Query 040072
Match_columns 354
No_of_seqs 122 out of 232
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 04:49:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040072.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040072hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08569 Mo25: Mo25-like; Int 100.0 1E-126 2E-131 934.9 26.8 332 1-336 1-335 (335)
2 KOG1566 Conserved protein Mo25 100.0 9E-122 2E-126 882.7 30.1 339 1-339 1-341 (342)
3 KOG1566 Conserved protein Mo25 91.0 0.33 7.1E-06 48.7 4.9 185 125-322 38-254 (342)
4 cd00020 ARM Armadillo/beta-cat 83.1 2.8 6E-05 33.1 5.1 106 166-278 8-113 (120)
5 PF08064 UME: UME (NUC010) dom 81.1 1.6 3.5E-05 36.6 3.1 79 201-287 2-85 (107)
6 KOG1525 Sister chromatid cohes 79.5 69 0.0015 38.0 16.3 260 9-292 16-337 (1266)
7 cd00020 ARM Armadillo/beta-cat 77.7 20 0.00044 28.1 8.5 97 138-238 21-118 (120)
8 PF08767 CRM1_C: CRM1 C termin 76.8 70 0.0015 31.7 13.7 159 80-239 72-243 (319)
9 KOG0946 ER-Golgi vesicle-tethe 76.1 72 0.0016 36.2 14.4 143 42-198 77-245 (970)
10 PLN03200 cellulose synthase-in 74.1 1.3E+02 0.0029 37.6 17.1 191 71-280 438-633 (2102)
11 PF10508 Proteasom_PSMB: Prote 72.6 1.3E+02 0.0028 31.6 17.1 158 125-289 201-370 (503)
12 KOG0946 ER-Golgi vesicle-tethe 68.8 32 0.00068 38.8 9.7 164 65-277 21-187 (970)
13 PLN03200 cellulose synthase-in 63.7 56 0.0012 40.6 11.3 199 75-290 526-728 (2102)
14 PF12717 Cnd1: non-SMC mitotic 62.3 64 0.0014 28.9 9.1 82 166-252 64-152 (178)
15 PTZ00446 vacuolar sorting prot 61.0 16 0.00034 34.3 4.9 28 1-28 1-41 (191)
16 PF10508 Proteasom_PSMB: Prote 59.6 65 0.0014 33.9 9.8 157 124-288 75-234 (503)
17 PF12717 Cnd1: non-SMC mitotic 56.1 24 0.00053 31.6 5.2 84 181-281 4-88 (178)
18 PF03224 V-ATPase_H_N: V-ATPas 55.7 44 0.00095 32.6 7.4 108 167-279 107-221 (312)
19 PF01602 Adaptin_N: Adaptin N 54.4 42 0.00092 34.2 7.3 227 34-280 1-255 (526)
20 PF12783 Sec7_N: Guanine nucle 54.1 1.5E+02 0.0033 26.0 10.1 78 162-243 70-149 (168)
21 smart00802 UME Domain in UVSB 50.9 17 0.00038 30.7 3.2 78 201-286 2-84 (107)
22 KOG1655 Protein involved in va 50.5 58 0.0013 31.0 6.8 69 1-78 1-71 (218)
23 PF05952 ComX: Bacillus compet 50.0 11 0.00024 28.8 1.7 19 117-135 5-23 (57)
24 PF08569 Mo25: Mo25-like; Int 47.8 47 0.001 33.5 6.3 142 162-313 73-219 (335)
25 PF12348 CLASP_N: CLASP N term 44.7 23 0.00049 32.2 3.2 204 89-305 17-227 (228)
26 KOG1992 Nuclear export recepto 44.2 1E+02 0.0022 35.2 8.4 23 201-224 225-247 (960)
27 KOG1058 Vesicle coat complex C 43.8 3.8E+02 0.0082 30.7 12.6 224 49-307 39-301 (948)
28 KOG0166 Karyopherin (importin) 39.1 2E+02 0.0044 31.0 9.5 116 72-192 357-484 (514)
29 PF13646 HEAT_2: HEAT repeats; 35.9 18 0.00039 27.5 1.0 52 218-283 7-58 (88)
30 PF13646 HEAT_2: HEAT repeats; 34.3 55 0.0012 24.8 3.5 44 211-269 32-75 (88)
31 PF15087 DUF4551: Protein of u 34.2 2.4E+02 0.0052 31.1 9.3 209 15-239 374-613 (617)
32 PF06757 Ins_allergen_rp: Inse 32.8 1E+02 0.0023 27.8 5.6 65 155-225 22-89 (179)
33 cd00256 VATPase_H VATPase_H, r 31.8 5.5E+02 0.012 27.0 11.2 62 211-277 144-208 (429)
34 PF04388 Hamartin: Hamartin pr 30.2 2.5E+02 0.0054 31.0 8.8 72 166-240 5-97 (668)
35 KOG3666 Uncharacterized conser 28.8 9.3E+02 0.02 27.6 15.1 109 42-155 666-782 (1141)
36 PF14680 FANCI_HD2: FANCI heli 28.1 55 0.0012 31.4 3.0 47 144-213 35-84 (234)
37 PF01365 RYDR_ITPR: RIH domain 27.9 1.4E+02 0.003 27.3 5.6 53 181-240 115-169 (207)
38 KOG2056 Equilibrative nucleosi 27.5 3.1E+02 0.0068 28.0 8.3 46 62-107 36-81 (336)
39 cd03572 ENTH_epsin_related ENT 27.3 4.2E+02 0.009 23.1 8.7 88 62-152 15-110 (122)
40 KOG1991 Nuclear transport rece 27.2 1.1E+03 0.023 27.8 14.1 93 166-267 124-233 (1010)
41 PF06393 BID: BH3 interacting 26.9 1.1E+02 0.0023 29.0 4.5 72 39-116 83-166 (196)
42 PF03224 V-ATPase_H_N: V-ATPas 26.3 2.1E+02 0.0045 27.8 6.8 64 177-245 69-139 (312)
43 PF01417 ENTH: ENTH domain; I 26.3 1.3E+02 0.0027 25.4 4.7 88 58-152 14-112 (125)
44 PF07304 SRA1: Steroid recepto 25.7 1.5E+02 0.0032 26.7 5.2 41 41-81 67-107 (157)
45 PF00514 Arm: Armadillo/beta-c 24.5 1.2E+02 0.0026 20.3 3.4 37 71-107 4-40 (41)
46 PF05804 KAP: Kinesin-associat 24.1 2.6E+02 0.0057 31.2 7.7 93 176-274 204-308 (708)
47 PF12552 DUF3741: Protein of u 23.3 78 0.0017 23.2 2.4 19 292-310 25-43 (46)
48 KOG3230 Vacuolar assembly/sort 22.2 5.2E+02 0.011 24.8 8.1 65 1-77 1-67 (224)
49 KOG1104 Nuclear cap-binding co 21.3 1.2E+02 0.0025 34.1 4.3 87 90-181 325-428 (759)
50 KOG2219 Uncharacterized conser 20.9 4.6E+02 0.0099 29.5 8.4 123 3-184 10-133 (864)
51 PHA02800 hypothetical protein; 20.6 5.6E+02 0.012 23.5 7.7 84 132-216 44-138 (161)
52 KOG0166 Karyopherin (importin) 20.2 1E+03 0.022 25.8 10.8 118 69-193 311-435 (514)
No 1
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=100.00 E-value=1.1e-126 Score=934.87 Aligned_cols=332 Identities=54% Similarity=0.888 Sum_probs=293.9
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcH
Q 040072 1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDT 80 (354)
Q Consensus 1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (354)
|+||||++||||+|+||+++|+|.+|+ + ..++++++..|||+|+|++||+||+|++|++|++|+|+|||+|+|++|+
T Consensus 1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~--~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl 77 (335)
T PF08569_consen 1 MSFLFKKKPKTPAELVRSLREALEKLD-S--KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL 77 (335)
T ss_dssp -----------HHHHHHHHHHHHHHHH-S--S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred CCCCcCCCCCCHHHHHHHHHHHHHHhc-c--ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence 999999999999999999999999997 2 2456677778999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCc-chhHHhhhc-hhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHH
Q 040072 81 LRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKL-IACTYLEAN-FDIMDTLILGYEDGDVALTYGAIARECIRHQSVA 158 (354)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLRecik~e~la 158 (354)
+..||.+|++||||+|||+++||++++|+++++++ |+|+||++| |||+++|+.||++||+|++||.|||||+|||++|
T Consensus 78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~ 157 (335)
T PF08569_consen 78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA 157 (335)
T ss_dssp HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999 999999999 9999999999999999999999999999999999
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 040072 159 RYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDI 238 (354)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgel 238 (354)
++||++++||+||+|++.++||||||||+||+++||+||++||+||.+|||+||+.|| +||+|+|||||||||||||||
T Consensus 158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el 236 (335)
T PF08569_consen 158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL 236 (335)
T ss_dssp HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred hcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-cc
Q 040072 239 LLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-AN 317 (354)
Q Consensus 239 Lldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~D 317 (354)
|+||+|++||+|||+|++|||+||+||+|+||+||+||||||||||||||||+||++||.+||+|||+||.+|++|+ +|
T Consensus 237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D 316 (335)
T PF08569_consen 237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDD 316 (335)
T ss_dssp HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-
T ss_pred HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred cccHHHHHHHHHHHhcCCC
Q 040072 318 EQFEADKLLVIREIATLDL 336 (354)
Q Consensus 318 eqF~dEK~~lI~~I~~L~~ 336 (354)
+||.|||++||++|++|||
T Consensus 317 ~qf~~EK~~li~~i~~L~~ 335 (335)
T PF08569_consen 317 EQFEDEKAYLIKQIESLPP 335 (335)
T ss_dssp CHHHHHHHHHHHHHHT---
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 9999999999999999986
No 2
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=100.00 E-value=9.1e-122 Score=882.65 Aligned_cols=339 Identities=51% Similarity=0.834 Sum_probs=333.2
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcH
Q 040072 1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDT 80 (354)
Q Consensus 1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl 80 (354)
|++||+++||||+|+||.+||.|.+++..++..+.|+++++|||+|++..+|+|+||++|.+|.+|+|+||++|+|+.|+
T Consensus 1 M~~~f~k~~ktP~d~Vr~~rd~l~~~~~~~~l~~~~~~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~ 80 (342)
T KOG1566|consen 1 MFFLFKKSPKTPADVVRRTRDKLKFLDKVRDLLDHKREKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADV 80 (342)
T ss_pred CCCccCCCCCCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCc
Confidence 89999999999999999999999999998767889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCC-chhhhhHhHHHHHHHhHHHHHH
Q 040072 81 LRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYED-GDVALTYGAIARECIRHQSVAR 159 (354)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~-~dial~~G~mLRecik~e~la~ 159 (354)
+.+||.++|+++||+|||+++||++++||++|+|+|+|+|+++|||+++.|+.||++ +|+|++||+|||||+|||.+|+
T Consensus 81 l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~Lak 160 (342)
T KOG1566|consen 81 LSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAK 160 (342)
T ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999996 9999999999999999999999
Q ss_pred HHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072 160 YVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239 (354)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL 239 (354)
++|+|++||+||.||+.|+||||||||+|||++||+||.+|||||.+||||||.+|+++|++|+||||||||+||||++|
T Consensus 161 iiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~ll 240 (342)
T KOG1566|consen 161 IILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELL 240 (342)
T ss_pred HHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999997779999999999999999999999
Q ss_pred cccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-ccc
Q 040072 240 LDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-ANE 318 (354)
Q Consensus 240 ldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~De 318 (354)
+||+|+.+|++||++|+|||+||+||||+|||||+||||||||||||||||+||.+||.+||+||++|+.+|++|+ +|+
T Consensus 241 ldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~q~V~~IL~~Nr~KLl~~l~~f~~d~~~De 320 (342)
T KOG1566|consen 241 LDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKPQPVRDILVRNRPKLLELLHDFHTDRTEDE 320 (342)
T ss_pred hCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCCchHHHHHHhCcHHHHHHHHHhCCCCCchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccHHHHHHHHHHHhcCCCCCC
Q 040072 319 QFEADKLLVIREIATLDLNET 339 (354)
Q Consensus 319 qF~dEK~~lI~~I~~L~~~~~ 339 (354)
||.|||+|+|+||++|++.+.
