BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040070
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana
Length = 139
Score = 213 bits (543), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 96/131 (73%), Positives = 114/131 (87%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
MAVHD+CKL+FLELKAKR HRFIV+KI+EK +QV VE+VG P +YE+F LPADECR+
Sbjct: 8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
A++DFDF T+EN QKSKIFFIAW PD ++VRSKM+YASSKDRFKRELDGI VELQATDP+
Sbjct: 68 AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 121 EMSLDIIKGRA 131
EM LD+ + RA
Sbjct: 128 EMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin
Length = 137
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
+AV D+C KF ELK HR++ FK++ +V VE VG P A+YEDF LP +CR+
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
A+FD++F + Q++KI FI WAPD++ ++SKM+Y S+KD K++L GI VE+QATD +
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 121 EMSLDIIKGRA 131
E+S D + RA
Sbjct: 122 EISEDAVSERA 132
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga
Length = 137
Score = 136 bits (343), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/131 (48%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
+AV D+C KF ELK HR++ FK++ +V VE VG P A+YEDF LP +CR+
Sbjct: 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRY 62
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
A+FD++F + Q++KI FI WAPD++ ++SKM+Y S+KD K++L GI VE+QATD +
Sbjct: 63 AIFDYEFQV-DGGQRNKITFILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAA 121
Query: 121 EMSLDIIKGRA 131
E+S D + RA
Sbjct: 122 EISEDAVSERA 132
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form
pdb|1CFY|B Chain B, Yeast Cofilin, Monoclinic Crystal Form
pdb|1QPV|A Chain A, Yeast Cofilin
pdb|1COF|A Chain A, Yeast Cofilin, Orthorhombic Crystal Form
Length = 143
Score = 106 bits (264), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/128 (40%), Positives = 83/128 (64%), Gaps = 2/128 (1%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
+AV DE F +LK + ++FI+F +++ ++ V+ S SY+ F + LP ++C +
Sbjct: 6 VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKET-STDPSYDAFLEKLPENDCLY 64
Query: 61 AVFDFDFTTSENVQK-SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDP 119
A++DF++ + N K SKI F W+PD + VRSKMVYASSKD +R L+G+ ++Q TD
Sbjct: 65 AIYDFEYEINGNEGKRSKIVFFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDF 124
Query: 120 SEMSLDII 127
SE+S D +
Sbjct: 125 SEVSYDSV 132
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin
Length = 137
Score = 105 bits (263), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 50/125 (40%), Positives = 82/125 (65%), Gaps = 2/125 (1%)
Query: 3 VHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAV 62
V EC F ELK ++ R++VFK+++ ++ VE+ S ++ F LP +CR+A+
Sbjct: 8 VSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAI 66
Query: 63 FDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEM 122
+DF+F E V ++KI FI+W+PD + ++SKMVY+SSKD +R GI ++QATD SE+
Sbjct: 67 YDFEFNLGEGV-RNKIIFISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEV 125
Query: 123 SLDII 127
+ + +
Sbjct: 126 AYETV 130
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma
Gondii (Tgadf)
Length = 139
Score = 77.8 bits (190), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 72/124 (58%), Gaps = 14/124 (11%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
M V + C +F ELK ++ ++IVFKI+ ++ VE+ G A ++F +LPA++CR
Sbjct: 26 MGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGKGNA--DEFRGALPANDCRF 81
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDG-IHVELQATDP 119
V+D +KI F+ W PD + V+ +M YASSKD ++LDG V L+A +
Sbjct: 82 GVYDCG---------NKIQFVLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEM 132
Query: 120 SEMS 123
+++
Sbjct: 133 GDLA 136
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin
pdb|1Q8X|A Chain A, Nmr Structure Of Human Cofilin
pdb|3J0S|M Chain M, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|O Chain O, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|N Chain N, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|Q Chain Q, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|P Chain P, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|S Chain S, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|R Chain R, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|U Chain U, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|T Chain T, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|W Chain W, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|V Chain V, Remodeling Of Actin Filaments By Adf Cofilin Proteins
