Query 040068
Match_columns 123
No_of_seqs 107 out of 131
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 07:12:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hcz_X Beta-expansin 1A; domai 57.6 13 0.00045 28.8 4.5 54 46-106 89-153 (245)
2 1n10_A PHL P I, pollen allerge 54.6 19 0.00067 27.7 5.0 54 46-106 89-153 (241)
3 3e8v_A Possible transglutamina 37.9 28 0.00096 22.9 3.0 23 88-111 8-30 (82)
4 3d30_A YOAJ, expansin like pro 34.8 23 0.00077 26.5 2.5 52 46-106 65-119 (208)
5 3tiw_A Transitional endoplasmi 31.9 19 0.00065 26.7 1.6 32 87-119 138-169 (187)
6 2jv2_A Putative uncharacterize 30.3 31 0.0011 22.4 2.3 28 92-120 39-66 (83)
7 3qwz_A Transitional endoplasmi 29.5 13 0.00045 28.1 0.4 32 87-119 141-172 (211)
8 1b4r_A Protein (PKD1_human); P 29.2 28 0.00095 22.4 1.9 12 93-104 8-19 (80)
9 3idu_A Uncharacterized protein 28.8 1.4E+02 0.0049 20.5 7.0 69 25-109 15-84 (127)
10 3vhs_A ATPase wrnip1; zinc fin 23.9 21 0.0007 19.1 0.4 8 42-49 1-8 (29)
11 2l0d_A Cell surface protein; s 22.6 1.8E+02 0.0063 19.6 7.0 30 26-55 2-32 (114)
12 2htg_A NHE-1, NHE1 isoform of 22.0 9.9 0.00034 20.4 -1.1 22 74-96 2-23 (28)
13 3f9x_A Histone-lysine N-methyl 21.9 30 0.001 24.1 1.0 22 89-110 134-155 (166)
14 1p65_A Nucleocapsid protein; v 21.5 63 0.0021 20.7 2.4 13 16-28 32-44 (73)
No 1
>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}
Probab=57.56 E-value=13 Score=28.78 Aligned_cols=54 Identities=13% Similarity=0.210 Sum_probs=39.0
Q ss_pred EEEEEeecccc--ccccEEEEcCCcccccc-------cCCCceEEeCC--eeEEccCCcccCCCCeEEEEee
Q 040068 46 WRLTLNNTCIC--TQLELKLSCKGFQTVEP-------IDPSIIAISGD--ECTVVNNGNPFYGFTTLSFNYA 106 (123)
Q Consensus 46 ~~VtI~N~C~C--~~~~V~l~C~gF~S~~~-------VdP~i~r~~~d--~C~Lvn~G~pi~~~~~v~F~Ya 106 (123)
-.|+|++.|.| +..++-|+=.-|...-. .+..++.+.+. .| +...|..|+|+.-
T Consensus 89 v~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C-------~~~gg~ni~f~v~ 153 (245)
T 2hcz_X 89 VTVYITDMNYEPIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRC-------KYPAGQKIVFHIE 153 (245)
T ss_dssp EEEEEEEECCCTTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECC-------CCSTTCCCEEEEC
T ss_pred EEEEEEeccCCCCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEec-------CCCCCCcEEEEEc
Confidence 58999999999 77888898888875433 57778877743 48 3333456777775
No 2
>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3
Probab=54.61 E-value=19 Score=27.75 Aligned_cols=54 Identities=11% Similarity=0.178 Sum_probs=39.5
Q ss_pred EEEEEeecccc--ccccEEEEcCCcccccc-------cCCCceEEeCC--eeEEccCCcccCCCCeEEEEee