T Consensus 321 qF~dEk~~~i~eI~~l~~~~~ 341 (342)
T KOG1566|consen 321 QFLDEKAYLIKEIRQLKRLDS 341 (342)
T ss_pred hhhhhHHHHHHHHHhcccccC
Confidence 999999999999999987754
No 3
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=91.04 E-value=0.33 Score=48.65 Aligned_cols=185 Identities=16% Similarity=0.211 Sum_probs=122.1
Q ss_pred hhHHHHHHhhcCCchhhhhHhHHHHHHHhHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcCh---hHH
Q 040072 125 FDIMDTLILGYEDGDVALTYGAIARECIRHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHK---STV 200 (354)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk---~lv 200 (354)
-++++.+.+||..+...+...+..+.-...- .|+.-+-.+..+.....++..-.||---|+...|.-++.++. ..+
T Consensus 38 ~k~~eevsk~l~~~k~il~Gn~e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~t 117 (342)
T KOG1566|consen 38 EKAVEEVSKNLDMLKSILYGNDEAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPT 117 (342)
T ss_pred HHHHHHHHHHHhhhHHheeCCCCCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchH
Confidence 5666666667766666665555555444322 244444455566777777777788888888888888887664 567
Q ss_pred HHHHHhhHHHHH---HHHH---HhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcce
Q 040072 201 AEFLSKNYDWFF---QEYN---SQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQF 274 (354)
Q Consensus 201 aefl~~Nyd~Ff---~~yn---~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~ 274 (354)
++||..|.+-.+ ..|. ...|+++|.+..--+-+.|++++|.-.|+.-.-.||..|.. + |..
T Consensus 118 v~Yl~t~~e~~~~lv~~~~~~~~iaL~cg~mlrEcirhe~LakiiL~s~~~~~FF~~vq~p~F-d------------ias 184 (342)
T KOG1566|consen 118 VEYLETNPEILDNLVKGYENTPEIALTCGNMLRECIRHEFLAKIILESTNFEKFFLYVQLPNF-D------------IAS 184 (342)
T ss_pred HHHHHhCHHHHHHHHhhhccchHHHHHHHHHHHHHHhhHHHHHHHHcchhHHHHHHHHhccch-H------------HHH
Confidence 788887755433 2221 24677888877777778899999999999999999888765 4 346
Q ss_pred ecceeeee------------eeeCCCCC-hHHHHHHHHhHH---------HHHHHhhcCCCCCcccccHH
Q 040072 275 ESFHVFKL------------FVANQNKP-PEIISVLIANRS---------KLLRFFSDFNIDRANEQFEA 322 (354)
Q Consensus 275 EAFhvFKv------------FVANP~K~-~~I~~IL~~Nr~---------kLl~fl~~f~~d~~DeqF~d 322 (354)
+||..||- |..||+.. +++..-|.+|+. -|..+|-+=++...+.++..
T Consensus 185 dA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYis 254 (342)
T KOG1566|consen 185 DAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYIS 254 (342)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhc
Confidence 77777773 45577666 666666666653 23344444455456666666
No 4
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=83.06 E-value=2.8 Score=33.15 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=74.7
Q ss_pred hHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccH
Q 040072 166 HMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNS 245 (354)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~ 245 (354)
.+..+.+.+..++-++-..|..++..+-...+.....++..+ ++... ..++.++|+-.++.++..|+.|..+..
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~---~i~~l-~~~l~~~~~~v~~~a~~~L~~l~~~~~-- 81 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAG---GLPAL-VQLLKSEDEEVVKAALWALRNLAAGPE-- 81 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCC---ChHHH-HHHHhCCCHHHHHHHHHHHHHHccCcH--
Confidence 344455566666678888999999887666677777777643 34444 367888999999999999999986543
Q ss_pred HHHHHHhcChhhHHHHHHHhccCCcCcceecce
Q 040072 246 AVMVKYVSSLDNMRILMNLLRDSNKNIQFESFH 278 (354)
Q Consensus 246 ~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFh 278 (354)
.... .+-+..-+..+..+|.+.+..++-.|..
T Consensus 82 ~~~~-~~~~~g~l~~l~~~l~~~~~~~~~~a~~ 113 (120)
T cd00020 82 DNKL-IVLEAGGVPKLVNLLDSSNEDIQKNATG 113 (120)
T ss_pred HHHH-HHHHCCChHHHHHHHhcCCHHHHHHHHH
Confidence 2222 3334457888999998887666554443
No 5
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=81.10 E-value=1.6 Score=36.56 Aligned_cols=79 Identities=15% Similarity=0.251 Sum_probs=57.2
Q ss_pred HHHHHhhHHHHHHHHHHhhcc---CCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhcc--CCcCccee
Q 040072 201 AEFLSKNYDWFFQEYNSQLLE---SSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRD--SNKNIQFE 275 (354)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~Ll~---s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d--~sk~Iq~E 275 (354)
++||..|+=..+..+|..|.. +..|..|+++++=|++++- .+..||+.. +=-||..|+. ..+.++.+
T Consensus 2 ~~fL~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~------~~~~~i~~~--~pQI~a~L~sal~~~~l~~~ 73 (107)
T PF08064_consen 2 ADFLQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIK------LGGSHISSA--RPQIMACLQSALEIPELREE 73 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHH------HhHHHHHHH--HHHHHHHHHHHhCChhhHHH
Confidence 679999987777777766666 7999999999999999993 333444332 1224444443 34578999
Q ss_pred cceeeeeeeeCC
Q 040072 276 SFHVFKLFVANQ 287 (354)
Q Consensus 276 AFhvFKvFVANP 287 (354)
|+.++..||-+=
T Consensus 74 al~~W~~fi~~L 85 (107)
T PF08064_consen 74 ALSCWNCFIKTL 85 (107)
T ss_pred HHHHHHHHHHHC
Confidence 999999998643
No 6
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=79.52 E-value=69 Score=37.97 Aligned_cols=260 Identities=15% Similarity=0.170 Sum_probs=150.7
Q ss_pred CCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHH-HHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHh
Q 040072 9 PKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLL-EMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIAS 87 (354)
Q Consensus 9 ~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~-~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (354)
+=|-.|+++.|++...-|.+... +. .. .+.+.+... -++..+....+.+ .+|--..|-.|+|+. .
T Consensus 16 ~~s~~ell~rLk~l~~~l~~~~q--d~--~~-~~~~~pl~~~l~~~~~L~h~d~d------vrllvacCvseilRi---~ 81 (1266)
T KOG1525|consen 16 PISKDELLKRLKKLANCLASLDQ--DN--LD-LASLLPLADHLIKDFLLKHKDKD------VRLLVACCVSEILRI---Y 81 (1266)
T ss_pred cccHHHHHHHHHHHHHHHhhccc--Cc--hh-HHHHHHHHHHHhhHHHhcCCCcC------hhHHHHHHHHHHHHH---h
Confidence 45667888888877665554321 11 00 123333333 2355555554444 344455555555554 4
Q ss_pred CCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhh--------c-------------------CCchh
Q 040072 88 LPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILG--------Y-------------------EDGDV 140 (354)
Q Consensus 88 l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--------Y-------------------~~~di 140 (354)
-|.+||+.- +...||..++++.-|=.-+.--|.-+++.|+.+|... + ..|..
T Consensus 82 aPeaPy~~~-~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~ 160 (1266)
T KOG1525|consen 82 APEAPYTDE-QLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKK 160 (1266)
T ss_pred CCCCCCcHH-HHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHH
Confidence 578888766 8889999999877443333445555556665555221 1 23333
Q ss_pred hhhHhHHHHHHHhHH-----HHHHHHhcc----------------------------hhHHHhhhhccCCCchhhhhHHH
Q 040072 141 ALTYGAIARECIRHQ-----SVARYVLES----------------------------EHMKKFFSFLQIPNFDIASDAQA 187 (354)
Q Consensus 141 al~~G~mLRecik~e-----~la~~iL~~----------------------------~~f~~fF~yv~~~~FdiasDAf~ 187 (354)
..+.+.|++..|--. .+...+|++ +....|+.-.-...+-.-+.-..
T Consensus 161 v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~ 240 (1266)
T KOG1525|consen 161 VFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKI 240 (1266)
T ss_pred HHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhh
Confidence 344555555554322 222333322 12334443211222224455556
Q ss_pred HHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhcc
Q 040072 188 TFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRD 267 (354)
Q Consensus 188 Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d 267 (354)
.+.+++-.+..++.+-|..=.. ++- .=|.|+|=-+|-++++|+|.++.+....-. =..++-.+....-+.|
T Consensus 241 ~~he~i~~L~~~~p~ll~~vip----~l~-~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~----~~~~~~~~~fl~r~~D 311 (1266)
T KOG1525|consen 241 KYHELILELWRIAPQLLLAVIP----QLE-FELLSEQEEVRLKAVKLVGRMFSDKDSQLS----ETYDDLWSAFLGRFND 311 (1266)
T ss_pred HHHHHHHHHHHhhHHHHHHHHH----HHH-HHHhcchHHHHHHHHHHHHHHHhcchhhhc----ccchHHHHHHHHHhcc
Confidence 6666666666666665554222 221 236788889999999999999988875433 3367778888999999
Q ss_pred CCcCcceecceeeeeeeeC-CCCChH
Q 040072 268 SNKNIQFESFHVFKLFVAN-QNKPPE 292 (354)
Q Consensus 268 ~sk~Iq~EAFhvFKvFVAN-P~K~~~ 292 (354)
.+-.+++|..-.=|.+.+| |.-...
T Consensus 312 ~~~~vR~~~v~~~~~~l~~~~~~~~~ 337 (1266)
T KOG1525|consen 312 ISVEVRMECVESIKQCLLNNPSIAKA 337 (1266)
T ss_pred CChhhhhhHHHHhHHHHhcCchhhhH
Confidence 9999999999888887764 444333
No 7
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=77.70 E-value=20 Score=28.11 Aligned_cols=97 Identities=13% Similarity=0.115 Sum_probs=69.7
Q ss_pred chhhhhHhHHHHHHHhH-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHH
Q 040072 138 GDVALTYGAIARECIRH-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYN 216 (354)
Q Consensus 138 ~dial~~G~mLRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn 216 (354)
++.-..+-..|..+..+ +.....++..+.+..+.+++..++-++.-.|..++..+....+.....+...+ +.....
T Consensus 21 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g---~l~~l~ 97 (120)
T cd00020 21 ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAG---GVPKLV 97 (120)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCC---ChHHHH
Confidence 45555555556665555 77777888878888888888888999999999999999776554333343332 344443
Q ss_pred HhhccCCCcchhhhhHHHHHHH
Q 040072 217 SQLLESSSYITKRHAVKLLGDI 238 (354)
Q Consensus 217 ~~Ll~s~NYVtkRQSLKLLgel 238 (354)
+++.+++.=++++++-+|+.|
T Consensus 98 -~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 98 -NLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred -HHHhcCCHHHHHHHHHHHHHh
Confidence 677788888999999888876
No 8
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=76.77 E-value=70 Score=31.71 Aligned_cols=159 Identities=14% Similarity=0.135 Sum_probs=91.2
Q ss_pred HHHHHHHhCCCCCCCcch-hHHHHHHHHhhcccCCCcchhHHhhhc--hhHHHHHHhhc-CCchhhhhHhHHHHHHHhHH
Q 040072 80 TLRLLIASLPKLAMGPRR-DATHVVANLQRQRVDTKLIACTYLEAN--FDIMDTLILGY-EDGDVALTYGAIARECIRHQ 155 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RK-dv~~If~~llr~~~~~~~p~v~Yl~~~--peil~~L~~gY-~~~dial~~G~mLRecik~e 155 (354)
++..++.-...-..++|- .|-.+++.+.++-.+.-.|.+.-+..+ --++.++-..+ +.||....+=.+||-++++-
T Consensus 72 l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~ 151 (319)
T PF08767_consen 72 LLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHC 151 (319)
T ss_dssp HHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHh
Confidence 344444444444555565 445566666654322222222222221 11223333334 47999999999999999873
Q ss_pred HHHHHHhcchhHHHhhhhc----cCCCchhhhhHHHHHHHHHhcCh----hHHHHHHHhhHHHHHHHHHHhhccCC-Ccc
Q 040072 156 SVARYVLESEHMKKFFSFL----QIPNFDIASDAQATFKELLTRHK----STVAEFLSKNYDWFFQEYNSQLLESS-SYI 226 (354)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv----~~~~FdiasDAf~Tfkellt~Hk----~lvaefl~~Nyd~Ff~~yn~~Ll~s~-NYV 226 (354)
.-+=.-|..+.|..+++.+ +.++-+|+..++.++.++++.-. ..+.+|..+.|-.+..+.=.-|..+. ...
