Query 040072
Match_columns 354
No_of_seqs 122 out of 232
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 07:14:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040072.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040072hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1upk_A MO25 protein; transfera 100.0 1E-131 4E-136 965.9 28.7 334 1-339 3-338 (341)
2 4hxt_A De novo protein OR329; 96.6 0.034 1.2E-06 48.0 12.8 201 72-284 37-240 (252)
3 4hxt_A De novo protein OR329; 96.4 0.061 2.1E-06 46.4 13.3 241 80-338 3-246 (252)
4 4db8_A Armadillo-repeat protei 96.1 0.025 8.6E-07 49.5 9.5 195 73-279 48-245 (252)
5 2jdq_A Importin alpha-1 subuni 95.0 0.55 1.9E-05 44.1 14.7 197 76-285 146-347 (450)
6 4db6_A Armadillo repeat protei 94.5 0.18 6.1E-06 42.8 9.0 184 83-279 16-203 (210)
7 1wa5_B Importin alpha subunit; 93.8 0.78 2.7E-05 45.1 13.4 199 76-286 212-413 (530)
8 4db8_A Armadillo-repeat protei 93.2 1.7 5.7E-05 37.7 13.1 208 90-314 23-233 (252)
9 4db6_A Armadillo repeat protei 93.1 1 3.6E-05 37.9 11.4 159 72-239 47-208 (210)
10 4fdd_A Transportin-1; heat rep 91.4 5.5 0.00019 41.5 16.5 186 83-286 94-286 (852)
11 4b8j_A Importin subunit alpha- 91.3 1.9 6.5E-05 42.1 12.3 197 77-286 200-401 (528)
12 1wa5_B Importin alpha subunit; 90.3 1.1 3.9E-05 43.9 9.6 198 79-285 257-457 (530)
13 3tpo_A Importin subunit alpha- 90.2 1.2 4E-05 44.3 9.7 201 73-285 156-364 (529)
14 4b8j_A Importin subunit alpha- 89.9 0.9 3.1E-05 44.4 8.5 198 76-285 157-358 (528)
15 1xqr_A HSPBP1 protein; armadil 89.5 14 0.00046 34.6 19.6 208 14-241 25-239 (296)
16 2jdq_A Importin alpha-1 subuni 88.7 2.3 7.8E-05 39.8 10.0 199 75-285 103-305 (450)
17 4hat_C Exportin-1; heat repeat 85.7 17 0.00058 39.9 16.1 174 136-326 816-1022(1023)
18 2bpt_A Importin beta-1 subunit 84.8 9.6 0.00033 38.8 12.8 110 171-286 185-296 (861)
19 2z6g_A B-catenin; FULL-length, 83.7 28 0.00094 36.6 16.1 181 78-270 149-332 (780)
20 1ibr_B P95, importin beta-1 su 83.6 28 0.00095 32.2 14.7 153 124-285 126-288 (462)
21 1jdh_A Beta-catenin; beta-cate 82.4 4.8 0.00016 38.6 9.0 149 138-299 324-499 (529)
22 3now_A UNC-45 protein, SD10334 82.4 19 0.00064 38.9 14.4 200 71-285 487-694 (810)
23 3tpo_A Importin subunit alpha- 82.2 16 0.00055 36.0 13.0 198 75-284 200-405 (529)
24 4fdd_A Transportin-1; heat rep 82.2 2.2 7.7E-05 44.4 7.0 189 83-284 52-243 (852)
25 3ul1_B Importin subunit alpha- 79.3 12 0.00042 36.8 10.9 195 75-281 181-383 (510)
26 1xqr_A HSPBP1 protein; armadil 79.0 4.6 0.00016 37.9 7.3 167 156-335 115-286 (296)
27 2qk2_A LP04448P; mini spindles 78.0 13 0.00045 32.4 9.7 174 86-282 22-202 (242)
28 1jdh_A Beta-catenin; beta-cate 77.6 45 0.0015 31.7 14.1 181 78-270 16-199 (529)
29 1qgr_A Protein (importin beta 76.6 69 0.0024 32.5 18.6 183 84-285 95-288 (876)
30 2bpt_A Importin beta-1 subunit 74.9 76 0.0026 32.2 16.0 185 80-281 225-436 (861)
31 2z6h_A Catenin beta-1, beta-ca 74.4 73 0.0025 32.0 15.3 180 77-269 12-195 (644)
32 3ul1_B Importin subunit alpha- 72.8 74 0.0025 31.1 17.8 187 79-276 232-421 (510)
33 3nmw_A APC variant protein; AR 71.1 26 0.00088 33.5 10.5 163 75-245 166-339 (354)
34 1qgr_A Protein (importin beta 71.0 33 0.0011 34.9 11.8 189 80-285 218-437 (876)
35 3now_A UNC-45 protein, SD10334 69.4 32 0.0011 37.1 11.7 197 72-280 529-732 (810)
36 3nmz_A APC variant protein; pr 65.6 51 0.0018 32.8 11.7 162 74-243 281-453 (458)
37 3grl_A General vesicular trans 65.2 1.4E+02 0.0049 31.5 18.3 157 47-206 82-253 (651)
38 1ibr_B P95, importin beta-1 su 64.9 54 0.0018 30.3 11.1 189 81-285 219-437 (462)
39 1w9c_A CRM1 protein, exportin 62.8 75 0.0026 30.6 11.8 92 125-216 114-221 (321)
40 2z6h_A Catenin beta-1, beta-ca 62.5 1.3E+02 0.0045 30.1 14.9 179 75-269 348-550 (644)
41 1u6g_C TIP120 protein, CAND1; 62.0 20 0.00068 38.9 8.5 148 80-241 49-205 (1230)
42 3qml_C Protein SLS1, nucleotid 61.6 15 0.0005 35.6 6.5 51 79-134 71-122 (315)
43 2x19_B Importin-13; nuclear tr 61.1 1.6E+02 0.0055 30.7 17.9 171 125-311 725-907 (963)
44 2z6g_A B-catenin; FULL-length, 60.1 80 0.0028 33.0 12.5 179 74-268 483-685 (780)
45 3m1i_C Exportin-1; heat repeat 58.6 1E+02 0.0036 33.0 13.4 98 136-239 816-924 (1049)
46 1upk_A MO25 protein; transfera 55.7 83 0.0028 30.7 10.8 138 71-211 156-302 (341)
47 1b3u_A Protein (protein phosph 52.7 48 0.0016 31.8 8.7 140 170-334 446-585 (588)
48 3ltm_A Alpha-REP4; protein eng 50.8 60 0.002 27.0 8.1 52 218-283 119-170 (211)
49 1w63_A Adapter-related protein 50.0 2.1E+02 0.0073 28.8 13.8 42 173-215 187-228 (618)
50 3eg5_B Protein diaphanous homo 50.0 1.6E+02 0.0056 28.4 12.0 136 8-191 64-211 (383)
51 2vgl_B AP-2 complex subunit be 49.1 57 0.0019 32.7 8.9 104 173-283 129-266 (591)
52 2qk2_A LP04448P; mini spindles 49.1 59 0.002 28.1 8.0 149 90-257 68-221 (242)
53 3grl_A General vesicular trans 47.8 27 0.00092 36.9 6.4 62 218-280 129-190 (651)
54 3ltm_A Alpha-REP4; protein eng 46.3 1.3E+02 0.0043 25.0 11.4 92 166-286 113-204 (211)
55 3gjx_A Exportin-1; transport, 44.1 3.7E+02 0.013 29.8 15.0 79 136-216 842-929 (1073)
56 3ltj_A Alpharep-4; protein eng 43.8 1.3E+02 0.0046 24.6 10.1 51 218-282 114-164 (201)
57 1u6g_C TIP120 protein, CAND1; 41.4 1.6E+02 0.0056 31.8 11.5 195 78-284 254-505 (1230)
58 3dad_A FH1/FH2 domain-containi 39.8 2.7E+02 0.0093 27.0 14.8 98 42-154 133-232 (339)
59 1wa5_C Importin alpha RE-expor 39.5 3.1E+02 0.011 29.0 13.1 102 91-197 49-155 (960)
60 1ddb_A Protein (BID); apoptosi 37.0 17 0.00057 32.8 2.4 72 40-117 82-165 (195)
61 2bnx_A Diaphanous protein homo 35.6 2.4E+02 0.0081 27.2 10.7 106 8-140 2-114 (386)
62 2qk1_A Protein STU2; STU2P, XM 35.2 75 0.0026 28.4 6.6 71 208-280 144-215 (249)
63 1xm9_A Plakophilin 1; armadill 34.0 1.7E+02 0.0059 28.1 9.4 130 125-265 5-136 (457)
64 1w63_A Adapter-related protein 32.9 60 0.0021 32.9 6.1 113 169-291 317-458 (618)
65 2f31_A Diaphanous protein homo 30.3 2.9E+02 0.0098 24.4 10.8 134 11-191 1-145 (233)
66 2jqq_A Conserved oligomeric go 30.1 1.9E+02 0.0065 26.2 8.1 76 13-91 75-153 (204)
67 2bid_A Protein (BID); programm 28.2 54 0.0019 29.5 4.2 81 38-124 82-183 (197)
68 1xm9_A Plakophilin 1; armadill 27.1 1.1E+02 0.0037 29.6 6.6 108 169-284 6-115 (457)
69 3nmw_A APC variant protein; AR 26.7 4.1E+02 0.014 25.0 11.0 191 78-280 126-329 (354)
70 3dad_A FH1/FH2 domain-containi 26.7 64 0.0022 31.4 4.7 104 177-288 130-234 (339)
71 3nmz_A APC variant protein; pr 25.7 4.9E+02 0.017 25.6 12.1 190 79-280 243-445 (458)
72 3ci9_A Heat shock factor-bindi 25.1 97 0.0033 21.9 4.2 20 9-28 1-20 (48)
73 2qfa_B Borealin; three-helical 22.9 13 0.00044 27.9 -0.8 34 301-334 4-39 (62)
74 2vgl_A Adaptor protein complex 22.7 5.6E+02 0.019 25.9 11.2 191 17-238 11-214 (621)
75 1vdy_A Hypothetical protein (R 22.3 1.5E+02 0.0051 25.1 5.7 97 62-163 26-130 (140)
76 2yru_A Steroid receptor RNA ac 21.4 2.6E+02 0.009 22.9 6.9 44 40-83 37-80 (118)
77 3ltj_A Alpharep-4; protein eng 21.1 3.3E+02 0.011 22.1 12.3 82 167-277 109-190 (201)
No 1
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=100.00 E-value=1.2e-131 Score=965.95 Aligned_cols=334 Identities=41% Similarity=0.738 Sum_probs=308.8
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHH-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc
Q 040072 1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKM-SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED 79 (354)
Q Consensus 1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~-~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d 79 (354)
|+ ||++||||+|+||+++|+|.+|+..+ ++++.++|. +||+|+|++||.||||++|++|+||+|+|||+|+|++|
T Consensus 3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d 78 (341)
T 1upk_A 3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG 78 (341)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence 66 99999999999999999999999643 233443444 89999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHH
Q 040072 80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVAR 159 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~ 159 (354)
+|++||.+||+||||+|||+++||++++|+++|+++|+|+||++||||+++|++||+++|+|++||+|||||+|||.+|+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~ 158 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK 158 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072 160 YVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239 (354)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL 239 (354)
+||++++||+||+|++.|+||||||||+||||+||+||++||+||++||||||++|| +||+|+||||||||||||||||
T Consensus 159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL 237 (341)
T 1upk_A 159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL 237 (341)
T ss_dssp HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred cccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-ccc
Q 040072 240 LDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-ANE 318 (354)
Q Consensus 240 ldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~De 318 (354)
+||+|++||++||+|++|||+||+||+|+|||||+|||||||||||||+||+||++||.+||+|||+||.+|++|+ +|+
T Consensus 238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDe 317 (341)
T 1upk_A 238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDE 317 (341)
T ss_dssp HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCS
T ss_pred hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccHHHHHHHHHHHhcCCCCCC
Q 040072 319 QFEADKLLVIREIATLDLNET 339 (354)
Q Consensus 319 qF~dEK~~lI~~I~~L~~~~~ 339 (354)
||.|||+|||++|++||++.+
T Consensus 318 qF~dEK~~lI~~I~~L~~~~~ 338 (341)
T 1upk_A 318 QFNDEKTYLVKQIRDLKRPAQ 338 (341)
T ss_dssp HHHHHHHHHHHHHHTCCCCCC
T ss_pred hHHHHHHHHHHHHHhCCCCCC
Confidence 999999999999999986553
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.58 E-value=0.034 Score=47.99 Aligned_cols=201 Identities=11% Similarity=0.183 Sum_probs=146.8
Q ss_pred HHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHH
Q 040072 72 TREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIAR 149 (354)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLR 149 (354)
...+...+.+..|+..|..=+-+.|..+..+..++..... ...+.+.. ..++..|+.-. +++++...+-..|.
