Query 040068
Match_columns 123
No_of_seqs 107 out of 131
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 07:12:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040068.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040068hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b4ra_ b.1.3.1 (A:) Polycyste 34.9 10 0.00074 22.9 2.1 17 88-104 3-19 (80)
2 d1f3ub_ b.65.1.1 (B:) TFIIF al 32.5 12 0.00088 25.4 2.4 39 37-80 1-39 (149)
3 d1p65a_ d.254.1.1 (A:) Arteriv 31.0 16 0.0012 21.0 2.4 15 14-28 19-33 (57)
4 d2gu3a1 d.17.1.6 (A:99-161) Un 29.2 15 0.0011 21.5 2.1 24 30-54 19-42 (63)
5 d1neia_ d.253.1.1 (A:) Hypothe 27.8 14 0.001 21.6 1.7 32 42-78 2-34 (60)
6 d1cr5a2 d.31.1.1 (A:108-210) C 20.5 36 0.0026 21.4 2.9 28 91-119 41-68 (103)
7 d1v43a2 b.40.6.3 (A:304-373) H 18.9 42 0.003 18.6 2.7 30 88-117 36-65 (70)
8 d1f00i1 b.1.14.1 (I:658-752) I 17.7 36 0.0026 20.7 2.3 19 88-107 27-45 (95)
9 d3brda3 b.42.7.1 (A:381-541) D 15.6 80 0.0058 21.5 3.9 49 55-107 69-122 (161)
10 d2cbpa_ b.6.1.1 (A:) Plantacya 15.4 44 0.0032 20.6 2.3 18 91-108 20-37 (96)
No 1
>d1b4ra_ b.1.3.1 (A:) Polycystein-1, PKD-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=34.89 E-value=10 Score=22.85 Aligned_cols=17 Identities=18% Similarity=0.258 Sum_probs=10.7
Q ss_pred EccCCcccCCCCeEEEE
Q 040068 88 VVNNGNPFYGFTTLSFN 104 (123)
Q Consensus 88 Lvn~G~pi~~~~~v~F~ 104 (123)
++..-.|+..|+++.|.
T Consensus 3 ~~~p~~p~~~G~~v~F~ 19 (80)
T d1b4ra_ 3 LVGPHGPLASGQLAAFH 19 (80)
T ss_dssp EECCCSCCBSSEEEEEE
T ss_pred eecCCCCccCCCeEEEE
Confidence 44455566677777775
No 2
>d1f3ub_ b.65.1.1 (B:) TFIIF alpha subunit, Rap74 {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.55 E-value=12 Score=25.43 Aligned_cols=39 Identities=13% Similarity=0.232 Sum_probs=32.2
Q ss_pred CCCCCCeeeEEEEEeeccccccccEEEEcCCcccccccCCCceE
Q 040068 37 GKTVPNKQEWRLTLNNTCICTQLELKLSCKGFQTVEPIDPSIIA 80 (123)
Q Consensus 37 g~~~~G~p~~~VtI~N~C~C~~~~V~l~C~gF~S~~~VdP~i~r 80 (123)
|...+++.||.|.|..+ .+.+-+=.-|.|..+|||+.-+
T Consensus 1 ~~~~~~v~Ey~vrv~k~-----~~kky~vmrF~s~~~VD~~~~~ 39 (149)
T d1f3ub_ 1 GPSSQNVTEYVVRVPKN-----TTKKYNIMAFNAADKVNFATWN 39 (149)
T ss_dssp CCSCCEEEEEEEECCSC-----CSEEEEEEEECGGGCCCGGGCS
