Score=33.29 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHh
Q 040066 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLK 121 (202)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (202)
.....++++|++.|++++|||.+.. ....+....+ +..+.+..-.|... .++.-....++++-..
T Consensus 79 ~~~~~i~ka~i~~gv~yvDts~~~~----~~~~~~~~a~---~Agit~v~~~G~dP--------Gi~nv~a~~a~~~~~~ 143 (389)
T COG1748 79 FVDLTILKACIKTGVDYVDTSYYEE----PPWKLDEEAK---KAGITAVLGCGFDP--------GITNVLAAYAAKELFD 143 (389)
T ss_pred hhhHHHHHHHHHhCCCEEEcccCCc----hhhhhhHHHH---HcCeEEEcccCcCc--------chHHHHHHHHHHHhhc
Confidence 4556899999999999999997655 2222222222 33455555554321 1122222232332222
Q ss_pred HcCCCcccEEEeecCCCC
Q 040066 122 RLDVEYIDLYYQHRVDTT 139 (202)
Q Consensus 122 ~Lg~d~iDl~~lh~~~~~ 139 (202)
.++++|+|..+.|+..
T Consensus 144 --~i~si~iy~g~~g~~~ 159 (389)
T COG1748 144 --EIESIDIYVGGLGEHG 159 (389)
T ss_pred --cccEEEEEEecCCCCC
Confidence 5889999999988665
No 26
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=82.20 E-value=9.5 Score=33.75 Aligned_cols=59 Identities=20% Similarity=0.160 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-------------C-CHH---HHH-HHHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-------------I-PIE---DTM-GELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------------~-~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+++.++..++ ++.++|++|.+.-.+.. . +.+ +.+ .+.+.|.+.|. +.+++|||.-
T Consensus 228 T~e~~~~~l~~~~~-l~~~~is~y~L~~~pgT~l~~~~~~g~l~~~~~~~~~~~my~~~~~~L~~~Gy-~~yeis~far 304 (449)
T PRK09058 228 TPEIWQQDLAIVRD-LGLDGVDLYALNLLPGTPLAKAVEKGKLPPPATPAERADMYAYGVEFLAKAGW-RQLSNSHWAR 304 (449)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEeccccCCCCHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHCCC-eEEeeeeeec
Confidence 66777777766654 88899999887632110 0 112 122 34455677786 5689999874
No 27
>PRK13796 GTPase YqeH; Provisional
Probab=82.16 E-value=32 Score=29.58 Aligned_cols=122 Identities=11% Similarity=0.129 Sum_probs=80.4
Q ss_pred CCCHHHHHHHHHHHHHcC---CCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQG---ITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
..++++..++++...+.- +-++|..+.-+. -...+.+... .+.-++|.+|.-.... ....+.+.+
T Consensus 53 ~~~~~~~~~~l~~i~~~~~lIv~VVD~~D~~~s---~~~~L~~~~~--~kpviLViNK~DLl~~-------~~~~~~i~~ 120 (365)
T PRK13796 53 SLTDDDFLKLLNGIGDSDALVVNVVDIFDFNGS---WIPGLHRFVG--NNPVLLVGNKADLLPK-------SVKKNKVKN 120 (365)
T ss_pred CCCHHHHHHHHHhhcccCcEEEEEEECccCCCc---hhHHHHHHhC--CCCEEEEEEchhhCCC-------ccCHHHHHH
Confidence 356677777777776555 566786664442 3344555443 3456789999854211 123456666
Q ss_pred HHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHH
Q 040066 115 CCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIR 172 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~ 172 (202)
-++...+.+|....|++.+..-. ...++++.+.+.++.+.+.+-.+|.+|..-+.|-
T Consensus 121 ~l~~~~k~~g~~~~~v~~vSAk~-g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKSTLi 177 (365)
T PRK13796 121 WLRQEAKELGLRPVDVVLISAQK-GHGIDELLEAIEKYREGRDVYVVGVTNVGKSTLI 177 (365)
T ss_pred HHHHHHHhcCCCcCcEEEEECCC-CCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHHHH
Confidence 66666777786555777766443 4668889999988877788999999998866543
No 28
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=80.38 E-value=34 Score=28.79 Aligned_cols=131 Identities=11% Similarity=-0.004 Sum_probs=77.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCc---C-----CcCCCC----hhHHHHHHHHhcCC---CCCEEEEeccCcccCCCCCcc
Q 040066 40 PVEVGISIIKHAFDQGITFFDTA---D-----VYGPNN----ANELLVGKALKQLP---REKVQLATKFGIVKFDMSDVV 104 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA---~-----~Yg~~g----~~e~~lg~~l~~~~---r~~~~i~tK~~~~~~~~~~~~ 104 (202)
+.++..++.+.+.+.|+..||-= + .||. | ..-+.+.+.++... ..++-|+-|+.....
T Consensus 73 ~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~-Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~------ 145 (312)
T PRK10550 73 YPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGG-GATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWD------ 145 (312)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCC-chHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCC------
Confidence 56677777788888999999921 1 2442 2 11233444443321 124667777643111
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHH--H-HHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCe
Q 040066 105 VKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIE--D-TMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPV 180 (202)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~--~-~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~ 180 (202)
+.+. ...+-+.++..| +|.+.+|.-....... . -|+.+.++++.-.|.-||... +++++.+++++.+..
T Consensus 146 ---~~~~-~~~~a~~l~~~G---vd~i~Vh~Rt~~~~y~g~~~~~~~i~~ik~~~~iPVi~nGdI~t~~da~~~l~~~g~ 218 (312)
T PRK10550 146 ---SGER-KFEIADAVQQAG---ATELVVHGRTKEDGYRAEHINWQAIGEIRQRLTIPVIANGEIWDWQSAQQCMAITGC 218 (312)
T ss_pred ---CchH-HHHHHHHHHhcC---CCEEEECCCCCccCCCCCcccHHHHHHHHhhcCCcEEEeCCcCCHHHHHHHHhccCC
Confidence 1112 235556677777 5666778653322111 1 367788888877788899888 678888888766555
Q ss_pred eEEc
Q 040066 181 TALQ 184 (202)
Q Consensus 181 ~~~q 184 (202)
+.++
T Consensus 219 DgVm 222 (312)
T PRK10550 219 DAVM 222 (312)
T ss_pred CEEE
Confidence 5555
No 29
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=79.92 E-value=37 Score=28.94 Aligned_cols=95 Identities=16% Similarity=0.113 Sum_probs=51.8
Q ss_pred CCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEE-Eeec-CCCC----CCHHHHHHHHHHHHHcCCc
Q 040066 85 EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLY-YQHR-VDTT----IPIEDTMGELKKLVEEGKI 158 (202)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~-~lh~-~~~~----~~~~~~~~~l~~l~~~G~v 158 (202)
.++.|..|++......++ .+.+... .+-+.|+.+|+|+|++- -.|. +... .+-........++++.=.+
T Consensus 203 ~d~~v~iRi~~~D~~~~g----~~~~e~~-~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~i 277 (353)
T cd02930 203 EDFIIIYRLSMLDLVEGG----STWEEVV-ALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAVDI 277 (353)
T ss_pred CCceEEEEecccccCCCC----CCHHHHH-HHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhCCC
Confidence 467788888653221111 2333332 34455778898888772 1231 1110 0101123344566666566
Q ss_pred cEEEecC-CCHHHHHHHhcCCCeeEEc
Q 040066 159 KYIGLSE-ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 159 r~iGvsn-~~~~~l~~~~~~~~~~~~q 184 (202)
.-++... ++++.++++++....+.++
T Consensus 278 PVi~~G~i~~~~~a~~~i~~g~~D~V~ 304 (353)
T cd02930 278 PVIASNRINTPEVAERLLADGDADMVS 304 (353)
T ss_pred CEEEcCCCCCHHHHHHHHHCCCCChhH
Confidence 6677766 5788888888776666665
No 30
>PRK05660 HemN family oxidoreductase; Provisional
Probab=79.06 E-value=24 Score=30.46 Aligned_cols=39 Identities=13% Similarity=-0.066 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVG 76 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg 76 (202)
..+.+++.+.++.+.+.|+..+-+--.||-|+.+...+-
T Consensus 139 ~~~~~~~~~ai~~~~~~G~~~v~~dli~Glpgqt~~~~~ 177 (378)
T PRK05660 139 IHGPDEAKRAAKLAQGLGLRSFNLDLMHGLPDQSLEEAL 177 (378)
T ss_pred CCCHHHHHHHHHHHHHcCCCeEEEEeecCCCCCCHHHHH
Confidence 345556666666666666654333334554444444333
No 31
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=79.06 E-value=35 Score=28.14 Aligned_cols=130 Identities=13% Similarity=0.104 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCc----------CCcCCCChhHHHHHHHHhcCCC-CCEEEEeccCcccCCCCCcccCCC
Q 040066 40 PVEVGISIIKHAFDQGITFFDTA----------DVYGPNNANELLVGKALKQLPR-EKVQLATKFGIVKFDMSDVVVKGT 108 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA----------~~Yg~~g~~e~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~ 108 (202)
+.++..++.+.+.+.|+..||.- ..|+. +.+.+-+.++...+ -++-|.-|+.+.
T Consensus 100 ~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~---~~~~~~eiv~~vr~~~~~Pv~vKl~~~------------ 164 (296)
T cd04740 100 TVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGT---DPEAVAEIVKAVKKATDVPVIVKLTPN------------ 164 (296)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccC---CHHHHHHHHHHHHhccCCCEEEEeCCC------------
Confidence 45777788888889999999862 12332 45555555554322 256688887542
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEE------eecCCCC-------------CCHHHHHHHHHHHHHcCCccEEEecC-CCH
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYY------QHRVDTT-------------IPIEDTMGELKKLVEEGKIKYIGLSE-ASP 168 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~------lh~~~~~-------------~~~~~~~~~l~~l~~~G~vr~iGvsn-~~~ 168 (202)
.+.+. .+-+.+...|.|.|++.- +|..... ....-.++.+.++++.=.+.-||+.. +++
T Consensus 165 ~~~~~-~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ipii~~GGI~~~ 243 (296)
T cd04740 165 VTDIV-EIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIPIIGVGGIASG 243 (296)
T ss_pred chhHH-HHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCCEEEECCCCCH
Confidence 11222 233456778877766531 1110000 00112466677777655688899988 578
Q ss_pred HHHHHHhcCCCeeEEccc
Q 040066 169 DTIRRAHAVHPVTALQME 186 (202)
Q Consensus 169 ~~l~~~~~~~~~~~~q~~ 186 (202)
+.+.+++..+ .+.+|+-
T Consensus 244 ~da~~~l~~G-Ad~V~ig 260 (296)
T cd04740 244 EDALEFLMAG-ASAVQVG 260 (296)
T ss_pred HHHHHHHHcC-CCEEEEc
Confidence 8888887654 5777743
No 32
>PLN02363 phosphoribosylanthranilate isomerase
Probab=77.78 E-value=8.6 Score=31.46 Aligned_cols=69 Identities=17% Similarity=0.280 Sum_probs=45.0
Q ss_pred HhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHhcCCCeeEEcccCCc
Q 040066 120 LKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
..++|.|++-+++...-......+ ..+.+.+......++.+||. |-+++.+.++.+...++++|++-+.
T Consensus 63 a~~~GaD~iGfIf~~~SpR~Vs~e-~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQLHG~e 132 (256)
T PLN02363 63 AVEAGADFIGMILWPKSKRSISLS-VAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQLHGNG 132 (256)
T ss_pred HHHcCCCEEEEecCCCCCCcCCHH-HHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 346899999997543222223333 33333333333246679996 6888899999999999999997643
No 33
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=75.54 E-value=27 Score=27.67 Aligned_cols=120 Identities=16% Similarity=0.202 Sum_probs=62.6
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCc-CCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTA-DVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA-~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
..+.++..++++...+.||..|++. +..+. ...+.+.+..+..+.. .+.+...+ ....++.++
T Consensus 10 ~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~--~~~~~v~~~~~~~~~~--~~~~~~~~------------~~~~i~~~~ 73 (237)
T PF00682_consen 10 AFSTEEKLEIAKALDEAGVDYIEVGFPFASE--DDFEQVRRLREALPNA--RLQALCRA------------NEEDIERAV 73 (237)
T ss_dssp T--HHHHHHHHHHHHHHTTSEEEEEHCTSSH--HHHHHHHHHHHHHHSS--EEEEEEES------------CHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCEEEEcccccCH--HHHHHhhhhhhhhccc--ccceeeee------------hHHHHHHHH
Confidence 3577888999999999999999999 33331 1223344443332222 22222211 345555555
Q ss_pred HHHHhHcCCCcccEEEeecCC-----CCCC----HHHHHHHHHHHHHcCCccEEEecC---CCHHHHHHH
Q 040066 117 EASLKRLDVEYIDLYYQHRVD-----TTIP----IEDTMGELKKLVEEGKIKYIGLSE---ASPDTIRRA 174 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~-----~~~~----~~~~~~~l~~l~~~G~vr~iGvsn---~~~~~l~~~ 174 (202)
+.. ...|.+.+.++.--++. -... ++.+.+.++.+++.|.--.+++-. ++++.+.++
T Consensus 74 ~~~-~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 74 EAA-KEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp HHH-HHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHH
T ss_pred Hhh-HhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHH
Confidence 533 45676666654321110 0011 334555666667777776777644 344544443
No 34
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=75.48 E-value=26 Score=30.39 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCC-------------CCCHH---HHHH-HHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDT-------------TIPIE---DTMG-ELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~-------------~~~~~---~~~~-~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+++.++..++ |+.++|.+|.+.-.+. ..+.+ +.++ +.+.|.+.|.. .+++|||.-
T Consensus 175 t~e~~~~~l~~~~~-l~p~his~y~L~i~~gT~l~~~~~~g~~~~p~~~~~~~~~~~~~~~L~~~Gy~-~yeis~fa~ 250 (390)
T PRK06582 175 TLKDWQEELKQAMQ-LATSHISLYQLTIEKGTPFYKLFKEGNLILPHSDAAAEMYEWTNHYLESKKYF-RYEISNYAK 250 (390)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEecCEEccCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCc-eeeceeeeC
Confidence 56777888887775 7888888887753211 00111 2233 33455666764 578999873
No 35
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=74.48 E-value=11 Score=29.84 Aligned_cols=67 Identities=13% Similarity=0.205 Sum_probs=44.9
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC-ccEEEecC-CCHHHHHHHhcCCCeeEEcccCCc
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGK-IKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~-vr~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
....+|.||+-+++.-........++ .+++...-. ++.+||.. .+.+.+.++++...++.+|++-..
T Consensus 17 ~a~~~gad~iG~If~~~SpR~Vs~~~----a~~i~~~v~~~~~VgVf~n~~~~~i~~i~~~~~ld~VQlHG~e 85 (208)
T COG0135 17 AAAKAGADYIGFIFVPKSPRYVSPEQ----AREIASAVPKVKVVGVFVNESIEEILEIAEELGLDAVQLHGDE 85 (208)
T ss_pred HHHHcCCCEEEEEEcCCCCCcCCHHH----HHHHHHhCCCCCEEEEECCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 34678999988876652222233333 233333322 78999987 667789999999999999988763
No 36
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=73.56 E-value=22 Score=31.43 Aligned_cols=59 Identities=20% Similarity=0.237 Sum_probs=34.6
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEe-ecCCC-----------CCCHHHH----HHHHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQ-HRVDT-----------TIPIEDT----MGELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~~-----------~~~~~~~----~~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+.+.++..+ .++.++|.+|.+ |.|.. ..+.++. ..+.+.|.+.|.. .+|+++|.-
T Consensus 217 t~e~~~~tl~~~~-~l~p~~i~~y~l~~~p~~~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~-~~~~~~far 291 (453)
T PRK13347 217 TVESFRETLDKVI-ALSPDRIAVFGYAHVPSRRKNQRLIDEAALPDAEERLRQARAVADRLLAAGYV-PIGLDHFAL 291 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEeccccccchhhHHhcCCccCCcCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 5666766666655 577788877765 32210 0112222 2345567777864 689999874
No 37
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=73.48 E-value=51 Score=27.27 Aligned_cols=132 Identities=11% Similarity=0.048 Sum_probs=75.0
Q ss_pred CHHHHHHHHHHHHHcC-CCeeeC---cCC--c-CC-CChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHH
Q 040066 40 PVEVGISIIKHAFDQG-ITFFDT---ADV--Y-GP-NNANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPE 110 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~G-i~~~Dt---A~~--Y-g~-~g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~ 110 (202)
+.++..++.+.+.+.| +..||- .++ + |. -+...+.+-+.++... .-++-|.-|+.+. .+
T Consensus 102 ~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~------------~~ 169 (301)
T PRK07259 102 TEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPN------------VT 169 (301)
T ss_pred CHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCC------------ch
Confidence 4677788888888898 999985 111 1 10 0224455555555432 1256788888642 12
Q ss_pred HHHHHHHHHHhHcCCCcccEEE-eecC--CCC--C--------C------HHHHHHHHHHHHHcCCccEEEecC-CCHHH
Q 040066 111 YVRACCEASLKRLDVEYIDLYY-QHRV--DTT--I--------P------IEDTMGELKKLVEEGKIKYIGLSE-ASPDT 170 (202)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~-lh~~--~~~--~--------~------~~~~~~~l~~l~~~G~vr~iGvsn-~~~~~ 170 (202)
.+. .+-+.++..|+|.|++.- ++.. +.. . . ..-.++.+.++++.=.+--||+.. .+++.
T Consensus 170 ~~~-~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ipvi~~GGI~~~~d 248 (301)
T PRK07259 170 DIV-EIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIPIIGMGGISSAED 248 (301)
T ss_pred hHH-HHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCCEEEECCCCCHHH
Confidence 222 344557778877776531 1111 000 0 0 012456666666654688899998 57888
Q ss_pred HHHHhcCCCeeEEcc
Q 040066 171 IRRAHAVHPVTALQM 185 (202)
Q Consensus 171 l~~~~~~~~~~~~q~ 185 (202)
+.+++..+ .+.+|+
T Consensus 249 a~~~l~aG-Ad~V~i 262 (301)
T PRK07259 249 AIEFIMAG-ASAVQV 262 (301)
T ss_pred HHHHHHcC-CCceeE
Confidence 88877654 567764
No 38
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=73.30 E-value=11 Score=33.44 Aligned_cols=66 Identities=15% Similarity=0.227 Sum_probs=44.1
Q ss_pred HhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHhcCCCeeEEcccCCc
Q 040066 120 LKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
...+|.|++-+++...-....+.+.+ +.+.+... ++.+||- |-+++.+.++.+...++++|++-+.
T Consensus 273 a~~~GaD~lGfIf~~~SpR~V~~~~a-~~i~~~l~---v~~VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e 339 (454)
T PRK09427 273 AYDAGAVYGGLIFVEKSPRYVSLEQA-QEIIAAAP---LRYVGVFRNADIEDIVDIAKQLSLAAVQLHGDE 339 (454)
T ss_pred HHhCCCCEEeeEeCCCCCCCCCHHHH-HHHHHhCC---CCEEEEEeCCCHHHHHHHHHHcCCCEEEeCCCC
Confidence 45689999988743322222333333 22222222 8899998 6778899999999999999998765
No 39
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=73.21 E-value=59 Score=27.87 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC-----------------HHHHHHHHH-HHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP-----------------IEDTMGELK-KLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~-----------------~~~~~~~l~-~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+++.++..+ .++.+++.+|.+.-.+ .++ ..+.+.... .|.+.|. ..+++|||.-
T Consensus 173 t~~~~~~tl~~~~-~l~~~~i~~y~l~~~~-gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~-~~ye~s~fa~ 248 (375)
T PRK05628 173 SDDDWRASLDAAL-EAGVDHVSAYALIVED-GTALARRVRRGELPAPDDDVLADRYELADARLSAAGF-DWYEVSNWAR 248 (375)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEeeeeecCC-CChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCC-CeeeeccccC
Confidence 5677777666554 4788888887776321 111 113333443 4455566 5789999874
No 40
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=72.57 E-value=28 Score=27.80 Aligned_cols=76 Identities=22% Similarity=0.170 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEA 118 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (202)
.++++..++.+.+.++|..++=|+..|+.+|.+-+.+....+..+ .++-|---.+.. +.+...+-++.
T Consensus 133 L~~e~i~~a~~~~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~-~~~~IKasGGIr-----------t~~~a~~~i~a 200 (221)
T PRK00507 133 LTDEEKVKACEIAKEAGADFVKTSTGFSTGGATVEDVKLMRETVG-PRVGVKASGGIR-----------TLEDALAMIEA 200 (221)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC-CCceEEeeCCcC-----------CHHHHHHHHHc
Confidence 467888999999999999999999999765666666555444322 222221111111 45666666666
Q ss_pred HHhHcCCC
Q 040066 119 SLKRLDVE 126 (202)
Q Consensus 119 sL~~Lg~d 126 (202)
--.++|++
T Consensus 201 GA~riGtS 208 (221)
T PRK00507 201 GATRLGTS 208 (221)
T ss_pred CcceEccC
Confidence 66666665
No 41
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=72.31 E-value=35 Score=29.23 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=12.5
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEe
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQ 133 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~l 133 (202)
+.+.+.+.++.. .+++.+++.++.+
T Consensus 165 t~~~~~~~l~~~-~~l~~~~i~~y~l 189 (377)
T PRK08599 165 TIEDFKESLAKA-LALDIPHYSAYSL 189 (377)
T ss_pred CHHHHHHHHHHH-HccCCCEEeeece
Confidence 445555555443 3355565555543
No 42
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=72.25 E-value=26 Score=28.38 Aligned_cols=109 Identities=21% Similarity=0.208 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHH-Hhc------------------CCCCCEEEEeccCcccCC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKA-LKQ------------------LPREKVQLATKFGIVKFD 99 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~-l~~------------------~~r~~~~i~tK~~~~~~~ 99 (202)
.+.++..++.++|-+.||.+|=|..... +-..+-+. +.. .....++|+|=.
T Consensus 53 l~~e~~~~L~~~~~~~gi~f~stpfd~~----s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~------ 122 (241)
T PF03102_consen 53 LSEEQHKELFEYCKELGIDFFSTPFDEE----SVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGM------ 122 (241)
T ss_dssp S-HHHHHHHHHHHHHTT-EEEEEE-SHH----HHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT------
T ss_pred CCHHHHHHHHHHHHHcCCEEEECCCCHH----HHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCC------
Confidence 5688999999999999999998886433 22232111 000 001123333221
Q ss_pred CCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHH-HHHHHHHHHHHc-CCccEEEecCCCHH
Q 040066 100 MSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIE-DTMGELKKLVEE-GKIKYIGLSEASPD 169 (202)
Q Consensus 100 ~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~-~~~~~l~~l~~~-G~vr~iGvsn~~~~ 169 (202)
.+.+.|.++++...++-+ -++.++|+.... .+.+ --++.|..|++. | --||.|.|+..
T Consensus 123 -------stl~EI~~Av~~~~~~~~---~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~--~~vG~SDHt~g 183 (241)
T PF03102_consen 123 -------STLEEIERAVEVLREAGN---EDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG--VPVGYSDHTDG 183 (241)
T ss_dssp ---------HHHHHHHHHHHHHHCT-----EEEEEE-SSSS--GGG--TTHHHHHHHHST--SEEEEEE-SSS
T ss_pred -------CCHHHHHHHHHHHHhcCC---CCEEEEecCCCCCCChHHcChHHHHHHHHhcC--CCEEeCCCCCC
Confidence 145677777766644444 689999998654 3343 357788888866 5 46899999864
No 43
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=71.14 E-value=40 Score=27.66 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=50.5
Q ss_pred CHH-HHHHHHHHHHHcCCCeeeCcCCcCCCChhHH---HHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 40 PVE-VGISIIKHAFDQGITFFDTADVYGPNNANEL---LVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 40 ~~~-~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~---~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
+++ +...+.+.|.++|.+|+=|+..|+.+|-+.+ ++-+.+++.. ..+ +.-|..- +. -+.+...+
T Consensus 144 ~~ee~i~~a~~~a~~aGADFVKTSTGf~~~gAt~edv~lm~~~i~~~~~~~~--vgIKAsG------GI---rt~~~A~~ 212 (257)
T PRK05283 144 KDEALIRKASEIAIKAGADFIKTSTGKVPVNATLEAARIMLEVIRDMGVAKT--VGFKPAG------GV---RTAEDAAQ 212 (257)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHhcccCCC--eeEEccC------CC---CCHHHHHH
Confidence 345 4888999999999999999999986343433 3334443210 111 3334321 10 15777888
Q ss_pred HHHHHHhHcCCCccc
Q 040066 115 CCEASLKRLDVEYID 129 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iD 129 (202)
-++..-+.||.++++
T Consensus 213 ~i~ag~~~lg~~~~~ 227 (257)
T PRK05283 213 YLALADEILGADWAD 227 (257)
T ss_pred HHHHHHHHhChhhcC
Confidence 888888999987755
No 44
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=70.32 E-value=15 Score=33.95 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=47.6
Q ss_pred HhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHhcCCCeeEEcccCCc
Q 040066 120 LKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
...+|.|++-+++..........+.+...+.+......++.+||- |-+++.+.++.+...++++|++-+.
T Consensus 19 a~~~gaD~iGfIf~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG~e 89 (610)
T PRK13803 19 AVDMLPDFIGFIFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHGAE 89 (610)
T ss_pred HHHcCCCEEEEEecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC
Confidence 356899999998655433334444423334333333357789996 6888999999999999999987654
No 45
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=69.60 E-value=41 Score=26.03 Aligned_cols=40 Identities=15% Similarity=0.132 Sum_probs=25.6
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 040066 128 IDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTI 171 (202)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l 171 (202)
+|.+|||..++ . +..+.+.+......++.+|+++.+..++
T Consensus 74 ~d~Vqlhg~e~---~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~ 113 (203)
T cd00405 74 LDVVQLHGDES---P-EYCAQLRARLGLPVIKAIRVKDEEDLEK 113 (203)
T ss_pred CCEEEECCCCC---H-HHHHHHHhhcCCcEEEEEecCChhhHHH
Confidence 78899997642 1 2333443333346789999998765544
No 46
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=69.60 E-value=38 Score=26.84 Aligned_cols=73 Identities=22% Similarity=0.217 Sum_probs=48.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhH---HHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNANE---LLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e---~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
++++...+.+.|.++|..++=|+..|+.+|-+. +.+.+.++. + +..|..- + ++ +.+...+.+
T Consensus 130 ~~~ei~~a~~ia~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~----~--v~IKaaG------G--ir-t~~~a~~~i 194 (211)
T TIGR00126 130 TDEEIRKACEICIDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD----T--IGVKASG------G--VR-TAEDAIAMI 194 (211)
T ss_pred CHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc----C--CeEEEeC------C--CC-CHHHHHHHH
Confidence 557778999999999999999998887533333 234444432 1 2233311 1 11 677888888
Q ss_pred HHHHhHcCCCc
Q 040066 117 EASLKRLDVEY 127 (202)
Q Consensus 117 ~~sL~~Lg~d~ 127 (202)
+.--.|+|+++
T Consensus 195 ~aGa~riGts~ 205 (211)
T TIGR00126 195 EAGASRIGASA 205 (211)
T ss_pred HHhhHHhCcch
Confidence 88889999875
No 47
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=68.68 E-value=55 Score=28.72 Aligned_cols=59 Identities=15% Similarity=-0.048 Sum_probs=35.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-------CCHH---HHH-HHHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-------IPIE---DTM-GELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-------~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+.+.++..+ .|+.+++.++.+.-.+.. .+.+ +.+ .+.+.|.+.|. +.+++|||.-
T Consensus 206 t~e~~~~~l~~~~-~l~~~~is~y~L~~~~~T~l~~~~~~~~~~~~~m~~~~~~~L~~~Gy-~~yei~~far 275 (430)
T PRK08208 206 THASWMESLDQAL-VYRPEELFLYPLYVRPLTGLGRRARAWDDQRLSLYRLARDLLLEAGY-TQTSMRMFRR 275 (430)
T ss_pred CHHHHHHHHHHHH-hCCCCEEEEccccccCCCccchhcCCCHHHHHHHHHHHHHHHHHcCC-eEEeecceec
Confidence 6677777777766 478888888876532211 0111 233 34445666675 5689999874
No 48
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=68.63 E-value=62 Score=26.26 Aligned_cols=132 Identities=16% Similarity=0.095 Sum_probs=64.7
Q ss_pred cceeeecccCCCCCCCCCCHHHHHHHHHHHH-HcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCC
Q 040066 22 SKLGFGCMGLTGIYNDPVPVEVGISIIKHAF-DQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDM 100 (202)
Q Consensus 22 s~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~-~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~ 100 (202)
|+|-+||..+. +. ++++.|+ .+|-..+=+|----+.+ ....-...+.-++++++.+---...
T Consensus 9 SRL~lGTgky~-------s~----~~m~~ai~aSg~evvTvalRR~~~~-~~~~~~~~~~~i~~~~~~lLPNTaG----- 71 (247)
T PF05690_consen 9 SRLILGTGKYP-------SP----EVMREAIEASGAEVVTVALRRVNLG-SKPGGDNILDYIDRSGYTLLPNTAG----- 71 (247)
T ss_dssp -SEEEE-STSS-------SH----HHHHHHHHHTT-SEEEEECCGSTTT-S-TTCHHCCCCTTCCTSEEEEE-TT-----
T ss_pred cceEEecCCCC-------CH----HHHHHHHHHhCCcEEEEEEecccCC-CCCCCccHHHHhcccCCEECCcCCC-----
Confidence 68999997652 23 4455555 46777766553211100 0000012233344455443211110
Q ss_pred CCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhc
Q 040066 101 SDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHA 176 (202)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~ 176 (202)
+.+.+......+-+.+.++++.|=+=.+.++... .+..+++++-+.|+++|-+ -+=-++-++-..+++.+
T Consensus 72 -----c~tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~-VlPY~~~D~v~akrL~d 142 (247)
T PF05690_consen 72 -----CRTAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLED 142 (247)
T ss_dssp ------SSHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-E-EEEEE-S-HHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCE-EeecCCCCHHHHHHHHH
Confidence 2256666666777888889888777666655443 4567999999999999975 23334444443444433
No 49
>PRK05414 urocanate hydratase; Provisional
Probab=68.56 E-value=17 Score=32.70 Aligned_cols=135 Identities=15% Similarity=0.099 Sum_probs=81.8
Q ss_pred HHHHHHHcCCCeee--CcCCcCC-------CChhHHHHHHHHhcC---CCCCEEEEeccCcccCCCCCcccCCCHH--HH
Q 040066 47 IIKHAFDQGITFFD--TADVYGP-------NNANELLVGKALKQL---PREKVQLATKFGIVKFDMSDVVVKGTPE--YV 112 (202)
Q Consensus 47 ~l~~A~~~Gi~~~D--tA~~Yg~-------~g~~e~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~~~~~~~~~--~i 112 (202)
-+....+.|+..+= ||.+|-. .|.-|.++..+-+.. .+.++++++=++-.....+-...-...- .+
T Consensus 117 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~a~rk~f~g~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 196 (556)
T PRK05414 117 HFNELEAKGLTMYGQMTAGSWIYIGSQGIVQGTYETFAEAARQHFGGDLAGRLVLTAGLGGMGGAQPLAATMAGAVCLAV 196 (556)
T ss_pred HHHHHHHcccccccCccccceeEEcCceeeecHHHHHHHHHHHhcCCCCceeEEEEecCCccccccHHHHHhcCceEEEE
Confidence 35666677777654 5544433 155566555443332 2567888888776543321000000000 00
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC-CCeeEE--cccCC
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPVTAL--QMEWS 188 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~~~~~~--q~~~n 188 (202)
+-.-.+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.++++.+. ..|+++ |..+|
T Consensus 197 Evd~~ri~kR~~~gyld~~~-------~~Ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~~~i~pDlvtDQTSaH 268 (556)
T PRK05414 197 EVDESRIDKRLRTGYLDEKA-------DDLDEALALAEEAKAAGEPLSIGLLGNAADVLPELVRRGIRPDLVTDQTSAH 268 (556)
T ss_pred EECHHHHHHHHhCCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEEeccHHHHHHHHHHcCCCCCccCcCcccc
Confidence 11123445788888988753 45889999999999999999999999888888888765 344444 55553
No 50
>TIGR01228 hutU urocanate hydratase. This model represents the second of four enzymes involved in the degradation of histidine to glutamate.
Probab=68.19 E-value=16 Score=32.68 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=80.8
Q ss_pred HHHHHHHcCCCeee--CcCCcCC-------CChhHHHHHHHHhcC---CCCCEEEEeccCcccCCCCC---------ccc
Q 040066 47 IIKHAFDQGITFFD--TADVYGP-------NNANELLVGKALKQL---PREKVQLATKFGIVKFDMSD---------VVV 105 (202)
Q Consensus 47 ~l~~A~~~Gi~~~D--tA~~Yg~-------~g~~e~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~---------~~~ 105 (202)
-+....+.|+..+= ||.+|-. .|.-|.++..+-+.. -+.++++++=++-.....+- ...
T Consensus 108 ~f~~l~~~Gl~mYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~f~~~L~G~~~lTaGLGGMgGAQPlA~~mag~v~i~v 187 (545)
T TIGR01228 108 HFHELEAKGLMMYGQMTAGSWIYIGTQGILQGTYETFAELARQHFGGSLKGKWVLTAGLGGMGGAQPLAVTMNGGVSIAV 187 (545)
T ss_pred HHHHHHHcccccccCccccceEEEcCcceeecHHHHHHHHHHHhcCCCCceeEEEEeCCCccccccHHHHHHcCceEEEE
Confidence 35666677777654 4544432 155566555443332 25678888777655433210 000
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC-CCeeEE-
Q 040066 106 KGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPVTAL- 183 (202)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~~~~~~- 183 (202)
..+ -.+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.++++.+. ..|+++
T Consensus 188 Evd-------~~ri~kR~~~gyld~~~-------~~ldeal~~~~~a~~~~~~~SIg~~GNaadv~~~l~~r~i~pDlvt 253 (545)
T TIGR01228 188 EVD-------ESRIDKRLETKYCDEQT-------DSLDEALARAEEAKAEGKPISIGLLGNAAEVLPELLKRGVVPDVVT 253 (545)
T ss_pred EEC-------HHHHHHHHhcCcceeEc-------CCHHHHHHHHHHHHHcCCceEEEeeccHHHHHHHHHHcCCCCCCcC
Confidence 112 23445688888888743 45889999999999999999999999888888888775 344444
Q ss_pred -cccCC
Q 040066 184 -QMEWS 188 (202)
Q Consensus 184 -q~~~n 188 (202)
|..+|
T Consensus 254 DQTSaH 259 (545)
T TIGR01228 254 DQTSAH 259 (545)
T ss_pred CCCccc
Confidence 55553
No 51
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.96 E-value=71 Score=26.64 Aligned_cols=139 Identities=13% Similarity=0.088 Sum_probs=74.7
Q ss_pred CCCCHHHHHH-------HHHHHHHcCCCeeeCcCC-------------------cCCCChhHH---HHHHHHhc---CCC
Q 040066 37 DPVPVEVGIS-------IIKHAFDQGITFFDTADV-------------------YGPNNANEL---LVGKALKQ---LPR 84 (202)
Q Consensus 37 ~~~~~~~~~~-------~l~~A~~~Gi~~~DtA~~-------------------Yg~~g~~e~---~lg~~l~~---~~r 84 (202)
..++.++..+ ..+.|.++|++.||--.. || |.-|. ++-+.++. .-.