pdb|3J0S|X Chain X, Remodeling Of Actin Filaments By Adf Cofilin Proteins
Length = 166
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 60/92 (65%), Gaps = 2/92 (2%)
Query: 27 IDEKIQQVTVERVG-SPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAP 85
I E+ +++ V VG + Y F K LP +CR+A++D + T E+ +K + FI WAP
Sbjct: 48 ILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAP 106
Query: 86 DASRVRSKMVYASSKDRFKRELDGIHVELQAT 117
+++ ++SKM+YASSKD K++L GI ELQA
Sbjct: 107 ESAPLKSKMIYASSKDAIKKKLTGIKHELQAN 138
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
pdb|2XFA|B Chain B, Crystal Structure Of Plasmodium Berghei Actin
Depolymerization Factor 2
Length = 148
Score = 73.9 bits (180), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 67/121 (55%), Gaps = 7/121 (5%)
Query: 3 VHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVE------RVGSPQASYEDFTKSLPAD 56
V DEC +F LK K +++I++KI E ++++ V+ + S +L
Sbjct: 12 VSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNT 70
Query: 57 ECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQA 116
ECR+ + D T E V + +I+FI W+P S+ + KM+YA+SK+ R+++GI L+
Sbjct: 71 ECRYIIADMPIPTPEGVLRDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEI 130
Query: 117 T 117
T
Sbjct: 131 T 131
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin
Length = 166
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/106 (38%), Positives = 65/106 (61%), Gaps = 7/106 (6%)
Query: 27 IDEKIQQVTVERVG-SPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAP 85
I E+ +Q+ V +G + + Y F K LP ++CR+A++D + T E+ +K + FI WAP
Sbjct: 48 IVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAP 106
Query: 86 DASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131
+++ ++SKM+YASSKD K++ GI E Q LD IK R+
Sbjct: 107 ESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure
pdb|1AK7|A Chain A, Destrin, Nmr, 20 Structures
Length = 174
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 61/98 (62%), Gaps = 2/98 (2%)
Query: 27 IDEKIQQVTVERVG-SPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAP 85
I E+ +++ V VG + ++ F LP +CR+A++D F T E+ +K ++ F WAP
Sbjct: 57 IVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYALYDASFETKES-RKEELMFFLWAP 115
Query: 86 DASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMS 123
+ + ++SKM+YASSKD K++ GI E QA P +++
Sbjct: 116 ELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLN 153
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI
Length = 144
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 72/127 (56%), Gaps = 4/127 (3%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
++V DEC +L+ K++ I+ +D+K + V+ +G A+++ F +++ + +
Sbjct: 14 VSVADECVTALNDLRHKKSRYVIMHIVDQK--SIAVKTIGERGANFDQFIEAIDKNVPCY 71
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
A FDF++TT++ + K+ I+W PD+ R+KM+Y+SS+D G +QA D S
Sbjct: 72 AAFDFEYTTNDG-PRDKLILISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDAS 129
Query: 121 EMSLDII 127
+ + I
Sbjct: 130 GLDFEEI 136
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
pdb|1M4J|B Chain B, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse
Twinfilin Isoform-1
Length = 142
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 2/98 (2%)
Query: 18 RNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKS--LPADECRHAVFDFDFTTSENVQK 75
RN ++ + KI + +Q+ V P S+E S LP E + + S+N Q
Sbjct: 21 RNGKYRLLKISIENEQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQG 80
Query: 76 SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVE 113
+ FIAW+PD S VR KM+YA+++ K+E G H++
Sbjct: 81 YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIK 118
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA
DONOVANI
Length = 144
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 56/105 (53%), Gaps = 2/105 (1%)
Query: 18 RNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSK 77
+ R+++ I +++ V VG +Y D + ++ + FDF++ + + ++ K
Sbjct: 22 KKSRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAGS-KREK 80
Query: 78 IFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEM 122
+ I W PD +R R KM+Y++S+D +G ++ +QA D S +
Sbjct: 81 LILIQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGL 124
