BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040067
(195 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FEZ|A Chain A, Mycobacterium Tuberculosis Embr
pdb|2FF4|A Chain A, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
pdb|2FF4|B Chain B, Mycobacterium Tuberculosis Embr In Complex With Low
Affinity Phosphopeptide
Length = 388
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRS 142
+ + + +GRL + D+V+ A VS HA I G + ++ DL S+NG + +R+RS
Sbjct: 301 YPLQAAATRIGRLHDN-DIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRS 359
Query: 143 GVVAVASPGSRITFGDTHLAMFRVS 167
V + G I D H F++S
Sbjct: 360 AV--TLNDGDHIRICD-HEFTFQIS 381
>pdb|2XT9|B Chain B, Crystal Structure Of Mycobacterium Smegmatis Alpha-
Ketoglutarate Decarboxylase In Complex With Gara
Length = 115
Score = 34.7 bits (78), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 4/88 (4%)
Query: 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRS 142
F + + GR P+ +D+ + TVS HA + +G V D+ S NGT+++ + + S
Sbjct: 26 FLLDQPTTSAGRHPD-SDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVNREPVDS 84
Query: 143 GVVAVASPGSRITFGDTHLAMFRVSKID 170
V+A G + G L K D
Sbjct: 85 AVLA---NGDEVQIGKFRLVFLTGPKSD 109
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 33.5 bits (75), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 11/90 (12%)
Query: 90 VTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
+ VGR+ ++ I A +S H RI+ + ++ DL S+NGT ++ L
Sbjct: 35 IRVGRIVRGNEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTLLNSNAL--------D 86
Query: 150 PGSRITFGD---THLAMFRVSKIDTVEAPS 176
P + + GD L + ++ V PS
Sbjct: 87 PETSVNLGDGDVIKLGEYTSILVNFVSGPS 116
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 33.1 bits (74), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Query: 92 VGRLPERADMVIPVATVSGLHARI--QKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
GR P+ D I + S +HA + K + + DL+ST+GTF+ RL
Sbjct: 59 FGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTFLGHIRLEPHKPQQIP 118
Query: 150 PGSRITFG 157
S ++FG
Sbjct: 119 IDSTVSFG 126
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 33.1 bits (74), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 92 VGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLR 141
VG P+ AD+V+ ++S HA+I D S+L+ DL S NG ++ +++
Sbjct: 29 VGSDPQVADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVIVEGRKIE 79
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVA 146
+ GR P+ +D+ + TVS HA + + + V D+ S NGT+++ + + S V+A
Sbjct: 55 SAGRHPD-SDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLA 109
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 33/56 (58%), Gaps = 1/56 (1%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVA 146
+ GR P+ +D+ + TVS HA + + + V D+ S NGT+++ + + S V+A
Sbjct: 78 SAGRHPD-SDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVNREPVDSAVLA 132
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 31.2 bits (69), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 12/85 (14%)
Query: 86 ASTEVTVGRLPERADMVIPVATVSGLHARIQKK-----------GDSLLVTDLDSTNGTF 134
++ GRL D+ + +VS HA +Q + G + DL ST+GTF
Sbjct: 39 GTSYCLFGRL-SGCDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLYDLGSTHGTF 97
Query: 135 IDEKRLRSGVVAVASPGSRITFGDT 159
+++ R+ G + FG +
Sbjct: 98 LNKTRIPPRTYCRVHVGHVVRFGGS 122
>pdb|2KB3|A Chain A, Nmr Structure Of The Phosphorylated Form Of Odhi, Podhi
Length = 143
Score = 30.8 bits (68), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASP 150
T GR PE +D+ + TVS HA + V D+ S NGT+++ + + V+
Sbjct: 69 TAGRHPE-SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRNAQVMQT--- 124
Query: 151 GSRITFGDTHLAMF 164
G I G L
Sbjct: 125 GDEIQIGKFRLVFL 138
>pdb|2KB4|A Chain A, Nmr Structure Of The Unphosphorylated Form Of Odhi, Odhi
Length = 143
Score = 30.4 bits (67), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASP 150
T GR PE +D+ + TVS HA + V D+ S NGT+++ + + V+
Sbjct: 69 TAGRHPE-SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVNREPRNAQVMQT--- 124
Query: 151 GSRITFGDTHLAMF 164
G I G L
Sbjct: 125 GDEIQIGKFRLVFL 138
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 9/90 (10%)
Query: 55 VAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMV-IPVATVSGLHA 113
VA W Q + + H+G KV +P I + +T RL AD+ +P + A
Sbjct: 177 VAGSHWEDQLASEKKSGHLGGKVLIPTQQHIRT--LTSARLA--ADVADVPTVVI----A 228
Query: 114 RIQKKGDSLLVTDLDSTNGTFIDEKRLRSG 143
R + +L+ +D+D + FI +R R G
Sbjct: 229 RTDAEAATLITSDVDERDQPFITGERTREG 258
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 30.4 bits (67), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 9/90 (10%)
Query: 55 VAAERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMV-IPVATVSGLHA 113
VA W Q + H+G KV +P I + +T RL AD+ +P + A
Sbjct: 177 VAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRT--LTSARLA--ADVADVPTVVI----A 228
