Query 040070
Match_columns 132
No_of_seqs 132 out of 1031
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 07:13:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040070.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040070hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7s_A Actin depolymerizing fa 100.0 1.4E-43 4.7E-48 245.4 15.9 132 1-132 8-139 (139)
2 1cnu_A Actophorin, ADF, cofili 100.0 2.4E-43 8.2E-48 243.4 16.8 131 1-132 3-133 (137)
3 2i2q_A Cofilin; N-terminal ser 100.0 2.6E-43 9.1E-48 243.3 15.0 130 1-132 6-135 (137)
4 1cfy_A Cofilin; actin-binding, 100.0 8.9E-43 3.1E-47 242.2 15.8 130 1-131 6-136 (143)
5 1vkk_A GMF-gamma, GLIA maturat 100.0 1.5E-42 5.3E-47 244.1 15.5 129 1-131 20-150 (154)
6 2kvk_A Actin severing and dyna 100.0 2E-42 6.8E-47 241.0 15.7 128 1-131 6-133 (144)
7 2xfa_A Actin depolymerization 100.0 3.9E-43 1.3E-47 245.4 12.1 129 1-131 10-144 (148)
8 2w0i_A Twinfilin-2; cytoskelet 100.0 2.8E-42 9.7E-47 237.8 15.2 128 1-132 2-135 (135)
9 1v6f_A MGMF-beta, GLIA maturat 100.0 5.7E-42 1.9E-46 240.4 15.9 129 1-131 14-144 (151)
10 1tvj_A Cofilin; ADF, actin bin 100.0 8E-42 2.7E-46 243.0 16.1 131 1-132 5-154 (166)
11 2kd5_A ADF H, actin severing a 100.0 6.7E-42 2.3E-46 238.3 15.1 128 1-131 6-133 (144)
12 2lj8_A Cofilin/actin depolymer 100.0 1.9E-41 6.4E-46 236.1 15.7 127 1-131 14-140 (144)
13 1m4j_A A6 gene product, twinfi 100.0 1.1E-40 3.7E-45 231.7 11.6 126 1-132 7-139 (142)
14 2d8b_A Twinfilin-1; cell-free 100.0 3.6E-40 1.2E-44 234.5 14.1 127 2-132 28-160 (166)
15 2vac_A Twinfilin-2; transferas 100.0 1.3E-40 4.6E-45 229.2 11.4 123 1-129 4-133 (134)
16 3daw_B Twinfilin-1, protein A6 100.0 1.2E-39 4E-44 231.4 16.4 128 1-132 22-155 (164)
17 1ak6_A Destrin; actin depolyme 100.0 2.8E-41 9.6E-46 241.8 6.9 131 1-132 14-162 (174)
18 1hqz_1 ABP1P, actin-binding pr 100.0 1.6E-38 5.5E-43 220.3 14.6 122 3-131 11-135 (141)
19 1x67_A Drebrin-like protein; c 100.0 1.7E-37 5.9E-42 216.5 14.3 122 5-131 17-139 (146)
20 2l72_A Tgadf, actin depolymeri 100.0 7.1E-38 2.4E-42 216.9 11.5 112 1-125 26-138 (139)
21 3q2b_A Pfadf1, cofilin/actin-d 100.0 9.1E-39 3.1E-43 217.6 6.4 112 1-124 7-122 (124)
22 1t3y_A Coactosin-like protein; 100.0 3.2E-35 1.1E-39 204.0 13.5 122 4-131 6-128 (141)
23 3cip_G Gelsolin; actin, dictyo 62.4 29 0.001 22.6 8.8 87 9-111 9-95 (128)
24 1t44_G Chimera of gelsolin dom 58.0 39 0.0013 22.6 8.6 86 9-110 6-91 (147)
25 3vbh_A EV71, genome polyprotei 52.4 19 0.00065 27.1 4.5 44 47-92 117-164 (297)
26 1fmd_1 Foot-and-mouth disease 51.6 21 0.0007 25.5 4.3 30 57-92 68-97 (208)
27 1qqp_1 FMDV, protein (genome p 50.5 12 0.00041 26.9 2.9 29 58-92 69-97 (213)
28 1ncq_A Coat protein VP1; HRV, 49.9 22 0.00075 26.6 4.4 34 59-92 120-161 (289)
29 1tme_1 Theiler'S murine enceph 44.7 21 0.00073 26.5 3.6 34 58-91 120-153 (274)
30 1z7s_1 Human coxsackievirus A2 44.4 30 0.001 26.0 4.4 34 59-92 121-163 (298)
31 3tu5_B Gelsolin, protein cordo 43.6 1E+02 0.0034 23.1 8.3 85 10-110 25-109 (297)
32 2wzr_1 Polyprotein; capsid, RN 42.3 16 0.00053 26.4 2.5 31 57-92 69-99 (219)
33 1d4m_1 Protein (coxsackievirus 41.9 27 0.00092 26.3 3.8 34 59-92 111-155 (299)
34 1ev1_1 Echovirus 1; viral coat 40.7 29 0.00099 25.9 3.8 34 59-92 111-155 (281)
35 1zba_1 Coat protein VP1; oligo 40.4 21 0.00072 25.5 2.9 30 57-92 68-97 (212)
36 2mev_1 Mengo virus coat protei 38.7 24 0.00083 26.3 3.1 33 59-91 121-153 (277)
37 1bev_1 Bovine enterovirus coat 38.5 41 0.0014 25.0 4.3 34 59-92 113-154 (281)
38 2ff3_A Gelsolin; protein-prote 37.6 91 0.0031 20.9 10.6 86 9-110 28-113 (150)
39 1aym_1 HRV16, human rhinovirus 36.9 29 0.00098 25.9 3.3 34 59-92 114-153 (285)
40 1hxs_1 Genome polyprotein, coa 36.6 36 0.0012 25.6 3.8 15 78-92 154-168 (302)
41 2ws9_1 P1; 3.00A {Equine rhini 33.2 34 0.0012 24.9 3.1 36 58-93 75-116 (246)
42 2ygw_A Malonyl-COA decarboxyla 32.5 22 0.00076 28.4 2.1 34 43-82 191-224 (460)
43 3cji_A Polyprotein; virus caps 29.8 31 0.001 25.5 2.4 34 58-92 116-149 (263)
44 2raq_A Conserved protein MTH88 29.6 1E+02 0.0036 19.2 5.1 55 6-61 23-77 (97)
45 2vik_A Villin 14T; actin-bindi 27.7 1.2E+02 0.0042 19.4 8.1 82 14-110 10-91 (126)
46 4goj_C Protein UNC-119 homolog 25.2 1.2E+02 0.0041 22.0 4.7 48 19-66 85-134 (240)
47 3gqq_A Protein UNC-119 homolog 24.1 1.6E+02 0.0055 20.6 5.1 49 19-67 40-90 (195)
48 2eo2_A Adult MALE hypothalamus 22.6 45 0.0015 19.6 1.7 17 114-130 42-58 (71)
49 3ffv_A Protein SYD; membrane, 20.7 76 0.0026 22.1 2.9 31 24-54 143-178 (181)
No 1
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2
Probab=100.00 E-value=1.4e-43 Score=245.43 Aligned_cols=132 Identities=73% Similarity=1.194 Sum_probs=115.6
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|++++||+++|++|+.++.+|||+|+|++++++|+++++|++..+|++|.+.||+++|||++||+++++.+|+.++|++|
T Consensus 8 i~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 87 (139)
T 1f7s_A 8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFF 87 (139)
T ss_dssp CEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEEEEE
T ss_pred cEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCcccCEEE
Confidence 57899999999999997779999999999888999999887667999999999999999999999999999999999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||++||+|.||+|||+|++|++.|+|++++|+++|++||+++.|.+|+.