T Consensus 129 ~~mt~~ei~~~i~~~~~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yG--gs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 129 REMTKEEIEQIIEDFAAAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYG--GSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccC--CCHHHHHHHHHHHHHHHHHHcC
Confidence 3456555544 445667899999885322 33 33332 22222222 112
Q ss_pred CCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC----------HHHHHHHHHHHHH
Q 040066 85 EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP----------IEDTMGELKKLVE 154 (202)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----------~~~~~~~l~~l~~ 154 (202)
+++.|..|+.+.....++ .+.+... .+-+.|+..|+|+|++ +......+ ....++.+..+++
T Consensus 207 ~d~~i~vris~~~~~~~g----~~~~e~~-~la~~l~~~G~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~ 278 (327)
T cd02803 207 PDFPVGVRLSADDFVPGG----LTLEEAI-EIAKALEEAGVDALHV---SGGSYESPPPIIPPPYVPEGYFLELAEKIKK 278 (327)
T ss_pred CCceEEEEechhccCCCC----CCHHHHH-HHHHHHHHcCCCEEEe---CCCCCcccccccCCCCCCcchhHHHHHHHHH
Confidence 467888888754322111 2333333 3344567778666554 43321110 1233455555666
Q ss_pred cCCccEEEecCC-CHHHHHHHhcCCCeeEEcc
Q 040066 155 EGKIKYIGLSEA-SPDTIRRAHAVHPVTALQM 185 (202)
Q Consensus 155 ~G~vr~iGvsn~-~~~~l~~~~~~~~~~~~q~ 185 (202)
.=.+.-++..+. +++.++++++....+.+++
T Consensus 279 ~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~i 310 (327)
T cd02803 279 AVKIPVIAVGGIRDPEVAEEILAEGKADLVAL 310 (327)
T ss_pred HCCCCEEEeCCCCCHHHHHHHHHCCCCCeeee
Confidence 545777888885 4888999988766676664
No 52
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=67.52 E-value=30 Score=26.89 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.4
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
.|++++.++++.|++.|++..|.-
T Consensus 9 ~d~~~~~~~v~~~l~~g~~~~~i~ 32 (197)
T TIGR02370 9 GEEDDVVEGAQKALDAGIDPIELI 32 (197)
T ss_pred cCHHHHHHHHHHHHHcCCCHHHHH
Confidence 478899999999999999888754
No 53
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=64.98 E-value=52 Score=29.12 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEe-ecCC----------C-CCCHH---HHHH-HHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQ-HRVD----------T-TIPIE---DTMG-ELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~l-h~~~----------~-~~~~~---~~~~-~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+.+.++..++ ++.+++.+|.+ +.|. . ..+.+ +.+. +.+.|.+.|. ..++++||.-
T Consensus 216 t~e~~~~tl~~~~~-l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L~~~Gy-~~~~~~~fa~ 290 (455)
T TIGR00538 216 TKESFAKTLEKVAE-LNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFLTEAGY-QFIGMDHFAK 290 (455)
T ss_pred CHHHHHHHHHHHHh-cCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHHHHCCC-EEEeccceeC
Confidence 67777777776554 88888888876 2221 0 01122 2233 3445556675 5799999874
No 54
>PF01175 Urocanase: Urocanase; InterPro: IPR023637 Urocanase [] (also known as imidazolonepropionate hydrolase or urocanate hydratase) is the enzyme that catalyzes the second step in the degradation of histidine, the hydration of urocanate into imidazolonepropionate. urocanate + H2O = 4,5-dihydro-4-oxo-5-imidazolepropanoate Urocanase is found in some bacteria (gene hutU), in the liver of many vertebrates and has also been found in the plant Trifolium repens (white clover). Urocanase is a protein of about 60 Kd, it binds tightly to NAD+ and uses it as an electrophil cofactor. A conserved cysteine has been found to be important for the catalytic mechanism and could be involved in the binding of the NAD+. This enzyme is a symmetric homodimer with tightly bound NAD+ cofactors. Each subunit consists of a typical NAD-binding domain inserted into a larger core domain that forms the dimer interface []. This entry represents the Urocanase subunit structural domain.; GO: 0016153 urocanate hydratase activity; PDB: 2V7G_A 1UWK_A 1UWL_B 1W1U_B 2FKN_C 1X87_B.
Probab=64.57 E-value=23 Score=31.93 Aligned_cols=129 Identities=18% Similarity=0.135 Sum_probs=71.2
Q ss_pred HHHHHHHHcCCCeee--CcCCcCC-------CChhHHHHHHHHhc---CCCCCEEEEeccCcccCCCC---------Ccc
Q 040066 46 SIIKHAFDQGITFFD--TADVYGP-------NNANELLVGKALKQ---LPREKVQLATKFGIVKFDMS---------DVV 104 (202)
Q Consensus 46 ~~l~~A~~~Gi~~~D--tA~~Yg~-------~g~~e~~lg~~l~~---~~r~~~~i~tK~~~~~~~~~---------~~~ 104 (202)
+-++...+.|+..+= ||.+|-. .|.-|.++..+-+. -.+.+++|++=++-.....+ ...
T Consensus 106 e~f~~l~~~GltmYGQMTAGsw~YIG~QGIvqGTyeT~~~aark~~g~~L~Gk~~lTaGLGGMgGAQplA~~m~g~v~l~ 185 (546)
T PF01175_consen 106 EHFERLEALGLTMYGQMTAGSWIYIGPQGIVQGTYETFLNAARKHFGGDLAGKLFLTAGLGGMGGAQPLAATMAGGVGLI 185 (546)
T ss_dssp HHHHHHHHTT---B-TTTTTTT---TTHHHHHHHHHHHHHHHHHHSTTS-TT-EEEEE--STTCCHHHHHHHHTT-EEEE
T ss_pred HHHHHHHhccchhhccccccceEEEcccceeehhhHHHHHHHHHhcCCCCcceEEEEecccccccchHHHHHhcCceEEE
Confidence 346777788888765 6655544 14444444333222 23678999988875533211 000
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC-CCeeE-
Q 040066 105 VKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPVTA- 182 (202)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~~~~~- 182 (202)
...++ .+.-+|+.+.|+|.+. .++++.++..++.+++|+..+||+-..-.+.++++.+. ..|++
T Consensus 186 vEvd~-------~ri~kR~~~g~ld~~~-------~~ldea~~~~~ea~~~~~~~SIg~~GN~ad~~~~l~~~~i~pDl~ 251 (546)
T PF01175_consen 186 VEVDP-------SRIEKRLEQGYLDEVT-------DDLDEALARAKEARAKKEPLSIGLLGNAADLWEELVERGIIPDLV 251 (546)
T ss_dssp EES-H-------HHHHHHHHTTSSSEEE-------SSHHHHHHHHHHHHHTT--EEEEEES-HHHHHHHHHHTT---SEE
T ss_pred EEECH-------HHHHHHHhCCCeeEEc-------CCHHHHHHHHHHhhccCCeeEEEEeccHHHHHHHHHHcCCCCCcc
Confidence 11222 3445677788998854 44889999999999999999999999888888888765 34444
Q ss_pred -EcccCC
Q 040066 183 -LQMEWS 188 (202)
Q Consensus 183 -~q~~~n 188 (202)
=|..+|
T Consensus 252 tDQTS~H 258 (546)
T PF01175_consen 252 TDQTSAH 258 (546)
T ss_dssp ---SSTT
T ss_pred cCCCccc
Confidence 466654
No 55
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=64.15 E-value=92 Score=26.61 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=8.9
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 040066 40 PVEVGISIIKHAFDQGIT 57 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~ 57 (202)
+.+++.+.++.+.+.|+.
T Consensus 133 ~~~~~~~ai~~l~~~g~~ 150 (374)
T PRK05799 133 TFEEFLENYKLARKLGFN 150 (374)
T ss_pred CHHHHHHHHHHHHHcCCC
Confidence 344445555555555543
No 56
>PRK00208 thiG thiazole synthase; Reviewed
Probab=62.96 E-value=83 Score=25.69 Aligned_cols=70 Identities=19% Similarity=0.156 Sum_probs=51.4
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 177 (202)
.+.+...+..+-..+.++++.|=|=.+.++... .++.+++++.++|.++|.+ .+=+++-++...+++.+.
T Consensus 73 ~ta~eAv~~a~lare~~~~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~-vlpyc~~d~~~ak~l~~~ 143 (250)
T PRK00208 73 RTAEEAVRTARLAREALGTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFV-VLPYCTDDPVLAKRLEEA 143 (250)
T ss_pred CCHHHHHHHHHHHHHHhCCCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHc
Confidence 356666666777778889888877777665543 5578999999999999986 444677777766666554
No 57
>COG1801 Uncharacterized conserved protein [Function unknown]
Probab=61.46 E-value=91 Score=25.62 Aligned_cols=109 Identities=8% Similarity=-0.024 Sum_probs=63.4
Q ss_pred ceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeC-cCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCC
Q 040066 23 KLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDT-ADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMS 101 (202)
Q Consensus 23 ~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~Dt-A~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~ 101 (202)
.||.+.|......+...++....+-.-+.+....|.++. +..|.. .+++.+-+|.++ -.+++..+-|+.-.-.
T Consensus 4 ~IG~sGW~~~~w~~~~yp~~~~~~~~L~~y~~~f~~VEiN~TFYa~--p~~~t~~~W~~~-~p~~FrFsvK~~~~iT--- 77 (263)
T COG1801 4 YIGTSGWSYPDWEGLFYPEGLKKKEFLAYYASHFNTVEINSTFYAP--PSPETVLRWAEE-TPDDFRFSVKAPRAIT--- 77 (263)
T ss_pred EEeecCCCcccccccccCcccchhhHHHHHhccCCEEEECCcccCC--CCHHHHHHHHHh-CCCCeEEEEEeccccc---
Confidence 456666665432233233333323233445556777663 235663 478888889886 4678999999863221
Q ss_pred CcccCCC--HHHHHHHHHHHHhHcCCCcccEEEeecCCCC
Q 040066 102 DVVVKGT--PEYVRACCEASLKRLDVEYIDLYYQHRVDTT 139 (202)
Q Consensus 102 ~~~~~~~--~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~ 139 (202)
+ ...+. -..+.+.+.+.++.|| +++..+++..|..-
T Consensus 78 H-~~~l~~~~~~~~~~~~~~~~~L~-~klg~il~Q~Ppsf 115 (263)
T COG1801 78 H-QRRLKECDFELWEFFLEPLAPLG-ERLGPILFQLPPSF 115 (263)
T ss_pred c-hhhhccchHHHHHHHHHHHHhhh-cccceEEEecCCcc
Confidence 1 00111 2345555666666777 68999999998654
No 58
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=60.95 E-value=61 Score=25.15 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDT 61 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dt 61 (202)
.|++++.++++.+++.|+...|.
T Consensus 8 ~D~~~~~~~v~~~l~~g~~~~~i 30 (201)
T cd02070 8 GDEEETVELVKKALEAGIDPQDI 30 (201)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHH
Confidence 37788899999999998766554
No 59
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=60.15 E-value=1e+02 Score=25.90 Aligned_cols=135 Identities=12% Similarity=0.039 Sum_probs=73.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCC----------cCCC-ChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCC
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADV----------YGPN-NANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKG 107 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~----------Yg~~-g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 107 (202)
+.++..++.+.+.+.|+..||.=-. +|.+ ...-+.+.+.++... .-++-|+.|+......
T Consensus 75 ~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~-------- 146 (321)
T PRK10415 75 DPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAP-------- 146 (321)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccccC--------
Confidence 5677777777778899999993322 2210 001222333332210 1133466665321110
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCeeEEc
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPI--EDTMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~~q 184 (202)
+..... .+-+.++..|. |.+.+|........ ..-|+.+.++++.=.|.-||... ++++.++++++....+.+|
T Consensus 147 ~~~~~~-~~a~~le~~G~---d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~~iPVI~nGgI~s~~da~~~l~~~gadgVm 222 (321)
T PRK10415 147 EHRNCV-EIAQLAEDCGI---QALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPVIANGDITDPLKARAVLDYTGADALM 222 (321)
T ss_pred CcchHH-HHHHHHHHhCC---CEEEEecCccccccCCCcChHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHhccCCCEEE
Confidence 111111 23344667774 66677865422111 12477778888876788888888 6788888888766666666
Q ss_pred cc
Q 040066 185 ME 186 (202)
Q Consensus 185 ~~ 186 (202)
+-
T Consensus 223 iG 224 (321)
T PRK10415 223 IG 224 (321)
T ss_pred EC
Confidence 43
No 60
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=59.88 E-value=59 Score=25.03 Aligned_cols=106 Identities=10% Similarity=0.042 Sum_probs=62.6
Q ss_pred HHHHHH--HcCCCeeeCcCCcCC------CChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCC--cccCCCHHHHHHHH
Q 040066 47 IIKHAF--DQGITFFDTADVYGP------NNANELLVGKALKQLPREKVQLATKFGIVKFDMSD--VVVKGTPEYVRACC 116 (202)
Q Consensus 47 ~l~~A~--~~Gi~~~DtA~~Yg~------~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~--~~~~~~~~~i~~~~ 116 (202)
..++|. ..+|-++||-..--. -|+.+..+-..|.+. |-++.|.++--..+..++. .+....+..+++-+
T Consensus 70 ~~d~av~~a~~v~fiDTD~itT~~~~~~y~gr~~P~~~~~i~~~-r~DL~lLl~p~t~wvaDG~R~~~~~~~R~~F~~~l 148 (187)
T COG3172 70 YEDAAVRYANKVAFIDTDFLTTQAFCKKYEGREHPFLQALIAEY-RFDLTLLLEPNTPWVADGLRSLGSSVQRQEFQNLL 148 (187)
T ss_pred HHHHHHhCCCceEEEeccHHHHHHHHHHHcccCCchHHHHHhhc-ccceEEEcCCCCceeCCCccccccHhHHHHHHHHH
Confidence 344444 469999998653211 033344444555543 5566665554322222221 11223567788889
Q ss_pred HHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 040066 117 EASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEG 156 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (202)
++.|++-+..| +-+..++.........++.+++...+
T Consensus 149 ~~~L~~~~~~~---v~i~~~~y~eR~~~~~~aV~ell~~~ 185 (187)
T COG3172 149 EQMLEENNIPF---VVIEGEDYLERYLQAVEAVEELLGEK 185 (187)
T ss_pred HHHHHHhCCcE---EEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 99999888666 44466655555678888888888765
No 61
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=58.57 E-value=37 Score=26.88 Aligned_cols=100 Identities=18% Similarity=0.192 Sum_probs=51.5
Q ss_pred CHHHHHHHHHHHHHc-CCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHH
Q 040066 40 PVEVGISIIKHAFDQ-GITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEA 118 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (202)
..+++..+.+...+. |+-|...++-|=. -+...+..+..+. .++++..... +. +.+.+
T Consensus 11 ~~eda~~a~~~gad~iG~If~~~SpR~Vs----~~~a~~i~~~v~~-----~~~VgVf~n~--------~~----~~i~~ 69 (208)
T COG0135 11 RLEDAKAAAKAGADYIGFIFVPKSPRYVS----PEQAREIASAVPK-----VKVVGVFVNE--------SI----EEILE 69 (208)
T ss_pred CHHHHHHHHHcCCCEEEEEEcCCCCCcCC----HHHHHHHHHhCCC-----CCEEEEECCC--------CH----HHHHH
Confidence 345655555553443 4445555666663 4444555544432 1133332221 22 33445
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
.++.++ +|++|||...+. +..+.+.+...-..++++.++.-.
T Consensus 70 i~~~~~---ld~VQlHG~e~~----~~~~~l~~~~~~~v~kai~v~~~~ 111 (208)
T COG0135 70 IAEELG---LDAVQLHGDEDP----EYIDQLKEELGVPVIKAISVSEEG 111 (208)
T ss_pred HHHhcC---CCEEEECCCCCH----HHHHHHHhhcCCceEEEEEeCCcc
Confidence 555555 899999987432 233333322234589999998753
No 62
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=57.48 E-value=76 Score=25.14 Aligned_cols=54 Identities=11% Similarity=0.107 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCc
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGI 95 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~ 95 (202)
.+.+++.++.+..++.|++.++.+-.... ..+.+.+.-++.|+--+-..|+...
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEitl~~~~---~~~~I~~l~~~~p~~~IGAGTVl~~ 77 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVTLRTPA---ALEAIRLIAKEVPEALIGAGTVLNP 77 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcc---HHHHHHHHHHHCCCCEEEEeeccCH
Confidence 36799999999999999999998854443 5666655555555433446666653
No 63
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=57.40 E-value=1.2e+02 Score=25.95 Aligned_cols=151 Identities=12% Similarity=0.051 Sum_probs=72.3
Q ss_pred CCCCHHHHHHHH-------HHHHHcCCCeeeCcCCcCC-----------------CChhHH---HHHHHHhc----CCCC
Q 040066 37 DPVPVEVGISII-------KHAFDQGITFFDTADVYGP-----------------NNANEL---LVGKALKQ----LPRE 85 (202)
Q Consensus 37 ~~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e~---~lg~~l~~----~~r~ 85 (202)
.+++.++..+++ +.|.++|+..++--..+|. +|.-|. ++-+.++. .+.
T Consensus 147 ~~mt~~eI~~ii~~f~~AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~- 225 (362)
T PRK10605 147 RALELEEIPGIVNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGA- 225 (362)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCC-
Confidence 346666655444 4667899999985433332 144442 22222222 332
Q ss_pred CEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 86 KVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+ +|..|+.+...... .....+.+.....+-+.|+..|+|+|++-.-++... ..+.. ...+++++.=.+.-+++..
T Consensus 226 ~-~igvRis~~~~~~~-~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~-~~~~~--~~~~~ik~~~~~pv~~~G~ 300 (362)
T PRK10605 226 D-RIGIRISPLGTFNN-VDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGG-EPYSD--AFREKVRARFHGVIIGAGA 300 (362)
T ss_pred C-eEEEEECCcccccc-CCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCC-ccccH--HHHHHHHHHCCCCEEEeCC
Confidence 3 48889876421100 000123333223444556777888887643221111 11111 1112233221223455556
Q ss_pred CCHHHHHHHhcCCCeeEEc-ccCCccccc
Q 040066 166 ASPDTIRRAHAVHPVTALQ-MEWSLWTRE 193 (202)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~q-~~~n~~~~~ 193 (202)
++++..+++++....+.+- .+--+.|++
T Consensus 301 ~~~~~ae~~i~~G~~D~V~~gR~~iadPd 329 (362)
T PRK10605 301 YTAEKAETLIGKGLIDAVAFGRDYIANPD 329 (362)
T ss_pred CCHHHHHHHHHcCCCCEEEECHHhhhCcc
Confidence 7888888888776555543 333444443
No 64
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=57.02 E-value=1.2e+02 Score=25.74 Aligned_cols=26 Identities=12% Similarity=0.151 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
...+.++..++++...++||..|+.+
T Consensus 20 ~~f~~~~~~~i~~~L~~aGv~~IEvg 45 (337)
T PRK08195 20 HQYTLEQVRAIARALDAAGVPVIEVT 45 (337)
T ss_pred CccCHHHHHHHHHHHHHcCCCEEEee
Confidence 34577999999999999999999994
No 65
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=56.83 E-value=71 Score=28.14 Aligned_cols=105 Identities=16% Similarity=0.277 Sum_probs=70.7
Q ss_pred HHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCC
Q 040066 46 SIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDV 125 (202)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 125 (202)
..|.+++++|- +-..=.||+||.-...+.+.+...-...+.-.+-+. .+...+++.++++.+.++.
T Consensus 37 ~~lrr~v~~~~--l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------------~gvkdlr~i~e~a~~~~~~ 102 (436)
T COG2256 37 KPLRRAVEAGH--LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------------SGVKDLREIIEEARKNRLL 102 (436)
T ss_pred chHHHHHhcCC--CceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------------ccHHHHHHHHHHHHHHHhc
Confidence 46788888653 223347999888888899988763222332222221 1467899999999877765
Q ss_pred CcccEEEe---ecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 040066 126 EYIDLYYQ---HRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPD 169 (202)
Q Consensus 126 d~iDl~~l---h~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 169 (202)
.+==++++ |+.+ ...-++|--.++.|.|-.||-++-||.
T Consensus 103 gr~tiLflDEIHRfn-----K~QQD~lLp~vE~G~iilIGATTENPs 144 (436)
T COG2256 103 GRRTILFLDEIHRFN-----KAQQDALLPHVENGTIILIGATTENPS 144 (436)
T ss_pred CCceEEEEehhhhcC-----hhhhhhhhhhhcCCeEEEEeccCCCCC
Confidence 44445555 3332 256678888999999999999998764
No 66
>PRK00730 rnpA ribonuclease P; Reviewed
Probab=55.80 E-value=81 Score=23.29 Aligned_cols=63 Identities=6% Similarity=0.164 Sum_probs=43.5
Q ss_pred CCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHc--CCCcccEEEeecCCCCCCHHHHHHHHHHHHHc
Q 040066 83 PREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRL--DVEYIDLYYQHRVDTTIPIEDTMGELKKLVEE 155 (202)
Q Consensus 83 ~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L--g~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (202)
+|=.+.|+-|++.. ..+..|++.+.++++.. .....|++++.......++.++.+.|.++.++
T Consensus 46 ~RlG~sVSKKvg~A----------V~RNRiKR~lREafR~~~~~l~g~DiVviaR~~~~~~f~~L~~~l~~~~~~ 110 (138)
T PRK00730 46 CKVGITVSKKFGKA----------HQRNRFKRIVREAFRHVRHNLPGCQIVVSPKGNSQPDFLKLLQDFLQQIPE 110 (138)
T ss_pred ceEEEEEecccccc----------hhHHHHHHHHHHHHHHhhcccCCceEEEEeccccCCCHHHHHHHHHHHHHH
Confidence 35566777776532 24667777777777665 33578999999887667777777777766654
No 67
>COG0218 Predicted GTPase [General function prediction only]
Probab=55.48 E-value=1e+02 Score=24.31 Aligned_cols=101 Identities=12% Similarity=-0.021 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHH------cCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 41 VEVGISIIKHAFD------QGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 41 ~~~~~~~l~~A~~------~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
.++..+++...+. ..+-++|.-..-- ..++.+=+|+......=+++.||.- ++......+
T Consensus 90 ~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~---~~D~em~~~l~~~~i~~~vv~tK~D-----------Ki~~~~~~k 155 (200)
T COG0218 90 KEKWKKLIEEYLEKRANLKGVVLLIDARHPPK---DLDREMIEFLLELGIPVIVVLTKAD-----------KLKKSERNK 155 (200)
T ss_pred HHHHHHHHHHHHhhchhheEEEEEEECCCCCc---HHHHHHHHHHHHcCCCeEEEEEccc-----------cCChhHHHH
Confidence 3444555555443 4566777654333 3677888888876677788999974 335566777
Q ss_pred HHHHHHhHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHc
Q 040066 115 CCEASLKRLDVEYIDL--YYQHRVDTTIPIEDTMGELKKLVEE 155 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~ 155 (202)
.+....+.|+.+..|- +.+........++++++.+.+....
T Consensus 156 ~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 156 QLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred HHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 7888888888776665 4444444456688888888776543
No 68
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=54.78 E-value=1.4e+02 Score=25.54 Aligned_cols=92 Identities=14% Similarity=0.163 Sum_probs=47.9
Q ss_pred CCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC---CC--HHHHHHHHHHHHHcCCcc
Q 040066 85 EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT---IP--IEDTMGELKKLVEEGKIK 159 (202)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~--~~~~~~~l~~l~~~G~vr 159 (202)
.++.|..|+.+.....++ .+.+.. ..+-+.|+..|+|+|++-.- +.... .. ....++.+.+.+. +.+.
T Consensus 214 ~~~~v~~R~s~~~~~~~g----~~~ee~-~~i~~~L~~~GvD~I~Vs~g-~~~~~~~~~~~~~~~~~~~ik~~~~-~~iP 286 (353)
T cd04735 214 KDFILGYRFSPEEPEEPG----IRMEDT-LALVDKLADKGLDYLHISLW-DFDRKSRRGRDDNQTIMELVKERIA-GRLP 286 (353)
T ss_pred CCceEEEEECcccccCCC----CCHHHH-HHHHHHHHHcCCCEEEeccC-ccccccccCCcchHHHHHHHHHHhC-CCCC
Confidence 477888888764322111 233333 23445566778776665211 11110 11 1223334443332 4567
Q ss_pred EEEecCC-CHHHHHHHhcCCCeeEEc
Q 040066 160 YIGLSEA-SPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 160 ~iGvsn~-~~~~l~~~~~~~~~~~~q 184 (202)
-|++... +++..+++++. ..+.+.
T Consensus 287 Vi~~Ggi~t~e~ae~~l~~-gaD~V~ 311 (353)
T cd04735 287 LIAVGSINTPDDALEALET-GADLVA 311 (353)
T ss_pred EEEECCCCCHHHHHHHHHc-CCChHH
Confidence 7888885 78888888766 344443
No 69
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=54.43 E-value=1.1e+02 Score=24.28 Aligned_cols=135 Identities=16% Similarity=0.136 Sum_probs=80.4
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
+...+++..++.+.|.+.|+.-+-..+.|- ....+.|+ ..++-|+|-++++.... +.+.-...+
T Consensus 13 p~~t~~~i~~lc~~A~~~~~~avcv~p~~v------~~a~~~l~---~~~v~v~tVigFP~G~~-------~~~~K~~E~ 76 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTYKFAAVCVNPSYV------PLAKELLK---GTEVRICTVVGFPLGAS-------TTDVKLYET 76 (211)
T ss_pred CCCCHHHHHHHHHHHHhhCCcEEEeCHHHH------HHHHHHcC---CCCCeEEEEeCCCCCCC-------cHHHHHHHH
Confidence 445789999999999999998888765433 33344443 34688888888765432 222223334
Q ss_pred HHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CC-ccEE-EecCCCHHHHHHHhcC---CCeeEEccc--C
Q 040066 117 EASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEE--GK-IKYI-GLSEASPDTIRRAHAV---HPVTALQME--W 187 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~-vr~i-Gvsn~~~~~l~~~~~~---~~~~~~q~~--~ 187 (202)
++.++ +|.|-||+++--..-...+.+...+.+.+.++. |. ++-| -.+-.+.+++..+.+. ...+++... |
T Consensus 77 ~~Av~-~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf 155 (211)
T TIGR00126 77 KEAIK-YGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGF 155 (211)
T ss_pred HHHHH-cCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCC
Confidence 44444 699999998764432234456666666666653 54 2322 1222344565554332 456777766 5
Q ss_pred C
Q 040066 188 S 188 (202)
Q Consensus 188 n 188 (202)
.
T Consensus 156 ~ 156 (211)
T TIGR00126 156 G 156 (211)
T ss_pred C
Confidence 5
No 70
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=54.39 E-value=1.4e+02 Score=25.44 Aligned_cols=142 Identities=11% Similarity=0.048 Sum_probs=72.8
Q ss_pred CCCCHHHHHHH-------HHHHHHcCCCeeeCcCCcCC-----------------CChhH---HHHHHHH---hc-CCCC
Q 040066 37 DPVPVEVGISI-------IKHAFDQGITFFDTADVYGP-----------------NNANE---LLVGKAL---KQ-LPRE 85 (202)
Q Consensus 37 ~~~~~~~~~~~-------l~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e---~~lg~~l---~~-~~r~ 85 (202)
..++.++..++ .+.|.++|+..++--..+|. +|.-| +++-+.+ ++ .+.
T Consensus 140 ~~mt~~eI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~- 218 (338)
T cd02933 140 RALTTEEIPGIVADFRQAARNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGA- 218 (338)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCC-
Confidence 34555555443 44667799999996444321 13333 1222222 22 333
Q ss_pred CEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 86 KVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+ +|..|+.......+. ....+.+... .+-+.|+..|+|+|++- |.......-.-.+....++++.=.+.-+++.+
T Consensus 219 d-~v~vRis~~~~~~~~-~~~~~~ee~~-~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~ik~~~~ipvi~~G~ 293 (338)
T cd02933 219 D-RVGIRLSPFGTFNDM-GDSDPEATFS-YLAKELNKRGLAYLHLV--EPRVAGNPEDQPPDFLDFLRKAFKGPLIAAGG 293 (338)
T ss_pred C-ceEEEECccccCCCC-CCCCCHHHHH-HHHHHHHHcCCcEEEEe--cCCCCCcccccchHHHHHHHHHcCCCEEEECC
Confidence 3 488888654221110 0112333332 35556667787776652 22111111112234444445544577788888
Q ss_pred CCHHHHHHHhcCCCeeEEc
Q 040066 166 ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~q 184 (202)
++++..+++++....+.+.
T Consensus 294 i~~~~a~~~l~~g~~D~V~ 312 (338)
T cd02933 294 YDAESAEAALADGKADLVA 312 (338)
T ss_pred CCHHHHHHHHHcCCCCEEE
Confidence 8888888888877666654
No 71
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.25 E-value=1.5e+02 Score=28.01 Aligned_cols=103 Identities=11% Similarity=0.112 Sum_probs=68.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC-CChhHHHHHHHHhcCCCCCEEEEe--ccCcccCCCCC---ccc--CCC
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVYGP-NNANELLVGKALKQLPREKVQLAT--KFGIVKFDMSD---VVV--KGT 108 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~~~r~~~~i~t--K~~~~~~~~~~---~~~--~~~ 108 (202)
.+.|+++.++.++...+.|+.-|-.+..+.. +-..|..+++.+++.- .++.|++ ++++.....+. ... .+.
T Consensus 134 ~~lD~~~v~~~~~~l~~~gv~siAVs~~~S~~NP~HE~~v~eiire~~-~~i~V~~shev~p~~~~~eR~~TavlnA~L~ 212 (674)
T COG0145 134 KPLDEEEVREAAAALKAAGVEAIAVSSLFSYRNPEHELRVAEIIREIG-PDIPVSLSHEVSPEIGEYERANTAVLNAYLS 212 (674)
T ss_pred CcCCHHHHHHHHHHHHhCCCcEEEEEEecccCCcHHHHHHHHHHHHhc-CCceEEechhcchhcCcccchhhheeeeeeh
Confidence 3478899999999999999999987653333 2557999999999854 5666666 88764332211 000 011
Q ss_pred --HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC
Q 040066 109 --PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP 141 (202)
Q Consensus 109 --~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~ 141 (202)
.....++++..|+.-|.+ ..++++.+.....+
T Consensus 213 pi~~~yl~~v~~~l~~~g~~-~~l~~m~sdGgl~~ 246 (674)
T COG0145 213 PILRRYLEAVKDALKERGIK-ARLMVMQSDGGLVS 246 (674)
T ss_pred HHHHHHHHHHHHHHHhcCCC-ceeEEEecCCcccc
Confidence 234566777777777755 67888877544444
No 72
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=53.87 E-value=86 Score=27.73 Aligned_cols=59 Identities=22% Similarity=0.278 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeec-CC----------C-CCCHH---HHH-HHHHHHHHcCCccEEEecCCCH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHR-VD----------T-TIPIE---DTM-GELKKLVEEGKIKYIGLSEASP 168 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~----------~-~~~~~---~~~-~~l~~l~~~G~vr~iGvsn~~~ 168 (202)
+.+.+.+.++..+ .++.+++.++.+-. |. . ..+.+ +.+ .+.+.|...|.. .+++|||.-
T Consensus 216 t~e~~~~~l~~~~-~l~~~~i~~y~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~-~ye~s~far 290 (453)
T PRK09249 216 TPESFARTLEKVL-ELRPDRLAVFNYAHVPWLFKAQRKIDEADLPSPEEKLAILQQTIETLTEAGYQ-YIGMDHFAL 290 (453)
T ss_pred CHHHHHHHHHHHH-hcCCCEEEEccCccchhhhhHhcCCCcccCCCHHHHHHHHHHHHHHHHHCCCE-EEeccceeC
Confidence 5666777666665 37888888876531 10 0 01112 223 334455666765 588888774
No 73
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=52.28 E-value=1.5e+02 Score=25.24 Aligned_cols=92 Identities=8% Similarity=0.055 Sum_probs=50.1
Q ss_pred CCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcC-CCcccEEEeecCCCC-----------CCH--HHHHHHHH
Q 040066 85 EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLD-VEYIDLYYQHRVDTT-----------IPI--EDTMGELK 150 (202)
Q Consensus 85 ~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~~-----------~~~--~~~~~~l~ 150 (202)
.++.|..|+++.....++ .+.+... .+-+.|+..| +|+|++ |..... ... .-.|+...
T Consensus 207 ~~~~v~iRl~~~~~~~~G----~~~~e~~-~~~~~l~~~G~vd~i~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (343)
T cd04734 207 PDFIVGIRISGDEDTEGG----LSPDEAL-EIAARLAAEGLIDYVNV---SAGSYYTLLGLAHVVPSMGMPPGPFLPLAA 278 (343)
T ss_pred CCCeEEEEeehhhccCCC----CCHHHHH-HHHHHHHhcCCCCEEEe---CCCCCCcccccccccCCCCCCcchhHHHHH
Confidence 567788888764322111 2333332 3445556666 555554 321110 001 11355555
Q ss_pred HHHHcCCccEEEecC-CCHHHHHHHhcCCCeeEEc
Q 040066 151 KLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 151 ~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~~q 184 (202)
.+++.=.+.-+++.+ ++++.++++++....+.+.
T Consensus 279 ~ik~~~~ipvi~~G~i~~~~~~~~~l~~~~~D~V~ 313 (343)
T cd04734 279 RIKQAVDLPVFHAGRIRDPAEAEQALAAGHADMVG 313 (343)
T ss_pred HHHHHcCCCEEeeCCCCCHHHHHHHHHcCCCCeee
Confidence 566554567788887 5788899988876655554
No 74
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=51.71 E-value=1.5e+02 Score=25.04 Aligned_cols=141 Identities=16% Similarity=0.150 Sum_probs=74.8
Q ss_pred CCCCHHHHHH-------HHHHHHHcCCCeeeCcCCcCC-----------------CChhHH------HHHHHHhcCCCCC
Q 040066 37 DPVPVEVGIS-------IIKHAFDQGITFFDTADVYGP-----------------NNANEL------LVGKALKQLPREK 86 (202)
Q Consensus 37 ~~~~~~~~~~-------~l~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e~------~lg~~l~~~~r~~ 86 (202)
..+++++..+ ..+.|.++|++.|+.-...|. +|.-|. .+=+++++.-.++
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d 221 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPED 221 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCC
Confidence 3456655543 445667899999986432210 122221 1222233212346
Q ss_pred EEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCC--CC--CCH--HHHHHHHHHHHHcCCccE
Q 040066 87 VQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVD--TT--IPI--EDTMGELKKLVEEGKIKY 160 (202)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~--~~--~~~--~~~~~~l~~l~~~G~vr~ 160 (202)
+.|.-|+.+......+ .+.+... .+-+.|+..|+|+|++ |... .. .+. ...+..+.++++.=.+.-
T Consensus 222 ~~v~vri~~~~~~~~g----~~~~e~~-~ia~~Le~~gvd~iev---~~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV 293 (336)
T cd02932 222 KPLFVRISATDWVEGG----WDLEDSV-ELAKALKELGVDLIDV---SSGGNSPAQKIPVGPGYQVPFAERIRQEAGIPV 293 (336)
T ss_pred ceEEEEEcccccCCCC----CCHHHHH-HHHHHHHHcCCCEEEE---CCCCCCcccccCCCccccHHHHHHHHhhCCCCE
Confidence 7788888753221111 1333332 2334566777666553 4211 00 111 122455666776656777
Q ss_pred EEecC-CCHHHHHHHhcCCCeeEEcc
Q 040066 161 IGLSE-ASPDTIRRAHAVHPVTALQM 185 (202)
Q Consensus 161 iGvsn-~~~~~l~~~~~~~~~~~~q~ 185 (202)
++..+ ++++..+++++....+.+++
T Consensus 294 i~~G~i~t~~~a~~~l~~g~aD~V~~ 319 (336)
T cd02932 294 IAVGLITDPEQAEAILESGRADLVAL 319 (336)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCeehh
Confidence 88888 47888999988877777764
No 75
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=51.33 E-value=2.2e+02 Score=27.06 Aligned_cols=140 Identities=11% Similarity=0.081 Sum_probs=70.7
Q ss_pred CCCCHHHHHH-------HHHHHHHcCCCeeeCcCCcCC-----------------CChhH---HHHH---HHHhcCCCCC
Q 040066 37 DPVPVEVGIS-------IIKHAFDQGITFFDTADVYGP-----------------NNANE---LLVG---KALKQLPREK 86 (202)
Q Consensus 37 ~~~~~~~~~~-------~l~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e---~~lg---~~l~~~~r~~ 86 (202)
.+++.++..+ ..+.|.++|+..||--..+|. +|.-| +++- +++++.-.++
T Consensus 539 ~~mt~~eI~~~i~~f~~aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~ 618 (765)
T PRK08255 539 REMTRADMDRVRDDFVAAARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAE 618 (765)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCC
Confidence 3456666544 345667899999986333221 13333 1222 2233222347
Q ss_pred EEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCC----CHH--HHHHHHHHHHHcCCccE
Q 040066 87 VQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTI----PIE--DTMGELKKLVEEGKIKY 160 (202)
Q Consensus 87 ~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~----~~~--~~~~~l~~l~~~G~vr~ 160 (202)
+.|..|+.......++ .+.+... .+-+.|+..|+|+||+ |...... ... -......++++.=.+.-
T Consensus 619 ~~v~~ri~~~~~~~~g----~~~~~~~-~~~~~l~~~g~d~i~v---s~g~~~~~~~~~~~~~~~~~~~~~ik~~~~~pv 690 (765)
T PRK08255 619 KPMSVRISAHDWVEGG----NTPDDAV-EIARAFKAAGADLIDV---SSGQVSKDEKPVYGRMYQTPFADRIRNEAGIAT 690 (765)
T ss_pred CeeEEEEccccccCCC----CCHHHHH-HHHHHHHhcCCcEEEe---CCCCCCcCCCCCcCccccHHHHHHHHHHcCCEE
Confidence 7888888754322221 2333332 3445567788766665 4321100 000 01122244555445666
Q ss_pred EEecC-CCHHHHHHHhcCCCeeEEc
Q 040066 161 IGLSE-ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 161 iGvsn-~~~~~l~~~~~~~~~~~~q 184 (202)
+++.+ .+++..+++++....+.+.