T Consensus 152 f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~g 231 (319)
T PF08767_consen 152 FPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYYLDILQDIFSVLTDSDHKSG 231 (319)
T ss_dssp THHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGG
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHH
Confidence 3222236667777777765 57999999999999999999543 45568888777666665433343333 223
Q ss_pred hhhhhHHHHHHHh
Q 040072 227 TKRHAVKLLGDIL 239 (354)
Q Consensus 227 tkRQSLKLLgelL 239 (354)
-+.|+ .+|..|+
T Consensus 232 f~~q~-~iL~~Lf 243 (319)
T PF08767_consen 232 FKLQS-QILSNLF 243 (319)
T ss_dssp HHHHH-HHHHHHH
T ss_pred HHHHH-HHHHHHH
Confidence 33333 5666666
No 9
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.10 E-value=72 Score=36.17 Aligned_cols=143 Identities=22% Similarity=0.265 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhhhccCCC------CC-CChHHHHHHHHHHHhh-cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCC
Q 040072 42 SELSKLLLEMRTVLFGSDQ------SE-PNADACEQLTREFFKE-DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDT 113 (354)
Q Consensus 42 ~eisK~L~~mK~il~G~~e------~e-p~~e~~~qLa~ei~~~-dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~ 113 (354)
.|+-|+.-..=-|+...+| .+ .+.+.-.++|..+++. |.+..|+..+...||-.|.-..++++++++.+
T Consensus 77 ~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r--- 153 (970)
T KOG0946|consen 77 PEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCR--- 153 (970)
T ss_pred HHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcC---
Confidence 3455555544455555443 11 2344567888888655 89999999999999999999999999999855
Q ss_pred CcchhHH-hhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHH-------------HHHHhcchhHHHhhhhccC---
Q 040072 114 KLIACTY-LEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSV-------------ARYVLESEHMKKFFSFLQI--- 176 (354)
Q Consensus 114 ~~p~v~Y-l~~~peil~~L~~gY~~~dial~~G~mLRecik~e~l-------------a~~iL~~~~f~~fF~yv~~--- 176 (354)
.+-++- |..+|--+..|+.--.+. ||-||.|.+ -+.+-..-.|..+|+-++.
T Consensus 154 -~~e~q~~ll~~P~gIS~lmdlL~Ds----------rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg 222 (970)
T KOG0946|consen 154 -PTELQDALLVSPMGISKLMDLLRDS----------REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGG 222 (970)
T ss_pred -CHHHHHHHHHCchhHHHHHHHHhhh----------hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444 566777776666543221 334444432 2222233356666666642
Q ss_pred -CCchhhhhHHHHHHHHHhcChh
Q 040072 177 -PNFDIASDAQATFKELLTRHKS 198 (354)
Q Consensus 177 -~~FdiasDAf~Tfkellt~Hk~ 198 (354)
..==|.-|++.-+.-||..|-+
T Consensus 223 ~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 223 LDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred CCCcchHHHHHHHHHHHHhhCcc
Confidence 2223567888888888887753
No 10
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=74.06 E-value=1.3e+02 Score=37.57 Aligned_cols=191 Identities=18% Similarity=0.170 Sum_probs=127.8
Q ss_pred HHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhh-c--hhHHHHHHhhcCCchhhhhHhHH
Q 040072 71 LTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEA-N--FDIMDTLILGYEDGDVALTYGAI 147 (354)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~--peil~~L~~gY~~~dial~~G~m 147 (354)
..+.+...+.+..|+..|..=+-+.|+.+.....++-.....++ .-+.. . |-++..|-.| ++++--.+-..
T Consensus 438 ~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr----~aIieaGaIP~LV~LL~s~--~~~iqeeAawA 511 (2102)
T PLN03200 438 LWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESK----WAITAAGGIPPLVQLLETG--SQKAKEDSATV 511 (2102)
T ss_pred HHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH----HHHHHCCCHHHHHHHHcCC--CHHHHHHHHHH
Confidence 44566677788999999887677778877777777754222222 11212 1 4444444332 33333333333
Q ss_pred HHHHHhHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcC-hhHHHHHHHhhHHHHHHHHHHhhccCCCc
Q 040072 148 ARECIRHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRH-KSTVAEFLSKNYDWFFQEYNSQLLESSSY 225 (354)
Q Consensus 148 LRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~H-k~lvaefl~~Nyd~Ff~~yn~~Ll~s~NY 225 (354)
|-.+..++ ...+.+.....+-.+.+.++.+++++-..|..++..+.... ...+ ..+- .|+.+++-
T Consensus 512 L~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I------------~~Lv-~LLlsdd~ 578 (2102)
T PLN03200 512 LWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATI------------SQLT-ALLLGDLP 578 (2102)
T ss_pred HHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHH------------HHHH-HHhcCCCh
Confidence 33323344 34444556677888888888888998888888887775432 2211 3342 67888888
Q ss_pred chhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 226 ITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 226 VtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
-++-.+++.||-++.--....+.+.-+.+..=+..+..||++.++.+|-+|..+.
T Consensus 579 ~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iL 633 (2102)
T PLN03200 579 ESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVL 633 (2102)
T ss_pred hHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHH
Confidence 8888899999999876677666666677778999999999999999999999554
No 11
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=72.65 E-value=1.3e+02 Score=31.63 Aligned_cols=158 Identities=16% Similarity=0.218 Sum_probs=108.6
Q ss_pred hhHHHHHHhhcCCch--hhhhHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHH------HHHHHHHhcC
Q 040072 125 FDIMDTLILGYEDGD--VALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQ------ATFKELLTRH 196 (354)
Q Consensus 125 peil~~L~~gY~~~d--ial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf------~Tfkellt~H 196 (354)
-.+++.++..+++.| +-++|-.||-+....+.-++||.....+.++.+.+..+.-|-...++ .-|-.+.+.+
T Consensus 201 sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~ 280 (503)
T PF10508_consen 201 SGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS 280 (503)
T ss_pred ccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC
Confidence 457778888888877 47789999999999999999999999898888887655444311122 2223333323
Q ss_pred hhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccC----CcCc
Q 040072 197 KSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDS----NKNI 272 (354)
Q Consensus 197 k~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~----sk~I 272 (354)
+.-+ ..-|..|..... .+++|.+-.-+=-++--||.|=....-..++ -...++.++.+|....+. +-.+
T Consensus 281 ~~~v----~~~~p~~~~~l~-~~~~s~d~~~~~~A~dtlg~igst~~G~~~L--~~~~~~~~~~~l~~~~~~~~~~~~~l 353 (503)
T PF10508_consen 281 PQEV----LELYPAFLERLF-SMLESQDPTIREVAFDTLGQIGSTVEGKQLL--LQKQGPAMKHVLKAIGDAIKSGSTEL 353 (503)
T ss_pred hHHH----HHHHHHHHHHHH-HHhCCCChhHHHHHHHHHHHHhCCHHHHHHH--HhhcchHHHHHHHHHHHHhcCCchHH
Confidence 3322 346777887776 7889999888888899999886555444444 455566666666555544 4446
Q ss_pred ceecceeeeeeeeCCCC
Q 040072 273 QFESFHVFKLFVANQNK 289 (354)
Q Consensus 273 q~EAFhvFKvFVANP~K 289 (354)
+.-+.|.|..+..++..
T Consensus 354 k~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 354 KLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 88889988888665543
No 12
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=68.77 E-value=32 Score=38.84 Aligned_cols=164 Identities=21% Similarity=0.237 Sum_probs=109.8
Q ss_pred hHHHHHHHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhh---cccCCCcchhHHhhhchhHHHHHHhhcCCchhh
Q 040072 65 ADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQR---QRVDTKLIACTYLEANFDIMDTLILGYEDGDVA 141 (354)
Q Consensus 65 ~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr---~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dia 141 (354)
.|.+..|..-+..+-+ +|-|||++.=.-.+-| -.+|.. -=+-+++.|-+-|.++|+.
T Consensus 21 aETI~kLcDRvessTL------------~eDRR~A~rgLKa~srkYR~~Vga~--------Gmk~li~vL~~D~~D~E~i 80 (970)
T KOG0946|consen 21 AETIEKLCDRVESSTL------------LEDRRDAVRGLKAFSRKYREEVGAQ--------GMKPLIQVLQRDYMDPEII 80 (970)
T ss_pred HhHHHHHHHHHhhccc------------hhhHHHHHHHHHHHHHHHHHHHHHc--------ccHHHHHHHhhccCCHHHH
Confidence 4556666666665543 3578888765444443 112211 1267888888889888876
Q ss_pred hhHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhcc
Q 040072 142 LTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLE 221 (354)
Q Consensus 142 l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~ 221 (354)
-.+=..+--.++|+. +-..+..+. .+.|-=.-|-|.|+..+..+.--+ ..++
T Consensus 81 k~~LdTl~il~~~dd-------------~~~v~dds~--qsdd~g~~iae~fik~qd~I~lll-------------~~~e 132 (970)
T KOG0946|consen 81 KYALDTLLILTSHDD-------------SPEVMDDST--QSDDLGLWIAEQFIKNQDNITLLL-------------QSLE 132 (970)
T ss_pred HHHHHHHHHHHhcCc-------------chhhcccch--hhhHHHHHHHHHHHcCchhHHHHH-------------HHHH
Confidence 555444444444433 112334555 566666777888887775554222 2233
Q ss_pred CCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecc
Q 040072 222 SSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESF 277 (354)
Q Consensus 222 s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAF 277 (354)
.-++-.||-+++||..+|..|. -++-..-+.+|--.--+|-+|+|..-.|+=||-
T Consensus 133 ~~DF~VR~~aIqLlsalls~r~-~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~i 187 (970)
T KOG0946|consen 133 EFDFHVRLYAIQLLSALLSCRP-TELQDALLVSPMGISKLMDLLRDSREPIRNEAI 187 (970)
T ss_pred hhchhhhhHHHHHHHHHHhcCC-HHHHHHHHHCchhHHHHHHHHhhhhhhhchhHH
Confidence 3457789999999999999998 577788899999999999999999999998886
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=63.72 E-value=56 Score=40.57 Aligned_cols=199 Identities=10% Similarity=0.129 Sum_probs=134.3
Q ss_pred HHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhh----hHhHHHHH
Q 040072 75 FFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVAL----TYGAIARE 150 (354)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial----~~G~mLRe 150 (354)
+.+.+.+..|+.-|..=+++.|+.+.....++.+..... .+ +.++.. +.+ +++.+-. ..|.|+-.
T Consensus 526 V~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~---~I------~~Lv~L-Lls-dd~~~~~~aL~vLgnIlsl 594 (2102)
T PLN03200 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAA---TI------SQLTAL-LLG-DLPESKVHVLDVLGHVLSV 594 (2102)
T ss_pred HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchh---HH------HHHHHH-hcC-CChhHHHHHHHHHHHHHhh
Confidence 345678888888888888999998888777776632111 11 222222 111 1222222 23444443
Q ss_pred HHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 040072 151 CIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRH 230 (354)
Q Consensus 151 cik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (354)
+-.++...........+..+.+.++.++=++--+|..++-.+.+.+++.....+..+- +.-.- .||.+++.-++++
T Consensus 595 ~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~aga---IpPLV-~LLss~~~~v~ke 670 (2102)
T PLN03200 595 ASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI---INPCI-KLLTNNTEAVATQ 670 (2102)
T ss_pred cchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCC---HHHHH-HHHhcCChHHHHH
Confidence 3344434443444566777888888888888899999999999999888777666542 22332 6899999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCC
Q 040072 231 AVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKP 290 (354)
Q Consensus 231 SLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~ 290 (354)
+-.-|+.+.. ....--..++-...-++.++.+|++++-.+.-+|-...--++..|.--
T Consensus 671 AA~AL~nL~~--~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~ 728 (2102)
T PLN03200 671 SARALAALSR--SIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVA 728 (2102)
T ss_pred HHHHHHHHHh--CCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHH
Confidence 9999999995 333332234456778999999999999999888888877777777543
No 14
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=62.32 E-value=64 Score=28.87 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=52.9
Q ss_pred hHHHhhhhccCCCchhhhhHHHHHHHHHhc-ChhHHHHHHHhhHHHHHHHHHHhhccC-----CCcchhhhhHHHHHHHh
Q 040072 166 HMKKFFSFLQIPNFDIASDAQATFKELLTR-HKSTVAEFLSKNYDWFFQEYNSQLLES-----SSYITKRHAVKLLGDIL 239 (354)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~-Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s-----~NYVtkRQSLKLLgelL 239 (354)
.|+.+...+.-++=+|.+-|-.-|.+++.+ ++.++ .+++-.....+| .-.+. .+.-.++.-.+.|-+.+
T Consensus 64 l~~~~l~~l~D~~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~-~~~~~~~~~~~~~~~~~~I~~fll~~i 138 (178)
T PF12717_consen 64 LFSRILKLLVDENPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLN-NCYEHPVYGPLSREKRKKIYKFLLDFI 138 (178)
T ss_pred hhHHHHHHHcCCCHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHh-CccccccccccCHHHHHHHHHHHHHHc
Confidence 458888888899999999999999999998 66555 444445555555 33332 33344455555555555
Q ss_pred c-ccccHHHHHHHh
Q 040072 240 L-DRSNSAVMVKYV 252 (354)
Q Consensus 240 l-dr~N~~vM~~Yi 252 (354)
. |+...++..|..