T Consensus 88 I~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~ 139 (139)
T 1f7s_A 88 IAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN 139 (139)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred EEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999999999873
No 2
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A
Probab=100.00 E-value=2.4e-43 Score=243.43 Aligned_cols=131 Identities=48% Similarity=0.863 Sum_probs=124.3
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|++++||.+||++|+.++.++||+|+|++++++|+++++|+.+.+|++|.+.||+++|||++||+++++.+| .+++++|
T Consensus 3 i~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~vf 81 (137)
T 1cnu_A 3 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQVDGG-QRNKITF 81 (137)
T ss_dssp CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred CccCHHHHHHHHHHHcCCCccEEEEEEcCCCCEEEEEeccCCCCCHHHHHHhCCCCCceEEEEEeeeecCCC-CccCEEE
Confidence 679999999999999987799999999998899999998876789999999999999999999999988877 8999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||++||+|+||+|||||++|++.|+|++++|++++++||+++.|.++++
T Consensus 82 I~w~Pd~a~v~~Kmlyassk~~l~~~l~g~~~~i~a~~~~el~~~~i~~kl~ 133 (137)
T 1cnu_A 82 ILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK 133 (137)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred EEECCCCCChHHheehHHhHHHHHHHhcCceEEEEECChHHCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999874
No 3
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.6e-43 Score=243.29 Aligned_cols=130 Identities=38% Similarity=0.749 Sum_probs=111.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|++++||+++|++|+.++.++||+|+|++++++|++++ +..+.+|++|.+.||+++|||++||+++++.+| .+++++|
T Consensus 6 i~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~-~~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~-~~~k~vf 83 (137)
T 2i2q_A 6 VKVSPECLEAFQELKLGKSLRYVVFKMNDTKTEIVVEK-KSTDKDFDTFLGDLPEKDCRYAIYDFEFNLGEG-VRNKIIF 83 (137)
T ss_dssp CEECHHHHHHHHHHHHTCCCSEEEEEECTTSSEEEEEE-EECCCCHHHHHHTSCSSSCEEEEEEEEECSSSS-CEEEEEE
T ss_pred cccCHHHHHHHHHHHCCCCceEEEEEECCCCcEEEEec-CCCCCCHHHHHHhCCCcCceEEEEEeeeecCCC-CccCEEE
Confidence 57999999999999998779999999998889999987 555689999999999999999999999988877 8999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||++||+|+||+|||||++|++.|+|++++||++|++||+++.|.++++
T Consensus 84 I~w~Pd~a~vk~KMlyassk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl~ 135 (137)
T 2i2q_A 84 ISWSPDVAPIKSKMVYSSSKDTLRRAFTGIGTDIQATDFSEVAYETVLEKVT 135 (137)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHTTCCCCCEEEEECCCC------------
T ss_pred EEECCCCCChhHhhhhHHHHHHHHHHhcCceEEEEECChHHcCHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999999874
No 4
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A
Probab=100.00 E-value=8.9e-43 Score=242.19 Aligned_cols=130 Identities=39% Similarity=0.729 Sum_probs=123.7
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCC-ceeecEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSEN-VQKSKIF 79 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~-~~~~k~v 79 (132)
|++++||+++|++|+.++.+|||+|+|++++++|+|+++|+ ..+|++|.+.||+++|||++||+++++.+| +.++|++
T Consensus 6 i~v~~e~~~a~~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~-~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~~k~v 84 (143)
T 1cfy_A 6 VAVADESLTAFNDLKLGKKYKFILFGLNDAKTEIVVKETST-DPSYDAFLEKLPENDCLYAIYDFEYEINGNEGKRSKIV 84 (143)
T ss_dssp CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEEEC-CCCHHHHHTTSCTTCCEEEEEEEEEECSSSCCEEEEEE
T ss_pred cEeCHHHHHHHHHHHCCCCeeEEEEEEcCCCCEEEEEecCC-CCCHHHHHHhCCCCCcEEEEEEeeeecCCCcccccCEE
Confidence 67999999999999998889999999998889999998875 679999999999999999999999998888 8999999
Q ss_pred EEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 80 FIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 80 fI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
||+|||++||+|+||+|||+|++|++.|+|++++|+++|++||+++.|.+++
T Consensus 85 fI~w~Pd~a~v~~KmlyAssk~~l~~~l~g~~~~i~a~d~~el~~~~i~~kl 136 (143)
T 1cfy_A 85 FFTWSPDTAPVRSKMVYASSKDALRRALNGVSTDVQGTDFSEVSYDSVLERV 136 (143)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHHCTTCCEEEEESSGGGGSHHHHHHHH
T ss_pred EEEECCCCCChhheeehHhhHHHHHHhcCCceEEEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999886
No 5
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=100.00 E-value=1.5e-42 Score=244.06 Aligned_cols=129 Identities=20% Similarity=0.344 Sum_probs=121.5
Q ss_pred CccCHHHHHHHHHHhhcC--CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecE
Q 040070 1 MAVHDECKLKFLELKAKR--NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKI 78 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~ 78 (132)
++|+++|+++|++|+.++ .++||+|+|+.++++|+|+++++ +.+|++|.+.||+++|||++|++++++.+|+.++|+
T Consensus 20 ~~v~~e~~~a~~~lk~~k~~~~~~iifkId~~~~~I~v~~~~~-~~~~~e~~~~Lp~~~pRY~vy~~~~~~~~g~~~~kl 98 (154)
T 1vkk_A 20 CEVDPELKETLRKFRFRKETNNAAIIMKVDKDRQMVVLEDELQ-NISPEELKLELPERQPRFVVYSYKYVHDDGRVSYPL 98 (154)
T ss_dssp CEECHHHHHHHHHHHTCCCCSCEEEEEEEETTTTEEEEEEEEE-SCCHHHHHHHSCSSSCEEEEEECCEECTTSCEECCE
T ss_pred eeeCHHHHHHHHHHHhcccCCccEEEEEEcCCCCEEEEEEcCC-CCCHHHHHHhCCCCCcEEEEEEeeeccCCCcccccE
Confidence 578999999999999875 69999999999889999988654 578999999999999999999999999888899999
Q ss_pred EEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 79 FFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 79 vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+||+|||++|++|+||+|||+|++|++.| |++.+||++|++||+++.|.++|
T Consensus 99 vFI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~e~i~~kl 150 (154)
T 1vkk_A 99 CFIFSSPVGCKPEQQMMYAGSKNRLVQTA-ELTKVFEIRTTDDLTETWLKEKL 150 (154)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCCCEEEESSGGGCCHHHHHHHH
T ss_pred EEEEECCCCCChhhhhhhHhhHHHHHHhh-CceEEEEECChHhCCHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999886
No 6
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani}
Probab=100.00 E-value=2e-42 Score=241.03 Aligned_cols=128 Identities=23% Similarity=0.521 Sum_probs=119.7
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|.|++||+++|++||.++ +|||+|+|+.++++|+|+.+|+++.+|++|.+.||+++|||++||+++++. ++.++|++|
T Consensus 6 v~v~de~~~af~~lk~~k-~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~L~~~~prY~~y~~~~~~~-~~~~~k~vf 83 (144)
T 2kvk_A 6 VTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDA-GSKREKLIL 83 (144)
T ss_dssp CEECHHHHHHHHHHHTTS-SSEEEEEECTTSCEEEEEEEECTTCCHHHHHHTCCTTSCCEEEEEEEEEET-TEEEEEEEE
T ss_pred cccCHHHHHHHHHHhcCC-ceEEEEEEeCCCcEEEEEeccCCCCCHHHHHHhCCccCceEEEEEeeeccC-CCCcccEEE
Confidence 678999999999999976 899999999999999999888778899999999999999999999999765 457899999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++||+|+||+|||||++|++.|+| +++||++|++||+++.|.+++
T Consensus 84 I~w~Pd~a~vk~KMlyassk~~lk~~l~~-~~~i~a~d~~el~~e~i~~kl 133 (144)
T 2kvk_A 84 IQWIPDTARPREKMMYSASRDALSSVSEG-YLPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHCTT-EEEEEESSGGGGCHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHhcCC-EEEEEECChHHCCHHHHHHHH
Confidence 99999999999999999999999999988 579999999999999999886
No 7
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=3.9e-43 Score=245.44 Aligned_cols=129 Identities=30% Similarity=0.555 Sum_probs=120.0
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEe------ecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCce
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVE------RVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQ 74 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~------~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~ 74 (132)
|.+++||+++|++|+.++.+|||+|+| .++++|+++ .+|+...+|++|.+.||+++|||++||+++++.+|+.
T Consensus 10 i~v~~e~~~af~~~k~~k~~~~ii~~i-~~~~~i~v~~~~~~~~~g~~~~~~~~~~~~L~~~~prY~~y~~~~~~~~g~~ 88 (148)
T 2xfa_A 10 VNVSDECIYEFNRLKVKHLNKYIIYKI-ENLEKIVVDVLEHDMELTSLDNIIMRIKNNLKNTECRYIIADMPIPTPEGVL 88 (148)
T ss_dssp CEECHHHHHHHHHHHTSCCCSEEEEEE-ETTTEEEEEEEECCTTCCCHHHHHHHHHHTCBTTBCEEEEEEEEECCSSCCC
T ss_pred CeeCHHHHHHHHHHHCCCceEEEEEEE-CCCCEEEEEecccccccCCCCCCHHHHHHhCCcCCcEEEEEecccccCCCCc
Confidence 468999999999999988899999999 556899998 5554446899999999999999999999999988989
Q ss_pred eecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 75 KSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 75 ~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+++|+||+|||++||+|+||+|||||++|++.|+|++++||++| +||+++.|.+++
T Consensus 89 ~~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~i~atd-~el~~~~i~~k~ 144 (148)
T 2xfa_A 89 RDRIYFIFWSPGLSKPKEKMLYAASKESLVRKINGIFKSLEITC-DINEFEEELKAI 144 (148)
T ss_dssp EEEEEEEEECCTTSCHHHHHHHHHHHHHHHTTCTTCSEEEEECS-CGGGHHHHHHHH
T ss_pred ccCEEEEEECCCCCChHHHhHhHHHHHHHHHHhcCCeEEEEEEc-ccCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 999999999886
No 8
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens}
Probab=100.00 E-value=2.8e-42 Score=237.85 Aligned_cols=128 Identities=18% Similarity=0.372 Sum_probs=120.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
++|+++|++||++|+.++ ++||+|+|+.++++|+|++++ +.+|++|.+.||+++|||++||+++++.+| .++|++|
T Consensus 2 ~~v~~e~~~a~~~lk~~~-~~~ii~~id~~~~~I~v~~~~--~~~~~el~~~Lp~~~~rY~~y~~~~~~~~~-~~~k~vf 77 (135)
T 2w0i_A 2 MPLQPEAQRALQQLKQKM-VNYIQMKLDLERETIELVHTE--PTDVAQLPSRVPRDAARYHFFLYKHTHEGD-PLESVVF 77 (135)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEECC--CCCGGGGGGGSCSSSCEEEEEEEEEEETTE-EEEEEEE
T ss_pred cccCHHHHHHHHHHHcCC-CcEEEEEEeCCCCEEEEEecC--CCCHHHHHhhCCCCCcEEEEEecccccCCC-CCccEEE
Confidence 579999999999999987 999999999988999999875 579999999999999999999999987665 8999999
Q ss_pred EEEcCC-CCChhhhhHhHhhHHHHHhhcC---Cee--EEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPD-ASRVRSKMVYASSKDRFKRELD---GIH--VELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~-~a~vk~KMlyassk~~l~~~l~---g~~--~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||+ +|++|+||+|||+|++|++.|. |++ ++||++|++||+++.|.++++
T Consensus 78 I~w~P~~~~~vk~kMlYassk~~l~~~l~~~~Gi~v~~~iea~d~~el~~~~i~~kl~ 135 (135)
T 2w0i_A 78 IYSMPGYKCSIKERMLYSSCKSRLLDSVEQDFHLEIAKKIEIGDGAELTAEFLDDEVH 135 (135)
T ss_dssp EEECCGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCGGGCCHHHHHHHHC
T ss_pred EEECCCCCCCHHHHhHhHHhHHHHHHHHhhccCCceeEEEEcCChhhcCHHHHHHhhC
Confidence 999999 9999999999999999999998 877 899999999999999999985
No 9
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=5.7e-42 Score=240.43 Aligned_cols=129 Identities=16% Similarity=0.337 Sum_probs=121.3
Q ss_pred CccCHHHHHHHHHHhhcC--CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecE
Q 040070 1 MAVHDECKLKFLELKAKR--NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKI 78 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~ 78 (132)
++|+++|+++|++|+.++ .++||+|+|+.++++|+|++++. +.+|++|.+.||+++|||++||++|++.+|+.++|+
T Consensus 14 ~~v~~e~~~a~~~lr~~k~~~~~~iifki~~~~~~I~v~~~~~-~~~~~el~~~Lp~~~prY~~~~~~~~~~~~~~~~k~ 92 (151)
T 1v6f_A 14 CDVAEDLVEKLRKFRFRKETHNAAIIMKIDKDERLVVLDEELE-GVSPDELKDELPERQPRFIVYSYKYQHDDGRVSYPL 92 (151)
T ss_dssp CEECHHHHHHHHHHHTCCCSSCEEEEEEECSSSCEEEEEEEEE-SCCHHHHGGGSCSSSCEEEEEECCEECTTSCEECCE
T ss_pred EEECHHHHHHHHHHHhccCCCccEEEEEEcCCCcEEEEEecCC-CCCHHHHHhhCCCCCceEEEEecccccCCCcccccE
Confidence 578999999999999975 58999999999888999988654 468999999999999999999999999888889999
Q ss_pred EEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 79 FFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 79 vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
+||+|||++|++|+||+|||+|++|++.| |++++||++|++||+++.|.+++
T Consensus 93 vfI~w~P~~a~vk~KMlYAssk~~l~~~l-gi~~~iea~d~~El~~~~i~~kl 144 (151)
T 1v6f_A 93 CFIFSSPVGCKPEQQMMYAGSKNKLVQTA-ELTKVFEIRNTEDLTEEWLREKL 144 (151)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHHHT-TCSEEEEESSGGGCCHHHHHHHH
T ss_pred EEEEECCCCCChHHheehHHHHHHHHHHh-CCeEEEEECChHHCCHHHHHHHH
Confidence 99999999999999999999999999999 89999999999999999999986
No 10
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus}
Probab=100.00 E-value=8e-42 Score=243.04 Aligned_cols=131 Identities=31% Similarity=0.628 Sum_probs=120.9
Q ss_pred CccCHHHHHHHHHHhhcC---------CcEEEEEEEeCCCcEEEEee--------cCCC-CCChHHHhhcCCCCCceeEE
Q 040070 1 MAVHDECKLKFLELKAKR---------NHRFIVFKIDEKIQQVTVER--------VGSP-QASYEDFTKSLPADECRHAV 62 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~---------~~~~ii~~i~~~~~~i~v~~--------~~~~-~~~~~~~~~~L~~~~~rY~~ 62 (132)
|.|++||+++|++||.++ .+|||||+|++++..|++++ .+.. +.+|++|++.||+++|||++
T Consensus 5 i~vs~e~~~~f~~~k~~k~~~~~~~~~~~~~iifki~~~~~~iivee~~~~~~~~~~~~~~~~~~ef~~~L~~~~prY~v 84 (166)
T 1tvj_A 5 VTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYAL 84 (166)
T ss_dssp CEECHHHHHHHHHHHSCCCSCHHHHTTCEEEEEEEECTTSSEEEEEEEEEEETTTBTTTBSCHHHHHHHHCCTTSCEEEE
T ss_pred CeeCHHHHHHHHHHhcCCCccccccccceeEEEEEECCCCcEEEEeccccccccccCccccCCHHHHHHhCCCCCcEEEE
Confidence 679999999999999886 48999999999888999886 3432 57899999999999999999
Q ss_pred EeeeeecCCCceeecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCC-CHHHHhhhhC
Q 040070 63 FDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEM-SLDIIKGRAL 132 (132)
Q Consensus 63 ~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl-~~~~i~~~~~ 132 (132)
||++|++.+| .+++|+||+|||++||+|+||+|||||++|++.|+|++.+||++|++|| +++.|.++|.