Q 040068 46 WRLTLNNTCIC--TQLELKLSCKGFQTVEP-------IDPSIIAISGD--ECTVVNNGNPFYGFTTLSFNYA 106 (123)
Q Consensus 46 ~~VtI~N~C~C--~~~~V~l~C~gF~S~~~-------VdP~i~r~~~d--~C~Lvn~G~pi~~~~~v~F~Ya 106 (123)
=.|+|++.|.| +..++-|+=.-|...-. .+..++.+.+. .| +...|..|+|+.-
T Consensus 89 v~V~VtD~C~C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C-------~~~gg~~i~f~v~ 153 (241)
T 1n10_A 89 VVVHITDDNEEPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKC-------KYPEGTKVTFHVE 153 (241)
T ss_dssp EEEEEEEECSSCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCC-------CCCTTCCCEEEEC
T ss_pred EEEEEeEecCCCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeC-------CCCCCCceEEEEc
Confidence 48999999999 56889999999976543 67788887743 58 3333456777776
No 3
>3e8v_A Possible transglutaminase-family protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.40A {Bacteroides fragilis nctc 9343}
Probab=37.89 E-value=28 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.3
Q ss_pred EccCCcccCCCCeEEEEeecCCcc
Q 040068 88 VVNNGNPFYGFTTLSFNYAWDTSF 111 (123)
Q Consensus 88 Lvn~G~pi~~~~~v~F~Yaw~~~f 111 (123)
.-.+|+|+ +|..|.|.|-|...|
T Consensus 8 ~d~~GkPV-~gA~Vefe~yNyae~ 30 (82)
T 3e8v_A 8 TDAEGQPV-ADATVEFKVYNYAEF 30 (82)
T ss_dssp ECTTSCBC-TTCEEEEEEEETTEE
T ss_pred EcCCCCCC-CCCEEEEEEEEchhe
Confidence 34689999 489999999887555
No 4
>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A
Probab=34.76 E-value=23 Score=26.54 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=39.3
Q ss_pred EEEEEeecc-ccccccEEEEcCCcccccccCCCceEEeC--CeeEEccCCcccCCCCeEEEEee
Q 040068 46 WRLTLNNTC-ICTQLELKLSCKGFQTVEPIDPSIIAISG--DECTVVNNGNPFYGFTTLSFNYA 106 (123)
Q Consensus 46 ~~VtI~N~C-~C~~~~V~l~C~gF~S~~~VdP~i~r~~~--d~C~Lvn~G~pi~~~~~v~F~Ya 106 (123)
=.|+|++.| .|+..++-|+=.-|......+..++.+.. -.| +. +| .|+|+.-
T Consensus 65 v~V~v~D~CP~C~~~~~DLS~~aF~~la~~~~G~i~v~~~~V~C-------~~-~G-~i~f~v~ 119 (208)
T 3d30_A 65 TTVYVTDLYPEGARGALDLSPNAFRKIGNMKDGKINIKWRVVKA-------PI-TG-NFTYRIK 119 (208)
T ss_dssp EEEEEEEECTTCCTTCEEECHHHHHHHSCGGGSSEEEEEEEECC-------CC-CS-CCEEEEC
T ss_pred EEEEEEECCCCCCCCeEECCHHHHHHhcccCCCEEEEEEEEeCC-------CC-CC-ceeEEEc
Confidence 579999999 59999999999999876666888887773 247 32 23 6677665
No 5
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=31.88 E-value=19 Score=26.73 Aligned_cols=32 Identities=9% Similarity=0.056 Sum_probs=25.6
Q ss_pred EEccCCcccCCCCeEEEEeecCCccceeeeeee
Q 040068 87 TVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQ 119 (123)
Q Consensus 87 ~Lvn~G~pi~~~~~v~F~Yaw~~~f~~~p~ss~ 119 (123)
||.+.|+|+..|..|+..+. .....|.+++-.