T Consensus 139 ~~d~~~~~l~~kl~ 152 (178)
T PF12717_consen 139 DKDKQKESLVEKLC 152 (178)
T ss_pred CcHHHHHHHHHHHH
Confidence 5 555555554443
No 15
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=60.98 E-value=16 Score=34.28 Aligned_cols=28 Identities=18% Similarity=0.158 Sum_probs=19.2
Q ss_pred CCCCCCCCCCC-------------hHHHHHHHHHHHHHhhc
Q 040072 1 MKGLFKPKPKT-------------PVELVKLTRELLLYANR 28 (354)
Q Consensus 1 M~~lFk~~~kt-------------P~elVr~l~e~l~~l~~ 28 (354)
|.|||+++.++ |.+-+-.+++++..|..
T Consensus 1 m~~~fgk~~~~~~~~~~~~~~~~~~~~AIl~Lk~~~~~L~k 41 (191)
T PTZ00446 1 MRFWFGKKKNSSECSDNKKKNNDEIYKAILKNREAIDALEK 41 (191)
T ss_pred CccccCCCCCCCcchhhhhccCCCHHHHHHHHHHHHHHHHH
Confidence 88999766444 45556677777777654
No 16
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=59.56 E-value=65 Score=33.90 Aligned_cols=157 Identities=16% Similarity=0.225 Sum_probs=110.2
Q ss_pred chhHHHHHHhhcCCchhhh--hHhHHHHHHHhHHHH-HHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHH
Q 040072 124 NFDIMDTLILGYEDGDVAL--TYGAIARECIRHQSV-ARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTV 200 (354)
Q Consensus 124 ~peil~~L~~gY~~~dial--~~G~mLRecik~e~l-a~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lv 200 (354)
-|++...|..|..+|+-.. .+=..|+-|+++... +..+...+.+-.+...+..++-+||..|...++.+.. |+.-.
T Consensus 75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~~ 153 (503)
T PF10508_consen 75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEGL 153 (503)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-CchhH
Confidence 5777777777776654333 222336667776665 5555556666677788999999999999999999986 45445
Q ss_pred HHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 201 AEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
+..+..|. ..+.. .|+..+|=+.|.+.+.++.++. ......+ .++.+..-+..+...|.++---+|.-|.-++
T Consensus 154 ~~l~~~~~---~~~L~-~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~-~~~~~sgll~~ll~eL~~dDiLvqlnalell 226 (503)
T PF10508_consen 154 EQLFDSNL---LSKLK-SLMSQSSDIVRCRVYELLVEIA--SHSPEAA-EAVVNSGLLDLLLKELDSDDILVQLNALELL 226 (503)
T ss_pred HHHhCcch---HHHHH-HHHhccCHHHHHHHHHHHHHHH--hcCHHHH-HHHHhccHHHHHHHHhcCccHHHHHHHHHHH
Confidence 55666664 45665 7888877788999999999996 3444444 5666667888888888886666677777776
Q ss_pred eeeeeCCC
Q 040072 281 KLFVANQN 288 (354)
Q Consensus 281 KvFVANP~ 288 (354)
.-....|+
T Consensus 227 ~~La~~~~ 234 (503)
T PF10508_consen 227 SELAETPH 234 (503)
T ss_pred HHHHcChh
Confidence 66655333
No 17
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=56.10 E-value=24 Score=31.57 Aligned_cols=84 Identities=19% Similarity=0.378 Sum_probs=64.3
Q ss_pred hhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhH-H
Q 040072 181 IASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNM-R 259 (354)
Q Consensus 181 iasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NL-k 259 (354)
|-+-|..++-++..+|+.+|..|+.. . | ..|.+++=..|++++..|..|++. -|+--...+ -
T Consensus 4 vR~n~i~~l~DL~~r~~~~ve~~~~~----l---~--~~L~D~~~~VR~~al~~Ls~Li~~--------d~ik~k~~l~~ 66 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYPNLVEPYLPN----L---Y--KCLRDEDPLVRKTALLVLSHLILE--------DMIKVKGQLFS 66 (178)
T ss_pred HHHHHHHHHHHHHHhCcHHHHhHHHH----H---H--HHHCCCCHHHHHHHHHHHHHHHHc--------CceeehhhhhH
Confidence 45678888999999999888666543 1 2 578888899999999999999864 355555666 6
Q ss_pred HHHHHhccCCcCcceecceeee
Q 040072 260 ILMNLLRDSNKNIQFESFHVFK 281 (354)
Q Consensus 260 liM~LL~d~sk~Iq~EAFhvFK 281 (354)
.++.+|.|+...|+--|=..|.
T Consensus 67 ~~l~~l~D~~~~Ir~~A~~~~~ 88 (178)
T PF12717_consen 67 RILKLLVDENPEIRSLARSFFS 88 (178)
T ss_pred HHHHHHcCCCHHHHHHHHHHHH
Confidence 7778888888888777765554
No 18
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=55.72 E-value=44 Score=32.55 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=54.4
Q ss_pred HHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHH
Q 040072 167 MKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSA 246 (354)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~ 246 (354)
+..|+...+.++=-|.-=|...+-.++...+.--...-..-..+||+... ..+++++-=...-++..|+++|-.+.+..
T Consensus 107 ~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~-~~l~~~~~~~~~~av~~L~~LL~~~~~R~ 185 (312)
T PF03224_consen 107 YSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLS-SQLSSSDSELQYIAVQCLQNLLRSKEYRQ 185 (312)
T ss_dssp HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH--TT-HHHH---HHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHH-HhhcCCCcchHHHHHHHHHHHhCcchhHH
Confidence 44555555555444445555555566654332222211222345665553 45554322222567899999996665555
Q ss_pred HHHHHhcChhhHHHHHHHh-----ccCCcCc--ceeccee
Q 040072 247 VMVKYVSSLDNMRILMNLL-----RDSNKNI--QFESFHV 279 (354)
Q Consensus 247 vM~~Yis~~~NLkliM~LL-----~d~sk~I--q~EAFhv 279 (354)
+ |+. .+.+..++.+| .+.+-++ |+++-.+
T Consensus 186 ~---f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~ 221 (312)
T PF03224_consen 186 V---FWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLC 221 (312)
T ss_dssp H---HHT-HHHHHHHHHHHH---------HHHHHHHHHHH
T ss_pred H---HHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHH
Confidence 4 555 89999999999 3344443 5565444
No 19
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=54.38 E-value=42 Score=34.16 Aligned_cols=227 Identities=14% Similarity=0.153 Sum_probs=0.0
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc----HHHHHHHhCCCCCCCcchhHHHHHHHHhhc
Q 040072 34 EKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED----TLRLLIASLPKLAMGPRRDATHVVANLQRQ 109 (354)
Q Consensus 34 ~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d----ll~~Li~~l~~L~fE~RKdv~~If~~llr~ 109 (354)
++|... .|+.|.+...+ .+.+-..+.+.+|........ .+..++..+..=+++.||-+...+..+...
T Consensus 1 ~~~~~~--~el~~~~~~~~------~~~~~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~ 72 (526)
T PF01602_consen 1 ERKRIS--QELAKILNSFK------IDISKKKEALKKLIYLMMLGYDISFLFMEVIKLISSKDLELKRLGYLYLSLYLHE 72 (526)
T ss_dssp HHHHHH--HHHHHHHHCSS------THHHHHHHHHHHHHHHHHTT---GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTT
T ss_pred CcchHH--HHHHHHHhcCC------CCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhc
Q ss_pred ccCCCcchhHHhhh---chh-HHHHH----HhhcCCchhhhhHhHHHHHHHhHH----------HHHHHHhcch-----h
Q 040072 110 RVDTKLIACTYLEA---NFD-IMDTL----ILGYEDGDVALTYGAIARECIRHQ----------SVARYVLESE-----H 166 (354)
Q Consensus 110 ~~~~~~p~v~Yl~~---~pe-il~~L----~~gY~~~dial~~G~mLRecik~e----------~la~~iL~~~-----~ 166 (354)
..+.-.-++.-+.. +|+ .+..+ +..-..++++-.....+..++.|+ .++++...+| .
T Consensus 73 ~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~ 152 (526)
T PF01602_consen 73 DPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE 152 (526)
T ss_dssp SHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG
T ss_pred chhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH
Q ss_pred -HHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccH
Q 040072 167 -MKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNS 245 (354)
Q Consensus 167 -f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~ 245 (354)
+..+.+.+.-++-.|.+.|...+.++ ...+.....++...+...- +++...+-..+...+++|+.+. +.+.
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~-----~~l~~~~~~~q~~il~~l~~~~--~~~~ 224 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILC-----QLLSDPDPWLQIKILRLLRRYA--PMEP 224 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHH-----HHHTCCSHHHHHHHHHHHTTST--SSSH
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhh-----hcccccchHHHHHHHHHHHhcc--cCCh
Q ss_pred HHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 246 AVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 246 ~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
.-... ...+..+..+|++.+..|.+||...+
T Consensus 225 ~~~~~----~~~i~~l~~~l~s~~~~V~~e~~~~i 255 (526)
T PF01602_consen 225 EDADK----NRIIEPLLNLLQSSSPSVVYEAIRLI 255 (526)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhH----HHHHHHHHHHhhccccHHHHHHHHHH
No 20
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=54.08 E-value=1.5e+02 Score=25.97 Aligned_cols=78 Identities=23% Similarity=0.343 Sum_probs=55.8
Q ss_pred hcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCC--cchhhhhHHHHHHHh
Q 040072 162 LESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSS--YITKRHAVKLLGDIL 239 (354)
Q Consensus 162 L~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~N--YVtkRQSLKLLgelL 239 (354)
+.++-...+...+..+.|.|..-+...|.-++.+++ .++..-.+.|+..+...++++++ |=.|.-+|..+.++.
T Consensus 70 lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~----~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l~ 145 (168)
T PF12783_consen 70 LKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFR----SHLKLELEVFLSHIILRILESDNSSLWQKELALEILRELC 145 (168)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHHH
Confidence 333333444455556679999999999999987665 35566678889887645888776 566667899999988
Q ss_pred cccc
Q 040072 240 LDRS 243 (354)
Q Consensus 240 ldr~ 243 (354)
-++.
T Consensus 146 ~~p~ 149 (168)
T PF12783_consen 146 KDPQ 149 (168)
T ss_pred hChh
Confidence 6654
No 21
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=50.93 E-value=17 Score=30.75 Aligned_cols=78 Identities=21% Similarity=0.347 Sum_probs=55.8
Q ss_pred HHHHHhhHHHHHHHHHHhhccCC---CcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhcc--CCcCccee
Q 040072 201 AEFLSKNYDWFFQEYNSQLLESS---SYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRD--SNKNIQFE 275 (354)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~Ll~s~---NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d--~sk~Iq~E 275 (354)
++||.+|.=..++.++..+..+. .|.-|+++++=+|+++- +|-.+|++.-= -||..|+. ..+.+|.+
T Consensus 2 ~~fL~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~------~~g~~i~~a~p--QI~acL~saL~~~eL~~~ 73 (107)
T smart00802 2 ADFLKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIK------LMGKHISSALP--QIMACLQSALEIPELRSL 73 (107)
T ss_pred hHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHH------HHHHHHHHHHH--HHHHHHHHHhCchhHHHH
Confidence 67899888777777776676666 88999999999999993 45555554322 34444433 23348999
Q ss_pred cceeeeeeeeC
Q 040072 276 SFHVFKLFVAN 286 (354)
Q Consensus 276 AFhvFKvFVAN 286 (354)
||.+..+||-.
