Query 040067
Match_columns 195
No_of_seqs 235 out of 1691
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 07:11:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040067.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040067hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h87_A Kanadaptin; FHA domain 99.9 1.5E-24 5.1E-29 164.4 13.1 94 58-161 19-124 (130)
2 1uht_A Expressed protein; FHA 99.9 4.5E-24 1.5E-28 158.8 12.4 103 57-169 10-114 (118)
3 3gqs_A Adenylate cyclase-like 99.9 3.8E-23 1.3E-27 151.1 13.6 95 58-164 3-100 (106)
4 2xt9_B Putative signal transdu 99.9 1.2E-22 3.9E-27 150.7 14.4 93 57-162 9-101 (115)
5 1mzk_A Kinase associated prote 99.9 1E-22 3.5E-27 155.8 13.9 104 58-171 6-124 (139)
6 2kb3_A Oxoglutarate dehydrogen 99.9 1.8E-22 6.2E-27 155.3 15.0 94 57-163 44-137 (143)
7 3po8_A RV0020C protein, putati 99.9 2.4E-22 8.3E-27 145.3 13.0 82 81-167 16-97 (100)
8 3va4_A Mediator of DNA damage 99.9 1.6E-22 5.6E-27 153.5 12.4 95 61-165 26-125 (132)
9 2kfu_A RV1827 PThr 22; FHA dom 99.9 6.3E-22 2.2E-26 155.1 15.7 93 57-162 53-145 (162)
10 1r21_A Antigen KI-67; beta san 99.9 5.1E-22 1.7E-26 149.7 11.4 80 81-163 26-105 (128)
11 2jqj_A DNA damage response pro 99.9 2E-21 6.7E-26 150.6 14.9 87 81-170 30-125 (151)
12 3hx1_A SLR1951 protein; P74513 99.9 1.1E-21 3.9E-26 148.6 13.1 85 81-169 23-117 (131)
13 2jpe_A Nuclear inhibitor of pr 99.9 2.9E-23 9.8E-28 159.0 3.4 99 58-166 33-134 (140)
14 2pie_A E3 ubiquitin-protein li 99.9 3.9E-21 1.3E-25 146.8 13.8 90 57-158 7-102 (138)
15 1gxc_A CHK2, CDS1, serine/thre 99.9 4.6E-21 1.6E-25 148.2 13.4 99 58-169 28-141 (149)
16 3oun_A Putative uncharacterize 99.9 2.5E-21 8.6E-26 150.8 10.9 78 81-162 78-155 (157)
17 1lgp_A Cell cycle checkpoint p 99.9 1.6E-21 5.6E-26 144.4 8.9 90 59-159 3-96 (116)
18 1g3g_A Protien kinase SPK1; FH 99.8 1E-20 3.4E-25 148.5 12.1 91 58-159 32-135 (164)
19 3els_A PRE-mRNA leakage protei 99.8 6.5E-21 2.2E-25 148.8 10.8 97 58-159 30-145 (158)
20 2csw_A Ubiquitin ligase protei 99.8 6.1E-21 2.1E-25 146.9 10.3 90 57-158 15-110 (145)
21 1dmz_A Protein (protein kinase 99.8 2.2E-20 7.7E-25 145.7 13.5 86 81-169 18-125 (158)
22 3elv_A PRE-mRNA leakage protei 99.8 2.3E-20 8E-25 150.7 11.4 97 58-159 77-192 (205)
23 1qu5_A Protein kinase SPK1; FH 99.8 1.2E-20 4.3E-25 150.4 8.6 85 81-168 42-148 (182)
24 1wln_A Afadin; beta sandwich, 99.8 7.2E-20 2.5E-24 136.5 11.1 78 81-161 29-108 (120)
25 1g6g_A Protein kinase RAD53; b 99.8 2.6E-19 8.7E-24 134.8 12.4 72 87-160 35-108 (127)
26 2ff4_A Probable regulatory pro 99.8 6.2E-19 2.1E-23 154.8 13.6 79 81-162 299-377 (388)
27 4ejq_A Kinesin-like protein KI 99.8 2.4E-18 8.1E-23 133.7 11.5 98 59-164 38-141 (154)
28 3fm8_A Kinesin-like protein KI 99.8 4.6E-18 1.6E-22 127.7 10.7 96 58-164 25-121 (124)
29 3huf_A DNA repair and telomere 99.7 1E-16 3.5E-21 136.4 11.9 101 60-170 2-115 (325)
30 4a0e_A YSCD, type III secretio 99.7 4.5E-16 1.5E-20 116.0 12.8 94 57-164 2-96 (123)
31 3uv0_A Mutator 2, isoform B; F 99.5 1.8E-14 6E-19 103.2 8.5 74 86-166 19-99 (102)
32 3i6u_A CDS1, serine/threonine- 99.5 1.1E-13 3.8E-18 121.5 10.9 99 58-169 8-121 (419)
33 4egx_A Kinesin-like protein KI 99.4 1.6E-12 5.6E-17 103.5 12.0 97 59-164 68-171 (184)
34 3kt9_A Aprataxin; FHA domain, 99.4 2.9E-12 9.8E-17 92.8 12.1 91 60-166 5-98 (102)
35 1yj5_C 5' polynucleotide kinas 99.3 9.2E-12 3.1E-16 94.5 10.2 91 58-163 8-104 (143)
36 2brf_A Bifunctional polynucleo 99.3 1.4E-11 4.7E-16 90.2 9.9 88 59-161 9-100 (110)
37 1wv3_A Similar to DNA segregat 99.1 4.7E-11 1.6E-15 98.6 6.2 74 83-163 87-166 (238)
38 1ujx_A Polynucleotide kinase 3 99.1 5.5E-11 1.9E-15 88.0 5.9 89 58-161 15-109 (119)
39 1wv3_A Similar to DNA segregat 85.7 1 3.4E-05 36.4 4.9 40 81-124 13-54 (238)
40 1p9k_A ORF, hypothetical prote 59.7 4.4 0.00015 26.6 1.9 31 131-162 46-76 (79)
41 2k5p_A THis protein, thiamine- 59.5 3.6 0.00012 27.3 1.4 25 132-156 36-62 (78)
42 2cu3_A Unknown function protei 58.7 5.4 0.00019 25.0 2.1 24 133-156 32-57 (64)
43 2q5w_D Molybdopterin convertin 58.4 6.5 0.00022 25.2 2.5 23 132-156 48-70 (77)
44 3mml_A Allophanate hydrolase s 58.3 14 0.00048 31.2 5.1 46 113-159 63-109 (318)
45 2k6p_A Uncharacterized protein 57.9 7.7 0.00026 26.0 2.9 26 131-158 26-51 (92)
46 2hj1_A Hypothetical protein; s 57.7 4 0.00014 28.4 1.4 25 130-156 58-82 (97)
47 3po0_A Small archaeal modifier 56.3 7.8 0.00027 25.7 2.7 23 132-156 60-82 (89)
48 2kl0_A Putative thiamin biosyn 54.4 3 0.0001 27.3 0.3 25 132-156 32-58 (73)
49 1ryj_A Unknown; beta/alpha pro 53.5 13 0.00045 23.6 3.4 22 133-156 42-63 (70)
50 1fm0_D Molybdopterin convertin 53.3 11 0.00036 24.4 2.9 22 133-156 53-74 (81)
51 3hvz_A Uncharacterized protein 52.5 8.3 0.00028 25.6 2.3 23 132-156 43-65 (78)
52 1tyg_B YJBS; alpha beta barrel 50.9 6.9 0.00024 26.6 1.7 24 133-156 55-80 (87)
53 1dm9_A Hypothetical 15.5 KD pr 50.8 13 0.00043 27.1 3.2 24 131-156 34-57 (133)
54 2k9x_A Tburm1, uncharacterized 50.6 5.8 0.0002 28.2 1.3 24 133-156 70-95 (110)
55 1vjk_A Molybdopterin convertin 48.4 9.7 0.00033 25.9 2.2 22 133-156 70-91 (98)
56 1wgk_A Riken cDNA 2900073H19 p 48.0 5 0.00017 28.6 0.6 24 133-156 76-101 (114)
57 3dwg_C 9.5 kDa culture filtrat 45.0 13 0.00045 24.8 2.4 24 133-156 61-86 (93)
58 2l52_A Methanosarcina acetivor 43.2 7.5 0.00026 26.7 0.9 27 130-156 64-92 (99)
59 3rpf_C Molybdopterin convertin 42.1 12 0.00042 24.0 1.8 23 133-156 45-67 (74)
60 2g1e_A Hypothetical protein TA 42.0 11 0.00039 24.7 1.7 24 133-156 58-83 (90)
61 1rws_A Hypothetical protein PF 41.4 5.7 0.00019 26.0 0.0 23 132-156 48-70 (77)
62 2qjl_A URM1, ubiquitin-related 40.3 17 0.00058 24.7 2.4 24 133-156 67-92 (99)
63 1f0z_A THis protein; ubiquitin 38.8 10 0.00036 23.7 1.0 24 133-156 34-59 (66)
64 3oep_A Putative uncharacterize 38.2 39 0.0013 30.2 5.0 32 128-159 295-326 (494)
65 1c05_A Ribosomal protein S4 de 31.9 36 0.0012 25.4 3.2 27 131-159 76-103 (159)
66 1ok0_A Tendamistat, alpha-amyl 31.3 68 0.0023 20.9 3.9 45 112-159 10-59 (74)
67 2kmm_A Guanosine-3',5'-BIS(dip 28.4 35 0.0012 21.2 2.3 22 133-156 39-60 (73)
68 2eki_A DRG 1, developmentally- 28.1 17 0.00057 25.1 0.7 22 133-156 63-84 (93)
69 3u7z_A Putative metal binding 26.8 42 0.0014 23.3 2.6 22 135-156 73-95 (101)
70 1v8c_A MOAD related protein; r 25.7 39 0.0013 25.5 2.4 25 132-156 54-80 (168)
71 1h3f_A Tyrosyl-tRNA synthetase 24.7 68 0.0023 27.9 4.1 36 129-165 392-429 (432)
72 2vqe_D 30S ribosomal protein S 21.5 70 0.0024 25.0 3.2 27 131-159 124-151 (209)
No 1
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=164.44 Aligned_cols=94 Identities=24% Similarity=0.420 Sum_probs=82.5
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECC-CeEEEcCCCCCCCEEeCCCCcCccceEEEE-----------ECCEEEEE
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAS-TEVTVGRLPERADMVIPVATVSGLHARIQK-----------KGDSLLVT 125 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~-~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~-----------~~~~~~l~ 125 (195)
..|.|++..+|... ..+.|.. ..++|||+++ |||+|+++.|||+||.|.+ .++.|+|+
T Consensus 19 ~~~~L~v~k~g~~~---------~~~~L~~~~~~~IGR~~~-~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~~~~~l~ 88 (130)
T 4h87_A 19 APYSLETLKGGTIL---------GTRSLKGTSYCLFGRLSG-CDVCLEHPSVSRYHAVLQHRASGPDGECDSNGPGFYLY 88 (130)
T ss_dssp SCCEEEEEETTEEE---------EEEECTTCSEEEEESSTT-SSEECCCTTSCSSCEEEEEBCCCCCC------CCEEEE
T ss_pred CCEEEEEEECCeee---------eeEEeCCCceEEEcCCcC-CCEEeCCCCcchhcEEEEEecccCccceeccCCcceEe
Confidence 46999998888765 5678875 4589999998 9999999999999999975 34679999
Q ss_pred eCCCCCceEECCEEccCCceEECCCCCEEEECCceE
Q 040067 126 DLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHL 161 (195)
Q Consensus 126 Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~ 161 (195)
|++|+|||||||++|.++.++.|++||+|+||....
T Consensus 89 Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str 124 (130)
T 4h87_A 89 DLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTR 124 (130)
T ss_dssp ECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSE
T ss_pred eCCCCCceEECCEECCCCceeECCCCCEEEECCceE
Confidence 999999999999999998899999999999999765
No 2
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.91 E-value=4.5e-24 Score=158.84 Aligned_cols=103 Identities=22% Similarity=0.334 Sum_probs=90.8
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEECC-CeEEEcCC-CCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceE
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIAS-TEVTVGRL-PERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTF 134 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~-~~~~IGR~-~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~ 134 (195)
.+.|.|....+...+ +.|.|.. ..++|||. ++ |||+|+++.||++||+|.++++.|+|+|++|+||||
T Consensus 10 ~p~l~L~v~~g~~~g---------~~~~l~~~~~~~iGR~~~~-~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGT~ 79 (118)
T 1uht_A 10 TPSLRLVFVKGPREG---------DALDYKPGSTIRVGRIVRG-NEIAIKDAGISTKHLRIESDSGNWVIQDLGSSNGTL 79 (118)
T ss_dssp SCEEEEEESSSTTTT---------CBCCBCTTCCEEEESSSTT-CSEECCSSSSCTTCEEEEECSSSEEEECCCCSSCCE
T ss_pred CCeEEEEEEeCCCCC---------cEEEECCCCEEEEcCCCCC-CCEEeCCCCCchHHeEEEEECCEEEEEECCCCCCeE
Confidence 466788887766554 5677776 57999999 66 999999999999999999999999999999999999
Q ss_pred ECCEEccCCceEECCCCCEEEECCceEEEEEeecc
Q 040067 135 IDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKI 169 (195)
Q Consensus 135 VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~~~~~~ 169 (195)
|||++|.+++++.|++||+|+||...+.++++...