T Consensus 85 y~~~~~~~~~-~~~klvfI~W~Pd~a~vr~KMlYAssk~~lk~~l~gi~~~i~atd~~el~~~~~i~ekl~ 154 (166)
T 1tvj_A 85 YDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVNGLDDIKDRSTLGEKLG 154 (166)
T ss_dssp EEEEEEESSC-EEEEEEEEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCCEEEESSGGGTCCHHHHHHHHT
T ss_pred EeccccCCCC-CccCEEEEEECCCCCCHHHhhHHHHhHHHHHHHhcCCeEEEEECChHHcCCHHHHHHHhC
Confidence 9999988776 8999999999999999999999999999999999999999999999999 9999999873
No 11
>2kd5_A ADF H, actin severing and dynamics regulatory protein; cofilin, solution structure, hormone; NMR {Leishmania donovani} PDB: 2kvk_A
Probab=100.00 E-value=6.7e-42 Score=238.29 Aligned_cols=128 Identities=23% Similarity=0.522 Sum_probs=121.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|++++||+++|++|+.++ +|||+|+|++++++|+|+++|..+.+|++|.+.||+++|||++||+++++.+ +.++|++|
T Consensus 6 i~vs~e~~~a~~~~~~~~-~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~-~~~~k~vf 83 (144)
T 2kd5_A 6 VTLEESVRGAIDDLRMKK-SRYVMMCIGADGKKIEVTEVGERSVNYTDLKEKFSTEKPCYVAFDFEYNDAG-SKREKLIL 83 (144)
T ss_dssp CBCCHHHHHHHHHHTTTS-SSEEEEEECSSSCBEEEEEECCSCCCHHHHTTTTSCSSCEEEEEEEEEESSS-CEEEEEEE
T ss_pred CCcCHHHHHHHHHHHcCC-eeEEEEEECCCCCEEEEEeccCCCCCHHHHHHhCCccCcEEEEEEEEecCCC-CCccCEEE
Confidence 679999999999999988 9999999998889999999887778999999999999999999999998776 57899999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++||+|.||+|||+|++|++.|+|+ .+|+++|++||+++.|.+++
T Consensus 84 I~w~Pd~a~vk~KMlyAssk~~l~~~l~g~-~~i~a~d~~el~~~~i~~kl 133 (144)
T 2kd5_A 84 IQWIPDTARPREKMMYSASRDALSSVSEGY-LPIQANDESGLDAEEIIRKV 133 (144)
T ss_dssp EEECCCCSCSHHHHHHHHHGGGGTTTTCCS-EEEEESSSSSSSHHHHHHHH
T ss_pred EEECCCCCCHHHHhhhHHHHHHHHHHhCCe-EEEEECChHHCCHHHHHHHH
Confidence 999999999999999999999999999999 99999999999999999886
No 12
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei}
Probab=100.00 E-value=1.9e-41 Score=236.13 Aligned_cols=127 Identities=28% Similarity=0.624 Sum_probs=116.6
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|+|++||+++|++||.++ .||++|+|+++ ++++|+..+..+.+|++|++.||+++|||++|++++.+.++ .+++|+|
T Consensus 14 i~vsde~~~af~~lk~~k-~~~ii~~i~d~-~~~vv~~~~~~~~~~de~~~~L~~~~prY~~y~~~~~~~~~-~~~k~vf 90 (144)
T 2lj8_A 14 VSVADECVTALNDLRHKK-SRYVIMHIVDQ-KSIAVKTIGERGANFDQFIEAIDKNVPCYAAFDFEYTTNDG-PRDKLIL 90 (144)
T ss_dssp CEECHHHHHHHHHHTTTS-SSEEEEEEETT-TEEEEEEECSSCCCHHHHHHHCCSSSCEEEEEEEEECSSSS-SEEEEEE
T ss_pred ceeCHHHHHHHHHHhcCC-ceEEEEEEECC-cEEEEEecCCCCCCHHHHHHhCcccCCcceeeeeeeccCCC-CcccEEE
Confidence 678999999999999876 89999999876 56667777777889999999999999999999999987665 6789999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||++||+|+||+|||||++|++.|+|++ +||++|++||+++.|.++|
T Consensus 91 I~w~Pd~a~vk~KMlYASsk~~l~~~l~~~~-~i~a~d~~el~~e~i~~kl 140 (144)
T 2lj8_A 91 ISWNPDSGAPRTKMLYSSSRDALVPLTQGFQ-GIQANDASGLDFEEISRKV 140 (144)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHTTTSE-EEECCGGGTSCHHHHHHHH
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHhCCee-EEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999886 8999999999999999987
No 13
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2
Probab=100.00 E-value=1.1e-40 Score=231.65 Aligned_cols=126 Identities=28% Similarity=0.492 Sum_probs=114.2
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCC----ChHHHhhcC-CCCCceeEEEeeeeecCCCcee
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQA----SYEDFTKSL-PADECRHAVFDFDFTTSENVQK 75 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~~rY~~~~~~~~~~~~~~~ 75 (132)
|.+++||+++|++|+.++ +|||+|+|++ ++|+|+++|+... +|++|++.| |+++|||++||+++.+.+ +
T Consensus 7 i~v~~e~~~~f~~~k~~k-~~~ii~~i~~--~~ivv~~~~~~~~~~~~~~~e~~~~l~~~~~~rY~~~~~~~~~~~---~ 80 (142)
T 1m4j_A 7 IQASEDVKEIFARARNGK-YRLLKISIEN--EQLVVGSCSPPSDSWEQDYDSFVLPLLEDKQPCYVLFRLDSQNAQ---G 80 (142)
T ss_dssp CCBCHHHHHHHHHHHTTT-CSEEEEEECS--SSEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT---E
T ss_pred CeECHHHHHHHHHHhcCC-eEEEEEEEcC--CEEEEEeecCCCccccccHHHHHHhhCCCCCceEEEEEcCcCCCC---C
Confidence 579999999999999988 9999999977 4888888776543 478999988 799999999999988654 5
Q ss_pred ecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeE--EEEEcCCCCCCHHHHhhhhC
Q 040070 76 SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV--ELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 76 ~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~--~i~~~d~~dl~~~~i~~~~~ 132 (132)
+||+||+|||++||+|.||+|||||++|++.|+|++. +||++|++||+++.|.+++.