T Consensus 37 ~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~~~~-~~~i~~l~~ll~~~~~~v~~~a~~~L~ 111 (252)
T 4hxt_A 37 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD----EAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALA 111 (252)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH----HHHHHHHH-TTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCh----HHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455667889999999888777777777878777765321 12333332 34444444433 35677777778888
Q ss_pred HHH-hHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchh
Q 040072 150 ECI-RHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITK 228 (354)
Q Consensus 150 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtk 228 (354)
.+. ..+.....+.....+..+.+.+..++-++...|..++..+-..++.....++... .....- .++.+++.-++
T Consensus 112 ~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~ 187 (252)
T 4hxt_A 112 NIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQ 187 (252)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHH
T ss_pred HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCc---CHHHHH-HHHCCCCHHHH
Confidence 877 5677778888888888899999999999999999999998877766655555543 445553 78999999999
Q ss_pred hhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeee
Q 040072 229 RHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFV 284 (354)
Q Consensus 229 RQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV 284 (354)
+.++..|+.+... +.. ..+++.+..-+..++.+|++.+..+|-+|..+..-+.
T Consensus 188 ~~a~~~L~~l~~~--~~~-~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~ 240 (252)
T 4hxt_A 188 KEAARALANIASG--PTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIK 240 (252)
T ss_dssp HHHHHHHHHHTTS--BHH-HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC--CHH-HHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence 9999999999862 222 3445556788999999999999888888876655444
No 3
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=96.40 E-value=0.061 Score=46.37 Aligned_cols=241 Identities=11% Similarity=0.181 Sum_probs=161.5
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHhH-HH
Q 040072 80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIRH-QS 156 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~-e~ 156 (354)
.+..|+..|..=+-+.|..+.....++..... ...+.+.. ..++..|+.-- +++++-..+-..|..+..+ +.
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPA----SAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH----HHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCc----HHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 45667777777666777777777777766432 12333332 34444444433 3466677777778887777 88
Q ss_pred HHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHH
Q 040072 157 VARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLG 236 (354)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLg 236 (354)
....+.....+..+...++.++-++...|..++..+-..++......+... .....- .++.+++.-+++.++..|+
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~~l~~~~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAG---GVEVLV-KLLTSTDSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHHHH
Confidence 888888888888889999999999999999999999877776666666643 455554 7899999999999999999
Q ss_pred HHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCCc
Q 040072 237 DILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRA 316 (354)
Q Consensus 237 elLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~ 316 (354)
.|.....+ ..+.+-+..-+..++.+|++.+..++..|...+--+.+ .++.....+... ..+..|-++..+ .
T Consensus 154 ~l~~~~~~---~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~--~~i~~L~~ll~~-~ 224 (252)
T 4hxt_A 154 NIASGPDE---AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIAS---GPTSAIKAIVDA--GGVEVLQKLLTS-T 224 (252)
T ss_dssp HHTTSCHH---HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTT---SBHHHHHHHHHT--THHHHHHHGGGC-S
T ss_pred HHHcCCHH---HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHc---CCHHHHHHHHHC--CCHHHHHHHHCC-C
Confidence 99864332 22344457889999999999999999999888776665 234444444432 233333333332 3
Q ss_pred ccccHHHHHHHHHHHhcCCCCC
Q 040072 317 NEQFEADKLLVIREIATLDLNE 338 (354)
Q Consensus 317 DeqF~dEK~~lI~~I~~L~~~~ 338 (354)
|+....+=...+..|..-++..
T Consensus 225 ~~~v~~~a~~~L~~l~~~~~~~ 246 (252)
T 4hxt_A 225 DSEVQKEAQRALENIKSGGWLE 246 (252)
T ss_dssp CHHHHHHHHHHHHHHHHTCBCC
T ss_pred cHHHHHHHHHHHHHHHcCCCcc
Confidence 4444444444455554444433
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=96.15 E-value=0.025 Score=49.47 Aligned_cols=195 Identities=13% Similarity=0.119 Sum_probs=137.5
Q ss_pred HHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHH
Q 040072 73 REFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARE 150 (354)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRe 150 (354)
..+...+.+..|+..|..=+-+.|..+..+..++...... ..+.+.. ...+..|+.-- +++++--.+-..|..
T Consensus 48 ~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~ 122 (252)
T 4db8_A 48 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSN 122 (252)
T ss_dssp HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4566778899999998877766777777777777653221 1233322 24444444433 355666677777777
Q ss_pred HHhHHHHH-HHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhh
Q 040072 151 CIRHQSVA-RYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKR 229 (354)
Q Consensus 151 cik~e~la-~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkR 229 (354)
...++... ..+.....+..+.+.++.++-++...|..++..+-...+......+..+ .....- .++.+++.-++.
T Consensus 123 l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~ 198 (252)
T 4db8_A 123 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQ 198 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HGGGCSSHHHHH
T ss_pred hhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCC---CHHHHH-HHHCCCCHHHHH
Confidence 77766666 7777777888888999999999999999999998876665555555433 344453 788999999999
Q ss_pred hhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceeccee
Q 040072 230 HAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHV 279 (354)
Q Consensus 230 QSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhv 279 (354)
.++..|+.+.. .+... ...+-+..-+..++.+|++.+..+|-+|..+
T Consensus 199 ~a~~~L~~l~~--~~~~~-~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~ 245 (252)
T 4db8_A 199 EALWALSNIAS--GGNEQ-KQAVKEAGALEKLEQLQSHENEKIQKEAQEA 245 (252)
T ss_dssp HHHHHHHHHTT--SCHHH-HHHHHHTTHHHHHHTTTTCSSSHHHHTHHHH
T ss_pred HHHHHHHHHhc--CCHHH-HHHHHHCCcHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999983 22222 2334456788999999999988888777543
No 5
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=94.99 E-value=0.55 Score=44.10 Aligned_cols=197 Identities=15% Similarity=0.150 Sum_probs=135.5
Q ss_pred HhhcHHHHHHHhCCC-CCCCcchhHHHHHHHHhhcc-cCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHH
Q 040072 76 FKEDTLRLLIASLPK-LAMGPRRDATHVVANLQRQR-VDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIAREC 151 (354)
Q Consensus 76 ~~~dll~~Li~~l~~-L~fE~RKdv~~If~~llr~~-~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRec 151 (354)
...+.+..|+..+.. -+-+.|+.++..+.++.+.. ...+ ...+ ..++..|+..- +++++...+...|+.+
T Consensus 146 ~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~---~~~~---~~~l~~L~~~l~~~~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE---FAKV---SPCLNVLSWLLFVSDTDVLADACWALSYL 219 (450)
T ss_dssp HHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC---GGGT---GGGHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC---HHHH---HHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 345678888888884 56778888888888888744 2211 1222 33444444433 2445555556666666
Q ss_pred HhH-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 040072 152 IRH-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRH 230 (354)
Q Consensus 152 ik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (354)
..+ +.....+...+.+..+.+.+..++-++...|..++..+...+.......+..+ .....- .++.+++.-+|+.
T Consensus 220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~ll~~~~~~vr~~ 295 (450)
T 2jdq_A 220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS---ALQSLL-HLLSSPKESIKKE 295 (450)
T ss_dssp TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHTTCSSHHHHHH
T ss_pred HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc---cHHHHH-HHHcCCCHHHHHH
Confidence 654 34445566667788888888888999999999999998887665554444433 445553 7899999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 231 AVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 231 SLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
++..||.+.. .+...+...+ +..-+..++.+|++....+|.+|..+.--++.
T Consensus 296 a~~~L~~l~~--~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 296 ACWTISNITA--GNRAQIQTVI-DANIFPALISILQTAEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHTT--SCHHHHHHHH-HTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHc
Confidence 9999999984 3333333333 34678889999999998899988877766654
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=94.46 E-value=0.18 Score=42.80 Aligned_cols=184 Identities=13% Similarity=0.110 Sum_probs=123.2
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHH-hHHHHHH
Q 040072 83 LLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECI-RHQSVAR 159 (354)
Q Consensus 83 ~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLReci-k~e~la~ 159 (354)
.|+.-|..=+-+.|..+.....++.+.... ..+.+.. ..++..|+..- +++++-..+-..|..+. ..+....
T Consensus 16 ~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (210)
T 4db6_A 16 QMVQQLNSPDQQELQSALRKLSQIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (210)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHHHHTSCHH----HHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHcCCHH----HHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence 333334444455666666666666542211 1222222 23344443332 24566666666777766 3556667
Q ss_pred HHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072 160 YVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239 (354)
Q Consensus 160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL 239 (354)
.+.....+..+.+.++.++-++...|..++..+-..++......+..+ .+...- .++.+++.-+++.++..|+.+.
T Consensus 91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~a~~aL~~l~ 166 (210)
T 4db6_A 91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIA 166 (210)
T ss_dssp HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---cHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Confidence 777777888889999999999999999999999877766665655543 455553 7899999999999999999999
Q ss_pred cc-cccHHHHHHHhcChhhHHHHHHHhccCCcCcceeccee
Q 040072 240 LD-RSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHV 279 (354)
Q Consensus 240 ld-r~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhv 279 (354)
.. +.+ ...+.+..-+..+..+|.+.+..+|-+|...
T Consensus 167 ~~~~~~----~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~a 203 (210)
T 4db6_A 167 SGGNEQ----KQAVKEAGALEKLEQLQSHENEKIQKEAQEA 203 (210)
T ss_dssp TSCHHH----HHHHHHTTHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred cCCcHH----HHHHHHCCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 75 322 2445556788899999999888888776543
No 7
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=93.84 E-value=0.78 Score=45.07 Aligned_cols=199 Identities=13% Similarity=0.099 Sum_probs=136.7
Q ss_pred HhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHh
Q 040072 76 FKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIR 153 (354)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik 153 (354)
...+.+..|+..+..-+-+.|+.++....++.+..... +..... ..++..|+.-- +++++-..+-..|..+..