T Consensus 80 vng~~l~~~~~~~L~~gd~i~lG~~~~~~~~~~~~ 114 (118)
T 1uht_A 80 LNSNALDPETSVNLGDGDVIKLGEYTSILVNFVSG 114 (118)
T ss_dssp ESSSBCCTTCEEECCTTEEEEETTTEEEEEEEECS
T ss_pred ECCEECCCCCeEEcCCCCEEEECCeEEEEEEEecC
Confidence 99999998888999999999999999878877654
No 3
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.90 E-value=3.8e-23 Score=151.09 Aligned_cols=95 Identities=26% Similarity=0.470 Sum_probs=84.7
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECCC-eEEEcCCC-CCCCEEeCCCCcCccceEEEEE-CCEEEEEeCCCCCceE
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAST-EVTVGRLP-ERADMVIPVATVSGLHARIQKK-GDSLLVTDLDSTNGTF 134 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~-~~~IGR~~-~~~di~l~~~~VSr~Ha~I~~~-~~~~~l~Dl~S~nGT~ 134 (195)
..|.|.+..+...+ +.|.|..+ .++|||++ + |||+|+++.||++||+|.+. ++.|+|+|++|+||||
T Consensus 3 ~~~~L~v~~G~~~g---------~~~~l~~~~~~~iGR~~~~-~di~l~d~~vSr~Ha~i~~~~~~~~~l~Dl~S~nGt~ 72 (106)
T 3gqs_A 3 SRFLLKVLAGANIG---------AEFHLDSGKTYIVGSDPQV-ADIVLSDMSISRQHAKIIIGNDNSVLIEDLGSKNGVI 72 (106)
T ss_dssp CEEEEEECC-CCTT---------CEEEECTTCEEEEESCTTT-CSEECCCTTSCSSCEEEEECTTSCEEEEECSCSSCCE
T ss_pred ceEEEEEEeCCCCc---------EEEEECCCCEEEEeECCCc-CCEEeCCCCcchhhcEEEECCCCcEEEEECcCCCCeE
Confidence 57999998877765 78999875 58999998 6 99999999999999999999 6889999999999999
Q ss_pred ECCEEccCCceEECCCCCEEEECCceEEEE
Q 040067 135 IDEKRLRSGVVAVASPGSRITFGDTHLAMF 164 (195)
Q Consensus 135 VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~ 164 (195)
|||+++.. +..|++||+|+||.+.+.+.
T Consensus 73 vng~~i~~--~~~L~~Gd~i~~G~~~~~~~ 100 (106)
T 3gqs_A 73 VEGRKIEH--QSTLSANQVVALGTTLFLLV 100 (106)
T ss_dssp ETTEECSS--EEECCTTCCEEETTEEEEEE
T ss_pred ECCEECCC--CeECCCCCEEEECCEEEEEE
Confidence 99999997 68999999999999988543
No 4
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.90 E-value=1.2e-22 Score=150.66 Aligned_cols=93 Identities=27% Similarity=0.443 Sum_probs=83.5
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEEC
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFID 136 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VN 136 (195)
...|.|+...+...+ ..|.|....++|||.++ |||+|+++.||++||+|.+.++.|+|+|++|+||||||
T Consensus 9 ~~~~~L~v~~g~~~g---------~~~~l~~~~~~IGR~~~-~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vn 78 (115)
T 2xt9_B 9 SGSALLVVKRGPNAG---------SRFLLDQPTTSAGRHPD-SDIFLDDVTVSRRHAEFRLEGGEFQVVDVGSLNGTYVN 78 (115)
T ss_dssp CSCEEEEEEESTTTT---------CEEEECSSEEEEESSTT-SSEECCSTTSCSSCEEEEEETTEEEEEECSCSSCEEET
T ss_pred CCcEEEEEEeCCCCC---------eEEEECCCCEEECCCCC-CCEEeCCcccChhheEEEEECCEEEEEECCCCCCeEEC
Confidence 356777776665544 77999999999999998 99999999999999999999999999999999999999
Q ss_pred CEEccCCceEECCCCCEEEECCceEE
Q 040067 137 EKRLRSGVVAVASPGSRITFGDTHLA 162 (195)
Q Consensus 137 g~~l~~~~~~~L~~gd~I~lG~~~~~ 162 (195)
|+++.+ ..|++||+|+||.+.+.
T Consensus 79 g~~i~~---~~L~~gd~i~iG~~~l~ 101 (115)
T 2xt9_B 79 REPVDS---AVLANGDEVQIGKFRLV 101 (115)
T ss_dssp TEECSE---EEECTTCEEEETTEEEE
T ss_pred CEEcce---EECCCCCEEEECCEEEE
Confidence 999984 89999999999998773
No 5
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.89 E-value=1e-22 Score=155.80 Aligned_cols=104 Identities=24% Similarity=0.360 Sum_probs=90.5
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECCC-----eEEEcCCCCCCCEEeCCCCcCccceEEEEECC--EEEEEeCCCC
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAST-----EVTVGRLPERADMVIPVATVSGLHARIQKKGD--SLLVTDLDST 130 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~-----~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~--~~~l~Dl~S~ 130 (195)
..|.|.+..+...+ ..|.|... .++|||.++ |||+|+++.||++||+|.++++ .|+|+|++|+
T Consensus 6 ~~~~L~v~~G~~~g---------~~~~l~~~~~~~~~~~IGR~~~-~di~l~d~~VSr~Ha~i~~~~~~~~~~l~DlgS~ 75 (139)
T 1mzk_A 6 SWLFLEVIAGPAIG---------LQHAVNSTSSSKLPVKLGRVSP-SDLALKDSEVSGKHAQITWNSTKFKWELVDMGSL 75 (139)
T ss_dssp EEEEEEECSSTTCS---------CEEEECTTCSTTCSEEEESSSS-CSEECCCTTSSSEEEEEEEETTTTEEEEEETTCS
T ss_pred CeEEEEEEeCCCCC---------eEEEecCCCCccceEEeeCCCC-CCEEeCCCCCChHHcEEEEECCCCEEEEEECCCC
Confidence 45778887776655 78999875 799999998 9999999999999999999984 7999999999
Q ss_pred CceEECCEEccC--------CceEECCCCCEEEECCceEEEEEeeccCc
Q 040067 131 NGTFIDEKRLRS--------GVVAVASPGSRITFGDTHLAMFRVSKIDT 171 (195)
Q Consensus 131 nGT~VNg~~l~~--------~~~~~L~~gd~I~lG~~~~~~~~~~~~~~ 171 (195)
|||||||+++.. +.++.|++||+|+||.+.+.++++....+
T Consensus 76 NGT~vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~~~~~~~ 124 (139)
T 1mzk_A 76 NGTLVNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNE 124 (139)
T ss_dssp SCCEETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEEEEECCC
T ss_pred CCEEECCEECcCcccccccCCceEECCCCCEEEECCEEEEEEEcCCCcc
Confidence 999999999984 56799999999999999997777755543
No 6
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.89 E-value=1.8e-22 Score=155.25 Aligned_cols=94 Identities=28% Similarity=0.401 Sum_probs=85.1
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEEC
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFID 136 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VN 136 (195)
...|.|++..+...+ ..|.|....++|||.++ |||+|+++.||++||+|.+.++.|+|+|++|+||||||
T Consensus 44 ~~~~~L~v~~G~~~g---------~~~~L~~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~~~~~l~DlgS~NGT~VN 113 (143)
T 2kb3_A 44 AGSALLVVKRGPNAG---------ARFLLDQPTTTAGRHPE-SDIFLDDVTVSRRHAEFRINEGEFEVVDVGSLNGTYVN 113 (143)
T ss_dssp SSCEEEEEEESTTTT---------CEEEECSSEEEESSCTT-CSBCCCCSSCCSSSEEEEEETTEEEEEESCCSSCCEET
T ss_pred CccEEEEEEeCCCCC---------eEEEeCCCCeeccCCCC-CCEEeCCCCcChhhEEEEEECCEEEEEECCCcCCeEEC
Confidence 456888887766554 78999999999999998 99999999999999999999999999999999999999
Q ss_pred CEEccCCceEECCCCCEEEECCceEEE
Q 040067 137 EKRLRSGVVAVASPGSRITFGDTHLAM 163 (195)
Q Consensus 137 g~~l~~~~~~~L~~gd~I~lG~~~~~~ 163 (195)
|++|.+ +.|++||+|+||...+.|
T Consensus 114 g~~i~~---~~L~~GD~I~iG~~~l~f 137 (143)
T 2kb3_A 114 REPRNA---QVMQTGDEIQIGKFRLVF 137 (143)
T ss_dssp TEECSE---EECCTTEEEEETTEEEEE
T ss_pred CEEcce---EECCCCCEEEECCEEEEE
Confidence 999984 899999999999988743
No 7
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.89 E-value=2.4e-22 Score=145.30 Aligned_cols=82 Identities=26% Similarity=0.449 Sum_probs=76.1
Q ss_pred ceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCce
Q 040067 81 DAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTH 160 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~ 160 (195)
+.|+|..+.++|||.++ |||+++++.||++||.|.++++.|+|+|++|+|||||||+++.+ +.|++||+|+||...
T Consensus 16 ~~~~l~~~~~~IGR~~~-~di~l~d~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~~---~~L~~gd~i~iG~~~ 91 (100)
T 3po8_A 16 RTYQLREGSNIIGRGQD-AQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQE---WQLADGDVIRLGHSE 91 (100)
T ss_dssp CEEECCSEEEEEESSTT-CSEECCCTTSCSSCEEEEECSSCEEEEECSCSSCCEETTEECSE---EECCTTCEEEETTEE
T ss_pred cEEEECCCCEEEeCCCC-CCEECCCCCcChhhCEEEEeCCEEEEEECCCCCCEEECCEECce---EECCCCCEEEECCEE
Confidence 67999999999999998 99999999999999999999999999999999999999999974 899999999999988
Q ss_pred EEEEEee
Q 040067 161 LAMFRVS 167 (195)
Q Consensus 161 ~~~~~~~ 167 (195)
+ .|++.
T Consensus 92 ~-~~~~~ 97 (100)
T 3po8_A 92 I-IVRMH 97 (100)
T ss_dssp E-EEEEE
T ss_pred E-EEEEE
Confidence 8 45543
No 8
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.89 E-value=1.6e-22 Score=153.53 Aligned_cols=95 Identities=25% Similarity=0.328 Sum_probs=83.4
Q ss_pred EEEEccCCC-cceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEE--CCEEEEEeCCCCCceEECC
Q 040067 61 LLQPVGDGD-TSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKK--GDSLLVTDLDSTNGTFIDE 137 (195)
Q Consensus 61 ~L~~~~~g~-~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~--~~~~~l~Dl~S~nGT~VNg 137 (195)
.|++..++. .+ +.|+|..+.++|||.++ |||+|+++.|||+||+|.+. ++.|+|+|++|+|||||||
T Consensus 26 ~L~v~~g~~~~g---------~~~~L~~~~~~IGR~~~-~di~l~d~~VSr~HA~i~~~~~~~~~~l~Dl~S~NGT~vNg 95 (132)
T 3va4_A 26 QLRLFSGTHGPE---------RDFPLYLGKNVVGRSPD-CSVALPFPSISKQHAVIEISAWNKAPILQDCGSLNGTQIVK 95 (132)
T ss_dssp EEEECCBTTBSC---------EEEEECSEEEEEESSTT-SSEECCCTTSCTTCEEEEECSTTSCCEEEECSCSSCEEETT
T ss_pred EEEEEeCCCCCc---------eEEEECCCCEEEccCCC-CCEEeCCCCcChhHEEEEEEcCCCEEEEEECCCCCCeEECC
Confidence 566666555 33 78999999999999998 99999999999999999997 5889999999999999999
Q ss_pred EE--ccCCceEECCCCCEEEECCceEEEEE
Q 040067 138 KR--LRSGVVAVASPGSRITFGDTHLAMFR 165 (195)
Q Consensus 138 ~~--l~~~~~~~L~~gd~I~lG~~~~~~~~ 165 (195)
++ |.++.++.|++||+|+||.+.+.|.+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~ 125 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFADFPCQYHR 125 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETTEEEEEEE
T ss_pred EEcccCCCCEEECCCCCEEEECCEEEEEEE
Confidence 97 67777899999999999999985544
No 9
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.88 E-value=6.3e-22 Score=155.15 Aligned_cols=93 Identities=26% Similarity=0.413 Sum_probs=83.4
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEEC
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFID 136 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VN 136 (195)
...|.|++..+...+ ..|.|....++|||.++ |||+|+++.|||+||+|.+.++.|+|+|++|+||||||
T Consensus 53 ~~~~~L~v~~G~~~g---------~~~~L~~~~~~IGR~~~-~di~l~d~~VSr~HA~I~~~~~~~~l~DlgS~NGT~VN 122 (162)
T 2kfu_A 53 PGSALLVVKRGPNAG---------SRFLLDQAITSAGRHPD-SDIFLDDVTVSRRHAEFRLENNEFNVVDVGSLNGTYVN 122 (162)
T ss_dssp SSCCEEEEEESTTCS---------CEEETTSSEEEEESCSS-SSEESTTTSSSSCSEEEEEETTEEEEECCCCSSCEEET
T ss_pred CccEEEEEEeCCCCC---------eEEEECCCCEEECCCCC-CCEEECCCCcChhhEEEEEECCEEEEEECCCCCCeEEC
Confidence 356777776665544 77999999999999998 99999999999999999999999999999999999999
Q ss_pred CEEccCCceEECCCCCEEEECCceEE
Q 040067 137 EKRLRSGVVAVASPGSRITFGDTHLA 162 (195)
Q Consensus 137 g~~l~~~~~~~L~~gd~I~lG~~~~~ 162 (195)
|++|.+ ..|++||+|+||...+.