T Consensus 81 ~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~i~~~l~ 139 (142)
T 1m4j_A 81 YEWIFIAWSPDHSHVRQKMLYAATRATLKKEFGGGHIKDEVFGTVKEDVSLHGYKKYLL 139 (142)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHHHHC
T ss_pred ceEEEEEEcCCCCCHHHHHHHHHHHHHHHHHcCCceeEEEEEeCChHHCCHHHHHHHHh
Confidence 9999999999999999999999999999999999887 99999999999999998873
No 14
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus}
Probab=100.00 E-value=3.6e-40 Score=234.51 Aligned_cols=127 Identities=17% Similarity=0.342 Sum_probs=119.3
Q ss_pred ccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEE
Q 040070 2 AVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFI 81 (132)
Q Consensus 2 ~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI 81 (132)
+|+++|++||++|+.+ .++||+|+|+.++++|+|++++ +.+|++|.+.||+++|||++||+++++.++ .++|++||
T Consensus 28 ~v~~e~~~a~~~lk~~-~~~~vifkId~~~~~I~v~~~~--~~~~~el~~~Lp~~~pRY~~y~~~~~~~~~-~~~k~vFI 103 (166)
T 2d8b_A 28 PISRDAFQALEKLSKK-QLNYVQLEIDIKNETIILANTE--NTELRDLPKRIPKDSARYHFFLYKHSHEGD-YLESVVFI 103 (166)
T ss_dssp CBCHHHHHHHHHHHTT-CCSCCEEEEETTTTEEEEEECC--CCCSTTHHHHSCSSCCEEEEEEEEEEETTE-EEEEEEEE
T ss_pred CcCHHHHHHHHHHHcC-CCcEEEEEEeCCCCEEEEEecC--CCCHHHHHHhCCCCCceEEEEeccccCCCC-ccccEEEE
Confidence 4899999999999998 5999999999988999999876 578999999999999999999999988776 69999999
Q ss_pred EEcCC-CCChhhhhHhHhhHHHHHhhcC---Ce--eEEEEEcCCCCCCHHHHhhhhC
Q 040070 82 AWAPD-ASRVRSKMVYASSKDRFKRELD---GI--HVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 82 ~w~P~-~a~vk~KMlyassk~~l~~~l~---g~--~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
+|||+ +|++|+||+|||+|.+|++.|. |+ +++||++|++||+++.|.++++
T Consensus 104 ~w~P~~~~~ik~KMlYAssk~~l~~~l~~~~Gi~v~~~iea~d~~El~~~~i~~kl~ 160 (166)
T 2d8b_A 104 YSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 160 (166)
T ss_dssp EECCCSSSCHHHHHHHHHTTHHHHHHHTTSSCCCCSEEEEESSSTTCCHHHHHHHHH
T ss_pred EECCCCCCCHHHeeehhhhHHHHHHHHhhccCCceeEEEEeCChHHCCHHHHHHHhC
Confidence 99999 9999999999999999999999 87 8999999999999999999873
No 15
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=229.16 Aligned_cols=123 Identities=27% Similarity=0.436 Sum_probs=112.0
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCC----ChHHHhhcC-CCCCceeEEEeeeeecCCCcee
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQA----SYEDFTKSL-PADECRHAVFDFDFTTSENVQK 75 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~----~~~~~~~~L-~~~~~rY~~~~~~~~~~~~~~~ 75 (132)
|.|++||+++|++|+.++ +|||+|+|++ ++|+|+++|+... +|++|++.| |+++|||++||+++.+.+ +
T Consensus 4 i~v~~e~~~~f~~~k~~k-~r~ii~~i~~--~~ivv~~~~~~~~~~~~~~~~~~~~l~~~~~prY~v~~~~~~~~~---~ 77 (134)
T 2vac_A 4 IHATEELKEFFAKARAGS-VRLIKVVIED--EQLVLGASQEPVGRWDQDYDRAVLPLLDAQQPCYLLYRLDSQNAQ---G 77 (134)
T ss_dssp CEECHHHHHHHHHHHHSS-CSEEEEEEET--TEEEEEEEECCCSCHHHHHHHHHGGGCCTTCCEEEEEEEEEEETT---E
T ss_pred cEeCHHHHHHHHHHhcCC-eEEEEEEecC--CEEEEEeecCcCcccccCHHHHHHhcCCCCCCEEEEEECCcCCCC---C
Confidence 679999999999999988 9999999987 4899988776543 478999998 689999999999998754 5
Q ss_pred ecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeE--EEEEcCCCCCCHHHHhh
Q 040070 76 SKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHV--ELQATDPSEMSLDIIKG 129 (132)
Q Consensus 76 ~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~--~i~~~d~~dl~~~~i~~ 129 (132)
+||+||+|||++||+|.||+|||||++|++.|+|++. +||++|++||+++.+++
T Consensus 78 ~k~vfI~w~Pd~a~vr~KMlYAssk~~lk~~l~g~~~~~~i~atd~~el~~~~~~~ 133 (134)
T 2vac_A 78 FEWLFLAWSPDNSPVRLKMLYAATRATVKKEFGGGHIKDELFGTVKDDLSFAGYQK 133 (134)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHCGGGEEEEEEESSHHHHSHHHHHH
T ss_pred ceEEEEEEcCCCCCHHHHhHHHHHHHHHHHHcCCCeeeEEEEeCChHHcCHHHHhc
Confidence 9999999999999999999999999999999999887 99999999999999875
No 16
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A
Probab=100.00 E-value=1.2e-39 Score=231.43 Aligned_cols=128 Identities=16% Similarity=0.337 Sum_probs=118.7
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
++|+++|+++|++|+.++ ++||+|+|+.++++|+|+++ .+.+|++|.+.||+++|||+||+|++++. |+...++||
T Consensus 22 ~~v~~e~~~a~~~lk~~~-~~~iifkId~~~e~I~v~~~--~~~~~~df~~~Lp~~~pRY~vyd~~~~~~-g~~~~~~if 97 (164)
T 3daw_B 22 FPISRDAFQALEKLSKKQ-LNYVQLEIDIKNETIILANT--ENTELRDLPKRIPKDSARYHFFLYKHSHE-GDYLESVVF 97 (164)
T ss_dssp CCBCHHHHHHHHHHHTTS-CSEEEEEEETTTTEEEEEEC--CCCCGGGSGGGSCSSSCEEEEEEEEEEET-TEEEEEEEE
T ss_pred EEECHHHHHHHHHHHcCC-ceEEEEEEeCCCCEEEEEeC--CCCCHHHHHHhCCccCceEEEEecccccC-CCccccEEE
Confidence 378999999999999985 89999999998899999987 35899999999999999999999999866 666788999
Q ss_pred EEEcCC-CCChhhhhHhHhhHHHHHhhcC---Ce--eEEEEEcCCCCCCHHHHhhhhC
Q 040070 81 IAWAPD-ASRVRSKMVYASSKDRFKRELD---GI--HVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 81 I~w~P~-~a~vk~KMlyassk~~l~~~l~---g~--~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
|+|||+ +|++|+||+|||||++|++.|. |+ ..+||++|++||+++.|.++|+
T Consensus 98 i~~~P~~~a~ik~kMlYASsK~~l~~~l~~~~Gi~i~k~iea~d~~Elt~e~l~ekl~ 155 (164)
T 3daw_B 98 IYSMPGYTCSIRERMLYSSCKSPLLEIVERQLQMDVIRKIEIDNGDELTADFLYDEVH 155 (164)
T ss_dssp EEECCSTTSCHHHHHHHHHTHHHHHHHHHHHHCCCEEEEEEESSSSSCCHHHHHHHHS
T ss_pred EEEcCCCCCCHHHHHHHHHhHHHHHHHHhhccCCceeEEEEeCChHHcCHHHHHhHhC
Confidence 999999 9999999999999999999998 88 8899999999999999999874
No 17
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M
Probab=100.00 E-value=2.8e-41 Score=241.84 Aligned_cols=131 Identities=31% Similarity=0.607 Sum_probs=119.4
Q ss_pred CccCHHHHHHHHHHhhcC---------CcEEEEEEEeCCCcEEEEeec--------CCC-CCChHHHhhcCCCCCceeEE
Q 040070 1 MAVHDECKLKFLELKAKR---------NHRFIVFKIDEKIQQVTVERV--------GSP-QASYEDFTKSLPADECRHAV 62 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~---------~~~~ii~~i~~~~~~i~v~~~--------~~~-~~~~~~~~~~L~~~~~rY~~ 62 (132)
|.|++||+++|++|+.++ .+|||||+|+++++.|++++. |.+ ..+|++|++.||+++|||++
T Consensus 14 i~vs~e~~~~f~~~k~~ks~~~~~~~~~~~~iifki~~~~~~Iivee~~~~~~~~~g~~~~~~~~ef~~~L~~~~prY~l 93 (174)
T 1ak6_A 14 VQVADEVCRIFYDMKVRKCSTPEEIKKRKKAVIFCLSADKKCIIVEEGKEILVGDVGVTITDPFKHFVGMLPEKDCRYAL 93 (174)
T ss_dssp CCCCSHHHHHHHHTSSSCCSSHHHHGGGCCCEECCCSTTSCSCCCCSSCCCCSSSTTTTCCSSSHHHHHTSCSSCCCCEE
T ss_pred CccCHHHHHHHHHHHcCCcccccccccceeEEEEEECCCCcEEEEeccccccccccCcccCCCHHHHHHhCCCCCcEEEE
Confidence 578999999999999884 589999999988788888762 222 57899999999999999999
Q ss_pred EeeeeecCCCceeecEEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070 63 FDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL 132 (132)
Q Consensus 63 ~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~ 132 (132)
||++|.+.+| .+++|+||+|||++||+|+||+|||||++|++.|+|++.+||++|++||+++.|.++|.