T Consensus 138 ~l~~~~rpV~~GD~i~v~~~-~~~v~f~Vv~t~ 169 (187)
T 3tiw_A 138 YFLEAYRPIRKGDIFLVRGG-MRAVEFKVVETD 169 (187)
T ss_dssp HHTTTCCEEETTCEEEEECS-SSEEEEEEEEEE
T ss_pred HhccCCceeeCCCEEEEccC-CCEEEEEEEEec
Confidence 37777899999999999985 467888887654
No 6
>2jv2_A Putative uncharacterized protein PH1500; AAA ATPase NC-domain-like, unknown function; NMR {Pyrococcus horikoshii}
Probab=30.28 E-value=31 Score=22.43 Aligned_cols=28 Identities=11% Similarity=0.085 Sum_probs=21.5
Q ss_pred CcccCCCCeEEEEeecCCccceeeeeeee
Q 040068 92 GNPFYGFTTLSFNYAWDTSFPFKPISSQI 120 (123)
Q Consensus 92 G~pi~~~~~v~F~Yaw~~~f~~~p~ss~~ 120 (123)
|+|+..|+.|+...-. .+++|.+++.++
T Consensus 39 grPV~~GD~I~i~~~G-~~i~F~Vv~t~P 66 (83)
T 2jv2_A 39 GKTVRTGDVIGISILG-KEVKFKVVQAYP 66 (83)
T ss_dssp TSEECTTCEEEEEETT-EEEEEEEEEEES
T ss_pred CCCccCCCEEEEeeCC-CEEEEEEEEecC
Confidence 5899999999987543 677788877654
No 7
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=29.47 E-value=13 Score=28.14 Aligned_cols=32 Identities=6% Similarity=0.016 Sum_probs=25.3
Q ss_pred EEccCCcccCCCCeEEEEeecCCccceeeeeee
Q 040068 87 TVVNNGNPFYGFTTLSFNYAWDTSFPFKPISSQ 119 (123)
Q Consensus 87 ~Lvn~G~pi~~~~~v~F~Yaw~~~f~~~p~ss~ 119 (123)
||++.|+|+..|..|+..|. .....|.+++-.
T Consensus 141 ~l~~~~rPV~~GD~i~v~~~-~~~v~f~Vv~t~ 172 (211)
T 3qwz_A 141 YFLEAYRPIRKGDIFLVRGG-MRAVEFXVVETD 172 (211)
T ss_dssp HHTTCCEEEETTCEEECCCT-TSCCEEEEEEEE
T ss_pred HHhhCCceeecCCEEEEccC-CcEEEEEEEeec
Confidence 37778999999999998876 367888887643
No 8
>1b4r_A Protein (PKD1_human); PKD domain 1 from human polycystein-1, polycystin (precursor), membrane protein; NMR {Homo sapiens} SCOP: b.1.3.1
Probab=29.16 E-value=28 Score=22.44 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.8
Q ss_pred cccCCCCeEEEE
Q 040068 93 NPFYGFTTLSFN 104 (123)
Q Consensus 93 ~pi~~~~~v~F~ 104 (123)
+|+..|++|.|.
T Consensus 8 ~~~~~g~~v~F~ 19 (80)
T 1b4r_A 8 GPLASGQLAAFH 19 (80)
T ss_dssp SCCBSSEEEEEE
T ss_pred CcccCCCeEEEE
Confidence 344445555554
No 9
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=28.81 E-value=1.4e+02 Score=20.46 Aligned_cols=69 Identities=14% Similarity=0.141 Sum_probs=40.4
Q ss_pred CCCceeEEEeecCCCCCCe-eeEEEEEeeccccccccEEEEcCCcccccccCCCceEEeCCeeEEccCCcccCCCCeEEE
Q 040068 25 TLDDIKVSQSQTGKTVPNK-QEWRLTLNNTCICTQLELKLSCKGFQTVEPIDPSIIAISGDECTVVNNGNPFYGFTTLSF 103 (123)
Q Consensus 25 ~~sdi~V~Q~~tg~~~~G~-p~~~VtI~N~C~C~~~~V~l~C~gF~S~~~VdP~i~r~~~d~C~Lvn~G~pi~~~~~v~F 103 (123)
...|+.|.-+.-.....|+ -.+.|+|.|.=..+..+..|.-- +|=.+. -.....|++|++-++
T Consensus 15 ~~pDL~V~is~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~ly-------vng~~v---------~t~~v~La~G~s~tv 78 (127)
T 3idu_A 15 EFPDLTVEIKGPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVY-------INGTLY---------KNWTVSLGPKEEKVL 78 (127)
T ss_dssp SSCCEEEEEESCSEECTTCCEEEEEEEEECSSSCEEEEEEEEE-------ETTEEE---------EEEEEEECTTCEEEE
T ss_pred cCCCeEEEecCCCcccCCCEEEEEEEEEECCCCccCCcEEEEE-------ECCEEE---------eeEEeccCCCCeEEE
Confidence 4678888444333333454 45999999988777666554321 121111 111225889999777
Q ss_pred EeecCC
Q 040068 104 NYAWDT 109 (123)
Q Consensus 104 ~Yaw~~ 109 (123)
.|.|..
