Query 040070
Match_columns 132
No_of_seqs 132 out of 1031
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 04:49:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03216 actin depolymerizing 100.0 1.6E-45 3.5E-50 256.8 16.1 132 1-132 10-141 (141)
2 KOG1735 Actin depolymerizing f 100.0 1.1E-41 2.5E-46 235.0 10.8 131 1-131 5-140 (146)
3 PF00241 Cofilin_ADF: Cofilin/ 100.0 3.3E-40 7.1E-45 225.7 14.4 127 5-132 1-127 (127)
4 cd00013 ADF Actin depolymerisa 100.0 5.3E-40 1.1E-44 225.9 15.1 130 1-131 3-132 (132)
5 smart00102 ADF Actin depolymer 100.0 5.4E-39 1.2E-43 220.2 15.3 127 5-132 1-127 (127)
6 PTZ00152 cofilin/actin-depolym 100.0 1.5E-35 3.4E-40 201.5 8.1 111 1-123 5-119 (122)
7 KOG1736 Glia maturation factor 99.9 1.2E-26 2.6E-31 155.1 12.2 130 2-132 9-141 (143)
8 KOG1747 Protein tyrosine kinas 99.9 3E-25 6.5E-30 168.1 11.8 129 1-132 177-311 (342)
9 KOG1747 Protein tyrosine kinas 99.9 2.4E-24 5.1E-29 163.3 9.7 122 1-131 7-135 (342)
10 KOG3655 Drebrins and related a 99.7 3.6E-17 7.9E-22 130.4 11.6 122 5-131 11-133 (484)
11 KOG2313 Stress-induced protein 53.6 20 0.00044 23.4 3.1 31 87-121 66-99 (100)
12 KOG4037 Photoreceptor synaptic 37.6 1.2E+02 0.0025 22.3 5.2 47 20-66 86-136 (240)
13 PRK11470 hypothetical protein; 32.3 1.8E+02 0.0039 21.5 5.6 45 19-66 36-82 (200)
14 KOG2862 Alanine-glyoxylate ami 29.8 81 0.0018 25.4 3.6 46 2-53 43-88 (385)
15 PRK04968 SecY interacting prot 29.3 1.1E+02 0.0024 22.3 4.0 33 23-55 140-177 (181)
16 PF12663 DUF3788: Protein of u 29.1 71 0.0015 21.8 2.9 29 2-30 91-119 (133)
17 PF11663 Toxin_YhaV: Toxin wit 28.6 77 0.0017 22.1 3.0 27 59-92 80-107 (140)
18 PTZ00248 eukaryotic translatio 26.6 2.6E+02 0.0056 22.2 6.0 52 14-65 64-115 (319)
19 COG4075 Uncharacterized conser 26.5 1.4E+02 0.0031 19.6 3.8 27 3-29 74-102 (110)
20 KOG0444 Cytoskeletal regulator 25.9 1.1E+02 0.0023 27.5 3.9 48 58-108 528-575 (1255)
21 PF03400 DDE_Tnp_IS1: IS1 tran 25.6 1.6E+02 0.0035 20.1 4.2 46 15-60 15-61 (131)
22 COG1753 Predicted antotoxin, c 24.6 62 0.0013 20.0 1.7 18 1-18 6-23 (74)
23 PF07348 Syd: Syd protein (SUK 23.5 93 0.002 22.5 2.8 31 24-54 140-175 (176)
24 PF00106 adh_short: short chai 21.9 1.3E+02 0.0028 20.1 3.2 33 75-107 127-159 (167)
25 PF14307 Glyco_tran_WbsX: Glyc 21.9 2.8E+02 0.0062 21.8 5.5 70 32-112 123-194 (345)
26 PF13645 YkuD_2: L,D-transpept 21.0 1.4E+02 0.0031 21.5 3.4 31 53-91 44-74 (176)
27 PF10678 DUF2492: Protein of u 20.8 2.2E+02 0.0048 17.8 3.7 31 100-131 26-56 (78)
28 TIGR03853 matur_matur probable 20.8 2.1E+02 0.0046 17.8 3.6 30 101-131 25-54 (77)
29 PF02697 DUF217: Uncharacteriz 20.5 80 0.0017 19.3 1.7 16 1-16 4-19 (71)
30 PF01068 DNA_ligase_A_M: ATP d 20.2 2.6E+02 0.0056 19.6 4.6 59 5-68 56-123 (202)
No 1
>PLN03216 actin depolymerizing factor; Provisional
Probab=100.00 E-value=1.6e-45 Score=256.78 Aligned_cols=132 Identities=63% Similarity=1.067 Sum_probs=125.3
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|+++++|+++|++|+.++.+|||+|+|++++++|+|++++..+.+|++|.+.||+++|||++||+++++++|+.+++++|
T Consensus 10 i~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvF 89 (141)
T PLN03216 10 MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFF 89 (141)
T ss_pred CeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEE
Confidence 67999999999999998878999999999888999998765567899999999999999999999999989999999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||++||+|.||+|||||++|++.|+|++.+||++|.+||+++.+.++|.
T Consensus 90 I~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~ 141 (141)
T PLN03216 90 IAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK 141 (141)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999874
No 2
>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton]
Probab=100.00 E-value=1.1e-41 Score=235.03 Aligned_cols=131 Identities=61% Similarity=0.987 Sum_probs=124.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCC---CCCceeEEEeeeeecCC--Ccee
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLP---ADECRHAVFDFDFTTSE--NVQK 75 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~---~~~~rY~~~~~~~~~~~--~~~~ 75 (132)
|.|+|+|+.+|++|+.++.+|||+|+|++++..|++++.|+++.+|++|...|| .++|||++||++|++.. +...