T Consensus 691 ~~~G~i~~~~~a~~~l~~g~~D~v~ 715 (765)
T PRK08255 691 IAVGAISEADHVNSIIAAGRADLCA 715 (765)
T ss_pred EEeCCCCCHHHHHHHHHcCCcceee
Confidence 77777 4677788887766555543
No 76
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=51.14 E-value=1.5e+02 Score=24.92 Aligned_cols=135 Identities=13% Similarity=0.080 Sum_probs=74.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCC-ChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPN-NANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYVRAC 115 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~-g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (202)
..+.++..++++.+.+.|+..|--+..-+-- -.-..++.. +++.+ ..++.|.|-. ..+.+
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~-i~~~~~l~~i~itTNG----------------~ll~~- 105 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVAR-LGKLPGLEELSLTTNG----------------SRLAR- 105 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHH-HHhCCCCceEEEEeCh----------------hHHHH-
Confidence 4678889999999999999988755311110 011222222 23222 1234444332 11222
Q ss_pred HHHHHhHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHhc---CCCe
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDTT--------IPIEDTMGELKKLVEEGK----IKYIGLSEASPDTIRRAHA---VHPV 180 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----vr~iGvsn~~~~~l~~~~~---~~~~ 180 (202)
.-+.|...|++++- +.++..++. ..++.+++.++.+++.|. +..+.+...+.+++.++++ ...+
T Consensus 106 ~~~~L~~aGl~~v~-ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~~Gi~~v~in~v~~~g~N~~ei~~~~~~~~~~gi 184 (329)
T PRK13361 106 FAAELADAGLKRLN-ISLDTLRPELFAALTRNGRLERVIAGIDAAKAAGFERIKLNAVILRGQNDDEVLDLVEFCRERGL 184 (329)
T ss_pred HHHHHHHcCCCeEE-EEeccCCHHHhhhhcCCCCHHHHHHHHHHHHHcCCCceEEEEEEECCCCHHHHHHHHHHHHhcCC
Confidence 34556667777665 355555432 236789999999999885 2334444567777666543 2344
Q ss_pred eEEcccCCccc
Q 040066 181 TALQMEWSLWT 191 (202)
Q Consensus 181 ~~~q~~~n~~~ 191 (202)
++.=++|-++.
T Consensus 185 ~~~~ie~mP~g 195 (329)
T PRK13361 185 DIAFIEEMPLG 195 (329)
T ss_pred eEEEEecccCC
Confidence 44444455544
No 77
>TIGR00035 asp_race aspartate racemase.
Probab=50.90 E-value=99 Score=24.47 Aligned_cols=62 Identities=18% Similarity=0.105 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCC------------CHHHHHHHHHHHHHcCCccEEEecCCCHHH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTI------------PIEDTMGELKKLVEEGKIKYIGLSEASPDT 170 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~------------~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~ 170 (202)
+.+..++-++..-.+.+.++++.+.+++|+-.. ....+.+.++.|.+.| +..|-+..++...
T Consensus 15 t~~~~~~i~~~~~a~~d~~~~~~i~~~~~~~~dr~~~~~~~~~~~~~~~l~~~~~~L~~~g-~d~iviaCNTah~ 88 (229)
T TIGR00035 15 TAELFRRINEKTKAKRDQEHPAEVLFNNPNIPDRTAYILGRGEDRPRPILIDIAVKLENAG-ADFIIMPCNTAHK 88 (229)
T ss_pred HHHHHHHHHHHhHHhcCCCCCceeeeeCCCHHHHHHHHhcCCcchHHHHHHHHHHHHHHcC-CCEEEECCccHHH
Confidence 456666666777778899999999999984311 1234566666666654 7888888876554
No 78
>PRK09061 D-glutamate deacylase; Validated
Probab=50.38 E-value=1.9e+02 Score=26.02 Aligned_cols=115 Identities=11% Similarity=0.045 Sum_probs=62.7
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHc
Q 040066 44 GISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRL 123 (202)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L 123 (202)
..++++.|++.|...|=+...|.. +.+...+-+.++...+.+..|....-.... .+.....+++++.++..
T Consensus 171 m~~ll~~al~~Ga~gis~~~~y~p-~~~~~eL~~l~~~A~~~g~~v~~H~e~~~~--------~~~~~e~~av~~~i~lA 241 (509)
T PRK09061 171 ILELLEQGLDEGALGIGIGAGYAP-GTGHKEYLELARLAARAGVPTYTHVRYLSN--------VDPRSSVDAYQELIAAA 241 (509)
T ss_pred HHHHHHHHHHCCCCEEecCCccCC-CCCHHHHHHHHHHHHHcCCEEEEEecCccc--------CCchhHHHHHHHHHHHH
Confidence 577788899999999977655643 335555555555433334555554422110 01122233444444333
Q ss_pred CCCcccEEEeecCCC-CCCHHHHHHHHHHHHHcCCccEEEecCCC
Q 040066 124 DVEYIDLYYQHRVDT-TIPIEDTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 124 g~d~iDl~~lh~~~~-~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
...-.-+...|--.. ..+..+.++.+++++++|.-=..-++.+.
T Consensus 242 ~~~G~rv~IsHlss~g~~~~~~~le~I~~Ar~~Gi~Vt~e~~P~~ 286 (509)
T PRK09061 242 AETGAHMHICHVNSTSLRDIDRCLALVEKAQAQGLDVTTEAYPYG 286 (509)
T ss_pred HHhCCCEEEEeeccCCcccHHHHHHHHHHHHHcCCcEEEEecCcc
Confidence 222234666676432 23456788999999999864444454443
No 79
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=50.26 E-value=1.4e+02 Score=24.37 Aligned_cols=69 Identities=19% Similarity=0.152 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 177 (202)
+.+...+..+-..+.++++.|=|=.+.++... .+..+++++.++|.++|.+ .+=+++-++...+++.+.
T Consensus 74 ta~eAv~~a~lare~~~~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~-vlpyc~dd~~~ar~l~~~ 143 (248)
T cd04728 74 TAEEAVRTARLAREALGTDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFT-VLPYCTDDPVLAKRLEDA 143 (248)
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEEEecCccccccCHHHHHHHHHHHHHCCCE-EEEEeCCCHHHHHHHHHc
Confidence 55666666777778889988888777766554 4578999999999999986 455677777766666554
No 80
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=50.08 E-value=56 Score=26.10 Aligned_cols=81 Identities=17% Similarity=0.103 Sum_probs=51.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCCHHHHHHHhcCCCeeEEcc
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEG-KIKYIGLSEASPDTIRRAHAVHPVTALQM 185 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~vr~iGvsn~~~~~l~~~~~~~~~~~~q~ 185 (202)
++.+...+ +-+.|..+|+++|.+-..-.++......+.++.++++++.+ .++...++......++.+.+.. ++.+++
T Consensus 16 ~s~e~~~~-i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i 93 (265)
T cd03174 16 FSTEDKLE-IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRI 93 (265)
T ss_pred CCHHHHHH-HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEE
Confidence 34444444 44457788999988876554422222356788888898888 5666677765566677666554 455655
Q ss_pred cCCc
Q 040066 186 EWSL 189 (202)
Q Consensus 186 ~~n~ 189 (202)
.+..
T Consensus 94 ~~~~ 97 (265)
T cd03174 94 FDSA 97 (265)
T ss_pred EEec
Confidence 5544
No 81
>PRK05588 histidinol-phosphatase; Provisional
Probab=50.00 E-value=1.3e+02 Score=24.08 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCC--------hhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHH
Q 040066 42 EVGISIIKHAFDQGITFFDTADVYGPNN--------ANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVR 113 (202)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g--------~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (202)
....+.++.|.+.|+..+ .++|...+. .-+..+ +.++..+..++++.--++.. +. ..
T Consensus 16 ~~~ee~v~~A~~~Gl~~~-~TdH~~~~~~~~~~~~~~~~~y~-~~i~~~~~~~I~~GiE~~~~------------~~-~~ 80 (255)
T PRK05588 16 MKIEEAIKKAKENNLGII-ITEHMDLNLPDKNKFCFDVDSYF-NKYSKYRNNKLLLGIELGME------------KD-LI 80 (255)
T ss_pred cCHHHHHHHHHHcCCCEE-EeCCCCCCCCCccccccCHHHHH-HHHHHHhcCCcceEEEeccc------------CC-CH
Confidence 345688999999999999 887742200 011111 11122222244443333221 11 24
Q ss_pred HHHHHHHhHcCCCcccEEEeecCCCCC----------CHHH----HHHHHHHHHH-cCCccEEE
Q 040066 114 ACCEASLKRLDVEYIDLYYQHRVDTTI----------PIED----TMGELKKLVE-EGKIKYIG 162 (202)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~----------~~~~----~~~~l~~l~~-~G~vr~iG 162 (202)
+.+++.|+....|++ +..+|+.+... +.++ -++.+.++++ .|++..+|
T Consensus 81 ~~~~~~l~~~~~D~v-igSvH~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~v~~~~~~dvlg 143 (255)
T PRK05588 81 EENKELINKYEFDYV-IGSIHLVDKLDLYLDEFYKDKSKEEAYHIYFENMLKCLEKYDFIDSLG 143 (255)
T ss_pred HHHHHHHhhCCCCeE-EEeEEeeCCCcchHHHHhcCCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence 556778887777776 78889854211 2222 3466777776 46443333
No 82
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=49.97 E-value=1.6e+02 Score=25.10 Aligned_cols=114 Identities=22% Similarity=0.264 Sum_probs=67.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHH--------------------HHHHHhcCCCCCEEEEeccCcccC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELL--------------------VGKALKQLPREKVQLATKFGIVKF 98 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~--------------------lg~~l~~~~r~~~~i~tK~~~~~~ 98 (202)
.+.+...++.++|-+.|+-+|=|.-.+.. .+.+ +-...+. ...++++|=..
T Consensus 87 ~p~e~~~~Lke~a~~~Gi~~~SSPfd~~s---vd~l~~~~~~ayKIaS~E~~~~plik~iA~~--~kPiIlSTGma---- 157 (347)
T COG2089 87 TPLEWHAQLKEYARKRGIIFFSSPFDLTA---VDLLESLNPPAYKIASGEINDLPLIKYIAKK--GKPIILSTGMA---- 157 (347)
T ss_pred CCHHHHHHHHHHHHHcCeEEEecCCCHHH---HHHHHhcCCCeEEecCccccChHHHHHHHhc--CCCEEEEcccc----
Confidence 56777889999999999999988766553 2211 1111111 11333333221
Q ss_pred CCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHHH-HHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 040066 99 DMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIED-TMGELKKLVEEGKIKYIGLSEASPDTIRRA 174 (202)
Q Consensus 99 ~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~-~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~ 174 (202)
+-+.|+++++...++=. .|+.++|+.... .++++ -+..|-.|.+.= .--||+|.|+..-+..+
T Consensus 158 ---------~~~ei~~av~~~r~~g~---~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F-n~~vGlSDHT~g~~a~l 222 (347)
T COG2089 158 ---------TIEEIEEAVAILRENGN---PDIALLHCTSAYPAPFEDVNLKAIPKLAEAF-NAIVGLSDHTLGILAPL 222 (347)
T ss_pred ---------cHHHHHHHHHHHHhcCC---CCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-CCccccccCccchhHHH
Confidence 35667777765554433 399999987554 44543 355555555542 33699999997754443
No 83
>PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A.
Probab=49.85 E-value=16 Score=28.42 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=41.5
Q ss_pred HHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCeeEEcccCCc
Q 040066 118 ASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQMEWSL 189 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~~q~~~n~ 189 (202)
..+..+|.||+-+.+. |...-. -..+...++.+.-..+.+||.. -+.+.+.+..+...++++|++-+.
T Consensus 13 ~~~~~~g~d~~Gfi~~--~~S~R~--v~~~~a~~l~~~~~~~~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e 81 (197)
T PF00697_consen 13 RLAAELGADYLGFIFY--PKSPRY--VSPDQARELVSAVPPKIVGVFVNQSPEEILEIVEELGLDVVQLHGDE 81 (197)
T ss_dssp HHHHHHTSSEEEEE----TTCTTB----HHHHHHHHCCSSSSEEEEESSS-HHHHHHHHHHCTESEEEE-SGG
T ss_pred HHHHHcCCCEEeeecC--CCCCCc--cCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHHcCCCEEEECCCC
Confidence 4467789999888643 432211 1233344444443444889877 467778888889999999987665
No 84
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=49.27 E-value=1.7e+02 Score=25.05 Aligned_cols=109 Identities=11% Similarity=0.108 Sum_probs=67.4
Q ss_pred CCCEEEEeccCccc------CCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHc-
Q 040066 84 REKVQLATKFGIVK------FDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHR-VDTTIPIEDTMGELKKLVEE- 155 (202)
Q Consensus 84 r~~~~i~tK~~~~~------~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~- 155 (202)
|.-+.|+|.+++.. .+..+....++.+.|..++....+.++ ..++-+.+-. -++...++.+.++++.+.+.
T Consensus 100 r~t~cvSsqvGC~~~C~FC~tg~~g~~rnlt~~EIv~qv~~~~~~~~-~~~~~IvfmGmGEPlln~~~v~~~i~~l~~~~ 178 (345)
T PRK14457 100 RLTVCVSSQVGCPMACDFCATGKGGLKRSLKAHEIVDQVLTVQEDMQ-RRVSHVVFMGMGEPLLNIDEVLAAIRCLNQDL 178 (345)
T ss_pred CCEEEEeCCCCCCCcCCcCCCCCCCCccccCHHHHHHHHHHHHHHhc-CCCCEEEEEecCccccCHHHHHHHHHHHhccc
Confidence 45567777776432 111122234688999999998887775 3466555555 34445577888999988775
Q ss_pred CC-ccEEEecCCC-HHHHHHHhcCC------CeeEEcccCCccccc
Q 040066 156 GK-IKYIGLSEAS-PDTIRRAHAVH------PVTALQMEWSLWTRE 193 (202)
Q Consensus 156 G~-vr~iGvsn~~-~~~l~~~~~~~------~~~~~q~~~n~~~~~ 193 (202)
|. .|.|=||+.. ...++++.+.. ....+.+.+|..+..
T Consensus 179 ~i~~r~itvST~G~~~~i~~L~~~~~~~~~~~~~~laiSLha~~~e 224 (345)
T PRK14457 179 GIGQRRITVSTVGVPKTIPQLAELAFQRLGRLQFTLAVSLHAPNQK 224 (345)
T ss_pred CCccCceEEECCCchhhHHHHHhhhhhhcccCceEEEEEeCCCCHH
Confidence 43 4567777743 45566665543 233466777766654
No 85
>COG4464 CapC Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=48.83 E-value=1.1e+02 Score=24.64 Aligned_cols=32 Identities=19% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC
Q 040066 36 NDPVPVEVGISIIKHAFDQGITFFDTADVYGP 67 (202)
Q Consensus 36 ~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (202)
+++.+.++..++++.|.+.||+-+=..++|-.
T Consensus 14 DGp~s~eesl~ml~~A~~qGvt~iVaTsHh~~ 45 (254)
T COG4464 14 DGPKSLEESLAMLREAVRQGVTKIVATSHHLH 45 (254)
T ss_pred CCCCcHHHHHHHHHHHHHcCceEEeecccccC
Confidence 34567899999999999999998877666655
No 86
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=48.64 E-value=1.5e+02 Score=24.28 Aligned_cols=125 Identities=10% Similarity=0.034 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCc------CCC-ChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCH
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVY------GPN-NANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTP 109 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Y------g~~-g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~ 109 (202)
...+.++..++.....+.|+..||....- +.. ...++.+..+.+..++.++........... ...-+
T Consensus 16 ~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~------~~~~p 89 (275)
T cd07937 16 TRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVG------YRHYP 89 (275)
T ss_pred eeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccC------ccCCC
Confidence 34567888888888889999999987411 111 222344444443334434333222110000 00112
Q ss_pred HHH-HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEe-----cCCCHHHHHH
Q 040066 110 EYV-RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGL-----SEASPDTIRR 173 (202)
Q Consensus 110 ~~i-~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGv-----sn~~~~~l~~ 173 (202)
..+ +..++.+. ..|++.+-+ - .+..+++.+...++.+++.|+.-...+ +.++++.+.+
T Consensus 90 ~~~~~~di~~~~-~~g~~~iri---~--~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~ 153 (275)
T cd07937 90 DDVVELFVEKAA-KNGIDIFRI---F--DALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVK 153 (275)
T ss_pred cHHHHHHHHHHH-HcCCCEEEE---e--ecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHH
Confidence 222 33333333 335444333 2 222346677778888888886433344 3355554443
No 87
>PRK07094 biotin synthase; Provisional
Probab=47.08 E-value=1.3e+02 Score=24.98 Aligned_cols=119 Identities=16% Similarity=0.189 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCC-CCEEEEeccCcccCCCCCcccCCCHHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPR-EKVQLATKFGIVKFDMSDVVVKGTPEYVRACCE 117 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (202)
.+.++..+.++.+.+.|++.|--...... ......+-+.++.+.. .++.+..-.+. .+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~-~~~~~~l~~l~~~i~~~~~l~i~~~~g~-----------~~~e~l----- 132 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDP-YYTDEKIADIIKEIKKELDVAITLSLGE-----------RSYEEY----- 132 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCC-CCCHHHHHHHHHHHHccCCceEEEecCC-----------CCHHHH-----
Confidence 36788888889999999998864321100 0012233334433221 23433211110 122222
Q ss_pred HHHhHcCCCcccEEEeecC--------CCCCCHHHHHHHHHHHHHcCCcc----EEEecCCCHHHHHHHh
Q 040066 118 ASLKRLDVEYIDLYYQHRV--------DTTIPIEDTMGELKKLVEEGKIK----YIGLSEASPDTIRRAH 175 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~--------~~~~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~ 175 (202)
+.|+..|++.+-+ -+... ......++.+++++.+++.|.-- -+|+...+.+.+.+.+
T Consensus 133 ~~Lk~aG~~~v~~-glEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l 201 (323)
T PRK07094 133 KAWKEAGADRYLL-RHETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDI 201 (323)
T ss_pred HHHHHcCCCEEEe-ccccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHH
Confidence 3456667654331 11111 11234678899999999998621 2566666777665543
No 88
>COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism]
Probab=46.33 E-value=1.8e+02 Score=24.52 Aligned_cols=122 Identities=14% Similarity=0.118 Sum_probs=72.8
Q ss_pred CCCCccccceeeecccCCCCCCC-----CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCCh------hHH----------
Q 040066 15 GGQGFEVSKLGFGCMGLTGIYND-----PVPVEVGISIIKHAFDQGITFFDTADVYGPNNA------NEL---------- 73 (202)
Q Consensus 15 g~~g~~vs~lg~Gt~~~~~~~~~-----~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~------~e~---------- 73 (202)
|..|..+...++-...|.+.-|. -..++...++=+..+++|-+.+.|=. ||..-. -|.
T Consensus 21 GAmGT~lq~~~l~~~df~g~~g~nE~LnlT~Pd~I~~IH~aY~eAGADiIeTNT-Fgat~i~lady~led~v~~in~~aa 99 (311)
T COG0646 21 GAMGTMLQSYGLDEADFRGLKGNNELLNLTKPDVIEAIHRAYIEAGADIIETNT-FGATTIKLADYGLEDKVYEINQKAA 99 (311)
T ss_pred chhhhhHHhcCCcHHhhccccCChHHHhcCCcHHHHHHHHHHHhccCcEEEecC-CCcchhhHhhhChHHHHHHHHHHHH
Confidence 66666777777666555442221 12345666666777799999999875 443100 111
Q ss_pred HHHHHHhc-CC-CCCEEEEeccCcccCCCCCcc-cCCCHHHHHHHHHHHHhHcCCCcccEEEeecCC
Q 040066 74 LVGKALKQ-LP-REKVQLATKFGIVKFDMSDVV-VKGTPEYVRACCEASLKRLDVEYIDLYYQHRVD 137 (202)
Q Consensus 74 ~lg~~l~~-~~-r~~~~i~tK~~~~~~~~~~~~-~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~ 137 (202)
.|.+.... .. +.+.||.--++|.....+-.+ +..+.+.++++..+..+-|=-.-.|++++.-..
T Consensus 100 ~iAR~aA~~~~~~k~rfVaGsiGPt~k~~~~~~~~~v~fd~l~~ay~eq~~~Li~gG~D~iLiET~~ 166 (311)
T COG0646 100 RIARRAADEAGDPKPRFVAGSIGPTNKTLSISPDFAVTFDELVEAYREQVEGLIDGGADLILIETIF 166 (311)
T ss_pred HHHHHHHhhcCCCCceEEEEeccCcCCcCCcCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEehhc
Confidence 11111111 11 146788888887664222111 146788999999998888865678999988653
No 89
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=45.45 E-value=1.9e+02 Score=24.56 Aligned_cols=140 Identities=11% Similarity=0.035 Sum_probs=71.1
Q ss_pred CCCCHHHHHHHH-------HHHHHcCCCeeeCcCCcCC-----------------CChhH---HHHHHHHhcCC-CCCEE
Q 040066 37 DPVPVEVGISII-------KHAFDQGITFFDTADVYGP-----------------NNANE---LLVGKALKQLP-REKVQ 88 (202)
Q Consensus 37 ~~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e---~~lg~~l~~~~-r~~~~ 88 (202)
..++.++..+++ +.|.++|+..++--..+|. +|.-| +++-+.++.+. +-+..
T Consensus 130 ~~mt~eeI~~ii~~f~~aA~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~ 209 (337)
T PRK13523 130 VEMTKEQIKETVLAFKQAAVRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGP 209 (337)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence 345666665544 4556789999985333221 13333 23333333211 11334
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC---CC-HH-HHHHHHHHHHHcCCccEEEe
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT---IP-IE-DTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~---~~-~~-~~~~~l~~l~~~G~vr~iGv 163 (202)
|.-|+.......++ .+.+...+ +-+.|+..|+|+|++ |..... .. .. -.+....++++.-.+.-+++
T Consensus 210 v~vRis~~d~~~~G----~~~~e~~~-i~~~l~~~gvD~i~v---s~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~ 281 (337)
T PRK13523 210 LFVRISASDYHPGG----LTVQDYVQ-YAKWMKEQGVDLIDV---SSGAVVPARIDVYPGYQVPFAEHIREHANIATGAV 281 (337)
T ss_pred eEEEecccccCCCC----CCHHHHHH-HHHHHHHcCCCEEEe---CCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEe
Confidence 55566543221111 23333322 334456667655554 543210 01 11 13555667777767777888
Q ss_pred cCC-CHHHHHHHhcCCCeeEEc
Q 040066 164 SEA-SPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 164 sn~-~~~~l~~~~~~~~~~~~q 184 (202)
... +++..+++++....+.+.
T Consensus 282 G~i~~~~~a~~~l~~g~~D~V~ 303 (337)
T PRK13523 282 GLITSGAQAEEILQNNRADLIF 303 (337)
T ss_pred CCCCCHHHHHHHHHcCCCChHH
Confidence 884 678888888776555554
No 90
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=45.10 E-value=1.2e+02 Score=26.01 Aligned_cols=134 Identities=21% Similarity=0.236 Sum_probs=75.5
Q ss_pred CCHHHHHHHHHHHHHcC-CCeeeCcCCcCCCChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQG-ITFFDTADVYGPNNANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~G-i~~~DtA~~Yg~~g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
.+.++..+.-+.|-+.| .++...|..++ .++.-..+-++++.+. --.+-++--+|- ++.+..
T Consensus 84 ~~~eeIle~Ak~ak~~Ga~r~c~~aagr~-~~~~~~~i~~~v~~Vk~~~~le~c~slG~-----------l~~eq~---- 147 (335)
T COG0502 84 MEVEEILEAAKKAKAAGATRFCMGAAGRG-PGRDMEEVVEAIKAVKEELGLEVCASLGM-----------LTEEQA---- 147 (335)
T ss_pred CCHHHHHHHHHHHHHcCCceEEEEEeccC-CCccHHHHHHHHHHHHHhcCcHHhhccCC-----------CCHHHH----
Confidence 45677888888888999 88888888886 2334444445554421 111222222221 123333
Q ss_pred HHHHhHcCCCcccEEEeecCCCC----------CCHHHHHHHHHHHHHcCCcc----EEEecCCCHHHHHHHhcCCCee-
Q 040066 117 EASLKRLDVEYIDLYYQHRVDTT----------IPIEDTMGELKKLVEEGKIK----YIGLSEASPDTIRRAHAVHPVT- 181 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~~----------~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~~~~~~~~- 181 (202)
+-|+..|+++ +-|+.+.. ..+++-++.++.+++.|.=- =+|+..-..+.++-+.......
T Consensus 148 -~~L~~aGvd~----ynhNLeTs~~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~ 222 (335)
T COG0502 148 -EKLADAGVDR----YNHNLETSPEFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPT 222 (335)
T ss_pred -HHHHHcChhh----eecccccCHHHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCC
Confidence 4467777764 34765442 23678899999999988732 2566665555555543321111
Q ss_pred EEcccCCccccc
Q 040066 182 ALQMEWSLWTRE 193 (202)
Q Consensus 182 ~~q~~~n~~~~~ 193 (202)
.-.++.|.|++.
T Consensus 223 pdsVPIn~l~P~ 234 (335)
T COG0502 223 PDSVPINFLNPI 234 (335)
T ss_pred CCeeeeeeecCC
Confidence 444566666654
No 91
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=44.62 E-value=35 Score=24.00 Aligned_cols=28 Identities=14% Similarity=0.261 Sum_probs=24.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCC
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGP 67 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (202)
+...+.+....+++.|+++||.+..|..
T Consensus 75 ~~~~~~~~~~~~~~~g~~ViD~s~~~R~ 102 (121)
T PF01118_consen 75 PHGASKELAPKLLKAGIKVIDLSGDFRL 102 (121)
T ss_dssp CHHHHHHHHHHHHHTTSEEEESSSTTTT
T ss_pred chhHHHHHHHHHhhCCcEEEeCCHHHhC
Confidence 5677889999999999999999998863
No 92
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=43.75 E-value=2e+02 Score=24.39 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
...+.++..++++..-++|+..|+.+
T Consensus 19 ~~f~~~~~~~ia~~Ld~aGV~~IEvg 44 (333)
T TIGR03217 19 HQFTIEQVRAIAAALDEAGVDAIEVT 44 (333)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 34577899999999999999999994
No 93
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=43.46 E-value=1.5e+02 Score=22.91 Aligned_cols=71 Identities=27% Similarity=0.324 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChh-H--HHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNAN-E--LLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~-e--~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
++++...+.+.|.++|..++=|+..|..+|.+ | +.+.+.++ .+ +..|..- + ++ +.+...+.+
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~----~~--v~ik~aG------G--ik-t~~~~l~~~ 193 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVG----GR--VGVKAAG------G--IR-TLEDALAMI 193 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----CC--ceEEEeC------C--CC-CHHHHHHHH
Confidence 46788899999999999999999888742212 2 44555554 11 2223311 1 11 556666666
Q ss_pred HHHHhHcCC
Q 040066 117 EASLKRLDV 125 (202)
Q Consensus 117 ~~sL~~Lg~ 125 (202)
+.-..|+|+
T Consensus 194 ~~g~~riG~ 202 (203)
T cd00959 194 EAGATRIGT 202 (203)
T ss_pred HhChhhccC
Confidence 666667765
No 94
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=43.25 E-value=1.7e+02 Score=23.49 Aligned_cols=87 Identities=21% Similarity=0.135 Sum_probs=54.5
Q ss_pred ccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCC
Q 040066 21 VSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDM 100 (202)
Q Consensus 21 vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~ 100 (202)
+-++.+-|..+ ++++..++.+.++++|..|+=|+..+..+|-+.+- -+.+++.-... +.-|..
T Consensus 127 ~lKVIlEt~~L--------t~ee~~~A~~i~~~aGAdFVKTSTGf~~~gAT~ed-v~lM~~~vg~~--vgvKaS------ 189 (228)
T COG0274 127 VLKVILETGLL--------TDEEKRKACEIAIEAGADFVKTSTGFSAGGATVED-VKLMKETVGGR--VGVKAS------ 189 (228)
T ss_pred eEEEEEecccc--------CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH-HHHHHHHhccC--ceeecc------
Confidence 55667777543 56777899999999999999999977763333332 22233211111 222221
Q ss_pred CCcccCCCHHHHHHHHHHHHhHcCCCc
Q 040066 101 SDVVVKGTPEYVRACCEASLKRLDVEY 127 (202)
Q Consensus 101 ~~~~~~~~~~~i~~~~~~sL~~Lg~d~ 127 (202)
++ -.+.+.....++....|+|++.
T Consensus 190 GG---Irt~eda~~~i~aga~RiGtSs 213 (228)
T COG0274 190 GG---IRTAEDAKAMIEAGATRIGTSS 213 (228)
T ss_pred CC---cCCHHHHHHHHHHhHHHhcccc
Confidence 11 0167888888999999999763
No 95
>KOG1939 consensus Oxoprolinase [Amino acid transport and metabolism]
Probab=42.23 E-value=90 Score=30.09 Aligned_cols=59 Identities=25% Similarity=0.275 Sum_probs=48.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeC----cCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccC
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDT----ADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKF 98 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~Dt----A~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~ 98 (202)
..+|++..++.|+.+++.|++-+-. +..|.. .|..+|+..++..-..+-+++|+.|.-.
T Consensus 163 kk~De~alr~~Lk~l~~~G~~siav~l~HSyt~P~---HE~~v~kiA~e~GF~~vSLSs~l~PMik 225 (1247)
T KOG1939|consen 163 KKVDEEALRQDLKELYDKGVKSIAVVLLHSYTYPD---HELEVGKIAKEIGFSHVSLSSKLMPMIK 225 (1247)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEeeeeeccccCCc---HHHHHHHHHHHhCccceechhcccccee
Confidence 3578899999999999999998764 445665 7899999888877778899999987644
No 96
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=42.07 E-value=1.2e+02 Score=22.99 Aligned_cols=73 Identities=18% Similarity=0.091 Sum_probs=44.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEecc-CcccCCCCCcccCCCHHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKF-GIVKFDMSDVVVKGTPEYVRACCE 117 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~-~~~~~~~~~~~~~~~~~~i~~~~~ 117 (202)
..++...-++++|-+.|+.+|=.|+.||. +-..+-+.+.. .=++++.|.- +.... +...+.+.++
T Consensus 11 NT~~tle~a~erA~elgik~~vVAS~tG~---tA~k~lemveg--~lkvVvVthh~Gf~e~---------g~~e~~~E~~ 76 (186)
T COG1751 11 NTDETLEIAVERAKELGIKHIVVASSTGY---TALKALEMVEG--DLKVVVVTHHAGFEEK---------GTQEMDEEVR 76 (186)
T ss_pred chHHHHHHHHHHHHhcCcceEEEEecccH---HHHHHHHhccc--CceEEEEEeecccccC---------CceecCHHHH
Confidence 34556666788888999999999999995 33333333322 1235555443 22211 2234566677
Q ss_pred HHHhHcCC
Q 040066 118 ASLKRLDV 125 (202)
Q Consensus 118 ~sL~~Lg~ 125 (202)
+-|+..|.
T Consensus 77 ~~L~erGa 84 (186)
T COG1751 77 KELKERGA 84 (186)
T ss_pred HHHHHcCc
Confidence 77777774
No 97
>PRK15108 biotin synthase; Provisional
Probab=41.61 E-value=2.2e+02 Score=24.22 Aligned_cols=106 Identities=14% Similarity=0.189 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCc-CCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVY-GPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCE 117 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (202)
.+.+++.+..+.+.+.|++.|--.... ......-+.+.+.++..+...+.++.-.+. .+.+.+
T Consensus 76 ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~v~~s~G~-----------ls~e~l----- 139 (345)
T PRK15108 76 MEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLETCMTLGT-----------LSESQA----- 139 (345)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecCCCCCcchHHHHHHHHHHHHhCCCEEEEeCCc-----------CCHHHH-----
Confidence 567888888888889999999543221 110111234555555432222323221221 133333
Q ss_pred HHHhHcCCCcccEEEeecC------CCCCCHHHHHHHHHHHHHcCCccE
Q 040066 118 ASLKRLDVEYIDLYYQHRV------DTTIPIEDTMGELKKLVEEGKIKY 160 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~------~~~~~~~~~~~~l~~l~~~G~vr~ 160 (202)
+-|+..|+|++.+-+=-.| .....+++.++.++.+++.|.--.
T Consensus 140 ~~LkeAGld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~ 188 (345)
T PRK15108 140 QRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVC 188 (345)
T ss_pred HHHHHcCCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 3356667664332110011 112347789999999999997333
No 98
>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.09 E-value=39 Score=27.46 Aligned_cols=47 Identities=15% Similarity=0.244 Sum_probs=30.9
Q ss_pred CCCccccceeeecccCCCCCCCC--CCHHHHHHHHHH----HHHcCCCeeeCcC
Q 040066 16 GQGFEVSKLGFGCMGLTGIYNDP--VPVEVGISIIKH----AFDQGITFFDTAD 63 (202)
Q Consensus 16 ~~g~~vs~lg~Gt~~~~~~~~~~--~~~~~~~~~l~~----A~~~Gi~~~DtA~ 63 (202)
.+|+.+|.++|.+-+=. ++|+. ..++++.++++. |.+.|||.|--|.
T Consensus 65 etgv~ipSmClSaHRRf-PfGS~D~~~r~~aleiM~KaI~LA~dLGIRtIQLAG 117 (287)
T COG3623 65 ETGVRIPSMCLSAHRRF-PFGSKDEATRQQALEIMEKAIQLAQDLGIRTIQLAG 117 (287)
T ss_pred HhCCCccchhhhhhccC-CCCCCCHHHHHHHHHHHHHHHHHHHHhCceeEeecc
Confidence 68999999998765311 23332 234556555554 5689999998875
No 99
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=40.95 E-value=2.2e+02 Score=23.94 Aligned_cols=121 Identities=15% Similarity=0.119 Sum_probs=67.0
Q ss_pred CCHHHHHHHHHHHHHc-CCCeeeCcCCcCCCC-hhHHHHH---HHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHH
Q 040066 39 VPVEVGISIIKHAFDQ-GITFFDTADVYGPNN-ANELLVG---KALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYV 112 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~-Gi~~~DtA~~Yg~~g-~~e~~lg---~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (202)
.+.++..+++++..+. ||+-+--+. |++- .+...+. +.+++.+ ...+.|.|+.... .+..+
T Consensus 119 l~~~e~~~~i~~i~~~~~I~~VilSG--GDPl~~~~~~L~~ll~~l~~i~~v~~iri~Tr~~v~-----------~p~ri 185 (321)
T TIGR03822 119 LSPAELDAAFAYIADHPEIWEVILTG--GDPLVLSPRRLGDIMARLAAIDHVKIVRFHTRVPVA-----------DPARV 185 (321)
T ss_pred CCHHHHHHHHHHHHhCCCccEEEEeC--CCcccCCHHHHHHHHHHHHhCCCccEEEEeCCCccc-----------Chhhc
Confidence 3557777888877644 887664332 2211 1112222 3333333 2345677776422 12334
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccE----E--EecCCCHHHHHHHh
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKY----I--GLSEASPDTIRRAH 175 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~----i--Gvsn~~~~~l~~~~ 175 (202)
.+.+-+.|++.|.. ..+.+|...+..-.+++.++++.|++.|..-. + |+ |.+.+.+.++.
T Consensus 186 t~ell~~L~~~g~~--v~i~l~~~h~~el~~~~~~ai~~L~~~Gi~v~~q~vLl~gv-Nd~~~~l~~l~ 251 (321)
T TIGR03822 186 TPALIAALKTSGKT--VYVALHANHARELTAEARAACARLIDAGIPMVSQSVLLRGV-NDDPETLAALM 251 (321)
T ss_pred CHHHHHHHHHcCCc--EEEEecCCChhhcCHHHHHHHHHHHHcCCEEEEEeeEeCCC-CCCHHHHHHHH
Confidence 44455566667732 35777875443335789999999999996211 1 44 56666666554
No 100
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=40.78 E-value=1.9e+02 Score=23.32 Aligned_cols=26 Identities=12% Similarity=0.189 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
...+.++..++++...+.||..++..