T Consensus 94 y~~~~~~~~~-~~~klvfI~W~Pd~a~vk~KMlYAssk~~lk~~l~gi~~~i~atd~~El~~e~i~~kl~ 162 (174)
T 1ak6_A 94 YDASFETKES-RKEELMFFLWAPELAPLKSKMIYASSKDAIKKKFQGIKHECQANGPEDLNRACIAEKLG 162 (174)
T ss_dssp CCCCCCCSSC-SCCCCCEEEECCSSSCHHHHHSHHHHHHHHHHHCTTCSCCEEESSTTTTCHHHHHHHTT
T ss_pred EeCcccCCCC-ccccEEEEEECCCCCCHHHhhHHHHHHHHHHHHhcCCeEEEEECChhhcCHHHHHHHhc
Confidence 9999987776 89999999999999999999999999999999999999999999999999999999873
No 18
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2
Probab=100.00 E-value=1.6e-38 Score=220.32 Aligned_cols=122 Identities=16% Similarity=0.362 Sum_probs=113.1
Q ss_pred cCHHHHHHHHHHhhcC--CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 3 VHDECKLKFLELKAKR--NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 3 vs~e~~~a~~~lk~~~--~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
.+++|+++|++|+.++ .++||+|+|++ +++|+|+++|. +|++|.+.||+++|||++|+++ .+|+.++|++|
T Consensus 11 ~~~e~~~a~~~~~~~~~~~~~~ii~~i~~-~~~i~v~~~g~---~~~el~~~l~~~~~rY~~~~~~---~~~~~~~k~vf 83 (141)
T 1hqz_1 11 HSREIDAEYLKIVRGSDPDTTWLIISPNA-KKEYEPESTGS---SFHDFLQLFDETKVQYGLARVS---PPGSDVEKIII 83 (141)
T ss_dssp THHHHHHHHHHHHHTCCTTCCEEEEEECT-TSCEEEEEEES---CHHHHHTCCCTTSCEEEEEEEC---CTTCSCCEEEE
T ss_pred CCHHHHHHHHHHHhCCCCCceEEEEEEcC-CCEEEEEeecC---CHHHHHhhCCCCceEEEEEEEe---cCCCceeeEEE
Confidence 3599999999999985 69999999988 57899998774 8999999999999999999997 45678999999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHh-hcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKR-ELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~-~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|+|||+++|+|+||+|||+|++|++ .|+|++++|++++++||+++.|.+++
T Consensus 84 I~w~Pd~~~vk~Kmlyas~k~~l~~~~l~g~~~~i~a~~~~el~~e~i~~kl 135 (141)
T 1hqz_1 84 IGWCPDSAPLKTRASFAANFAAVANNLFKGYHVQVTARDEDDLDENELLMKI 135 (141)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHTSCSCSEEEEESSGGGGCHHHHHHHH
T ss_pred EEECCCCCChhheEEEeccHHHHHHHhCCceEEEEEECChHHCCHHHHHHHH
Confidence 9999999999999999999999997 99999999999999999999999886
No 19
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens}
Probab=100.00 E-value=1.7e-37 Score=216.51 Aligned_cols=122 Identities=16% Similarity=0.259 Sum_probs=114.1
Q ss_pred HHHHHHHHHHhhcC-CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEE
Q 040070 5 DECKLKFLELKAKR-NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAW 83 (132)
Q Consensus 5 ~e~~~a~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w 83 (132)
++|.++|++++.++ .+||++|+|++++++|+|..+|+ ++|++|.+.|++++|||++||+++ +++.++|+|||.|
T Consensus 17 ~e~~~a~~~v~~~~~~~~wi~~~i~~~~~~l~v~~~G~--~~~~e~~~~L~~~~~~Y~~~r~~~---~~~~~~K~vfI~W 91 (146)
T 1x67_A 17 PALQEAYVRVVTEKSPTDWALFTYEGNSNDIRVAGTGE--GGLEEMVEELNSGKVMYAFCRVKD---PNSGLPKFVLINW 91 (146)
T ss_dssp HHHHHHHHHHHCSSSSCSEEEEEESSSSSCEEEEEEES--SCHHHHHHHCCTTSEEEEEEEEEC---SSSCSEEEEEEEE
T ss_pred HHHHHHHHHHHcCCCCccEEEEEEeCCCcEEEEEeccC--CCHHHHHhhCCCCceEEEEEEEEc---CCCCeeeEEEEEE
Confidence 99999999999987 49999999988767899998874 689999999999999999999974 3567999999999
Q ss_pred cCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 84 APDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 84 ~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
||+++|+|.||+|||+|++|++.|+|++.+|++++++||+++.|.+++
T Consensus 92 ~pd~a~v~~Km~yas~k~~lk~~l~g~~~ei~at~~~el~~~~i~~k~ 139 (146)
T 1x67_A 92 TGEGVNDVRKGACASHVSTMASFLKGAHVTINARAEEDVEPECIMEKV 139 (146)
T ss_dssp ECTTSCHHHHHHHHHHHHHHHHHTTTEEEEECCCSGGGGCHHHHHHHH
T ss_pred CCCCCChhheeeehhhHHHHHHhcCCcEEEEEeCChHHCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999886
No 20
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii}
Probab=100.00 E-value=7.1e-38 Score=216.87 Aligned_cols=112 Identities=38% Similarity=0.740 Sum_probs=103.1
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF 80 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf 80 (132)
|++++||+++|++|+.++++|||+|+|++ ++|+++++++ + +|++|.+.||+++|||++|| +| ++|+|
T Consensus 26 i~vs~e~~~af~~lk~~k~~~~ii~~I~~--~eivv~~~g~-~-~~~el~~~Lp~~~prY~~y~------dg---~k~vF 92 (139)
T 2l72_A 26 MGVDENCVARFNELKIRKTVKWIVFKIEN--TKIVVEKDGK-G-NADEFRGALPANDCRFGVYD------CG---NKIQF 92 (139)
T ss_dssp CEECHHHHHHHHHHTTTTCCCEEEEEEET--TEEEEEEEES-S-HHHHHHHHCCCCSCCEEEEE------CS---SCEEE
T ss_pred CCcCHHHHHHHHHHhCCCCeeEEEEEEcC--CEEEEeecCC-C-CHHHHHHhCCCCCcEEEEEc------CC---CcEEE
Confidence 46899999999999998779999999988 6788888776 4 99999999999999999999 23 89999
Q ss_pred EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEE-EEEcCCCCCCHH
Q 040070 81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVE-LQATDPSEMSLD 125 (132)
Q Consensus 81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~-i~~~d~~dl~~~ 125 (132)
|+|||++||+|+||+|||||++|++.|+|++.. +++++++||+++
T Consensus 93 I~w~Pd~a~vk~KMlYASsk~~lk~~l~g~~v~~iea~~~~DLte~ 138 (139)
T 2l72_A 93 VLWCPDNAPVKPRMTYASSKDALLKKLDGATAVALEAHEMGDLAPL 138 (139)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHHHCSCCSCEEEESSTTTTSCC
T ss_pred EEECCCCCChhHeeehHhhHHHHHHHhCCceEEEEEeCCHHHCccC
Confidence 999999999999999999999999999998764 999999999975
No 21
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A
Probab=100.00 E-value=9.1e-39 Score=217.56 Aligned_cols=112 Identities=25% Similarity=0.537 Sum_probs=103.5
Q ss_pred CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCC---ceeEEEeeeeecCCCceeec
Q 040070 1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADE---CRHAVFDFDFTTSENVQKSK 77 (132)
Q Consensus 1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~---~rY~~~~~~~~~~~~~~~~k 77 (132)
|++++||+++|++||.++++|||+|+|++ ++|+|++.+. ..+|++|.+.||+++ |||++||+ +++
T Consensus 7 i~vs~e~~~~f~~lk~~k~~~~ii~kI~~--~~ivv~~~~~-~~~~~~f~~~Lp~~~~~~prY~vy~~---------~~k 74 (124)
T 3q2b_A 7 IRVNDNCVTEFNNMKIRKTCGWIIFVIQN--CEIIIHSKGA-STTLTELVQSIDKNNEIQCAYVVFDA---------VSK 74 (124)
T ss_dssp CEECHHHHHHHHHHHHHTSSEEEEEEEET--TEEEEEEEEE-CSCHHHHHHHHHHCTTCSEEEEEEEC---------SSC
T ss_pred CccCHHHHHHHHHHhcCCCcEEEEEEEcC--CEEEEeccCC-CCCHHHHHHHccccCCCCcEEEEEec---------CCC
Confidence 67999999999999998889999999998 4888988765 479999999999999 99999998 469
Q ss_pred EEEEEEcCCCCChhhhhHhHhhHHHHHhhcCCee-EEEEEcCCCCCCH
Q 040070 78 IFFIAWAPDASRVRSKMVYASSKDRFKRELDGIH-VELQATDPSEMSL 124 (132)
Q Consensus 78 ~vfI~w~P~~a~vk~KMlyassk~~l~~~l~g~~-~~i~~~d~~dl~~ 124 (132)
++||+|||++||+|+||+|||||++|++.|+|++ .+++++|++||++
T Consensus 75 ~vfI~w~Pd~a~vk~KMlYASsk~~l~~~l~g~~~~~i~a~d~~dlt~ 122 (124)
T 3q2b_A 75 IHFFMYARESSNSRDRMTYASSKQAILKKIEGVNVLTSVIESAQDVAD 122 (124)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHHTTSTTSEECCSCBCSHHHHTT
T ss_pred EEEEEECCCCCChhHhhhhHHHHHHHHHHhCCCceEEEEecCHHHccc
Confidence 9999999999999999999999999999999998 5899999999874
No 22
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A
Probab=100.00 E-value=3.2e-35 Score=204.02 Aligned_cols=122 Identities=19% Similarity=0.322 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHhhcC-CcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEE
Q 040070 4 HDECKLKFLELKAKR-NHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIA 82 (132)
Q Consensus 4 s~e~~~a~~~lk~~~-~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~ 82 (132)
+|+|.+||++++.++ .++|++|++++ .+|+|+++|+ +|+||.+.||+++|||++||+. ..++++.++|+|||.
T Consensus 6 ~~~~~~a~~~v~~~~~~~~wilf~~~~--~~i~v~~~G~---g~~e~~~~L~~~~~~Ya~~r~~-~~~~~~~~~K~vfI~ 79 (141)
T 1t3y_A 6 KEACRAAYNLVRDDGSAVIWVTFKYDG--STIVPGEQGA---EYQHFIQQCTDDVRLFAFVRFT-TGDAMSKRSKFALIT 79 (141)
T ss_dssp HHHHHHHHHHHHCTTSSCCEEEEEEET--TEEEEEEEES---SHHHHHHHCCTTCEEEEEEEEE-ECSGGGCEEEEEEEE
T ss_pred hHHHHHHHHHHHcCCCCceEEEEEEcC--CEEEEEecCC---CHHHHHhhCCCCceEEEEEEEE-ecCCCCceeeEEEEE
Confidence 589999999999977 59999999988 3599998885 4999999999999999999996 556678899999999
Q ss_pred EcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhh
Q 040070 83 WAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRA 131 (132)
Q Consensus 83 w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~ 131 (132)
|||+++|++.||+|||++++|++.|+|++.+|+++|++||+++.|.+++
T Consensus 80 W~pd~~~~~~K~~~as~k~~vk~~l~g~~~~i~a~d~~el~~~~I~~kv 128 (141)
T 1t3y_A 80 WIGENVSGLQRAKTGTDKTLVKEVVQNFAKEFVISDRKELEEDFIKSEL 128 (141)
T ss_dssp EECTTSCHHHHHHHHHHHHHHTTTSCCCSEEEEECSGGGGSHHHHHHHH
T ss_pred ECCCCCCHHHhhhHHHHHHHHHHHhcccEEEEEeCChHHCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999886
No 23
>3cip_G Gelsolin; actin, dictyostelium discoideum, actin-associated methyl histidine, ATP-binding, cytoskeleton, nucleotide-BIN phosphoprotein; HET: HIC ATP; 1.60A {Homo sapiens} SCOP: d.109.1.1 PDB: 3ci5_G* 1p8z_G* 1d4x_G* 1nlv_G* 1mdu_A* 1nm1_G* 1nmd_G* 1yag_G* 1yvn_G* 3cjb_G* 3cjc_G* 1esv_S* 1eqy_S* 1c0g_S* 1c0f_S* 1dej_S* 3a5l_S* 3a5m_S* 3a5n_S* 3a5o_S*
Probab=62.37 E-value=29 Score=22.57 Aligned_cols=87 Identities=9% Similarity=0.101 Sum_probs=55.5
Q ss_pred HHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCC
Q 040070 9 LKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDAS 88 (132)
Q Consensus 9 ~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a 88 (132)
.+|++... ....-|.+|++. +.+.|.+.. ...+-+.+ ||++.. .|....| +....+-+|+...|
T Consensus 9 ~~~~~~g~--~~gl~vWrIe~~-~~~~vp~~~---------~G~Fy~gd-~YIvl~-ty~~~~g--~~~~~i~~W~G~~s 72 (128)
T 3cip_G 9 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTNL---------YGDFFTGD-AYVILK-TVQLRNG--NLQYDLHYWLGNEC 72 (128)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGGG---------TTEEETTC-EEEEEE-EEECTTS--CEEEEEEEEECTTC
T ss_pred hhHHhcCC--CCCeEEEEEeCC-EEEECChHH---------cCeecCCC-eEEEEE-EEecCCC--ceEEEEEEEcCCCC
Confidence 46776554 356788999864 333333211 12344455 466543 2322222 55678899999999
Q ss_pred ChhhhhHhHhhHHHHHhhcCCee
Q 040070 89 RVRSKMVYASSKDRFKRELDGIH 111 (132)
Q Consensus 89 ~vk~KMlyassk~~l~~~l~g~~ 111 (132)
+..++..-|.--..|-+.|+|-.