T Consensus 212 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~--~~~~~~---~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~ 286 (530)
T 1wa5_B 212 LQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQ--PDWSVV---SQALPTLAKLIYSMDTETLVDACWAISYLSD 286 (530)
T ss_dssp HHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSC--CCHHHH---GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHS
T ss_pred HHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCC--CcHHHH---HhHHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 34467888888887766677888888888888754111 111111 23333333322 345555555666666554
Q ss_pred H-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhH
Q 040072 154 H-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAV 232 (354)
Q Consensus 154 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (354)
. +.....++....+..+..++..++-++...|..++..+.+.+......++..+ +...+- .+|.+++.-++..++
T Consensus 287 ~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~vr~~A~ 362 (530)
T 1wa5_B 287 GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAG---VLPALR-LLLSSPKENIKKEAC 362 (530)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHTTCSCHHHHHHHH
T ss_pred CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcc---hHHHHH-HHHcCCCHHHHHHHH
Confidence 3 44555666667788888888888889999999999998887776666666543 445553 789999999999999
Q ss_pred HHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeC
Q 040072 233 KLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVAN 286 (354)
Q Consensus 233 KLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN 286 (354)
..|+.|.. .+...+..++ +..-+..++.+|.+.+..+|.+|...+.-+...
T Consensus 363 ~aL~~l~~--~~~~~~~~~~-~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 363 WTISNITA--GNTEQIQAVI-DANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHTT--SCHHHHHHHH-HTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCHHHHHHHH-HCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 99999874 3334443333 566788999999999888998888777666543
No 8
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.20 E-value=1.7 Score=37.69 Aligned_cols=208 Identities=13% Similarity=0.111 Sum_probs=136.2
Q ss_pred CCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC--CchhhhhHhHHHHHHHh-HHHHHHHHhcchh
Q 040072 90 KLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE--DGDVALTYGAIARECIR-HQSVARYVLESEH 166 (354)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik-~e~la~~iL~~~~ 166 (354)
.=+-+.|..+.....+++... .+..+.+.. ..++..|+.--. ++++-..+-..|..+.. .+.....+.....
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~----~~~~~~~~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~ 97 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDG----NEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGA 97 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHH----HHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTH
T ss_pred CCCHHHHHHHHHHHHHHHcCC----CchHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence 335566666666665555431 112333332 344455544432 35666666777777776 5666777777778
Q ss_pred HHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHH
Q 040072 167 MKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSA 246 (354)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~ 246 (354)
+..+...++.++-++...|..++..+-..+......++... .....- .+|.+++.-+++.++..|+.|......
T Consensus 98 i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~lL~~~~~~v~~~a~~~L~~l~~~~~~-- 171 (252)
T 4db8_A 98 LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG---ALPALV-QLLSSPNEQILQEALWALSNIASGGNE-- 171 (252)
T ss_dssp HHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHHHHHHHHHHHHTTSCHH--
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCC---CHHHHH-HHHhCCCHHHHHHHHHHHHHHHcCChH--
Confidence 88888899989999999999999888766554435555543 344453 789999999999999999999964322
Q ss_pred HHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCC
Q 040072 247 VMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNID 314 (354)
Q Consensus 247 vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d 314 (354)
....+.+..-+..++.+|++++..++..|..++--++.. ++.....+.. ...+.-|-+...+
T Consensus 172 -~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~---~~~~~~~~~~--~g~i~~L~~ll~~ 233 (252)
T 4db8_A 172 -QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQKQAVKE--AGALEKLEQLQSH 233 (252)
T ss_dssp -HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS---CHHHHHHHHH--TTHHHHHHTTTTC
T ss_pred -HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC---CHHHHHHHHH--CCcHHHHHHHhCC
Confidence 223444567899999999999999999998877766632 2333333332 2345555555443
No 9
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.10 E-value=1 Score=37.94 Aligned_cols=159 Identities=10% Similarity=0.089 Sum_probs=111.8
Q ss_pred HHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC--CchhhhhHhHHHH
Q 040072 72 TREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE--DGDVALTYGAIAR 149 (354)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLR 149 (354)
...+...+.+..|+..|..=+-+.|..+.....++...... ..+.+.. ...+..|+.--. ++++--.+-..|.
T Consensus 47 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~----~~~~i~~-~g~i~~L~~lL~~~~~~v~~~a~~~L~ 121 (210)
T 4db6_A 47 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE----QIQAVID-AGALPALVQLLSSPNEQILQEALWALS 121 (210)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHH-TTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcH----HHHHHHH-CCCHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 35566778899999998876777788888888877643211 1222222 233444433333 4455556666666
Q ss_pred HHH-hHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchh
Q 040072 150 ECI-RHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITK 228 (354)
Q Consensus 150 eci-k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtk 228 (354)
... ..+...+.++....+..+.+.++.++-++...|..++..+...++.....+...+ .+...- .|+.+++.-++
T Consensus 122 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~i~~L~-~ll~~~~~~v~ 197 (210)
T 4db6_A 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG---ALEKLE-QLQSHENEKIQ 197 (210)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT---HHHHHH-HGGGCSCHHHH
T ss_pred HHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHhCCCHHHH
Confidence 655 3455566777788888999999999999999999999999887676666665554 455554 79999999999
Q ss_pred hhhHHHHHHHh
Q 040072 229 RHAVKLLGDIL 239 (354)
Q Consensus 229 RQSLKLLgelL 239 (354)
++++..|+.|-
T Consensus 198 ~~a~~aL~~l~ 208 (210)
T 4db6_A 198 KEAQEALEKLQ 208 (210)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=91.36 E-value=5.5 Score=41.48 Aligned_cols=186 Identities=13% Similarity=0.176 Sum_probs=114.4
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHH--HHHHHh-HHH-HH
Q 040072 83 LLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAI--ARECIR-HQS-VA 158 (354)
Q Consensus 83 ~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~m--LRecik-~e~-la 158 (354)
.++..|..=+-..|+.++.+.+.+.+.. +...-|+++..|+..-.+++...-.|.+ |+..++ ... +.
T Consensus 94 ~ll~~l~~~~~~vr~~~a~~i~~ia~~~---------~~~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~ 164 (852)
T 4fdd_A 94 ECLNNIGDSSPLIRATVGILITTIASKG---------ELQNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILD 164 (852)
T ss_dssp HHHTTTTCSSHHHHHHHHHHHHHHHHHT---------TTTTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhc---------CccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhc
Confidence 3444444333345666666666666643 2233589999998887776544333332 111111 110 10
Q ss_pred HHHhc---chhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHH
Q 040072 159 RYVLE---SEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLL 235 (354)
Q Consensus 159 ~~iL~---~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL 235 (354)
.--+. ...+-.|++.++.++-+|-.-|...+..++..+.. -+..+.+.+....- .++.+++--+|+++++.|
T Consensus 165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~----~~~~~~~~~l~~l~-~~~~d~~~~vr~~a~~~L 239 (852)
T 4fdd_A 165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ----ALMLHIDSFIENLF-ALAGDEEPEVRKNVCRAL 239 (852)
T ss_dssp HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH----HHHTSHHHHHHHHH-HHHTCCCHHHHHHHHHHH
T ss_pred hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHHHHH-HHcCCCCHHHHHHHHHHH
Confidence 00000 11334556666778888888888888766654332 23445666777664 788899999999999999
Q ss_pred HHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeC
Q 040072 236 GDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVAN 286 (354)
Q Consensus 236 gelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN 286 (354)
+.+.- .....+..|+. .-+..++.+++|+...++.+|...+.-++..
T Consensus 240 ~~l~~--~~~~~~~~~l~--~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~ 286 (852)
T 4fdd_A 240 VMLLE--VRMDRLLPHMH--NIVEYMLQRTQDQDENVALEACEFWLTLAEQ 286 (852)
T ss_dssp HHHHH--HCHHHHGGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHH--hCHHHHHHHHH--HHHHHHHHHccCCcHHHHHHHHHHHHHHhcc
Confidence 99985 34556666665 3567788889999999999998666554433
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=91.33 E-value=1.9 Score=42.07 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=132.6
Q ss_pred hhcHHHHHHHhC-CCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHh
Q 040072 77 KEDTLRLLIASL-PKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIR 153 (354)
Q Consensus 77 ~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik 153 (354)
..+.+..|+..| ..-+.+.++.++....++.+..... ..... ..++..|+.-- .++++...+-..|..+..
T Consensus 200 ~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~---~~~~~---~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~ 273 (528)
T 4b8j_A 200 ANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP---SFEQT---RPALPALARLIHSNDEEVLTDACWALSYLSD 273 (528)
T ss_dssp HTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC---CHHHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred HCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC---cHHHH---HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence 445678888888 5556677888888888888754221 12221 44455544433 344555555555555554
Q ss_pred H-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCC-Ccchhhhh
Q 040072 154 H-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESS-SYITKRHA 231 (354)
Q Consensus 154 ~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~-NYVtkRQS 231 (354)
+ +.....++....+..+...+..++-+|...|..++..+.+.........+..+ ....+- .+|.++ +--+++.+
T Consensus 274 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~~v~~~A 349 (528)
T 4b8j_A 274 GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQ---ALPCLL-SLLTQNLKKSIKKEA 349 (528)
T ss_dssp SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT---HHHHHH-HHHHSCCCHHHHHHH
T ss_pred CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhh---hHHHHH-HHHcCCCcHHHHHHH
Confidence 3 33345666667778888888888889999999999999887766666655543 344553 788888 99999999
Q ss_pred HHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeC
Q 040072 232 VKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVAN 286 (354)
Q Consensus 232 LKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN 286 (354)
...|+.|... +.... .++-+..-+..++.+|.+....++-+|...+.-++.+
T Consensus 350 ~~~L~nl~~~--~~~~~-~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 350 CWTISNITAG--NKDQI-QAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHTS--CHHHH-HHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCC--CHHHH-HHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcC
Confidence 9999999852 33333 3344456688888999888888888887766655543
No 12
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=90.26 E-value=1.1 Score=43.87 Aligned_cols=198 Identities=15% Similarity=0.157 Sum_probs=131.3
Q ss_pred cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHh-HH
Q 040072 79 DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIR-HQ 155 (354)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik-~e 155 (354)
+++..|+..+..=+-+.|.++..+..++..... ...+.+.. ..++..|+..- .++++-..+-..|..+.. .+
T Consensus 257 ~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~----~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~ 331 (530)
T 1wa5_B 257 QALPTLAKLIYSMDTETLVDACWAISYLSDGPQ----EAIQAVID-VRIPKRLVELLSHESTLVQTPALRAVGNIVTGND 331 (530)
T ss_dssp GGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCH----HHHHHHHH-TTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCH----HHHHHHHh-cCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCH
Confidence 567777777776666666677777776654221 12333322 23334443333 344455555556665553 35
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHH
Q 040072 156 SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLL 235 (354)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL 235 (354)
.....++....+..+..+++.++.+|...|..++..+-...+..+..++..+ ++..+- .+|.++++-+++.++..|
T Consensus 332 ~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~---~l~~L~-~lL~~~~~~v~~~a~~aL 407 (530)
T 1wa5_B 332 LQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDAN---LIPPLV-KLLEVAEYKTKKEACWAI 407 (530)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---CHHHHH-HHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHhcCCHHHHHHHHHHH
Confidence 5666677777778888899999999999999999988766665555555443 344443 678889999999999999
Q ss_pred HHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 236 GDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 236 gelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
+.+...-....-..+|+-+..-+..+..+|.++...++..|...+.-++.
T Consensus 408 ~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 408 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 99987532100123445566789999999999998898888777765543
No 13
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=90.16 E-value=1.2 Score=44.29 Aligned_cols=201 Identities=13% Similarity=0.147 Sum_probs=115.0
Q ss_pred HHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHH
Q 040072 73 REFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECI 152 (354)
Q Consensus 73 ~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLReci 152 (354)
+.+...+.+..|+..|..=+-+.|..++....++...... .-+++.. -.++..|+.--..++.....-.++|.+.