T Consensus 17 ~~~~~~~k~~i~~~L~~~Gv~~iEvg 42 (263)
T cd07943 17 HQFTLEQVRAIARALDAAGVPLIEVG 42 (263)
T ss_pred eecCHHHHHHHHHHHHHcCCCEEEee
Confidence 34577899999999999999999997
No 101
>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed
Probab=40.78 E-value=2.1e+02 Score=23.81 Aligned_cols=135 Identities=13% Similarity=0.105 Sum_probs=73.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCC-hhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPNN-ANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYVRAC 115 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g-~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (202)
..+.+++.++++.+.+.|++.|.-+..-..-. .-.+++. .+++.+ ...+.|+|-... +.+.
T Consensus 48 ~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~li~-~i~~~~~~~~i~itTNG~l----------------l~~~ 110 (331)
T PRK00164 48 LLSLEEIERLVRAFVALGVRKVRLTGGEPLLRKDLEDIIA-ALAALPGIRDLALTTNGYL----------------LARR 110 (331)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEECCCCcCccCHHHHHH-HHHhcCCCceEEEEcCchh----------------HHHH
Confidence 35678999999999999999888653211100 1122222 233321 234555444211 1222
Q ss_pred HHHHHhHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHhc---CCCe
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDTT--------IPIEDTMGELKKLVEEGK----IKYIGLSEASPDTIRRAHA---VHPV 180 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----vr~iGvsn~~~~~l~~~~~---~~~~ 180 (202)
-..|...|++.+- +.+|..++. ..++.++++++.+++.|. +..+.+...+.+++.++.+ ...+
T Consensus 111 -~~~L~~agl~~i~-ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~n~~ei~~l~~~~~~~gv 188 (331)
T PRK00164 111 -AAALKDAGLDRVN-VSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGVNDDEIPDLLEWAKDRGI 188 (331)
T ss_pred -HHHHHHcCCCEEE-EEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCCCHHHHHHHHHHHHhCCC
Confidence 2345555665443 344544321 247889999999999885 3344444556666655443 3344
Q ss_pred eEEcccCCccc
Q 040066 181 TALQMEWSLWT 191 (202)
Q Consensus 181 ~~~q~~~n~~~ 191 (202)
.+.-++|.++.
T Consensus 189 ~v~~ie~~p~~ 199 (331)
T PRK00164 189 QLRFIELMPTG 199 (331)
T ss_pred eEEEEEeeECC
Confidence 45555566544
No 102
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=40.15 E-value=2.5e+02 Score=24.30 Aligned_cols=154 Identities=13% Similarity=0.067 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHH-------HHHHHcCCCeeeCcCCcCC-----------------CChhHH---HHH---HHHhcCCCC
Q 040066 36 NDPVPVEVGISII-------KHAFDQGITFFDTADVYGP-----------------NNANEL---LVG---KALKQLPRE 85 (202)
Q Consensus 36 ~~~~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e~---~lg---~~l~~~~r~ 85 (202)
...+++++..+++ +.|.++|+..++--...|. +|.-|. ++- +++++.-.+
T Consensus 136 pr~mt~~eI~~ii~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~ 215 (363)
T COG1902 136 PRELTEEEIEEVIEDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGA 215 (363)
T ss_pred CccCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 3456666665544 5567899999885433332 143342 111 222221234
Q ss_pred CEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcC-CCcccEEEeecCCCC-CCHH---HHHHHHHHHHHcCCccE
Q 040066 86 KVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLD-VEYIDLYYQHRVDTT-IPIE---DTMGELKKLVEEGKIKY 160 (202)
Q Consensus 86 ~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg-~d~iDl~~lh~~~~~-~~~~---~~~~~l~~l~~~G~vr~ 160 (202)
+..|.-++.+.....+. ..+.+. ...+-+.|+..| +|||++.--+..... .... -.....+..+....+-.
T Consensus 216 ~~~vg~Rls~~d~~~~~---g~~~~e-~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pv 291 (363)
T COG1902 216 DFPVGVRLSPDDFFDGG---GLTIEE-AVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPV 291 (363)
T ss_pred CceEEEEECccccCCCC---CCCHHH-HHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCE
Confidence 55677777765441110 112222 245677888899 799998776653111 1111 22334445566656767
Q ss_pred EEecC-CCHHHHHHHhcCCCeeEE-cccCCccccc
Q 040066 161 IGLSE-ASPDTIRRAHAVHPVTAL-QMEWSLWTRE 193 (202)
Q Consensus 161 iGvsn-~~~~~l~~~~~~~~~~~~-q~~~n~~~~~ 193 (202)
|.+.. +++++.+++++....+.+ ..+-.+.|++
T Consensus 292 i~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~ 326 (363)
T COG1902 292 IAVGGINDPEQAEEILASGRADLVAMGRPFLADPD 326 (363)
T ss_pred EEeCCCCCHHHHHHHHHcCCCCEEEechhhhcCcc
Confidence 77775 778888888776543333 3334444443
No 103
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=40.10 E-value=69 Score=26.97 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=51.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHH
Q 040066 34 IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVR 113 (202)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (202)
.+|.+.+.++..++++..-+.|.|.+ .|++ .++.+...|+.-.. +.+.+
T Consensus 7 FYG~PWs~e~R~~l~~f~~~~kmN~Y----iYAP----------------KdDpyhr~~Wre~Y----------p~~el- 55 (306)
T PF07555_consen 7 FYGRPWSHEDRLDLIRFLGRYKMNTY----IYAP----------------KDDPYHRSKWREPY----------PEEEL- 55 (306)
T ss_dssp SSSS---HHHHHHHHHHHHHTT--EE----EE------------------TT-TTTTTTTTS-------------HHHH-
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCceE----EECC----------------CCChHHHhhhcccC----------CHHHH-
Confidence 35666778999999999999999987 5774 22222222332111 12222
Q ss_pred HHHHHHHhHcCCCcccEEEeecCCCCC------CHHHHHHHHHHHHHcCCccEEEecCCC
Q 040066 114 ACCEASLKRLDVEYIDLYYQHRVDTTI------PIEDTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~------~~~~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
+.+++..+.-....+|+++-=.|.... +++.+.+.++++.+.| ||.+||.--+
T Consensus 56 ~~l~~L~~~a~~~~V~Fv~aisPg~~~~~s~~~d~~~L~~K~~ql~~lG-vr~FailfDD 114 (306)
T PF07555_consen 56 AELKELADAAKANGVDFVYAISPGLDICYSSEEDFEALKAKFDQLYDLG-VRSFAILFDD 114 (306)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEBGTTT--TSHHHHHHHHHHHHHHHHCTT---EEEEE-TS
T ss_pred HHHHHHHHHHHHcCCEEEEEECcccccccCcHHHHHHHHHHHHHHHhcC-CCEEEEeecC
Confidence 333333333333456776654453332 3456788888888886 6788886533
No 104
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=39.84 E-value=2.1e+02 Score=23.95 Aligned_cols=133 Identities=14% Similarity=0.076 Sum_probs=69.9
Q ss_pred CHHHHHHHHHHHHHcCCCeeeC----------cCCcCCC-ChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCC
Q 040066 40 PVEVGISIIKHAFDQGITFFDT----------ADVYGPN-NANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKG 107 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~Dt----------A~~Yg~~-g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~ 107 (202)
+.+...++.+.+.+.|+..||- ...+|.+ -..-..+.+.++... .-++-|+-|+-.....
T Consensus 64 ~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~~~~~pvsvKiR~g~~~-------- 135 (309)
T PF01207_consen 64 DPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRKAVPIPVSVKIRLGWDD-------- 135 (309)
T ss_dssp -HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHHH-SSEEEEEEESECT---------
T ss_pred cHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhcccccceEEeccccccc--------
Confidence 5677778888888889999993 2234431 001223344443311 1123445454321110
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCeeEEc
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPI--EDTMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~~q 184 (202)
+.+...+ +-+.|+..| +|.+.+|.-...... ..-|+.+.++++.=.|--||=.+ ++.+.+++.++.+..+-++
T Consensus 136 ~~~~~~~-~~~~l~~~G---~~~i~vH~Rt~~q~~~~~a~w~~i~~i~~~~~ipvi~NGdI~s~~d~~~~~~~tg~dgvM 211 (309)
T PF01207_consen 136 SPEETIE-FARILEDAG---VSAITVHGRTRKQRYKGPADWEAIAEIKEALPIPVIANGDIFSPEDAERMLEQTGADGVM 211 (309)
T ss_dssp -CHHHHH-HHHHHHHTT-----EEEEECS-TTCCCTS---HHHHHHCHHC-TSEEEEESS--SHHHHHHHCCCH-SSEEE
T ss_pred chhHHHH-HHHHhhhcc---cceEEEecCchhhcCCcccchHHHHHHhhcccceeEEcCccCCHHHHHHHHHhcCCcEEE
Confidence 2233333 445677777 788999986544332 35688888888886677777766 7788888887765555554
No 105
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=39.20 E-value=1.1e+02 Score=20.13 Aligned_cols=66 Identities=15% Similarity=0.077 Sum_probs=38.9
Q ss_pred HhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC-CccEEEecCCC-HHHHHHHhcCCCeeEEcccCC
Q 040066 120 LKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEG-KIKYIGLSEAS-PDTIRRAHAVHPVTALQMEWS 188 (202)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G-~vr~iGvsn~~-~~~l~~~~~~~~~~~~q~~~n 188 (202)
++.+.....|++++...-+..+..+++ +.+++.+ .++-|-+++.. .....++.+.+-..++.-+++
T Consensus 36 ~~~~~~~~~d~iiid~~~~~~~~~~~~---~~i~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~ 103 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPDGDGLELL---EQIRQINPSIPIIVVTDEDDSDEVQEALRAGADDYLSKPFS 103 (112)
T ss_dssp HHHHHHSTESEEEEESSSSSSBHHHHH---HHHHHHTTTSEEEEEESSTSHHHHHHHHHTTESEEEESSSS
T ss_pred HHHhcccCceEEEEEeeeccccccccc---cccccccccccEEEecCCCCHHHHHHHHHCCCCEEEECCCC
Confidence 333334459999998655444444444 4445544 77888888744 556666666554445544443
No 106
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=38.99 E-value=98 Score=28.53 Aligned_cols=54 Identities=24% Similarity=0.210 Sum_probs=38.7
Q ss_pred ChhHHHHHHHHhc-CCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHc-CCCcccEEEeecCCC
Q 040066 69 NANELLVGKALKQ-LPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRL-DVEYIDLYYQHRVDT 138 (202)
Q Consensus 69 g~~e~~lg~~l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~L-g~d~iDl~~lh~~~~ 138 (202)
|.+-+.++++|.. .||+++.|.--.. .++ +-+-.||+|| |+.|+.-+.+-|-.+
T Consensus 632 gGsGkEF~~aLGGN~pREQFTvVmLTY-------------ERe---~VLm~sLeRL~gLPYLnKvvVVWNsp 687 (907)
T KOG2264|consen 632 GGSGKEFSKALGGNRPREQFTVVMLTY-------------ERE---AVLMGSLERLHGLPYLNKVVVVWNSP 687 (907)
T ss_pred CCchHHHHHHhcCCCccceEEEEEEEe-------------hHH---HHHHHHHHHhhCCcccceEEEEeCCC
Confidence 5578888999975 6788887754331 122 3366899999 899999888877544
No 107
>PF09391 DUF2000: Protein of unknown function (DUF2000); InterPro: IPR018988 This is a family of proteins of unknown function. The structure of one of the proteins in this family has been shown to adopt an alpha beta fold. ; PDB: 2GAX_A.
Probab=38.06 E-value=1e+02 Score=22.48 Aligned_cols=47 Identities=19% Similarity=0.153 Sum_probs=27.7
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCE
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKV 87 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~ 87 (202)
+.++.+++.+.|.+.|+.++|....=.. ..+.....+.+++.+.+++
T Consensus 62 ~~~~L~~l~~~a~~~~i~~~~F~~~aq~-~~~y~e~~~~~~~~~~~~l 108 (133)
T PF09391_consen 62 NSEQLRELRQKALEREITVVDFTDEAQS-TGHYEEYRAAVAATPEEDL 108 (133)
T ss_dssp -HHHHHHHHHHHHHTT---EEEEGGGGG----HHHHHHHHTT--TTT-
T ss_pred CHHHHHHHHHHHHHCCCeEEeChHHHhh-CCCHHHHHHHHhcCChhhc
Confidence 5689999999999999999996654433 3456666667776555554
No 108
>PRK14466 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=37.09 E-value=2.7e+02 Score=23.90 Aligned_cols=92 Identities=13% Similarity=0.040 Sum_probs=57.8
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcccEEEeec-CCCCCCHHHHHHHHHHHHHcCCc----cEEEecCCCHH-HHHHHhcCC
Q 040066 105 VKGTPEYVRACCEASLKRLDVEYIDLYYQHR-VDTTIPIEDTMGELKKLVEEGKI----KYIGLSEASPD-TIRRAHAVH 178 (202)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~-~~~~~~~~~~~~~l~~l~~~G~v----r~iGvsn~~~~-~l~~~~~~~ 178 (202)
..++.+.|..++...-+. ..++-+.+-. -++...++++.+++..+.+..-. +.|-||+.... .+.++....
T Consensus 129 rnLt~~EIl~Qv~~~~~~---~~i~nIvfmGmGEPL~N~d~vi~al~~l~~~~g~~~s~r~ItVsT~G~~~~i~~l~~~~ 205 (345)
T PRK14466 129 GNLTAAQILNQIYSLPER---DKLTNLVFMGMGEPLDNLDEVLKALEILTAPYGYGWSPKRITVSTVGLKKGLKRFLEES 205 (345)
T ss_pred CCCCHHHHHHHHHhhhhc---CCCCeEEEeeeCcCcccHHHHHHHHHHHhhccccCcCCceEEEEcCCCchHHHHHhhcc
Confidence 347888888888766322 2355555554 34445578899999998876443 68888887754 477766544
Q ss_pred CeeEEcccCCcccccccccccC
Q 040066 179 PVTALQMEWSLWTREIEDEIVP 200 (202)
Q Consensus 179 ~~~~~q~~~n~~~~~~~~~ll~ 200 (202)
+ ..+.+.+|..+.+.-.++.|
T Consensus 206 ~-~~LavSLha~~~e~R~~i~P 226 (345)
T PRK14466 206 E-CHLAISLHSPFPEQRRELMP 226 (345)
T ss_pred C-cEEEEEcCCCCHHHHHHhcC
Confidence 3 35567777555443333444
No 109
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.74 E-value=1.3e+02 Score=24.89 Aligned_cols=64 Identities=13% Similarity=0.143 Sum_probs=41.5
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 177 (202)
+..+-+.|.++|+++|.+-.++.|.......+.++.+..+.+...++...+. .+...++.+.+.
T Consensus 28 k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~-~~~~~ie~A~~~ 91 (287)
T PRK05692 28 KIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALT-PNLKGLEAALAA 91 (287)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEe-cCHHHHHHHHHc
Confidence 4556677999999999998666554222233446666666554445555554 477778887765
No 110
>COG2987 HutU Urocanate hydratase [Amino acid transport and metabolism]
Probab=36.53 E-value=1.2e+02 Score=27.23 Aligned_cols=113 Identities=13% Similarity=0.070 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHhcC---CCCCEEEEeccCcccCCCCCcc--cCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHH
Q 040066 69 NANELLVGKALKQL---PREKVQLATKFGIVKFDMSDVV--VKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIE 143 (202)
Q Consensus 69 g~~e~~lg~~l~~~---~r~~~~i~tK~~~~~~~~~~~~--~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~ 143 (202)
|.-|.+...+-+.. -+.++++++=++-.....+-.. .....=.++-.-.+.-+||.+.|+|.. ...++
T Consensus 148 GTyeT~~~~~r~h~~gdL~Gk~~lTaGLGGMgGAQplA~~ma~~v~i~vevd~srI~~Rl~t~y~d~~-------a~~ld 220 (561)
T COG2987 148 GTYETFAEAGRQHFGGDLKGKWVLTAGLGGMGGAQPLAATMAGAVCIAVEVDESRIDKRLRTGYLDEI-------AETLD 220 (561)
T ss_pred chHHHHHHHHHHhcCCCccceEEEecCCCcccccchHHHHhcCceEEEEEeCHHHHHHHHhcchhhhh-------cCCHH
Confidence 44566555444332 2567888887775543321000 000000011111233367778888762 24578
Q ss_pred HHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC-CCeeEE--cccCC
Q 040066 144 DTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV-HPVTAL--QMEWS 188 (202)
Q Consensus 144 ~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-~~~~~~--q~~~n 188 (202)
+.+...++..+.|+-.+||+-..-.+.+.++++. ..|+++ |..+|
T Consensus 221 eAl~~a~~~~~ag~p~SIgl~GNaaei~~~l~~r~~~pD~vtDQTsaH 268 (561)
T COG2987 221 EALALAEEATAAGEPISIGLLGNAAEILPELLRRGIRPDLVTDQTSAH 268 (561)
T ss_pred HHHHHHHHHHhcCCceEEEEeccHHHHHHHHHHcCCCCceeccccccc
Confidence 9999999999999999999999888888888876 456665 44443
No 111
>TIGR01093 aroD 3-dehydroquinate dehydratase, type I. Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088.
Probab=36.24 E-value=2.2e+02 Score=22.53 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEE------------------------eecCCCCCCHHHHHHHHHHHHHcC--CccEE
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYY------------------------QHRVDTTIPIEDTMGELKKLVEEG--KIKYI 161 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~------------------------lh~~~~~~~~~~~~~~l~~l~~~G--~vr~i 161 (202)
+.+.-.+-++....+++.||+|+=+ .|+.+..++.+++...++++.+.| .+|-.
T Consensus 76 ~~~~~~~ll~~~~~~~~~d~vDiEl~~~~~~~~~l~~~~~~~~~kvI~S~H~f~~tp~~~~l~~~~~~~~~~gaDivKia 155 (228)
T TIGR01093 76 NEEEYLEELKRAADSPGPDFVDIELFLPDDAVKELINIAKKGGTKIIMSYHDFQKTPSWEEIVERLEKALSYGADIVKIA 155 (228)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEEEccCCHHHHHHHHHHHHHCCCEEEEeccCCCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 4444445566766788889998821 233333344566777788888776 45555
Q ss_pred EecCCCHH
Q 040066 162 GLSEASPD 169 (202)
Q Consensus 162 Gvsn~~~~ 169 (202)
...+...+
T Consensus 156 ~~a~~~~D 163 (228)
T TIGR01093 156 VMANSKED 163 (228)
T ss_pred eccCCHHH
Confidence 54444333
No 112
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=35.89 E-value=2.9e+02 Score=23.94 Aligned_cols=41 Identities=10% Similarity=0.082 Sum_probs=29.7
Q ss_pred cceeeecccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 22 SKLGFGCMGLTG----IYNDP-VPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 22 s~lg~Gt~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
.+++||.|.+|+ ++|.+ .+.....+.++.+.+.|+..|...
T Consensus 7 ~~f~~~~w~~~~~~~~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~ 52 (382)
T TIGR02631 7 DRFTFGLWTVGWVGRDPFGDATRTALDPVEAVHKLAELGAYGVTFH 52 (382)
T ss_pred CceEEEeeccCCCCCCCCCCCCCCCcCHHHHHHHHHHhCCCEEEec
Confidence 367899998873 34433 233455688999999999999876
No 113
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=35.81 E-value=2.4e+02 Score=22.94 Aligned_cols=132 Identities=13% Similarity=0.077 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCC--C----ChhHHHHHHHHhcCCC-CCEEEEeccCcccCCCCCcccCCCHHHH
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGP--N----NANELLVGKALKQLPR-EKVQLATKFGIVKFDMSDVVVKGTPEYV 112 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~----g~~e~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (202)
+.++..+..+.+.+.|+..|+.--.... . ....+.+.+.++...+ -++-|.-|+.+.. +.+.+
T Consensus 109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~----------~~~~~ 178 (289)
T cd02810 109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF----------DLEDI 178 (289)
T ss_pred CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC----------CHHHH
Confidence 4578888889999999999995322211 0 1123444444444221 1556778886531 33444
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCC-------------CC---C-----H-HHHHHHHHHHHHcC--CccEEEecC-CC
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDT-------------TI---P-----I-EDTMGELKKLVEEG--KIKYIGLSE-AS 167 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~-------------~~---~-----~-~~~~~~l~~l~~~G--~vr~iGvsn-~~ 167 (202)
.+.++ .+...|.|. +.+|+-.. .. . . .-.++.+.++++.= .+.-||+.. ++
T Consensus 179 ~~~a~-~l~~~Gad~---i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~ipiia~GGI~~ 254 (289)
T cd02810 179 VELAK-AAERAGADG---LTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDIPIIGVGGIDS 254 (289)
T ss_pred HHHHH-HHHHcCCCE---EEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCCCEEEECCCCC
Confidence 44333 456677554 45453110 00 0 1 12466777777653 688899988 45
Q ss_pred HHHHHHHhcCCCeeEEccc
Q 040066 168 PDTIRRAHAVHPVTALQME 186 (202)
Q Consensus 168 ~~~l~~~~~~~~~~~~q~~ 186 (202)
++.+.+++..+ .+.+|+-
T Consensus 255 ~~da~~~l~~G-Ad~V~vg 272 (289)
T cd02810 255 GEDVLEMLMAG-ASAVQVA 272 (289)
T ss_pred HHHHHHHHHcC-ccHheEc
Confidence 78888877644 5666643
No 114
>PRK06256 biotin synthase; Validated
Probab=35.47 E-value=2.7e+02 Score=23.33 Aligned_cols=118 Identities=23% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCHHHHHHHHHHHHHcCCCeee-CcCCcCCCChhHHHHHHHHhcCCC-CCEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFD-TADVYGPNNANELLVGKALKQLPR-EKVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~D-tA~~Yg~~g~~e~~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
.+.++..+.++.+.+.|++.|- .+..++.....-..+-+.++...+ -.+.+.+-.+. .+.+.+
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~-----------l~~e~l---- 155 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGL-----------LTEEQA---- 155 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCc-----------CCHHHH----
Confidence 4778888999999999986443 333333311111233344443221 22323222221 133333
Q ss_pred HHHHhHcCCCcccEEEeec-------CCCCCCHHHHHHHHHHHHHcCCcc----EEEecCCCHHHHHHH
Q 040066 117 EASLKRLDVEYIDLYYQHR-------VDTTIPIEDTMGELKKLVEEGKIK----YIGLSEASPDTIRRA 174 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~-------~~~~~~~~~~~~~l~~l~~~G~vr----~iGvsn~~~~~l~~~ 174 (202)
+.|+..|++.+-+- +.. ......+++.+++++.+++.|.-- -+|+ +.+.+++.+.
T Consensus 156 -~~LkeaG~~~v~~~-lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~Gl-gEt~ed~~~~ 221 (336)
T PRK06256 156 -ERLKEAGVDRYNHN-LETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGM-GESLEDRVEH 221 (336)
T ss_pred -HHHHHhCCCEEecC-CccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeC-CCCHHHHHHH
Confidence 34677776644221 111 111223678899999999998622 2445 5556655543
No 115
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=34.00 E-value=3e+02 Score=23.51 Aligned_cols=120 Identities=10% Similarity=0.134 Sum_probs=74.2
Q ss_pred CCHHHHHHHHHHHHH---cCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHH
Q 040066 39 VPVEVGISIIKHAFD---QGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRAC 115 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~---~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (202)
.++++..+++....+ .=+-++|..+..+. --..+-+.+. +..-++|.+|.-.... ....+.+.+-
T Consensus 48 ~~~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s---~~~~l~~~~~--~~piilV~NK~DLl~k-------~~~~~~~~~~ 115 (360)
T TIGR03597 48 LNDDDFLNLLNSLGDSNALIVYVVDIFDFEGS---LIPELKRFVG--GNPVLLVGNKIDLLPK-------SVNLSKIKEW 115 (360)
T ss_pred CCHHHHHHHHhhcccCCcEEEEEEECcCCCCC---ccHHHHHHhC--CCCEEEEEEchhhCCC-------CCCHHHHHHH
Confidence 456666666665543 33456676554442 1223333333 3446789999864321 1235566666
Q ss_pred HHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTI 171 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l 171 (202)
+++.++..|....+++.+.. .....++++++.+.++.+.+.|-.+|.+|..-+.+
T Consensus 116 l~~~~k~~g~~~~~i~~vSA-k~g~gv~eL~~~l~~~~~~~~v~~vG~~nvGKStl 170 (360)
T TIGR03597 116 MKKRAKELGLKPVDIILVSA-KKGNGIDELLDKIKKARNKKDVYVVGVTNVGKSSL 170 (360)
T ss_pred HHHHHHHcCCCcCcEEEecC-CCCCCHHHHHHHHHHHhCCCeEEEECCCCCCHHHH
Confidence 66667777765446666543 34566889999998887667899999999886543
No 116
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=33.74 E-value=2.3e+02 Score=25.76 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=40.0
Q ss_pred cCCCeeeCcCCcCCCChhHHHHH------------------------HHHhcCCCCCEEEEeccCcccCCCCCcccCCCH
Q 040066 54 QGITFFDTADVYGPNNANELLVG------------------------KALKQLPREKVQLATKFGIVKFDMSDVVVKGTP 109 (202)
Q Consensus 54 ~Gi~~~DtA~~Yg~~g~~e~~lg------------------------~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~ 109 (202)
.-||.+||..|--.+|+.|++++ +||+. .-.-++++.|+-.. ...+
T Consensus 68 ~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~-gL~PIVVvNKiDrp---------~Arp 137 (603)
T COG1217 68 TRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALAL-GLKPIVVINKIDRP---------DARP 137 (603)
T ss_pred eEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHc-CCCcEEEEeCCCCC---------CCCH
Confidence 45778888776544577787766 33322 22356777777432 2357
Q ss_pred HHHHHHHHHHHhHcCC
Q 040066 110 EYVRACCEASLKRLDV 125 (202)
Q Consensus 110 ~~i~~~~~~sL~~Lg~ 125 (202)
+.+..++-..+-.||-
T Consensus 138 ~~Vvd~vfDLf~~L~A 153 (603)
T COG1217 138 DEVVDEVFDLFVELGA 153 (603)
T ss_pred HHHHHHHHHHHHHhCC
Confidence 7788888888888874
No 117
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=33.07 E-value=1.2e+02 Score=26.40 Aligned_cols=84 Identities=12% Similarity=0.202 Sum_probs=47.9
Q ss_pred HcCCCeee-----CcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCC-CCcccCC----CHHHHHHHHHHHHhH
Q 040066 53 DQGITFFD-----TADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDM-SDVVVKG----TPEYVRACCEASLKR 122 (202)
Q Consensus 53 ~~Gi~~~D-----tA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~-~~~~~~~----~~~~i~~~~~~sL~~ 122 (202)
+.+...|| ++.-+.. ++..+.+.++.....=+||-||+-...... ...+..+ ..+.|++.+.+.|++
T Consensus 109 ~~~~~~yD~fiii~s~rf~~---ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k 185 (376)
T PF05049_consen 109 EVKFYRYDFFIIISSERFTE---NDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQK 185 (376)
T ss_dssp HTTGGG-SEEEEEESSS--H---HHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHC
T ss_pred HccccccCEEEEEeCCCCch---hhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHH
Confidence 45666666 3444443 788889999886666678999986421110 0001112 246788889999999
Q ss_pred cCCCcccEEEeecCCCC
Q 040066 123 LDVEYIDLYYQHRVDTT 139 (202)
Q Consensus 123 Lg~d~iDl~~lh~~~~~ 139 (202)
-|+....++++.+.+..
T Consensus 186 ~gv~~P~VFLVS~~dl~ 202 (376)
T PF05049_consen 186 AGVSEPQVFLVSSFDLS 202 (376)
T ss_dssp TT-SS--EEEB-TTTTT
T ss_pred cCCCcCceEEEeCCCcc
Confidence 99999999999887654
No 118
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=33.06 E-value=2.1e+02 Score=21.39 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=56.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHhcCCCeeEEc
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~vr~iGvsn~~~~~l~~~~~~~~~~~~q 184 (202)
.+.+.|.+.+++.-+.+|++ ++++|-. . --++.+.+.+..+ +|.|-.=|--++..-.|..++......++.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-~~~~QSN--~----EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK13015 26 ETLADVEALCRAAAEALGLE-VEFRQSN--H----EGELIDWIHEARGDVAGIVINPGAYTHTSVAIRDALAALELPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC--c----HHHHHHHHHHhhhcCCEEEEcchHHhhhHHHHHHHHHcCCCCEEE
Confidence 47889999999999999975 6666632 1 1267777777754 356655566666677788888777777888
Q ss_pred ccCCccccc
Q 040066 185 MEWSLWTRE 193 (202)
Q Consensus 185 ~~~n~~~~~ 193 (202)
+..+=.+.+
T Consensus 99 VHiSNi~aR 107 (146)
T PRK13015 99 VHISNVHAR 107 (146)
T ss_pred EEcCCcccc
Confidence 887755543
No 119
>PF15221 LEP503: Lens epithelial cell protein LEP503
Probab=32.79 E-value=25 Score=21.47 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=16.5
Q ss_pred ceecCCCCccccceeeecc
Q 040066 11 RVKLGGQGFEVSKLGFGCM 29 (202)
Q Consensus 11 ~~~lg~~g~~vs~lg~Gt~ 29 (202)
.+.|+.+|+.||.+-+||.
T Consensus 17 ~~~l~dtglrvpv~KmGtg 35 (61)
T PF15221_consen 17 GRALRDTGLRVPVIKMGTG 35 (61)
T ss_pred cccccccccCCceeeecch
Confidence 5578999999999999884
No 120
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=32.63 E-value=2.7e+02 Score=22.65 Aligned_cols=26 Identities=19% Similarity=0.190 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcC
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTAD 63 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (202)
..+.++..++++...+.||+.++...
T Consensus 18 ~~s~~~k~~i~~~L~~~Gv~~IEvG~ 43 (262)
T cd07948 18 FFDTEDKIEIAKALDAFGVDYIELTS 43 (262)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 35678889999999999999999864
No 121
>COG1679 Predicted aconitase [General function prediction only]
Probab=32.49 E-value=3.4e+02 Score=23.71 Aligned_cols=104 Identities=13% Similarity=0.024 Sum_probs=62.2
Q ss_pred HHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCC--CC--cccCCCHHHHHHHHHHHHhH
Q 040066 47 IIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDM--SD--VVVKGTPEYVRACCEASLKR 122 (202)
Q Consensus 47 ~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~--~~--~~~~~~~~~i~~~~~~sL~~ 122 (202)
++-.+...||-+|.-+..-. ..+-+.+|.++..-..--++.+..+.|..... .+ ..+....+.+.++.++. +
T Consensus 209 ~~G~~~~d~IP~~~~~~~p~--~d~lKalgAA~atsgavam~HvegvTPE~~~~~~~d~~e~i~i~~~d~~da~~~l-~- 284 (403)
T COG1679 209 LAGEAAGDGIPYFRLALFPS--EDELKALGAAMATSGAVAMYHVEGVTPEARALAFGDKAEKIEIEREDIDDAWERL-N- 284 (403)
T ss_pred HHHHhccCCCCeeccCCCCC--HHHHHHHHHHHhhcCceeEEEecCCCcccccccccccCceeeeeHHHHHHHHHHh-h-
Confidence 55666788999999444322 44557889998764444566666666544211 01 11123344444433332 2
Q ss_pred cCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcC
Q 040066 123 LDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEG 156 (202)
Q Consensus 123 Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G 156 (202)
.+-+.+|++.+-+|.. +++++.+.++.|+..+
T Consensus 285 ~~~~epdli~iGcPHa--S~~E~~~la~~l~~r~ 316 (403)
T COG1679 285 TADGEPDLIALGCPHA--SLEELRRLAELLKGRK 316 (403)
T ss_pred cCCCCCCEEEeCCCCC--CHHHHHHHHHHHhccC
Confidence 4445899999999874 4667776777777666
No 122
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=32.34 E-value=3.4e+02 Score=26.42 Aligned_cols=68 Identities=13% Similarity=0.087 Sum_probs=50.9
Q ss_pred CHHHHHHHHHHHHhHcCC--------------------------CcccEEEeecCCCCCCH---HHHHHHHHHHHHcCCc
Q 040066 108 TPEYVRACCEASLKRLDV--------------------------EYIDLYYQHRVDTTIPI---EDTMGELKKLVEEGKI 158 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~--------------------------d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~v 158 (202)
....+.+.++..|+.+|. ....++++..|....|. ..+|+.+.++++.|+
T Consensus 671 ~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~- 749 (885)
T KOG0059|consen 671 PRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGK- 749 (885)
T ss_pred ChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCC-
Confidence 345677777777776654 23567777777766554 479999999999999
Q ss_pred cEEEecCCCHHHHHHHhcC
Q 040066 159 KYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 159 r~iGvsn~~~~~l~~~~~~ 177 (202)
+|=+.+|+-++.+.+..+
T Consensus 750 -aiiLTSHsMeE~EaLCtR 767 (885)
T KOG0059|consen 750 -AIILTSHSMEEAEALCTR 767 (885)
T ss_pred -EEEEEcCCHHHHHHHhhh
Confidence 888999998888877543
No 123
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.28 E-value=2.5e+02 Score=22.09 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=31.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP 83 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~ 83 (202)
.+.+++.++.+..++.|++.++.+..-.. +.+.+.+..++.+
T Consensus 17 ~~~e~a~~~~~al~~~Gi~~iEit~~t~~---a~~~i~~l~~~~~ 58 (204)
T TIGR01182 17 DDVDDALPLAKALIEGGLRVLEVTLRTPV---ALDAIRLLRKEVP 58 (204)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCcc---HHHHHHHHHHHCC
Confidence 36799999999999999999998764443 5666666655544
No 124
>PLN02923 xylose isomerase
Probab=32.16 E-value=2.1e+02 Score=25.46 Aligned_cols=47 Identities=19% Similarity=0.230 Sum_probs=30.7
Q ss_pred HHHhHcCCCcccEEEeecCCCCC---C-------HHHHHHHHHHH-HHcCCccEEEecC-CC
Q 040066 118 ASLKRLDVEYIDLYYQHRVDTTI---P-------IEDTMGELKKL-VEEGKIKYIGLSE-AS 167 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~---~-------~~~~~~~l~~l-~~~G~vr~iGvsn-~~ 167 (202)
+-+++||+.| |.+|..|-.. . ++++.+.+.+. .+.|..--+|..| |+
T Consensus 130 Ef~~kLG~~y---~cFHD~Dl~Peg~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFs 188 (478)
T PLN02923 130 EFLKKLGVDR---WCFHDRDIAPDGKTLEESNANLDEVVALAKELQEGTKIRPLWGTAQLFK 188 (478)
T ss_pred HHHHHhCCCe---EccCccccCCCCCCHHHHHhhHHHHHHHHHHHhHhhCceeeeecccccc
Confidence 3677888655 6779764321 1 34667777654 4558888889888 64
No 125
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.14 E-value=1.9e+02 Score=22.88 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQL 82 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~ 82 (202)
.+.+++.++.+..++.|++.++.+..-.. +.+.+.+.-++.