T Consensus 74 al~~W~~~i~~ 84 (107)
T smart00802 74 ALRCWHVLIKT 84 (107)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 22
>KOG1655 consensus Protein involved in vacuolar protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.47 E-value=58 Score=30.99 Aligned_cols=69 Identities=28% Similarity=0.394 Sum_probs=43.1
Q ss_pred CCCCCC-CCCCChHHHHHHHHHHHHHhhccccchHhHHHHHH-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhh
Q 040072 1 MKGLFK-PKPKTPVELVKLTRELLLYANRTAETREKKREEKM-SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKE 78 (354)
Q Consensus 1 M~~lFk-~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~-~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~ 78 (354)
|.-+|+ ++||.|.- +|.++...++..+..-+.| -.++ .|++|+=.+|+.+=-| |...++.|=|-.+.+.
T Consensus 1 MnRiFG~~k~k~p~p---sL~dai~~v~~r~dSve~K-IskLDaeL~k~~~Qi~k~R~g-----paq~~~KqrAlrVLkQ 71 (218)
T KOG1655|consen 1 MNRIFGRGKPKEPPP---SLQDAIDSVNKRSDSVEKK-ISKLDAELCKYKDQIKKTRPG-----PAQNALKQRALRVLKQ 71 (218)
T ss_pred CcccccCCCCCCCCh---hHHHHHHHHHHhhhhHHHH-HHHHHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHHHHH
Confidence 677895 55788854 5566666665533222333 2233 6899999999988444 6666666666655544
No 23
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=50.03 E-value=11 Score=28.82 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.8
Q ss_pred hhHHhhhchhHHHHHHhhc
Q 040072 117 ACTYLEANFDIMDTLILGY 135 (354)
Q Consensus 117 ~v~Yl~~~peil~~L~~gY 135 (354)
.|.||..||+++.-|..|=
T Consensus 5 iV~YLv~nPevl~kl~~g~ 23 (57)
T PF05952_consen 5 IVNYLVQNPEVLEKLKEGE 23 (57)
T ss_pred HHHHHHHChHHHHHHHcCC
Confidence 4899999999999998774
No 24
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=47.80 E-value=47 Score=33.50 Aligned_cols=142 Identities=15% Similarity=0.218 Sum_probs=98.8
Q ss_pred hcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcCh---h-HHHHHHHhh-HHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 040072 162 LESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHK---S-TVAEFLSKN-YDWFFQEYNSQLLESSSYITKRHAVKLLG 236 (354)
Q Consensus 162 L~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk---~-lvaefl~~N-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLLg 236 (354)
+.+..+..+...+..-.||.--|+-..|.-++.+.. . .+.+||.+| -+-+..-. ..-. ...+-=.-|
T Consensus 73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~-----~gy~---~~dial~~g 144 (335)
T PF08569_consen 73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILL-----RGYE---NPDIALNCG 144 (335)
T ss_dssp HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHH-----HGGG---STTTHHHHH
T ss_pred HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHH-----HHhc---CccccchHH
Confidence 333444555556667779999999999999998753 2 467999999 44333222 2111 223333457
Q ss_pred HHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCC
Q 040072 237 DILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNI 313 (354)
Q Consensus 237 elLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~ 313 (354)
++|-+=.=++...+||=+.+.+..+......++=-|.-+||..||-...+ -.+-|.+.|..|=++...+..++..
T Consensus 145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~--hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR--HKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS--SHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 77766666778888888888999999999999999999999999975553 2357788999999888887766654
No 25
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=44.66 E-value=23 Score=32.25 Aligned_cols=204 Identities=16% Similarity=0.153 Sum_probs=88.4
Q ss_pred CCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhh--hhHhHHHHHHHhHHH--HHHHHhcc
Q 040072 89 PKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVA--LTYGAIARECIRHQS--VARYVLES 164 (354)
Q Consensus 89 ~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dia--l~~G~mLRecik~e~--la~~iL~~ 164 (354)
+.-+|+.|.++.+-...+++....... .-.|+..=.+++..+...-.+...+ -.+-..+.+++++-. +..+ -+
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~-~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~--~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDF-PPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY--AD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH--HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCcccc-HHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH--HH
Confidence 556777777777777777664411111 1222221124555555555443332 222222322222110 0000 00
Q ss_pred hhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHH-HHHHHHhhccCCCcchhhhhHHHHHHHhcccc
Q 040072 165 EHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWF-FQEYNSQLLESSSYITKRHAVKLLGDILLDRS 243 (354)
Q Consensus 165 ~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~F-f~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~ 243 (354)
..+-.+++-+..++=-|+..|-.++..+...-. . ..+. +.... ..+.+.|=-.|+.++.+|..++..-.
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~-~--------~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~~l~~~~ 163 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCS-Y--------SPKILLEILS-QGLKSKNPQVREECAEWLAIILEKWG 163 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS--H----------HHHHHHHH-HHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC-c--------HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence 111223333333333466667777766655221 0 1233 44443 67889999999999999998884433
Q ss_pred -cHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeee-eCCCCChHHHHHHHHhHHHHH
Q 040072 244 -NSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFV-ANQNKPPEIISVLIANRSKLL 305 (354)
Q Consensus 244 -N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV-ANP~K~~~I~~IL~~Nr~kLl 305 (354)
+...+..-..=+.-.+.++.+|.|.+..++-.|..+|-.|- .-|.+...+.+-|-.|..|.|
T Consensus 164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~l 227 (228)
T PF12348_consen 164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYL 227 (228)
T ss_dssp ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH---------------
T ss_pred chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccC
Confidence 12333222112567889999999999999998888887763 345555555544444444443
No 26
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=44.15 E-value=1e+02 Score=35.18 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=19.5
Q ss_pred HHHHHhhHHHHHHHHHHhhccCCC
Q 040072 201 AEFLSKNYDWFFQEYNSQLLESSS 224 (354)
Q Consensus 201 aefl~~Nyd~Ff~~yn~~Ll~s~N 224 (354)
-||+++|.+.|...|. ++++.+|
T Consensus 225 PEFFEdnm~~wM~~F~-k~l~~~~ 247 (960)
T KOG1992|consen 225 PEFFEDNMKTWMGAFH-KLLTYDN 247 (960)
T ss_pred hHHHHhhHHHHHHHHH-HHHhccC
Confidence 3899999999999997 8887554
No 27
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.81 E-value=3.8e+02 Score=30.67 Aligned_cols=224 Identities=17% Similarity=0.253 Sum_probs=113.8
Q ss_pred HHHHhhhccCCCCCCChHHHHHHHHHHH--hhc----HHHHHHHhCCCCCCCcch-hHHHHHHHHhhccc-----CCCcc
Q 040072 49 LEMRTVLFGSDQSEPNADACEQLTREFF--KED----TLRLLIASLPKLAMGPRR-DATHVVANLQRQRV-----DTKLI 116 (354)
Q Consensus 49 ~~mK~il~G~~e~ep~~e~~~qLa~ei~--~~d----ll~~Li~~l~~L~fE~RK-dv~~If~~llr~~~-----~~~~p 116 (354)
..||.++.---.+|+-|+..--+..... +.+ +|+.-....|+.+=+.+= .=..+..+.+|... =-|..
T Consensus 39 eamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~ 118 (948)
T KOG1058|consen 39 EAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGS 118 (948)
T ss_pred HHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcch
Confidence 3455443322233455555555555442 223 455556677887664332 22334444454321 12344
Q ss_pred hhHHhhh--chhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHHHHhcch-----hHHHhhhhccCCCchhhhhHHH--
Q 040072 117 ACTYLEA--NFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESE-----HMKKFFSFLQIPNFDIASDAQA-- 187 (354)
Q Consensus 117 ~v~Yl~~--~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~-----~f~~fF~yv~~~~FdiasDAf~-- 187 (354)
+..+|++ -||++.-|+. -+|.|+.|.- .|+=.+. .+++-|+++--..=|+..++..
T Consensus 119 TLRFLckLkE~ELlepl~p-------------~IracleHrh--sYVRrNAilaifsIyk~~~~L~pDapeLi~~fL~~e 183 (948)
T KOG1058|consen 119 TLRFLCKLKEPELLEPLMP-------------SIRACLEHRH--SYVRRNAILAIFSIYKNFEHLIPDAPELIESFLLTE 183 (948)
T ss_pred hhhhhhhcCcHHHhhhhHH-------------HHHHHHhCcc--hhhhhhhheeehhHHhhhhhhcCChHHHHHHHHHhc
Confidence 6888887 5888888864 3577775542 1111111 2233333332222223222222
Q ss_pred --------HHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHH-HHHHhccc--ccHHHHHHHhcChh
Q 040072 188 --------TFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKL-LGDILLDR--SNSAVMVKYVSSLD 256 (354)
Q Consensus 188 --------Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL-LgelLldr--~N~~vM~~Yis~~~ 256 (354)
-|--|++.-+..+-.||..|.|.+= .+|. +|.+ .-|++-+- .|-.--.|
T Consensus 184 ~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~-~~~~-------------~LqlViVE~Irkv~~~~p~~~~~------ 243 (948)
T KOG1058|consen 184 QDPSCKRNAFLMLFTTDPERALNYLLSNIDQIP-SFND-------------SLQLVIVELIRKVCLANPAEKAR------ 243 (948)
T ss_pred cCchhHHHHHHHHHhcCHHHHHHHHHhhHhhcc-CccH-------------HHHHHHHHHHHHHHhcCHHHhhH------
Confidence 2444667777777788888777632 2331 1111 12222111 12222223
Q ss_pred hHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHH----HHHH---HhHHHHHHH
Q 040072 257 NMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEII----SVLI---ANRSKLLRF 307 (354)
Q Consensus 257 NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~----~IL~---~Nr~kLl~f 307 (354)
..+.+|++|.+.|..+.|||---.=..-.+|.-=++-. +.+. .|+.|||-.
T Consensus 244 ~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvl 301 (948)
T KOG1058|consen 244 YIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVL 301 (948)
T ss_pred HHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhH
Confidence 36899999999999999999876655556665433322 2222 377777654
No 28
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.06 E-value=2e+02 Score=30.98 Aligned_cols=116 Identities=17% Similarity=0.182 Sum_probs=69.3
Q ss_pred HHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC--Cchhhh-------
Q 040072 72 TREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE--DGDVAL------- 142 (354)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial------- 142 (354)
++.+...++++.|+..|..=||..||.++-..+|+.. ++..--+.||.... ++.-|+.-.. +.++..
T Consensus 357 iqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts---~g~~~qi~yLv~~g-iI~plcdlL~~~D~~ii~v~Ld~l~ 432 (514)
T KOG0166|consen 357 IQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTS---SGTPEQIKYLVEQG-IIKPLCDLLTCPDVKIILVALDGLE 432 (514)
T ss_pred HHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcc---cCCHHHHHHHHHcC-CchhhhhcccCCChHHHHHHHHHHH
Confidence 4678888999999999999999999999999998875 33334477776654 4443333222 222222
Q ss_pred ---hHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHH
Q 040072 143 ---TYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKEL 192 (354)
Q Consensus 143 ---~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkel 192 (354)
-.|.+..+-=. +.++.+|=+.+...++-..=...|=||..-|+..+...
T Consensus 433 nil~~~e~~~~~~~-n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~y 484 (514)
T KOG0166|consen 433 NILKVGEAEKNRGT-NPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTY 484 (514)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHh
Confidence 22222221111 44555555556666554444445556665555544433
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=35.91 E-value=18 Score=27.52 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=41.8
Q ss_pred hhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeee
Q 040072 218 QLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLF 283 (354)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvF 283 (354)
.|..++|.-.|+.+++.|| .+.+++-+..+..+|+|++..|+..|.....-+
T Consensus 7 ~l~~~~~~~vr~~a~~~L~--------------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i 58 (88)
T PF13646_consen 7 LLQNDPDPQVRAEAARALG--------------ELGDPEAIPALIELLKDEDPMVRRAAARALGRI 58 (88)
T ss_dssp HHHTSSSHHHHHHHHHHHH--------------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC
T ss_pred HHhcCCCHHHHHHHHHHHH--------------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 3448999999999999999 344567788999999999999998887666544
No 30
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=34.30 E-value=55 Score=24.76 Aligned_cols=44 Identities=25% Similarity=0.441 Sum_probs=31.5
Q ss_pred HHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCC
Q 040072 211 FFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSN 269 (354)
Q Consensus 211 Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~s 269 (354)
....+- .++.++|..+|++++.-||.+ .+++-+..+..+|.+..