T Consensus 5 v~Vsde~~~~F~elk~kk~~r~ivF~i~~~~~~i~ve~~g~~~~s~~~f~~~l~~~~~~dCrYA~yDf~f~t~~~g~~~~ 84 (146)
T KOG1735|consen 5 VAVSDECKKVFNELKVKKRKRYVVFKISEDKKQIIVEKGGSPGASYDDFVASLPKMPEKDCRYALYDFEFETKESGNCKK 84 (146)
T ss_pred eEecHHHHHHHHHHHhhcceeEEEEEeccccccccccccCCCCCchhhhHHHhccCCccccceEEecceEEeecccccee
Confidence 579999999999999999999999999999899999999999999999999999 99999999999999844 3478
Q ss_pred ecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 76 SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 76 ~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+|++||.|||++||+|+||+|||||++|+++|.|+++++|+||++|+.++.|+++|
T Consensus 85 ~Ki~f~~wsPd~a~vKsKMiYaSSkDalkr~L~Gi~~elQatd~~E~~~~~~~ekl 140 (146)
T KOG1735|consen 85 SKIFFIAWSPDTAPVKSKMIYASSKDALKRELTGIQHELQATDPSEMSLDSLAEKL 140 (146)
T ss_pred eeEEEEEECCCccchhhheeehhhHHHHhhhccCceeeeecCChHHhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999887
No 3
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma. ADF/cofilins are small actin-binding proteins composed of a single ADF-H domain. They bind both actin-monomers and filaments and promote rapid filament turnover in cells by depolymerising/fragmenting actin filaments. ADF/cofilins bind ADP-actin with higher affinity than ATP-actin and inhibit the spontaneous nucleotide exchange on actin monomers Twinfilins, which are actin monomer-binding proteins that are composed of two ADF-H domains Abp1/Drebrins, which are relatively large proteins composed of an N-terminal ADF-H domain followed by a variable region and a C-terminal SH3 domain. Abp1/Drebrins interact only with actin filaments and do not promote filament depolymerisation or fragmentation Although these proteins are biochemically distinct and play different roles in actin dynamics, they all appear to use the ADF-H domain for their interactions with actin. The ADF-H domain consists of a six-stranded mixed beta-sheet in which the four central strands (beta2-beta5) are anti-parallel and the two edge strands (beta1 and beta6) run parallel with the neighbouring strands. The sheet is surrounded by two alpha-helices on each side [, , ].; GO: 0003779 actin binding, 0005622 intracellular; PDB: 1AK6_A 1AK7_A 1V6F_A 2L72_A 1CFY_A 1QPV_A 1COF_A 1TVJ_A 1X67_A 3L50_A ....
Probab=100.00 E-value=3.3e-40 Score=225.74 Aligned_cols=127 Identities=43% Similarity=0.798 Sum_probs=119.1
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEc
Q 040070 5 DECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWA 84 (132)
Q Consensus 5 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~ 84 (132)
|||+++|++|+.+++++|++|+|++++++|+|+++|+...+|++|.+.||+++|||++||+.+++. |+.+++++||+||
T Consensus 1 ~e~~~~~~~~~~~~~~~~i~~~i~~~~~~i~v~~~g~~~~~~~el~~~l~~~~p~y~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T PF00241_consen 1 DECKAAFQELKSKKSTRWIIFKIDDEKEEIVVEKSGSEGGSFDELLSHLPDDEPRYILYRFEYTHK-GSRRSKLVFIYWC 79 (127)
T ss_dssp HHHHHHHHHHHTTTSCSEEEEEEETTSTEEEEEEEEEESSHHHHHHHCSCTTSEEEEEEEEEEEET-TSEEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCCceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhcccCCcEEEEEEeeeccc-CCCCceEEEEEEe
Confidence 799999999999977999999999998999999987667899999999999999999999999876 6789999999999
Q ss_pred CCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 85 PDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 85 P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|++||+|+||+|||++++|++.|+|++.+++++|++||+++.|.++|.
T Consensus 80 P~~~~vk~km~yas~k~~l~~~l~~~~~~~~~~d~~dl~~~~i~~kl~ 127 (127)
T PF00241_consen 80 PDNAPVKEKMLYASSKASLKKKLGGIHIEIQASDPDDLSEEEILEKLK 127 (127)
T ss_dssp STTS-HHHHHHHHHHHHHHHHHCTTEEEEEEESSGGGGSHHHHHHHH-
T ss_pred cCCccHHHhhhhHHhHHHHHHHhCCceEEEEECChHHCCHHHHHHhhC
Confidence 999999999999999999999999999999999999999999999874
No 4
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments.
Probab=100.00 E-value=5.3e-40 Score=225.93 Aligned_cols=130 Identities=48% Similarity=0.862 Sum_probs=121.6
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|+++++|.+||++|+.+++++|++|+|+.++++|++++++....++++|.+.||+++|||++||+++.+. |+.+++++|
T Consensus 3 i~i~~e~~~a~~~~~~~~~~~~vi~~i~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~y~~~~~~~~~~-~~~~~k~vf 81 (132)
T cd00013 3 IKVSDECKEAFEELKSGKKTRWIIFKIDDDKKEIVVEKTGEGGESFDEFVEELPEDECRYALYDYDFTTE-GSKKSKIVF 81 (132)
T ss_pred ceECHHHHHHHHHHHhCCceeEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCcCCceEEEEEecccCC-CccccCEEE
Confidence 5789999999999998867999999999988999999887644689999999999999999999998766 788999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++||+|.||+|||+|.+|++.++|++..+++++.+||+++.|.+++
T Consensus 82 I~w~P~~a~~k~km~yas~k~~l~~~l~~~~~~i~a~~~~dl~~~~i~~kl 132 (132)
T cd00013 82 IYWSPETAPVKSKMLYASSKAALKRELVGIQVEVQATDPDELDEEALLEKL 132 (132)
T ss_pred EEECCCCCChhhhhhhHHHHHHHHHhcCCceEEEEECChhhcCHHHHHhhC
Confidence 999999999999999999999999999999999999999999999999875
No 5
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains. Severs actin filaments and binds to actin monomers.