T Consensus 123 g~~i~~---~~L~~GD~I~iG~~~l~ 145 (162)
T 2kfu_A 123 REPVDS---AVLANGDEVQIGKFRLV 145 (162)
T ss_dssp TBCCSE---EECCSSCEEEETTEEEE
T ss_pred CEEcce---EECCCCCEEEECCEEEE
Confidence 999984 89999999999998773
No 10
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.87 E-value=5.1e-22 Score=149.73 Aligned_cols=80 Identities=23% Similarity=0.296 Sum_probs=75.5
Q ss_pred ceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCce
Q 040067 81 DAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTH 160 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~ 160 (195)
..|.|....++|||+++ |||+|+++.||++||+|.+.++.|+|+|++|+|||||||+++.. ++.|++||+|.||.+.
T Consensus 26 ~~~~l~~~~~~IGR~~~-~di~l~d~~VSr~Ha~i~~~~~~~~l~Dl~S~nGt~vNg~~i~~--~~~L~~Gd~i~iG~~~ 102 (128)
T 1r21_A 26 PHFPLSLSTCLFGRGIE-CDIRIQLPVVSKQHCKIEIHEQEAILHNFSSTNPTQVNGSVIDE--PVRLKHGDVITIIDRS 102 (128)
T ss_dssp EEEECCSSEEEEESSTT-SSEECCCTTSCTTCEEEEECSSCEEECCCCSSSCCEETTEECSS--CEECCTTEEEECSSCE
T ss_pred eEEEECCCCEEECCCCC-CCEEECCCCCChhHEEEEEECCEEEEEECCCCCCEEECCEECCC--cEEcCCCCEEEECCEE
Confidence 67999989999999998 99999999999999999999999999999999999999999985 6999999999999988
Q ss_pred EEE
Q 040067 161 LAM 163 (195)
Q Consensus 161 ~~~ 163 (195)
+.+
T Consensus 103 ~~~ 105 (128)
T 1r21_A 103 FRY 105 (128)
T ss_dssp EEE
T ss_pred EEE
Confidence 743
No 11
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.87 E-value=2e-21 Score=150.56 Aligned_cols=87 Identities=29% Similarity=0.463 Sum_probs=76.6
Q ss_pred ceEEEC-CCeEEEcCCCCCCCEEeCCCCcCccceEEEE--------ECCEEEEEeCCCCCceEECCEEccCCceEECCCC
Q 040067 81 DAFEIA-STEVTVGRLPERADMVIPVATVSGLHARIQK--------KGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPG 151 (195)
Q Consensus 81 ~~~~l~-~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~--------~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~g 151 (195)
..+.|. +..++|||.++ |||+|+++.||+.||+|.+ .++.|+|+|+ |+|||||||++|..+ ++.|++|
T Consensus 30 ~~~~l~~~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S~NGT~VNg~~i~~~-~~~L~~G 106 (151)
T 2jqj_A 30 QKVEITNRNVTTIGRSRS-CDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-SRNGTFINGNRLVKK-DYILKNG 106 (151)
T ss_dssp EEEEEECCSCEEEESSTT-SSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEETTEECCSS-CEEECSS
T ss_pred eEEEEcCCCeEEeCCCCC-CCEEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-CCCCeEECCEEcCCC-ceECCCC
Confidence 568887 48999999998 9999999999999999999 6788999999 999999999999987 8999999
Q ss_pred CEEEECCceEEEEEeeccC
Q 040067 152 SRITFGDTHLAMFRVSKID 170 (195)
Q Consensus 152 d~I~lG~~~~~~~~~~~~~ 170 (195)
|+|.||.+...+|++....
T Consensus 107 D~I~lG~~~~~~f~~~~~~ 125 (151)
T 2jqj_A 107 DRIVFGKSCSFLFKYASSS 125 (151)
T ss_dssp EEEEETTTEEEEEEECSSC
T ss_pred CEEEECCCcEEEEEEcCCC
Confidence 9999999633366665443
No 12
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.87 E-value=1.1e-21 Score=148.64 Aligned_cols=85 Identities=26% Similarity=0.380 Sum_probs=76.7
Q ss_pred ceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEEC---C--EEEEEeC-----CCCCceEECCEEccCCceEECCC
Q 040067 81 DAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKG---D--SLLVTDL-----DSTNGTFIDEKRLRSGVVAVASP 150 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~---~--~~~l~Dl-----~S~nGT~VNg~~l~~~~~~~L~~ 150 (195)
+.|.|.+..++|||.++ |||+|+++.||+.||+|.+.. + .|+|+|+ +|+|||||||+++.. +.|++
T Consensus 23 ~~~~l~~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~l~Dl~~~~~~S~NGT~vNg~~i~~---~~L~~ 98 (131)
T 3hx1_A 23 REVLLTETFYTIGRSPR-ADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMINGKKVQE---HIIQT 98 (131)
T ss_dssp EEEEECSSEEEEESSTT-SSEECCCSSSCTTCEEEEEC------CCEEEEESCTTSCCCSSCEEETTEEESE---EECCT
T ss_pred EEEEECCCCEEECCCCC-CCEEECCCCcChhheEEEEEccCCCceEEEEEECCCCCCCCCCceEECCEEeEe---EECCC
Confidence 67999999999999998 999999999999999999862 2 4999999 799999999999986 89999
Q ss_pred CCEEEECCceEEEEEeecc
Q 040067 151 GSRITFGDTHLAMFRVSKI 169 (195)
Q Consensus 151 gd~I~lG~~~~~~~~~~~~ 169 (195)
||+|+||...+.+|.+...
T Consensus 99 GD~I~iG~~~~~~~~~~~~ 117 (131)
T 3hx1_A 99 GDEIVMGPQVSVRYEYRRR 117 (131)
T ss_dssp TCEEECSTTCEEEEEEECC
T ss_pred CCEEEECCEEEEEEEEecC
Confidence 9999999999988876554
No 13
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.87 E-value=2.9e-23 Score=158.98 Aligned_cols=99 Identities=23% Similarity=0.335 Sum_probs=87.1
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECCC-eEEEcCCCCCCCEEeCCCCcCccceEEEEEC--CEEEEEeCCCCCceE
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAST-EVTVGRLPERADMVIPVATVSGLHARIQKKG--DSLLVTDLDSTNGTF 134 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~-~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~--~~~~l~Dl~S~nGT~ 134 (195)
..|.|++..++..+ ..|.|..+ .++|||+++.|||+|+++.|||+||+|.+++ +.|+|+|++|+||||
T Consensus 33 ~~~~L~v~~g~~~g---------~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~~~~~~l~Dl~S~NGT~ 103 (140)
T 2jpe_A 33 PGLHLDVVKGDKLI---------EKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKHLKRVFLIDLNSTHGTF 103 (140)
T ss_dssp SSCBEEEESSSSEE---------EEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSSSCCEEEECCSCSSCEE
T ss_pred cCEEEEEEcCCCcc---------eEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECCCCcEEEEECCCCCCeE
Confidence 46888887777655 67888875 5999999866999999999999999999997 899999999999999
Q ss_pred ECCEEccCCceEECCCCCEEEECCceEEEEEe
Q 040067 135 IDEKRLRSGVVAVASPGSRITFGDTHLAMFRV 166 (195)
Q Consensus 135 VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~~~ 166 (195)
|||++|.++.++.|++||+|+||...+ .|.+
T Consensus 104 vNg~~l~~~~~~~L~~gd~i~~G~~~~-~f~~ 134 (140)
T 2jpe_A 104 LGHIRLEPHKPQQIPIDSTVSFGASTR-AYTL 134 (140)
T ss_dssp SSSCEECSSSCCEECTTCCBBCSSCCC-CBCC
T ss_pred ECCEECCCCccEECCCCCEEEECCceE-EEEE
Confidence 999999988789999999999999877 4544
No 14
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.86 E-value=3.9e-21 Score=146.80 Aligned_cols=90 Identities=24% Similarity=0.321 Sum_probs=80.3
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEEC-CCeEEEcCCCCCCCEEeCCCC----cCccceEEEE-ECCEEEEEeCCCC
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIA-STEVTVGRLPERADMVIPVAT----VSGLHARIQK-KGDSLLVTDLDST 130 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~-~~~~~IGR~~~~~di~l~~~~----VSr~Ha~I~~-~~~~~~l~Dl~S~ 130 (195)
...|+|...+... ..+.|. +..++|||.++ |||+|+++. ||+.||+|.+ .++.|+|+|++|+
T Consensus 7 ~~~w~l~~~G~~~-----------~~~~l~~~~~~~IGR~~~-~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~ 74 (138)
T 2pie_A 7 GRSWCLRRVGMSA-----------GWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSL 74 (138)
T ss_dssp CEEEEEEETTCSS-----------CBEEECTTCCEEEESSSS-SSEECCCSSCTTSSCSSCEEEEECTTSCEEEEECSCS
T ss_pred CccEEEEEeCCCC-----------CEEEecCCCeEEECCCCC-CCEEeCCCCcCCCCChhHeEEEEcCCCcEEEEECCCC
Confidence 4579988775544 347776 67899999998 999999998 9999999999 5788999999999
Q ss_pred CceEECCEEccCCceEECCCCCEEEECC
Q 040067 131 NGTFIDEKRLRSGVVAVASPGSRITFGD 158 (195)
Q Consensus 131 nGT~VNg~~l~~~~~~~L~~gd~I~lG~ 158 (195)
|||||||++|.++.++.|++||+|.||.
T Consensus 75 NGT~vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 75 NGVWLNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp SCEEETTEECCTTCCEECCTTCEEEESC
T ss_pred CCeEECCEEcCCCCcEECCCCCEEEECC
Confidence 9999999999998899999999999998
No 15
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.86 E-value=4.6e-21 Score=148.21 Aligned_cols=99 Identities=21% Similarity=0.266 Sum_probs=83.3
Q ss_pred CCEE-EEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCC---------cCccceEEEEECC-----EE
Q 040067 58 ERWL-LQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVAT---------VSGLHARIQKKGD-----SL 122 (195)
Q Consensus 58 ~~~~-L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~---------VSr~Ha~I~~~~~-----~~ 122 (195)
..|. |....++. ..+.|....++|||.+. |||+|+++. |||+||+|.+.++ .|
T Consensus 28 ~~w~~L~~~~~~~-----------~~i~L~~~~~~IGR~~~-~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~~~~~~ 95 (149)
T 1gxc_A 28 APWARLWALQDGF-----------ANLECVNDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIA 95 (149)
T ss_dssp -CCEEEEECSTTC-----------CCEEECSSEEEEESSTT-CSEECCCGGGGGSSGGGGSCTTCEEEEEEECTTSSEEE
T ss_pred CeeEEEEEcCCCC-----------ceEEECCCCEEecCCCC-CCEEECCccccccccCCcCchhheEEEEECCCCceeEE
Confidence 4684 65555443 34888899999999997 999999984 9999999999887 89
Q ss_pred EEEeCCCCCceEECCEEccCCceEECCCCCEEEECCceEEEEEeecc
Q 040067 123 LVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKI 169 (195)
Q Consensus 123 ~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~~~~~~ 169 (195)
+|+|+ |+|||||||++|.++.++.|++||+|.||.....+|.+...
T Consensus 96 ~i~D~-StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 96 YIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp EEEEC-CSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred EEEEC-CCCCeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 99997 99999999999999889999999999999975545655544
No 16
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.85 E-value=2.5e-21 Score=150.83 Aligned_cols=78 Identities=26% Similarity=0.431 Sum_probs=74.1
Q ss_pred ceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCce
Q 040067 81 DAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTH 160 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~ 160 (195)
+.|.|....++|||.++ |||+|+++.||+.||+|.++++.|+|+|++|+|||||||++|.+ ..|++||+|+||.+.
T Consensus 78 ~~~~L~~~~~~IGR~~~-~dI~L~d~~VSr~HA~I~~~~~~~~l~DlgStNGT~VNG~~i~~---~~L~~GD~I~lG~~~ 153 (157)
T 3oun_A 78 RTYQLREGSNIIGRGQD-AQFRLPDTGVSRRHLEIRWDGQVALLADLNSTNGTTVNNAPVQE---WQLADGDVIRLGHSE 153 (157)
T ss_dssp CEEECCSEEEEEESSTT-CSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECSE---EECCTTCEEEETTEE
T ss_pred eEEEECCCcEEEEeCCC-CCEEeCCCCcChhHEEEEEECCEEEEEECCCCCCeEECCEECce---EECCCCCEEEECCEE
Confidence 67999999999999998 99999999999999999999999999999999999999999974 899999999999988
Q ss_pred EE
Q 040067 161 LA 162 (195)
Q Consensus 161 ~~ 162 (195)
+.