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~----~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~~~~a~ 230 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSA----FRDLVIK-HGAIDPLLALLAVPDLSTLACGYLRNLT 230 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH----HHHHHHH-TTCHHHHHHTTCSSCGGGSCHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHH----HHHHHHH-cCCcHHHHHHHhccchhHhHHHHHHHHH
Confidence 3455566778888888777777777777766666543211 1122222 1222223222222222111122222222
Q ss_pred -------hHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCC
Q 040072 153 -------RHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSS 224 (354)
Q Consensus 153 -------k~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~N 224 (354)
++. .........+.+-.+...++.++-++..+|...+..+...+........... .....- .||.+++
T Consensus 231 ~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~ 306 (529)
T 3tpo_A 231 WTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKG---VVPQLV-KLLGATE 306 (529)
T ss_dssp HHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTT---CHHHHH-HHHTCSC
T ss_pred HHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhcc---chHHHH-HHhcCCC
Confidence 111 0000011112233444556677778888888888877665544443333332 233443 7899999
Q ss_pred cchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 225 YITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 225 YVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
.-+++.++..||.|... ..-.+..+-+..-+..++.||++++..||-+|..+.--..+
T Consensus 307 ~~v~~~a~~aL~nl~~~---~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~ 364 (529)
T 3tpo_A 307 LPIVTPALRAIGNIVTG---TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITA 364 (529)
T ss_dssp HHHHHHHHHHHHHHTTS---CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHcc---chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999843 23445566677788899999999999999998766543333
No 14
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=89.87 E-value=0.9 Score=44.40 Aligned_cols=198 Identities=12% Similarity=0.125 Sum_probs=123.8
Q ss_pred HhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc---CCchhhhhHhHHHHHHH
Q 040072 76 FKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY---EDGDVALTYGAIARECI 152 (354)
Q Consensus 76 ~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLReci 152 (354)
...+.+..|+..|..=+-+.|..++....++..... ...+.+.. ..++..|+..- .++++.-.+-..|..+.
T Consensus 157 ~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~----~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 157 IDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSP----KCRDLVLA-NGALLPLLAQLNEHTKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCH----HHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCh----hhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334677888888877555666666666666654221 11222322 23444444433 24444445555555554
Q ss_pred hHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhH
Q 040072 153 RHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAV 232 (354)
Q Consensus 153 k~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (354)
.+..........+.+..+...+..++=++..+|..++..+-......+...+... .....- .||.+++--++..++
T Consensus 232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g---~v~~Lv-~lL~~~~~~v~~~a~ 307 (528)
T 4b8j_A 232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG---VCPRLV-ELLLHPSPSVLIPAL 307 (528)
T ss_dssp CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---CHHHHH-HHTTCSCHHHHHHHH
T ss_pred cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC---HHHHHH-HHHcCCChhHHHHHH
Confidence 4422222222345566667777778888888998888887765554444444432 334443 788999989999999
Q ss_pred HHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccC-CcCcceecceeeeeeee
Q 040072 233 KLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDS-NKNIQFESFHVFKLFVA 285 (354)
Q Consensus 233 KLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~-sk~Iq~EAFhvFKvFVA 285 (354)
..||.|... + .-....+-+..-+..++.+|++. +..++.+|..+.--+.+
T Consensus 308 ~~L~nl~~~--~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 308 RTVGNIVTG--D-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHTTS--C-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--C-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 999999852 2 23344455677899999999999 88999998876655554
No 15
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.51 E-value=14 Score=34.61 Aligned_cols=208 Identities=13% Similarity=0.086 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHhhccc-cchHhHH-HHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHH-hCCC
Q 040072 14 ELVKLTRELLLYANRTA-ETREKKR-EEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIA-SLPK 90 (354)
Q Consensus 14 elVr~l~e~l~~l~~~~-~~~~~K~-~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~-~l~~ 90 (354)
+-++.+++++..|.+.. ..+.... ..-.++-...+..+..++.+ ..-++.+...+-+..|+. .|..
T Consensus 25 d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-----------~dna~~~~~~G~l~~Lv~~lL~s 93 (296)
T 1xqr_A 25 GEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-----------MDNAADFCQLSGMHLLVGRYLEA 93 (296)
T ss_dssp HHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-----------HHHHHHHHHTTHHHHHHHTTTTC
T ss_pred CHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-----------hhhHHHHHHcCCHHHHHHHHHcC
Confidence 44777788888887641 1111110 00013344445555555532 124566777888888888 8887
Q ss_pred CCCCcchhHHHHHHHHhhcccCCCcchhHHhhhc---hhHHHHHHhhcCCchhhhhHhHHHHHHHh-HHHHHHHHhcchh
Q 040072 91 LAMGPRRDATHVVANLQRQRVDTKLIACTYLEAN---FDIMDTLILGYEDGDVALTYGAIARECIR-HQSVARYVLESEH 166 (354)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gY~~~dial~~G~mLRecik-~e~la~~iL~~~~ 166 (354)
=+-+.|..++.+.+++...... .-+++... |-++..|-.+. ++.+.-.+-.-|--+++ ++.....+.....
T Consensus 94 ~~~~vr~~Aa~~Lg~ia~~n~~----~~~~vv~~g~l~~Ll~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~gg 168 (296)
T 1xqr_A 94 GAAGLRWRAAQLIGTCSQNVAA----IQEQVLGLGALRKLLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDG 168 (296)
T ss_dssp SSHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred CCHHHHHHHHHHHHHHHhCCHH----HHHHHHHCCCHHHHHHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCC
Confidence 6777788888888888753211 12233321 33333333221 23333233233333333 3333444555555
Q ss_pred HHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcc
Q 040072 167 MKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLD 241 (354)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLld 241 (354)
+-.+...++.+++.+-.+|...+..+...+......+...+ ++...- .||.+++--++.+++..|+.|+.+
T Consensus 169 i~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g---~i~~Lv-~LL~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 169 FSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG---MVQQLV-ALVRTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTT---HHHHHH-HHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcC---CHHHHH-HHHcCCChhHHHHHHHHHHHHHhC
Confidence 66666777889999999999999999887777777777665 444553 799999999999999999999966
No 16
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=88.71 E-value=2.3 Score=39.81 Aligned_cols=199 Identities=13% Similarity=0.173 Sum_probs=122.3
Q ss_pred HHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC---CchhhhhHhHHHHHH
Q 040072 75 FFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE---DGDVALTYGAIAREC 151 (354)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~---~~dial~~G~mLRec 151 (354)
+...+.+..|+..+..=+-+.|..+.....++...... ..+.+.. ..++..|+.--. ++++...+-..|..+
T Consensus 103 ~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~----~~~~~~~-~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l 177 (450)
T 2jdq_A 103 VIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM----CRDYVLD-CNILPPLLQLFSKQNRLTMTRNAVWALSNL 177 (450)
T ss_dssp HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHH----HHHHHHH-TTCHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHH----HHHHHHH-CCCHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 34467888888888876667777777777777653211 1222222 234444443332 334444444444444
Q ss_pred HhHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 040072 152 IRHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRH 230 (354)
Q Consensus 152 ik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (354)
.++. .-.+..+..+.+..+...+..++=++..+|..++..+-.............. .+...- .++.+++.-++..
T Consensus 178 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~L~-~ll~~~~~~v~~~ 253 (450)
T 2jdq_A 178 CRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAG---VCRRLV-ELLMHNDYKVVSP 253 (450)
T ss_dssp HCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTT---THHHHH-HHTTCSCHHHHHH
T ss_pred hCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcC---cHHHHH-HHHCCCchhHHHH
Confidence 4332 1001111133455566666666667778888888877665444443333332 344453 6888999999999
Q ss_pred hHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 231 AVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 231 SLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
++..||.+.....+ ..+.+-+..-+..++.+|.+++..++.+|....--+.+
T Consensus 254 a~~~L~~l~~~~~~---~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~ 305 (450)
T 2jdq_A 254 ALRAVGNIVTGDDI---QTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITA 305 (450)
T ss_dssp HHHHHHHHTTSCHH---HHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhCChH---HHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 99999999864332 34445566789999999999999999999877766654
No 17
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=85.74 E-value=17 Score=39.92 Aligned_cols=174 Identities=18% Similarity=0.180 Sum_probs=95.7
Q ss_pred CCchhhhhHhHHHHHHHhHHHHHHHHhcc--hhHHHhhhhc----cCCCchhhhhHHHHHHHHHhc-----ChhHHHHHH
Q 040072 136 EDGDVALTYGAIARECIRHQSVARYVLES--EHMKKFFSFL----QIPNFDIASDAQATFKELLTR-----HKSTVAEFL 204 (354)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~~--~~f~~fF~yv----~~~~FdiasDAf~Tfkellt~-----Hk~lvaefl 204 (354)
++||.-...=.+||.++.+=. ..+|.. +.|..+++.+ +.+.-||+.-++.++.+++.+ ....+.+|.
T Consensus 816 ~~Pe~r~~ff~ll~~~~~~~f--~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~~~~~~~~f~ 893 (1023)
T 4hat_C 816 EYPEHRVEFYKLLKVINEKSF--AAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1023)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--HHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHCh--HHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 567777777777777776632 334443 4777777744 689999999999999999962 345777999
Q ss_pred HhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhc---c----------------cccHHHHHHHhcChhhHHHHHHHh
Q 040072 205 SKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILL---D----------------RSNSAVMVKYVSSLDNMRILMNLL 265 (354)
Q Consensus 205 ~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLl---d----------------r~N~~vM~~Yis~~~NLkliM~LL 265 (354)
.+.|-.++.+.-.-+-.+..=..=++.-.+|..++. + .+|..++..|++ ++|
T Consensus 894 ~~~~~~~~~~~~~v~td~~h~~~f~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~---------~~l 964 (1023)
T 4hat_C 894 KNYFFIFVSETFFVLTDSDHKSGFSKQALLLMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLA---------NML 964 (1023)
T ss_dssp HHHHHHHHHHHHHHHHSSSCGGGHHHHHHHHHHHHHHHHTTCCCSCSSCTTSSCTTCCHHHHHHHHHH---------HHH
T ss_pred HHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHHHHHHcCCcccccCCccccCCCCchHHHHHHHHH---------HHH
Confidence 988888876654233333221112222334444332 1 356666666654 344
Q ss_pred ccCCcCc---ceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCCcccccHHHHHH
Q 040072 266 RDSNKNI---QFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLL 326 (354)
Q Consensus 266 ~d~sk~I---q~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~DeqF~dEK~~ 326 (354)
++.-+|+ |++.|+. -+|- .-+.+ .++=..-|+=|+. ++.|..|..|+-|.+||+.