T ss_pred CCCCCCcEEEEEEecCC-----CCceEEEEEecCCCCCChhhCc
Confidence 34567899999999775 5788888999999999998765
No 3
>d1p65a_ d.254.1.1 (A:) Arterivirus nucleocapsid protein {PRRSV (Porcine reproductive and respiratory syndrome virus) [TaxId: 28344]}
Probab=31.02 E-value=16 Score=21.02 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=12.1
Q ss_pred HHhhccCccCCCCCc
Q 040068 14 FTIITKGNCQCTLDD 28 (123)
Q Consensus 14 l~l~~~g~~~C~~sd 28 (123)
....+||.|.|+++|
T Consensus 19 qtafNQGaG~~~Ls~ 33 (57)
T d1p65a_ 19 QTAFNQGAGTCTLSD 33 (57)
T ss_dssp HHHHHHTCSEEEECT
T ss_pred HHHHhCCCceEEEec
Confidence 346789999999886
No 4
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=29.16 E-value=15 Score=21.54 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=17.4
Q ss_pred eEEEeecCCCCCCeeeEEEEEeecc
Q 040068 30 KVSQSQTGKTVPNKQEWRLTLNNTC 54 (123)
Q Consensus 30 ~V~Q~~tg~~~~G~p~~~VtI~N~C 54 (123)
.|...+-| +-+|+|.|+|+-.|.=
T Consensus 19 ki~~v~LG-~~~~~pvWEVtY~~~~ 42 (63)
T d2gu3a1 19 KQKEVHLA-REGNVLLWEVTYLDKE 42 (63)
T ss_dssp EEEEEEEE-EETTEEEEEEEEECTT
T ss_pred eeeEEeee-eECCEEEEEEEEEeCC
Confidence 44555556 3679999999998753
No 5
>d1neia_ d.253.1.1 (A:) Hypothetical protein YoaG {Escherichia coli [TaxId: 562]}
Probab=27.79 E-value=14 Score=21.60 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=19.2
Q ss_pred CeeeEEEEEeeccccccccEEEEcCCccc-ccccCCCc
Q 040068 42 NKQEWRLTLNNTCICTQLELKLSCKGFQT-VEPIDPSI 78 (123)
Q Consensus 42 G~p~~~VtI~N~C~C~~~~V~l~C~gF~S-~~~VdP~i 78 (123)
|+-.|.|||+|+- .+|-++= .|++ .++.||.+
T Consensus 2 gk~~~~lTvTNnn----NGVSVD~-e~~~~~~L~~p~~ 34 (60)
T d1neia_ 2 GKATYTVTVTNNS----NGVSVDY-ETETPMTLLVPEV 34 (60)
T ss_dssp CCCCEEEEEEETT----TCCEEEE-ECCCSGGGTCHHH
T ss_pred CcceEEEEEEeCC----CceEecc-cccCHHHhcChHH
Confidence 6788999999975 2333332 2333 25666643
No 6
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc {Baker's yeast (Saccharomyces cerevisiae), sec18p [TaxId: 4932]}
Probab=20.46 E-value=36 Score=21.36 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=23.4
Q ss_pred CCcccCCCCeEEEEeecCCccceeeeeee
Q 040068 91 NGNPFYGFTTLSFNYAWDTSFPFKPISSQ 119 (123)
Q Consensus 91 ~G~pi~~~~~v~F~Yaw~~~f~~~p~ss~ 119 (123)
.|+++.+|+.+.|.|-. ..|.|++.+..