T Consensus 154 l~ 155 (157)
T 3oun_A 154 II 155 (157)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 17
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.85 E-value=1.6e-21 Score=144.41 Aligned_cols=90 Identities=26% Similarity=0.348 Sum_probs=78.6
Q ss_pred CEE-EEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCC-CcCccceEEEEE--CCEEEEEeCCCCCceE
Q 040067 59 RWL-LQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVA-TVSGLHARIQKK--GDSLLVTDLDSTNGTF 134 (195)
Q Consensus 59 ~~~-L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~-~VSr~Ha~I~~~--~~~~~l~Dl~S~nGT~ 134 (195)
.|. |++..++... ..+.|....++|||.++ |||+|++. .||++||+|.++ ++.|+|+| +|+||||
T Consensus 3 ~wg~L~~~~~~~~~---------~~~~l~~~~~~iGR~~~-~di~l~~~~~vSr~Ha~i~~~~~~~~~~l~D-~S~NGt~ 71 (116)
T 1lgp_A 3 PWGRLLRLGAEEGE---------PHVLLRKREWTIGRRRG-CDLSFPSNKLVSGDHCRIVVDEKSGQVTLED-TSTSGTV 71 (116)
T ss_dssp CCEEECCTTCCSSS---------CCEEECSSEEEEESSTT-SSEECTTCTTSCTTCEEEEECTTTCCEEEEE-CSSSCCC
T ss_pred CEEEEEEeCCCCCc---------cEEEECCCCEEECCCCC-CCEEeCCCCCCChhHeEEEEECCCCeEEEEE-CCcCCcE
Confidence 474 6556554433 56899999999999998 99999874 999999999997 68899999 9999999
Q ss_pred ECCEEccCCceEECCCCCEEEECCc
Q 040067 135 IDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 135 VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
|||++|.++.++.|++||+|.||..
T Consensus 72 vng~~l~~~~~~~L~~GD~i~~G~~ 96 (116)
T 1lgp_A 72 INKLKVVKKQTCPLQTGDVIYLVYR 96 (116)
T ss_dssp CCCCCCCCSSCCCCCTTCEEEEECC
T ss_pred ECCEEcCCCCcEECCCCCEEEEecc
Confidence 9999999888899999999999985
No 18
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.84 E-value=1e-20 Score=148.53 Aligned_cols=91 Identities=23% Similarity=0.260 Sum_probs=79.9
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECCC-----------eEEEcCCCCCCCEEeCCC-CcCccceEEEEE-CCEEEE
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAST-----------EVTVGRLPERADMVIPVA-TVSGLHARIQKK-GDSLLV 124 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~-----------~~~IGR~~~~~di~l~~~-~VSr~Ha~I~~~-~~~~~l 124 (195)
..|.|++..+...+ ..+.|... .++|||+++ |||+|+++ .||+.||+|.+. ++.|+|
T Consensus 32 ~~~~L~v~~G~~~g---------~~~~l~~~~v~~~~~~~~~~~~IGR~~~-~di~l~d~~~vSr~Ha~I~~~~~g~~~l 101 (164)
T 1g3g_A 32 IVCRVICTTGQIPI---------RDLSADISQVLKEKRSIKKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGEDGNLLL 101 (164)
T ss_dssp CCEEEECSSSSSCC---------EEECCCHHHHHHCSSSCCEEEEEESSSS-SSEECCCCTTTTSSCEEEEECSTTCEEE
T ss_pred ccEEEEEecCCCCC---------eEEEeccccccccccccCCcEEECCCCC-CCEEeCCcCCcChhHEEEEECCCCCEEE
Confidence 46778777766554 55666643 899999998 99999998 699999999995 889999
Q ss_pred EeCCCCCceEECCEEccCCceEECCCCCEEEECCc
Q 040067 125 TDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 125 ~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
+|+ |+|||||||++|..+.++.|++||+|.||..
T Consensus 102 ~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~ 135 (164)
T 1g3g_A 102 NDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVG 135 (164)
T ss_dssp EEC-CSSCEEETTEEECTTEEEECCTTCEEEESCS
T ss_pred EEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCC
Confidence 999 9999999999999988999999999999996
No 19
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.84 E-value=6.5e-21 Score=148.83 Aligned_cols=97 Identities=25% Similarity=0.247 Sum_probs=80.6
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECC-CeEEEcCCC--------------CCCCEEeCCCCcCccceEEEEECCE-
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIAS-TEVTVGRLP--------------ERADMVIPVATVSGLHARIQKKGDS- 121 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~-~~~~IGR~~--------------~~~di~l~~~~VSr~Ha~I~~~~~~- 121 (195)
..|.|++..+|..... .-..+.|.. ..++|||.+ ..|||+|+++.||++||.|.+.++.
T Consensus 30 ~~~~l~v~k~g~~~~~-----~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~~Di~l~~~~VSr~HA~I~~~~~~~ 104 (158)
T 3els_A 30 TMYELVIYRKNDKDKG-----PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRG 104 (158)
T ss_dssp CCEEEEEEEGGGGGGC-----CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCSSCEEEEEEEETT
T ss_pred CceEEEEEeCCccCcc-----cceEEEecCCCceEeccccccccccccccccccccCCEEcCCCCCCcccEEEEEEccCC
Confidence 5799999877763100 014577765 478999995 2399999999999999999998755
Q ss_pred ---EEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCc
Q 040067 122 ---LLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 122 ---~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
|+|+|++|+|||||||++|..+.++.|++||+|+||..
T Consensus 105 ~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s 145 (158)
T 3els_A 105 ILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEF 145 (158)
T ss_dssp EEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSC
T ss_pred eeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCC
Confidence 99999999999999999999988899999999999943
No 20
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.84 E-value=6.1e-21 Score=146.90 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=78.0
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEE-CCCeEEEcCCCCCCCEEeCCCC----cCccceEEEEE-CCEEEEEeCCCC
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEI-ASTEVTVGRLPERADMVIPVAT----VSGLHARIQKK-GDSLLVTDLDST 130 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l-~~~~~~IGR~~~~~di~l~~~~----VSr~Ha~I~~~-~~~~~l~Dl~S~ 130 (195)
...|+|+ ..+... ..+.+ .+..++|||.++ |||+|+++. ||++||+|.+. ++.|+|+|++|+
T Consensus 15 ~~~w~L~-~~G~~~----------~~~~l~~~~~~~IGR~~~-~di~l~~~~~~~~VSr~Ha~i~~~~~g~~~l~Dl~S~ 82 (145)
T 2csw_A 15 GRSWCLR-RVGMSA----------GWLLLEDGCEVTVGRGFG-VTYQLVSKICPLMISRNHCVLKQNPEGQWTIMDNKSL 82 (145)
T ss_dssp SEEEEEC-CTTCSC----------CBEECCTTCCEEEESSTT-SSEECCCSSCGGGSCTTCEEEEECTTSCEEEEBSSCS
T ss_pred CccEEEE-EeCCCC----------CeEEeCCCCcEEECCCCC-CCEEECCCCcCCCCChhHeEEEEcCCCeEEEEECCCC
Confidence 4679988 433333 34556 456899999998 999999998 99999999995 788999999999
Q ss_pred CceEECCEEccCCceEECCCCCEEEECC
Q 040067 131 NGTFIDEKRLRSGVVAVASPGSRITFGD 158 (195)
Q Consensus 131 nGT~VNg~~l~~~~~~~L~~gd~I~lG~ 158 (195)
|||||||++|.+++++.|++||+|+||.
T Consensus 83 NGT~vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 83 NGVWLNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp SCEEESSCBCCBTCCEECCSSCCEEESC
T ss_pred CCeEECCEECCCCccEECCCCCEEEECC
Confidence 9999999999998899999999999998
No 21
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.84 E-value=2.2e-20 Score=145.74 Aligned_cols=86 Identities=22% Similarity=0.329 Sum_probs=77.4
Q ss_pred ceEEECCCe--EEEcCCCCCCCEEeCCCCcCccceEEEEEC---------------CEEEEEeCCCCCceEECCEEccCC
Q 040067 81 DAFEIASTE--VTVGRLPERADMVIPVATVSGLHARIQKKG---------------DSLLVTDLDSTNGTFIDEKRLRSG 143 (195)
Q Consensus 81 ~~~~l~~~~--~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~---------------~~~~l~Dl~S~nGT~VNg~~l~~~ 143 (195)
+.+.|.... ++|||.++ |||+|+++.||++||+|.+.+ +.|+|+|+ |+|||||||++|.++
T Consensus 18 ~~i~L~~~~~~~~IGR~~~-~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~ 95 (158)
T 1dmz_A 18 ESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQG 95 (158)
T ss_dssp CCEEETTSCSCEEEESSTT-SSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTCCEETTEECCSS
T ss_pred eEEEEcCCCceEEECCCCC-CCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCCeEECCEEcCCC
Confidence 568888766 99999998 999999999999999999977 78999999 999999999999999
Q ss_pred ceEECCCCCEEEE-----CCceEEEEEeecc
Q 040067 144 VVAVASPGSRITF-----GDTHLAMFRVSKI 169 (195)
Q Consensus 144 ~~~~L~~gd~I~l-----G~~~~~~~~~~~~ 169 (195)
.++.|++||+|+| |...+ .|++...
T Consensus 96 ~~~~L~~GD~I~l~~d~~G~~~l-~f~~~~~ 125 (158)
T 1dmz_A 96 TKFLLQDGDEIKIIWDKNNKFVI-GFKVEIN 125 (158)
T ss_dssp EEEECCSSCCEESCCCTTTTCCC-CEEEECS
T ss_pred ceEEcCCCCEEEEeecCCCCEEE-EEEEEeC
Confidence 8999999999999 99887 5555443
No 22
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.83 E-value=2.3e-20 Score=150.70 Aligned_cols=97 Identities=25% Similarity=0.250 Sum_probs=79.3
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEEC-CCeEEEcCCCC--------------CCCEEeCCCCcCccceEEEEECC--
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIA-STEVTVGRLPE--------------RADMVIPVATVSGLHARIQKKGD-- 120 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~-~~~~~IGR~~~--------------~~di~l~~~~VSr~Ha~I~~~~~-- 120 (195)
..|.|++..+|..... .-..+.|. +..++|||+++ .|||+|+++.||++||.|.+..+
T Consensus 77 ~~~~L~v~k~g~k~~~-----~i~~~~L~~~s~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~~ 151 (205)
T 3elv_A 77 TMYELVIYRKNDKDKG-----PWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVRG 151 (205)
T ss_dssp CCEEEEEEEGGGCTTC-----CSEEEECSSCSEEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEETT
T ss_pred CceEEEEEeCCCcccc-----cceEEEecCCCceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCCC
Confidence 4588888876652100 01467785 47899999952 39999999999999999988652
Q ss_pred --EEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCc
Q 040067 121 --SLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 121 --~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
.|+|+|++|+|||||||++|.++.++.|++||+|+||..
T Consensus 152 ~~~~~l~DLgStNGTfVNG~rI~~~~~~~L~~GD~I~fG~s 192 (205)
T 3elv_A 152 ILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEF 192 (205)
T ss_dssp EEEEEEEECSCSSCCEETTEECCBTSCEECCTTCEEESSSS
T ss_pred ceeEEEEeCCCCCCCeECCEECCCCceeECCCCCEEEECCC
Confidence 499999999999999999999988899999999999954
No 23
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.83 E-value=1.2e-20 Score=150.38 Aligned_cols=85 Identities=22% Similarity=0.343 Sum_probs=76.4
Q ss_pred ceEEECCCe--EEEcCCCCCCCEEeCCCCcCccceEEEEEC---------------CEEEEEeCCCCCceEECCEEccCC
Q 040067 81 DAFEIASTE--VTVGRLPERADMVIPVATVSGLHARIQKKG---------------DSLLVTDLDSTNGTFIDEKRLRSG 143 (195)
Q Consensus 81 ~~~~l~~~~--~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~---------------~~~~l~Dl~S~nGT~VNg~~l~~~ 143 (195)
+.+.|..+. ++|||+++ |||+|+++.||+.||+|.+.+ +.|+|+|+ |+|||||||++|..+
T Consensus 42 ~~i~L~~~~~~~~IGR~~~-~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNGT~VNg~ri~~~ 119 (182)
T 1qu5_A 42 ESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNVSYLNNNRMIQG 119 (182)
T ss_dssp SCCCBTTCCSSEEESSSTT-SSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSCCEETTEECCSS
T ss_pred eEEEEcCCCceEEECCCCC-CCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCCeEECCEEcCCC
Confidence 456777665 99999998 999999999999999999987 89999999 999999999999999
Q ss_pred ceEECCCCCEEEE-----CCceEEEEEeec
Q 040067 144 VVAVASPGSRITF-----GDTHLAMFRVSK 168 (195)
Q Consensus 144 ~~~~L~~gd~I~l-----G~~~~~~~~~~~ 168 (195)
.++.|++||+|.| |...+ .|++..