T Consensus 32 ~~~~L~-~~l~d~~~~vr~~a~~aL~~i--------------~~~~~~~~L~~~l~~~~ 75 (88)
T PF13646_consen 32 AIPALI-ELLKDEDPMVRRAAARALGRI--------------GDPEAIPALIKLLQDDD 75 (88)
T ss_dssp HHHHHH-HHHTSSSHHHHHHHHHHHHCC--------------HHHHTHHHHHHHHTC-S
T ss_pred HHHHHH-HHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCC
Confidence 345553 678999999999999999976 35556666666665543
No 31
>PF15087 DUF4551: Protein of unknown function (DUF4551)
Probab=34.23 E-value=2.4e+02 Score=31.07 Aligned_cols=209 Identities=21% Similarity=0.277 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHhhccccchHhHHHHHHH--HHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHhCCCCC
Q 040072 15 LVKLTRELLLYANRTAETREKKREEKMS--ELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLA 92 (354)
Q Consensus 15 lVr~l~e~l~~l~~~~~~~~~K~~~k~~--eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~ 92 (354)
+|..|.|.|..=....+ ...+.++ ++ +++=.+.|+=..++-.+|.+|+.=.+-.--+...-.++|..|| +-|.++
T Consensus 374 lv~~L~eyLp~s~~~~~-~q~~~qr-ADeL~~~i~i~qtL~lMFReTE~e~sRln~L~A~kg~l~~~LL~~Li-~~P~~p 450 (617)
T PF15087_consen 374 LVQTLHEYLPESRSKNG-LQNKSQR-ADELELCILIIQTLGLMFRETEVEPSRLNTLAAKKGALFSNLLVILI-CEPQIP 450 (617)
T ss_pred HHHHHHHhcccCcCccc-cccccch-HHHHHHHHHHHHHHHHHHhccccchhhHHHHHhhhhhhHHHHHHHHh-cCcccc
Confidence 47777776553221111 0111111 33 4666777888888998888885432222222333334443332 334443
Q ss_pred CCcch-hHHHHHHHHhhcccCCCcc--hhHHhhhchhHHHHH-Hh---h--cCCchhhhhHhHHHHHHHhHHHHHHHHhc
Q 040072 93 MGPRR-DATHVVANLQRQRVDTKLI--ACTYLEANFDIMDTL-IL---G--YEDGDVALTYGAIARECIRHQSVARYVLE 163 (354)
Q Consensus 93 fE~RK-dv~~If~~llr~~~~~~~p--~v~Yl~~~peil~~L-~~---g--Y~~~dial~~G~mLRecik~e~la~~iL~ 163 (354)
=-..- |+ +.-+. -.-..+.... ..+|+-+-..+|.-+ +- | ..+.+-.++.|-|+|..=-|
T Consensus 451 ~~~~~~~~-~~~~~-~~~~~d~elq~L~~EYtdaAtalLfEillv~~q~s~~~~~~~fl~i~Wi~~~Lq~~--------- 519 (617)
T PF15087_consen 451 KSCPPFDI-QLVAD-SSMSFDAELQKLLLEYTDAATALLFEILLVFQQGSLGLGSDKFLAISWIMRVLQSH--------- 519 (617)
T ss_pred ccCCcccc-ccccc-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCCchhHHHHHHHHhcC---------
Confidence 10000 00 00000 0000000000 144444433333322 11 1 12455566777777743333
Q ss_pred chhHHHhhhhccC-------CC---chhhhhHHHHHH---HHHh--cChhHHHHHHHhhHHHHHHHHHHhh--ccC---C
Q 040072 164 SEHMKKFFSFLQI-------PN---FDIASDAQATFK---ELLT--RHKSTVAEFLSKNYDWFFQEYNSQL--LES---S 223 (354)
Q Consensus 164 ~~~f~~fF~yv~~-------~~---FdiasDAf~Tfk---ellt--~Hk~lvaefl~~Nyd~Ff~~yn~~L--l~s---~ 223 (354)
|.+-.|..|+-. +. +=-.++|---|+ -|.+ .|.+-.|+|+.+||.+=|..|- +. ++. .
T Consensus 520 -p~~~~Fv~~~v~q~v~~LS~s~~~~LSp~qaVLlyQq~~iL~~cLq~s~~la~~ir~~yrEEFRYfI-~~p~lekKLP~ 597 (617)
T PF15087_consen 520 -PPLLSFVGRIVKQVVKVLSASQHEPLSPSQAVLLYQQFYILLSCLQYSKQLAEHIRNNYREEFRYFI-KMPCLEKKLPP 597 (617)
T ss_pred -CcHHHHHHHHHHHHHHHhcccccccCChhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhheeeee-cchhhHhhCCC
Confidence 334445555422 22 222345544333 3333 5777899999999998665553 33 222 6
Q ss_pred CcchhhhhHHHHHHHh
Q 040072 224 SYITKRHAVKLLGDIL 239 (354)
Q Consensus 224 NYVtkRQSLKLLgelL 239 (354)
-|=..+..++|++|+|
T Consensus 598 ~YPItqpT~~Li~evl 613 (617)
T PF15087_consen 598 CYPITQPTLQLIHEVL 613 (617)
T ss_pred CCCCchHHHHHHHHHH
Confidence 7888999999999987
No 32
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=32.84 E-value=1e+02 Score=27.80 Aligned_cols=65 Identities=18% Similarity=0.366 Sum_probs=39.0
Q ss_pred HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhh---HHHHHHHHHHhhccCCCc
Q 040072 155 QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKN---YDWFFQEYNSQLLESSSY 225 (354)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~N---yd~Ff~~yn~~Ll~s~NY 225 (354)
....+|+.+|+.|.++++|++.+.|.=.-.-+.+..|. ..+-+||.++ ...+++.+| .++.-+++
T Consensus 22 ~i~~~Y~~~D~efq~~~~yl~s~~f~~l~~~l~~~pE~-----~~l~~yL~~~gldv~~~i~~i~-~~l~~~~~ 89 (179)
T PF06757_consen 22 DIVQRYYLEDAEFQAAVRYLNSSEFKQLWQQLEALPEV-----KALLDYLESAGLDVYYYINQIN-DLLGLPPL 89 (179)
T ss_pred HHHHHHHHcCHHHHHHHHHHcChHHHHHHHHHHcCHHH-----HHHHHHHHHCCCCHHHHHHHHH-HHHcCCcC
Confidence 34567889999999999999888775333222222222 1233666642 333566666 56655555
No 33
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=31.84 E-value=5.5e+02 Score=27.01 Aligned_cols=62 Identities=18% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHHhhccCC-CcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCc--ceecc
Q 040072 211 FFQEYNSQLLESS-SYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNI--QFESF 277 (354)
Q Consensus 211 Ff~~yn~~Ll~s~-NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~I--q~EAF 277 (354)
++..+. ..+.++ +==....++..|+++|.-+....+ |+... .++.++.+|+..+-++ |+++.
T Consensus 144 ~~~~l~-~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~---f~~~~-~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 144 YFNWLK-EQLNNITNNDYVQTAARCLQMLLRVDEYRFA---FVLAD-GVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred HHHHHH-HHhhccCCcchHHHHHHHHHHHhCCchHHHH---HHHcc-CHHHHHHHHhhccccHHHHHHHH
Confidence 444454 444432 222233467789999977765544 55544 8999999998766443 55554
No 34
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=30.21 E-value=2.5e+02 Score=31.04 Aligned_cols=72 Identities=22% Similarity=0.427 Sum_probs=54.9
Q ss_pred hHHHhhhhccCCCchhhhhHHHHHHHHHhcCh------hHHHHHHHh---------------hHHHHHHHHHHhhccCCC
Q 040072 166 HMKKFFSFLQIPNFDIASDAQATFKELLTRHK------STVAEFLSK---------------NYDWFFQEYNSQLLESSS 224 (354)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk------~lvaefl~~---------------Nyd~Ff~~yn~~Ll~s~N 224 (354)
.+..+|.+++.+.=.+.=|+-+-++++|+.-+ .+|-.|+.. |--.||...| ..+..+.
T Consensus 5 ~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~-~~~~~~~ 83 (668)
T PF04388_consen 5 SITELLSLLESNDLSVLEEIKALLQELLNSDREPWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLN-DYFVKPS 83 (668)
T ss_pred cHHHHHHHhcCCchhhHHHHHHHHHHHhhccchHHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHH-HHHcCch
Confidence 46778888888888888899999999998764 344455543 2356899998 5666654
Q ss_pred cchhhhhHHHHHHHhc
Q 040072 225 YITKRHAVKLLGDILL 240 (354)
Q Consensus 225 YVtkRQSLKLLgelLl 240 (354)
+|-++|-|||.++-
T Consensus 84 --~Rl~~L~Ll~~~v~ 97 (668)
T PF04388_consen 84 --YRLQALTLLGHFVR 97 (668)
T ss_pred --hHHHHHHHHHHHHh
Confidence 68899999999994
No 35
>KOG3666 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.79 E-value=9.3e+02 Score=27.61 Aligned_cols=109 Identities=17% Similarity=0.237 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHhC-CCCCCCcchhHHHHHHHHhh--cccCCCcchh
Q 040072 42 SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASL-PKLAMGPRRDATHVVANLQR--QRVDTKLIAC 118 (354)
Q Consensus 42 ~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr--~~~~~~~p~v 118 (354)
+-.++-+..||..+-|..|-+| .||-.+=.+..++..+...+ ..+-|..|-.-.++-.-|+. ..+.+--...
T Consensus 666 A~ft~GIlmMktTlVG~IEidP-----KqLLEdGirkeLvk~ia~a~~~Glif~p~~kps~l~~kL~~l~~tIEg~RrSF 740 (1141)
T KOG3666|consen 666 AIFTEGILMMKTTLVGIIEVDP-----KQLLEDGIRKELVKRVAFALHRGLIFNPRAKPSELMPKLKELGATIEGFRRSF 740 (1141)
T ss_pred HHHHHHHHHHHHhheeEEeeCH-----HHHHHHHHHHHHHHHHHHHHhcccccCCCCCcHHHHHHHHHHHHHHHHHHhhH
Confidence 4567889999999999999888 44544444444444443333 24666666666666665442 2222222236
Q ss_pred HHhhhc--hhHHHHHHh---hcCCchhhhhHhHHHHHHHhHH
Q 040072 119 TYLEAN--FDIMDTLIL---GYEDGDVALTYGAIARECIRHQ 155 (354)
Q Consensus 119 ~Yl~~~--peil~~L~~---gY~~~dial~~G~mLRecik~e 155 (354)
+|++.. -+=+.++.. -.=+-++.=-|+..+|--+..+
T Consensus 741 eYi~DY~n~~Gl~iw~ee~~riinynve~EcnAFlR~k~q~~ 782 (1141)
T KOG3666|consen 741 EYIQDYVNIYGLKIWQEEVSRIINYNVEQECNAFLRTKIQDW 782 (1141)
T ss_pred HHHHHHHcchhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHH
Confidence 677652 222222221 1112233344666666555443
No 36
>PF14680 FANCI_HD2: FANCI helical domain 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=28.09 E-value=55 Score=31.35 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=33.1
Q ss_pred HhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHH---HHHHhhHHHHHH
Q 040072 144 YGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVA---EFLSKNYDWFFQ 213 (354)
Q Consensus 144 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lva---efl~~Nyd~Ff~ 213 (354)
.=.+||-|+-+++-.|.+||... -+++++.+.++. ++|..|+..||.
T Consensus 35 Ilg~LRRCL~QQa~VR~~LY~gl-----------------------~~~v~~n~~l~~~iLd~L~~hf~~y~~ 84 (234)
T PF14680_consen 35 ILGILRRCLTQQADVRLMLYEGL-----------------------YDVVTRNPQLAPHILDMLLSHFKQYYE 84 (234)
T ss_dssp HHHHHHGGGGS-HHHHHHHHHHH-----------------------HHHHHHSGGGHHHHHHHHHHHHHHHB-
T ss_pred HHHHHHHHhcChHHHHHHHHHHH-----------------------HHHHHcCcccHHHHHHHHHHHHHHHhC
Confidence 34678999999999999999852 356666676665 556677776665
No 37
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=27.93 E-value=1.4e+02 Score=27.27 Aligned_cols=53 Identities=13% Similarity=0.268 Sum_probs=12.0
Q ss_pred hhhh--HHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc
Q 040072 181 IASD--AQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILL 240 (354)
Q Consensus 181 iasD--Af~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLl 240 (354)
+..| +..++.+++..+++++...-..+.+.|+ .||...+ -..+-|++|+.|..