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 134
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 1 MAVHDECKLKFLELKAKRNH-RFIVFKIDEKIQQVTVERVGSPQASY-EDFTKS-LPADE 57
M +H +LK KA+ R I I++ +Q+ + P + +D+ ++ LP +
Sbjct: 2 MGIHATEELKEFFAKARAGSVRLIKVVIED--EQLVLGASQEPVGRWDQDYDRAVLPLLD 59
Query: 58 CRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV--ELQ 115
+ + S+N Q + F+AW+PD S VR KM+YA+++ K+E G H+ EL
Sbjct: 60 AQQPCYLLYRLDSQNAQGFEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELF 119
Query: 116 ATDPSEMS 123
T ++S
Sbjct: 120 GTVKDDLS 127
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor
Length = 124
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 3 VHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPAD---ECR 59
V+D C +F +K ++ +I+F I ++ + G+ + + +S+ + +C
Sbjct: 9 VNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGAS-TTLTELVQSIDKNNEIQCA 65
Query: 60 HAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV 112
+ VFD SKI F +A ++S R +M YASSK ++++G++V
Sbjct: 66 YVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 109
>pdb|2XF1|A Chain A, Crystal Structure Of Plasmodium Falciparum Actin
Depolymerization Factor 1
Length = 124
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/114 (25%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 3 VHDECKLKFLELKAKRN-HRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPAD---EC 58
V+D C +F +K ++ +I+F I + + + S + + +S+ + +C
Sbjct: 9 VNDNCVTEFNNMKIRKTCXGWIIFVIQNXCEIIIHSKGAST--TLTELVQSIDKNNEIQC 66
Query: 59 RHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV 112
+ VFD SKI F +A ++S R +M YASSK ++++G++V
Sbjct: 67 AYVVFD---------AVSKIHFFMYARESSNSRDRMTYASSKQAILKKIEGVNV 111
>pdb|1WFS|A Chain A, Solution Structure Of Glia Maturation Factor-Gamma From
Mus Musculus
Length = 151
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 9 LKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFT 68
L+ + + N+ I+ K+D+ Q V +E S E+ LP + R V+ + +
Sbjct: 24 LRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYV 82
Query: 69 TSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV-ELQATD 118
+ + FI +P + +M+YA SK+R + + V E++ TD
Sbjct: 83 HDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 133
>pdb|3L50|A Chain A, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
pdb|3L50|B Chain B, The Crystal Structure Of Human Glia Maturation Factor,
Gamma (Gmfg)
Length = 136
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 2/112 (1%)
Query: 8 KLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDF 67
KL+ + + ++ I+ K+D+ Q V +E S E+ LP + R V+ + +
Sbjct: 13 KLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQ-NISPEELKMELPERQPRFVVYSYKY 71
Query: 68 TTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV-ELQATD 118
+ + FI +P + +M+YA SK+R + + V E++ TD
Sbjct: 72 VHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 123
>pdb|1VKK|A Chain A, Crystal Structure Of Glia Maturation Factor-Gamma (Gmfg)
From Mus Musculus At 1.50 A Resolution
Length = 154
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 2/111 (1%)
Query: 9 LKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFT 68
L+ + + N+ I+ K+D+ Q V +E S E+ LP + R V+ + +
Sbjct: 30 LRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYV 88
Query: 69 TSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV-ELQATD 118
+ + FI +P + +M+YA SK+R + + V E++ TD
Sbjct: 89 HDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKVFEIRTTD 139
>pdb|2W0I|A Chain A, Structure Of C-Terminal Actin Depolymerizing Factor
Homology (Adf-H) Domain Of Human Twinfilin-2
Length = 135
Score = 32.7 bits (73), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/103 (22%), Positives = 46/103 (44%), Gaps = 3/103 (2%)
Query: 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
M + E + +LK K + +I K+D +++ T+E V + +P D R+
Sbjct: 2 MPLQPEAQRALQQLKQKMVN-YIQMKLD--LERETIELVHTEPTDVAQLPSRVPRDAARY 58
Query: 61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRF 103
F + T + +S +F + ++ +M+Y+S K R
Sbjct: 59 HFFLYKHTHEGDPLESVVFIYSMPGYKCSIKERMLYSSCKSRL 101
>pdb|1RU4|A Chain A, Crystal Structure Of Pectate Lyase Pel9a
Length = 400
Score = 28.9 bits (63), Expect = 0.92, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 55 ADECRHAVFDFDFTTSENVQKSKIFFI 81
A C AVFDF F S+ VQ S F++
Sbjct: 86 AANCGRAVFDFSFPDSQWVQASYGFYV 112
>pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
(Tm0262) From Thermotoga Maritima At 2.00 A Resolution
Length = 378
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 93 KMVYASSKDRFKRELDGIHVELQ 115
K+++A++KD F R L+G+ EL
Sbjct: 152 KVIFAAAKDEFMRNLNGVFWELH 174
>pdb|4GIJ|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIJ|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Sulfate
pdb|4GIK|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIK|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR R5p Adduct
pdb|4GIL|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
pdb|4GIL|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
GlycosidaseLINEAR Pseudouridine 5'-Phosphate Adduct
Length = 335
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 36 VERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAW 83
+E G P Y+ TK+LPA CR + FD + ++ + W
Sbjct: 201 LETFGVPLIGYQ--TKALPAFFCRTSPFDVSIRLDSASEIARAMVVKW 246
>pdb|4GIM|A Chain A, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|B Chain B, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
pdb|4GIM|C Chain C, Crystal Structure Of Pseudouridine Monophosphate
Glycosidase Complexed With Pseudouridine 5'-Phosphate
Length = 335
Score = 27.3 bits (59), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 36 VERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAW 83
+E G P Y+ TK+LPA CR + FD + ++ + W
Sbjct: 201 LETFGVPLIGYQ--TKALPAFFCRTSPFDVSIRLDSASEIARAMVVKW 246
>pdb|4EYU|A Chain A, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EYU|B Chain B, The Free Structure Of The Mouse C-Terminal Domain Of Kdm6b
pdb|4EZ4|A Chain A, Free Kdm6b Structure
pdb|4EZ4|B Chain B, Free Kdm6b Structure
pdb|4EZH|A Chain A, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
pdb|4EZH|B Chain B, The Crystal Structure Of Kdm6b Bound With H3k27me3 Peptide
Length = 486
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 30 KIQQVTVERVGSPQASYEDFTKSLPA---DECRHAVFDFDFTTSEN 72
++Q+ ++ R G + +Y+ K PA +EC VF+ F TSEN
Sbjct: 391 QVQRESLVRAGK-KIAYQGRVKDEPAYYCNECDVEVFNILFVTSEN 435
>pdb|4ASK|A Chain A, Crystal Structure Of Jmjd3 With Gsk-J1
pdb|4ASK|B Chain B, Crystal Structure Of Jmjd3 With Gsk-J1
Length = 510
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 30 KIQQVTVERVGSPQASYEDFTKSLPA---DECRHAVFDFDFTTSEN 72
++Q+ ++ R G + +Y+ K PA +EC VF+ F TSEN
Sbjct: 409 QVQRESLVRAGK-KIAYQGRVKDEPAYYCNECDVEVFNILFVTSEN 453
>pdb|2XUE|A Chain A, Crystal Structure Of Jmjd3
pdb|2XUE|B Chain B, Crystal Structure Of Jmjd3
Length = 509
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 30 KIQQVTVERVGSPQASYEDFTKSLPA---DECRHAVFDFDFTTSEN 72
++Q+ ++ R G + +Y+ K PA +EC VF+ F TSEN
Sbjct: 408 QVQRESLVRAGK-KIAYQGRVKDEPAYYCNECDVEVFNILFVTSEN 452
>pdb|1MAI|A Chain A, Structure Of The Pleckstrin Homology Domain From
Phospholipase C Delta In Complex With Inositol
Trisphosphate
Length = 131
Score = 25.8 bits (55), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 3 VHDECKLKFLE-LKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHA 61
+ ++CK + E K R+ +F I E IQ+V R+G E F + +P D C
Sbjct: 35 LQEDCKTIWQESRKVMRSPESQLFSI-EDIQEV---RMGHRTEGLEKFARDIPEDRCFSI 90
Query: 62 VF 63
VF
Sbjct: 91 VF 92
>pdb|1HQZ|1 Chain 1, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|2 Chain 2, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|3 Chain 3, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|4 Chain 4, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|5 Chain 5, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|6 Chain 6, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|7 Chain 7, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|8 Chain 8, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
pdb|1HQZ|9 Chain 9, Cofilin Homology Domain Of A Yeast Actin-Binding Protein
Abp1p
Length = 141
Score = 25.4 bits (54), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 77 KIFFIAWAPDASRVRSKMVYASSKDRFKREL-DGIHVELQATDPSEM 122
KI I W PD++ ++++ +A++ L G HV++ A D ++
Sbjct: 80 KIIIIGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDL 126
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,516,542
Number of Sequences: 62578
Number of extensions: 119345
Number of successful extensions: 282
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 243
Number of HSP's gapped (non-prelim): 32
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)