T Consensus 73 s~de~g~Aa~~aveLd~~lgg~~ 95 (128)
T 3cip_G 73 SQDESGAAAIFTVQLDDYLNGRA 95 (128)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTCE
T ss_pred CcchHHHHHHHHHHHHHHcCCCc
Confidence 99999888887778888898743
No 24
>1t44_G Chimera of gelsolin domain 1 and C-terminal domain of thymosin beta-4; structural protein; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1
Probab=57.99 E-value=39 Score=22.55 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=54.7
Q ss_pred HHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCC
Q 040070 9 LKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDAS 88 (132)
Q Consensus 9 ~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a 88 (132)
.+|++... ....-|.+|++. +.+.|.... ...|=..+ ||++.. .|.... .+...++-+|+...|
T Consensus 6 ~~f~~~g~--~~gl~VWrIe~~-~~~~vp~~~---------~G~Fy~gd-~YIvl~-ty~~~~--g~~~~~i~~W~G~~s 69 (147)
T 1t44_G 6 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTNL---------YGDFFTGD-AYVILK-TVQLRN--GNLQYDLHYWLGNEC 69 (147)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGGG---------TTEEETTC-EEEEEE-EEECTT--SCEEEEEEEEECTTC
T ss_pred hhhhccCC--CCCeEEEEEeCC-EEEECChHH---------cCeecCCC-eEEEEE-EEecCC--CceEEEEEEEeCCCC
Confidence 36776554 356788999864 333333211 12344455 466543 232222 255678899999999
Q ss_pred ChhhhhHhHhhHHHHHhhcCCe
Q 040070 89 RVRSKMVYASSKDRFKRELDGI 110 (132)
Q Consensus 89 ~vk~KMlyassk~~l~~~l~g~ 110 (132)
+..++..-|.--..|-+.|+|-
T Consensus 70 s~de~g~Aa~~aveLd~~lgg~ 91 (147)
T 1t44_G 70 SQDESGAAAIFTVQLDDYLNGR 91 (147)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC
T ss_pred ChhHHHHHHHHHHHHHHHcCCC
Confidence 9999988877777788888774
No 25
>3vbh_A EV71, genome polyprotein, capsid protein VP1; hand-foot-and-mouth disease, enterovirus uncoating, P factor, adaptor-sensor; HET: SPH; 2.30A {Human enterovirus 71} PDB: 3vbf_A* 3vbo_A 3vbs_A* 4aed_A* 3vbr_A 3vbu_A
Probab=52.43 E-value=19 Score=27.12 Aligned_cols=44 Identities=11% Similarity=0.188 Sum_probs=26.5
Q ss_pred HHHhhcCCCCCceeEEEeeeeec----CCCceeecEEEEEEcCCCCChhh
Q 040070 47 EDFTKSLPADECRHAVFDFDFTT----SENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 47 ~~~~~~L~~~~~rY~~~~~~~~~----~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
.++...|. --=|.-+|++++- ..+....-.+-|+|+|.+||+-.
T Consensus 117 ~QlRrKLe--~FTY~RfDlEvT~V~t~~~~~~~~~~~QvmyvPpGaP~p~ 164 (297)
T 3vbh_A 117 AQMRRKVE--LFTYMRFDAEFTFVACTPTGEVVPQLLQYMFVPPGAPKPD 164 (297)
T ss_dssp HHHHHHHT--TEEEEEEEEEEEEEEECTTSCCCCCEEEEEEECTTSCCCC
T ss_pred HHHHhhhc--eeEEEeeeeEEEEEEecCCCCCCceEEEEEEcCCCCCCCC
Confidence 34444452 2467778877752 12222334567999999999654
No 26
>1fmd_1 Foot-and-mouth disease virus (subunit VP1); icosahedral virus; 3.50A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1qgc_1 1qgc_5
Probab=51.63 E-value=21 Score=25.54 Aligned_cols=30 Identities=13% Similarity=0.331 Sum_probs=22.4
Q ss_pred CceeEEEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 57 ECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 57 ~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-.-|..+|++.+-. . -.-|+|+|.+||+..
T Consensus 68 ~FTY~rfDlEvtvv----~--~~qvmyvPpGaP~p~ 97 (208)
T 1fmd_1 68 AATYYFSDLEIAVT----H--TGKLTWVPNGAPVSA 97 (208)
T ss_dssp TEEEEEEEEEEEEE----E--EEEEEEECTTCCGGG
T ss_pred ccEEEeccEEEEEE----E--eeEEEEECCCCCchh
Confidence 34688888887632 1 158999999999875
No 27
>1qqp_1 FMDV, protein (genome polyprotein); heparan sulphate, virus-receptor interactions/protein carbohydrate interactions; HET: IDX SGN IDS; 1.90A {Foot-and-mouth disease virus} SCOP: b.121.4.1 PDB: 1bbt_1 1fod_1
Probab=50.46 E-value=12 Score=26.89 Aligned_cols=29 Identities=10% Similarity=0.290 Sum_probs=21.4
Q ss_pred ceeEEEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 58 CRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 58 ~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
.-|..+|++.+-. .. .-++|+|.+||+..
T Consensus 69 fTY~rfDlEvTvv----~~--~qvmwvPpGAP~p~ 97 (213)
T 1qqp_1 69 STYYFSDLEIAVK----HE--GDLTWVPNGAPEKA 97 (213)
T ss_dssp EEEEEEEEEEEEE----EE--SCEEEECTTCCGGG
T ss_pred cEEEeeeEEEEEE----Ec--cEEEEECCCCCCcc
Confidence 3588888887621 11 37999999999876
No 28
>1ncq_A Coat protein VP1; HRV, pleconaril, icosahedral virus; HET: W11; 2.50A {Human rhinovirus 14} SCOP: b.121.4.1 PDB: 1d3i_1* 1hrv_1* 1hri_1* 1na1_A* 1k5m_A* 1r08_1* 1r09_1* 1rvf_1 1vrh_1* 2hwb_1* 2hwc_1* 2r04_1* 2r06_1* 2r07_1* 2rm2_1* 2rr1_1* 2rs1_1* 2rs3_1* 2rs5_1* 4rhv_1 ...
Probab=49.95 E-value=22 Score=26.61 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=22.3
Q ss_pred eeEEEeeeeecC------CC--ceeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTTS------EN--VQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~~------~~--~~~~k~vfI~w~P~~a~vk~ 92 (132)
-|.-+|++++-- .+ ....-.+-|+|+|.+||+..
T Consensus 120 TY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 161 (289)
T 1ncq_A 120 TYVRFDSEYTILATASQPDSANYSSNLVVQAMYVPPGAPNPK 161 (289)
T ss_dssp EEEEEEEEEEEEEEEECCSCCSSCCCCEEEEEEECTTSCCCC
T ss_pred eEEcccEEEEEEEcCCccCCcccCCceEEEEEEeCCCCCCCc
Confidence 688888887621 01 02233467999999999764
No 29
>1tme_1 Theiler'S murine encephalomyelitis virus (subunit VP1); icosahedral virus; 2.80A {Theiler} SCOP: b.121.4.1 PDB: 1tmf_1
Probab=44.73 E-value=21 Score=26.53 Aligned_cols=34 Identities=18% Similarity=0.234 Sum_probs=22.4
Q ss_pred ceeEEEeeeeecCCCceeecEEEEEEcCCCCChh
Q 040070 58 CRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVR 91 (132)
Q Consensus 58 ~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk 91 (132)
.-|.-+|++.+-.......-.+-|+|+|.+||+.
T Consensus 120 FTY~rfDLEvTvv~~~~~~~~~qvmyvPpGaP~p 153 (274)
T 1tme_1 120 FTYYKCDLEVTVSALGTDTVASVLRWAPTGAPAD 153 (274)
T ss_dssp EEEEEEEEEEEEEECSCSCCEEEEEEECTTCCCC
T ss_pred ceEecccEEEEEEEcCCCCceEEEEEcCCCCCCC
Confidence 3688888887632111112346799999999987
No 30
>1z7s_1 Human coxsackievirus A21; picornavirus, capsid protein, viral protein, icosahedral virus; HET: MYR G; 3.20A {Human coxsackievirus A21} PDB: 1z7z_1*
Probab=44.37 E-value=30 Score=26.03 Aligned_cols=34 Identities=18% Similarity=0.369 Sum_probs=21.9
Q ss_pred eeEEEeeeeecC------CCc---eeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTTS------ENV---QKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~~------~~~---~~~k~vfI~w~P~~a~vk~ 92 (132)
-|.-||++.+-- .+. ...-.+-|+|+|.+||+..
T Consensus 121 TY~RfDlEvT~V~t~~~~~~~~~~~~~~~~qvmyvPpGAP~p~ 163 (298)
T 1z7s_1 121 TYSRFDLEMTFVFTENYPSTASGEVRNQVYQIMYIPPGAPRPS 163 (298)
T ss_dssp EEEEEEEEEEEEEEEECCSSCCCCCCCCEEEEEEECTTSCCCS
T ss_pred eEEeccEEEEEEEcccccCCcccCCCceEEEEEEcCCCCCCCC
Confidence 688888887611 110 1112457999999999765
No 31
>3tu5_B Gelsolin, protein cordon-BLeu, thymosin beta-4; unusual hairpin conformation in the D-loop, structural prote binding protein complex; HET: ATP; 3.00A {Homo sapiens}
Probab=43.58 E-value=1e+02 Score=23.05 Aligned_cols=85 Identities=9% Similarity=0.133 Sum_probs=52.6
Q ss_pred HHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCCC
Q 040070 10 KFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASR 89 (132)
Q Consensus 10 a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~ 89 (132)
||+..... .-.-|.+|++- +.+.|.+. ....+=..+ ||++..- |....| +..+..-+|+...++
T Consensus 25 ~~~~~g~~--~Gl~iWrIe~~-~~~~v~~~---------~~G~Fy~gd-~Yivl~t-~~~~~g--~~~~~i~~W~G~~ss 88 (297)
T 3tu5_B 25 EFLKAGKE--PGLQIWRVEKF-DLVPVPTN---------LYGDFFTGD-AYVILKT-VQLRNG--NLQYDLHYWLGNECS 88 (297)
T ss_dssp HHHHTTSS--SEEEEEEEETT-EEEECCGG---------GTTEEETTC-EEEEEEE-EECTTS--CEEEEEEEEECTTCC
T ss_pred hHhccCCC--CceEEEEEcCC-EEEECCHH---------HcCeecCCC-eEEEeEe-EECCCC--ceeEEEEEEeCCCCC
Confidence 56554443 33677888773 33333322 122333455 5766532 222222 456778899999999
Q ss_pred hhhhhHhHhhHHHHHhhcCCe
Q 040070 90 VRSKMVYASSKDRFKRELDGI 110 (132)
Q Consensus 90 vk~KMlyassk~~l~~~l~g~ 110 (132)
.-++..-|.--..|-..|+|-
T Consensus 89 ~de~g~aa~~av~Ld~~lgg~ 109 (297)
T 3tu5_B 89 QDESGAAAIFTVQLDDYLNGR 109 (297)
T ss_dssp HHHHHHHHHHHHHHHHHTTTC
T ss_pred hhHHHHHHHHHHHHHHHcCCC
Confidence 999988887777888899873
No 32
>2wzr_1 Polyprotein; capsid, RNA replication, RNA-directed RNA polymerase, nucleotidyltransferase, HOST cytoplasmic vesicle, capsid protein; 3.00A {Foot-and-mouth disease virus}
Probab=42.28 E-value=16 Score=26.35 Aligned_cols=31 Identities=16% Similarity=0.392 Sum_probs=21.7
Q ss_pred CceeEEEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 57 ECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 57 ~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-.-|..+|++.+--.. . .-|+|+|.+||+..