T Consensus 120 ~~~~L~~GD~I~l~~d~~G~~~l-~f~~~~ 148 (182)
T 1qu5_A 120 TKFLLQDGDEIKIIWDKNNKFVI-GFKVEI 148 (182)
T ss_dssp EEEECCTTBCCEEEEEGGGTEEE-ECCEEE
T ss_pred cceEcCCCCEEEEEEcCCCCEEE-EEEEEe
Confidence 8999999999999 99887 555543
No 24
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.82 E-value=7.2e-20 Score=136.54 Aligned_cols=78 Identities=17% Similarity=0.342 Sum_probs=71.8
Q ss_pred ceEEECCCeEEEcCC--CCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECC
Q 040067 81 DAFEIASTEVTVGRL--PERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGD 158 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~--~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~ 158 (195)
..|.|....++|||. ++ |||+|+++.||++||.|.+.++.|+|+|++|+|||||||++|.. ++.|++||+|.||.
T Consensus 29 ~~~~L~~~~~~IGr~r~~~-~di~l~~~~vSr~Ha~i~~~~~~~~l~dl~S~ngt~vNg~~i~~--~~~L~~GD~I~iG~ 105 (120)
T 1wln_A 29 KLYRLQLSVTEVGTEKFDD-NSIQLFGPGIQPHHCDLTNMDGVVTVTPRSMDAETYVDGQRISE--TTMLQSGMRLQFGT 105 (120)
T ss_dssp CEEECCSEEEECSSSCCST-TCCCCCCTTCCSSCEEEEESSSCEEEEESCSSSCEEETSCBCSS--CEEECTTCEEEETT
T ss_pred EEEEECCCCEEECCCCCCC-CcEEECCCCCchhheEEEEcCCEEEEEECCCCCCEEECCEEcCC--CEECCCCCEEEECC
Confidence 679999999999974 55 99999999999999999999999999999999999999999985 68999999999999
Q ss_pred ceE
Q 040067 159 THL 161 (195)
Q Consensus 159 ~~~ 161 (195)
..+
T Consensus 106 ~~~ 108 (120)
T 1wln_A 106 SHV 108 (120)
T ss_dssp TEE
T ss_pred ceE
Confidence 543
No 25
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.81 E-value=2.6e-19 Score=134.80 Aligned_cols=72 Identities=29% Similarity=0.415 Sum_probs=67.1
Q ss_pred CCeEEEcCCCCCCCEEeCCC-CcCccceEEEE-ECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCce
Q 040067 87 STEVTVGRLPERADMVIPVA-TVSGLHARIQK-KGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTH 160 (195)
Q Consensus 87 ~~~~~IGR~~~~~di~l~~~-~VSr~Ha~I~~-~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~ 160 (195)
+..++|||+++ |||+|+++ .||+.||+|.+ .++.|+|+|+ |+|||||||+++.++.++.|++||+|.||...
T Consensus 35 ~~~~~IGR~~~-~di~l~~~~~vSr~Ha~i~~~~~g~~~l~Dl-S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 35 KKVWTFGRNPA-CDYHLGNISRLSNKHFQILLGEDGNLLLNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CEEEEEESSTT-SSEECCSCTTSCSSCEEEEECTTSCEEEEEC-CSSCCEETTEECCTTCCEECCTTCEEEECTTS
T ss_pred CCCEEECCCCC-CCEEeCCCCCCChhHeEEEECCCCcEEEEEC-CcCCeEECCEEcCCCCeEEcCCCCEEEECCCc
Confidence 34899999998 99999997 69999999999 4789999999 99999999999999889999999999999974
No 26
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.79 E-value=6.2e-19 Score=154.82 Aligned_cols=79 Identities=29% Similarity=0.540 Sum_probs=74.5
Q ss_pred ceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCce
Q 040067 81 DAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTH 160 (195)
Q Consensus 81 ~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~ 160 (195)
..|.|.+..++|||.++ |||+|+++.||++||.|.+.++.|+|+|++|+|||||||+++.. ++.|++||+|+||.+.
T Consensus 299 ~~~~l~~~~~~iGR~~~-~di~l~~~~vSr~Ha~i~~~~~~~~l~Dl~S~nGt~vng~~i~~--~~~L~~gd~i~~G~~~ 375 (388)
T 2ff4_A 299 RGYPLQAAATRIGRLHD-NDIVLDSANVSRHHAVIVDTGTNYVINDLRSSNGVHVQHERIRS--AVTLNDGDHIRICDHE 375 (388)
T ss_dssp CEEECCSSEEEEESSTT-SSEECCCTTSCTTCEEEEECSSCEEEEECSCSSCCEETTEECSS--EEEECTTCEEEETTEE
T ss_pred cEEEECCCCEEEecCCC-CeEEECCCccChhHeEEEEECCEEEEEECCCCCCeEECCEECCC--ceECCCCCEEEECCEE
Confidence 56999999999999998 99999999999999999999999999999999999999999963 7999999999999987
Q ss_pred EE
Q 040067 161 LA 162 (195)
Q Consensus 161 ~~ 162 (195)
+.
T Consensus 376 ~~ 377 (388)
T 2ff4_A 376 FT 377 (388)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 27
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.77 E-value=2.4e-18 Score=133.72 Aligned_cols=98 Identities=17% Similarity=0.257 Sum_probs=78.4
Q ss_pred CEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCC--CCCEEeCCCCcCccceEEEEECC----EEEEEeCCCCCc
Q 040067 59 RWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPE--RADMVIPVATVSGLHARIQKKGD----SLLVTDLDSTNG 132 (195)
Q Consensus 59 ~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~--~~di~l~~~~VSr~Ha~I~~~~~----~~~l~Dl~S~nG 132 (195)
..+|+..+...... .--.|.|..+.++|||... .|||+|+++.||++||.|.++++ .+++.|++|+||
T Consensus 38 ~PhLvnLn~Dp~ls------~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~~~~~~~~~d~~S~ng 111 (154)
T 4ejq_A 38 TPHLVNLNEDPLMS------ECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPCEGAD 111 (154)
T ss_dssp SCEEEECCCCTTCS------SEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTTSSSCEEEEEECTTCC
T ss_pred CceEEEecCCcccC------ceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCCCceeEEEEecCCCCc
Confidence 35666655543220 1134888899999999762 39999999999999999999874 588999999999
Q ss_pred eEECCEEccCCceEECCCCCEEEECCceEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITFGDTHLAMF 164 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~ 164 (195)
|||||++|.. ++.|++||+|.||...++.|
T Consensus 112 t~VNG~~i~~--~~~L~~GD~I~~G~~~~Frf 141 (154)
T 4ejq_A 112 TYVNGKKVTE--PSILRSGNRIIMGKSHVFRF 141 (154)
T ss_dssp EEETTEECCS--CEECCTTCEEEETTTEEEEE
T ss_pred eEECCEEcCC--ceECCCCCEEEECCcEEEEE
Confidence 9999999975 68999999999999876333
No 28
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.76 E-value=4.6e-18 Score=127.67 Aligned_cols=96 Identities=15% Similarity=0.235 Sum_probs=77.1
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEE-CCEEEEEeCCCCCceEEC
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATVSGLHARIQKK-GDSLLVTDLDSTNGTFID 136 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~-~~~~~l~Dl~S~nGT~VN 136 (195)
...+|+....+.... .--.|.|.. .++|||.++ |||+|+++.||++||.|.+. ++.|+|+|++ +||||||
T Consensus 25 ~~PhLvnLn~Dp~~s------~~l~y~L~~-~t~IGR~~~-~DI~L~~~~Vs~~Ha~I~~~~~g~~~l~dl~-~ngt~VN 95 (124)
T 3fm8_A 25 DKCFLVNLNADPALN------ELLVYYLKE-HTLIGSANS-QDIQLCGMGILPEHCIIDITSEGQVMLTPQK-NTRTFVN 95 (124)
T ss_dssp --CEEEETTCCTTSS------CCCEEECCS-EEEEESSTT-CSEECCSTTCCSSCEEEEECTTSCEEEEECT-TCCEEET
T ss_pred CccEEEEeCCCCccC------ceEEEECCC-CeEECCCCC-CCEEECCCCeecceEEEEECCCCeEEEEECC-CCCEEEC
Confidence 455777776644321 113477765 589999998 99999999999999999994 7889999995 8999999
Q ss_pred CEEccCCceEECCCCCEEEECCceEEEE
Q 040067 137 EKRLRSGVVAVASPGSRITFGDTHLAMF 164 (195)
Q Consensus 137 g~~l~~~~~~~L~~gd~I~lG~~~~~~~ 164 (195)
|++|.. ++.|++||+|.||...+..|
T Consensus 96 G~~V~~--~~~L~~GD~I~lG~~~~FrF 121 (124)
T 3fm8_A 96 GSSVSS--PIQLHHGDRILWGNNHFFRL 121 (124)
T ss_dssp TEECCS--CEEECTTCEEEETTTEEEEE
T ss_pred CEEcCC--cEECCCCCEEEECCCeEEEE
Confidence 999985 69999999999999876333
No 29
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.70 E-value=1e-16 Score=136.38 Aligned_cols=101 Identities=20% Similarity=0.233 Sum_probs=80.4
Q ss_pred EEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCCC--CCEEeCCCCcCccceEEEEEC-----------CEEEEEe
Q 040067 60 WLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPER--ADMVIPVATVSGLHARIQKKG-----------DSLLVTD 126 (195)
Q Consensus 60 ~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~--~di~l~~~~VSr~Ha~I~~~~-----------~~~~l~D 126 (195)
|.|...++-..+ +++.|..+.++|||.... ++|.++|++|||+||.|.+.. ..++|+|
T Consensus 2 WiL~~~~d~~~G---------kr~~L~pg~YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~D 72 (325)
T 3huf_A 2 WIIEAEGDILKG---------KSRILFPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKD 72 (325)
T ss_dssp EEEEESTTTTTT---------CCEEECSEEEEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEE
T ss_pred cEEeccCccCCC---------eEEEecCCeEEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEE
Confidence 889885432233 678888888999999651 236999999999999998862 3699999
Q ss_pred CCCCCceEECCEEccCCceEECCCCCEEEECCceEEEEEeeccC
Q 040067 127 LDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKID 170 (195)
Q Consensus 127 l~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~~~~~~~ 170 (195)
++|+|||||||+++.........+||.|+||.... .|++....
T Consensus 73 LgSknGTfVNGerI~~~~~~L~~dgd~I~fG~~~~-~fRl~W~P 115 (325)
T 3huf_A 73 LDTKFGTKVNEKVVGQNGDSYKEKDLKIQLGKCPF-TINAYWRS 115 (325)
T ss_dssp CSCSSCEEETTEECCTTCEEECSSEEEEEETTCSS-CEEEEECC
T ss_pred CCCCCCEEECCEECCCceeeecCCCCEEEecCCcc-eEEEEEee
Confidence 99999999999999876544456899999999876 66766554
No 30
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.69 E-value=4.5e-16 Score=116.01 Aligned_cols=94 Identities=15% Similarity=0.261 Sum_probs=84.3
Q ss_pred CCCEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCC-CCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCceEE
Q 040067 57 AERWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLP-ERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNGTFI 135 (195)
Q Consensus 57 ~~~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~-~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nGT~V 135 (195)
...|.|.+..+-..+ ..++|..+.++||+++ + |||+|.|+.||+.||+|...+++|+|+ +|.||||+
T Consensus 2 ~~~~klrvlsG~~~G---------~~l~L~~~~~~IGs~~~~-~DLvL~D~~Vs~~H~~L~~~~~g~~L~--~s~ngt~v 69 (123)
T 4a0e_A 2 GGSWVCRFYQGKHRG---------VEVELPHGRCVFGSDPLQ-SDIVLSDSEIAPVHLVLMVDEEGIRLT--DSAEPLLQ 69 (123)
T ss_dssp -CCEEEEECSGGGTT---------CEEEECSEEEEEESCTTT-CSEECCCTTSCSSCEEEEEETTEEEEE--EESSCCEE
T ss_pred CceEEEEEecCCCCC---------cEEEcCCCcEEECCCCCC-CCEEEeCCCccceeEEEEECCCeEEEE--eccCCEEE
Confidence 467999888776665 7899999999999998 8 999999999999999999999999998 68999999
Q ss_pred CCEEccCCceEECCCCCEEEECCceEEEE
Q 040067 136 DEKRLRSGVVAVASPGSRITFGDTHLAMF 164 (195)
Q Consensus 136 Ng~~l~~~~~~~L~~gd~I~lG~~~~~~~ 164 (195)
||+++..+ ..|..|+.|.+|...+.+.