T Consensus 965 ~~~fp~~~~~qi~~fv~-~l~~-~~~~~---~~f~~~lrdfli~-~ke~~~~~~~~~~~~~~~~ 1022 (1023)
T 4hat_C 965 SNAFPHLTSEQIASFLS-ALTK-QCKDL---VVFKGTLRDFLVQ-IKEVGGDPTDYLFAEDKEN 1022 (1023)
T ss_dssp HHHCTTSCHHHHHHHHH-HHHH-TTTCH---HHHHHHHHHHHHH-TTSSSCCGGGGGCC-----
T ss_pred HHhCCCCCHHHHHHHHH-HHHH-ccCCH---HHHHHHHHHHhHH-hHhhcCCChHHHhHHhhhc
Confidence 4333333 4555531 0111 11112 2222223444444 5677787777889999863
No 18
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=84.83 E-value=9.6 Score=38.84 Aligned_cols=110 Identities=10% Similarity=0.090 Sum_probs=68.0
Q ss_pred hhhccCC--CchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHH
Q 040072 171 FSFLQIP--NFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVM 248 (354)
Q Consensus 171 F~yv~~~--~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM 248 (354)
...+..+ +-+|-.-|...+..++..-........ ..+.+..... .++.+++.-.|+.+++.|+++..... ..+
T Consensus 185 ~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~--~~~~ll~~l~-~~~~~~~~~~r~~a~~~l~~l~~~~~--~~~ 259 (861)
T 2bpt_A 185 VQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG--ERNYLMQVVC-EATQAEDIEVQAAAFGCLCKIMSKYY--TFM 259 (861)
T ss_dssp HHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH--HHHHHHHHHH-HHHTCSCHHHHHHHHHHHHHHHHHHG--GGC
T ss_pred HHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChh--HHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHHHHH--HHH
Confidence 3344444 667777777777665421110000000 0122444443 67789999999999999999985432 223
Q ss_pred HHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeC
Q 040072 249 VKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVAN 286 (354)
Q Consensus 249 ~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN 286 (354)
..|+.. .-+.+++..+.|....++..|+..+.-++..
T Consensus 260 ~~~l~~-~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~ 296 (861)
T 2bpt_A 260 KPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICEE 296 (861)
T ss_dssp HHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 334431 4466778888999999999999888777654
No 19
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=83.66 E-value=28 Score=36.56 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=121.7
Q ss_pred hcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc---CCchhhhhHhHHHHHHHhH
Q 040072 78 EDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY---EDGDVALTYGAIARECIRH 154 (354)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLRecik~ 154 (354)
.+.+..|+..|..=+-+.|..++....++-... ....-+...++++..|+..- +++++-..+-..|+.+.++
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~ 223 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH 223 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSH-----HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCC-----hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 556677776665445556776766666665422 11223444567777766543 4778888888899998888
Q ss_pred HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHH
Q 040072 155 QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKL 234 (354)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (354)
+.....+.....+..+.+.++.++=++-..|..++..+-..+......+...+ .+..+- .||.++|--.++.++..
T Consensus 224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g---~v~~Lv-~lL~~~~~~v~~~a~~a 299 (780)
T 2z6g_A 224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 299 (780)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 77777777777888899999988888999999999998776544333333332 344453 78888887778888888
Q ss_pred HHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCc
Q 040072 235 LGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNK 270 (354)
Q Consensus 235 LgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk 270 (354)
|+.+-. .|-......+.. ..+..++.+|++.+.
T Consensus 300 L~~La~--~~~e~~~~i~~~-~~i~~Lv~lL~~~~~ 332 (780)
T 2z6g_A 300 LQILAY--GNQESKLIILAS-GGPQALVNIMRTYTY 332 (780)
T ss_dssp HHHHHT--TCHHHHHHHHTT-THHHHHHHHHTTCCC
T ss_pred HHHHhc--CChHHHHHHHHc-CCHHHHHHHHhcCCH
Confidence 885553 344444444443 667888888876653
No 20
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=83.57 E-value=28 Score=32.25 Aligned_cols=153 Identities=8% Similarity=0.058 Sum_probs=82.1
Q ss_pred chhHHHHHHhhcCCc--hhhh--hHhHHHHHHHh---HHHHHHHHhcchhHHHhhhhccCC--CchhhhhHHHHHHHHHh
Q 040072 124 NFDIMDTLILGYEDG--DVAL--TYGAIARECIR---HQSVARYVLESEHMKKFFSFLQIP--NFDIASDAQATFKELLT 194 (354)
Q Consensus 124 ~peil~~L~~gY~~~--dial--~~G~mLRecik---~e~la~~iL~~~~f~~fF~yv~~~--~FdiasDAf~Tfkellt 194 (354)
-|+++..|+....++ +... .+-..|+...+ .+.+..++ ...+..+...++.+ +=+|-.-|..++..++.
T Consensus 126 w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~ 203 (462)
T 1ibr_B 126 WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRKEEPSNNVKLAATNALLNSLE 203 (462)
T ss_dssp CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHH
Confidence 488888888777554 3222 22222333322 11110000 01223344455555 55666666666666542
Q ss_pred cChhHHHHHHHhhHHH-HHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcc
Q 040072 195 RHKSTVAEFLSKNYDW-FFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQ 273 (354)
Q Consensus 195 ~Hk~lvaefl~~Nyd~-Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq 273 (354)
--+...... .+.. +..... .++.+++--.|+.+++.|+.+..... ..+..|+.. .-+..++..++|....++
T Consensus 204 ~~~~~~~~~---~~~~~l~~~l~-~~~~~~~~~vr~~~~~~l~~l~~~~~--~~~~~~~~~-~l~~~~~~~~~~~~~~v~ 276 (462)
T 1ibr_B 204 FTKANFDKE---SERHFIMQVVC-EATQCPDTRVRVAALQNLVKIMSLYY--QYMETYMGP-ALFAITIEAMKSDIDEVA 276 (462)
T ss_dssp TTHHHHTSH---HHHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHHCG--GGCTTTTTT-THHHHHHHHHHCSSHHHH
T ss_pred HHHHhhhhh---HHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHcCCchHHH
Confidence 111000000 0111 233332 57788888899999999999986442 333344442 456667778889888888
Q ss_pred eecceeeeeeee
Q 040072 274 FESFHVFKLFVA 285 (354)
Q Consensus 274 ~EAFhvFKvFVA 285 (354)
..|+..+.-++.
T Consensus 277 ~~a~~~l~~~~~ 288 (462)
T 1ibr_B 277 LQGIEFWSNVCD 288 (462)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888876655543
No 21
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=82.40 E-value=4.8 Score=38.58 Aligned_cols=149 Identities=16% Similarity=0.123 Sum_probs=89.2
Q ss_pred chhhhhHhHHHHHHHhH----HHHHHHHhcchhHHHhhhhccCCCc-hhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHH
Q 040072 138 GDVALTYGAIARECIRH----QSVARYVLESEHMKKFFSFLQIPNF-DIASDAQATFKELLTRHKSTVAEFLSKNYDWFF 212 (354)
Q Consensus 138 ~dial~~G~mLRecik~----e~la~~iL~~~~f~~fF~yv~~~~F-diasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff 212 (354)
+++-..+-..|+-+..+ +.....+.....+..+.+.++.++. ++...|..++..+-. +......++..+ +.
T Consensus 324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~-~~~~~~~~~~~~---~i 399 (529)
T 1jdh_A 324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL-CPANHAPLREQG---AI 399 (529)
T ss_dssp HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT-SGGGHHHHHHTT---HH
T ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc-ChhhhHHHHHcC---CH
Confidence 45544444555544432 2233455555566677777777764 888888888888765 333334444443 23
Q ss_pred HHHHHhhccCCCcchhh----------------------hhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCc
Q 040072 213 QEYNSQLLESSSYITKR----------------------HAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNK 270 (354)
Q Consensus 213 ~~yn~~Ll~s~NYVtkR----------------------QSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk 270 (354)
...- .++.++++-+|+ .++.-|+.+..++.|.. .+.+..-+..+..+|.|...
T Consensus 400 ~~L~-~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~----~l~~~~~v~~l~~ll~~~~~ 474 (529)
T 1jdh_A 400 PRLV-QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRI----VIRGLNTIPLFVQLLYSPIE 474 (529)
T ss_dssp HHHH-HHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHH----HHHHTTCHHHHHHGGGCSCH
T ss_pred HHHH-HHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhcCchHHH----HHhccCCccHHHHHHcCCch
Confidence 3332 566666666665 45566666766554433 33345678899999999999
Q ss_pred CcceecceeeeeeeeCCCCChHHHHHHHH
Q 040072 271 NIQFESFHVFKLFVANQNKPPEIISVLIA 299 (354)
Q Consensus 271 ~Iq~EAFhvFKvFVANP~K~~~I~~IL~~ 299 (354)
+|+..|-..+.-+.. .++....+..
T Consensus 475 ~v~~~a~~~l~~l~~----~~~~~~~i~~ 499 (529)
T 1jdh_A 475 NIQRVAAGVLCELAQ----DKEAAEAIEA 499 (529)
T ss_dssp HHHHHHHHHHHHHTT----SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 999888766555442 2444444444
No 22
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=82.40 E-value=19 Score=38.85 Aligned_cols=200 Identities=12% Similarity=0.114 Sum_probs=124.4
Q ss_pred HHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhc---hhHHHHHHhhcCCchhhhhHhHH
Q 040072 71 LTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEAN---FDIMDTLILGYEDGDVALTYGAI 147 (354)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gY~~~dial~~G~m 147 (354)
-++.+...+.+..|+..+..=+-+.|+.++.+..++-... ...+.+..+ |-++..|-.|.... --.-+..+
T Consensus 487 r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~-----~~r~~Vv~~Gaip~Lv~LL~s~~~~~-k~~Aa~AL 560 (810)
T 3now_A 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLK-----ELRGKVVQEGGVKALLRMALEGTEKG-KRHATQAL 560 (810)
T ss_dssp HHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTHHHHHHHHHHSSCHHH-HHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----HHHHHHHHCCCHHHHHHHHccCCHHH-HHHHHHHH
Confidence 3478888999999999998877788999999988886422 234555553 55555655553210 01112222
Q ss_pred HHHHHhHHHHHHHHhc----chhHHHhhhhccCCCc-hhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccC
Q 040072 148 ARECIRHQSVARYVLE----SEHMKKFFSFLQIPNF-DIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLES 222 (354)
Q Consensus 148 LRecik~e~la~~iL~----~~~f~~fF~yv~~~~F-diasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s 222 (354)
-+-|+-... ..++. .+.+-.+.+.+..+.- ....+|...+.-|.+.........+... .+...- .|+.+
T Consensus 561 ~nL~~~~~p--~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG---~l~~Lv-~LL~s 634 (810)
T 3now_A 561 ARIGITINP--EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQ---GVSKIE-YYLME 634 (810)
T ss_dssp HHHHHHSCH--HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHS
T ss_pred HHHhcCCCh--hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcC---CHHHHH-HHHcC
Confidence 222221111 00110 0123333444443222 2234677777777665544444444433 455564 78899
Q ss_pred CCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 223 SSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 223 ~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
+|--.++.|+.+|+.|...+. ...+++.+..-++.+..||.+.+..+|-+|--.+--..+
T Consensus 635 ~~~~Vq~~A~~~L~NLa~~~~---~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~ 694 (810)
T 3now_A 635 DHLYLTRAAAQCLCNLVMSED---VIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS 694 (810)
T ss_dssp CCTTHHHHHHHHHHHHTTSHH---HHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCChH---HHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence 999999999999999997554 567788667899999999999999999998755544444
No 23
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=82.23 E-value=16 Score=35.99 Aligned_cols=198 Identities=14% Similarity=0.159 Sum_probs=126.4
Q ss_pred HHhhcHHHHHHHhCCCCCCCc-----chhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhh--cCCchhhhhHhHH
Q 040072 75 FFKEDTLRLLIASLPKLAMGP-----RRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILG--YEDGDVALTYGAI 147 (354)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~-----RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~m 147 (354)
+...+.+..|+..|..-+.+. .+.++...+++.+.+.. .+....+ ..++..|+.. .+++++-..+-..
