BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040072
(354 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta
pdb|3ZHP|B Chain B, Human Mst3 (stk24) In Complex With Mo25beta
Length = 340
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/282 (43%), Positives = 190/282 (67%), Gaps = 2/282 (0%)
Query: 54 VLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDT 113
+L G+++ EP +A QL +E + L LIA L + ++D T + N+ R+++ T
Sbjct: 55 ILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGT 114
Query: 114 KLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSF 173
+ Y+ A+ I+ L+ GYE +AL G + RECIRH+ +A+ +L S + FF +
Sbjct: 115 RSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKY 174
Query: 174 LQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVK 233
+++ FDIASDA ATFK+LLTRHK VA+FL +NYD F++Y +LL+S +Y+TKR ++K
Sbjct: 175 VELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLK 233
Query: 234 LLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEI 293
LLG+++LDR N A+M KY+S +N++++MNLLRD + NIQFE+FHVFK+FVA+ +K I
Sbjct: 234 LLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPI 293
Query: 294 ISVLIANRSKLLRFFSDFNIDRA-NEQFEADKLLVIREIATL 334
+ +L+ N+ KL+ F S F +R +EQF +K +I++I L
Sbjct: 294 VEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDL 335
>pdb|3GNI|A Chain A, Structure Of Strad And Mo25
pdb|2WTK|A Chain A, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
pdb|2WTK|D Chain D, Structure Of The Heterotrimeric Lkb1-Stradalpha-Mo25alpha
Complex
Length = 341
Score = 236 bits (602), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/282 (43%), Positives = 189/282 (67%), Gaps = 2/282 (0%)
Query: 54 VLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDT 113
+L+G+++ EP +A QL +E + L L+A L + ++D + N+ R+++ T
Sbjct: 53 ILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGT 112
Query: 114 KLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSF 173
+ Y+ +I+ L+ GYE ++AL G + RECIRH+ +A+ +L SE FF +
Sbjct: 113 RTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRY 172
Query: 174 LQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVK 233
+++ FDIASDA ATFK+LLTRHK AEFL ++YD FF EY +LL S +Y+TKR ++K
Sbjct: 173 VEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLK 231
Query: 234 LLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEI 293
LLG++LLDR N +M KY+S +N++++MNLLRD ++NIQFE+FHVFK+FVAN NK I
Sbjct: 232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI 291
Query: 294 ISVLIANRSKLLRFFSDFNIDRA-NEQFEADKLLVIREIATL 334
+ +L+ N++KL+ F S F DR +EQF +K ++++I L
Sbjct: 292 LDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333
>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal
Peptide Of Strad
pdb|1UPL|A Chain A, Crystal Structure Of Mo25 Alpha
pdb|1UPL|B Chain B, Crystal Structure Of Mo25 Alpha
Length = 341
Score = 214 bits (546), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 184/282 (65%), Gaps = 2/282 (0%)
Query: 54 VLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDT 113
+L+G+++ EP +A QL +E + L L+A L + ++D + N+ R+++ T
Sbjct: 53 ILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGT 112
Query: 114 KLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSF 173
+ Y+ +I+ L+ GYE ++AL G RECIRH+ +A+ +L SE FF +
Sbjct: 113 RTPTVEYICTQQNILFXLLKGYESPEIALNCGIXLRECIRHEPLAKIILWSEQFYDFFRY 172
Query: 174 LQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVK 233
++ FDIASDA ATFK+LLTRHK AEFL ++YD FF EY +LL S +Y+TKR ++K
Sbjct: 173 VEXSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEY-EKLLHSENYVTKRQSLK 231
Query: 234 LLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEI 293
LLG++LLDR N + KY+S +N+++ NLLRD ++NIQFE+FHVFK+FVAN NK I
Sbjct: 232 LLGELLLDRHNFTIXTKYISKPENLKLXXNLLRDKSRNIQFEAFHVFKVFVANPNKTQPI 291
Query: 294 ISVLIANRSKLLRFFSDFNIDRA-NEQFEADKLLVIREIATL 334
+ +L+ N++KL+ F S F DR +EQF +K ++++I L
Sbjct: 292 LDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,754,018
Number of Sequences: 62578
Number of extensions: 301517
Number of successful extensions: 723
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 715
Number of HSP's gapped (non-prelim): 5
length of query: 354
length of database: 14,973,337
effective HSP length: 100
effective length of query: 254
effective length of database: 8,715,537
effective search space: 2213746398
effective search space used: 2213746398
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)