T Consensus 70 dG~~v~~~--~~L~~g~~l~lG~~~l~~~ 96 (123)
T 4a0e_A 70 EGLPVPLG--TLLRAGSCLEVGFLLWTFV 96 (123)
T ss_dssp TTEECCTT--CBCCTTSCEEETTEEEEEE
T ss_pred CCEEcccc--cccCCCCEEEEccEEEEEE
Confidence 99999885 4999999999999988443
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.55 E-value=1.8e-14 Score=103.20 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=62.8
Q ss_pred CCCeEEEcCCCCCCCEEeCCCCcCccceEEEEECCEEEEEeCCCCCc-eEECCEEccCCceEECCCCCE------EEECC
Q 040067 86 ASTEVTVGRLPERADMVIPVATVSGLHARIQKKGDSLLVTDLDSTNG-TFIDEKRLRSGVVAVASPGSR------ITFGD 158 (195)
Q Consensus 86 ~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~~~~~l~Dl~S~nG-T~VNg~~l~~~~~~~L~~gd~------I~lG~ 158 (195)
....++|||+++ |+++|++++||+.||.|...+++.|+.. |+|| +||||+++ . +..|..||. ++||.
T Consensus 19 ~~~~~rIGR~~~-~~l~LddpsVs~~HAti~~~~~G~~~l~--S~nGtVFVNGqrv-~--~~~I~~gDtI~g~v~lrFGn 92 (102)
T 3uv0_A 19 ADTIYRIGRQKG-LEISIADESMELAHATACILRRGVVRLA--ALVGKIFVNDQEE-T--VVDIGMENAVAGKVKLRFGN 92 (102)
T ss_dssp TTCCEEEESSTT-STEECCCTTSCTTCEEEEEEETTEEEEE--ESSSCEEETTEEE-S--EEEECGGGCBTTEEEEEETT
T ss_pred cCcEEEEcCCCC-CcEEECCcccccceEEEEecCCceEEEE--eccCcEEECCEEe-e--eEEccCCcccccEEEEEecC
Confidence 356899999999 9999999999999999988765555533 9999 59999999 3 699999999 89999
Q ss_pred ceEEEEEe
Q 040067 159 THLAMFRV 166 (195)
Q Consensus 159 ~~~~~~~~ 166 (195)
..- .+++
T Consensus 93 vea-~l~~ 99 (102)
T 3uv0_A 93 VEA-RLEF 99 (102)
T ss_dssp EEE-EEEE
T ss_pred EEE-EEEe
Confidence 877 4444
No 32
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.49 E-value=1.1e-13 Score=121.52 Aligned_cols=99 Identities=21% Similarity=0.284 Sum_probs=81.6
Q ss_pred CCEE-EEEccCCCcceecccCCCCceEEECCCeEEEcCCCCCCCEEeCCCCc---------CccceEEEEEC--C---EE
Q 040067 58 ERWL-LQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPERADMVIPVATV---------SGLHARIQKKG--D---SL 122 (195)
Q Consensus 58 ~~~~-L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~~~di~l~~~~V---------Sr~Ha~I~~~~--~---~~ 122 (195)
..|. |.+...+. ..+.|..+.++|||.++ ||++++++.| |++||.|.+.. + .|
T Consensus 8 ~~~g~l~~~~~~~-----------~~~~l~~~~~~iGR~~~-~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~~~~~~ 75 (419)
T 3i6u_A 8 APWARLWALQDGF-----------ANLECVNDNYWFGRDKS-CEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPKNSYIA 75 (419)
T ss_dssp CCSEEEEECSSSS-----------CCEEECSSEEEEESSTT-SSEETTCTTGGGCSGGGGSCTTCEEEECCEETTTEECC
T ss_pred CCceEeeecCCCC-----------CceEecCCCEEecCCCc-cCEEECCcccccccccccccccceEEEEEcCCCCceEE
Confidence 4686 55566654 34889999999999988 9999999865 99999997642 1 39
Q ss_pred EEEeCCCCCceEECCEEccCCceEECCCCCEEEECCceEEEEEeecc
Q 040067 123 LVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDTHLAMFRVSKI 169 (195)
Q Consensus 123 ~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~~~~~~ 169 (195)
+|+| .|+|||||||+++..+....|.+||.|.||.+...+|.....
T Consensus 76 ~i~D-~S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~~~~~~~~~~~ 121 (419)
T 3i6u_A 76 YIED-HSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 121 (419)
T ss_dssp EEEE-CCSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEES
T ss_pred EEEE-CCcCCceECcccccCCCcccCCCCCEeeeeccccceEEEecc
Confidence 9999 699999999999999989999999999999887656655433
No 33
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.42 E-value=1.6e-12 Score=103.50 Aligned_cols=97 Identities=18% Similarity=0.254 Sum_probs=76.5
Q ss_pred CEEEEEccCCCcceecccCCCCceEEECCCeEEEcCCCC--CCCEEeCCCCcCccceEEEEEC-----CEEEEEeCCCCC
Q 040067 59 RWLLQPVGDGDTSHIGFKVPMPDAFEIASTEVTVGRLPE--RADMVIPVATVSGLHARIQKKG-----DSLLVTDLDSTN 131 (195)
Q Consensus 59 ~~~L~~~~~g~~~~i~~~~~~~~~~~l~~~~~~IGR~~~--~~di~l~~~~VSr~Ha~I~~~~-----~~~~l~Dl~S~n 131 (195)
..+|+..+.+.... .--.|.|..+..+|||... .|||+|.++.|++.||.|..+. +.++|.+. +.+
T Consensus 68 ~PhLvnLn~Dp~ls------~~l~y~L~~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~~~~~vtl~p~-~~a 140 (184)
T 4egx_A 68 TPHLVNLNEDPLMS------ECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGGSEAVVTLEPC-EGA 140 (184)
T ss_dssp SCEEEECCCCTTCS------SCSEEECCSEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSSCSCEEEEEEC-TTC
T ss_pred CceEEeccCCcccC------ceEEEEECCCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCCceEEEEEeeC-CCC
Confidence 45677665543321 1135888889999999643 3899999999999999999864 45888887 578
Q ss_pred ceEECCEEccCCceEECCCCCEEEECCceEEEE
Q 040067 132 GTFIDEKRLRSGVVAVASPGSRITFGDTHLAMF 164 (195)
Q Consensus 132 GT~VNg~~l~~~~~~~L~~gd~I~lG~~~~~~~ 164 (195)
.|||||.+|.. ++.|++||+|.||...++.|
T Consensus 141 ~t~VNG~~I~~--~~~L~~GDrI~lG~~h~Frf 171 (184)
T 4egx_A 141 DTYVNGKKVTE--PSILRSGNRIIMGKSHVFRF 171 (184)
T ss_dssp CEEETTEECCS--CEECCTTCEEEETTTEEEEE
T ss_pred eEEEcCEEccc--cEEcCCCCEEEECCCCEEEE
Confidence 89999999986 79999999999999986334
No 34
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.42 E-value=2.9e-12 Score=92.75 Aligned_cols=91 Identities=16% Similarity=0.210 Sum_probs=74.6
Q ss_pred EEEEEccCCCcceecccCCCCceEEECCC-eEEEcCCCCCCCEEeCCCCcCccceEEEEEC--CEEEEEeCCCCCceEEC
Q 040067 60 WLLQPVGDGDTSHIGFKVPMPDAFEIAST-EVTVGRLPERADMVIPVATVSGLHARIQKKG--DSLLVTDLDSTNGTFID 136 (195)
Q Consensus 60 ~~L~~~~~g~~~~i~~~~~~~~~~~l~~~-~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~--~~~~l~Dl~S~nGT~VN 136 (195)
.+|.+..++. ..+.|..+ .++|||++. +.| .|..+||+|++|..+. +.+.|+++| .|+++||
T Consensus 5 c~L~~~~~~~-----------~~I~L~~g~~v~iGR~p~-t~I--~DkrcSR~h~~L~~~~~~g~v~vk~lg-~Np~~vn 69 (102)
T 3kt9_A 5 CWLVRQDSRH-----------QRIRLPHLEAVVIGRGPE-TKI--TDKKCSRQQVQLKAECNKGYVKVKQVG-VNPTSID 69 (102)
T ss_dssp EEEEETTSTT-----------CEEECCBTCEEEECSSTT-TCC--CCTTSCSSCEEEEEETTTTEEEEEECS-SSCCEET
T ss_pred EEEEecCCCC-----------CcEEcCCCCcEEeccCCc-ccc--ccCcccCcceEEEEecCCCEEEEEECc-CCCCeEC
Confidence 5677776653 34666554 467899997 655 6999999999999884 678999995 9999999
Q ss_pred CEEccCCceEECCCCCEEEECCceEEEEEe
Q 040067 137 EKRLRSGVVAVASPGSRITFGDTHLAMFRV 166 (195)
Q Consensus 137 g~~l~~~~~~~L~~gd~I~lG~~~~~~~~~ 166 (195)
|+++..+..+.|++||+|.|-...+ .|++
T Consensus 70 g~~l~k~~~~~L~~GD~l~Ll~~~~-~~~v 98 (102)
T 3kt9_A 70 SVVIGKDQEVKLQPGQVLHMVNELY-PYIV 98 (102)
T ss_dssp TEECCBTCEEEECTTCCEEEETTEE-EEEE
T ss_pred CEEcCCCCeEEeCCCCEEEEccCCc-eEEE
Confidence 9999999999999999999988777 5554
No 35
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.32 E-value=9.2e-12 Score=94.49 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=74.0
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEE--CCCeEEEcCCCCCCCEEeCCCCcCccceEEEEEC--CEEEEEeCCCCCce
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEI--ASTEVTVGRLPERADMVIPVATVSGLHARIQKKG--DSLLVTDLDSTNGT 133 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l--~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~--~~~~l~Dl~S~nGT 133 (195)
...+|++..++. ..+.| ..+.++|||.+. ..|.|..+||+|++|..+- +.+.|.++| .|++
T Consensus 8 ~~c~L~p~d~~~-----------~~I~Lp~~~g~vvIGRgPe---t~ItDkRcSR~qv~L~ad~~~g~V~Vk~lG-~NP~ 72 (143)
T 1yj5_C 8 GRLWLQSPTGGP-----------PPIFLPSDGQALVLGRGPL---TQVTDRKCSRNQVELIADPESRTVAVKQLG-VNPS 72 (143)
T ss_dssp EEEEEECCTTSC-----------CCEECCTTTCEEEECSBTT---TTBCCSSSCSSCEEEEEETTTTEEEEEECS-SSCC
T ss_pred CeEEEEecCCCC-----------CcEEeccCCCCEEEcCCCc---cccccccccceeEEEEEecCCCeEEEEEcc-cCCc
Confidence 345677777653 34777 478999999986 4578999999999998764 788899995 8999
Q ss_pred EECCEEccCCceEECCCCCEEEE--CCceEEE
Q 040067 134 FIDEKRLRSGVVAVASPGSRITF--GDTHLAM 163 (195)
Q Consensus 134 ~VNg~~l~~~~~~~L~~gd~I~l--G~~~~~~ 163 (195)
+|||..|..+..+.|++||+|.| |...+.+
T Consensus 73 ~vng~~L~k~~~~~L~~GD~LeLl~g~y~f~V 104 (143)
T 1yj5_C 73 TVGVHELKPGLSGSLSLGDVLYLVNGLYPLTL 104 (143)
T ss_dssp EETTEECCTTCEEEECTTCEEESSSSCSEEEE
T ss_pred EECCEEecCCCEEEecCCCEEEEecCCceEEE
Confidence 99999999999999999999996 5555533
No 36
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.31 E-value=1.4e-11 Score=90.16 Aligned_cols=88 Identities=14% Similarity=0.182 Sum_probs=71.0