Probab=100.00 E-value=5.4e-39 Score=220.15 Aligned_cols=127 Identities=50% Similarity=0.878 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEc
Q 040070 5 DECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWA 84 (132)
Q Consensus 5 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~ 84 (132)
++|.++|++|+.+++.+|++|+|+.++++|+|+++|.+..+|++|.+.||+++|||++||+++.++ ++.+++++||+||
T Consensus 1 ~~~~~~~~~~~~~~~~~~vi~~i~~~~~~i~v~~~~~~~~~~~el~~~l~~~~~ry~~~~~~~~~~-~~~~~k~vfI~w~ 79 (127)
T smart00102 1 EDCKEAFNELKKKRKHSAIIFKIDKDNEEIVVEEVGSTEDSYDEFVEELPEDECRYALYDYKFTTE-ESKKSKIVFIFWS 79 (127)
T ss_pred ChHHHHHHHHHcCCCceEEEEEEecCCCEEEEEecCCCCCCHHHHHHhCCccCceEEEEEeecccC-CCccccEEEEEEC
Confidence 479999999999877999999999998999999887666789999999999999999999998765 4679999999999
Q ss_pred CCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 85 PDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 85 P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|++||+|.||+|||++.+|++.|+|++..+++++.+||+++.|.++++
T Consensus 80 P~~a~~~~km~yas~k~~l~~~l~~~~~~i~~~~~~el~~~~i~~kl~ 127 (127)
T smart00102 80 PDGAPVKSKMLYASSKDTLKKELGGIQVEVQATDEDDLDEEALKEKLK 127 (127)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCceEEEEECChhhcCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999874
No 6
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional
Probab=100.00 E-value=1.5e-35 Score=201.54 Aligned_cols=111 Identities=26% Similarity=0.574 Sum_probs=98.6
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCC---ceeEEEeeeeecCCCceeec
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADE---CRHAVFDFDFTTSENVQKSK 77 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---~rY~~~~~~~~~~~~~~~~k 77 (132)
|++++||.++|++|+.++.+|||+|+|++ ++|+|++.+. ..+|++|++.||+++ |||++|+++ ++
T Consensus 5 i~v~de~~~~f~~lk~~k~~r~iifkI~~--~~Ivv~~~~~-~~~~~e~~~~L~~~~~~~crY~vyd~~---------~k 72 (122)
T PTZ00152 5 IRVNDNCVTEFNNMKIRKTCRWIIFVIEN--CEIIIHSKGA-TTTLTELVGSIDKNDKIQCAYVVFDAV---------NK 72 (122)
T ss_pred cCcCHHHHHHHHHHhcCCcceEEEEEEcC--cEEEEEecCC-CCCHHHHHHhccccCCCCceEEEEccC---------CC
Confidence 68999999999999998889999999975 7899998875 468999999999988 999999873 46
Q ss_pred EEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeE-EEEEcCCCCCC
Q 040070 78 IFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV-ELQATDPSEMS 123 (132)
Q Consensus 78 ~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~-~i~~~d~~dl~ 123 (132)
++||+|||++||+|.||+|||||++|++.|.|++. ..|+++.+||.
T Consensus 73 lvFI~w~Pd~a~ik~KMlYASsK~~l~~~l~Gi~~~~~~~~~~~~~~ 119 (122)
T PTZ00152 73 IHFFMYARESSNSRDRMTYASSKQALLKKIEGVNVLTSVIESAQDVA 119 (122)
T ss_pred EEEEEECCCCCChHHhhhhHhHHHHHHHHhcchhHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999863 55777777663
No 7
>KOG1736 consensus Glia maturation factor beta [Extracellular structures]
Probab=99.95 E-value=1.2e-26 Score=155.14 Aligned_cols=130 Identities=16% Similarity=0.370 Sum_probs=118.0
Q ss_pred ccCHHHHHHHHHHhhc-C--CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecE
Q 040070 2 AVHDECKLKFLELKAK-R--NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKI 78 (132)
Q Consensus 2 ~vs~e~~~a~~~lk~~-~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~ 78 (132)
.|+++..+.++.+|.+ + ...++|+||+.+...|+++...-...+.+++.+.||+.+|||++|.|+++++||+...++
T Consensus 9 ~i~~et~~ki~kFR~r~k~t~~~A~imKidK~~~eiV~d~Eeld~is~eEladeLpe~~PRFvl~sYpt~t~DGr~stPL 88 (143)
T KOG1736|consen 9 KIGTETREKIRKFRFRTKETSNAAIIMKIDKDSYEIVLDEEELDEISPEELADELPERQPRFVLYSYPTTTDDGRVSTPL 88 (143)
T ss_pred EeCHHHHHHHHHhhhhhccccceeEEEEecCCceEeecCHHHhccCChHHHHhhccccCCcEEEEECcccccCCcccccE
Confidence 4789999999999875 2 588999999999899999843334578889999999999999999999999999999999
Q ss_pred EEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 79 FFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 79 vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
+||||.|.+++...+|+||++|.-+.+.. ++++.+++++-+|++++++.++|+
T Consensus 89 ~~Iyw~P~~~~~e~~MmYAgak~~~~~~~-~~~KvfEir~tdD~t~e~l~E~L~ 141 (143)
T KOG1736|consen 89 CFIYWSPVGCKPEQQMMYAGAKNMLVQTA-ELTKVFEIRSTDDLTEEWLREKLE 141 (143)