T Consensus 200 i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~--~~~~~~~---~~~lp~L~~LL~~~~~~v~~~a~~a 274 (529)
T 3tpo_A 200 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP--APPLDAV---EQILPTLVRLLHHNDPEVLADSCWA 274 (529)
T ss_dssp HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTT--CCCHHHH---HHHHHHHHHHTTSSCHHHHHHHHHH
T ss_pred HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccc--hhhHHHH---hhHHHHHHHHhcCCcHHHHHHHHHH
Confidence 344456677777776544433 23344445555553321 1112221 2344444333 3455555555555
Q ss_pred HHHHHhH-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcc
Q 040072 148 ARECIRH-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYI 226 (354)
Q Consensus 148 LRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYV 226 (354)
|+.+..+ +.....+.....+..+.+++..++-++..-|..++..+.+.........+... ....+- .||.+++--
T Consensus 275 L~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g---~l~~L~-~LL~~~~~~ 350 (529)
T 3tpo_A 275 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVFP-SLLTNPKTN 350 (529)
T ss_dssp HHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGHH-HHTTCSSHH
T ss_pred HHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcc---cHHHHH-HHHcCCCHH
Confidence 6655543 34555667777788888899999999999999999999887766555555543 333443 789999999
Q ss_pred hhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeee
Q 040072 227 TKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFV 284 (354)
Q Consensus 227 tkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV 284 (354)
+++.+.-.|+.|-..... ....+-+..-+..++.+|++.+..+|-+|-....=+.
T Consensus 351 i~~~a~~aL~nl~~~~~~---~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~ 405 (529)
T 3tpo_A 351 IQKEATWTMSNITAGRQD---QIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYT 405 (529)
T ss_dssp HHHHHHHHHHHHHTSCHH---HHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHH---HHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999854332 2233445667888899999999989988876554443
No 24
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=82.16 E-value=2.2 Score=44.44 Aligned_cols=189 Identities=11% Similarity=0.167 Sum_probs=111.3
Q ss_pred HHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC--CchhhhhHhHHHHHHHhHHHHHHH
Q 040072 83 LLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE--DGDVALTYGAIARECIRHQSVARY 160 (354)
Q Consensus 83 ~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~la~~ 160 (354)
.++..+..-+-+.|.-++..+.+.+++. +..+. -..+..|-..|+.+-. ++.+-..++..+...++++...
T Consensus 52 ~il~~~~~~~~~vR~~a~~~Lkn~i~~~----w~~~~-~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-- 124 (852)
T 4fdd_A 52 FVLTKLKSEDEPTRSLSGLILKNNVKAH----FQNFP-NGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ-- 124 (852)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHHTTTS----GGGCC-HHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT--
T ss_pred HHHhccCCCChHHHHHHHHHHHHHHHHc----cCCCC-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc--
Confidence 3444444555566666666666666432 11110 0113445555555543 3455666677777666665111
Q ss_pred HhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHH-HHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072 161 VLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVA-EFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239 (354)
Q Consensus 161 iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lva-efl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL 239 (354)
-..+.+-.+++.++.++..+---|+.++..+......... +.+....+.++..+- +++.+++--+|..+++-|+.++
T Consensus 125 -~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~-~~l~~~~~~vR~~A~~aL~~~~ 202 (852)
T 4fdd_A 125 -NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFL-QFFKHSSPKIRSHAVACVNQFI 202 (852)
T ss_dssp -TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHT-TTTTCSSHHHHHHHHHHHHTTT
T ss_pred -ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHH
Confidence 0112334555667777777766777777777654433221 122223556666665 7888999999999999999887
Q ss_pred cccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeee
Q 040072 240 LDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFV 284 (354)
Q Consensus 240 ldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFV 284 (354)
.... ..+..++ ++.+..+..++.|++..++-.|+..+--++
T Consensus 203 ~~~~--~~~~~~~--~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~ 243 (852)
T 4fdd_A 203 ISRT--QALMLHI--DSFIENLFALAGDEEPEVRKNVCRALVMLL 243 (852)
T ss_dssp TTTC--HHHHTSH--HHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred hccc--HHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 5433 2222222 356778888889988888888888775444
No 25
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=79.32 E-value=12 Score=36.83 Aligned_cols=195 Identities=15% Similarity=0.153 Sum_probs=126.2
Q ss_pred HHhhcHHHHHHHhCCCCCCCc-----chhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhh--cCCchhhhhHhHH
Q 040072 75 FFKEDTLRLLIASLPKLAMGP-----RRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILG--YEDGDVALTYGAI 147 (354)
Q Consensus 75 i~~~dll~~Li~~l~~L~fE~-----RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~m 147 (354)
+...+.+..|+..+..-+.+. .+.++....++.+.+.. .+....+ ..++..|+.. .+++++-..+-..
T Consensus 181 v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~--~~~~~~~---~~~lp~L~~LL~~~~~~v~~~A~~a 255 (510)
T 3ul1_B 181 VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP--APPLDAV---EQILPTLVRLLHHNDPEVLADSCWA 255 (510)
T ss_dssp HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSS--CCCHHHH---HHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccc--hhHHHHH---HhHHHHHHHHHhcCCHHHHHHHHHH
Confidence 344566777888877655443 23344444455543321 1112222 2344444433 3455665566666
Q ss_pred HHHHHhHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcc
Q 040072 148 ARECIRHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYI 226 (354)
Q Consensus 148 LRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYV 226 (354)
|+.+..+. .....+.....+..+.+++..++-.+..-|..++..+.+.........+... ....+- .||.+++--
T Consensus 256 L~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g---~l~~L~-~LL~~~~~~ 331 (510)
T 3ul1_B 256 ISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAG---ALAVFP-SLLTNPKTN 331 (510)
T ss_dssp HHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---GGGGCC--CTTCSSHH
T ss_pred HHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhcc---chHHHH-HHhcCCCHH
Confidence 66666543 3445666777788888899999999999999999999887766655555543 233443 789999999
Q ss_pred hhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeee
Q 040072 227 TKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFK 281 (354)
Q Consensus 227 tkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFK 281 (354)
+++.+...|+.|..... -....|-+..-+..++.+|++.+..+|-||-....
T Consensus 332 v~~~A~~aL~nl~a~~~---~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~ 383 (510)
T 3ul1_B 332 IQKEATWTMSNITAGRQ---DQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT 383 (510)
T ss_dssp HHHHHHHHHHHHTTSCH---HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcH---HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999985433 23344555677888999999999888888865543
No 26
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=78.95 E-value=4.6 Score=37.88 Aligned_cols=167 Identities=13% Similarity=0.157 Sum_probs=108.9
Q ss_pred HHHHHHhcchhHHHhhhhccC-CCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHH
Q 040072 156 SVARYVLESEHMKKFFSFLQI-PNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKL 234 (354)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~-~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (354)
.....++....+..+...++. ++=++...|..++-.+...++.....|...+ .+.-.- .+|.+++..+++.+.-+
T Consensus 115 ~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~g---gi~~L~-~lL~~~d~~v~~~A~~a 190 (296)
T 1xqr_A 115 AIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLD---GFSVLM-RAMQQQVQKLKVKSAFL 190 (296)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCC---CHHHHH-HHHcCCCHHHHHHHHHH
Confidence 344455555555555555553 3567778888888887776777666777765 344553 78999999999999999
Q ss_pred HHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHh----hc
Q 040072 235 LGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFF----SD 310 (354)
Q Consensus 235 LgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl----~~ 310 (354)
|+.+..... -..+++-+..-++.++.||++++..+|-.|...+--++.. .+.........+..|...| +.
T Consensus 191 Ls~L~~~~~---~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~---~~~~~~~~~~~~~~l~~lL~~~~~~ 264 (296)
T 1xqr_A 191 LQNLLVGHP---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD---FPQGVRECREPELGLEELLRHRCQL 264 (296)
T ss_dssp HHHHHHHCG---GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT---CHHHHHHHHCGGGCHHHHHHHHHHH
T ss_pred HHHHHhCCh---HHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC---ChhHHHHHhccHHHHHHHHHHHHHH
Confidence 999986522 1234566778899999999999999999888877666654 2222222111111122222 11
Q ss_pred CCCCCcccccHHHHHHHHHHHhcCC
Q 040072 311 FNIDRANEQFEADKLLVIREIATLD 335 (354)
Q Consensus 311 f~~d~~DeqF~dEK~~lI~~I~~L~ 335 (354)
.+. -|...+|.++..+-|+.+=
T Consensus 265 lq~---~e~~~e~~~~~~~il~~~f 286 (296)
T 1xqr_A 265 LQQ---HEEYQEELEFCEKLLQTCF 286 (296)
T ss_dssp HTT---CGGGHHHHHHHHHHHHHHC
T ss_pred ccc---hHHHHHHHHHHHHHHHHHc
Confidence 121 1234788999888888863
No 27
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=77.97 E-value=13 Score=32.35 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=103.1
Q ss_pred HhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC-Cchhhh------hHhHHHHHHHhHHHHH
Q 040072 86 ASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE-DGDVAL------TYGAIARECIRHQSVA 158 (354)
Q Consensus 86 ~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~-~~dial------~~G~mLRecik~e~la 158 (354)
..+..=+|..|+.+..-...++.... +...- ...+++..|...-. +++... ..|.+.+.. +. .+.
T Consensus 22 ~~l~s~~w~~R~~a~~~L~~l~~~~~--~~~~~----~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l-~~-~~~ 93 (242)
T 2qk2_A 22 DKLEEKKWTLRKESLEVLEKLLTDHP--KLENG----EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGL-AK-RFS 93 (242)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHCS--SBCCC----CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHH-GG-GGH
T ss_pred hhhccCCHHHHHHHHHHHHHHHccCC--CCCCC----CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH-hh-hHH
Confidence 34445677778877777777765311 11111 12456666655552 443322 222222111 10 001
Q ss_pred HHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 040072 159 RYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDI 238 (354)
Q Consensus 159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgel 238 (354)
.++ ...+-.+++.+.-++=.|-.-|..++..+.... +++.+....- ..+.+.|.-+|..++.+|+.+
T Consensus 94 ~~~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~----------~~~~ll~~l~-~~l~~~~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 94 NYA--SACVPSLLEKFKEKKPNVVTALREAIDAIYAST----------SLEAQQESIV-ESLSNKNPSVKSETALFIARA 160 (242)
T ss_dssp HHH--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTS----------CHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC----------CHHHHHHHHH-HHHcCCChHHHHHHHHHHHHH
Confidence 100 012234444555666777788888888776532 3566677774 788899999999999999998
Q ss_pred hcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeee
Q 040072 239 LLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKL 282 (354)
Q Consensus 239 Lldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKv 282 (354)
+..-.....+..|+ +.-+..++.+|.|+...++-.|+..+-.
T Consensus 161 l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~ 202 (242)
T 2qk2_A 161 LTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGT 202 (242)
T ss_dssp HTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 85532333455666 3678889999999999888888765543
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=77.57 E-value=45 Score=31.68 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=113.3
Q ss_pred hcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhh---cCCchhhhhHhHHHHHHHhH
Q 040072 78 EDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILG---YEDGDVALTYGAIARECIRH 154 (354)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g---Y~~~dial~~G~mLRecik~ 154 (354)
.+.+..|+..|..=+-+.|..++....++-... +...-+...+.++..|+.. -+++++-..+-..|+.+.++
T Consensus 16 ~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~-----~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred HhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-----ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 445555665555445555666666666665422 1122233344444444432 24677888888889998888
Q ss_pred HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHH
Q 040072 155 QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKL 234 (354)
Q Consensus 155 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKL 234 (354)
+.....+.....+..+.+.+..++-++-..|..++..+...+......+...+ .....- .++.+++--.+..+...