T Consensus 22 ~~~~~a~~~~~al~~~Gi~~iEit~~~~~---a~~~i~~l~~~~ 62 (213)
T PRK06552 22 ESKEEALKISLAVIKGGIKAIEVTYTNPF---ASEVIKELVELY 62 (213)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEECCCcc---HHHHHHHHHHHc
Confidence 36799999999999999999998765443 566666554444
No 126
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=32.00 E-value=2.7e+02 Score=22.44 Aligned_cols=104 Identities=24% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh--cCCCCCEEEEeccCcccC-----------CCC----
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK--QLPREKVQLATKFGIVKF-----------DMS---- 101 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~--~~~r~~~~i~tK~~~~~~-----------~~~---- 101 (202)
.+.++..+++++|-..|.+|+|-|.. -+++..+.. .+| +..+-+-+... +-+
T Consensus 24 Fd~~~V~~i~~AA~~ggAt~vDIAad-------p~LV~~~~~~s~lP----ICVSaVep~~f~~aV~AGAdliEIGNfDs 92 (242)
T PF04481_consen 24 FDAESVAAIVKAAEIGGATFVDIAAD-------PELVKLAKSLSNLP----ICVSAVEPELFVAAVKAGADLIEIGNFDS 92 (242)
T ss_pred cCHHHHHHHHHHHHccCCceEEecCC-------HHHHHHHHHhCCCC----eEeecCCHHHHHHHHHhCCCEEEecchHH
Confidence 47789999999999999999999852 233333221 222 12222211100 000
Q ss_pred --CcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 040066 102 --DVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGK 157 (202)
Q Consensus 102 --~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 157 (202)
.....++.+.|.+-.++..+.|= |..+.--.+...+++++.+--++|++.|-
T Consensus 93 FY~qGr~f~a~eVL~Lt~~tR~LLP----~~~LsVTVPHiL~ld~Qv~LA~~L~~~Ga 146 (242)
T PF04481_consen 93 FYAQGRRFSAEEVLALTRETRSLLP----DITLSVTVPHILPLDQQVQLAEDLVKAGA 146 (242)
T ss_pred HHhcCCeecHHHHHHHHHHHHHhCC----CCceEEecCccccHHHHHHHHHHHHHhCC
Confidence 01134567778777777777773 22222223334567788877778877664
No 127
>PRK08392 hypothetical protein; Provisional
Probab=31.61 E-value=2.5e+02 Score=21.88 Aligned_cols=105 Identities=11% Similarity=0.054 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHcCCCeeeCcCCcCCC--ChhHHHHHHH--HhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHH
Q 040066 43 VGISIIKHAFDQGITFFDTADVYGPN--NANELLVGKA--LKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEA 118 (202)
Q Consensus 43 ~~~~~l~~A~~~Gi~~~DtA~~Yg~~--g~~e~~lg~~--l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (202)
...++++.|.+.|++.+=.++|...+ ..-+..+.+. +++..+=++++..=+..... . .+..++
T Consensus 15 ~~~e~v~~A~~~Gl~~i~iTdH~~~~~~~~~~~y~~~i~~l~~~~~i~il~GiE~~~~~~---------~----~~~~~~ 81 (215)
T PRK08392 15 SVRDNIAEAERKGLRLVGISDHIHYFTPSKFNAYINEIRQWGEESEIVVLAGIEANITPN---------G----VDITDD 81 (215)
T ss_pred CHHHHHHHHHHcCCCEEEEccCCCccchhhHHHHHHHHHHHhhccCceEEEeEEeeecCC---------c----chhHHH
Confidence 35688999999999999888876421 0111222211 11111112222222221110 1 122233
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEe
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGv 163 (202)
.++. .|++ +..+|.+......++-++.+.++.+.+.+.-+|=
T Consensus 82 ~~~~--~D~v-I~SvH~~~~~~~~~~Y~~~~~~~~~~~~~dvlgH 123 (215)
T PRK08392 82 FAKK--LDYV-IASVHEWFGRPEHHEYIELVKLALMDENVDIIGH 123 (215)
T ss_pred HHhh--CCEE-EEEeecCcCCcHHHHHHHHHHHHHhcCCCCEEeC
Confidence 3443 4555 6677854332334566778888888887666654
No 128
>cd00466 DHQase_II Dehydroquinase (DHQase), type II. Dehydroquinase (or 3-dehydroquinate dehydratase) catalyzes the reversible dehydration of 3-dehydroquinate to form 3-dehydroshikimate. This reaction is part of two metabolic pathways: the biosynthetic shikimate pathway and the catabolic quinate pathway. There are two types of DHQases, which are distinct from each other in amino acid sequence and three-dimensional structure. Type I enzymes usually catalyze the biosynthetic reaction using a syn elimination mechanism. In contrast, type II enzymes, found in the quinate pathway of fungi and in the shikimate pathway of many bacteria, are dodecameric enzymes that employ an anti elimination reaction mechanism.
Probab=31.49 E-value=1.9e+02 Score=21.46 Aligned_cols=80 Identities=15% Similarity=0.172 Sum_probs=56.5
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHhcCCCeeEEc
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~vr~iGvsn~~~~~l~~~~~~~~~~~~q 184 (202)
.+.+.|.+.+++.-+.+|++ ++++|-.. --++.+.+.+..+ +|.|-.=|--++..-.|..++......++.
T Consensus 24 ~tl~~i~~~l~~~a~~~g~~-v~~~QSN~------Egelid~I~~a~~~~dgiIINpga~THtSvAi~DAl~~~~~P~VE 96 (140)
T cd00466 24 TTLADIEALLRELAAELGVE-VEFFQSNH------EGELIDWIHEARDGADGIIINPGAYTHTSIALRDALAAVSIPVIE 96 (140)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeCc------HHHHHHHHHHhhccCcEEEEcchHHHHHHHHHHHHHHcCCCCEEE
Confidence 47899999999999999975 67766321 1267777777754 455555565666667788888877777888
Q ss_pred ccCCccccc
Q 040066 185 MEWSLWTRE 193 (202)
Q Consensus 185 ~~~n~~~~~ 193 (202)
+..|=.+.+
T Consensus 97 VHiSNi~aR 105 (140)
T cd00466 97 VHISNIHAR 105 (140)
T ss_pred EecCCcccc
Confidence 888755543
No 129
>PRK14465 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=31.19 E-value=3.4e+02 Score=23.25 Aligned_cols=91 Identities=9% Similarity=-0.042 Sum_probs=57.2
Q ss_pred cccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc-C---CccEEEecCCCH-HHHHHHhcC
Q 040066 103 VVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEE-G---KIKYIGLSEASP-DTIRRAHAV 177 (202)
Q Consensus 103 ~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~-G---~vr~iGvsn~~~-~~l~~~~~~ 177 (202)
....++...|..++-..-+.++.....++++---++...++.+.++++.+++. | .-+.|-||+... ..+.++...
T Consensus 129 ~~rnlta~EI~~qv~~~~~~~~~~~~niVFmGmGEPL~N~d~V~~~~~~l~~~~~~~~~~r~itvST~G~~~~i~~l~~~ 208 (342)
T PRK14465 129 FQGNLKAHEIVDQVLQVEKIVGDRATNVVFMGMGEPMHNYFNVIRAASILHDPDAFNLGAKRITISTSGVVNGIRRFIEN 208 (342)
T ss_pred ccCCCCHHHHHHHHHHHHHhcCCCceEEEEEcCCcchhhHHHHHHHHHHHhChhhhcCCCCeEEEeCCCchHHHHHHHhh
Confidence 33456788888888776666664444455544345556678889998888765 2 356888888664 556666543
Q ss_pred CCeeEEcccCCccccc
Q 040066 178 HPVTALQMEWSLWTRE 193 (202)
Q Consensus 178 ~~~~~~q~~~n~~~~~ 193 (202)
.....+.+..|.-+.+
T Consensus 209 ~~~~~LaiSLhA~~~e 224 (342)
T PRK14465 209 KEPYNFAISLNHPDPN 224 (342)
T ss_pred ccCceEEEEecCCChh
Confidence 3233566666654443
No 130
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=30.99 E-value=3.2e+02 Score=23.09 Aligned_cols=140 Identities=15% Similarity=0.153 Sum_probs=71.7
Q ss_pred CCHHHHHHHH-------HHHHHcCCCeeeCcCCcCC-----------------CChhH---HHHHHHHhcC---CCCCEE
Q 040066 39 VPVEVGISII-------KHAFDQGITFFDTADVYGP-----------------NNANE---LLVGKALKQL---PREKVQ 88 (202)
Q Consensus 39 ~~~~~~~~~l-------~~A~~~Gi~~~DtA~~Yg~-----------------~g~~e---~~lg~~l~~~---~r~~~~ 88 (202)
++.++..+++ +.|.++|+..++--..+|. +|.-| +++-+.++.+ -.+++.
T Consensus 139 mt~~eI~~ii~~f~~AA~~A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~ 218 (341)
T PF00724_consen 139 MTEEEIEEIIEDFAQAARRAKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFP 218 (341)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCce
Confidence 4556654443 4567899999986544443 24333 2222333221 124667
Q ss_pred EEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEE---eecCC--CCCC----HHHHHHHHHHHHHcCCcc
Q 040066 89 LATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYY---QHRVD--TTIP----IEDTMGELKKLVEEGKIK 159 (202)
Q Consensus 89 i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~---lh~~~--~~~~----~~~~~~~l~~l~~~G~vr 159 (202)
|.-|+.+.....++. +.+.. ..+-..++.+++|.+++.. +|+.. ...+ ..-.....+..++.-++-
T Consensus 219 v~~Rls~~~~~~~g~----~~~e~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~~~p 293 (341)
T PF00724_consen 219 VGVRLSPDDFVEGGI----TLEET-IEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAVKIP 293 (341)
T ss_dssp EEEEEETTCSSTTSH----HSHHH-HHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHHSSE
T ss_pred EEEEEeeecccCCCC----chHHH-HHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhcCce
Confidence 888887654332221 12222 3345667788888877532 24321 1111 111122334444444566
Q ss_pred EEEecCCCHHH-HHHHhcCCCeeEE
Q 040066 160 YIGLSEASPDT-IRRAHAVHPVTAL 183 (202)
Q Consensus 160 ~iGvsn~~~~~-l~~~~~~~~~~~~ 183 (202)
-|++..++..+ .++++.....+.+
T Consensus 294 vi~~G~i~~~~~ae~~l~~g~~DlV 318 (341)
T PF00724_consen 294 VIGVGGIRTPEQAEKALEEGKADLV 318 (341)
T ss_dssp EEEESSTTHHHHHHHHHHTTSTSEE
T ss_pred EEEEeeecchhhhHHHHhcCCceEe
Confidence 78999977554 7788777655554
No 131
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=30.81 E-value=3.2e+02 Score=24.68 Aligned_cols=100 Identities=7% Similarity=0.079 Sum_probs=54.9
Q ss_pred hHHHHHHHHhc----CCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCC----H
Q 040066 71 NELLVGKALKQ----LPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIP----I 142 (202)
Q Consensus 71 ~e~~lg~~l~~----~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~----~ 142 (202)
+++.+-+++++ .+++-++|.|-. ..+-|-+.++...+.++.+.++++.++.|..... .
T Consensus 69 ~~~~L~~aI~~~~~~~~P~~I~V~sTC--------------~selIGdDi~~~~~~~~~~~~pvi~v~t~gf~g~~~~g~ 134 (511)
T TIGR01278 69 SQTRLVDTVRRVDDRFKPDLIVVTPSC--------------TSSLLQEDLGNLAAAAGLDKSKVIVADVNAYRRKENQAA 134 (511)
T ss_pred hHHHHHHHHHHHHHhcCCCEEEEeCCC--------------hHHHhccCHHHHHHHhccCCCcEEEecCCCcccchhHHH
Confidence 45666666654 223334454433 2344444455555555544688999998865433 2
Q ss_pred HHHHHHHHH-H----------HHcCCccEEEecCC------CHHHHHHHhcCCCeeEEc
Q 040066 143 EDTMGELKK-L----------VEEGKIKYIGLSEA------SPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 143 ~~~~~~l~~-l----------~~~G~vr~iGvsn~------~~~~l~~~~~~~~~~~~q 184 (202)
+.++.++-+ + .+.+.|--||.++. +..+|+++++...+.++.
T Consensus 135 ~~al~~lv~~~~~~~~~~~~~~~~~~VNIiG~~~l~~~~~~D~~elkrlL~~lGi~vn~ 193 (511)
T TIGR01278 135 DRTLTQLVRRFAKEQPKPGRTTEKPSVNLLGPASLGFHHRHDLIELRRLLKTLGIEVNV 193 (511)
T ss_pred HHHHHHHHHHHHhccccccccCCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHCCCeEEE
Confidence 223322221 1 12356888998863 335677777776666654
No 132
>PLN02775 Probable dihydrodipicolinate reductase
Probab=30.69 E-value=3.2e+02 Score=22.82 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=43.5
Q ss_pred HHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~ 177 (202)
+++.|..+..++.|++.+..-. .+.+.+.++.+.+.|+---+|.+.|+.++++++.+.
T Consensus 68 l~~~l~~~~~~~~~~VvIDFT~----P~a~~~~~~~~~~~g~~~VvGTTG~~~e~l~~~~~~ 125 (286)
T PLN02775 68 REAVLSSVKAEYPNLIVVDYTL----PDAVNDNAELYCKNGLPFVMGTTGGDRDRLLKDVEE 125 (286)
T ss_pred HHHHHHHhhccCCCEEEEECCC----hHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHhc
Confidence 4455555545678877776533 457788888899999988999999999988877654
No 133
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=30.01 E-value=1.9e+02 Score=23.94 Aligned_cols=58 Identities=17% Similarity=0.117 Sum_probs=43.5
Q ss_pred HHHHHhHcCCCcccEEEeecCCCCCCH---HHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhc
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDTTIPI---EDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHA 176 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~ 176 (202)
+.-.+.-++ ..++++|.-|....|. .++|+.|.++.++|. +.|=+|+|..+.++.+.+
T Consensus 145 l~ia~aL~~--~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~-~tvlissH~l~e~~~~~d 205 (293)
T COG1131 145 LSIALALLH--DPELLILDEPTSGLDPESRREIWELLRELAKEGG-VTILLSTHILEEAEELCD 205 (293)
T ss_pred HHHHHHHhc--CCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCC-cEEEEeCCcHHHHHHhCC
Confidence 333344443 3588888888776553 478999999999986 578899999999888744
No 134
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=29.78 E-value=2.6e+02 Score=21.46 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK 80 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (202)
.+.+++.++++.+++.|++++.-...-.. ..+.+..+.+
T Consensus 21 ~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~---~~e~~~~~~~ 59 (187)
T PRK07455 21 PDLELGLQMAEAVAAGGMRLIEITWNSDQ---PAELISQLRE 59 (187)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCC---HHHHHHHHHH
Confidence 36799999999999999999997654443 5556555543
No 135
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=29.63 E-value=1.7e+02 Score=22.53 Aligned_cols=65 Identities=9% Similarity=0.130 Sum_probs=39.8
Q ss_pred hHcCCCcccEEEeecCCCCCCH-HHHHHHHHHHHHcCCccEEEec-CCCHHHHHHHhcCCCeeEEcccCC
Q 040066 121 KRLDVEYIDLYYQHRVDTTIPI-EDTMGELKKLVEEGKIKYIGLS-EASPDTIRRAHAVHPVTALQMEWS 188 (202)
Q Consensus 121 ~~Lg~d~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~vr~iGvs-n~~~~~l~~~~~~~~~~~~q~~~n 188 (202)
.++|++++-+..- +...-.+ .+....|.++... .+..+||- |-+.+.+.++.....++.+|+.-+
T Consensus 16 ~~~Gvd~ig~i~~--~~s~R~v~~~~a~~l~~~~~~-~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~ 82 (203)
T cd00405 16 AEAGADAIGFIFA--PKSPRYVSPEQAREIVAALPP-FVKRVGVFVNEDLEEILEIAEELGLDVVQLHGD 82 (203)
T ss_pred HHcCCCEEEEecC--CCCCCCCCHHHHHHHHHhCCC-CCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCC
Confidence 4677655544322 2222223 3445555555443 35678875 677788888888888899998866
No 136
>COG1809 (2R)-phospho-3-sulfolactate synthase (PSL synthase, CoM biosynthesis) [Coenzyme transport and metabolism]
Probab=29.37 E-value=2e+02 Score=23.28 Aligned_cols=84 Identities=11% Similarity=0.092 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeC----cCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDT----ADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~Dt----A~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
.+.++.++-++.+-+.|+.+|=- --.|++ +.-+..+-++ +++.-+-+-|++=.-+.... .....|++
T Consensus 57 i~kd~V~ekid~y~e~~i~v~pGGtlfe~a~~~-~kvdeyl~e~-~~lGfe~iEIS~G~i~m~~e-------ek~~lIe~ 127 (258)
T COG1809 57 IDKDQVKEKIDMYKENDIYVFPGGTLFEIAYSQ-DKVDEYLNEA-KELGFEAIEISNGTIPMSTE-------EKCRLIER 127 (258)
T ss_pred ccHHHHHHHHHHHHHcCceecCCceEEEeehhc-ccHHHHHHHH-HHcCccEEEecCCeeecchH-------HHHHHHHH
Confidence 57888999999998876655421 112444 4455555444 23334445555544332211 02345667
Q ss_pred HHHHH---HhHcCCCcccEE
Q 040066 115 CCEAS---LKRLDVEYIDLY 131 (202)
Q Consensus 115 ~~~~s---L~~Lg~d~iDl~ 131 (202)
++++- |..+|...-|..
T Consensus 128 a~d~Gf~vlsEvGkk~~e~~ 147 (258)
T COG1809 128 AVDEGFMVLSEVGKKDPESD 147 (258)
T ss_pred HHhcccEEehhhcccCcchh
Confidence 77763 344565433433
No 137
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=29.07 E-value=2.1e+02 Score=20.83 Aligned_cols=53 Identities=23% Similarity=0.232 Sum_probs=33.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+.+.+...+++..+.- .... +.+. .|...++..+.+.|+.+++.| +..||+.+
T Consensus 82 ~~~~L~~~L~~~~~~~--~~~~-V~I~-aD~~~~~~~vv~vmd~l~~aG-~~~v~l~t 134 (141)
T PRK11267 82 TDETMITALDALTEGK--KDTT-IFFR-ADKTVDYETLMKVMDTLHQAG-YLKIGLVG 134 (141)
T ss_pred cHHHHHHHHHHHHhcC--CCce-EEEE-cCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4555555555544322 1122 3333 466788999999999999999 55688765
No 138
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=28.69 E-value=1e+02 Score=23.20 Aligned_cols=47 Identities=15% Similarity=0.151 Sum_probs=34.9
Q ss_pred CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHh
Q 040066 126 EYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAH 175 (202)
Q Consensus 126 d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 175 (202)
+.=|++.+-..... -.++.++++.+++.| ++-|+|++.....+.+..
T Consensus 100 ~~~Dv~I~iS~SG~--t~~~i~~~~~ak~~G-a~vI~IT~~~~s~La~~a 146 (177)
T cd05006 100 QPGDVLIGISTSGN--SPNVLKALEAAKERG-MKTIALTGRDGGKLLELA 146 (177)
T ss_pred CCCCEEEEEeCCCC--CHHHHHHHHHHHHCC-CEEEEEeCCCCCchhhhC
Confidence 34477777654433 358999999999998 889999998766666653
No 139
>PRK08609 hypothetical protein; Provisional
Probab=28.61 E-value=4.7e+02 Score=24.06 Aligned_cols=105 Identities=13% Similarity=0.183 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCCeeeCcCCcCCC----ChhHHHHHHH------Hhc-CCCCCEEEEeccCcccCCCCCcccCCCHHHH
Q 040066 44 GISIIKHAFDQGITFFDTADVYGPN----NANELLVGKA------LKQ-LPREKVQLATKFGIVKFDMSDVVVKGTPEYV 112 (202)
Q Consensus 44 ~~~~l~~A~~~Gi~~~DtA~~Yg~~----g~~e~~lg~~------l~~-~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i 112 (202)
..++++.|.+.|++.+=.++|+... +.+...+-.. +++ .+.=++++..=+..... ..
T Consensus 351 leemv~~A~~~Gl~~i~iTdH~~~~~~~~~~~~~~l~~~~~ei~~l~~~~~~i~Il~GiEv~i~~~--------g~---- 418 (570)
T PRK08609 351 IEEMVEACIAKGYEYMAITDHSQYLKVANGLTEERLLEQAEEIKALNEKYPEIDILSGIEMDILPD--------GS---- 418 (570)
T ss_pred HHHHHHHHHHCCCCEEEEeCCCCCccccCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeecCC--------cc----
Confidence 4568999999999999999987420 1122222222 221 11113333333322110 01
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEec
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLS 164 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvs 164 (202)
..-.+..|+. .||+ +..+|++.. .+.+++++.+.++.+.|.+--||=-
T Consensus 419 ~d~~~~~L~~--~D~v-I~SvH~~~~-~~~~~~~~~l~~a~~~~~~dILaHp 466 (570)
T PRK08609 419 LDYDDEVLAE--LDYV-IAAIHSSFS-QSEEEIMKRLENACRNPYVRLIAHP 466 (570)
T ss_pred hhhcHHHHHh--hCEE-EEEeecCCC-CCHHHHHHHHHHHhcCCCceEEECC
Confidence 1112223333 3554 666676432 3456677778888877776666543
No 140
>KOG0173 consensus 20S proteasome, regulatory subunit beta type PSMB7/PSMB10/PUP1 [Posttranslational modification, protein turnover, chaperones]
Probab=28.48 E-value=54 Score=26.76 Aligned_cols=24 Identities=21% Similarity=0.313 Sum_probs=21.1
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCC
Q 040066 34 IYNDPVPVEVGISIIKHAFDQGIT 57 (202)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi~ 57 (202)
.|....+++++.+++..|+.+||-
T Consensus 178 r~k~dlt~eea~~Lv~eAi~AGi~ 201 (271)
T KOG0173|consen 178 RWKPDLTKEEAIKLVCEAIAAGIF 201 (271)
T ss_pred hcCcccCHHHHHHHHHHHHHhhhc
Confidence 467788999999999999999974
No 141
>PF01527 HTH_Tnp_1: Transposase; InterPro: IPR002514 Transposase proteins are necessary for efficient DNA transposition. This family consists of various Escherichia coli insertion elements and other bacterial transposases some of which are members of the IS3 family. This region includes a helix-turn-helix motif (HTH) at the N terminus followed by a leucine zipper (LZ) motif. The LZ motif has been shown to mediate oligomerisation of the transposase components in IS911 []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated; PDB: 2JN6_A 2RN7_A.
Probab=28.41 E-value=19 Score=22.92 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQL 82 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~ 82 (202)
.+++.-.++|..++..|.+.-+.|..||- +...|..|++..
T Consensus 7 ys~e~K~~~v~~~~~~g~sv~~va~~~gi---~~~~l~~W~~~~ 47 (76)
T PF01527_consen 7 YSPEFKLQAVREYLESGESVSEVAREYGI---SPSTLYNWRKQY 47 (76)
T ss_dssp --HHHHHHHHHHHHHHHCHHHHHHHHHTS----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCceEeeeccccc---ccccccHHHHHH
Confidence 46778889999999999999999999998 999999999863
No 142
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=28.17 E-value=2.8e+02 Score=21.40 Aligned_cols=131 Identities=17% Similarity=0.106 Sum_probs=76.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEA 118 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (202)
...++..++++.|.+.|+.-+-+.+.+- +. ..+.++. ..+.+.+=.+++... .+.+....++++
T Consensus 14 ~t~~~i~~~~~~a~~~~~~av~v~p~~v-----~~-~~~~l~~---~~~~v~~~~~fp~g~-------~~~~~k~~eve~ 77 (203)
T cd00959 14 ATEEDIRKLCDEAKEYGFAAVCVNPCFV-----PL-AREALKG---SGVKVCTVIGFPLGA-------TTTEVKVAEARE 77 (203)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEcHHHH-----HH-HHHHcCC---CCcEEEEEEecCCCC-------CcHHHHHHHHHH
Confidence 4678899999999998877777654222 22 3333332 346666666543322 134555666887
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHc--CCccE--EEecCCCHHHHHHHhcC---CCeeEEccc
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEE--GKIKY--IGLSEASPDTIRRAHAV---HPVTALQME 186 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~--G~vr~--iGvsn~~~~~l~~~~~~---~~~~~~q~~ 186 (202)
+++ +|.|-+|++.--..-...+.+...+.+.++++. |+.-. +...-.+.+++..+.+. ...+++...
T Consensus 78 A~~-~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTs 151 (203)
T cd00959 78 AIA-DGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTS 151 (203)
T ss_pred HHH-cCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcC
Confidence 776 599999987654322223445666666666665 44322 34444556666665432 355666666
No 143
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=27.84 E-value=2e+02 Score=24.74 Aligned_cols=48 Identities=17% Similarity=0.187 Sum_probs=31.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC--CChhHHHHHHHH
Q 040066 32 TGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGP--NNANELLVGKAL 79 (202)
Q Consensus 32 ~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~g~~e~~lg~~l 79 (202)
|.++..+.+.+...++++.+.+.|++.|=-++..|. |....+++....
T Consensus 187 g~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~ 236 (347)
T PLN02746 187 GCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVM 236 (347)
T ss_pred cCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHH
Confidence 334556678899999999999999998844444443 233334444443
No 144
>COG0820 Predicted Fe-S-cluster redox enzyme [General function prediction only]
Probab=27.66 E-value=4e+02 Score=22.97 Aligned_cols=117 Identities=15% Similarity=0.172 Sum_probs=72.0
Q ss_pred CCCEEEEeccCccc------CCCCCcccCCCHHHHHHHHHHHHhHcCCC---cccEEEeecC-CCCCCHHHHHHHHHHHH
Q 040066 84 REKVQLATKFGIVK------FDMSDVVVKGTPEYVRACCEASLKRLDVE---YIDLYYQHRV-DTTIPIEDTMGELKKLV 153 (202)
Q Consensus 84 r~~~~i~tK~~~~~------~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d---~iDl~~lh~~-~~~~~~~~~~~~l~~l~ 153 (202)
|.-+-|+|-+|+.- .+.++....++...|..|+....+.++.. .+.-+.+-.. ++...++.+..+++-+.
T Consensus 100 r~tlCVSsQvGC~~~C~FCaTg~~G~~RNLs~~EIv~Qv~~~~~~~~~~~~~~i~NVV~MGMGEPl~N~dnV~~a~~i~~ 179 (349)
T COG0820 100 RNTLCVSSQVGCPVGCTFCATGQGGLNRNLSAGEIVEQVLLAAKALGEDFGRRISNVVFMGMGEPLLNLDNVVKALEIIN 179 (349)
T ss_pred CceEEEecCCCcCCCCCeeccccccceeccCHHHHHHHHHHHHHhcCccccceeeeEEEecCCchhhhHHHHHHHHHhhc
Confidence 33456777776532 22234556788999999999999999863 3444444444 34455778888888776
Q ss_pred H-cCC---ccEEEecCCC-HHHHHHHhcCCCeeEEcccCCcccccccccccC
Q 040066 154 E-EGK---IKYIGLSEAS-PDTIRRAHAVHPVTALQMEWSLWTREIEDEIVP 200 (202)
Q Consensus 154 ~-~G~---vr~iGvsn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ll~ 200 (202)
+ .|. .|.|=||+-. ...|.++.+...-...++..|.-+...-..++|
T Consensus 180 ~~~G~~ls~R~iTvSTsGi~~~I~~l~~~~~~v~LAiSLHa~nd~lR~~L~P 231 (349)
T COG0820 180 DDEGLGLSKRRITVSTSGIVPRIRKLADEQLGVALAISLHAPNDELRDQLMP 231 (349)
T ss_pred CcccccccceEEEEecCCCchhHHHHHhhcCCeEEEEecCCCCHHHHhhhhc
Confidence 3 343 2677788765 456767664333345667777655443334444
No 145
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=27.54 E-value=1.1e+02 Score=21.57 Aligned_cols=43 Identities=21% Similarity=0.155 Sum_probs=37.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcC
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQL 82 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~ 82 (202)
...+.+.-.+++...++.|.+.-+.|..||- +...+..|.+..
T Consensus 11 r~ys~EfK~~aV~~~~~~g~sv~evA~e~gI---s~~tl~~W~r~y 53 (121)
T PRK09413 11 RRRTTQEKIAIVQQSFEPGMTVSLVARQHGV---AASQLFLWRKQY 53 (121)
T ss_pred CCCCHHHHHHHHHHHHcCCCCHHHHHHHHCc---CHHHHHHHHHHH
Confidence 3456777788999999999999999999998 999999999874
No 146
>PRK02399 hypothetical protein; Provisional
Probab=27.50 E-value=2.1e+02 Score=25.14 Aligned_cols=72 Identities=19% Similarity=0.284 Sum_probs=44.6
Q ss_pred HHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHhcCCC
Q 040066 114 ACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYI--------------GLSEASPDTIRRAHAVHP 179 (202)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~i--------------Gvsn~~~~~l~~~~~~~~ 179 (202)
.+++...++|.-...|++.+|.-... =++||+|+++|.+..+ |+-+..++.+..+.+..-
T Consensus 199 p~v~~~~~~Le~~GyEvlVFHATG~G------GraME~Li~~G~~~gVlDlTttEv~d~l~GGv~sagp~Rl~Aa~~~gI 272 (406)
T PRK02399 199 PCVQAAREELEARGYEVLVFHATGTG------GRAMEKLIDSGLIAGVLDLTTTEVCDELFGGVLAAGPDRLEAAARTGI 272 (406)
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCCCc------hHHHHHHHHcCCceEEEEcchHHHHHHHhCcCccCCccHHHHHHHcCC
Confidence 44555555554444699999965432 3689999999998654 555556667777765543
Q ss_pred eeE------EcccCCccc
Q 040066 180 VTA------LQMEWSLWT 191 (202)
Q Consensus 180 ~~~------~q~~~n~~~ 191 (202)
|-+ -++.|-+.+
T Consensus 273 P~Vvs~GalDmVnFg~~~ 290 (406)
T PRK02399 273 PQVVSPGALDMVNFGAPD 290 (406)
T ss_pred CEEecCCceeeeecCCcc
Confidence 322 345555544
No 147
>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family.
Probab=27.49 E-value=1.6e+02 Score=22.48 Aligned_cols=45 Identities=13% Similarity=0.264 Sum_probs=32.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC-CChhHHHHHHHHhc
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTADVYGP-NNANELLVGKALKQ 81 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~ 81 (202)
.+.++++.++.++...+.|++.+-.+-.++. +-..|+.+.+.+++
T Consensus 129 ~~ld~~~v~~~~~~l~~~gv~avAV~~~fS~~np~hE~~v~eii~e 174 (176)
T PF05378_consen 129 EPLDEDEVREALRELKDKGVEAVAVSLLFSYRNPEHEQRVAEIIRE 174 (176)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEECccCCCCHHHHHHHHHHHHh
Confidence 3467788888888888888888887665554 24467777777764
No 148
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.49 E-value=2.1e+02 Score=20.80 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+.+.+...++..+..- -+...+=..|...++..+.+.|+.+++.| +..+++.+
T Consensus 86 ~~~~L~~~l~~~~~~~----~~~~V~i~aD~~~~~~~vv~vmd~~k~aG-~~~v~l~t 138 (141)
T PRK11024 86 PEEQVVAEAKSRFKAN----PKTVFLIGGAKDVPYDEIIKALNLLHSAG-VKSVGLMT 138 (141)
T ss_pred CHHHHHHHHHHHHhhC----CCceEEEEcCCCCCHHHHHHHHHHHHHcC-CCeEEEEe
Confidence 4455555555544422 23323334567788999999999999998 45577653
No 149
>TIGR02351 thiH thiazole biosynthesis protein ThiH. Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.
Probab=27.32 E-value=4e+02 Score=22.82 Aligned_cols=101 Identities=11% Similarity=0.045 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCC--CEEEEeccCcccCCCCCcccCCCHHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPRE--KVQLATKFGIVKFDMSDVVVKGTPEYVRACC 116 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~--~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~ 116 (202)
.+.++..+.++.+.+.|++.|--...-+.....-..+.+.++..... .+-| .+.+ ++.+.+
T Consensus 103 Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~eii~~Ik~~~p~i~I--ei~~-----------lt~e~~---- 165 (366)
T TIGR02351 103 LNEEEIEREIEAIKKSGFKEILLVTGESEKAAGVEYIAEAIKLAREYFSSLAI--EVQP-----------LNEEEY---- 165 (366)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCcccc--cccc-----------CCHHHH----
Confidence 46889999999999999998864322221011123445555442110 1111 1111 244444
Q ss_pred HHHHhHcCCCcccEEEe----------ecCCCCCCHHHHHHHHHHHHHcCC
Q 040066 117 EASLKRLDVEYIDLYYQ----------HRVDTTIPIEDTMGELKKLVEEGK 157 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~l----------h~~~~~~~~~~~~~~l~~l~~~G~ 157 (202)
+.|+..|++++-+.+= |......++++.+++++.+++.|.
T Consensus 166 -~~Lk~aGv~r~~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~ 215 (366)
T TIGR02351 166 -KKLVEAGLDGVTVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGM 215 (366)
T ss_pred -HHHHHcCCCEEEEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCC
Confidence 5677888876655332 111123357888999999999885
No 150
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=26.97 E-value=3.1e+02 Score=22.37 Aligned_cols=51 Identities=22% Similarity=0.187 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCc
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTT-IPIEDTMGELKKLVEEGKI 158 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~v 158 (202)
+.+......+-+.+.+++++|-+=.+-+.+.. .+.-+++++.|.|+++|-+
T Consensus 81 taeEAv~tArlARE~~~t~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~ 132 (262)
T COG2022 81 TAEEAVRTARLAREALGTNWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFV 132 (262)
T ss_pred CHHHHHHHHHHHHHHccCCeEEEEEecCCcccCCChHHHHHHHHHHHhCCCE
Confidence 55666666777888899998888777666554 4467999999999999975
No 151
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=26.90 E-value=2.3e+02 Score=24.10 Aligned_cols=60 Identities=17% Similarity=0.215 Sum_probs=34.0
Q ss_pred ccceeeecccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh
Q 040066 21 VSKLGFGCMGLTG----IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK 80 (202)
Q Consensus 21 vs~lg~Gt~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (202)
|.++.+|.-++.. ..+...+.+++.++++.+.+.|+..+-.--.||-|+.+.+.+-+.++
T Consensus 111 v~risiGvqS~~~~~l~~lgR~~~~~~~~~ai~~l~~~G~~~v~~dli~GlPgqt~~~~~~~l~ 174 (360)
T TIGR00539 111 INRLSLGVQSFRDDKLLFLGRQHSAKNIAPAIETALKSGIENISLDLMYGLPLQTLNSLKEELK 174 (360)
T ss_pred CCEEEEecccCChHHHHHhCCCCCHHHHHHHHHHHHHcCCCeEEEeccCCCCCCCHHHHHHHHH
Confidence 4466666544432 12344566777777777777777544333356655666665555544
No 152
>PLN02389 biotin synthase
Probab=26.87 E-value=4.2e+02 Score=22.96 Aligned_cols=102 Identities=18% Similarity=0.183 Sum_probs=55.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCc-CCCCh--hHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVY-GPNNA--NELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRAC 115 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Y-g~~g~--~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (202)
.+.++..+.++.+.+.|++.|--.... +..++ .-..+-+.++......+.|+...+.. +.+.+
T Consensus 116 Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G~l-----------~~E~l--- 181 (379)
T PLN02389 116 MSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLGML-----------EKEQA--- 181 (379)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCCCC-----------CHHHH---
Confidence 578899999999999999998642211 11011 11244444554332234454333321 22333
Q ss_pred HHHHHhHcCCCcccEEEeec-C------CCCCCHHHHHHHHHHHHHcCC
Q 040066 116 CEASLKRLDVEYIDLYYQHR-V------DTTIPIEDTMGELKKLVEEGK 157 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~-~------~~~~~~~~~~~~l~~l~~~G~ 157 (202)
+.|+..|+|++-.-+ .. + -....+++.++.++.+++.|.
T Consensus 182 --~~LkeAGld~~~~~L-eTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi 227 (379)
T PLN02389 182 --AQLKEAGLTAYNHNL-DTSREYYPNVITTRSYDDRLETLEAVREAGI 227 (379)
T ss_pred --HHHHHcCCCEEEeee-cCChHHhCCcCCCCCHHHHHHHHHHHHHcCC
Confidence 345555776543311 11 0 112347789999999999986
No 153
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=26.67 E-value=3.8e+02 Score=22.36 Aligned_cols=133 Identities=16% Similarity=0.147 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCC---ChhHHHHHHHHhcCC-CCCEEEEeccCcccCCCCCcccCCCHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPN---NANELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVVKGTPEYVR 113 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~~e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~ 113 (202)
..+.++..++++.+.+.|++.|.-+. |.| -.-.+++.. +++.+ -.++.|.|-... +.
T Consensus 42 ~ls~eei~~~i~~~~~~gv~~V~ltG--GEPll~~~l~~li~~-i~~~~gi~~v~itTNG~l----------------l~ 102 (334)
T TIGR02666 42 LLTFEEIERLVRAFVGLGVRKVRLTG--GEPLLRKDLVELVAR-LAALPGIEDIALTTNGLL----------------LA 102 (334)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEC--ccccccCCHHHHHHH-HHhcCCCCeEEEEeCchh----------------HH
Confidence 46788999999999999998887543 211 112233333 23222 225566663211 11
Q ss_pred HHHHHHHhHcCCCcccEEEeecCCC---------CCCHHHHHHHHHHHHHcCCc----cEEEecCCCHHHHHHHhc---C
Q 040066 114 ACCEASLKRLDVEYIDLYYQHRVDT---------TIPIEDTMGELKKLVEEGKI----KYIGLSEASPDTIRRAHA---V 177 (202)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~---------~~~~~~~~~~l~~l~~~G~v----r~iGvsn~~~~~l~~~~~---~ 177 (202)
+ .-+.|...|++++- +.++..++ ...++.+++.++.+++.|.- ..+-+.+.+.+++..+.+ .