T Consensus 115 ~~~~~~~~d~l~~i~~dN~~L~~~i~e~~I~~~i-----~ll~~~g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 115 IGYGLGALDVLTEIFRDNPELCESISEEHIEKFI-----ELLRKHG--RQPRYLDFLSSLCV 169 (207)
T ss_dssp H-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred ccCCchHHHHHHHHHHCcHHHHHHhhHHHHHHHH-----HHHHHcC--CChHHHHHHhhhcc
Confidence 4455 8999999999999999998877777766 3444433 23345677776653
No 38
>KOG2056 consensus Equilibrative nucleoside transporter protein [Nucleotide transport and metabolism]
Probab=27.47 E-value=3.1e+02 Score=28.00 Aligned_cols=46 Identities=13% Similarity=0.154 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHh
Q 040072 62 EPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQ 107 (354)
Q Consensus 62 ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 107 (354)
.|++....+||+.-|+...+..++..|.+=-=.+.|.-.+||..|.
T Consensus 36 GPs~~lm~eIA~~ty~~~e~~eIm~vi~kRl~d~gknWR~VyKaLt 81 (336)
T KOG2056|consen 36 GPSGTLMAEIAQATYNFVEYQEIMDVLWKRLNDSGKNWRHVYKALT 81 (336)
T ss_pred CCchHHHHHHHHHhcCHHHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 5889999999999999988777777776643346777777777654
No 39
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=27.33 E-value=4.2e+02 Score=23.07 Aligned_cols=88 Identities=15% Similarity=0.069 Sum_probs=58.6
Q ss_pred CCCh-HHHHHHHHHHHhh-----cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc
Q 040072 62 EPNA-DACEQLTREFFKE-----DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY 135 (354)
Q Consensus 62 ep~~-e~~~qLa~ei~~~-----dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY 135 (354)
+|.| -...+||+..+.+ .++..|...|..=+--.+-.+-.|...|.+. +....+.++..|..++..+...-
T Consensus 15 ~p~pgy~~~Eia~~t~~s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~---G~~~f~~~~~~~~~~Ik~~~~f~ 91 (122)
T cd03572 15 EPTPGYLYEEIAKLTRKSVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEK---GNSDFKRELQRNSAQIRECANYK 91 (122)
T ss_pred CCCchHHHHHHHHHHHcCHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhh---CCHHHHHHHHHhHHHHHHHHHcC
Confidence 3444 4556777777765 4566777777765555555677788888874 33456889999999999986543
Q ss_pred CCch--hhhhHhHHHHHHH
Q 040072 136 EDGD--VALTYGAIARECI 152 (354)
Q Consensus 136 ~~~d--ial~~G~mLReci 152 (354)
.-|| -.-.-|...|+-.
T Consensus 92 g~~Dp~~Gd~~~~~VR~~A 110 (122)
T cd03572 92 GPPDPLKGDSLNEKVREEA 110 (122)
T ss_pred CCCCcccCcchhHHHHHHH
Confidence 3233 4556678888765
No 40
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.17 E-value=1.1e+03 Score=27.76 Aligned_cols=93 Identities=19% Similarity=0.214 Sum_probs=53.4
Q ss_pred hHHHhhhhc----cCCCchhhhhHHHHHHHHHhcCh-----------hHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 040072 166 HMKKFFSFL----QIPNFDIASDAQATFKELLTRHK-----------STVAEFLSKNYDWFFQEYNSQLLESSSYITKRH 230 (354)
Q Consensus 166 ~f~~fF~yv----~~~~FdiasDAf~Tfkellt~Hk-----------~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (354)
..|.+++++ +.+.=-.-=-|.-.+.+|...|+ .++.+++-. .-+..+ +|+..+|| |
T Consensus 124 ~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~----il~~~~-~ll~~~s~----~ 194 (1010)
T KOG1991|consen 124 QWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPD----ILQIFN-GLLSQESY----Q 194 (1010)
T ss_pred cchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH----HHHHHH-hhccccch----H
Confidence 345666554 33322222256667777777665 344444443 334444 79999877 6
Q ss_pred hHHHHHHHhc--ccccHHHHHHHhcChhhHHHHHHHhcc
Q 040072 231 AVKLLGDILL--DRSNSAVMVKYVSSLDNMRILMNLLRD 267 (354)
Q Consensus 231 SLKLLgelLl--dr~N~~vM~~Yis~~~NLkliM~LL~d 267 (354)
|.+++--||- --..+--.-++..+++.+---|.++..
T Consensus 195 s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~ 233 (1010)
T KOG1991|consen 195 SVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLS 233 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHH
Confidence 6666665553 223334445677888888888877643
No 41
>PF06393 BID: BH3 interacting domain (BID); InterPro: IPR010479 Apoptosis, or programmed cell death (PCD), is a common and evolutionarily conserved property of all metazoans []. In many biological processes, apoptosis is required to eliminate supernumerary or dangerous (such as pre-cancerous) cells and to promote normal development. Dysregulation of apoptosis can, therefore, contribute to the development of many major diseases including cancer, autoimmunity and neurodegenerative disorders. In most cases, proteins of the caspase family execute the genetic programme that leads to cell death. Bcl-2 proteins are central regulators of caspase activation, and play a key role in cell death by regulating the integrity of the mitochondrial and endoplasmic reticulum (ER) membranes []. At least 20 Bcl-2 proteins have been reported in mammals, and several others have been identified in viruses. Bcl-2 family proteins fall roughly into three subtypes, which either promote cell survival (anti-apoptotic) or trigger cell death (pro-apoptotic). All members contain at least one of four conserved motifs, termed Bcl-2 Homology (BH) domains. Bcl-2 subfamily proteins, which contain at least BH1 and BH2, promote cell survival by inhibiting the adapters needed for the activation of caspases. Pro-apoptotic members potentially exert their effects by displacing the adapters from the pro-survival proteins; these proteins belong either to the Bax subfamily, which contain BH1-BH3, or to the BH3 subfamily, which mostly only feature BH3 []. Thus, the balance between antagonistic family members is believed to play a role in determining cell fate. Members of the wider Bcl-2 family, which also includes Bcl-x, Bcl-w and Mcl-1, are described by their similarity to Bcl-2 protein, a member of the pro-survival Bcl-2 subfamily []. Full-length Bcl-2 proteins feature all four BH domains, seven alpha-helices, and a C-terminal hydrophobic motif that targets the protein to the outer mitochondrial membrane, ER and nuclear envelope. BID is a member of the Bcl-2 superfamily of proteins that are key regulators of programmed cell death, hence this family is related to the Apoptosis regulator Bcl-2 protein BH domain. BID is a pro-apoptotic member of the Bcl-2 superfamily and as such posses the ability to target intracellular membranes and contains the BH3 death domain. The activity of BID is regulated by a Caspase 8-mediated cleavage event, exposing the BH3 domain and significantly changing the surface charge and hydrophobicity, which causes a change of cellular localisation [].; GO: 0043065 positive regulation of apoptosis, 0005737 cytoplasm; PDB: 2BID_A 1ZY3_B 2KBW_B 1DDB_A 2VOI_B.
Probab=26.94 E-value=1.1e+02 Score=29.04 Aligned_cols=72 Identities=15% Similarity=0.269 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc------------HHHHHHHhCCCCCCCcchhHHHHHHHH
Q 040072 39 EKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED------------TLRLLIASLPKLAMGPRRDATHVVANL 106 (354)
Q Consensus 39 ~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d------------ll~~Li~~l~~L~fE~RKdv~~If~~l 106 (354)
+.+..|+..|.+|=.-+-. +..|+.+..||+.+-+.+ .+..++...| .|+| +-.+..+++-+
T Consensus 83 Eiir~IA~qLAqIGD~me~----sI~p~lV~~La~qf~n~~LseEdrr~~LAaavq~lmqt~P-~Dme-~Eka~L~ltML 156 (196)
T PF06393_consen 83 EIIRRIARQLAQIGDRMER----SIQPSLVNNLAQQFRNSNLSEEDRRRCLAAAVQQLMQTVP-KDME-QEKAMLVLTML 156 (196)
T ss_dssp HCHHHHHHHHHHHHHHHHC----C-TTTTHHHHHHHHHSCCCCCCCCCHHHHHHHHHHHCCS--STCH-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc----cCCHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHCC-ccHH-HHHHHHHHHHH
Confidence 3456789999999888844 467889999999998773 3455555553 3565 44567788888
Q ss_pred hhcccCCCcc
Q 040072 107 QRQRVDTKLI 116 (354)
Q Consensus 107 lr~~~~~~~p 116 (354)
|..++-+..|
T Consensus 157 LaKKVa~htP 166 (196)
T PF06393_consen 157 LAKKVADHTP 166 (196)
T ss_dssp HHHHHHHH-T
T ss_pred HHHHHHHhCc
Confidence 8888655554
No 42
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=26.28 E-value=2.1e+02 Score=27.85 Aligned_cols=64 Identities=23% Similarity=0.305 Sum_probs=41.2
Q ss_pred CCchhhhhHHHHHHHHHhcChhHHHHHHHh-------hHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccH
Q 040072 177 PNFDIASDAQATFKELLTRHKSTVAEFLSK-------NYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNS 245 (354)
Q Consensus 177 ~~FdiasDAf~Tfkellt~Hk~lvaefl~~-------Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~ 245 (354)
++-|+--=....+-|++.-++..+.-|+.. .|..|+ +++++++..++.+|.++|+.++..+...
T Consensus 69 ~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl-----~ll~~~D~~i~~~a~~iLt~Ll~~~~~~ 139 (312)
T PF03224_consen 69 SNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFL-----KLLDRNDSFIQLKAAFILTSLLSQGPKR 139 (312)
T ss_dssp --HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHH-----HH-S-SSHHHHHHHHHHHHHHHTSTTT-
T ss_pred CcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHH-----HHhcCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 334444444566778888888766666651 345554 5888999999999999999999775543
No 43
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=26.26 E-value=1.3e+02 Score=25.42 Aligned_cols=88 Identities=17% Similarity=0.213 Sum_probs=44.7
Q ss_pred CCCCCCChHHHHHHHHHHHhhc----HHHHHHHhCCCCCCCcchhHHHHHHH------HhhcccCCCcchhHHhhhchhH
Q 040072 58 SDQSEPNADACEQLTREFFKED----TLRLLIASLPKLAMGPRRDATHVVAN------LQRQRVDTKLIACTYLEANFDI 127 (354)
Q Consensus 58 ~~e~ep~~e~~~qLa~ei~~~d----ll~~Li~~l~~L~fE~RKdv~~If~~------llr~~~~~~~p~v~Yl~~~pei 127 (354)
+++..|.+....+|++..|+.+ ++..|...|. . ...|.-..++-. |++ .+..-++.++..+-++
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~~~~~~I~~~l~kRL~--~-~~~k~wr~~~KaL~ll~yLl~---nG~~~~~~~~~~~~~~ 87 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNSKDCQEIMDVLWKRLS--K-SDGKNWRHVYKALTLLEYLLK---NGSERFVDELRDHIDI 87 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSCHHHHHHHHHHHHHHH--S-STSSGHHHHHHHHHHHHHHHH---HS-HHHHHHHHHTHHH
T ss_pred CCCCCcCHHHHHHHHHHHhccccHHHHHHHHHHHHH--h-cCCcchhHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHH
Confidence 3455677888999999988853 3444444441 1 245555555544 444 1222345666666666
Q ss_pred HHHHHhhcCCch-hhhhHhHHHHHHH
Q 040072 128 MDTLILGYEDGD-VALTYGAIARECI 152 (354)
Q Consensus 128 l~~L~~gY~~~d-ial~~G~mLReci 152 (354)
|..| ..|..+| -.-..|.-+|+-+
T Consensus 88 I~~l-~~f~~~d~~g~d~~~~VR~~A 112 (125)
T PF01417_consen 88 IREL-QDFQYVDPKGKDQGQNVREKA 112 (125)
T ss_dssp HHGG-GG---BBTTSTBHHHHHHHHH
T ss_pred Hhhc-ceeeccCCCCccHHHHHHHHH
Confidence 6666 3333222 2344555566644
No 44
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=25.68 E-value=1.5e+02 Score=26.66 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHH
Q 040072 41 MSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTL 81 (354)
Q Consensus 41 ~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll 81 (354)
.+|+.|.|..|-.-+-++.=..|.-+...+|++++-+.|+-
T Consensus 67 ~~D~~KRL~iLfd~ln~g~Ls~~v~~~L~~L~~aL~~~d~~ 107 (157)
T PF07304_consen 67 VDDIEKRLNILFDHLNNGKLSKPVVDKLHQLAQALQARDYD 107 (157)
T ss_dssp HHHHHHHHHHHHHHHHHT-S-HHHHHHHHHHHHHHHHT-HH
T ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHH
Confidence 58999999999888876555566778889999988777653
No 45
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=24.46 E-value=1.2e+02 Score=20.35 Aligned_cols=37 Identities=14% Similarity=0.155 Sum_probs=31.1
Q ss_pred HHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHh
Q 040072 71 LTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQ 107 (354)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~ll 107 (354)
-.+.+...+.+..|+..|..-+.+.++.++-...++-
T Consensus 4 ~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 4 NKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 3566778899999999999999999998888777764
No 46
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=24.12 E-value=2.6e+02 Score=31.23 Aligned_cols=93 Identities=19% Similarity=0.265 Sum_probs=57.8
Q ss_pred CCCchhhhhHHHHHHHHHhcChhHHHHHHHh------------hHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccc
Q 040072 176 IPNFDIASDAQATFKELLTRHKSTVAEFLSK------------NYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRS 243 (354)
Q Consensus 176 ~~~FdiasDAf~Tfkellt~Hk~lvaefl~~------------Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~ 243 (354)
..+|-|.|=.+....-=+.||....++-... .|++....|+ .|+...+=+-+ -++.||..+-.|..