T Consensus 79 ~f~~~~ 84 (127)
T 3idu_A 79 TFNWTP 84 (127)
T ss_dssp EEEECC
T ss_pred EEEEEc
Confidence 777753
No 10
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=23.91 E-value=21 Score=19.08 Aligned_cols=8 Identities=13% Similarity=0.451 Sum_probs=3.3
Q ss_pred CeeeEEEE
Q 040068 42 NKQEWRLT 49 (123)
Q Consensus 42 G~p~~~Vt 49 (123)
|.|||+|+
T Consensus 1 gspef~vq 8 (29)
T 3vhs_A 1 GSPEFQVQ 8 (29)
T ss_dssp ----CEEE
T ss_pred CCCceeee
Confidence 56899886
No 11
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}
Probab=22.63 E-value=1.8e+02 Score=19.61 Aligned_cols=30 Identities=13% Similarity=0.056 Sum_probs=19.1
Q ss_pred CCceeEEEeecCCCC-CCeeeEEEEEeeccc
Q 040068 26 LDDIKVSQSQTGKTV-PNKQEWRLTLNNTCI 55 (123)
Q Consensus 26 ~sdi~V~Q~~tg~~~-~G~p~~~VtI~N~C~ 55 (123)
+.|+.|+...-.... +..-.+.|+|.|.=.
T Consensus 2 ~PDL~vt~itP~~~~~~~~~ti~atVkN~G~ 32 (114)
T 2l0d_A 2 IPDLVPVSLTPVTVVPNTVNTMTATIENQGN 32 (114)
T ss_dssp CCCEEEEEEECSEECTTSEEEEEEEEEECSS
T ss_pred CCCcEEEeccCCCcCCCCeEEEEEEEEECCC
Confidence 457777766322233 345569999999763
No 12
>2htg_A NHE-1, NHE1 isoform of Na+/H+ exchanger 1, solute; membrane protein, transmembrane segment, helix-KINK-helix; NMR {Synthetic}
Probab=22.03 E-value=9.9 Score=20.42 Aligned_cols=22 Identities=14% Similarity=0.166 Sum_probs=16.6
Q ss_pred cCCCceEEeCCeeEEccCCcccC
Q 040068 74 IDPSIIAISGDECTVVNNGNPFY 96 (123)
Q Consensus 74 VdP~i~r~~~d~C~Lvn~G~pi~ 96 (123)
|||+++....+.. |+|||-.|.
T Consensus 2 V~~~L~~lvfGES-llNDavaiV 23 (28)
T 2htg_A 2 INELLHILVFGES-LLNDAVTVV 23 (28)
T ss_dssp CSSTTHHHHTTTT-TTTTTTTTT
T ss_pred CCceEEEEEEeee-eecccEEEE
Confidence 5777777666667 999987764
No 13
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=21.93 E-value=30 Score=24.07 Aligned_cols=22 Identities=14% Similarity=0.125 Sum_probs=18.0
Q ss_pred ccCCcccCCCCeEEEEeecCCc
Q 040068 89 VNNGNPFYGFTTLSFNYAWDTS 110 (123)
Q Consensus 89 vn~G~pi~~~~~v~F~Yaw~~~ 110 (123)
+-.-+.|.+|+.++|.|.++..
T Consensus 134 ~~A~rdI~~GEELt~dY~~~~~ 155 (166)
T 3f9x_A 134 LIASRDIAAGEELLFDYGDRSK 155 (166)
T ss_dssp EEESSCBCTTCBCEECCCCCCH
T ss_pred EEECCcCCCCCEEEEEcCCChh
Confidence 3455899999999999998753
No 14
>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductive svirus} SCOP: d.254.1.1
Probab=21.51 E-value=63 Score=20.74 Aligned_cols=13 Identities=38% Similarity=0.762 Sum_probs=11.1
Q ss_pred hhccCccCCCCCc
Q 040068 16 IITKGNCQCTLDD 28 (123)
Q Consensus 16 l~~~g~~~C~~sd 28 (123)
..+||.|.|+++|
T Consensus 32 afNQGaGt~sLs~ 44 (73)
T 1p65_A 32 AFNQGAGTCTLSD 44 (73)
T ss_dssp HHHHTCSEEEECT
T ss_pred HHhCCCceEEecc
Confidence 5689999999886
Done!