T Consensus 103 ~-~~~~L~~~gl~~v~-ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~~g~n~~ei~~l~~~~~~ 180 (334)
T TIGR02666 103 R-HAKDLKEAGLKRVN-VSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVMRGVNDDEIVDLAEFAKE 180 (334)
T ss_pred H-HHHHHHHcCCCeEE-EecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHHHHHh
Confidence 2 23446666765543 33454432 12478899999999998852 223344567777666543 2
Q ss_pred CCeeEEcccCCccc
Q 040066 178 HPVTALQMEWSLWT 191 (202)
Q Consensus 178 ~~~~~~q~~~n~~~ 191 (202)
..+.+.=++|.++.
T Consensus 181 ~gv~~~~ie~mp~~ 194 (334)
T TIGR02666 181 RGVTLRFIELMPLG 194 (334)
T ss_pred cCCeEEEEeccCCC
Confidence 33333333454443
No 154
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=26.44 E-value=4.1e+02 Score=22.64 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=71.1
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh-------cCCCCCEEEEeccCcccCCCCCcccCCCHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK-------QLPREKVQLATKFGIVKFDMSDVVVKGTPE 110 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~-------~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~ 110 (202)
-.+.++...+++.+++.|++=|=-+.. |..+-+-|. ...-.++-++|-.
T Consensus 42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGG-------EPllR~dl~eIi~~l~~~~~~~islTTNG----------------- 97 (322)
T COG2896 42 LLSLEEIRRLVRAFAELGVEKVRLTGG-------EPLLRKDLDEIIARLARLGIRDLSLTTNG----------------- 97 (322)
T ss_pred cCCHHHHHHHHHHHHHcCcceEEEeCC-------CchhhcCHHHHHHHHhhcccceEEEecch-----------------
Confidence 346899999999999999999875532 333222222 1112344444432
Q ss_pred HHHHHHHHHHhHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHhcC
Q 040066 111 YVRACCEASLKRLDVEYIDLYYQHRVDTT--------IPIEDTMGELKKLVEEGK----IKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----vr~iGvsn~~~~~l~~~~~~ 177 (202)
.........|+.-|+++|.+ .||..+++ ..+..+++.++++++.|. |-.+=+-+.|.++|..+++.
T Consensus 98 ~~L~~~a~~Lk~AGl~rVNV-SLDsld~e~f~~IT~~~~~~~Vl~GI~~A~~~Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 98 VLLARRAADLKEAGLDRVNV-SLDSLDPEKFRKITGRDRLDRVLEGIDAAVEAGLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred hhHHHHHHHHHHcCCcEEEe-ecccCCHHHHHHHhCCCcHHHHHHHHHHHHHcCCCceEEEEEEecCCCHHHHHHHHHH
Confidence 13344556677777666543 34544432 125688899999998887 45677777787777776554
No 155
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=26.28 E-value=1.3e+02 Score=24.41 Aligned_cols=86 Identities=10% Similarity=0.004 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHh
Q 040066 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLK 121 (202)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (202)
....+.++.|-+.|++.++.+..+-. -++...-++++......+.+.|-++.... ......+++...+.+++-|+
T Consensus 84 ~~~~~yl~~~k~lGf~~IEiSdGti~--l~~~~r~~~I~~~~~~Gf~v~~EvG~K~~---~~~~~~~~~~~i~~~~~dLe 158 (244)
T PF02679_consen 84 GKFDEYLEECKELGFDAIEISDGTID--LPEEERLRLIRKAKEEGFKVLSEVGKKDP---ESDFSLDPEELIEQAKRDLE 158 (244)
T ss_dssp T-HHHHHHHHHHCT-SEEEE--SSS-----HHHHHHHHHHHCCTTSEEEEEES-SSH---HHHTT--CCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCCEEEecCCcee--CCHHHHHHHHHHHHHCCCEEeecccCCCc---hhcccCCHHHHHHHHHHHHH
Confidence 34567888888999999999887663 34555556666544556888888874221 11122346667777777777
Q ss_pred HcCCCcccEEEeecC
Q 040066 122 RLDVEYIDLYYQHRV 136 (202)
Q Consensus 122 ~Lg~d~iDl~~lh~~ 136 (202)
. | .|.+.+..-
T Consensus 159 A-G---A~~ViiEar 169 (244)
T PF02679_consen 159 A-G---ADKVIIEAR 169 (244)
T ss_dssp H-T---ECEEEE--T
T ss_pred C-C---CCEEEEeee
Confidence 6 5 566777654
No 156
>PRK10150 beta-D-glucuronidase; Provisional
Probab=25.72 E-value=2e+02 Score=26.50 Aligned_cols=58 Identities=19% Similarity=0.092 Sum_probs=37.9
Q ss_pred CCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHH
Q 040066 17 QGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKA 78 (202)
Q Consensus 17 ~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~ 78 (202)
+|.+|-.-|.+...-....|...+++...+-++.+-+.|+|.+=|+ +|.. +|..+=.+
T Consensus 288 NG~pv~lrG~~~h~~~~~~G~a~~~~~~~~d~~l~K~~G~N~vR~s-h~p~---~~~~~~~c 345 (604)
T PRK10150 288 NGKPFYFKGFGKHEDADIRGKGLDEVLNVHDHNLMKWIGANSFRTS-HYPY---SEEMLDLA 345 (604)
T ss_pred CCEEEEEEeeeccCCCCccCCcCCHHHHHHHHHHHHHCCCCEEEec-cCCC---CHHHHHHH
Confidence 3445544455444332233556777777788888889999999996 7875 66654433
No 157
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.68 E-value=1.9e+02 Score=23.14 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=28.9
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHH
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKA 78 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~ 78 (202)
.+.+++.++.+..++.|++.++.+..-.. +.+.+.+.
T Consensus 24 ~~~~~a~~~~~al~~gGi~~iEiT~~tp~---a~~~i~~l 60 (222)
T PRK07114 24 ADVEVAKKVIKACYDGGARVFEFTNRGDF---AHEVFAEL 60 (222)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCCc---HHHHHHHH
Confidence 37799999999999999999998865443 56655443
No 158
>cd00814 MetRS_core catalytic core domain of methioninyl-tRNA synthetases. Methionine tRNA synthetase (MetRS) catalytic core domain. This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and an anti-codon binding domain, functions as a monomer. However, in some species the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion than IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=25.57 E-value=1.1e+02 Score=25.50 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKI 158 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~v 158 (202)
.+...+.+++.+++||++ .|.+.-. ........+.+.+++|+++|.+
T Consensus 68 ~~~~~~~~~~~l~~LgI~-~D~~~~t--t~~~~~~~v~~i~~~L~ekG~i 114 (319)
T cd00814 68 CDKYHEIFKDLFKWLNIS-FDYFIRT--TSPRHKEIVQEFFKKLYENGYI 114 (319)
T ss_pred HHHHHHHHHHHHHHcCCc-CCCCeeC--CCHHHHHHHHHHHHHHHHCCCE
Confidence 466788899999999986 5753221 1112345678899999999998
No 159
>PRK14454 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=25.56 E-value=4.2e+02 Score=22.56 Aligned_cols=88 Identities=16% Similarity=0.014 Sum_probs=56.2
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcc-cEEEeecCCCCCCHHHHHHHHHHHHH-cCC---ccEEEecCCC-HHHHHHHhcCC
Q 040066 105 VKGTPEYVRACCEASLKRLDVEYI-DLYYQHRVDTTIPIEDTMGELKKLVE-EGK---IKYIGLSEAS-PDTIRRAHAVH 178 (202)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~i-Dl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---vr~iGvsn~~-~~~l~~~~~~~ 178 (202)
..++.+.|.+++......++. .+ -++.+-.=++....+.+.++++.+++ .|. -|++-||+.. ...+.++.+..
T Consensus 127 rnlt~~EI~~qv~~~~~~~~~-~~~gvV~mggGEPLln~d~v~~~l~~l~~~~gi~~~~r~itvsTsG~~p~i~~l~~~~ 205 (342)
T PRK14454 127 RNLTAGEMLDQILAAQNDIGE-RISNIVLMGSGEPLDNYENVMKFLKIVNSPYGLNIGQRHITLSTCGIVPKIYELADEN 205 (342)
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CCCCEEEECCchhhcCHHHHHHHHHHHhcccccCcCCCceEEECcCChhHHHHHHhhc
Confidence 456889999999888776652 23 33555555556667889999999997 476 3577777732 23466666543
Q ss_pred CeeEEcccCCccccc
Q 040066 179 PVTALQMEWSLWTRE 193 (202)
Q Consensus 179 ~~~~~q~~~n~~~~~ 193 (202)
....+.+..|..+..
T Consensus 206 ~~~~laisLka~d~e 220 (342)
T PRK14454 206 LQITLAISLHAPNDE 220 (342)
T ss_pred ccceEEEecCCCCHH
Confidence 333355666655543
No 160
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.38 E-value=3.7e+02 Score=21.88 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHc--CCccEEEecCCC
Q 040066 142 IEDTMGELKKLVEE--GKIKYIGLSEAS 167 (202)
Q Consensus 142 ~~~~~~~l~~l~~~--G~vr~iGvsn~~ 167 (202)
..++++.++.+++. |.=-.+|+||-+
T Consensus 173 ~~~~l~~i~~l~~~~pg~p~l~G~Sn~S 200 (261)
T PRK07535 173 GPEVLETIRRIKELYPKVHTTCGLSNIS 200 (261)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCCc
Confidence 34678899999988 888899999965
No 161
>COG4451 RbcS Ribulose bisphosphate carboxylase small subunit [Energy production and conversion]
Probab=25.37 E-value=2.6e+02 Score=20.13 Aligned_cols=62 Identities=19% Similarity=0.255 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhH---cCCCcccEE------EeecCCCCC---CHHHHHHHHHHHHHc---CCccEEEecCCC
Q 040066 106 KGTPEYVRACCEASLKR---LDVEYIDLY------YQHRVDTTI---PIEDTMGELKKLVEE---GKIKYIGLSEAS 167 (202)
Q Consensus 106 ~~~~~~i~~~~~~sL~~---Lg~d~iDl~------~lh~~~~~~---~~~~~~~~l~~l~~~---G~vr~iGvsn~~ 167 (202)
.++...+.++++..|.. .|++|.|.= +.-|-.+.. ...+++..|+++..+ -.||-||+-+-.
T Consensus 18 ~Ltd~qi~~QVrylL~QGykigvE~~d~rrprtgsWt~wg~p~f~~~~~~evlaele~Cr~dhp~eYIRliGfDp~g 94 (127)
T COG4451 18 PLTDEQIAEQVRYLLSQGYKIGVEYVDDRRPRTGSWTMWGTPMFGAKTAGEVLAELEACRADHPGEYIRLIGFDPKG 94 (127)
T ss_pred cCcHHHHHHHHHHHHhCCcccceeecccCCcccceeeecCCccccccchHHHHHHHHHHHHhCCCCeEEEEEecCCC
Confidence 45668899999999964 588887751 112212111 134778888877766 458999987754
No 162
>PRK10508 hypothetical protein; Provisional
Probab=25.30 E-value=2.1e+02 Score=24.30 Aligned_cols=43 Identities=12% Similarity=0.106 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 040066 106 KGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLV 153 (202)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 153 (202)
..+++.|.+.+++..+++|+|.+ +++.+. .+.++.++.++-|.
T Consensus 285 vGtpe~V~~kl~~l~~~~g~del---~~~~~~--~~~e~~~~S~~lla 327 (333)
T PRK10508 285 VGDKAKVRHGLQSILRETQADEI---MVNGQI--FDHQARLHSFELAM 327 (333)
T ss_pred EeCHHHHHHHHHHHHHHHCcCEE---EEECCC--CCHHHHHHHHHHHH
Confidence 45899999999999999998876 334333 34555555555443
No 163
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=25.29 E-value=3.9e+02 Score=22.08 Aligned_cols=124 Identities=16% Similarity=0.140 Sum_probs=64.0
Q ss_pred HHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHH--HhcC-CCCCEEEEeccCcccCCCCCcc----cCCCHHHHHHHHH
Q 040066 45 ISIIKHAFDQGITFFDTADVYGPNNANELLVGKA--LKQL-PREKVQLATKFGIVKFDMSDVV----VKGTPEYVRACCE 117 (202)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~--l~~~-~r~~~~i~tK~~~~~~~~~~~~----~~~~~~~i~~~~~ 117 (202)
.+.++.|++.|++.|---..--+ .++.+..+ +.+. ....+.+-..++.....+.... ...+++.. .
T Consensus 87 ~e~i~~Al~~G~tsVm~d~s~~~---~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea----~ 159 (281)
T PRK06806 87 FEKIKEALEIGFTSVMFDGSHLP---LEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEA----K 159 (281)
T ss_pred HHHHHHHHHcCCCEEEEcCCCCC---HHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHH----H
Confidence 46788899999998764333222 34444333 2221 1223334444443321111100 01233433 3
Q ss_pred HHHhHcCCCcccE--EEeecCCCCCCHHHHHHHHHHHHHc---CCccEEEecCCCHHHHHHHhcC
Q 040066 118 ASLKRLDVEYIDL--YYQHRVDTTIPIEDTMGELKKLVEE---GKIKYIGLSEASPDTIRRAHAV 177 (202)
Q Consensus 118 ~sL~~Lg~d~iDl--~~lh~~~~~~~~~~~~~~l~~l~~~---G~vr~iGvsn~~~~~l~~~~~~ 177 (202)
+..++.|+|||-+ --+|......+ .--++.|.++++. . +-.+|-|.-+.+++.++.+.
T Consensus 160 ~f~~~tg~DyLAvaiG~~hg~~~~~~-~l~~~~L~~i~~~~~iP-lV~hG~SGI~~e~~~~~i~~ 222 (281)
T PRK06806 160 RFAEETDVDALAVAIGNAHGMYNGDP-NLRFDRLQEINDVVHIP-LVLHGGSGISPEDFKKCIQH 222 (281)
T ss_pred HHHHhhCCCEEEEccCCCCCCCCCCC-ccCHHHHHHHHHhcCCC-EEEECCCCCCHHHHHHHHHc
Confidence 3344578898888 66776432211 1123344444433 3 44788889999999888654
No 164
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=25.18 E-value=3.9e+02 Score=21.95 Aligned_cols=104 Identities=13% Similarity=0.040 Sum_probs=61.5
Q ss_pred CCCCHHHHHHHHHHHHH--cCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 37 DPVPVEVGISIIKHAFD--QGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~--~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
+..++++..++++.|.+ .|+.-+-+.+.|= ....+.|+.....++-|+|-++++.... +.+.-..
T Consensus 21 p~~T~~~I~~lc~eA~~~~~~faaVcV~P~~v------~~a~~~L~~~~~~~vkv~tVigFP~G~~-------~t~~K~~ 87 (257)
T PRK05283 21 DDDTDEKVIALCHQAKTPVGNTAAICIYPRFI------PIARKTLREQGTPEIRIATVTNFPHGND-------DIDIALA 87 (257)
T ss_pred CCCCHHHHHHHHHHHHhcCCCeeEEEECHHHH------HHHHHHhcccCCCCCeEEEEecCCCCCC-------cHHHHHH
Confidence 44678999999999999 5887777665433 3334445421111588888888765432 3344444
Q ss_pred HHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH
Q 040066 115 CCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE 154 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~ 154 (202)
..+..++. |.+-||++.==..--..+++.+.+.+.++++
T Consensus 88 Ea~~Ai~~-GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~ 126 (257)
T PRK05283 88 ETRAAIAY-GADEVDVVFPYRALMAGNEQVGFELVKACKE 126 (257)
T ss_pred HHHHHHHc-CCCEEeeeccHHHHhCCcHHHHHHHHHHHHH
Confidence 45566664 9999999762111112334455555555554
No 165
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=25.14 E-value=1.9e+02 Score=28.07 Aligned_cols=58 Identities=14% Similarity=0.114 Sum_probs=42.5
Q ss_pred HHHHHHHHHhHcCCCc--ccEEEeecCCCCCC---HHHHHHHHHHHHHcCCccEEEecCCCHHHH
Q 040066 112 VRACCEASLKRLDVEY--IDLYYQHRVDTTIP---IEDTMGELKKLVEEGKIKYIGLSEASPDTI 171 (202)
Q Consensus 112 i~~~~~~sL~~Lg~d~--iDl~~lh~~~~~~~---~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l 171 (202)
+-=++.-+|..+=..+ ++++++.-|....| .+.+.+.|+.+... ++.|||-+|..+-.
T Consensus 824 ~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~--~~qiiIISH~eel~ 886 (908)
T COG0419 824 ASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSD--GRQIIIISHVEELK 886 (908)
T ss_pred HHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHH
Confidence 3444556666665566 99999999876655 45778888888887 88999999875433
No 166
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=25.10 E-value=4.4e+02 Score=22.56 Aligned_cols=25 Identities=8% Similarity=0.194 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
..+.++..++++...+.||+.|+.+
T Consensus 19 ~~s~~~k~~ia~~L~~~Gv~~IEvG 43 (365)
T TIGR02660 19 AFTAAEKLAIARALDEAGVDELEVG 43 (365)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 4577888999999999999999986
No 167
>PF08671 SinI: Anti-repressor SinI; InterPro: IPR010981 The SinR repressor is part of a group of Sin (sporulation inhibition) proteins in Bacillus subtilis that regulate the commitment to sporulation in response to extreme adversity []. SinR is a tetrameric repressor protein that binds to the promoters of genes essential for entry into sporulation and prevents their transcription. This repression is overcome through the activity of SinI, which disrupts the SinR tetramer through the formation of a SinI-SinR heterodimer, thereby allowing sporulation to proceed. The SinR structure consists of two domains: a dimerisation domain stabilised by a hydrophobic core, and a DNA-binding domain that is identical to domains of the bacteriophage 434 CI and Cro proteins that regulate prophage induction. The dimerisation domain is a four-helical bundle formed from two helices from the C-terminal residues of SinR and two helices from the central residues of SinI. These regions in SinR and SinI are similar in both structure and sequence. The interaction of SinR monomers to form tetramers is weaker than between SinR and SinI, since SinI can effectively disrupt SinR tetramers. This entry represents the dimerisation domain in both SinI and SinR proteins.; GO: 0005488 binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1B0N_A 2YAL_A.
Probab=25.08 E-value=91 Score=16.59 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHcCCC
Q 040066 42 EVGISIIKHAFDQGIT 57 (202)
Q Consensus 42 ~~~~~~l~~A~~~Gi~ 57 (202)
++-.+++..|.+.|++
T Consensus 3 ~EW~~Li~eA~~~Gls 18 (30)
T PF08671_consen 3 EEWVELIKEAKESGLS 18 (30)
T ss_dssp HHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHcCCC
Confidence 5667889999998885
No 168
>PLN02666 5-oxoprolinase
Probab=25.03 E-value=6.6e+02 Score=25.82 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=66.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCC-CChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCc---cc--CC--CH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGP-NNANELLVGKALKQLPREKVQLATKFGIVKFDMSDV---VV--KG--TP 109 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~---~~--~~--~~ 109 (202)
+.++++.+++++...+.|+.-+-.+-.+.. +-..|+.+.+.+++...-.+.+++.+++.....+.. .. .+ .-
T Consensus 172 plde~~v~~~~~~l~~~gv~avAV~~l~S~~NP~HE~~v~ei~~e~~~~~VslShei~~~~~e~eR~~TavlnAyl~p~~ 251 (1275)
T PLN02666 172 PLDEEALRPLLQGLLDKGIRSLAVVLMHSYTYPAHERAVGKLARSMGFKQVSLSSALVPMVRAVPRGHTASVDAYLTPVI 251 (1275)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEeecCcCChHHHHHHHHHHHhcCCCcEEEcchhhhhccccchHHHHHHHHHHHHHH
Confidence 568899999999999999999886654443 245788999999874434577778887643221110 00 00 01
Q ss_pred HHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHH
Q 040066 110 EYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIE 143 (202)
Q Consensus 110 ~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~ 143 (202)
......+++.|+..+.. -+++++++.....+++
T Consensus 252 ~~yl~~l~~~l~~~g~~-~~l~im~sdGG~~~~~ 284 (1275)
T PLN02666 252 KEYLSGFLSGFDDGLGD-VNVLFMQSDGGLTPES 284 (1275)
T ss_pred HHHHHHHHHHHHhcCCC-CCEEEEecCCCcCCHH
Confidence 23445566666655544 4888888765545443
No 169
>PF10171 DUF2366: Uncharacterised conserved protein (DUF2366); InterPro: IPR019322 This is a set of proteins conserved from nematodes to humans. The function is not known.
Probab=24.77 E-value=1.6e+02 Score=22.58 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=28.2
Q ss_pred ccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCC
Q 040066 128 IDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 128 iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
.++++++.......-++-+..|+.+..+|++|++-+.-|+
T Consensus 78 n~l~lv~~~~rNp~S~~hvq~l~~l~nqg~Lr~~nLG~~S 117 (173)
T PF10171_consen 78 NDLLLVSPAIRNPTSDKHVQRLMRLRNQGRLRYLNLGLFS 117 (173)
T ss_pred CceeccChhhcCchHHHHHHHHHHHhcCCceEEeeeeeEE
Confidence 4566666443333355778899999999999988765555
No 170
>COG5310 Homospermidine synthase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.66 E-value=3.7e+02 Score=23.31 Aligned_cols=76 Identities=14% Similarity=0.038 Sum_probs=44.9
Q ss_pred HHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCC
Q 040066 46 SIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDV 125 (202)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~ 125 (202)
+..+...+.||+|+-++-.--+ -..+++..|+...-+.+.|---+ . .+. -.+-+.++++++
T Consensus 51 k~~k~~~~~girfV~e~it~~N---yk~vL~pll~~~~gqgf~vnLSv-d-----------~~s----~Dlmr~crk~~v 111 (481)
T COG5310 51 KDRKILDERGIRFVQEAITRDN---YKDVLKPLLKGVGGQGFCVNLSV-D-----------TSS----LDLMRLCRKHGV 111 (481)
T ss_pred HHHHHHHhhhhHHHHHhcChhh---HHHHHHHHhhcCCCceEEEEeEe-c-----------cch----hHHHHHHHHcCe
Confidence 4556666889999987753322 34567777766433333332222 1 122 224466788898
Q ss_pred CcccEEEeecCCCCC
Q 040066 126 EYIDLYYQHRVDTTI 140 (202)
Q Consensus 126 d~iDl~~lh~~~~~~ 140 (202)
=|||-+.=-|+....
T Consensus 112 LYidTvVEpW~gfyf 126 (481)
T COG5310 112 LYIDTVVEPWLGFYF 126 (481)
T ss_pred EEEeeeeccccccch
Confidence 899988777764433
No 171
>PRK10997 yieM hypothetical protein; Provisional
Probab=24.61 E-value=2.9e+02 Score=24.97 Aligned_cols=65 Identities=11% Similarity=0.126 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhHcCC---CcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC--CCHHHHHHHh
Q 040066 111 YVRACCEASLKRLDV---EYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE--ASPDTIRRAH 175 (202)
Q Consensus 111 ~i~~~~~~sL~~Lg~---d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn--~~~~~l~~~~ 175 (202)
.+..+++..++.++. ..-|++++-+.-.....+++.+.+..|++++..|..||+- +....+.++.
T Consensus 398 Dl~~aL~~al~~l~~~~~r~adIVVISDF~~~~~~eel~~~L~~Lk~~~~~rf~~l~i~~~~~p~l~~if 467 (487)
T PRK10997 398 DLAPCLRAIIEKMQGREWFDADAVVISDFIAQRLPDELVAKVKELQRQHQHRFHAVAMSAHGKPGIMRIF 467 (487)
T ss_pred cHHHHHHHHHHHHcccccCCceEEEECCCCCCCChHHHHHHHHHHHHhcCcEEEEEEeCCCCCchHHHhc
Confidence 366667777777753 2478888876543333467899999999977777776654 3333444443
No 172
>COG0825 AccA Acetyl-CoA carboxylase alpha subunit [Lipid metabolism]
Probab=24.59 E-value=81 Score=26.46 Aligned_cols=39 Identities=31% Similarity=0.352 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcC---CCeeeCcCCcCCCChhHHHHHHHHh
Q 040066 42 EVGISIIKHAFDQG---ITFFDTADVYGPNNANELLVGKALK 80 (202)
Q Consensus 42 ~~~~~~l~~A~~~G---i~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (202)
-.|.++++.|-+.| +++|||+..|..-+--|+.-++++.
T Consensus 137 RKAlRlm~~AekF~lPiitfIDT~GAypG~~AEErGQ~eAIA 178 (317)
T COG0825 137 RKALRLMKLAEKFGLPIITFIDTPGAYPGIGAEERGQSEAIA 178 (317)
T ss_pred HHHHHHHHHHHHhCCCEEEEecCCCCCCCcchhhcccHHHHH
Confidence 35678888888887 5789999999972222334444443
No 173
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=24.57 E-value=4.7e+02 Score=22.74 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=70.7
Q ss_pred CCCEEEEeccCccc------CCCCCcccCCCHHHHHHHHHHHHhHcCC-------------CcccEEEeecC-CCCCCHH
Q 040066 84 REKVQLATKFGIVK------FDMSDVVVKGTPEYVRACCEASLKRLDV-------------EYIDLYYQHRV-DTTIPIE 143 (202)
Q Consensus 84 r~~~~i~tK~~~~~------~~~~~~~~~~~~~~i~~~~~~sL~~Lg~-------------d~iDl~~lh~~-~~~~~~~ 143 (202)
|..+-|+|-+|+.- .+..+....++...|-+|+....+.++. ..+.-+.+-.. ++...++
T Consensus 106 r~TlCvSSQvGC~mgC~FCaTG~~G~~RNLt~~EIv~Qv~~~~~~l~~~~~~~~~~~~~~~~~i~NIVfMGMGEPL~Nyd 185 (371)
T PRK14461 106 RATVCVSTQAGCGMGCVFCATGTLGLLRNLSSGEIVAQVIWASRELRAMGAAISKRHAGPVGRVTNLVFMGMGEPFANYD 185 (371)
T ss_pred CceEEEEccCCccCCCCcccCCCCCcccCCCHHHHHHHHHHHHHHhhhcccccccccccccCceeeEEEEccCCchhhHH
Confidence 44556667666432 1222445677899999999877666532 22444444333 3334567
Q ss_pred HHHHHHHHHHHc-CC---ccEEEecCCC-HHHHHHHhcCCCeeEEcccCCcccccccccccC
Q 040066 144 DTMGELKKLVEE-GK---IKYIGLSEAS-PDTIRRAHAVHPVTALQMEWSLWTREIEDEIVP 200 (202)
Q Consensus 144 ~~~~~l~~l~~~-G~---vr~iGvsn~~-~~~l~~~~~~~~~~~~q~~~n~~~~~~~~~ll~ 200 (202)
.++++++-+.+. |. -|.|=||+.. ...|.++.+.....-+.+..|.-+.+.-.++.|
T Consensus 186 nV~~ai~il~d~~g~~is~R~ITVST~Givp~I~~la~~~~~v~LAiSLHA~~~e~R~~lmP 247 (371)
T PRK14461 186 RWWQAVERLHDPQGFNLGARSMTVSTVGLVKGIRRLANERLPINLAISLHAPDDALRSELMP 247 (371)
T ss_pred HHHHHHHHhcCccccCcCCCceEEEeecchhHHHHHHhcccCceEEEEeCCCCHHHHHHhcC
Confidence 899999988765 32 4577777765 346778777654455666666655544444554
No 174
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=24.35 E-value=2.2e+02 Score=24.33 Aligned_cols=60 Identities=12% Similarity=0.137 Sum_probs=31.8
Q ss_pred ccceeeecccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHh
Q 040066 21 VSKLGFGCMGLTG----IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALK 80 (202)
Q Consensus 21 vs~lg~Gt~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~ 80 (202)
+..|.+|.-++.. ..+...+.+++.++++.+-+.|+..+-+--.||-||++++-+-+.++
T Consensus 114 ~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~tl~ 177 (353)
T PRK05904 114 VNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEVFN 177 (353)
T ss_pred CCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHHHH
Confidence 4456666544332 12344556666777777777776533333345544566665554444
No 175
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.26 E-value=3.5e+02 Score=21.21 Aligned_cols=41 Identities=7% Similarity=0.016 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQL 82 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~ 82 (202)
.+.+++.++.+..++.|++.++.+..-.. +.+.+.+.-++.
T Consensus 13 ~~~~~a~~ia~al~~gGi~~iEit~~tp~---a~~~I~~l~~~~ 53 (201)
T PRK06015 13 DDVEHAVPLARALAAGGLPAIEITLRTPA---ALDAIRAVAAEV 53 (201)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHC
Confidence 36799999999999999999998765443 666665544444
No 176
>PF00388 PI-PLC-X: Phosphatidylinositol-specific phospholipase C, X domain This entry is for the whole phospholipase C protein; InterPro: IPR000909 Phosphatidylinositol-specific phospholipase C (3.1.4.11 from EC), a eukaryotic intracellular enzyme, plays an important role in signal transduction processes []. It catalyzes the hydrolysis of 1-phosphatidyl-D-myo-inositol-3,4,5-triphosphate into the second messenger molecules diacylglycerol and inositol-1,4,5-triphosphate. This catalytic process is tightly regulated by reversible phosphorylation and binding of regulatory proteins [, , ]. In mammals, there are at least 6 different isoforms of PI-PLC, they differ in their domain structure, their regulation, and their tissue distribution. Lower eukaryotes also possess multiple isoforms of PI-PLC. All eukaryotic PI-PLCs contain two regions of homology, sometimes referred to as the 'X-box' and 'Y-box'. The order of these two regions is always the same (NH2-X-Y-COOH), but the spacing is variable. In most isoforms, the distance between these two regions is only 50-100 residues but in the gamma isoforms one PH domain, two SH2 domains, and one SH3 domain are inserted between the two PLC-specific domains. The two conserved regions have been shown to be important for the catalytic activity. By profile analysis, we could show that sequences with significant similarity to the X-box domain occur also in prokaryotic and trypanosome PI-specific phospholipases C. Apart from this region, the prokaryotic enzymes show no similarity to their eukaryotic counterparts.; GO: 0004629 phospholipase C activity, 0006629 lipid metabolic process, 0035556 intracellular signal transduction; PDB: 2FJU_B 2ZKM_X 3V18_A 3V1H_A 3V16_A 3QR1_D 3EA3_A 3EA1_A 2OR2_A 1T6M_B ....
Probab=24.25 E-value=53 Score=23.92 Aligned_cols=20 Identities=20% Similarity=0.313 Sum_probs=13.5
Q ss_pred HHHHHHHHcCCCeeeCcCCc
Q 040066 46 SIIKHAFDQGITFFDTADVY 65 (202)
Q Consensus 46 ~~l~~A~~~Gi~~~DtA~~Y 65 (202)
.-+...++.|+|+||---.+
T Consensus 30 ~~i~~QL~~GiR~lDlrv~~ 49 (146)
T PF00388_consen 30 WSIREQLESGIRYLDLRVWD 49 (146)
T ss_dssp HHHHHHHHTT--EEEEEEEE
T ss_pred HhHHHHHhccCceEEEEEEc
Confidence 45788999999999954433
No 177
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=24.16 E-value=2.9e+02 Score=20.49 Aligned_cols=80 Identities=16% Similarity=0.192 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHhcCCCeeEEc
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~vr~iGvsn~~~~~l~~~~~~~~~~~~q 184 (202)
.+.+.|.+.+++.-+.+|++ ++++|-. . --++.+.+.+..+ +|.|-.=|--++..-.|..++......++.
T Consensus 24 ~tl~di~~~~~~~a~~~g~~-v~~~QSN--~----EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~~P~vE 96 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVE-LEFFQSN--S----EGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVSLPVVE 96 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC--c----HHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCCCCEEE
Confidence 47899999999999999965 6666632 1 1267777777754 355555555666667788888776666888
Q ss_pred ccCCccccc
Q 040066 185 MEWSLWTRE 193 (202)
Q Consensus 185 ~~~n~~~~~ 193 (202)
+..|=.+.+
T Consensus 97 VHiSNi~aR 105 (141)
T TIGR01088 97 VHLSNVHAR 105 (141)
T ss_pred EEcCCcccc
Confidence 887755543
No 178
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=23.95 E-value=4e+02 Score=21.76 Aligned_cols=118 Identities=13% Similarity=0.160 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCC---ChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPN---NANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~---g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
..+.++..++++.+.+.|+..|.-+. |-| ..-..++.. +++..-.++.|.|-.. .+ .
T Consensus 39 ~ls~eei~~~i~~~~~~gi~~I~~tG--GEPll~~~l~~iv~~-l~~~g~~~v~i~TNG~----------------ll-~ 98 (302)
T TIGR02668 39 ELSPEEIERIVRVASEFGVRKVKITG--GEPLLRKDLIEIIRR-IKDYGIKDVSMTTNGI----------------LL-E 98 (302)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEC--cccccccCHHHHHHH-HHhCCCceEEEEcCch----------------HH-H
Confidence 46778888999988899998887542 211 011222222 2322222444544321 11 1
Q ss_pred HHHHHHhHcCCCcccEEEeecCCCC--------CCHHHHHHHHHHHHHcCC----ccEEEecCCCHHHHHHHhc
Q 040066 115 CCEASLKRLDVEYIDLYYQHRVDTT--------IPIEDTMGELKKLVEEGK----IKYIGLSEASPDTIRRAHA 176 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~~--------~~~~~~~~~l~~l~~~G~----vr~iGvsn~~~~~l~~~~~ 176 (202)
..-..|.+.|++.+- +.++.+++. ..++.+++.++.+++.|. +..+.+.+.+.+++.++++
T Consensus 99 ~~~~~l~~~g~~~v~-iSld~~~~~~~~~i~~~~~~~~vl~~i~~~~~~G~~~v~i~~v~~~g~n~~ei~~~~~ 171 (302)
T TIGR02668 99 KLAKKLKEAGLDRVN-VSLDTLDPEKYKKITGRGALDRVIEGIESAVDAGLTPVKLNMVVLKGINDNEIPDMVE 171 (302)
T ss_pred HHHHHHHHCCCCEEE-EEecCCCHHHhhhccCCCcHHHHHHHHHHHHHcCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 223345666665543 334544321 246788999999999874 2344555467777666543
No 179
>TIGR03858 LLM_2I7G probable oxidoreductase, LLM family. This model describes a highly conserved, somewhat broadly distributed family withing the luciferase-like monooxygenase (LLM) superfamily. Most members are from species incapable of synthesizing coenzyme F420, bound by some members of the LLM superfamily. Members, therefore, are more likely to use FMN as a cofactor.
Probab=23.84 E-value=2.4e+02 Score=23.74 Aligned_cols=45 Identities=20% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 040066 106 KGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLV 153 (202)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 153 (202)
..+++.|.+++++..+.+|+++ ++++.+....+.++.++.|+.+.
T Consensus 285 vGtPe~V~e~i~~~~~~~G~d~---~~l~~~~~~~~~~~~~~~i~~fa 329 (337)
T TIGR03858 285 VGSPETVAEKIADTIETLGLDR---FMLHYSVGSLPHEQVMRAIELYG 329 (337)
T ss_pred eeCHHHHHHHHHHHHHHcCCCe---EEEEecCCCCCHHHHHHHHHHHh
Confidence 4578888888888777788654 44454333344555556665443
No 180
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=23.64 E-value=2.1e+02 Score=22.36 Aligned_cols=42 Identities=7% Similarity=0.037 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP 83 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~ 83 (202)
.+.+++.++++.+++.|++.|.....-.. +.+.+....++.+
T Consensus 19 ~~~~~~~~~~~a~~~gGi~~iEvt~~~~~---~~~~i~~l~~~~~ 60 (206)
T PRK09140 19 ITPDEALAHVGALIEAGFRAIEIPLNSPD---PFDSIAALVKALG 60 (206)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCcc---HHHHHHHHHHHcC
Confidence 46799999999999999999997753332 5555555544443
No 181
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=23.57 E-value=38 Score=26.87 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=13.4
Q ss_pred HcCCCeeeCcCCcCC
Q 040066 53 DQGITFFDTADVYGP 67 (202)
Q Consensus 53 ~~Gi~~~DtA~~Yg~ 67 (202)
-.|.++|+|++.||.