T Consensus 204 l~~~kiG~l~m~iie~Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~-~l~~kQeqLlr-v~~~lLlNLAed~~ 281 (708)
T PF05804_consen 204 LAHYKIGSLCMEIIEHELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQ-TLIRKQEQLLR-VAFYLLLNLAEDPR 281 (708)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHH-HHHHHHHHHHH-HHHHHHHHHhcChH
Confidence 4566677777766666666776555544332 3667777776 55555444433 56777888877777
Q ss_pred cHHHHHHHhcChhhHHHHHHHhccCCcCcce
Q 040072 244 NSAVMVKYVSSLDNMRILMNLLRDSNKNIQF 274 (354)
Q Consensus 244 N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~ 274 (354)
+-.-|. +..-+..+..+|...+..+.+
T Consensus 282 ve~kM~----~~~iV~~Lv~~Ldr~n~elli 308 (708)
T PF05804_consen 282 VELKMV----NKGIVSLLVKCLDRENEELLI 308 (708)
T ss_pred HHHHHH----hcCCHHHHHHHHcCCCHHHHH
Confidence 766664 366666666777655544433
No 47
>PF12552 DUF3741: Protein of unknown function (DUF3741); InterPro: IPR022212 This domain family is found in eukaryotes, and is approximately 50 amino acids in length.
Probab=23.29 E-value=78 Score=23.23 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=16.6
Q ss_pred HHHHHHHHhHHHHHHHhhc
Q 040072 292 EIISVLIANRSKLLRFFSD 310 (354)
Q Consensus 292 ~I~~IL~~Nr~kLl~fl~~ 310 (354)
+..+||.-||+-+++||.+
T Consensus 25 DaLeiL~sNkdlflk~Lqd 43 (46)
T PF12552_consen 25 DALEILSSNKDLFLKFLQD 43 (46)
T ss_pred HHHHHHHhCHHHHHHHHhC
Confidence 4678999999999999975
No 48
>KOG3230 consensus Vacuolar assembly/sorting protein DID4 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.22 E-value=5.2e+02 Score=24.82 Aligned_cols=65 Identities=29% Similarity=0.457 Sum_probs=36.3
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHH-H-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHh
Q 040072 1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEK-M-SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFK 77 (354)
Q Consensus 1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k-~-~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~ 77 (354)
|. +|+++ +||.|+.|.-.-.|.+--.. -.++.. + .+=-|.+..||..-- .-+-.++.-+|..+.+
T Consensus 1 m~-lFgk~-~tp~e~Lr~nqRal~~a~Re-----leRer~~le~qeKklvaeIKk~AK-----~gq~~A~KimAkdLvR 67 (224)
T KOG3230|consen 1 MD-LFGKK-KTPAELLRENQRALNKATRE-----LERERQKLELQEKKLVAEIKKTAK-----QGQMDAVKIMAKDLVR 67 (224)
T ss_pred CC-cccCC-CCHHHHHHHhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH-----cccHHHHHHHHHHHHH
Confidence 45 88888 89999999887777764322 112111 1 223345666665532 1223445555555544
No 49
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=21.35 E-value=1.2e+02 Score=34.07 Aligned_cols=87 Identities=21% Similarity=0.317 Sum_probs=57.1
Q ss_pred CCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHH------HHHH--H
Q 040072 90 KLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQS------VARY--V 161 (354)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~------la~~--i 161 (354)
.+.|+ ||.+++.-..+=- ..+...++|+.- --|+-.|++-..-|=..+.||++|-||+|-.+ +|+- +
T Consensus 325 sl~fn-RKecA~~l~~l~~---~f~~~p~eyliv-EtIfgell~LP~~~~~~iyy~slLiElCK~~P~~lpqV~aqa~r~ 399 (759)
T KOG1104|consen 325 SLEFN-RKECARQLLSLPV---KFKAIPIEYLIV-ETIFGELLRLPTPPYKTIYYTSLLIELCKLQPKALPQVLAQAVRI 399 (759)
T ss_pred Hhhhh-HHHHHHHHHcCcc---cccCccHHHHHH-HHHHHHHhcCCCCCCchHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 46776 9988876554422 222234777643 23556666667778889999999999998763 3331 2
Q ss_pred hcc-------hhHHHhhhhc--cCCCchh
Q 040072 162 LES-------EHMKKFFSFL--QIPNFDI 181 (354)
Q Consensus 162 L~~-------~~f~~fF~yv--~~~~Fdi 181 (354)
+|. +|+..|.+|+ +++||.-
T Consensus 400 lY~rldsm~~~c~dR~idWFShHLSNF~F 428 (759)
T KOG1104|consen 400 LYMRLDSMDTECFDRFIDWFSHHLSNFQF 428 (759)
T ss_pred HHHHhccCCHHHHHHHHHHHHHHhccCcc
Confidence 222 5888999886 5777754
No 50
>KOG2219 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.86 E-value=4.6e+02 Score=29.49 Aligned_cols=123 Identities=23% Similarity=0.381 Sum_probs=76.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhh-hccCCCCCCChHHHHHHHHHHHhhcHH
Q 040072 3 GLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTV-LFGSDQSEPNADACEQLTREFFKEDTL 81 (354)
Q Consensus 3 ~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~i-l~G~~e~ep~~e~~~qLa~ei~~~dll 81 (354)
++||.|.+-.-|..|.+...|.|-..-+. .++ + =+-..|..|-+| ++|| ..+| +.-+++
T Consensus 10 ~l~~pkn~hSLe~LkYL~~vLtKn~~VtE-~Nr----~--llVEaLRsIaEILiwGD-QnDs-------svFdFF----- 69 (864)
T KOG2219|consen 10 GLWKPKNPHSLEHLKYLYGVLTKNTTVTE-NNR----K--LLVEALRAIAEILIWGD-QNDS-------SVFDFF----- 69 (864)
T ss_pred CCCCCCCcccHHHHHHHHHHHhhcceecc-cch----h--HHHHHHHHHHHHHhhcc-cCch-------HHHHHH-----
Confidence 34544433346778999999887654332 111 1 233445555566 4674 3444 333333
Q ss_pred HHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHHHH
Q 040072 82 RLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYV 161 (354)
Q Consensus 82 ~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~i 161 (354)
--|.+.--|-+++|++.+ +..+|+-|.+ =+||-|-||||.-.-|+
T Consensus 70 -------------lEkqml~yFl~Ilrq~st-~~v~VQLLQT---------------------lnIlfeNirhEtslYyL 114 (864)
T KOG2219|consen 70 -------------LEKQMLGYFLRILRQKST-VTVCVQLLQT---------------------LNILFENIRHETSLYYL 114 (864)
T ss_pred -------------HHHHHHHHHHHHHhhcCC-ceEeHHHHHH---------------------HHHHHHhccccceeeee
Confidence 236666778888887754 6777776654 35777899999999999
Q ss_pred hcchhHHHhhhhccCCCchhhhh
Q 040072 162 LESEHMKKFFSFLQIPNFDIASD 184 (354)
Q Consensus 162 L~~~~f~~fF~yv~~~~FdiasD 184 (354)
|.+.++ .++-...||.+-|
T Consensus 115 lSNnyV----NsiI~hkFDfq~e 133 (864)
T KOG2219|consen 115 LSNNYV----NSIIVHKFDFQDE 133 (864)
T ss_pred ecccce----eeeEEEeecCCcH
Confidence 988654 3455667877554
No 51
>PHA02800 hypothetical protein; Provisional
Probab=20.62 E-value=5.6e+02 Score=23.46 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=46.5
Q ss_pred HhhcCCchhhhhHhHHHHHHHhHHHHHHHHhcchhH---HHhhh---hccCCCchh----hhhHHHHHHHHHhcChhHHH
Q 040072 132 ILGYEDGDVALTYGAIARECIRHQSVARYVLESEHM---KKFFS---FLQIPNFDI----ASDAQATFKELLTRHKSTVA 201 (354)
Q Consensus 132 ~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f---~~fF~---yv~~~~Fdi----asDAf~Tfkellt~Hk~lva 201 (354)
-+|++++ +-=.||.|..|..+++.+|+.-.....+ ...+. ....+.-+| --|-....|+++.---.++.
T Consensus 44 WR~ng~~-~~~~cGKIFKELmKyD~lAkk~~~~~d~~~~KNM~l~~Dk~~syvLni~e~~~~D~i~~~Ke~IG~~AILse 122 (161)
T PHA02800 44 WRFNGGK-VDENTGKIFKEFFKYDTLAKWRFSKRDFEQCKNMLLENDKNTSYVLDVPKPEKNDPLLNLKELIGFLAILSE 122 (161)
T ss_pred hhcCCCh-hhHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHhhccccchhccchhhccccHHHHHHHHHHHHHHHHH
Confidence 4555444 5558999999999999999977533322 11111 111111110 12555666666654443433
Q ss_pred HH-HHhhHHHHHHHHH
Q 040072 202 EF-LSKNYDWFFQEYN 216 (354)
Q Consensus 202 ef-l~~Nyd~Ff~~yn 216 (354)
++ +..||+..|...|
T Consensus 123 eIk~D~~F~~lFn~l~ 138 (161)
T PHA02800 123 EIKKDTKFFALFNIMN 138 (161)
T ss_pred HhhhhhhHHHHHHHHH
Confidence 44 4566666666665
No 52
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.16 E-value=1e+03 Score=25.80 Aligned_cols=118 Identities=14% Similarity=0.225 Sum_probs=78.9
Q ss_pred HHHHHHHHhhcHHHHHHHhCCCCCCC-cchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCc------hhh
Q 040072 69 EQLTREFFKEDTLRLLIASLPKLAMG-PRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDG------DVA 141 (354)
Q Consensus 69 ~qLa~ei~~~dll~~Li~~l~~L~fE-~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~------dia 141 (354)
.+.++++.+.+.|..|...+..-+=+ -||.++=+.+|+.+ |+ ...++++... .++..|++++... |.|
T Consensus 311 d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA---G~-~~qiqaVida-~l~p~Li~~l~~~ef~~rKEAa 385 (514)
T KOG0166|consen 311 DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITA---GN-QEQIQAVIDA-NLIPVLINLLQTAEFDIRKEAA 385 (514)
T ss_pred HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc---CC-HHHHHHHHHc-ccHHHHHHHHhccchHHHHHHH
Confidence 46788999999998888888877777 46778888888876 22 2347776663 5555555555444 445
Q ss_pred hhHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHH
Q 040072 142 LTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELL 193 (354)
Q Consensus 142 l~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkell 193 (354)
-..++..-.+. ...-+||.+.+++.-|-+++..+.=++..=++.++.-+|
T Consensus 386 waIsN~ts~g~--~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 386 WAISNLTSSGT--PEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENIL 435 (514)
T ss_pred HHHHhhcccCC--HHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHH
Confidence 55555555555 445678888888888888887766666554444444443
Done!