T ss_pred EEEEecCccCCHHHHHHHHHHHHHHHHHh-hheEEEEecccccccHHHHHHHhh
Confidence 99999999999999999999999999998 678899999999999999999874
No 8
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.93 E-value=3e-25 Score=168.15 Aligned_cols=129 Identities=21% Similarity=0.367 Sum_probs=114.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
++++++..+|+++|+.++ ++||+|.|+..+|+|.+.++. ...+.+|+.+.+|.+.|||.+|.|.+++ +|.....++|
T Consensus 177 ~pi~~~a~kAl~~L~~~~-~n~vql~ID~~nE~I~l~~t~-~~~e~sdL~s~vP~d~prY~ff~~~ht~-eGD~~es~~F 253 (342)
T KOG1747|consen 177 FPIDRNAEKALQDLKSSK-LNYVQLSIDLENETIQLSQTD-TCTEPSDLPSRVPRDGPRYHFFLFKHTH-EGDPLESIVF 253 (342)
T ss_pred ecccHHHHHHHHHHHhhc-cceEEEEeccccceeeeeccC-CCCChHHhhhhcCCCCCceEEEeccccc-CCCCceeEEE
Confidence 368999999999999988 999999999888999998864 3478999999999999999999999875 5667889999
Q ss_pred EEEcCC-CCChhhhhHhHhhHHHHHhhcC---Ce--eEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPD-ASRVRSKMVYASSKDRFKRELD---GI--HVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~-~a~vk~KMlyassk~~l~~~l~---g~--~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
||.||. +|+||+||+|||||..|...+. |+ ..+||++|.+|||++.+.+.++
T Consensus 254 IYS~P~~~~sVKeRMlYSScK~~fLd~~k~~~gi~i~kKiEi~d~~eLte~~L~e~~H 311 (342)
T KOG1747|consen 254 IYSMPGYGCSVKERMLYSSCKSGFLDSLKNDLGIVISKKIEIDDGAELTEKFLYEELH 311 (342)
T ss_pred EEECCCCCcchhhhhHhhhcchhHHHHHHHhcCeeEEEEEeeCcHHHhhHHHHHHhhC
Confidence 999999 9999999999999999877665 43 4699999999999998877654
No 9
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures]
Probab=99.91 E-value=2.4e-24 Score=163.30 Aligned_cols=122 Identities=28% Similarity=0.426 Sum_probs=100.3
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCC----CCChHHHhhcC-CCCCceeEEEeeeeecCCCcee
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSP----QASYEDFTKSL-PADECRHAVFDFDFTTSENVQK 75 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~----~~~~~~~~~~L-~~~~~rY~~~~~~~~~~~~~~~ 75 (132)
|..++++.+.|++-+.++ +|.+...|++ +++.+..+..+ ..+|+.++..| .+.+|||++|+++. ..
T Consensus 7 I~A~e~l~~~l~~~~~~k-~R~ikIvI~n--Eql~~~s~~e~~~~w~~D~~~~v~~ll~~~ePcyILyrlds------~~ 77 (342)
T KOG1747|consen 7 IRATEALKKFLNEAKNGK-LRLIKIVIEN--EQLSPGSTSEPSTSWERDYDKLVLPLLDAREPCYILYRLDS------KN 77 (342)
T ss_pred cchHHHHHHHHHhcccCc-eEEEEEEEec--ccccCCccccccccHHHHHHHHHHHhhccCCceEEEEeecC------CC
Confidence 456778888899888887 8999888877 58887655433 45677777665 46899999999973 34
Q ss_pred ecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCee--EEEEEcCCCCCCHHHHhhhh
Q 040070 76 SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIH--VELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 76 ~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~--~~i~~~d~~dl~~~~i~~~~ 131 (132)
.+|+||.|+||+||||+||||||||++|+++++|.+ .+.++++++||+...+.+.+
T Consensus 78 ~~w~lIs~vPD~apVR~KMLYAsTrATlkrefG~~~i~ee~~~T~~~dl~~~~~~k~l 135 (342)
T KOG1747|consen 78 AEWLLISWVPDNAPVRQKMLYASTRATLKREFGGAYITEELFATDLEDLTLLGYFKSL 135 (342)
T ss_pred ccEEEEEECCCCChHHHHHHHHHHHHHHHHHhccceeccccccCCHHHhhhHHHHHhh
Confidence 499999999999999999999999999999998744 59999999999999887543
No 10
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton]
Probab=99.73 E-value=3.6e-17 Score=130.40 Aligned_cols=122 Identities=18% Similarity=0.297 Sum_probs=109.3
Q ss_pred HHHHHHHHHHhhcC-CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEE
Q 040070 5 DECKLKFLELKAKR-NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAW 83 (132)
Q Consensus 5 ~e~~~a~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w 83 (132)
.+|.++|..+..+. ...|+||+++++...+.+.. .....+++|.+.+......|+++++. +.++...|+|||+|
T Consensus 11 aei~aaY~~v~~d~~dt~WaiF~Yeg~s~~~~~~~--s~~~~~~e~~~df~~~kv~yg~~rv~---D~~s~l~KfvLI~W 85 (484)
T KOG3655|consen 11 AEIRAAYERVVDDSSDTDWALFTYEGNSNDLKVAG--SGEGGLEEFLGDFDSGKVMYGFCRVK---DPMSGLPKFVLINW 85 (484)
T ss_pred HHHHHHHHHhhccCCCceeEEEeecCCccceeeec--cccccHHHHhhhcccCceeEEEEEec---CcccCCcceEEEEe
Confidence 57999999998765 69999999998655555544 44578999999999999999999986 55778999999999
Q ss_pred cCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 84 APDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 84 ~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|++++|+-.|-.+|+.++.+++.|+|++++|++++.+||+.+.|+++|