T Consensus 69 ~FTY~rfDlEvtiv~~----~-~qvmyvPpGaP~p~ 99 (219)
T 2wzr_1 69 AATYYFSDLEVACVGT----N-AWVGWTPNGSPVLT 99 (219)
T ss_dssp TEEEEEEEEEEEEESS----C-SCCEEECTTCCCCS
T ss_pred ecEEEeccEEEEEEec----C-CEEEEECCCCCCCc
Confidence 3468888888762111 1 37999999999876
No 33
>1d4m_1 Protein (coxsackievirus A9); picornavirus structure, RGD, uncoating, virus-receptor interaction, WIN compound, virus/viral protein; HET: MYR W71; 2.90A {Human coxsackievirus A9} SCOP: b.121.4.1 PDB: 1h8t_A* 1upn_A 2c8i_A 1m11_1 2x5i_A* 3iyp_A*
Probab=41.87 E-value=27 Score=26.31 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=21.8
Q ss_pred eeEEEeeeeecCC-----------CceeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTTSE-----------NVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~~~-----------~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-|.-||++.+--. +....-..-|+|+|.+||+..
T Consensus 111 TY~RfDlEvT~V~t~~~~~~t~~~~~~~~~~~qvmyvPpGAP~p~ 155 (299)
T 1d4m_1 111 TYLRFDMEVTFVITSRQDPGTTLAQDMPVLTHQIMYVPPGGPIPA 155 (299)
T ss_dssp EEEEEEEEEEEEEEEEECCCSCCCCCCCCCEEEEEEECTTSCCCS
T ss_pred eEEeceEEEEEEEcccccccccccCCCCceEEEEEECCCCCCCCC
Confidence 5888888876210 001122357999999999765
No 34
>1ev1_1 Echovirus 1; viral coat protein, capsid, picornavirus, icosahedral virus; HET: MYR PLM; 3.55A {Human echovirus 1} SCOP: b.121.4.1
Probab=40.66 E-value=29 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.170 Sum_probs=21.8
Q ss_pred eeEEEeeeeecCC-----------CceeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTTSE-----------NVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~~~-----------~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-|.-||++.+--. +....-..-|+|+|.+||+..
T Consensus 111 TY~RfDlEvT~V~t~~~~~~t~~~~~~~~~~~qvmyvPpGaP~p~ 155 (281)
T 1ev1_1 111 TYLRFDMEITVVITSSQDQSTSQNQNAPVLTHQIMYVPPGGPIPV 155 (281)
T ss_dssp EEEEEEEEEEEEEEEEECCSTTTTCCCCCCEEEEEEECTTSCCCC
T ss_pred eEEeccEEEEEEEcccccccccccCCCCceEEEEEEcCCCCCCCc
Confidence 5888888876210 011122357999999999765
No 35
>1zba_1 Coat protein VP1; oligosaccharide receptor, virus/viral protein, icosahedral V virus; HET: SGN IDS; 2.00A {Foot-and-mouth disease virus} PDB: 1zbe_1
Probab=40.41 E-value=21 Score=25.55 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=21.9
Q ss_pred CceeEEEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 57 ECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 57 ~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-.-|..+|++.+-. .. .-++|+|.+||+..
T Consensus 68 ~FTY~rfDlEvtvv----~~--~qvmyvPpGAP~p~ 97 (212)
T 1zba_1 68 AATYYFSDLEIVVR----HD--GNLTWVPNGAPEAA 97 (212)
T ss_dssp TEEEEEEEEEEEEE----EE--SCEEEECTTCCGGG
T ss_pred cceEEeeeEEEEEE----Ee--eEEEEECCCCCcch
Confidence 34688889887631 11 47999999999874
No 36
>2mev_1 Mengo virus coat protein (subunit VP1); cardio picornavirus coat protein, icosahedral virus; 3.00A {Mengo virus} SCOP: b.121.4.1 PDB: 1mec_1
Probab=38.71 E-value=24 Score=26.26 Aligned_cols=33 Identities=15% Similarity=0.341 Sum_probs=20.8
Q ss_pred eeEEEeeeeecCCCceeecEEEEEEcCCCCChh
Q 040070 59 RHAVFDFDFTTSENVQKSKIFFIAWAPDASRVR 91 (132)
Q Consensus 59 rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk 91 (132)
-|..+|++.+--......--.-|+|+|.+||+.
T Consensus 121 TY~rfDLEvtvv~~~~~~~~~~vmyvPpGaP~~ 153 (277)
T 2mev_1 121 VYYKCDLEVTLSPHTSGAHGLLVRWCPTGTPTK 153 (277)
T ss_dssp SEEEEEEEEEEEESCSSCCCEEEEEECTTSCCC
T ss_pred eEecccEEEEEEEcCCCCcceEEEECCCCCCCC
Confidence 688888887632110011123599999999985
No 37
>1bev_1 Bovine enterovirus coat proteins VP1 to VP4; bovine enterovirus VG-5-27, picornavirus, icosahedral virus; HET: MYR; 3.00A {Bovine enterovirus} SCOP: b.121.4.1
Probab=38.46 E-value=41 Score=25.03 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=21.9
Q ss_pred eeEEEeeeeec---CC-----CceeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTT---SE-----NVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~---~~-----~~~~~k~vfI~w~P~~a~vk~ 92 (132)
-|.-+|++.+- .. +....-.+-|+|+|.+||+..
T Consensus 113 TY~RfDlEvT~V~t~~~~~~~~~~~~~~~qvmyvPpGaP~p~ 154 (281)
T 1bev_1 113 TYMRFDVEFTIIATSSTGQNVTTEQHTTYQVMYVPPGAPVPS 154 (281)
T ss_dssp EEEEEEEEEEEEEECBCTTSCBCCCCCEEEEEEECTTSCCCC
T ss_pred eEEcCCEEEEEEEcCCcccCCCCCCceEEEEEEcCCCCCCCc
Confidence 68888888762 10 111122457999999999764
No 38
>2ff3_A Gelsolin; protein-protein complex, structural protein/contractIle protein complex; HET: ATP; 2.00A {Homo sapiens} SCOP: d.109.1.1 PDB: 2ff6_G*
Probab=37.64 E-value=91 Score=20.86 Aligned_cols=86 Identities=9% Similarity=0.100 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCC
Q 040070 9 LKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDAS 88 (132)
Q Consensus 9 ~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a 88 (132)
.+|++... ....-|.+|++. +.+.|.+.. ...|=+.+ ||++.. .|.... .+....+-+|+...|
T Consensus 28 ~~f~~~g~--~~gl~VWrIe~~-~~v~vp~~~---------~G~FysgD-~YIVl~-ty~~~~--g~~~~~IyfW~G~~s 91 (150)
T 2ff3_A 28 PEFLKAGK--EPGLQIWRVEKF-DLVPVPTNL---------YGDFFTGD-AYVILK-TVQLRN--GNLQYDLHYWLGNEC 91 (150)
T ss_dssp HHHHHTTS--SSEEEEEEEETT-EEEECCGGG---------TTEEETTS-EEEEEE-EEECTT--SSEEEEEEEEECTTC
T ss_pred hhhhccCC--CCCeEEEEEeCC-EEEECChHH---------cCeecCCC-eEEEEE-EEecCC--CceEEEEEEEeCCCC
Confidence 46776554 356788999863 333333211 12344455 466532 232222 255678899999999
Q ss_pred ChhhhhHhHhhHHHHHhhcCCe
Q 040070 89 RVRSKMVYASSKDRFKRELDGI 110 (132)
Q Consensus 89 ~vk~KMlyassk~~l~~~l~g~ 110 (132)
+..++..-|.--..|-+.|+|.
T Consensus 92 s~de~gaAA~~aveLd~~lgg~ 113 (150)
T 2ff3_A 92 SQDESGAAAIFTVQLDDYLNGR 113 (150)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTC
T ss_pred CchhHHHHHHHHHHHHHHcCCC
Confidence 9999988777777788888774
No 39
>1aym_1 HRV16, human rhinovirus 16 coat protein; RNA, site-directed mutagenesis, icosahedral virus; HET: MYR DAO; 2.15A {Human rhinovirus SP} SCOP: b.121.4.1 PDB: 1ayn_1* 1c8m_1* 1ncr_A* 1nd2_A* 1nd3_A* 1qju_1* 1qjx_1* 1qjy_1* 1d3e_1 1fpn_1* 1v9u_1* 3dpr_A* 3tn9_1 1r1a_1* 2hwd_1* 2hwe_1* 2hwf_1*
Probab=36.86 E-value=29 Score=25.95 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=21.2
Q ss_pred eeEEEeeeeecCC------CceeecEEEEEEcCCCCChhh
Q 040070 59 RHAVFDFDFTTSE------NVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 59 rY~~~~~~~~~~~------~~~~~k~vfI~w~P~~a~vk~ 92 (132)
=|.-||++++--. +....-..-|+|+|.+||+-.
T Consensus 114 TY~RfDlEvT~V~t~~~~~~~~~~~~~qvmyvPPGap~p~ 153 (285)
T 1aym_1 114 TYARFDSEITMVPSVAAKDGHIGHIVMQYMYVPPGAPIPT 153 (285)
T ss_dssp EEEEEEEEEEEEEEEEESSSCCCCCEEEEEEECTTSCCCS
T ss_pred eEEecCEEEEEEEecCcCCCCCCceEEEEEEcCCCCCCCC
Confidence 4777888775211 111112457999999999765
No 40
>1hxs_1 Genome polyprotein, coat protein VP1; picornavirus, AB initio phase DETE icosahedral virus; HET: MYR PLM; 2.20A {Human poliovirus 1} SCOP: b.121.4.1 PDB: 1nn8_1 1pov_1* 1asj_1* 1po1_1* 1po2_1* 1ar9_1* 1vbd_1* 1al2_1* 1ar7_1* 1ar8_1* 1ar6_1* 2plv_1* 3epc_1* 1dgi_1 3iyb_1 3iyc_1 1eah_1* 1xyr_1 3epf_1* 1pvc_1* ...