T Consensus 91 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g---~i~~L~-~ll~~~~~~~~~~~~~~ 166 (529)
T 1jdh_A 91 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTDC 166 (529)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT---HHHHHH-HGGGCCCHHHHHHHHHH
T ss_pred chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC---CHHHHH-HHHhcCCHHHHHHHHHH
Confidence 87777787888888899999998888888999999988775443333333332 334443 78888887777777778
Q ss_pred HHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCc
Q 040072 235 LGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNK 270 (354)
Q Consensus 235 LgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk 270 (354)
|+.+-.. |.......+. ..-+..++.+|++.+.
T Consensus 167 L~~la~~--~~~~~~~i~~-~~~i~~L~~ll~~~~~ 199 (529)
T 1jdh_A 167 LQILAYG--NQESKLIILA-SGGPQALVNIMRTYTY 199 (529)
T ss_dssp HHHHHTT--CHHHHHHHHH-TTHHHHHHHHHHHCCC
T ss_pred HHHHHhC--CHHHHHHHHH-CCCHHHHHHHHHhCCh
Confidence 8776642 3232222232 3457777777776643
No 29
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=76.56 E-value=69 Score=32.52 Aligned_cols=183 Identities=9% Similarity=0.115 Sum_probs=98.2
Q ss_pred HHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHh-hhchhHHHHHHhhcCCc--hhhhhHh--HHHHHHHhH---H
Q 040072 84 LIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYL-EANFDIMDTLILGYEDG--DVALTYG--AIARECIRH---Q 155 (354)
Q Consensus 84 Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl-~~~peil~~L~~gY~~~--dial~~G--~mLRecik~---e 155 (354)
|+..|..=+-.. ..+.++++.+.+.. +- ...|+++..|+..-.++ +...--| ..|..+++. +
T Consensus 95 ll~~l~~~~~~~-~~~~~~l~~i~~~~---------~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~ 164 (876)
T 1qgr_A 95 VLHTLGTETYRP-SSASQCVAGIACAE---------IPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE 164 (876)
T ss_dssp HHHHTTTCCSSS-CHHHHHHHHHHHHH---------GGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHhCCCcHHH-HHHHHHHHHHHHhh---------CcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh
Confidence 444443333333 45555566555532 21 23488888888776555 3222111 122222221 1
Q ss_pred HHHHHHhcchh-HHHhhhhccCC--CchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhH
Q 040072 156 SVARYVLESEH-MKKFFSFLQIP--NFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAV 232 (354)
Q Consensus 156 ~la~~iL~~~~-f~~fF~yv~~~--~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSL 232 (354)
.+.. +.+. +..+...+..+ +-++...|+..+..+...-..-....... +.+....- .++.+++.-.|++++
T Consensus 165 ~~~~---~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~--~~il~~l~-~~~~~~~~~vr~~a~ 238 (876)
T 1qgr_A 165 QLQD---KSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER--HFIMQVVC-EATQCPDTRVRVAAL 238 (876)
T ss_dssp HHGG---GHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH--HHHHHHHH-HHTTCSSHHHHHHHH
T ss_pred hHHh---HHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHH-HHcCCCCHHHHHHHH
Confidence 1110 0011 22333455555 67788888888887764211110000000 12444443 567788888899999
Q ss_pred HHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 233 KLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 233 KLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
+.|+.++... ...+..|+. +.-+..++..+.+....++..|+..+.-++.
T Consensus 239 ~~l~~l~~~~--~~~~~~~~~-~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~ 288 (876)
T 1qgr_A 239 QNLVKIMSLY--YQYMETYMG-PALFAITIEAMKSDIDEVALQGIEFWSNVCD 288 (876)
T ss_dssp HHHHHHHHHS--GGGCHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh--HHHHHHHHH-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence 9999999543 344556665 2446677777788888888888876665543
No 30
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=74.90 E-value=76 Score=32.16 Aligned_cols=185 Identities=11% Similarity=0.141 Sum_probs=107.8
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC--CchhhhhHhHHHHHHHhHHHH
Q 040072 80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE--DGDVALTYGAIARECIRHQSV 157 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~--~~dial~~G~mLRecik~e~l 157 (354)
++..|...+..-+.+.|+.+..++..+....... ...|+. ++++..++.+-. ++++...+-..+..+++...-
T Consensus 225 ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~l~--~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 299 (861)
T 2bpt_A 225 LMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTF---MKPYME--QALYALTIATMKSPNDKVASMTVEFWSTICEEEID 299 (861)
T ss_dssp HHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGG---CHHHHH--HTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHh
Confidence 4444555555556777888888887777543211 122332 167776666654 345666666666666655321
Q ss_pred ------------------HHHHhcchhHHHhhhhccC-------CCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHH
Q 040072 158 ------------------ARYVLESEHMKKFFSFLQI-------PNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFF 212 (354)
Q Consensus 158 ------------------a~~iL~~~~f~~fF~yv~~-------~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff 212 (354)
.+-.+ ...+..++..+.. ..+.+...|..++..+-.... ..-...++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~-------~~~~~~l~ 371 (861)
T 2bpt_A 300 IAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG-------NHILEPVL 371 (861)
T ss_dssp HHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG-------GGGHHHHH
T ss_pred hhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc-------HhHHHHHH
Confidence 11111 2223344444432 346666666666666544222 12234556
Q ss_pred HHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeee
Q 040072 213 QEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFK 281 (354)
Q Consensus 213 ~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFK 281 (354)
.... .++.+++.-.|..++..||.+.-.-. ...+..|+. .-+..+...|+|++..++..|...+-
T Consensus 372 ~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~l~--~il~~l~~~l~d~~~~vr~~a~~~l~ 436 (861)
T 2bpt_A 372 EFVE-QNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYVH--QALPSILNLMNDQSLQVKETTAWCIG 436 (861)
T ss_dssp HHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHHH--HHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred HHHH-HHcCCCChhHHHHHHHHHHHHHcCCC-HHHHHHHHH--HHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 6665 78889999999999999999983321 244556664 35667778888988888876655433
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=74.43 E-value=73 Score=31.98 Aligned_cols=180 Identities=12% Similarity=0.102 Sum_probs=115.7
Q ss_pred hhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc---CCchhhhhHhHHHHHHHh
Q 040072 77 KEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY---EDGDVALTYGAIARECIR 153 (354)
Q Consensus 77 ~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---~~~dial~~G~mLRecik 153 (354)
..+.+..|+..|..=+-+.|..++....++-... +...-+...+.++..|+..- +++++-..+-..|+.+.+
T Consensus 12 ~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-----~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 12 ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-----ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-----THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-----hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 4455666666665445556666666666665432 12223344455555555443 356777778888888888
Q ss_pred HHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHH
Q 040072 154 HQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVK 233 (354)
Q Consensus 154 ~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLK 233 (354)
++.....+.....+..+.+.++.++-++-..|..++..+...+......+.... .....- .+|.++|--.+..++.
T Consensus 87 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~~~~~a~~ 162 (644)
T 2z6h_A 87 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG---GLQKMV-ALLNKTNVKFLAITTD 162 (644)
T ss_dssp SHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTT---HHHHHH-HGGGCCCHHHHHHHHH
T ss_pred ChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCC---ChHHHH-HHHCcCCHHHHHHHHH
Confidence 888777788888888899999988888989999999998876544444444333 334443 7888887655666677
Q ss_pred HHHHHhc-ccccHHHHHHHhcChhhHHHHHHHhccCC
Q 040072 234 LLGDILL-DRSNSAVMVKYVSSLDNMRILMNLLRDSN 269 (354)
Q Consensus 234 LLgelLl-dr~N~~vM~~Yis~~~NLkliM~LL~d~s 269 (354)
.|+.|-. +..|... .+ +..-+..++.+|++.+
T Consensus 163 ~L~~La~~~~~~~~~---i~-~~g~v~~Lv~lL~~~~ 195 (644)
T 2z6h_A 163 CLQILAYGNQESKLI---IL-ASGGPQALVNIMRTYT 195 (644)
T ss_dssp HHHHHHTTCHHHHHH---HH-HTTHHHHHHHHHTTCC
T ss_pred HHHHHHhcCcHHHHH---HH-HcCChHHHHHHHHcCC
Confidence 7877775 2333222 22 3355777788887664
No 32
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=72.77 E-value=74 Score=31.12 Aligned_cols=187 Identities=13% Similarity=0.141 Sum_probs=121.5
Q ss_pred cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhh--cCCchhhhhHhHHHHHHH-hHH
Q 040072 79 DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILG--YEDGDVALTYGAIARECI-RHQ 155 (354)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~g--Y~~~dial~~G~mLReci-k~e 155 (354)
..+..|+..+..=+-+.+.+++....++.....+ ..+.+.. ..++..|+.- ..++.+-..+-..|..+. ..+
T Consensus 232 ~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~----~~~~i~~-~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~ 306 (510)
T 3ul1_B 232 QILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE----RIEMVVK-KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTD 306 (510)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----HHHHHHT-TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----hHHHHHh-cccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH
Confidence 3456666666666666666666666666542210 1111211 1222222221 234455555555555543 345
Q ss_pred HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHH
Q 040072 156 SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLL 235 (354)
Q Consensus 156 ~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLL 235 (354)
..+..++....+..+...+..++=+|-..|..++..+...........+..+ .+...- .++.++++-+|+.+...|
T Consensus 307 ~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g---~i~~Lv-~lL~~~~~~v~~~Aa~aL 382 (510)
T 3ul1_B 307 EQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHG---LVPFLV-GVLSKADFKTQKEAAWAI 382 (510)
T ss_dssp HHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTT---HHHHHH-HHHHSSCHHHHHHHHHHH
T ss_pred HHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcC---CHHHHH-HHHcCCCHHHHHHHHHHH
Confidence 6677788777777788888889999999999999998877776666666554 444553 789999999999999999
Q ss_pred HHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceec
Q 040072 236 GDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFES 276 (354)
Q Consensus 236 gelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EA 276 (354)
+.+........ ..|+-+..-++.++.||+++...|+.-+
T Consensus 383 ~Nl~~~~~~~~--~~~L~~~g~i~~L~~LL~~~d~~i~~~~ 421 (510)
T 3ul1_B 383 TNYTSGGTVEQ--IVYLVHCGIIEPLMNLLSAKDTKIIQVI 421 (510)
T ss_dssp HHHHHHCCHHH--HHHHHHTTCHHHHHHGGGCSCHHHHHHH
T ss_pred HHHHccCCHHH--HHHHHHCCCHHHHHHHhcCCCHHHHHHH
Confidence 99987544333 3466677888999999988877765544
No 33
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=71.14 E-value=26 Score=33.51 Aligned_cols=163 Identities=13% Similarity=0.155 Sum_probs=104.3
Q ss_pred HHhhcHHHHHHHhC-CCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHh----hcCCc--hhhhhHhHH
Q 040072 75 FFKEDTLRLLIASL-PKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLIL----GYEDG--DVALTYGAI 147 (354)
Q Consensus 75 i~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~----gY~~~--dial~~G~m 147 (354)
+...+.+..|+..| ..=+-+.++.++....+|-....+.+ . -+......+..|+. +.+.. ++.-.+...