T Consensus 86 ~GE~vp~~Rka~~ath~a~v~~~lkg~hV~i~Ar~e~Dld~d~i~~~l 133 (484)
T KOG3655|consen 86 IGEGVPVLRKAKCATHKALVKNFLKGFHVEINARSEEDLDEDAIREKL 133 (484)
T ss_pred cCCccHHHhhhhhcchHHHHHHHhhcceEEEeccchhhcCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887
No 11
>KOG2313 consensus Stress-induced protein UVI31+ [Signal transduction mechanisms]
Probab=53.59 E-value=20 Score=23.42 Aligned_cols=31 Identities=39% Similarity=0.696 Sum_probs=22.4
Q ss_pred CCChhhhhHhHhhHHHHHhhcCC--ee-EEEEEcCCCC
Q 040070 87 ASRVRSKMVYASSKDRFKRELDG--IH-VELQATDPSE 121 (132)
Q Consensus 87 ~a~vk~KMlyassk~~l~~~l~g--~~-~~i~~~d~~d 121 (132)
+..-|.||+| ..|+.+|.+ ++ ..|.+..|+|
T Consensus 66 s~v~RHRlVy----~~L~eEl~~~gvHAL~i~aKTP~e 99 (100)
T KOG2313|consen 66 SLVKRHRLVY----KALKEELAGTGVHALSIMAKTPSE 99 (100)
T ss_pred cHHHHHHHHH----HHHHHHhhccceeEEEeeccCCCC
Confidence 5567999999 556666654 66 5888877776
No 12
>KOG4037 consensus Photoreceptor synaptic vesicle protein HRG4/UNC-119 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=37.59 E-value=1.2e+02 Score=22.31 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=27.7
Q ss_pred cEEEEEEEe-CCCcEEEEeecCCCCC---ChHHHhhcCCCCCceeEEEeee
Q 040070 20 HRFIVFKID-EKIQQVTVERVGSPQA---SYEDFTKSLPADECRHAVFDFD 66 (132)
Q Consensus 20 ~~~ii~~i~-~~~~~i~v~~~~~~~~---~~~~~~~~L~~~~~rY~~~~~~ 66 (132)
+.+..|+|. .+.+.|..+-..++.. .+---.+.|.++..||+=|.|.
T Consensus 86 IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFt 136 (240)
T KOG4037|consen 86 IDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFT 136 (240)
T ss_pred eeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeec
Confidence 678888884 3445554432222222 2222335678889999999885
No 13
>PRK11470 hypothetical protein; Provisional
Probab=32.29 E-value=1.8e+02 Score=21.48 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=33.4
Q ss_pred CcEEEEEEEeCCCcEEEEeecCC--CCCChHHHhhcCCCCCceeEEEeee
Q 040070 19 NHRFIVFKIDEKIQQVTVERVGS--PQASYEDFTKSLPADECRHAVFDFD 66 (132)
Q Consensus 19 ~~~~ii~~i~~~~~~i~v~~~~~--~~~~~~~~~~~L~~~~~rY~~~~~~ 66 (132)
+|-.||+..+++ +-++++.... ...++++|++. ....+|+++|+.
T Consensus 36 sHvGII~~~~~~-~~~VlEA~~~~vr~TpLs~fi~r--~~~g~i~v~Rl~ 82 (200)
T PRK11470 36 NHVGIIIGHNGE-DFLVAESRVPLSTVTTLSRFIKR--SANQRYAIKRLD 82 (200)
T ss_pred ceEEEEEEEcCC-ceEEEEecCCceEEeEHHHHHhc--CcCceEEEEEec
Confidence 478888888764 6777877643 24678888877 347899999995
No 14
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=29.77 E-value=81 Score=25.36 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=33.3
Q ss_pred ccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcC
Q 040070 2 AVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSL 53 (132)
Q Consensus 2 ~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L 53 (132)
..|||+.+.+++++.+ ++|| |+-.+. .+..+..+| ...|+-++..+
T Consensus 43 h~sPe~~qIm~~v~eg--ikyV-FkT~n~-~tf~isgsG--h~g~E~al~N~ 88 (385)
T KOG2862|consen 43 HMSPEFVQIMDEVLEG--IKYV-FKTANA-QTFVISGSG--HSGWEAALVNL 88 (385)
T ss_pred cCCHHHHHHHHHHHHH--HHHH-hccCCC-ceEEEecCC--cchHHHHHHhh
Confidence 3689999999999985 7786 776554 577776555 46777666554
No 15
>PRK04968 SecY interacting protein Syd; Provisional
Probab=29.33 E-value=1.1e+02 Score=22.25 Aligned_cols=33 Identities=21% Similarity=0.324 Sum_probs=22.8
Q ss_pred EEEEEeCCCcEEEEeecCCC-----CCChHHHhhcCCC
Q 040070 23 IVFKIDEKIQQVTVERVGSP-----QASYEDFTKSLPA 55 (132)
Q Consensus 23 ii~~i~~~~~~i~v~~~~~~-----~~~~~~~~~~L~~ 55 (132)
-+..+++.+.+|.++..|.. ..++.+|++.|.+
T Consensus 140 ~~isv~N~sGeV~lE~~G~~~r~vLA~sL~eFL~~L~P 177 (181)
T PRK04968 140 EVISVCNLSGEVILETLGTRKRTVLAPSLAEFLNQLEP 177 (181)
T ss_pred eEEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCCc
Confidence 34556677778888876643 3578888888864
No 16
>PF12663 DUF3788: Protein of unknown function (DUF3788); InterPro: IPR024265 This family of functionally uncharacterised proteins is found in bacteria and archaea. Proteins in this family are typically between 137 and 149 amino acids in length and may be distantly related to RelE proteins.