T Consensus 198 v~G~ryF~c~p~yGg 212 (234)
T KOG3206|consen 198 VNGKRYFECAPKYGG 212 (234)
T ss_pred ccceEeeecCCccCC
Confidence 379999999999995
No 182
>PF02525 Flavodoxin_2: Flavodoxin-like fold; InterPro: IPR003680 This family consists of a domain with a flavodoxin-like fold. The family includes bacterial and eukaryotic NAD(P)H dehydrogenase (quinone) 1.6.99.2 from EC. These enzymes catalyse the NAD(P)H-dependent two-electron reductions of quinones and protect cells against damage by free radicals and reactive oxygen species []. This enzyme uses a FAD cofactor. The equation for this reaction is NAD(P)H + acceptor = NAD(P)(+) + reduced acceptor. This enzyme is also involved in the bioactivation of prodrugs used in chemotherapy []. The family also includes acyl carrier protein phosphodiesterase 3.1.4.14 from EC. This enzyme converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine residue from ACP []. This family is related to FMN_red IPR005025 from INTERPRO and Flavodoxin_1 IPR008254 from INTERPRO.; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0050662 coenzyme binding; PDB: 1T5B_B 1DXQ_B 2B3D_A 2Z9D_B 2Z9C_A 2Z98_A 2D5I_A 2Z9B_A 1TIK_A 1V4B_A ....
Probab=23.49 E-value=3.3e+02 Score=20.62 Aligned_cols=101 Identities=20% Similarity=0.126 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHcCCCeeeCcCC-cCCCChhHHHHHHHHhcCCCCCEE-EEeccCcccCCCCCcccCCCHHHHHHHHHH
Q 040066 41 VEVGISIIKHAFDQGITFFDTADV-YGPNNANELLVGKALKQLPREKVQ-LATKFGIVKFDMSDVVVKGTPEYVRACCEA 118 (202)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~-Yg~~g~~e~~lg~~l~~~~r~~~~-i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~ 118 (202)
+...+..++.-+..|..+ .+... |+. +..|+ ..++. |+|-.++..............+.+...++.
T Consensus 94 Pa~lK~~iD~v~~~g~~~-~~~~g~~~~--------~~~L~---gKk~~~i~t~g~~~~~~~~~g~~~~~~~~~~~~~~~ 161 (199)
T PF02525_consen 94 PAQLKGWIDRVFTPGFTF-YTPDGKYPS--------GGLLK---GKKALLIVTSGGPEYSYGPPGIPGRSMDHLLPYLRG 161 (199)
T ss_dssp -HHHHHHHHHHSHTTTSE-EETTSTTCG--------EESTT---TSEEEEEEEESSSGGGGSTTSSTTSHHHHHHHHHHH
T ss_pred ChhHHHHHHHhCcCCeee-ecccccccc--------ccccc---cccEEEEEcCCCChHHhcccCCCCCChhhhHHHHHH
Confidence 478888899999999988 66553 221 00122 23444 444444422111000112245677777899
Q ss_pred HHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHH
Q 040066 119 SLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLV 153 (202)
Q Consensus 119 sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~ 153 (202)
.++-+|.+.++.+.++.......-+..-++++++.
T Consensus 162 ~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (199)
T PF02525_consen 162 ILKFCGIKDVESFSFEGVDNPDREEALEKALERAA 196 (199)
T ss_dssp HHHHTTEEEEEEEEEESTTTCCHHHHHHHHHHHHH
T ss_pred HHHhCCCceeeEEEEeCCCCCChHHHHHHHHHHHH
Confidence 99999999999999998762222223344444443
No 183
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=23.36 E-value=2.1e+02 Score=22.43 Aligned_cols=84 Identities=11% Similarity=0.140 Sum_probs=50.1
Q ss_pred CCHHHHHHHHHHHHhHcC-----------CCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHh
Q 040066 107 GTPEYVRACCEASLKRLD-----------VEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAH 175 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg-----------~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 175 (202)
.+.+.+.+++++-+.-.+ -+..|.+.+.. ....+......|+++.+-|+-.-|++.||..+..+-.+
T Consensus 44 id~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsq--tLQ~~~~P~~vL~EmlRVgr~~IVsFPNFg~W~~R~~l 121 (193)
T PF07021_consen 44 IDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQ--TLQAVRRPDEVLEEMLRVGRRAIVSFPNFGHWRNRLQL 121 (193)
T ss_pred cCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHh--HHHhHhHHHHHHHHHHHhcCeEEEEecChHHHHHHHHH
Confidence 355666666555544443 33444443331 11123455667888888898888999999998866543
Q ss_pred c-C-CCeeEEcccCCcccc
Q 040066 176 A-V-HPVTALQMEWSLWTR 192 (202)
Q Consensus 176 ~-~-~~~~~~q~~~n~~~~ 192 (202)
- . --|.+-+.+|+-.|.
T Consensus 122 ~~~GrmPvt~~lPy~WYdT 140 (193)
T PF07021_consen 122 LLRGRMPVTKALPYEWYDT 140 (193)
T ss_pred HhcCCCCCCCCCCCcccCC
Confidence 3 2 235556677776664
No 184
>PF00762 Ferrochelatase: Ferrochelatase; InterPro: IPR001015 Synonym(s): Protohaem ferro-lyase, Iron chelatase, etc. Ferrochelatase catalyses the last step in haem biosynthesis: the chelation of a ferrous ion to proto-porphyrin IX, to form protohaem [, ]. In eukaryotic cells, it binds to the mitochondrial inner membrane with its active site on the matrix side of the membrane. The X-ray structure of Bacillus subtilis and human ferrochelatase have been solved [, ]. The human enzyme exists as a homodimer. Each subunit contains one [2Fe-2S] cluster. The monomer is folded into two similar domains, each with a four-stranded parallel beta-sheet flanked by an alpha-helix in a beta-alpha-beta motif that is reminiscent of the fold found in the periplasmic binding proteins. The topological similarity between the domains suggests that they have arisen from a gene duplication event. However, significant differences exist between the two domains, including an N-terminal section (residues 80-130) that forms part of the active site pocket, and a C-terminal extension (residues 390-423) that is involved in coordination of the [2Fe-2S] cluster and in stabilisation of the homodimer. Ferrochelatase seems to have a structurally conserved core region that is common to the enzyme from bacteria, plants and mammals. Porphyrin binds in the identified cleft; this cleft also includes the metal-binding site of the enzyme. It is likely that the structure of the cleft region will have different conformations upon substrate binding and release [].; GO: 0004325 ferrochelatase activity, 0006783 heme biosynthetic process; PDB: 2QD3_B 2HRE_C 3HCN_B 2PNJ_A 2QD1_C 1HRK_A 2QD4_B 3AQI_B 2HRC_B 3HCO_B ....
Probab=23.27 E-value=1.3e+02 Score=25.30 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCH-HHHHHHHHHHHHcCCccEEEecC--CCHHHHHHH
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPI-EDTMGELKKLVEEGKIKYIGLSE--ASPDTIRRA 174 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~-~~~~~~l~~l~~~G~vr~iGvsn--~~~~~l~~~ 174 (202)
.+.+++.++...++||...+.+.+-.......++ ..+-+.|++|.++| ++.|=|.. |-.++++-+
T Consensus 206 ~~~~~~t~~~i~~~l~~~~~~~~fQS~~g~~~WL~P~~~~~l~~l~~~G-~~~V~v~p~gFv~D~lETl 273 (316)
T PF00762_consen 206 PAQCEETARLIAERLGLPEWRLAFQSRFGPGEWLGPSTEDVLEELAKEG-VKRVVVVPPGFVSDCLETL 273 (316)
T ss_dssp HHHHHHHHHHHHHHTTTSSEEEEEES-SSSS-BSSSBHHHHHHHHHHCT--SEEEEEETT-SSSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCceEEEEECCCCCCCCccccHHHHHHHHHhcC-CCeEEEECCccccccHhHH
Confidence 4567888888889999876565554333332222 25778899999999 44443332 334444443
No 185
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=23.19 E-value=54 Score=22.40 Aligned_cols=50 Identities=22% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
.-.+-.-|...|.||.-.+.-.. ..+++++.+.+++|.+.|+|..+.=+.
T Consensus 9 ~~~IL~hl~~~~~Dy~k~ia~~l---~~~~~~v~~~l~~Le~~GLler~~g~~ 58 (92)
T PF10007_consen 9 DLKILQHLKKAGPDYAKSIARRL---KIPLEEVREALEKLEEMGLLERVEGKT 58 (92)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHH---CCCHHHHHHHHHHHHHCCCeEEecCcc
Confidence 33445556677777655443322 466889999999999999999887543
No 186
>PLN02522 ATP citrate (pro-S)-lyase
Probab=23.19 E-value=1.9e+02 Score=26.91 Aligned_cols=85 Identities=22% Similarity=0.094 Sum_probs=48.7
Q ss_pred CChhHHHHHHHHhcCCCCCEEEEeccCcccC--CC----CCcccCCCHH-HHHHHHHHHHhHcCCCcccEEEeecCCCCC
Q 040066 68 NNANELLVGKALKQLPREKVQLATKFGIVKF--DM----SDVVVKGTPE-YVRACCEASLKRLDVEYIDLYYQHRVDTTI 140 (202)
Q Consensus 68 ~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~--~~----~~~~~~~~~~-~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~ 140 (202)
++..|+.+-+++++..+.+.+|+-|.+.... +. +|..--.+.+ ...+..+..|++.|+ +.+++..
T Consensus 233 Gg~~e~~f~ea~~~a~~~KPVVa~kaGrsa~~~~~~aa~gHtGAiag~~~~ta~~k~aAlr~aGv--------~vv~s~~ 304 (608)
T PLN02522 233 GGRDEYSLVEALKQGKVSKPVVAWVSGTCARLFKSEVQFGHAGAKSGGDMESAQAKNKALKDAGA--------IVPTSFE 304 (608)
T ss_pred CchhHHHHHHHHHHhcCCCCEEEEeccCCCccCccccccccccccccCCCccHHHHHHHHHHCCC--------eEeCCHH
Confidence 4778888888988755778899999886541 11 1111000111 122456677777774 2222222
Q ss_pred C-HHHHHHHHHHHHHcCCccE
Q 040066 141 P-IEDTMGELKKLVEEGKIKY 160 (202)
Q Consensus 141 ~-~~~~~~~l~~l~~~G~vr~ 160 (202)
+ .+-+.+.+++|+.+|.|.-
T Consensus 305 El~~~~~~~~~~~~~~~~~~~ 325 (608)
T PLN02522 305 ALEAAIKETFEKLVEEGKIIP 325 (608)
T ss_pred HHHHHHHHHHHHHHhCCceee
Confidence 2 2344566778888887654
No 187
>PRK05395 3-dehydroquinate dehydratase; Provisional
Probab=23.18 E-value=2.6e+02 Score=20.83 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH--cCCccEEEecCCCHHHHHHHhcCCCeeEEc
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE--EGKIKYIGLSEASPDTIRRAHAVHPVTALQ 184 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~--~G~vr~iGvsn~~~~~l~~~~~~~~~~~~q 184 (202)
.+.+.|.+.+++--+.+|++ ++++|-. . --++.+.+.+..+ +|.|-.=|--++..-.|..++....+.++.
T Consensus 26 ~tl~~i~~~~~~~a~~~g~~-v~~~QSN--~----EGelId~I~~a~~~~dgiiINpga~THtSiAl~DAl~~~~~P~VE 98 (146)
T PRK05395 26 TTLADIEALLEEEAAELGVE-LEFFQSN--H----EGELIDRIHEARDGADGIIINPGAYTHTSVALRDALAAVSIPVIE 98 (146)
T ss_pred CCHHHHHHHHHHHHHHcCCE-EEEEeeC--c----HHHHHHHHHhcccCCcEEEECchHHHHHHHHHHHHHHcCCCCEEE
Confidence 47899999999999999975 6666632 1 1267777777753 344544455556666788888777777888
Q ss_pred ccCCccccc
Q 040066 185 MEWSLWTRE 193 (202)
Q Consensus 185 ~~~n~~~~~ 193 (202)
+..+=.+.+
T Consensus 99 VHiSNi~aR 107 (146)
T PRK05395 99 VHLSNIHAR 107 (146)
T ss_pred EecCCcccc
Confidence 888755543
No 188
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=23.13 E-value=3.5e+02 Score=21.09 Aligned_cols=41 Identities=12% Similarity=0.036 Sum_probs=28.7
Q ss_pred CCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcC
Q 040066 39 VPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQL 82 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~ 82 (202)
.+.+++.++.++.++.|++.++.+..-.. +.+.+.+.-++.
T Consensus 17 ~~~~~a~~~~~al~~gGi~~iEiT~~t~~---a~~~I~~l~~~~ 57 (196)
T PF01081_consen 17 DDPEDAVPIAEALIEGGIRAIEITLRTPN---ALEAIEALRKEF 57 (196)
T ss_dssp SSGGGHHHHHHHHHHTT--EEEEETTSTT---HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCcc---HHHHHHHHHHHC
Confidence 36788999999999999999998765443 566665544443
No 189
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=23.10 E-value=71 Score=23.18 Aligned_cols=21 Identities=14% Similarity=0.075 Sum_probs=16.2
Q ss_pred HHHHHHHHHcCCCeeeCcCCc
Q 040066 45 ISIIKHAFDQGITFFDTADVY 65 (202)
Q Consensus 45 ~~~l~~A~~~Gi~~~DtA~~Y 65 (202)
...+..+++.|+|+||---.+
T Consensus 31 ~~~i~~qL~~GvR~~dirv~~ 51 (135)
T smart00148 31 VEGYIQALDHGCRCVELDCWD 51 (135)
T ss_pred HHHHHHHHHhCCCEEEEEccc
Confidence 356889999999999955333
No 190
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=23.01 E-value=4.1e+02 Score=21.53 Aligned_cols=48 Identities=17% Similarity=0.123 Sum_probs=29.8
Q ss_pred HhHcCCCcccEEEeecCCCCCCH---HHHHHHHHHHHHcCCccEEEecCCC
Q 040066 120 LKRLDVEYIDLYYQHRVDTTIPI---EDTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 120 L~~Lg~d~iDl~~lh~~~~~~~~---~~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
+.+.|++.-|+++=-........ -++++.++++++-|.=-.+|+||-+
T Consensus 157 ~~~~Gi~~~~iilDPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkS 207 (257)
T TIGR01496 157 LVAAGVAAERIILDPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKS 207 (257)
T ss_pred HHHcCCCHHHEEEECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccH
Confidence 45668876566552111111122 3567788888888877789999865
No 191
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=22.86 E-value=4.7e+02 Score=22.15 Aligned_cols=107 Identities=15% Similarity=0.206 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHHHHHh
Q 040066 42 EVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCEASLK 121 (202)
Q Consensus 42 ~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~ 121 (202)
..-+++++.+-+.|| .+|.|.. +++.+=.++.- .+..+|.|...+..- .+..+..-.++++...+
T Consensus 149 ~~Gk~lV~~~N~LgI-iiDlSH~------s~kt~~Dvl~~--s~~PviaSHSN~~al------~~h~RNl~D~qlkaI~~ 213 (313)
T COG2355 149 PFGKELVREMNELGI-IIDLSHL------SDKTFWDVLDL--SKAPVVASHSNARAL------VDHPRNLSDEQLKAIAE 213 (313)
T ss_pred HHHHHHHHHHHhcCC-EEEeccc------CCccHHHHHhc--cCCceEEecCCchhc------cCCCCCCCHHHHHHHHh
Confidence 345789999999998 6898843 66776777654 345566666543211 11122223455555555
Q ss_pred HcCCCcccEEEeecC-C----CCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 122 RLDVEYIDLYYQHRV-D----TTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 122 ~Lg~d~iDl~~lh~~-~----~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
+=|+ |.+.++-.. . ...++++..+.++.+++.+=++++|+.+
T Consensus 214 ~gGv--Igv~~~~~fl~~~~~~~atldd~v~hI~h~v~~~G~dhVglGs 260 (313)
T COG2355 214 TGGV--IGVNFIPAFLRPGGAARATLDDLVRHIDHFVELVGIDHVGLGS 260 (313)
T ss_pred cCCE--EEEEeehhhccCCCCCCCCHHHHHHHHHHHHHhcCcceeEecc
Confidence 5553 344333211 1 3456889999999999998899999987
No 192
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=22.76 E-value=4.1e+02 Score=21.36 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
..+.++..++++.-.+.||+.+++.
T Consensus 16 ~~~~~~k~~i~~~L~~~Gv~~iE~g 40 (259)
T cd07939 16 AFSREEKLAIARALDEAGVDEIEVG 40 (259)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 3567888999999999999999996
No 193
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=22.72 E-value=3.2e+02 Score=20.21 Aligned_cols=46 Identities=17% Similarity=0.125 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCC-CEEEEeccCc
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPRE-KVQLATKFGI 95 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~-~~~i~tK~~~ 95 (202)
+.+...++++.+++.|++-+-+.. ..+..+.+.. ++ ++-|..+++.
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~g---------~~i~~~~~~~-~~~~~~v~~~v~~ 57 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVNP---------GYVRLAADAL-AGSDVPVIVVVGF 57 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEECH---------HHHHHHHHHh-CCCCCeEEEEecC
Confidence 678889999999999999887653 2333333322 23 5666666654
No 194
>PF01680 SOR_SNZ: SOR/SNZ family; InterPro: IPR001852 Snz1p is a highly conserved protein involved in growth arrest in Saccharomyces cerevisiae (Baker's yeast) []. Sor1 (singlet oxygen resistance) is essential in pyridoxine (vitamin B6) synthesis in Cercospora nicotianae and Aspergillus flavus. Pyridoxine quenches singlet oxygen at a rate comparable to that of vitamins C and E, two of the most highly efficient biological antioxidants, suggesting a previously unknown role for pyridoxine in active oxygen resistance [].; GO: 0042823 pyridoxal phosphate biosynthetic process; PDB: 2ISS_A 1ZNN_B 2ZBT_B 2NV2_I 2NV1_C 4ADS_C 4ADU_B 4ADT_B 3FEM_F 3O07_A ....
Probab=22.66 E-value=43 Score=26.03 Aligned_cols=15 Identities=40% Similarity=0.488 Sum_probs=11.5
Q ss_pred HHHhHcCCCcccEEE
Q 040066 118 ASLKRLDVEYIDLYY 132 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~ 132 (202)
+.|+.||+||||===
T Consensus 87 qiLealgVD~IDESE 101 (208)
T PF01680_consen 87 QILEALGVDYIDESE 101 (208)
T ss_dssp HHHHHTT-SEEEEET
T ss_pred hhHHHhCCceecccc
Confidence 678999999999643
No 195
>PRK12677 xylose isomerase; Provisional
Probab=22.46 E-value=1e+02 Score=26.76 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=28.0
Q ss_pred ceeeecccCCC----CCCCC-CCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 23 KLGFGCMGLTG----IYNDP-VPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 23 ~lg~Gt~~~~~----~~~~~-~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
+++||.|.+|+ ++|.+ .+.-...++++.+.+.|+..|..-
T Consensus 7 ~f~~~~w~~~~~~~~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh 51 (384)
T PRK12677 7 KFSFGLWTVGWQGRDPFGDATRPPLDPVEAVHKLAELGAYGVTFH 51 (384)
T ss_pred eeEEEEeeccCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCEEEec
Confidence 67889888873 34433 223346678999999999988764
No 196
>PRK05406 LamB/YcsF family protein; Provisional
Probab=22.43 E-value=3.2e+02 Score=22.31 Aligned_cols=81 Identities=15% Similarity=0.212 Sum_probs=44.5
Q ss_pred eeecccCCCCCCCCCCHHHHHHHHHHH-HHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccC-CCCC
Q 040066 25 GFGCMGLTGIYNDPVPVEVGISIIKHA-FDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKF-DMSD 102 (202)
Q Consensus 25 g~Gt~~~~~~~~~~~~~~~~~~~l~~A-~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~-~~~~ 102 (202)
+||.|.+| ++++..+++.-| +.+|. |.|+ ...+-+.++--....+-|....+++.. +=+.
T Consensus 13 ~fG~w~~g-------~D~~lmp~IssANIACG~-------HAGD----p~~M~~tv~lA~~~gV~IGAHPgypD~~gFGR 74 (246)
T PRK05406 13 SFGAWKMG-------DDEALLPLVTSANIACGF-------HAGD----PAVMRRTVRLAKENGVAIGAHPGYPDLEGFGR 74 (246)
T ss_pred CCCCCCCC-------CHHHHHHHhhhHHHhccc-------cCCC----HHHHHHHHHHHHHcCCeEccCCCCCccCCCCC
Confidence 67887764 567777777777 34444 5664 333344443212345556555543322 1133
Q ss_pred cccCCCHHHHHHHHHHHHhHc
Q 040066 103 VVVKGTPEYVRACCEASLKRL 123 (202)
Q Consensus 103 ~~~~~~~~~i~~~~~~sL~~L 123 (202)
.....+++.++..+..-+..|
T Consensus 75 R~m~~s~~el~~~v~yQigAL 95 (246)
T PRK05406 75 RNMDLSPEELYALVLYQIGAL 95 (246)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
Confidence 445678888777766555555
No 197
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated
Probab=22.39 E-value=2.1e+02 Score=25.41 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKI 158 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~v 158 (202)
.+...+.+.+.+++||+...|.+ +......+++.+.+++|++.|.+
T Consensus 90 ~~~~~~~f~~~~~~Lgi~~~d~~----~r~t~~~~~~~~~i~~L~~kG~a 135 (463)
T PRK00260 90 TERYIAAFHEDMDALNVLPPDIE----PRATEHIPEIIELIERLIDKGHA 135 (463)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc----ccccccHHHHHHHHHHHHHCCCE
Confidence 45667889999999999766653 33335677888899999999987
No 198
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=22.30 E-value=4.3e+02 Score=21.46 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCccEEEecCCC
Q 040066 144 DTMGELKKLVEEGKIKYIGLSEAS 167 (202)
Q Consensus 144 ~~~~~l~~l~~~G~vr~iGvsn~~ 167 (202)
++++.++++++.|.--.+|+||-+
T Consensus 186 ~~l~~i~~l~~~~~pil~G~SrkS 209 (257)
T cd00739 186 ELLRRLDELKQLGLPVLVGASRKS 209 (257)
T ss_pred HHHHHHHHHHhCCCcEEEEecccH
Confidence 568888888888887799999965
No 199
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=22.10 E-value=4.5e+02 Score=21.68 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=29.0
Q ss_pred CCCcccEEEeecCCCC-CCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHh
Q 040066 124 DVEYIDLYYQHRVDTT-IPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAH 175 (202)
Q Consensus 124 g~d~iDl~~lh~~~~~-~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 175 (202)
+++.|=+=.+..+... .+..+++++-+.|+++|-+ -+=-++-++-..+++.
T Consensus 104 ~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~-VlPY~~~D~v~a~rLe 155 (267)
T CHL00162 104 DNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFT-VLPYINADPMLAKHLE 155 (267)
T ss_pred CCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCE-EeecCCCCHHHHHHHH
Confidence 4444444444444333 4467999999999999975 2233333443344443
No 200
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=22.09 E-value=5.6e+02 Score=22.68 Aligned_cols=105 Identities=16% Similarity=0.096 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHH-cCCCeeeCcCCcCCCChhHH--HHHHHHhcCCC-CCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 39 VPVEVGISIIKHAFD-QGITFFDTADVYGPNNANEL--LVGKALKQLPR-EKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 39 ~~~~~~~~~l~~A~~-~Gi~~~DtA~~Yg~~g~~e~--~lg~~l~~~~r-~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
.+.++..+++++..+ .+++-+=-+..-.-.-..+. .+-+.|+++|. +.+.|.|+..... +..|..
T Consensus 138 ls~eei~~~i~yI~~~p~I~~VlLSGGDPLll~d~~L~~iL~~L~~IphV~~IRI~TR~pvv~-----------P~RIT~ 206 (417)
T TIGR03820 138 PSKEQILEGIEYIRNTPQIRDVLLSGGDPLLLSDDYLDWILTELRAIPHVEVIRIGTRVPVVL-----------PQRITD 206 (417)
T ss_pred CCHHHHHHHHHHHHhcCCCCEEEEeCCccccCChHHHHHHHHHHhhcCCCceEEEeecccccc-----------ccccCH
Confidence 456788888887776 48875544432221111212 23344445543 3467888875432 233444
Q ss_pred HHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCC
Q 040066 115 CCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGK 157 (202)
Q Consensus 115 ~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~ 157 (202)
.+-+.|++.+ .-.+.+|.-.+..-..++.++++.|++.|.
T Consensus 207 ell~~Lk~~~---~~~v~~h~nhp~Eit~~a~~Al~~L~~aGI 246 (417)
T TIGR03820 207 ELVAILKKHH---PVWLNTHFNHPREITASSKKALAKLADAGI 246 (417)
T ss_pred HHHHHHHhcC---CeEEEEeCCChHhChHHHHHHHHHHHHcCC
Confidence 5555666665 344557765554445789999999999996
No 201
>cd00668 Ile_Leu_Val_MetRS_core catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. Catalytic core domain of isoleucyl, leucyl, valyl and methioninyl tRNA synthetases. These class I enzymes are all monomers. However, in some species, MetRS functions as a homodimer, as a result of an additional C-terminal domain. These enzymes aminoacylate the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. Enzymes in this subfamily share an insertion in the core domain, which is subject to both deletions and rearrangements. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids. MetRS has a significantly shorter insertion, which lacks the editing function.
Probab=22.07 E-value=1.5e+02 Score=24.67 Aligned_cols=48 Identities=21% Similarity=0.199 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhHcCCCccc--EEE-eecCCCCCCHHHHHHHHHHHHHcCCccE
Q 040066 109 PEYVRACCEASLKRLDVEYID--LYY-QHRVDTTIPIEDTMGELKKLVEEGKIKY 160 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iD--l~~-lh~~~~~~~~~~~~~~l~~l~~~G~vr~ 160 (202)
.+...+.+++.+++||+.. | .+. =+.+ ...+.+++.+.+|.++|.|-.
T Consensus 81 ~~~~~~~~~~~l~~lgI~~-Dw~~~~~T~~~---~~~~~v~~~f~~L~~~G~iY~ 131 (312)
T cd00668 81 VEEMSGEHKEDFRRLGISY-DWSDEYITTEP---EYSKAVELIFSRLYEKGLIYR 131 (312)
T ss_pred HHHHHHHHHHHHHHhCccc-cCCCCeECCCH---HHHHHHHHHHHHHHHCCCEEe
Confidence 3567888999999999853 3 222 1211 235688999999999999744
No 202
>TIGR03278 methan_mark_10 putative methanogenesis marker protein 10. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The presence of motifs with seven invariant Cys residues in the N-terminal 50 residues, including three instances of CXXC, would be consistent with function as an oxidoreductase with FeS clusters. The exact function is unknown, but likely is linked to methanogenesis. In most genomes, the member of this family is encoded by a gene next to, and divergently transcribed from, the methyl coenzyme M reductase operon.
Probab=22.01 E-value=5.5e+02 Score=22.55 Aligned_cols=84 Identities=12% Similarity=-0.080 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC---C-CHHHHHHHhcCCCeeE
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE---A-SPDTIRRAHAVHPVTA 182 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn---~-~~~~l~~~~~~~~~~~ 182 (202)
.+.+.+.+.+.+.+.-... ..+-+.+-...+......+.+.++.+++.|.--+|+.+| + +.+.++++.+.. ++.
T Consensus 54 ~t~~evl~ev~~d~~~~~~-~~ggVtisGGGepl~~~~l~eLl~~lk~~gi~taI~~TnG~~l~~~e~~~~L~~~g-ld~ 131 (404)
T TIGR03278 54 IPPQVVLGEVQTSLGFRTG-RDTKVTISGGGDVSCYPELEELTKGLSDLGLPIHLGYTSGKGFDDPEIAEFLIDNG-VRE 131 (404)
T ss_pred CCHHHHHHHHHHHHHHhcC-CCCEEEEECCcccccCHHHHHHHHHHHhCCCCEEEeCCCCcccCCHHHHHHHHHcC-CCE
Confidence 3677788888887765532 356666666655455578889999999999877777455 2 455566665542 355
Q ss_pred EcccCCcccc
Q 040066 183 LQMEWSLWTR 192 (202)
Q Consensus 183 ~q~~~n~~~~ 192 (202)
+++..+..|.
T Consensus 132 v~iSvka~dp 141 (404)
T TIGR03278 132 VSFTVFATDP 141 (404)
T ss_pred EEEecccCCH
Confidence 6666665554
No 203
>PRK14461 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=21.93 E-value=2.9e+02 Score=24.03 Aligned_cols=61 Identities=18% Similarity=0.304 Sum_probs=39.1
Q ss_pred EEeecCCCC-----------CCHHHHHHHHHHHHHc-CC---ccEEEec--CCCHHHHHHH---hcCC------CeeEEc
Q 040066 131 YYQHRVDTT-----------IPIEDTMGELKKLVEE-GK---IKYIGLS--EASPDTIRRA---HAVH------PVTALQ 184 (202)
Q Consensus 131 ~~lh~~~~~-----------~~~~~~~~~l~~l~~~-G~---vr~iGvs--n~~~~~l~~~---~~~~------~~~~~q 184 (202)
+.||.|++. .+++++++++.+..+. |+ +-|+=+. |.+.++..++ +... +..+|-
T Consensus 232 iSLHA~~~e~R~~lmPin~~ypl~eLl~a~~~y~~~t~rrit~EYvLi~gvNDs~e~A~~L~~llk~~~~~~~l~~~VNL 311 (371)
T PRK14461 232 ISLHAPDDALRSELMPVNRRYPIADLMAATRDYIAKTRRRVSFEYVLLQGKNDHPEQAAALARLLRGEAPPGPLLVHVNL 311 (371)
T ss_pred EEeCCCCHHHHHHhcCcccCCCHHHHHHHHHHHHHhhCCEEEEEEEEECCCCCCHHHHHHHHHHHcCCccccCCceEEEE
Confidence 788998653 2478899999988654 43 3333333 4455554444 4444 568899
Q ss_pred ccCCccc
Q 040066 185 MEWSLWT 191 (202)
Q Consensus 185 ~~~n~~~ 191 (202)
++||+..
T Consensus 312 Ip~Np~~ 318 (371)
T PRK14461 312 IPWNPVP 318 (371)
T ss_pred ecCCCCC
Confidence 9999965
No 204
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=21.86 E-value=6.5e+02 Score=23.39 Aligned_cols=45 Identities=20% Similarity=0.357 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcC-----CCeeEEcccC
Q 040066 142 IEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAV-----HPVTALQMEW 187 (202)
Q Consensus 142 ~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~-----~~~~~~q~~~ 187 (202)
+++..+.+++|-..| +.++++-.-+.+|+...++. ..|.++|++=
T Consensus 136 le~A~ElI~~L~~~G-~~yv~fKPGtIeqI~svi~IAka~P~~pIilq~eg 185 (717)
T COG4981 136 LEEAVELIEELGDDG-FPYVAFKPGTIEQIRSVIRIAKANPTFPIILQWEG 185 (717)
T ss_pred HHHHHHHHHHHhhcC-ceeEEecCCcHHHHHHHHHHHhcCCCCceEEEEec
Confidence 578888888888887 47999999889998876543 3567888753
No 205
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=21.75 E-value=6.5e+02 Score=23.31 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCc
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTA 62 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA 62 (202)
+++.++..+++....+.|+..|++.
T Consensus 17 ~~~t~dkl~ia~~L~~~Gv~~IE~~ 41 (582)
T TIGR01108 17 RMRTEDMLPIAEKLDDVGYWSLEVW 41 (582)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEec
Confidence 4677888889988889999999985
No 206
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.67 E-value=4.7e+02 Score=21.73 Aligned_cols=133 Identities=13% Similarity=0.075 Sum_probs=75.4
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCC---------cCCCChh----HHHHHHHHhcCC-CCCEEEEeccCcccCCCCCccc
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADV---------YGPNNAN----ELLVGKALKQLP-REKVQLATKFGIVKFDMSDVVV 105 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~---------Yg~~g~~----e~~lg~~l~~~~-r~~~~i~tK~~~~~~~~~~~~~ 105 (202)
+.++..++.+.+.+.|+..||---. |+ |.. -+.+.+.++.+. .-.+-|+.|+......
T Consensus 73 ~~~~~~~aa~~~~~~G~d~IelN~gcP~~~~~~~~~--Gs~l~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~------ 144 (319)
T TIGR00737 73 DPDTMAEAAKINEELGADIIDINMGCPVPKITKKGA--GSALLRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDD------ 144 (319)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEECCCCHHHhcCCCc--cchHhCCHHHHHHHHHHHHhhcCCCEEEEEEcccCC------
Confidence 5677788888888999999985322 22 221 234444444321 1235567776321110
Q ss_pred CCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCH--HHHHHHHHHHHHcCCccEEEecC-CCHHHHHHHhcCCCeeE
Q 040066 106 KGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPI--EDTMGELKKLVEEGKIKYIGLSE-ASPDTIRRAHAVHPVTA 182 (202)
Q Consensus 106 ~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~--~~~~~~l~~l~~~G~vr~iGvsn-~~~~~l~~~~~~~~~~~ 182 (202)
....+ ..+-+.|+..|+ |.+.+|........ ...|+.+.++++.=.+.-|+... ++++.++++++....+.
T Consensus 145 --~~~~~-~~~a~~l~~~G~---d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~ipvi~nGgI~~~~da~~~l~~~gad~ 218 (319)
T TIGR00737 145 --AHINA-VEAARIAEDAGA---QAVTLHGRTRAQGYSGEANWDIIARVKQAVRIPVIGNGDIFSPEDAKAMLETTGCDG 218 (319)
T ss_pred --CcchH-HHHHHHHHHhCC---CEEEEEcccccccCCCchhHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHhhCCCE
Confidence 11112 234455677785 55556754321111 23477777777765677788777 66788888876555666
Q ss_pred Eccc
Q 040066 183 LQME 186 (202)
Q Consensus 183 ~q~~ 186 (202)
+++-
T Consensus 219 Vmig 222 (319)
T TIGR00737 219 VMIG 222 (319)
T ss_pred EEEC
Confidence 6643
No 207
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=21.65 E-value=3.3e+02 Score=23.97 Aligned_cols=73 Identities=21% Similarity=0.327 Sum_probs=45.4
Q ss_pred HHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEE--------------EecCCCHHHHHHHhcCCC
Q 040066 114 ACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYI--------------GLSEASPDTIRRAHAVHP 179 (202)
Q Consensus 114 ~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~i--------------Gvsn~~~~~l~~~~~~~~ 179 (202)
.+++...++|...-.+++.+|.-... =++||+|+++|.+..+ |+..-.++.++.+.+..-
T Consensus 198 p~V~~~~~~Le~~G~Ev~VFHAtG~G------G~aME~Li~~G~~~~VlDlTttEl~d~l~GGv~sagp~Rl~AA~~~GI 271 (403)
T PF06792_consen 198 PCVDAIRERLEEEGYEVLVFHATGTG------GRAMERLIREGQFDGVLDLTTTELADELFGGVLSAGPDRLEAAARAGI 271 (403)
T ss_pred HHHHHHHHHHHhcCCeEEEEcCCCCc------hHHHHHHHHcCCcEEEEECcHHHHHHHHhCCCCCCCchHHHHHHHcCC
Confidence 34445555554444788999965432 3689999999998655 566666777777766543
Q ss_pred eeEE------cccCCcccc
Q 040066 180 VTAL------QMEWSLWTR 192 (202)
Q Consensus 180 ~~~~------q~~~n~~~~ 192 (202)
|-++ ++.|.+.+.
T Consensus 272 P~Vvs~GalDmVnFg~~~t 290 (403)
T PF06792_consen 272 PQVVSPGALDMVNFGPPDT 290 (403)
T ss_pred CEEEecCccceeccCCccc
Confidence 3222 455555443
No 208
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=21.60 E-value=1.9e+02 Score=24.52 Aligned_cols=44 Identities=18% Similarity=0.244 Sum_probs=28.8
Q ss_pred HHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 118 ASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
..+++||+|- |=+++..|+. .++.+...++|.+.|.+..|=+-+
T Consensus 96 ~~a~~lGvdl-~rllv~~P~~---~E~al~~~e~lirsg~~~lVVvDS 139 (322)
T PF00154_consen 96 EYAESLGVDL-DRLLVVQPDT---GEQALWIAEQLIRSGAVDLVVVDS 139 (322)
T ss_dssp HHHHHTT--G-GGEEEEE-SS---HHHHHHHHHHHHHTTSESEEEEE-
T ss_pred hHHHhcCccc-cceEEecCCc---HHHHHHHHHHHhhcccccEEEEec
Confidence 4567889884 4455555653 568888999999999987775544
No 209
>PF01890 CbiG_C: Cobalamin synthesis G C-terminus; InterPro: IPR002750 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CbiG proteins are specific for anaerobic cobalamin biosynthesis. CbiG, which shows homology with CobE of the aerobic pathway, participates in the conversion of cobalt-precorrin 5 into cobalt-precorrin 6 []. CbiG is responsible for the opening of the delta-lactone ring and extrusion of the C2-unit []. The aerobic pathway uses molecular oxygen to trigger the events at C-20 leading to contraction and expulsion of the C2-unit as acetic acid from a metal-free intermediate, whereas the anaerobic route involves the internal delivery of oxygen from a carboxylic acid terminus to C-20 followed by extrusion of the C2-unit as acetaldehyde, using cobalt complexes as substrates []. This entry represents the core domain of CibG.; GO: 0009236 cobalamin biosynthetic process; PDB: 3BY5_A 2W6K_A 2W6L_A 3EEQ_B.