Q ss_pred CEEEEEccCCCcceecccCCCCceEEE--CCCeEEEcCCCCCCCEEeCCCCcCccceEEEEEC--CEEEEEeCCCCCceE
Q 040067 59 RWLLQPVGDGDTSHIGFKVPMPDAFEI--ASTEVTVGRLPERADMVIPVATVSGLHARIQKKG--DSLLVTDLDSTNGTF 134 (195)
Q Consensus 59 ~~~L~~~~~g~~~~i~~~~~~~~~~~l--~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~--~~~~l~Dl~S~nGT~ 134 (195)
..+|++..++. ..+.| ..+.++|||.+. . .|.|..+||+|++|..+- +.+.|.++| .|+++
T Consensus 9 ~c~L~~~~~~~-----------~~I~Lp~~~g~~viGR~p~-t--~I~DkrcSR~hv~L~ad~~~~~v~vk~lG-~Np~~ 73 (110)
T 2brf_A 9 RLWLESPPGEA-----------PPIFLPSDGQALVLGRGPL-T--QVTDRKCSRTQVELVADPETRTVAVKQLG-VNPST 73 (110)
T ss_dssp EEEEECSTTSS-----------CCEECCSTTCCEEECSBTT-T--TBCCTTSCSSCEEEEEETTTTEEEEEECS-SSCCE
T ss_pred EEEEEeCCCCC-----------CcEEeccCCCCEEEcCCCC-c--ccccccceeeeEEEEEecCCCEEEEEEcc-cCCcE
Confidence 34577776653 34777 468999999986 3 467999999999998754 789999995 99999
Q ss_pred ECCEEccCCceEECCCCCEEEECCceE
Q 040067 135 IDEKRLRSGVVAVASPGSRITFGDTHL 161 (195)
Q Consensus 135 VNg~~l~~~~~~~L~~gd~I~lG~~~~ 161 (195)
+||.++.+++.+.|++||+|.|=...+
T Consensus 74 vng~~l~k~~~~~L~~GD~leLl~g~y 100 (110)
T 2brf_A 74 TGTQELKPGLEGSLGVGDTLYLVNGLH 100 (110)
T ss_dssp EC-CBCCTTCEEEEETTCEEEEETTEE
T ss_pred ECCEEcCCCCEEEecCCCEEEEccCCe
Confidence 999999999999999999999844433
No 37
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=99.14 E-value=4.7e-11 Score=98.59 Aligned_cols=74 Identities=22% Similarity=0.267 Sum_probs=62.3
Q ss_pred EEECCCeEEEcCCCCCCCEEeCCCCcCccceEEEEE--C--CEEEEEeCCCCCce-EECCEEccCCceEECC-CCCEEEE
Q 040067 83 FEIASTEVTVGRLPERADMVIPVATVSGLHARIQKK--G--DSLLVTDLDSTNGT-FIDEKRLRSGVVAVAS-PGSRITF 156 (195)
Q Consensus 83 ~~l~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~--~--~~~~l~Dl~S~nGT-~VNg~~l~~~~~~~L~-~gd~I~l 156 (195)
|.+....++|||++. |||+|++. + ||.+... . +.|+|+|++|+||| ||||+++.. ...|+ .||.|.|
T Consensus 87 y~~~~~~itIG~~~~-~dI~l~~~-~---~~~~~~~~~~~~~~~~l~~l~s~ngtvyvNg~~i~~--~~~L~~~GD~I~i 159 (238)
T 1wv3_A 87 YPSIQDTMTIGPNAY-DDMVIQSL-M---NAIIIKDFQSIQESQYVRIVHDKNTDVYINYELQEQ--LTNKAYIGDHIYV 159 (238)
T ss_dssp CCSSCSEEEEESSTT-SSEECTTC-S---SCEEEECGGGHHHHCEEEEECCTTCCEEETTEECCS--SEEEEETTCEEEE
T ss_pred EecCCceEEEeCCCC-CeEEeCCC-e---eEEEEecccCcCCcEEEEEccCCCCCEEECCEEecc--ceeccCCcCEEEE
Confidence 334455999999988 99999988 3 6877666 2 58999999999996 999999987 47899 9999999
Q ss_pred CCceEEE
Q 040067 157 GDTHLAM 163 (195)
Q Consensus 157 G~~~~~~ 163 (195)
|+..+.+
T Consensus 160 g~~~~~~ 166 (238)
T 1wv3_A 160 EGIWLEV 166 (238)
T ss_dssp TTEEEEE
T ss_pred CCEEEEE
Confidence 9998854
No 38
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.14 E-value=5.5e-11 Score=88.04 Aligned_cols=89 Identities=19% Similarity=0.249 Sum_probs=72.1
Q ss_pred CCEEEEEccCCCcceecccCCCCceEEE--CCCeEEEcCCCCCCCEEeCCCCcCccceEEEEEC--CEEEEEeCCCCCce
Q 040067 58 ERWLLQPVGDGDTSHIGFKVPMPDAFEI--ASTEVTVGRLPERADMVIPVATVSGLHARIQKKG--DSLLVTDLDSTNGT 133 (195)
Q Consensus 58 ~~~~L~~~~~g~~~~i~~~~~~~~~~~l--~~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~--~~~~l~Dl~S~nGT 133 (195)
...+|++..++.. .+.| ..+.++|||.+. . .|.|..+||+|++|..+- +.+.|.+++ .|++
T Consensus 15 ~~c~L~~~~~~~~-----------~I~Lp~~~g~~viGRgp~-t--~I~DkrcSR~qv~L~ad~~~~~v~vk~lG-~NP~ 79 (119)
T 1ujx_A 15 GRLWLQSPTGGPP-----------PIFLPSDGQALVLGRGPL-T--QVTDRKCSRNQVELIADPESRTVAVKQLG-VNPS 79 (119)
T ss_dssp CCEEEECCSSSCC-----------CCCCCTTSCCEEESBBTT-T--TBCCTTSCTTSEEEEEETTTTEEEEEECS-SSCC
T ss_pred ceEEEEeCCCCCC-----------cEEeccCCCCEEEcCCCC-c--ccccccccceeEEEEEecCCCEEEEEEcc-cCCc
Confidence 4567888776632 2455 368999999986 4 468999999999998764 789999995 8999
Q ss_pred EECCEEccCCceEECCCCCEEEE--CCceE
Q 040067 134 FIDEKRLRSGVVAVASPGSRITF--GDTHL 161 (195)
Q Consensus 134 ~VNg~~l~~~~~~~L~~gd~I~l--G~~~~ 161 (195)
+|||.++.+++.+.|++||+|.| |...+
T Consensus 80 ~vng~~l~k~~~~~L~~GD~l~Ll~g~y~~ 109 (119)
T 1ujx_A 80 TVGVQELKPGLSGSLSLGDVLYLVNGLYPL 109 (119)
T ss_dssp BSSSSBCCTTCEEEEETTCCCBCBTTBSCC
T ss_pred EECCEEecCCCEEEecCCCEEEEecCCeEE
Confidence 99999999999999999999985 44444
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=85.65 E-value=1 Score=36.42 Aligned_cols=40 Identities=10% Similarity=0.204 Sum_probs=32.7
Q ss_pred ceEEEC-CCeEEEcCCCCCCCEEeCCCCcCccceEEEEEC-CEEEE
Q 040067 81 DAFEIA-STEVTVGRLPERADMVIPVATVSGLHARIQKKG-DSLLV 124 (195)
Q Consensus 81 ~~~~l~-~~~~~IGR~~~~~di~l~~~~VSr~Ha~I~~~~-~~~~l 124 (195)
..+.|. ...++||+... |+|.|+.. ..|++|.+++ +.|.+
T Consensus 13 ~~~~L~~~~~~tiG~~~~-~~itl~~~---~~~i~l~~~~~~~~~v 54 (238)
T 1wv3_A 13 KMLNLRDGKTYTISEDER-ADITLKSL---GEVIHLEQNNQGTWQA 54 (238)
T ss_dssp EEEECCTTCCEEEESCTT-SSEECTTC---CCCEEEEECTTSCEEE
T ss_pred EEEecCCCcEEEECCCcc-ceEEecCC---CccEEEEEccCCeEEE
Confidence 346665 57899999998 99999977 7888999987 77776
No 40
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=59.66 E-value=4.4 Score=26.56 Aligned_cols=31 Identities=10% Similarity=0.127 Sum_probs=23.4
Q ss_pred CceEECCEEccCCceEECCCCCEEEECCceEE
Q 040067 131 NGTFIDEKRLRSGVVAVASPGSRITFGDTHLA 162 (195)
Q Consensus 131 nGT~VNg~~l~~~~~~~L~~gd~I~lG~~~~~ 162 (195)
...+|||+.+... ...+..||.|++++..+.
T Consensus 46 G~V~VNG~~v~~~-~~~v~~gd~I~v~~~~~~ 76 (79)
T 1p9k_A 46 GQVKVDGAVETRK-RCKIVAGQTVSFAGHSVQ 76 (79)
T ss_dssp HHHEETTBCCCCS-SCCCCSSEEEEETTEEEE
T ss_pred CEEEECCEEecCC-CCCCCCCCEEEECCEEEE
Confidence 4578999887432 357889999999987763
No 41
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=59.48 E-value=3.6 Score=27.31 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=21.1
Q ss_pred ceEECCEEccCCce--EECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVV--AVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~--~~L~~gd~I~l 156 (195)
-+.|||+.+++..+ ..|++||.|.|
T Consensus 36 AVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 36 TVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 47889999998654 79999999986
No 42
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=58.69 E-value=5.4 Score=25.02 Aligned_cols=24 Identities=8% Similarity=0.086 Sum_probs=18.2
Q ss_pred eEECCEEccCC--ceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSG--VVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~--~~~~L~~gd~I~l 156 (195)
+.|||+.+... ....|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 56788877754 2378999999975
No 43
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=58.37 E-value=6.5 Score=25.24 Aligned_cols=23 Identities=9% Similarity=0.300 Sum_probs=18.4
Q ss_pred ceEECCEEccCCceEECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
-..|||+.+... ..|++||.|.|
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEE
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 367888887764 79999999876
No 44
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=58.29 E-value=14 Score=31.17 Aligned_cols=46 Identities=9% Similarity=0.154 Sum_probs=33.2
Q ss_pred eEEEEECC-EEEEEeCCCCCceEECCEEccCCceEECCCCCEEEECCc
Q 040067 113 ARIQKKGD-SLLVTDLDSTNGTFIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 113 a~I~~~~~-~~~l~Dl~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
.+|.+..+ .++.. .|..-...|||+++....++.++.||+|.||..
T Consensus 63 ~~l~f~~~~~~iAv-tGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~ 109 (318)
T 3mml_A 63 FSARVCGGDVAIAV-TGADTDPAVNGIPFGTNSIHHVHDGQVISLGAP 109 (318)
T ss_dssp CEEEEESSCEEEEE-EESCCCCEETTEECCTTSCEEECTTCEEECCCC
T ss_pred eEEEECcCCEEEEE-ECCCCcceECCEEcCCCeEEEECCCCEEEeCCC
Confidence 34455554 32222 244566789999999998999999999999874
No 45
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=57.91 E-value=7.7 Score=25.99 Aligned_cols=26 Identities=8% Similarity=0.233 Sum_probs=20.5
Q ss_pred CceEECCEEccCCceEECCCCCEEEECC
Q 040067 131 NGTFIDEKRLRSGVVAVASPGSRITFGD 158 (195)
Q Consensus 131 nGT~VNg~~l~~~~~~~L~~gd~I~lG~ 158 (195)
...+|||+.+..+ ..|..||.|.+-.