Probab=29.11 E-value=71 Score=21.77 Aligned_cols=29 Identities=7% Similarity=0.193 Sum_probs=24.5
Q ss_pred ccCHHHHHHHHHHhhcCCcEEEEEEEeCC
Q 040070 2 AVHDECKLKFLELKAKRNHRFIVFKIDEK 30 (132)
Q Consensus 2 ~vs~e~~~a~~~lk~~~~~~~ii~~i~~~ 30 (132)
.+|+.+++.|++-+..++-+|+.|.+.++
T Consensus 91 ~~s~~~~~~~~~~~~~~~GkWl~~~V~~~ 119 (133)
T PF12663_consen 91 DLSPYVQELYDEAKTYGDGKWLMIEVRSE 119 (133)
T ss_pred hcCHHHHHHHHhCCCCCCCcEEEEEeCCh
Confidence 47899999999998877789999888663
No 17
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=28.65 E-value=77 Score=22.09 Aligned_cols=27 Identities=37% Similarity=0.714 Sum_probs=19.7
Q ss_pred eeE-EEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 59 RHA-VFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~-~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
||= +|+|+ ..+|+|++.|+-|....|.
T Consensus 80 ryRLFFRy~-------s~skiIv~aWvNDe~tlR~ 107 (140)
T PF11663_consen 80 RYRLFFRYD-------SESKIIVYAWVNDEQTLRA 107 (140)
T ss_pred eeeEEEEec-------CccCEEEEEEeCCCcchhh
Confidence 564 45654 3669999999999877664
No 18
>PTZ00248 eukaryotic translation initiation factor 2 subunit 1; Provisional
Probab=26.56 E-value=2.6e+02 Score=22.23 Aligned_cols=52 Identities=10% Similarity=0.281 Sum_probs=39.3
Q ss_pred HhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEee
Q 040070 14 LKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDF 65 (132)
Q Consensus 14 lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~ 65 (132)
++.|......|++++.++..|.+....-...+|+++.+.++...-.......
T Consensus 64 vkvGd~v~vkVl~VD~ekg~IdLS~K~v~~~pw~~~~e~~~~g~~v~~~V~~ 115 (319)
T PTZ00248 64 IRVGRHEVVVVLRVDKEKGYIDLSKKRVSPEDIEACEEKFSKSKKVHSIMRH 115 (319)
T ss_pred cCCCCEEEEEEEEEeCCCCEEEEEeeecccchHHHHHHhCcCCCEEEEEEEE
Confidence 4667778999999998888888865433456899999999877665555544
No 19
>COG4075 Uncharacterized conserved protein, homolog of nitrogen regulatory protein PII [Function unknown]
Probab=26.50 E-value=1.4e+02 Score=19.61 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=13.3
Q ss_pred cCHHHHHHHHHHhhcC--CcEEEEEEEeC
Q 040070 3 VHDECKLKFLELKAKR--NHRFIVFKIDE 29 (132)
Q Consensus 3 vs~e~~~a~~~lk~~~--~~~~ii~~i~~ 29 (132)
|++|+.+...++-..+ +.||-|+.|..
T Consensus 74 V~Ee~vekie~~~~Ekla~eryTIi~ipI 102 (110)
T COG4075 74 VKEEKVEKIEELLKEKLANERYTIIEIPI 102 (110)
T ss_pred cCHHHHHHHHHHHHHHhcCCceEEEEeee
Confidence 3455555555543222 35666666555
No 20
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=25.86 E-value=1.1e+02 Score=27.49 Aligned_cols=48 Identities=8% Similarity=0.063 Sum_probs=37.9
Q ss_pred ceeEEEeeeeecCCCceeecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcC
Q 040070 58 CRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELD 108 (132)
Q Consensus 58 ~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~ 108 (132)
-||++..-.+. .+..-.|-.+||+.+.|+.-.+|--|-+.-.++..|+
T Consensus 528 DcYiVLKT~~d---dsG~L~weIfyWiG~eAtLDK~aCsAiHAVnLRN~Lg 575 (1255)
T KOG0444|consen 528 DCYIVLKTTRD---DSGQLRWEIFYWIGEEATLDKGACSAIHAVNLRNHLG 575 (1255)
T ss_pred cEEEEEEeecc---cccccceeEEEEecccccccchhhhHHHhhhhhhhhC
Confidence 47999876432 2335577788999999999999998888888888885
No 21
>PF03400 DDE_Tnp_IS1: IS1 transposase; InterPro: IPR005063 Transposase proteins are necessary for efficient DNA transposition. This family represents bacterial IS1 transposases []. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.60 E-value=1.6e+02 Score=20.09 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=33.4
Q ss_pred hhcCCcEEEEEEEeCCCcEEEEeecCCC-CCChHHHhhcCCCCCcee
Q 040070 15 KAKRNHRFIVFKIDEKIQQVTVERVGSP-QASYEDFTKSLPADECRH 60 (132)
Q Consensus 15 k~~~~~~~ii~~i~~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~~rY 60 (132)
..+++.+|+.+.++.+...|+--..|++ ..++..|.+.|++-+|.+
T Consensus 15 g~K~n~~Wiw~A~dr~t~~Iva~v~G~Rs~~T~~~L~~~L~~~~i~~ 61 (131)
T PF03400_consen 15 GNKKNKRWIWYAIDRKTGGIVAFVFGDRSDKTFRKLWALLKPFNIGF 61 (131)
T ss_pred ccCCCceEEEEEEeccCCcceeEEEecchhhHHHHHhhhhccccceE
Confidence 3444689999999988888875555543 357888999887666554
No 22
>COG1753 Predicted antotoxin, copG family [Signal transduction mechanisms]
Probab=24.57 E-value=62 Score=19.96 Aligned_cols=18 Identities=17% Similarity=0.440 Sum_probs=14.9
Q ss_pred CccCHHHHHHHHHHhhcC
Q 040070 1 MAVHDECKLKFLELKAKR 18 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~ 18 (132)
|+|++|+.+.+..||.++
T Consensus 6 ItI~ddvYe~L~kmK~g~ 23 (74)
T COG1753 6 ITISDDVYEKLVKMKRGK 23 (74)
T ss_pred eeecHHHHHHHHHHHccc
Confidence 678999999999998654
No 23
>PF07348 Syd: Syd protein (SUKH-2); InterPro: IPR009948 This family contains a number of bacterial Syd proteins approximately 180 residues long. It has been suggested that Syd is loosely associated with the cytoplasmic surface of the cytoplasmic membrane, and that interaction with SecY may be involved in this membrane association [].; GO: 0009898 internal side of plasma membrane; PDB: 3FFV_B.