Query: 114 RIQKKGDSLLVTDLDSTNGTFIDEKRLRSG 143
R + +L+ +D+D + FI +R R G
Sbjct: 229 RTDAEAATLITSDVDERDQPFITGERTREG 258
>pdb|3OUN|A Chain A, Crystal Structure Of The Fhaa Fha Domain Complexed With
The Intracellular Domain Of Rv3910
Length = 157
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDE 137
+++ +GR + A +P VS H I+ G L+ DL+STNGT ++
Sbjct: 80 YQLREGSNIIGR-GQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNN 133
>pdb|2LC1|A Chain A, Rv0020c_fha Structure
Length = 100
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDE 137
+++ +GR + A +P VS H I+ G L+ DL+STNGT ++
Sbjct: 21 YQLREGSNIIGR-GQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNN 74
>pdb|3PO8|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
pdb|3POA|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
Length = 100
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDE 137
+++ +GR + A +P VS H I+ G L+ DL+STNGT ++
Sbjct: 18 YQLREGSNIIGR-GQDAQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNN 71
>pdb|3M1U|A Chain A, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Dvu_0896) From Desulfovibrio
Vulgaris Hildenborough At 1.75 A Resolution
pdb|3M1U|B Chain B, Crystal Structure Of A Putative Gamma-D-Glutamyl-L-Diamino
Acid Endopeptidase (Dvu_0896) From Desulfovibrio
Vulgaris Hildenborough At 1.75 A Resolution
Length = 434
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 70 TSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSG 110
T+HIG +P+ A ++ T + R PE +V+PV SG
Sbjct: 226 TAHIGTVLPLSGASQVGRTVLVPVRAPEGHAVVVPVLLTSG 266
>pdb|1G3G|A Chain A, Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 164
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
T GR P + ++ +S H +I D +LL+ D+ STNGT+++ +++ + S
Sbjct: 67 TFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLS 125
Query: 150 PGSRITFG 157
G IT G
Sbjct: 126 QGDEITVG 133
>pdb|1J4P|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1J4Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1K3N|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1K3Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1J4O|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
pdb|1K3J|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 151
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
T GR P + ++ +S H +I D +LL+ D+ STNGT+++ +++ + S
Sbjct: 54 TFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLS 112
Query: 150 PGSRITFG 157
G IT G
Sbjct: 113 QGDEITVG 120
>pdb|2JQI|A Chain A, Nmr Structure Of The Rad53 Fha1 Domain In Complex With A
Phosphothreonien Peptide Derived From Rad53 Scd1
pdb|2A0T|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Biological Relevant Phosphopeptide Derived From Madt1
Length = 151
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
T GR P + ++ +S H +I D +LL+ D+ STNGT+++ +++ + S
Sbjct: 54 TFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLS 112
Query: 150 PGSRITFG 157
G IT G
Sbjct: 113 QGDEITVG 120
>pdb|1G6G|A Chain A, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
pdb|1G6G|B Chain B, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
Length = 127
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 91 TVGRLPERADMVIPVATVSGLHARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVAS 149
T GR P + ++ +S H +I D +LL+ D+ STNGT+++ +++ + S
Sbjct: 39 TFGRNPACDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLS 97
Query: 150 PGSRITFG 157
G IT G
Sbjct: 98 QGDEITVG 105
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 21/46 (45%)
Query: 119 GDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMF 164
GDS++ D++ GT I R V V G RI+ G L F
Sbjct: 313 GDSVIAEDVNFGAGTLIANLRFDEKEVKVNVKGKRISSGRRKLGAF 358
>pdb|2RA1|A Chain A, Crystal Structure Of The N-Terminal Part Of The Bacterial
S-Layer Protein Sbsc
Length = 412
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 70 TSHIGFKVPMPDAFEIASTEVTVGRLPERADM-VIPVATVSGLHARIQKKGDSLLVTDLD 128
T+ + P+P AS +LPE + + + TV + K G L T +
Sbjct: 320 TNEFTYNKPVP-----ASITFNFNKLPEDSAVDLTKYVTVKDAAGNVIKSGFELEFTSSE 374
Query: 129 S-TNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAM 163
T G FI+ +S +V G+ +T G+ LA+
Sbjct: 375 KLTQGKFINTTGKKSVIVNATVKGTNVTTGNVILAV 410
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.129 0.356
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,049,636
Number of Sequences: 62578
Number of extensions: 181825
Number of successful extensions: 278
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 27
length of query: 195
length of database: 14,973,337
effective HSP length: 94
effective length of query: 101
effective length of database: 9,091,005
effective search space: 918191505
effective search space used: 918191505
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.5 bits)