Probab=36.63 E-value=36 Score=25.63 Aligned_cols=15 Identities=20% Similarity=0.521 Sum_probs=12.4
Q ss_pred EEEEEEcCCCCChhh
Q 040070 78 IFFIAWAPDASRVRS 92 (132)
Q Consensus 78 ~vfI~w~P~~a~vk~ 92 (132)
.+-|+|+|.+||+-.
T Consensus 154 ~~QvmyvPPGap~p~ 168 (302)
T 1hxs_1 154 VYQIMYVPPGAPVPE 168 (302)
T ss_dssp EEEEEEECTTSCCCS
T ss_pred EEEEEEeCCCCCCCC
Confidence 467999999999764
No 41
>2ws9_1 P1; 3.00A {Equine rhinitis a virus} PDB: 2wff_1 2xbo_1*
Probab=33.19 E-value=34 Score=24.92 Aligned_cols=36 Identities=11% Similarity=0.377 Sum_probs=22.7
Q ss_pred ceeEEEeeeeecCCCce------eecEEEEEEcCCCCChhhh
Q 040070 58 CRHAVFDFDFTTSENVQ------KSKIFFIAWAPDASRVRSK 93 (132)
Q Consensus 58 ~rY~~~~~~~~~~~~~~------~~k~vfI~w~P~~a~vk~K 93 (132)
.-|..+|++.+--.... ...++-|+|+|.+||+-..
T Consensus 75 FTY~rfDlEvtvv~t~~~~~~~~~~~~~qvmyvPpGaP~p~~ 116 (246)
T 2ws9_1 75 CTYFFSDLELSIQFKFTTTPSSVGEGFVWVKWFPVGAPTKTT 116 (246)
T ss_dssp SSEEECCEEEEECCEESSCGGGCSSCEEEEEEECTTCCCCCC
T ss_pred cEEeeccEEEEEEEcCCCcccccccceeEEEEECCCCCcCcc
Confidence 35888888876321100 0122579999999997654
No 42
>2ygw_A Malonyl-COA decarboxylase, mitochondrial; lyase; 2.80A {Homo sapiens}
Probab=32.49 E-value=22 Score=28.43 Aligned_cols=34 Identities=3% Similarity=-0.020 Sum_probs=26.0
Q ss_pred CCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEE
Q 040070 43 QASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIA 82 (132)
Q Consensus 43 ~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~ 82 (132)
-.+|+|+..-|.++.-||++|.... +..++|||-
T Consensus 191 I~~W~DLkrRL~pdRRCfaFFHp~m------P~EPLIfVe 224 (460)
T 2ygw_A 191 VKNWMDMKRRVGPYRRCYFFSHCST------PGEPLVVLH 224 (460)
T ss_dssp CCSHHHHHHHTSTTEEEEEEEETTB------TTCCSEEEE
T ss_pred cCCHHHHHHhcCCCCeEEEecCCCC------CCCCeEEEe
Confidence 3689999999988888999997653 244666663
No 43
>3cji_A Polyprotein; virus capsid protein structure, ATP-binding, cytoplasm, cytoplasmic vesicle, helicase, hydrolase, membrane, nucleotide-binding; 2.30A {Seneca valley virus}
Probab=29.81 E-value=31 Score=25.48 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=21.5
Q ss_pred ceeEEEeeeeecCCCceeecEEEEEEcCCCCChhh
Q 040070 58 CRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRS 92 (132)
Q Consensus 58 ~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~ 92 (132)
.-|.-+|++.+--... ..-.+-|+|+|.+||+-.
T Consensus 116 FTY~rfDlEvTvv~~~-~~~~~qvmyvPpGaP~p~ 149 (263)
T 3cji_A 116 FTYFRSDLEVTVVSLE-PDLEFAVGWFPSGSEYQA 149 (263)
T ss_dssp EEEEEEEEEEEEEESS-TTCCCEEEEECTTCCCCC
T ss_pred ceEeeccEEEEEEECC-CCcEEEEEEeCCCCCCcc
Confidence 3688888877521110 112356999999999654
No 44
>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1
Probab=29.55 E-value=1e+02 Score=19.15 Aligned_cols=55 Identities=15% Similarity=0.288 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeE
Q 040070 6 ECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHA 61 (132)
Q Consensus 6 e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~ 61 (132)
++..++.++..-.+.+..+.-++.+.+.+.+.=.|. +.+|+++.+.+..-.+.-.
T Consensus 23 d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~-~id~d~I~~~IE~~Gg~IH 77 (97)
T 2raq_A 23 EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGN-DLDFDEITRAIESYGGSIH 77 (97)
T ss_dssp HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECS-SCCHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEec-CCCHHHHHHHHHHcCCeEE
Confidence 445556666655568888889999888887765564 6899999988876555433
No 45
>2vik_A Villin 14T; actin-binding protein, capping protein, calcium-binding protein, cytoskeletal protein; NMR {Gallus gallus} SCOP: d.109.1.1 PDB: 2vil_A
Probab=27.72 E-value=1.2e+02 Score=19.41 Aligned_cols=82 Identities=11% Similarity=0.139 Sum_probs=51.2
Q ss_pred HhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEEEEEcCCCCChhhh
Q 040070 14 LKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSK 93 (132)
Q Consensus 14 lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vfI~w~P~~a~vk~K 93 (132)
|-.......-|.+|++. +.+.|.+.. ...+-..+| |++.. .+. ..| +...+.-+|....|+..++
T Consensus 10 ~~d~~~~~l~vWrIe~~-~~~~vp~~~---------~G~Fy~gd~-YIvl~-t~~-~~g--~~~~~i~~W~G~~ss~de~ 74 (126)
T 2vik_A 10 KLDKTTPGIQIWRIENM-EMVPVPTKS---------YGNFYEGDC-YVLLS-TRK-TGS--GFSYNIHYWLGKNSSQDEQ 74 (126)
T ss_dssp SSCSSCCEEEEEECGGG-SCCEECTTT---------TTCCCSSSC-EEEEE-EEE-CSS--SEEEEEEEEECTTSCHHHH
T ss_pred CcCcCCCCEEEEEEeCC-EEEECChhh---------cCeeCCCCe-EEEEE-ecc-CCC--ceeEEEEEEeCCCCCchhH
Confidence 33333456677777753 333333211 123445554 66654 232 222 4567889999999999999
Q ss_pred hHhHhhHHHHHhhcCCe
Q 040070 94 MVYASSKDRFKRELDGI 110 (132)
Q Consensus 94 Mlyassk~~l~~~l~g~ 110 (132)
..-|.--..|-+.|+|-
T Consensus 75 g~Aa~~aveLd~~lgg~ 91 (126)
T 2vik_A 75 GAAAIYTTQMDEYLGSV 91 (126)
T ss_dssp HHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHcCCC
Confidence 88887777788888773
No 46
>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*
Probab=25.15 E-value=1.2e+02 Score=21.98 Aligned_cols=48 Identities=21% Similarity=0.277 Sum_probs=20.8
Q ss_pred CcEEEEEEEe-CCCcEEEEeecCCC-CCChHHHhhcCCCCCceeEEEeee
Q 040070 19 NHRFIVFKID-EKIQQVTVERVGSP-QASYEDFTKSLPADECRHAVFDFD 66 (132)
Q Consensus 19 ~~~~ii~~i~-~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~~rY~~~~~~ 66 (132)
++.+.-|+|- .++.+|..+-..++ ..........++++..||+-|.|.
T Consensus 85 ~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~ 134 (240)
T 4goj_C 85 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFT 134 (240)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEEC
T ss_pred CcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecC
Confidence 4888899994 44455544322111 122223345677788899999885
No 47
>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*
Probab=24.07 E-value=1.6e+02 Score=20.63 Aligned_cols=49 Identities=22% Similarity=0.280 Sum_probs=24.1
Q ss_pred CcEEEEEEE-eCCCcEEEEeecCCC-CCChHHHhhcCCCCCceeEEEeeee
Q 040070 19 NHRFIVFKI-DEKIQQVTVERVGSP-QASYEDFTKSLPADECRHAVFDFDF 67 (132)
Q Consensus 19 ~~~~ii~~i-~~~~~~i~v~~~~~~-~~~~~~~~~~L~~~~~rY~~~~~~~ 67 (132)
++.+.-|+| +.++++|..+-.-++ .....+....++++..|++-|.+..
T Consensus 40 ~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~ 90 (195)
T 3gqq_A 40 KIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTP 90 (195)
T ss_dssp CCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCG
T ss_pred eeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCH
Confidence 478888888 455556654432222 1122334566778899999999863
No 48
>2eo2_A Adult MALE hypothalamus cDNA, riken FULL-length enriched library, clone:A230045M11...; FTHFSDC1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=22.60 E-value=45 Score=19.60 Aligned_cols=17 Identities=24% Similarity=0.462 Sum_probs=13.5
Q ss_pred EEEcCCCCCCHHHHhhh
Q 040070 114 LQATDPSEMSLDIIKGR 130 (132)
Q Consensus 114 i~~~d~~dl~~~~i~~~ 130 (132)
|.-+||++|++|.+..-
T Consensus 42 I~ktdP~~LT~eEi~~F 58 (71)
T 2eo2_A 42 IHKTDPSTLTEEEVRKF 58 (71)
T ss_dssp CCCCSTTTCCHHHHHHH
T ss_pred CCCCCcccCCHHHHhhc
Confidence 35589999999998653
No 49
>3ffv_A Protein SYD; membrane, translocon, secyeg, nanodisc, cell inner membrane, cell membrane, protein binding; 2.00A {Escherichia coli}
Probab=20.74 E-value=76 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.327 Sum_probs=21.2
Q ss_pred EEEEeCCCcEEEEeecCCC-----CCChHHHhhcCC
Q 040070 24 VFKIDEKIQQVTVERVGSP-----QASYEDFTKSLP 54 (132)
Q Consensus 24 i~~i~~~~~~i~v~~~~~~-----~~~~~~~~~~L~ 54 (132)
+..+++.+.+|.++..|.. ..++.+|++.|.
T Consensus 143 lIsv~N~sGeV~LE~~G~~~~~vLA~sLaeFL~~L~ 178 (181)
T 3ffv_A 143 VISVCNLSGEVCKETLGTRKRTHLASNLAEFLNQLK 178 (181)
T ss_dssp EEEEETTTCCEEEEETTSSCEEEEESSHHHHHHHCE
T ss_pred EEEEECCCCeEEEEeCCCCcceehhhCHHHHHHhCc
Confidence 3456666677877776643 357888888875
Done!