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHY 51 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECC
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEe
Confidence 4588999988654 6899999998843
No 46
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=57.68 E-value=4 Score=28.37 Aligned_cols=25 Identities=28% Similarity=0.302 Sum_probs=20.8
Q ss_pred CCceEECCEEccCCceEECCCCCEEEE
Q 040067 130 TNGTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 130 ~nGT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
.+-+.|||+.+.. ...|++||+|.|
T Consensus 58 ~~~V~Vng~~v~~--d~~L~dGDRVEI 82 (97)
T 2hj1_A 58 TNKIGIFSRPIKL--TDVLKEGDRIEI 82 (97)
T ss_dssp TSEEEEEECSCCT--TCBCCTTCEEEE
T ss_pred ccEEEEcCEECCC--CccCCCCCEEEE
Confidence 5668899998886 478999999985
No 47
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=56.29 E-value=7.8 Score=25.70 Aligned_cols=23 Identities=9% Similarity=0.287 Sum_probs=18.7
Q ss_pred ceEECCEEccCCceEECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
-.+|||+.+... ..|++||+|.|
T Consensus 60 ~v~VN~~~v~~~--~~l~~gDeV~i 82 (89)
T 3po0_A 60 NVLRNGEAAALG--EATAAGDELAL 82 (89)
T ss_dssp EEEETTEECCTT--SBCCTTCEEEE
T ss_pred EEEECCEECCCC--cccCCCCEEEE
Confidence 477899888764 68999999875
No 48
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=54.36 E-value=3 Score=27.29 Aligned_cols=25 Identities=12% Similarity=0.203 Sum_probs=19.4
Q ss_pred ceEECCEEccCCce--EECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVV--AVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~--~~L~~gd~I~l 156 (195)
-+.+||+.+++..+ ..|++||.|.|
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 36778888877432 78999999986
No 49
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=53.46 E-value=13 Score=23.64 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=17.9
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
+.+||+.+... ..|++||.|.|
T Consensus 42 vavN~~~v~~~--~~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDE--EEIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTT--SBCCTTCEEEE
T ss_pred EEECCEECCCc--ccCCCCCEEEE
Confidence 56788888875 39999999875
No 50
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=53.29 E-value=11 Score=24.40 Aligned_cols=22 Identities=9% Similarity=0.218 Sum_probs=17.9
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
..|||+.+.. ...|++||.|.|
T Consensus 53 v~vN~~~v~~--~~~l~~gD~V~i 74 (81)
T 1fm0_D 53 AAVNQTLVSF--DHPLTDGDEVAF 74 (81)
T ss_dssp EEETTEECCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 7788888765 379999999876
No 51
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=52.47 E-value=8.3 Score=25.57 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=18.2
Q ss_pred ceEECCEEccCCceEECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
|..|||+.+.-. .+|++||.|+|
T Consensus 43 ~AkVNG~~v~L~--~~L~~gd~VeI 65 (78)
T 3hvz_A 43 GAKVDGRIVPID--YKVKTGEIIDV 65 (78)
T ss_dssp EEEETTEEECTT--CBCCTTCBEEE
T ss_pred EEEECCEEcCCC--cccCCCCEEEE
Confidence 356788888774 78999999875
No 52
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=50.91 E-value=6.9 Score=26.55 Aligned_cols=24 Identities=4% Similarity=-0.110 Sum_probs=18.4
Q ss_pred eEECCEEccCCc--eEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGV--VAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~--~~~L~~gd~I~l 156 (195)
+.|||+.++... ...|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 567888877643 268999999975
No 53
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=50.79 E-value=13 Score=27.13 Aligned_cols=24 Identities=8% Similarity=0.235 Sum_probs=19.5
Q ss_pred CceEECCEEccCCceEECCCCCEEEE
Q 040067 131 NGTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 131 nGT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
+.++|||+.+.++ ..|..||+|.|
T Consensus 34 G~V~VNG~~vk~s--~~V~~GD~I~I 57 (133)
T 1dm9_A 34 GKVHYNGQRSKPS--KIVELNATLTL 57 (133)
T ss_dssp TCEEETTEECCTT--CBCCTTCEEEE
T ss_pred CcEEECCEEcCCC--CEeCCCCEEEE
Confidence 4589999988664 68999998877
No 54
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=50.57 E-value=5.8 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=19.5
Q ss_pred eEECCEEcc--CCceEECCCCCEEEE
Q 040067 133 TFIDEKRLR--SGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~--~~~~~~L~~gd~I~l 156 (195)
++|||..+. .+..++|++||+|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 688998764 455789999999987
No 55
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=48.39 E-value=9.7 Score=25.92 Aligned_cols=22 Identities=5% Similarity=0.024 Sum_probs=18.2
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
++|||+.+.. ...|++||.|.|
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 6789988876 478999999976
No 56
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=48.05 E-value=5 Score=28.61 Aligned_cols=24 Identities=13% Similarity=0.169 Sum_probs=19.1
Q ss_pred eEECCEEcc--CCceEECCCCCEEEE
Q 040067 133 TFIDEKRLR--SGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~--~~~~~~L~~gd~I~l 156 (195)
++|||+.+. .+..++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 788998654 455689999999987
No 57
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=44.98 E-value=13 Score=24.79 Aligned_cols=24 Identities=17% Similarity=0.548 Sum_probs=18.0
Q ss_pred eEECCEEccC--CceEECCCCCEEEE
Q 040067 133 TFIDEKRLRS--GVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~--~~~~~L~~gd~I~l 156 (195)
.+|||+.+.. +...+|++||+|.|
T Consensus 61 v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 61 IYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEECCEEccCcCCCCcCCCCCCEEEE
Confidence 6789888763 22478999999875
No 58
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=43.24 E-value=7.5 Score=26.65 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=19.9
Q ss_pred CCceEECCEEccC--CceEECCCCCEEEE
Q 040067 130 TNGTFIDEKRLRS--GVVAVASPGSRITF 156 (195)
Q Consensus 130 ~nGT~VNg~~l~~--~~~~~L~~gd~I~l 156 (195)
.+-..|||+.+.. +....|++||.|.|
T Consensus 64 ~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 64 SINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred ccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 3458899987742 22478999999876
No 59
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=42.08 E-value=12 Score=23.96 Aligned_cols=23 Identities=9% Similarity=0.231 Sum_probs=16.4
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
..|||+.+.. ....|++||+|.|
T Consensus 45 vavN~~~v~~-~~~~l~~gDeV~i 67 (74)
T 3rpf_C 45 IALNDHLIDN-LNTPLKDGDVISL 67 (74)
T ss_dssp EEESSSEECC-TTCCCCTTCEEEE
T ss_pred EEECCEEcCC-CCcCCCCCCEEEE
Confidence 5677776442 2478999999975
No 60
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=41.95 E-value=11 Score=24.72 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=18.3
Q ss_pred eEECCEEccC--CceEECCCCCEEEE
Q 040067 133 TFIDEKRLRS--GVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~--~~~~~L~~gd~I~l 156 (195)
..|||+.+.. +....|++||.|.|
T Consensus 58 v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 58 ILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCCCCCCEEEE
Confidence 7789887762 23478999999976
No 61
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=41.41 E-value=5.7 Score=25.96 Aligned_cols=23 Identities=9% Similarity=0.042 Sum_probs=19.0
Q ss_pred ceEECCEEccCCceEECCCCCEEEE
Q 040067 132 GTFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
-+.|||+.+... ..|++||+|.|
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 478899988874 78999999865
No 62
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=40.31 E-value=17 Score=24.71 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=18.2
Q ss_pred eEECCEEcc--CCceEECCCCCEEEE
Q 040067 133 TFIDEKRLR--SGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~--~~~~~~L~~gd~I~l 156 (195)
.+||++.+. .+....|++||+|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 788998764 233579999999876
No 63
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=38.82 E-value=10 Score=23.74 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=17.9
Q ss_pred eEECCEEccCCc--eEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGV--VAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~--~~~L~~gd~I~l 156 (195)
+.|||+.+.... ...|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 678888877522 268999999875
No 64
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=38.24 E-value=39 Score=30.18 Aligned_cols=32 Identities=9% Similarity=0.165 Sum_probs=27.5
Q ss_pred CCCCceEECCEEccCCceEECCCCCEEEECCc
Q 040067 128 DSTNGTFIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 128 ~S~nGT~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
|..-...|||+++.....+.++.||+|+||..
T Consensus 295 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~ 326 (494)
T 3oep_A 295 GYGFVALLEGEEIPPGQSFLWPRGKTLRFRPR 326 (494)
T ss_dssp ESSEEEEETTEEECSSEEEEECTTCEEEEEEC
T ss_pred CCCCcceECCEEccCCeEEEECCCCEEEeCCC
Confidence 44556789999999999999999999999864
No 65
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=31.90 E-value=36 Score=25.38 Aligned_cols=27 Identities=19% Similarity=0.394 Sum_probs=20.7
Q ss_pred CceEECCEEcc-CCceEECCCCCEEEECCc
Q 040067 131 NGTFIDEKRLR-SGVVAVASPGSRITFGDT 159 (195)
Q Consensus 131 nGT~VNg~~l~-~~~~~~L~~gd~I~lG~~ 159 (195)
..+.|||+.+. ++ ..+..||.|.+-..
T Consensus 76 G~V~VNG~~v~~ps--~~V~~gD~I~V~~~ 103 (159)
T 1c05_A 76 GHILVDGSRVNIPS--YRVKPGQTIAVREK 103 (159)
T ss_dssp TCEEETTEECCCSS--CBCCTTCEEEECGG
T ss_pred CCEEECCEEeCcCC--cEeCCCCEEEEeCc
Confidence 45889999884 53 67899999988543
No 66
>1ok0_A Tendamistat, alpha-amylase inhibitor HOE-467A; 0.93A {Streptomyces tendae} SCOP: b.5.1.1 PDB: 1bvn_T 1hoe_A 2ait_A 3ait_A 4ait_A
Probab=31.27 E-value=68 Score=20.89 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=29.0
Q ss_pred ceEEEEECCEEEEEeCCCCCce-----EECCEEccCCceEECCCCCEEEECCc
Q 040067 112 HARIQKKGDSLLVTDLDSTNGT-----FIDEKRLRSGVVAVASPGSRITFGDT 159 (195)
Q Consensus 112 Ha~I~~~~~~~~l~Dl~S~nGT-----~VNg~~l~~~~~~~L~~gd~I~lG~~ 159 (195)
-|.-.+.+.+|.....+=.... |=||+..+- ..+.+|++++||+-
T Consensus 10 aCV~~~qsWRYT~V~N~Cs~tvsVtV~Y~dG~~~PC---rv~~PG~~~Tfg~g 59 (74)
T 1ok0_A 10 SCVTLYQSWRYSQADNGCAETVTVKVVYEDDTEGLC---YAVAPGQITTVGDG 59 (74)
T ss_dssp TTEEEEECSSEEEEEECSSSCEEEEEEETTSCBCCC---EEECTTCEEEEEEC
T ss_pred ccEEEecceEEEeecCCCcccEEEEEEEeCCCccee---EEeCCCceEEeccc
Confidence 4555666666665554322222 227777776 78999999999864
No 67
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=28.44 E-value=35 Score=21.23 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=16.2
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
..|||+.+.-. .+|..||.|.|
T Consensus 39 a~vNg~lvdl~--~~L~~~~~Vei 60 (73)
T 2kmm_A 39 AKVNHKLVPLS--YVLNSGDQVEV 60 (73)
T ss_dssp EEETTEECCTT--CBCCSSSBEEE
T ss_pred EEECCEEeCCC--cCcCCCCEEEE
Confidence 35788877763 78889987764
No 68
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=28.12 E-value=17 Score=25.12 Aligned_cols=22 Identities=5% Similarity=-0.019 Sum_probs=17.4
Q ss_pred eEECCEEccCCceEECCCCCEEEE
Q 040067 133 TFIDEKRLRSGVVAVASPGSRITF 156 (195)
Q Consensus 133 T~VNg~~l~~~~~~~L~~gd~I~l 156 (195)
..+|++++.. .+.|++||+|+|
T Consensus 63 aK~~~qrVgl--dh~L~d~DVV~I 84 (93)
T 2eki_A 63 VKHNPQKVGK--DHTLEDEDVIQI 84 (93)
T ss_dssp SSSSSEEECS--SCCCCSSEEECE
T ss_pred ccCCCEECCC--CcEecCCCEEEE
Confidence 3457888887 489999999875
No 69
>3u7z_A Putative metal binding protein rumgna_00854; the binding protein, transport protein, structural genomics, center for structural genomics; 1.30A {Ruminococcus gnavus}
Probab=26.81 E-value=42 Score=23.32 Aligned_cols=22 Identities=9% Similarity=0.188 Sum_probs=15.7
Q ss_pred ECCEEccCCc-eEECCCCCEEEE
Q 040067 135 IDEKRLRSGV-VAVASPGSRITF 156 (195)
Q Consensus 135 VNg~~l~~~~-~~~L~~gd~I~l 156 (195)
+||+.+..+. .+.|++||.|.|
T Consensus 73 vng~~~~~Ga~~~~v~dGD~i~~ 95 (101)
T 3u7z_A 73 KGGEQVNTSADQTPVSDGDAFEL 95 (101)
T ss_dssp ETTEECCSCGGGCBCCTTCEEEE
T ss_pred ECCEEhhhchhheEecCCCEEEE
Confidence 4666666543 488999999975
No 70
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=25.75 E-value=39 Score=25.51 Aligned_cols=25 Identities=24% Similarity=0.616 Sum_probs=19.6
Q ss_pred ceEECCEEccC--CceEECCCCCEEEE
Q 040067 132 GTFIDEKRLRS--GVVAVASPGSRITF 156 (195)
Q Consensus 132 GT~VNg~~l~~--~~~~~L~~gd~I~l 156 (195)
-++|||+.+.. +....|++||.|.|
T Consensus 54 ~VaVNg~~v~~~~~~dt~L~dGDeVai 80 (168)
T 1v8c_A 54 SVFLEGRDVRYLQGLSTPLSPGATLDL 80 (168)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEECCCcCCCccCCCCCCEEEE
Confidence 37889998875 22378999999988
No 71
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=24.74 E-value=68 Score=27.94 Aligned_cols=36 Identities=14% Similarity=0.180 Sum_probs=24.8
Q ss_pred CCCceEECCEEccCCceEECCCCC--EEEECCceEEEEE
Q 040067 129 STNGTFIDEKRLRSGVVAVASPGS--RITFGDTHLAMFR 165 (195)
Q Consensus 129 S~nGT~VNg~~l~~~~~~~L~~gd--~I~lG~~~~~~~~ 165 (195)
..+|.+|||+++.... ..+..++ +|+.|...+..+.
T Consensus 392 ~~ggv~vn~~~v~d~~-~~~~~~~~~~l~~GKk~~~~v~ 429 (432)
T 1h3f_A 392 QNRGLRLDGEVLTDPM-LQVDLSRPRILQRGKDRFVRVR 429 (432)
T ss_dssp HTTCEEETTEECCCTT-CEEECSSCEEEEETTTEEEEEE
T ss_pred HhCCEEECCEEecCcc-ceecCCCcEEEEeCCeeEEEEE
Confidence 3578999999998643 3333434 8999998774443
No 72
>2vqe_D 30S ribosomal protein S4; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: d.66.1.2 PDB: 1hnw_D* 1hnx_D* 1hnz_D* 1ibk_D* 1fka_D* 1ibm_D 1xmo_D* 1ibl_D* 1xnq_D* 1xnr_D* 1yl4_G 2b64_D* 2b9m_D* 2b9o_D* 2hgi_G 2hgp_G 2hgr_G 2hhh_D* 1xmq_D* 2j02_D* ...
Probab=21.48 E-value=70 Score=24.98 Aligned_cols=27 Identities=15% Similarity=0.362 Sum_probs=20.7
Q ss_pred CceEECCEEcc-CCceEECCCCCEEEECCc
Q 040067 131 NGTFIDEKRLR-SGVVAVASPGSRITFGDT 159 (195)
Q Consensus 131 nGT~VNg~~l~-~~~~~~L~~gd~I~lG~~ 159 (195)
..+.|||+.+. ++ ..+..||+|.+-..
T Consensus 124 G~V~VNG~~v~~ps--~~V~~gD~I~V~~~ 151 (209)
T 2vqe_D 124 GHITVNGRRVDLPS--YRVRPGDEIAVAEK 151 (209)
T ss_dssp TCEEETTEECCCTT--CBCCTTCEEEECGG
T ss_pred CCEEECCEEeCcCC--cCcCCCCEEEEcCc
Confidence 34789999884 53 68899999998543
Done!