Probab=21.50 E-value=3e+02 Score=19.49 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHh
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAH 175 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~ 175 (202)
.+.+.|.+.+++.|+..+.+.-++-.+-.++...+-..+.+ +.++=. +-+-.|+.++|....
T Consensus 12 ~~~~~i~~ai~~~l~~~~~~~~~i~~iasi~~K~~E~~l~~----~A~~l~---~~~~~~~~eeL~~~~ 73 (121)
T PF01890_consen 12 APAEEIEEAIEQALAEAGLSPRSIAAIASIDIKADEPGLLE----LAEELG---IPLRFFSAEELNAVE 73 (121)
T ss_dssp --HHHHHHHHHHHHHHCT--GGGEEEEEESSSSS--HHHHH----HHHHCT---SEEEEE-HHHHHCHH
T ss_pred CCHHHHHHHHHHHHHHcCCChhhccEEEeccccCCCHHHHH----HHHHhC---CCeEEECHHHHhcCC
Confidence 47899999999999999998888888877765433222222 222211 344445667766543
No 210
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=21.46 E-value=2e+02 Score=20.76 Aligned_cols=51 Identities=10% Similarity=0.135 Sum_probs=33.0
Q ss_pred HHHHHHHHhHcCCCcccEEEeecCCCCC-CHHHHHHHHHHHHHcCCccEEEe
Q 040066 113 RACCEASLKRLDVEYIDLYYQHRVDTTI-PIEDTMGELKKLVEEGKIKYIGL 163 (202)
Q Consensus 113 ~~~~~~sL~~Lg~d~iDl~~lh~~~~~~-~~~~~~~~l~~l~~~G~vr~iGv 163 (202)
+..+++.|+.+....+|+++++..+... +..++...++.|.+.--|+-+-+
T Consensus 54 Rp~l~~ll~~~~~g~vd~vvv~~ldRl~R~~~d~~~~~~~l~~~~gv~l~~~ 105 (140)
T cd03770 54 RPGFNRMIEDIEAGKIDIVIVKDMSRLGRNYLKVGLYMEILFPKKGVRFIAI 105 (140)
T ss_pred CHHHHHHHHHHHcCCCCEEEEeccchhccCHHHHHHHHHHHHhhcCcEEEEe
Confidence 3456666666666789999998876643 24566777777777623344443
No 211
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=21.37 E-value=3.1e+02 Score=21.85 Aligned_cols=41 Identities=17% Similarity=0.194 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCC
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLP 83 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~ 83 (202)
+.+++.++.++.++.|++.++..-.-.. +.+.|...-++.+
T Consensus 23 ~~e~a~~~a~Ali~gGi~~IEITl~sp~---a~e~I~~l~~~~p 63 (211)
T COG0800 23 DVEEALPLAKALIEGGIPAIEITLRTPA---ALEAIRALAKEFP 63 (211)
T ss_pred CHHHHHHHHHHHHHcCCCeEEEecCCCC---HHHHHHHHHHhCc
Confidence 6799999999999999999998765554 5666666555543
No 212
>cd00812 LeuRS_core catalytic core domain of leucyl-tRNA synthetases. Leucyl tRNA synthetase (LeuRS) catalytic core domain. This class I enzyme is a monomer which aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. In Aquifex aeolicus, the gene encoding LeuRS is split in two, just before the KMSKS motif. Consequently, LeuRS is a heterodimer, which likely superimposes with the LeuRS monomer found in most other organisms. LeuRS has an insertion in the core domain, which is subject to both deletions and rearrangements and thus differs between prokaryotic LeuRS and archaeal/eukaryotic LeuRS. This editing region hydrolyzes mischarged cognate tRNAs and thus prevents the incorporation of chemically similar amino acids.
Probab=21.36 E-value=1.4e+02 Score=24.86 Aligned_cols=49 Identities=22% Similarity=0.116 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCc
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKI 158 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~v 158 (202)
.+...+.+.+.+++||++ +|....-........+-+...+.+|.++|.|
T Consensus 68 ~~~~~~~~~~~~~~lgi~-~d~~~~~~t~~~~~~~~v~~~f~~L~~~G~i 116 (314)
T cd00812 68 TEYNIKKMKEQLKRMGFS-YDWRREFTTCDPEYYKFTQWLFLKLYEKGLA 116 (314)
T ss_pred HHHHHHHHHHHHHHhccc-eecccccccCCHHHHHHHHHHHHHHHHCCCE
Confidence 466788899999999985 5632111111112234567788899999986
No 213
>PF00101 RuBisCO_small: Ribulose bisphosphate carboxylase, small chain; InterPro: IPR000894 RuBisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) is a bifunctional enzyme that catalyses both the carboxylation and oxygenation of ribulose-1,5-bisphosphate (RuBP) [], thus fixing carbon dioxide as the first step of the Calvin cycle. RuBisCO is the major protein in the stroma of chloroplasts, and in higher plants exists as a complex of 8 large and 8 small subunits. The function of the small subunit is unknown []. While the large subunit is coded for by a single gene, the small subunit is coded for by several different genes, which are distributed in a tissue specific manner. They are transcriptionally regulated by light receptor phytochrome [], which results in RuBisCO being more abundant during the day when it is required. The RuBisCo small subunit consists of a central four-stranded beta-sheet, with two helices packed against it [].; PDB: 1BWV_W 1IWA_P 3AXM_X 1WDD_S 3AXK_T 1IR2_K 1RBL_N 1UZH_J 1RSC_P 1UW9_C ....
Probab=21.28 E-value=2.9e+02 Score=19.09 Aligned_cols=75 Identities=23% Similarity=0.141 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCCe-eeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHH
Q 040066 37 DPVPVEVGISIIKHAFDQGITF-FDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRAC 115 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~-~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~ 115 (202)
++..+++..+-|++.+..|.+. ++.|+.- ..|....-..|.+... ..+++.+...
T Consensus 9 P~l~~~~i~~Qv~~ll~qG~~i~iE~ad~r----------------~~r~~~W~mW~~p~~~--------~~~~~~Vl~e 64 (99)
T PF00101_consen 9 PPLTDEEIAKQVRYLLSQGWIIGIEHADPR----------------RFRTSYWQMWKLPMFG--------CTDPAQVLAE 64 (99)
T ss_dssp S---HHHHHHHHHHHHHTT-EEEEEEESCG----------------GSTSSS-EEESSEBTT--------BSSHHHHHHH
T ss_pred CCCCHHHHHHHHHhhhhcCceeeEEecCCC----------------CCCCCEeecCCCCCcC--------CCCHHHHHHH
Confidence 3456889999999999999887 6655421 1233344444443221 2267889999
Q ss_pred HHHHHhHcCCCcccEEEeec
Q 040066 116 CEASLKRLDVEYIDLYYQHR 135 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~ 135 (202)
+++.++.---+||-|+=+..
T Consensus 65 l~~c~~~~p~~yVRlig~D~ 84 (99)
T PF00101_consen 65 LEACLAEHPGEYVRLIGFDN 84 (99)
T ss_dssp HHHHHHHSTTSEEEEEEEET
T ss_pred HHHHHHhCCCceEEEEEEcC
Confidence 99999988778888765553
No 214
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=21.25 E-value=5.3e+02 Score=22.09 Aligned_cols=27 Identities=15% Similarity=0.238 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHHHHHHcCCCeeeCcC
Q 040066 37 DPVPVEVGISIIKHAFDQGITFFDTAD 63 (202)
Q Consensus 37 ~~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (202)
...+.++..++++...+.||+.++...
T Consensus 17 ~~~s~~~k~~ia~~L~~~Gv~~IEvG~ 43 (363)
T TIGR02090 17 VSLTVEQKVEIARKLDELGVDVIEAGF 43 (363)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEeC
Confidence 345678888999999999999999753
No 215
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.11 E-value=5.9e+02 Score=22.79 Aligned_cols=149 Identities=10% Similarity=0.091 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHHHH-cCCCee---eCcCCcCCCChhHHHHHHHHhcC-CCCCEEEEeccCcccCCCCCcccCCCHHHHHH
Q 040066 40 PVEVGISIIKHAFD-QGITFF---DTADVYGPNNANELLVGKALKQL-PREKVQLATKFGIVKFDMSDVVVKGTPEYVRA 114 (202)
Q Consensus 40 ~~~~~~~~l~~A~~-~Gi~~~---DtA~~Yg~~g~~e~~lg~~l~~~-~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~ 114 (202)
+.+...+-++...+ .|+++| |-...... ....+++-..++.. ..-.+.+.+.+..... +.+.++.
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~-~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~---------d~ell~~ 292 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFFILADEEPTINR-KKFQEFCEEIIARNPISVTWGINTRVTDIVR---------DADILHL 292 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEecccccCH-HHHHHHHHHHHhcCCCCeEEEEecccccccC---------CHHHHHH
Q ss_pred HHHHHHhHc--CCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccE----EEecCCCHHHHHHHhcC-CCeeEEcccC
Q 040066 115 CCEASLKRL--DVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKY----IGLSEASPDTIRRAHAV-HPVTALQMEW 187 (202)
Q Consensus 115 ~~~~sL~~L--g~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~----iGvsn~~~~~l~~~~~~-~~~~~~q~~~ 187 (202)
.-+.-+.++ |++..|=-.+....-....++..++++.+++.|.... +|+-+.+.+.+++.++. ......++.+
T Consensus 293 l~~aG~~~v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~ 372 (497)
T TIGR02026 293 YRRAGLVHISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANW 372 (497)
T ss_pred HHHhCCcEEEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEE
Q ss_pred Ccccccccccc
Q 040066 188 SLWTREIEDEI 198 (202)
Q Consensus 188 n~~~~~~~~~l 198 (202)
+.+.+-+...+
T Consensus 373 ~~~tP~PGT~l 383 (497)
T TIGR02026 373 LMYTPWPFTSL 383 (497)
T ss_pred EEecCCCCcHH
No 216
>PF10941 DUF2620: Protein of unknown function DUF2620; InterPro: IPR021238 This is a bacterial family of proteins with unknown function.
Probab=21.07 E-value=1.1e+02 Score=21.90 Aligned_cols=103 Identities=15% Similarity=0.112 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHHHHHHHH
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEYVRACCE 117 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~ 117 (202)
..++++..++++.. |-.-|++.- - +.-.-...++. ..-++||.. .....+ -++-
T Consensus 8 ql~K~ei~~~i~~~---~~~~~ev~i-~-----sDmeAAm~vK~-G~aDYY~GA----CnTGgG------------gALa 61 (117)
T PF10941_consen 8 QLDKEEIAELIEKL---GPGKVEVTI-K-----SDMEAAMAVKS-GQADYYLGA----CNTGGG------------GALA 61 (117)
T ss_pred ccCHHHHHHHHHHH---CCCcEEEEE-e-----chHHHHHHhhc-CCcCEeEee----cCCCcc------------HHHH
Confidence 35778888887776 333334332 1 22222334454 344667632 222211 2344
Q ss_pred HHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHH
Q 040066 118 ASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRR 173 (202)
Q Consensus 118 ~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~ 173 (202)
-...-||.+ -..-+..|..... -+.+++++++|| +++|+++...++...
T Consensus 62 mAIallG~~--~C~Tvs~pg~~~~----eeeI~~~v~~GK-~AFGft~~hie~vvP 110 (117)
T PF10941_consen 62 MAIALLGYG--KCATVSMPGKIPS----EEEIRKEVAEGK-KAFGFTAQHIEQVVP 110 (117)
T ss_pred HHHHHhCcc--ceeEeecCCCCCC----HHHHHHHHHcCC-eeeeccHHHHHHHHH
Confidence 555667754 3444555543222 235567889999 699998876666544
No 217
>COG1540 Uncharacterized proteins, homologs of lactam utilization protein B [General function prediction only]
Probab=21.03 E-value=1.2e+02 Score=24.55 Aligned_cols=42 Identities=14% Similarity=0.072 Sum_probs=26.8
Q ss_pred eeecccCCCC--------------CCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC
Q 040066 25 GFGCMGLTGI--------------YNDPVPVEVGISIIKHAFDQGITFFDTADVYGP 67 (202)
Q Consensus 25 g~Gt~~~~~~--------------~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~ 67 (202)
|||.|.+|.. -....|+....+.++.|.+.|+..= .-+.|.+
T Consensus 13 ~fG~w~mG~De~~l~lvsSANIACGfHAGDp~~M~rtV~lA~e~gV~IG-AHPgyPD 68 (252)
T COG1540 13 GFGAWRMGDDEALLPLVSSANIACGFHAGDPLTMRRTVRLAKENGVAIG-AHPGYPD 68 (252)
T ss_pred ccCCcccCCcHHHHHHHhhhhHhhcccCCCHHHHHHHHHHHHHcCCeec-cCCCCcc
Confidence 5888887741 1244567777888888888887643 2334554
No 218
>PLN03233 putative glutamate-tRNA ligase; Provisional
Probab=21.02 E-value=5.9e+02 Score=23.27 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=41.4
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRA 174 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~ 174 (202)
......+++.+.|+.||.++ |-.. -....++...+++++|+++|++ | +|..+.+++++.
T Consensus 58 ~~~e~~~~I~~dL~WLGl~w-D~~~----~qSdr~~~y~~~a~~Li~~G~A-Y--~C~cs~eel~~~ 116 (523)
T PLN03233 58 EKAEFEESIIEDLGKIEIKP-DSVS----FTSDYFEPIRCYAIILIEEGLA-Y--MDDTPQEEMKKE 116 (523)
T ss_pred cchHHHHHHHHHHHHhCCCC-CCCc----cccccHHHHHHHHHHHHHcCCe-E--ecCCCHHHHHHH
Confidence 34567788999999999875 5211 1224477888999999999995 3 355667777554
No 219
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=20.82 E-value=1e+02 Score=16.34 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=13.0
Q ss_pred HHHHHHHHHcCCCeeeC
Q 040066 45 ISIIKHAFDQGITFFDT 61 (202)
Q Consensus 45 ~~~l~~A~~~Gi~~~Dt 61 (202)
.+..+.++++|+..|=|
T Consensus 10 ~~~~~~~l~~GVDgI~T 26 (30)
T PF13653_consen 10 PASWRELLDLGVDGIMT 26 (30)
T ss_dssp HHHHHHHHHHT-SEEEE
T ss_pred HHHHHHHHHcCCCEeeC
Confidence 35679999999999866
No 220
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=20.79 E-value=56 Score=32.07 Aligned_cols=34 Identities=9% Similarity=0.156 Sum_probs=25.0
Q ss_pred HHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHH
Q 040066 111 YVRACCEASLKRLDVEYIDLYYQHRVDTTIPIED 144 (202)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~ 144 (202)
.=++++......-+-.++||+-|..|+.+..++.
T Consensus 8 ~eRe~la~iiqqWNaNRLDLF~lS~PtEdLefhG 41 (1629)
T KOG1892|consen 8 EEREKLADIIQQWNANRLDLFELSQPTEDLEFHG 41 (1629)
T ss_pred hHHHHHHHHHHHhcccccceeeccCCCccceeee
Confidence 3456677777777888999999999977654433
No 221
>COG4034 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.73 E-value=1.9e+02 Score=24.07 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHHHHhHcCCCcccEEEeecCCC--CCCHHHHHHHHHHHHHc-CCccEEEecCCCHHHHHHHhcC-------CCeeEEcc
Q 040066 116 CEASLKRLDVEYIDLYYQHRVDT--TIPIEDTMGELKKLVEE-GKIKYIGLSEASPDTIRRAHAV-------HPVTALQM 185 (202)
Q Consensus 116 ~~~sL~~Lg~d~iDl~~lh~~~~--~~~~~~~~~~l~~l~~~-G~vr~iGvsn~~~~~l~~~~~~-------~~~~~~q~ 185 (202)
.-.||.+++-+-. ++-+|.+.. +.+.+...+.+.+..++ |....+|++.-..+-++.+.+. .++..+..
T Consensus 162 ~lasL~k~~e~g~-~L~V~g~GsDGEL~~eyllrriseia~egGlLg~~gl~r~d~ell~~l~~~v~TEAS~ipl~Af~G 240 (328)
T COG4034 162 SLASLAKVEEDGV-ELAVMGPGSDGELSREYLLRRISEIAREGGLLGTVGLDRRDVELLEKLVKDVTTEASKIPLRAFKG 240 (328)
T ss_pred HHHHHHhhcccce-EEEEEecCCCCceeHHHHHHHHHHHHhhCCeeeeeccchhHHHHHHHHHHHHhhhhhhccHHHhcc
Confidence 4567888875533 777777744 35577888888877655 7788888877776666666432 35556666
Q ss_pred cCCcccc
Q 040066 186 EWSLWTR 192 (202)
Q Consensus 186 ~~n~~~~ 192 (202)
+|.+..-
T Consensus 241 e~G~~~I 247 (328)
T COG4034 241 EYGPAHI 247 (328)
T ss_pred cccchhh
Confidence 6666553
No 222
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=20.72 E-value=2.6e+02 Score=25.67 Aligned_cols=41 Identities=20% Similarity=0.203 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhcCCC
Q 040066 139 TIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHAVHP 179 (202)
Q Consensus 139 ~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~~~~ 179 (202)
..+.+++.+.+.+.++..+|+.||+-++...++..+++...
T Consensus 409 ~id~~~I~ew~~~~~~~~~i~~v~~D~~g~~~~~~~l~~~g 449 (546)
T COG4626 409 LIDYAEIVEWFMEIREKFLIKLVGFDPSGAGEFRDALAEAG 449 (546)
T ss_pred ccCHHHHHHHHHHHHHhCCccEEeecccchHHHHHHHHhCC
Confidence 34567899999999999999999999999999888776543
No 223
>PF11821 DUF3341: Protein of unknown function (DUF3341); InterPro: IPR021776 This family of proteins are functionally uncharacterised. This family is found in bacteria. Proteins in this family are about 170 amino acids in length.
Probab=20.67 E-value=1.6e+02 Score=22.54 Aligned_cols=36 Identities=14% Similarity=0.184 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHH
Q 040066 40 PVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVG 76 (202)
Q Consensus 40 ~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg 76 (202)
++++..++++...+.|++.+|+=.-|.- +.-++.+|
T Consensus 11 ~~~~l~~A~~~~r~~G~~~~d~ytPfPv-hgld~alg 46 (173)
T PF11821_consen 11 DPEALLHAARKLRDAGYRIWDVYTPFPV-HGLDEALG 46 (173)
T ss_pred CHHHHHHHHHHHHHcCCceeEEeCCCcC-cCHHHHhC
Confidence 6788899999999999999997666665 33445555
No 224
>COG3287 Uncharacterized conserved protein [Function unknown]
Probab=20.54 E-value=1.9e+02 Score=25.21 Aligned_cols=53 Identities=17% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecC
Q 040066 111 YVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSE 165 (202)
Q Consensus 111 ~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn 165 (202)
...+.+++.-+.++.+..|+.++=..+...+..++.++|.+.... +..||.|+
T Consensus 14 d~~~v~~e~~~~~~~~~~~~~~ifF~~~~~~~~~l~~~l~~~~pg--~~liGCST 66 (379)
T COG3287 14 DAESVIEEMARQLGSDRSDFVLIFFSPERDEHVQLASALKQAFPG--ICLIGCST 66 (379)
T ss_pred CHHHHHHHHHHhhCcCCCCeEEEEeccccccHHHHHHHHHhhCCC--CeEecccc
Confidence 356678888899999999999987766655555777777665544 66788875
No 225
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=20.45 E-value=4.4e+02 Score=21.31 Aligned_cols=57 Identities=14% Similarity=0.172 Sum_probs=42.5
Q ss_pred HHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCccEEEecCCCHHHHHHHhc
Q 040066 117 EASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIKYIGLSEASPDTIRRAHA 176 (202)
Q Consensus 117 ~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~~l~~~~~ 176 (202)
.+.+...+...=|++..-.....+ .++..+++.+++.| +.-|++++.....+.+..+
T Consensus 108 ~~~l~a~~l~~~DvvI~IS~SG~T--~~vi~al~~Ak~~G-a~~I~It~~~~s~L~~~aD 164 (257)
T cd05007 108 AADLQAINLTERDVVIGIAASGRT--PYVLGALRYARARG-ALTIGIACNPGSPLLQLAD 164 (257)
T ss_pred HHHHHHcCCCCCCEEEEEeCCCCC--HHHHHHHHHHHHCC-CeEEEEECCCCChhHHhCC
Confidence 344555666677999887666544 47999999999998 7799999988777766543
No 226
>PRK14463 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=20.42 E-value=5.5e+02 Score=21.96 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=52.1
Q ss_pred cCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHH-cCC---ccEEEecCCC-HHHHHHHhcCCC
Q 040066 105 VKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVE-EGK---IKYIGLSEAS-PDTIRRAHAVHP 179 (202)
Q Consensus 105 ~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~-~G~---vr~iGvsn~~-~~~l~~~~~~~~ 179 (202)
..++.+.|.+++.......+++++ ++.-.-++...++++.++++.+.+ .|. .+.+-||+.. .+.+.++.....
T Consensus 129 r~lt~~EI~~qv~~~~~~~~i~~I--vfmG~GEPl~n~~~vi~~l~~l~~~~gl~~s~r~itVsTnGl~~~i~~l~~~~~ 206 (349)
T PRK14463 129 RNLTTAEIVNQVCAVKRDVPVRNI--VFMGMGEPLANLDNVIPALQILTDPDGLQFSTRKVTVSTSGLVPEMEELGREVT 206 (349)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEE--EEecCCcchhcHHHHHHHHHHhhcccccCcCCceEEEECCCchHHHHHHhhccC
Confidence 346888898888877766554433 333333444567788999988875 565 5788887754 345666554332
Q ss_pred eeEEcccCCcccc
Q 040066 180 VTALQMEWSLWTR 192 (202)
Q Consensus 180 ~~~~q~~~n~~~~ 192 (202)
..+.+..|..+.
T Consensus 207 -~~LaiSL~a~~~ 218 (349)
T PRK14463 207 -VNLAVSLNATTD 218 (349)
T ss_pred -eEEEEeCCCCCH
Confidence 233455555544
No 227
>PRK11893 methionyl-tRNA synthetase; Reviewed
Probab=20.41 E-value=1.6e+02 Score=26.18 Aligned_cols=48 Identities=17% Similarity=0.232 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIK 159 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr 159 (202)
.+...+.+++.|++||++ .|.+. ..........+.+.+.+|.++|.+-
T Consensus 69 ~~~~~~~~~~~l~~l~I~-~D~~~--~t~~~~~~~~v~~~~~~L~~~G~iY 116 (511)
T PRK11893 69 ADRNSAAFKRLWEALNIS-YDDFI--RTTDPRHKEAVQEIFQRLLANGDIY 116 (511)
T ss_pred HHHHHHHHHHHHHHhCCC-cCCce--eCCCHHHHHHHHHHHHHHHHCCCEE
Confidence 456778899999999987 57432 1222224668889999999999963
No 228
>PRK14536 cysS cysteinyl-tRNA synthetase; Provisional
Probab=20.34 E-value=2.8e+02 Score=25.05 Aligned_cols=47 Identities=21% Similarity=0.256 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHHHHcCCcc
Q 040066 109 PEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKLVEEGKIK 159 (202)
Q Consensus 109 ~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l~~~G~vr 159 (202)
.+...+.+.+.+++|++.+.|.+ |....+++++.+.+++|++.|.+=
T Consensus 100 a~~~~~~f~~d~~~Lni~~~~~~----~rat~hi~~ii~~i~~L~~kG~aY 146 (490)
T PRK14536 100 AAHYTAAFFRDTARLNIERPSIV----CNATEHIQDMIALIKRLEARGHTY 146 (490)
T ss_pred HHHHHHHHHHHHHHcCCCCCcee----cCcccHHHHHHHHHHHHHHCCCEE
Confidence 35677889999999999887765 334566889999999999999863
No 229
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=20.32 E-value=4.4e+02 Score=20.82 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCeeeCcC
Q 040066 38 PVPVEVGISIIKHAFDQGITFFDTAD 63 (202)
Q Consensus 38 ~~~~~~~~~~l~~A~~~Gi~~~DtA~ 63 (202)
..+.++..++++...+.|+..++...
T Consensus 15 ~~s~e~~~~i~~~L~~~GV~~IEvg~ 40 (265)
T cd03174 15 TFSTEDKLEIAEALDEAGVDSIEVGS 40 (265)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEecc
Confidence 34678899999999999999999764
No 230
>PRK10200 putative racemase; Provisional
Probab=20.25 E-value=4.5e+02 Score=20.86 Aligned_cols=61 Identities=21% Similarity=0.057 Sum_probs=43.3
Q ss_pred CHHHHHHHHHHHHhHcCCCcccEEEeecCCCC------------CCHHHHHHHHHHHHHcCCccEEEecCCCHH
Q 040066 108 TPEYVRACCEASLKRLDVEYIDLYYQHRVDTT------------IPIEDTMGELKKLVEEGKIKYIGLSEASPD 169 (202)
Q Consensus 108 ~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~------------~~~~~~~~~l~~l~~~G~vr~iGvsn~~~~ 169 (202)
+.+..++-++..-.+.+.++++.+.++.++.. .+...+.+.++.|.+.| +..|-+...++.
T Consensus 15 T~~~~~~i~~~t~a~~d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~l~~~~~~L~~~g-~~~iviaCNTah 87 (230)
T PRK10200 15 TIPYYRLINEGIKQRLGGLHSAQLLLHSVDFHEIEECQRRGEWDKTGDILAEAALGLQRAG-AEGIVLCTNTMH 87 (230)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCeEEEeCCChHHHHHHHHCCCcchHHHHHHHHHHHHHHcC-CCEEEECCchHH
Confidence 45666777777778899999999999987421 12345667777777776 678888776644
No 231
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=20.14 E-value=3.6e+02 Score=24.31 Aligned_cols=69 Identities=16% Similarity=0.138 Sum_probs=46.8
Q ss_pred ccceeeecccCCC----CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhc---CCCCCEEE
Q 040066 21 VSKLGFGCMGLTG----IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQ---LPREKVQL 89 (202)
Q Consensus 21 vs~lg~Gt~~~~~----~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~---~~r~~~~i 89 (202)
|.++.+|.-++.. ..+...+.+++.++++.|-+.|+..+-+--.+|-||++.+.+-+.++. .+.+.+.+
T Consensus 280 v~RISIGvQS~~d~vLk~igR~ht~e~v~~ai~~ar~~Gf~~In~DLI~GLPgEt~ed~~~tl~~l~~L~pd~isv 355 (488)
T PRK08207 280 VDRISINPQTMNDETLKAIGRHHTVEDIIEKFHLAREMGFDNINMDLIIGLPGEGLEEVKHTLEEIEKLNPESLTV 355 (488)
T ss_pred CCeEEEcCCcCCHHHHHHhCCCCCHHHHHHHHHHHHhCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhcCcCEEEE
Confidence 4467777654432 235556789999999999999996665555677668888877776654 34454443
No 232
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=20.12 E-value=5.1e+02 Score=21.46 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=40.1
Q ss_pred HHHHHHHHhcCCCCCE-EEEeccCcccCCCCCcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCC
Q 040066 72 ELLVGKALKQLPREKV-QLATKFGIVKFDMSDVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVD 137 (202)
Q Consensus 72 e~~lg~~l~~~~r~~~-~i~tK~~~~~~~~~~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~ 137 (202)
-..+.+..+.+|.+++ |+.--...++.. -+.+.|++-..+.+..|...+++++.+-+-.
T Consensus 18 LsVlrei~~~LP~e~~iY~~D~a~~PYG~-------ks~e~I~~~~~~i~~~l~~~~ik~lVIACNT 77 (269)
T COG0796 18 LSVLREIRRQLPDEDIIYVGDTARFPYGE-------KSEEEIRERTLEIVDFLLERGIKALVIACNT 77 (269)
T ss_pred HHHHHHHHHHCCCCcEEEEecCCCCCCCC-------CCHHHHHHHHHHHHHHHHHcCCCEEEEecch
Confidence 3455555566676665 454444333332 2688999999999999987789999998754
No 233
>COG2040 MHT1 Homocysteine/selenocysteine methylase (S-methylmethionine-dependent) [Amino acid transport and metabolism]
Probab=20.11 E-value=5.3e+02 Score=21.68 Aligned_cols=95 Identities=14% Similarity=0.131 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHcCCCeeeCcCCcCC-C-ChhH----HHHHHHHh----------c-CCCCCEEEEeccCcccCCCCC-
Q 040066 41 VEVGISIIKHAFDQGITFFDTADVYGP-N-NANE----LLVGKALK----------Q-LPREKVQLATKFGIVKFDMSD- 102 (202)
Q Consensus 41 ~~~~~~~l~~A~~~Gi~~~DtA~~Yg~-~-g~~e----~~lg~~l~----------~-~~r~~~~i~tK~~~~~~~~~~- 102 (202)
++-.+++-...+++|-+.++|+. |.. + +-+| +.+.+.++ + ...+...|.--++|....-.+
T Consensus 42 peiv~~vh~df~~aGa~ii~T~T-Yqa~~~~~~e~~~~~~~~~l~~~sv~la~~ard~~g~~~~~iagsiGP~ga~~a~E 120 (300)
T COG2040 42 PEIVRNVHADFLRAGADIITTAT-YQATPEGFAERVSEDEAKQLIRRSVELARAARDAYGEENQNIAGSLGPYGAALADE 120 (300)
T ss_pred HHHHHHHHHHHHHhcCcEEeehh-hhcCHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhcccccccceeccchhhhcChh
Confidence 56677888888999999999984 665 1 1122 22222221 1 223344466666665432221
Q ss_pred --cccCCCHHHHHHHHHHHHhHcCCCcccEEEeecC
Q 040066 103 --VVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRV 136 (202)
Q Consensus 103 --~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~ 136 (202)
..+..+.+.+.+-.+.-++.|.-.-+|++.+-..
T Consensus 121 y~g~Y~~~~d~~~~fh~~rie~l~~ag~Dlla~ETi 156 (300)
T COG2040 121 YRGDYGASQDALYKFHRPRIEALNEAGADLLACETL 156 (300)
T ss_pred hcCccCccHHHHHHHHHHHHHHHHhCCCcEEeeccc
Confidence 1123455656555666667776666999888754
No 234
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=20.10 E-value=1.1e+02 Score=27.61 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=34.1
Q ss_pred Cccccce-eeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCe---eeCcCCcC
Q 040066 18 GFEVSKL-GFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITF---FDTADVYG 66 (202)
Q Consensus 18 g~~vs~l-g~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~---~DtA~~Yg 66 (202)
-++.|.| ..|+++. .....++++.+++++|.-.|||+ |||..|-|
T Consensus 229 ~~~~PeL~~kGaYs~----~~vYT~eDv~evV~yarlRGIRVlpEfD~PgHt~ 277 (542)
T KOG2499|consen 229 SPTFPELHRKGAYSP----RHVYTREDVSEVVEYARLRGIRVLPEFDTPGHTG 277 (542)
T ss_pred cCCchhhhhcCCCCc----ceeecHHHHHHHHHHHHhccceeeecccCCcccc
Confidence 4566777 7787653 23467899999999999999998 67776655
No 235
>PRK07027 cobalamin biosynthesis protein CbiG; Provisional
Probab=20.05 E-value=2.7e+02 Score=19.90 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHhHcCCCcccEEEeecCCCC
Q 040066 107 GTPEYVRACCEASLKRLDVEYIDLYYQHRVDTT 139 (202)
Q Consensus 107 ~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~ 139 (202)
.+.+.|.+.+++.|+..+.+.-++-.+..++..
T Consensus 14 ~~~e~i~~ai~~~L~~~~l~~~si~~lasi~~K 46 (126)
T PRK07027 14 VPAEQIEAAIRAALAQRPLASADVRVVATLDLK 46 (126)
T ss_pred CCHHHHHHHHHHHHHHcCCCHHHhheeEehhhh
Confidence 478999999999999999876666666666543
No 236
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=20.03 E-value=3e+02 Score=22.48 Aligned_cols=126 Identities=11% Similarity=-0.000 Sum_probs=59.4
Q ss_pred CCccccceeeecccCCCCCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCCCChhHHHHHHHHhcCCCCCEEEEeccCcc
Q 040066 17 QGFEVSKLGFGCMGLTGIYNDPVPVEVGISIIKHAFDQGITFFDTADVYGPNNANELLVGKALKQLPREKVQLATKFGIV 96 (202)
Q Consensus 17 ~g~~vs~lg~Gt~~~~~~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~~g~~e~~lg~~l~~~~r~~~~i~tK~~~~ 96 (202)
+|.++-.-|..-.......|...+++...+-+...-+.|+|.|=|+ +|.. +++.+-.+ .+-.++|..-....
T Consensus 11 NGk~~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~-h~p~---~~~~~~~c----D~~GilV~~e~~~~ 82 (298)
T PF02836_consen 11 NGKPIFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTH-HYPP---SPRFYDLC----DELGILVWQEIPLE 82 (298)
T ss_dssp TTEEE-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEET-TS-----SHHHHHHH----HHHT-EEEEE-S-B
T ss_pred CCEEEEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcc-cccC---cHHHHHHH----hhcCCEEEEecccc
Confidence 3555555555433332234556778888888888889999999996 5665 67766544 23345554433221
Q ss_pred cCCC----C----CcccCCCHHHHHHHHHHHHhHcCCCcccEEEeecCCCCCCHHHHHHHHHHH
Q 040066 97 KFDM----S----DVVVKGTPEYVRACCEASLKRLDVEYIDLYYQHRVDTTIPIEDTMGELKKL 152 (202)
Q Consensus 97 ~~~~----~----~~~~~~~~~~i~~~~~~sL~~Lg~d~iDl~~lh~~~~~~~~~~~~~~l~~l 152 (202)
.... + ........+.+.+.+++..++.. .+.-+++.--- .+......++.|.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-NHPSIi~W~~g-NE~~~~~~~~~l~~~ 144 (298)
T PF02836_consen 83 GHGSWQDFGNCNYDADDPEFRENAEQELREMVRRDR-NHPSIIMWSLG-NESDYREFLKELYDL 144 (298)
T ss_dssp SCTSSSSTSCTSCTTTSGGHHHHHHHHHHHHHHHHT-T-TTEEEEEEE-ESSHHHHHHHHHHHH
T ss_pred ccCccccCCccccCCCCHHHHHHHHHHHHHHHHcCc-CcCchheeecC-ccCccccchhHHHHH
Confidence 0000 0 00001123456677777777775 56666554322 222333444444444
No 237
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=20.02 E-value=3.5e+02 Score=22.14 Aligned_cols=100 Identities=19% Similarity=0.197 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHcCCCeeeCcCCcCC--CChhHHHHHHHHhcCCCCCEEEEeccCcccCCCCCcccCCCHHH
Q 040066 34 IYNDPVPVEVGISIIKHAFDQGITFFDTADVYGP--NNANELLVGKALKQLPREKVQLATKFGIVKFDMSDVVVKGTPEY 111 (202)
Q Consensus 34 ~~~~~~~~~~~~~~l~~A~~~Gi~~~DtA~~Yg~--~g~~e~~lg~~l~~~~r~~~~i~tK~~~~~~~~~~~~~~~~~~~ 111 (202)
++..+.+.+...++++.+.+.|...|=-++..|. |....+++....+..| ++- ++.+.+..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~~----i~~H~Hnd----------- 203 (274)
T cd07938 141 PYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFP--DEK----LALHFHDT----------- 203 (274)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCC--CCe----EEEEECCC-----------
Confidence 3445567888899999999999888855544444 2333344444333332 222 22222221
Q ss_pred HHHHHHHHHhHc--CCCcccEEEeec---C-----CCCCCHHHHHHHHH
Q 040066 112 VRACCEASLKRL--DVEYIDLYYQHR---V-----DTTIPIEDTMGELK 150 (202)
Q Consensus 112 i~~~~~~sL~~L--g~d~iDl~~lh~---~-----~~~~~~~~~~~~l~ 150 (202)
.--++.+++..+ |.+++|.=+.-- | ....+.++++..|+
T Consensus 204 ~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~ 252 (274)
T cd07938 204 RGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLE 252 (274)
T ss_pred CChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHH
Confidence 112333444333 778888755421 1 12245677777775
Done!