Probab=23.54 E-value=93 Score=22.49 Aligned_cols=31 Identities=23% Similarity=0.469 Sum_probs=17.8
Q ss_pred EEEEeCCCcEEEEeecCCC-----CCChHHHhhcCC
Q 040070 24 VFKIDEKIQQVTVERVGSP-----QASYEDFTKSLP 54 (132)
Q Consensus 24 i~~i~~~~~~i~v~~~~~~-----~~~~~~~~~~L~ 54 (132)
++.+++.+.+|.++..|.. ..++.+|++.|.
T Consensus 140 lisv~N~sGeV~LE~~G~~~~~~LA~sL~eFL~~L~ 175 (176)
T PF07348_consen 140 LISVDNESGEVILEQFGTKPREVLAPSLAEFLSQLE 175 (176)
T ss_dssp EEEEETTT--EEEEETTSS-EEEEESSHHHHHHH-E
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhhHHHHHHhcC
Confidence 3455666677777776643 357788887764
No 24
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=21.92 E-value=1.3e+02 Score=20.05 Aligned_cols=33 Identities=18% Similarity=0.140 Sum_probs=28.7
Q ss_pred eecEEEEEEcCCCCChhhhhHhHhhHHHHHhhc
Q 040070 75 KSKIFFIAWAPDASRVRSKMVYASSKDRFKREL 107 (132)
Q Consensus 75 ~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l 107 (132)
...+|++.-+....|......|+++|.++..-.
T Consensus 127 ~g~iv~~sS~~~~~~~~~~~~Y~askaal~~~~ 159 (167)
T PF00106_consen 127 GGKIVNISSIAGVRGSPGMSAYSASKAALRGLT 159 (167)
T ss_dssp TEEEEEEEEGGGTSSSTTBHHHHHHHHHHHHHH
T ss_pred ccceEEecchhhccCCCCChhHHHHHHHHHHHH
Confidence 668999999999899999999999999987654
No 25
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=21.87 E-value=2.8e+02 Score=21.79 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=43.0
Q ss_pred cEEEEeecCCCCCChHHHhhcCCC--CCceeEEEeeeeecCCCceeecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCC
Q 040070 32 QQVTVERVGSPQASYEDFTKSLPA--DECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDG 109 (132)
Q Consensus 32 ~~i~v~~~~~~~~~~~~~~~~L~~--~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g 109 (132)
..+.+++.-....++.++...|.. .++||+=. +| |-||+.|-|...|--.+|+-.=-..+...-++|
T Consensus 123 ~~~l~~q~y~~~~d~~~~~~~l~~~F~D~rYikV-------dG----KPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~g 191 (345)
T PF14307_consen 123 NEILIEQKYSGEDDWKEHFRYLLPYFKDPRYIKV-------DG----KPVFLIYRPGDIPDIKEMIERWREEAKEAGLPG 191 (345)
T ss_pred ccccccccCCchhHHHHHHHHHHHHhCCCCceeE-------CC----EEEEEEECcccccCHHHHHHHHHHHHHHcCCCc
Confidence 455555543334567777776654 68899633 13 788999999877655554443334444445677
Q ss_pred eeE
Q 040070 110 IHV 112 (132)
Q Consensus 110 ~~~ 112 (132)
+..
T Consensus 192 iyi 194 (345)
T PF14307_consen 192 IYI 194 (345)
T ss_pred eEE
Confidence 764
No 26
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=21.03 E-value=1.4e+02 Score=21.53 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=24.2
Q ss_pred CCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCCChh
Q 040070 53 LPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVR 91 (132)
Q Consensus 53 L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk 91 (132)
+|..+.|+.|+|+. ..++++=+||-.+..--
T Consensus 44 ~pS~~~R~~v~Dl~--------~~~~l~~~~VaHG~gsg 74 (176)
T PF13645_consen 44 KPSGEKRFFVIDLK--------KGKLLYNTLVAHGRGSG 74 (176)
T ss_pred CCCCCCeEEEEECC--------CCEEEEeeeeecccCCC
Confidence 67889999999995 55788888888765443
No 27
>PF10678 DUF2492: Protein of unknown function (DUF2492); InterPro: IPR019620 This entry describes a family of small cytosolic proteins, about 80 amino acids in length, in which the eight invariant residues include three His residues and two Cys residues. Two pairs of these invariant residues occur in motifs HxH (where x is A or G) and CxH, both of which suggest metal-binding activity. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulphatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulphur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulphatase/maturase systems.
