BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040068
         (123 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A8MS78|Y1583_ARATH Uncharacterized protein At1g05835 OS=Arabidopsis thaliana
           GN=At1g05835 PE=2 SV=1
          Length = 127

 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 45/82 (54%), Gaps = 4/82 (4%)

Query: 44  QEWRLTLNNTC-ICTQLELKLSCKGF--QTVEPIDPSIIAISGDECTVVNNGNPFYGFTT 100
           +++R+ + N C +C  + L+L C+GF    V+P    +++ S   C VVN+G P     T
Sbjct: 46  KKFRVEVMNKCPMCPIINLRLKCQGFPQSLVDPTFLRVLSSSAGNC-VVNDGLPLSPMQT 104

Query: 101 LSFNYAWDTSFPFKPISSQISC 122
           LSFNY+    F  +P+S    C
Sbjct: 105 LSFNYSNTHQFALRPLSWSFQC 126


>sp|P44888|SLT_HAEIN Putative soluble lytic murein transglycosylase OS=Haemophilus
           influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
           GN=slt PE=3 SV=1
          Length = 593

 Score = 31.6 bits (70), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 35  QTGKTVPNKQEWRLTLNNTCICTQLELKLSCKGFQTVE-PIDPSIIAISGD 84
           + G+    KQ WR+ L+N    TQL+L    K  Q  E  +D SI+A + D
Sbjct: 368 ELGRNGLAKQRWRILLDNVDFTTQLKLSEYAKNQQWFELAVDASIVAKAWD 418


>sp|Q9LIB6|COBL8_ARATH COBRA-like protein 8 OS=Arabidopsis thaliana GN=COBL8 PE=2 SV=1
          Length = 653

 Score = 30.0 bits (66), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 57  TQLELKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNP 94
           T +EL+ +  GFQ     + SIIA++G   TV+  G P
Sbjct: 525 TAVELRNAAPGFQKAYSFNGSIIAVNGKNTTVLMEGLP 562


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,199,127
Number of Sequences: 539616
Number of extensions: 1618482
Number of successful extensions: 3134
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3131
Number of HSP's gapped (non-prelim): 3
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)