T Consensus 41 ~~Q~ft~gQ~l~f~f~~-~~l~l~Vk~v~ 68 (103)
T d1cr5a2 41 ESQIFSPTQYLIMEFQG-HFFDLKIRNVQ 68 (103)
T ss_dssp TTCEECTTCEEEEEETT-EEEEEEEEEEE
T ss_pred cCCCCCCCcEEEEEECC-cEEEEEEEEEE
Confidence 57899999999999986 78888886543
No 7
>d1v43a2 b.40.6.3 (A:304-373) Hypothetical protein PH0022, C-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}
Probab=18.86 E-value=42 Score=18.55 Aligned_cols=30 Identities=10% Similarity=-0.029 Sum_probs=24.3
Q ss_pred EccCCcccCCCCeEEEEeecCCccceeeee
Q 040068 88 VVNNGNPFYGFTTLSFNYAWDTSFPFKPIS 117 (123)
Q Consensus 88 Lvn~G~pi~~~~~v~F~Yaw~~~f~~~p~s 117 (123)
.+.+..++..|++|.|....+.-+-|.+.+
T Consensus 36 ~~~~~~~~~~g~~i~l~~d~~~~~lFD~~t 65 (70)
T d1v43a2 36 KLPGHIPIEPGREVKVIMDLDMIHVFDKDT 65 (70)
T ss_dssp EEESCCCCCTTCEEEEEEEGGGCEEEETTT
T ss_pred EECCCCCCCCCCEEEEEECcccEEEEcchh
Confidence 566666888999999999998888777654
No 8
>d1f00i1 b.1.14.1 (I:658-752) Intimin {Escherichia coli [TaxId: 562]}
Probab=17.72 E-value=36 Score=20.70 Aligned_cols=19 Identities=16% Similarity=0.366 Sum_probs=14.9
Q ss_pred EccCCcccCCCCeEEEEeec
Q 040068 88 VVNNGNPFYGFTTLSFNYAW 107 (123)
Q Consensus 88 Lvn~G~pi~~~~~v~F~Yaw 107 (123)
+..+|+|| +|.+|.|.-..
T Consensus 27 v~D~gnpv-~g~~V~~~~~~ 45 (95)
T d1f00i1 27 VMKGDKPV-SNQEVTFTTTL 45 (95)
T ss_dssp EEETTEEC-TTCEEEEEESS
T ss_pred EEECCccc-CCcEEEEEECC
Confidence 56779999 59999998654
No 9
>d3brda3 b.42.7.1 (A:381-541) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=15.57 E-value=80 Score=21.53 Aligned_cols=49 Identities=12% Similarity=0.107 Sum_probs=35.8
Q ss_pred ccccccEEEEc--CCcccccccCCCceEEeCCeeEEccC---CcccCCCCeEEEEeec
Q 040068 55 ICTQLELKLSC--KGFQTVEPIDPSIIAISGDECTVVNN---GNPFYGFTTLSFNYAW 107 (123)
Q Consensus 55 ~C~~~~V~l~C--~gF~S~~~VdP~i~r~~~d~C~Lvn~---G~pi~~~~~v~F~Yaw 107 (123)
.|.-+-|+|-| .|.+| ||-++|+-+....++.+ +.|+..-..+.|+--.
T Consensus 69 I~Ygs~V~Lv~~~TGv~s----ppLiIRKVdk~~~~ld~~~~ddpVSQLhK~Af~~~d 122 (161)
T d3brda3 69 VYYGSVVKLVDSVTGIAL----PRLRIRKVDKQQVILDASCSEEPVSQLHKCAFQMID 122 (161)
T ss_dssp CBTTCEEEEEETTTCCBC----CCEEEEEEETTEEECCTTGGGSBCBTTEEEEEEESS
T ss_pred EEeCCEEEEEEcCCCccC----CCEEEEEEcCCeEeccCccCCCcHHhhheeEEEcCC
Confidence 57777899999 55555 78899976444436666 4799999999997643
No 10
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]}
Probab=15.45 E-value=44 Score=20.58 Aligned_cols=18 Identities=33% Similarity=0.425 Sum_probs=15.7
Q ss_pred CCcccCCCCeEEEEeecC
Q 040068 91 NGNPFYGFTTLSFNYAWD 108 (123)
Q Consensus 91 ~G~pi~~~~~v~F~Yaw~ 108 (123)
+++++..|.++.|+|...
T Consensus 20 ~~~~F~vGD~LvF~y~~~ 37 (96)
T d2cbpa_ 20 KGKRFRAGDILLFNYNPS 37 (96)
T ss_dssp TTCCBCTTCEEEEECCTT
T ss_pred CCCcEecCCEEEEecCCC
Confidence 568899999999999965
Done!