Probab=20.82 E-value=2.2e+02 Score=17.76 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.5
Q ss_pred HHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 100 KDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 100 k~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+.++.+.+ |....+...+.++++.+.+.+-+
T Consensus 26 ~~ai~~~F-G~~arFhTCSae~m~a~eLv~FL 56 (78)
T PF10678_consen 26 KAAIIEKF-GEDARFHTCSAEGMTADELVDFL 56 (78)
T ss_pred HHHHHHHh-CCCceEEecCCCCCCHHHHHHHH
Confidence 34446666 66788999999999999887543
No 28
>TIGR03853 matur_matur probable metal-binding protein. This protein family was identified by searching with a phylogenetic profile based on an anaerobic sulfatase-maturase enzyme, which contains multiple 4Fe-4S clusters. The linkages by phylogenetic profiling and by iron-sulfur cluster-related motifs together suggest this protein may be an accessory protein to certain maturases in sulfatase/maturase systems.
Probab=20.82 E-value=2.1e+02 Score=17.84 Aligned_cols=30 Identities=10% Similarity=0.182 Sum_probs=22.6
Q ss_pred HHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 101 DRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 101 ~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
..+.+.+ |-...+...+.++++.+.+.+-+
T Consensus 25 ~~i~~~F-G~~arFhTCSa~~m~a~~Li~FL 54 (77)
T TIGR03853 25 AAIEQKF-GEDARFHTCSAEGMTADELLQFL 54 (77)
T ss_pred HHHHHHh-CCCceEeecccccCCHHHHHHHH
Confidence 3345556 66788999999999999987643
No 29
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.49 E-value=80 Score=19.27 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=13.5
Q ss_pred CccCHHHHHHHHHHhh
Q 040070 1 MAVHDECKLKFLELKA 16 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~ 16 (132)
|+||+|+.+.+..+|.
T Consensus 4 IsIsdevY~rL~~~K~ 19 (71)
T PF02697_consen 4 ISISDEVYERLKKLKR 19 (71)
T ss_pred EEecHHHHHHHHHHhc
Confidence 6789999888888883
No 30
>PF01068 DNA_ligase_A_M: ATP dependent DNA ligase domain; InterPro: IPR012310 DNA ligase (polydeoxyribonucleotide synthase) is the enzyme that joins two DNA fragments by catalysing the formation of an internucleotide ester bond between phosphate and deoxyribose. It is active during DNA replication, DNA repair and DNA recombination. There are two forms of DNA ligase, one requires ATP (6.5.1.1 from EC), the other NAD (6.5.1.2 from EC), the latter being restricted to eubacteria. Eukaryotic, archaebacterial, viral and some eubacterial DNA ligases are ATP-dependent. The first step in the ligation reaction is the formation of a covalent enzyme-AMP complex. The co-factor ATP is cleaved to pyrophosphate and AMP, with the AMP being covalently joined to a highly conserved lysine residue in the active site of the ligase. The activated AMP residue is then transferred to the 5'phosphate of the nick, before the nick is sealed by phosphodiester-bond formation and AMP elimination [,]. Vertebrate cells encode three well-characterised DNA ligases (DNA ligases I, III and IV), all of which are related in structure and sequence. With the exception of the atypically small PBCV-1 viral enzyme, two regions of primary sequence are common to all members of the family. The catalytic region comprises six conserved sequence motifs (I, III, IIIa, IV, V-VI), motif I includes the lysine residue that is adenylated in the first step of the ligation reaction. The function of the second, less well-conserved region is unknown. When folded, each protein comprises of two distinct sub-domains: a large amino-terminal sub-domain ('domain 1') and a smaller carboxy-terminal sub-domain ('domain 2'). The ATP-binding site of the enzyme lies in the cleft between the two sub-domains. Domain 1 consists of two antiparallel beta sheets flanked by alpha helices, whereas domain 2 consists of a five-stranded beta barrel and a single alpha helix, which form the oligonucleotide-binding fold [, ]. This domain belongs to a more diverse superfamily, including catalytic domain of the mRNA capping enzyme (IPR001339 from INTERPRO) and NAD-dependent DNA ligase (IPR001679 from INTERPRO) []. ; GO: 0003910 DNA ligase (ATP) activity, 0005524 ATP binding, 0006281 DNA repair, 0006310 DNA recombination; PDB: 3RR5_A 1X9N_A 2CFM_A 3QWU_B 3GDE_A 2Q2U_C 2Q2T_A 1FVI_A 1P8L_A 2VUG_A ....
Probab=20.15 E-value=2.6e+02 Score=19.61 Aligned_cols=59 Identities=17% Similarity=0.303 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCC---------CCCceeEEEeeeee
Q 040070 5 DECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLP---------ADECRHAVFDFDFT 68 (132)
Q Consensus 5 ~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~---------~~~~rY~~~~~~~~ 68 (132)
+++.+++..........+| ++. |-+.++.......++.++...+. ...++|++||+-+-
T Consensus 56 ~~l~~~l~~~~~~~~~~~v---LDG--Elv~~d~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~vFDil~l 123 (202)
T PF01068_consen 56 PELAEALRELLFPDGPDFV---LDG--ELVVLDPNTGSPLPFQELSGRLNRRSKKIPEQSEPLQFVVFDILYL 123 (202)
T ss_dssp HHHHHHHHHHBCTSCTEEE---EEE--EEEEBETTTSSBCCHHHHHHHHBHSSSCHHHHHSCEEEEEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCceE---EEE--EEEEEecCCCcchhHHHHhhhhhhhcccchhccCcEEEEEEEEEEe
Confidence 4555555555443323444 444 45554443333467777766651 36789999999754
Done!