T Consensus 166 i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk---~-~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~a 241 (354)
T 3nmw_A 166 LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK---A-DICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241 (354)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH---H-HHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh---H-HHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHH
Confidence 44456677777653 32344555555444444332111111 1 12212233333322 22221 355666777
Q ss_pred HHHHHh----HHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCC
Q 040072 148 ARECIR----HQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESS 223 (354)
Q Consensus 148 LRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~ 223 (354)
||-+.. .+.....+.+...+-.+.+.+..+++++-..|-.++..+-.............+ .+...- .||.++
T Consensus 242 L~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~i~~Lv-~LL~s~ 317 (354)
T 3nmw_A 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSMLK-NLIHSK 317 (354)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTT---HHHHHH-TTTTCS
T ss_pred HHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCC---CHHHHH-HHHhCC
Confidence 887664 566667788888889999999999999999999999998766666666666554 334443 799999
Q ss_pred CcchhhhhHHHHHHHhcccccH
Q 040072 224 SYITKRHAVKLLGDILLDRSNS 245 (354)
Q Consensus 224 NYVtkRQSLKLLgelLldr~N~ 245 (354)
+--+++.+..-|..|..++.+.
T Consensus 318 ~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 318 HKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp SHHHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999887764
No 34
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=70.95 E-value=33 Score=34.91 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=110.9
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHhHHHH
Q 040072 80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIRHQSV 157 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~l 157 (354)
++..+...+..-+.+.|+.+..++..+....... ...|+. +.++..++.+. .++++...+-..+..+++++.-
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~--~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~ 292 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY---METYMG--PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 292 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGG---CHHHHT--TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHH---HHHHHH--HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHh
Confidence 4555666666667777888888888887644221 123332 36777777654 3456666666666666655321
Q ss_pred ----------------------HHHHhcchhHHHhhhhcc-------CCCchhhhhHHHHHHHHHhcChhHHHHHHHhhH
Q 040072 158 ----------------------ARYVLESEHMKKFFSFLQ-------IPNFDIASDAQATFKELLTRHKSTVAEFLSKNY 208 (354)
Q Consensus 158 ----------------------a~~iL~~~~f~~fF~yv~-------~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Ny 208 (354)
.+-.+ .+.+-.++..+. ..++.+-..|...+..+-..-.+ .-.
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-------~~~ 364 (876)
T 1qgr_A 293 LAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIV 364 (876)
T ss_dssp HHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-------GGH
T ss_pred HhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-------hhH
Confidence 00000 011112233322 23444444444444444322111 123
Q ss_pred HHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 209 DWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 209 d~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
+.++.... ..+.+++.-.|..++..||.+...-. ...+..|+ +.-+..+..+|.|++..++..|...+.-|+.
T Consensus 365 ~~~l~~l~-~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~ 437 (876)
T 1qgr_A 365 PHVLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (876)
T ss_dssp HHHHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 45565564 67889999999999999999985332 13344555 4567888899999999999888887776654
No 35
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=69.43 E-value=32 Score=37.09 Aligned_cols=197 Identities=13% Similarity=0.136 Sum_probs=127.8
Q ss_pred HHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHH-hhhchhHHHHHHhhcCCc-hhh--hhHhHH
Q 040072 72 TREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTY-LEANFDIMDTLILGYEDG-DVA--LTYGAI 147 (354)
Q Consensus 72 a~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Y-l~~~peil~~L~~gY~~~-dia--l~~G~m 147 (354)
...+.+.+.+..|+..|..=+.+.|+.++...+++..... |...+ ...-.+++.-|+.--... +.- ..+=.-
T Consensus 529 r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~----p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~A 604 (810)
T 3now_A 529 RGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITIN----PEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMA 604 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC----HHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCC----hhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 3456677788888888877677888888887777765321 11100 000012333333322211 111 112223
Q ss_pred HHHHHhH-HHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcc
Q 040072 148 ARECIRH-QSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYI 226 (354)
Q Consensus 148 LRecik~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYV 226 (354)
|+-+..+ +.....+.....+..+.+++..++-.|-.-|..++.-+.+ ++.....|.. +.. -....- .|+.+++.-
T Consensus 605 L~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~-~~~~~~~~v~-~~g-~l~~Lv-~LL~s~d~~ 680 (810)
T 3now_A 605 LTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM-SEDVIKMFEG-NND-RVKFLA-LLCEDEDEE 680 (810)
T ss_dssp HHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT-SHHHHHHHHS-SSS-HHHHHH-HGGGCSSHH
T ss_pred HHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-ChHHHHHHHh-ccC-cHHHHH-HHhcCCCHH
Confidence 4444444 5666667777777788888888888999999999988766 6666667763 222 234443 789999999
Q ss_pred hhhhhHHHHHHHhc-ccccHHHHHHHhcC-hhhHHHHHHHhccCCcCcceecceee
Q 040072 227 TKRHAVKLLGDILL-DRSNSAVMVKYVSS-LDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 227 tkRQSLKLLgelLl-dr~N~~vM~~Yis~-~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
+|+.+.-.|+-|-. ++.+ .++|-+ ..-+..+..||++.+..+|-+|--..
T Consensus 681 vq~~Aa~ALanLt~~s~~~----~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL 732 (810)
T 3now_A 681 TATACAGALAIITSVSVKC----CEKILAIASWLDILHTLIANPSPAVQHRGIVII 732 (810)
T ss_dssp HHHHHHHHHHHHHHHCHHH----HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHH----HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHH
Confidence 99999999999986 3332 234444 78889999999999999999987544
No 36
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=65.60 E-value=51 Score=32.77 Aligned_cols=162 Identities=13% Similarity=0.152 Sum_probs=102.8
Q ss_pred HHHhhcHHHHHHHhC-CCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHh----hcCCc--hhhhhHhH
Q 040072 74 EFFKEDTLRLLIASL-PKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLIL----GYEDG--DVALTYGA 146 (354)
Q Consensus 74 ei~~~dll~~Li~~l-~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~----gY~~~--dial~~G~ 146 (354)
.+...+.+..|+..| ..=+-+.++.+.....+|-....+.+. -+......+..|+. +.+.+ ++.-.+..
T Consensus 281 ~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~----~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~ 356 (458)
T 3nmz_A 281 TLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA----DICAVDGALAFLVGTLTYRSQTNTLAIIESGGG 356 (458)
T ss_dssp HHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHH----HHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHH----HHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHH
Confidence 344556677777763 333444555444433333221111111 12212333333322 22222 35666677
Q ss_pred HHHHHHh----HHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccC
Q 040072 147 IARECIR----HQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLES 222 (354)
Q Consensus 147 mLRecik----~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s 222 (354)
.||-+.. .+.....+.+...+-.+.+.+..+++++-..|-.++..+-..++.......... .+.-.- .||.+
T Consensus 357 aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G---~I~~Lv-~LL~s 432 (458)
T 3nmz_A 357 ILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG---AVSMLK-NLIHS 432 (458)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHT---HHHHHH-TTTTC
T ss_pred HHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCC---CHHHHH-HHHhC
Confidence 7887664 566667778888888999999999999999999999998767776666666554 334443 79999
Q ss_pred CCcchhhhhHHHHHHHhcccc
Q 040072 223 SSYITKRHAVKLLGDILLDRS 243 (354)
Q Consensus 223 ~NYVtkRQSLKLLgelLldr~ 243 (354)
++--+++.+.--|..|+.++.
T Consensus 433 ~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 433 KHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp SSHHHHHHHHHHHHHHHTCCS
T ss_pred CCHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999987653
No 37
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=65.23 E-value=1.4e+02 Score=31.46 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=94.3
Q ss_pred HHHHHHhhhccCCCCC-------CChHHHHHHHHHHHhh-cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchh
Q 040072 47 LLLEMRTVLFGSDQSE-------PNADACEQLTREFFKE-DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIAC 118 (354)
Q Consensus 47 ~L~~mK~il~G~~e~e-------p~~e~~~qLa~ei~~~-dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v 118 (354)
.|.-+-.++.++++.+ ...+...+++.++.+. +-+..|+..|..=+|..|-.+.++...++..+... .=
T Consensus 82 ~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~---~Q 158 (651)
T 3grl_A 82 ALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQ---VQ 158 (651)
T ss_dssp HHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHH---HH
T ss_pred HHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHH---HH
Confidence 3444445566554321 1123446777777554 78999999999999999999999999999744221 34
Q ss_pred HHhhhchhHHHHHHhhcCCch-hhhhHhH-HHHHHHh-HHHHHHHHhcchhHHHhhhhccCCCc----hhhhhHHHHHHH
Q 040072 119 TYLEANFDIMDTLILGYEDGD-VALTYGA-IARECIR-HQSVARYVLESEHMKKFFSFLQIPNF----DIASDAQATFKE 191 (354)
Q Consensus 119 ~Yl~~~peil~~L~~gY~~~d-ial~~G~-mLRecik-~e~la~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfke 191 (354)
+++...|.-+..|+.--+++. +.=+-+. +|-+..+ +..+-+.+=.-.-|..+|+-++...- .|..|++..+..
T Consensus 159 ~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~n 238 (651)
T 3grl_A 159 QIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQN 238 (651)
T ss_dssp HHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred HHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHH
Confidence 567778888888888766542 1111111 1111111 22233333332357777877765554 778899998888
Q ss_pred HHhcChhHHHHHHHh
Q 040072 192 LLTRHKSTVAEFLSK 206 (354)
Q Consensus 192 llt~Hk~lvaefl~~ 206 (354)
||..+.+-=.-|.+.
T Consensus 239 LLr~N~sNQ~~FrEt 253 (651)
T 3grl_A 239 LLKNNNSNQNFFKEG 253 (651)
T ss_dssp HHTTCHHHHHHHHHT
T ss_pred HHhcCHHHHHHHHHc
Confidence 888775433333333
No 38
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=64.93 E-value=54 Score=30.27 Aligned_cols=189 Identities=12% Similarity=0.084 Sum_probs=105.4
Q ss_pred HHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhc--CCchhhhhHhHHHHHHHhHHHHH
Q 040072 81 LRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGY--EDGDVALTYGAIARECIRHQSVA 158 (354)
Q Consensus 81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY--~~~dial~~G~mLRecik~e~la 158 (354)
+..|...+..-+.+.|+.+..++..+....... + ..|+.. +++..++.+- .++++...+-..+..+.+.+.-.
T Consensus 219 ~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~-~--~~~~~~--~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~ 293 (462)
T 1ibr_B 219 MQVVCEATQCPDTRVRVAALQNLVKIMSLYYQY-M--ETYMGP--ALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDL 293 (462)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGG-C--TTTTTT--THHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-H--HHHHHH--HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 444555556667778888888888887644211 0 122221 5666655443 34555555555555555443100
Q ss_pred HHHhc---------------------chhHHHhhhhccC-------CCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHH
Q 040072 159 RYVLE---------------------SEHMKKFFSFLQI-------PNFDIASDAQATFKELLTRHKSTVAEFLSKNYDW 210 (354)
Q Consensus 159 ~~iL~---------------------~~~f~~fF~yv~~-------~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~ 210 (354)
...-. ...+-.+++.+.. .+..+...|..++..+-..-.+ .-...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-------~~~~~ 366 (462)
T 1ibr_B 294 AIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-------DIVPH 366 (462)
T ss_dssp HHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-------THHHH
T ss_pred HHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-------HHHHH
Confidence 00000 0111122233321 2334444555555554332221 11234
Q ss_pred HHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeee
Q 040072 211 FFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVA 285 (354)
Q Consensus 211 Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA 285 (354)
++.... .++.++++-.|.-++..||.+.-.-. -..+..|+ +.-+..+..+|+|+...++..|...+.-|..
T Consensus 367 ~~~~l~-~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 367 VLPFIK-EHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICE 437 (462)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHHHTSSSSC-TTTTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCCChHHHHHHHHHHHHHhcCCc-HHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 555554 78889999999999999999985322 12223344 5678889999999999999999887765553
No 39
>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19
Probab=62.78 E-value=75 Score=30.62 Aligned_cols=92 Identities=12% Similarity=0.084 Sum_probs=68.7
Q ss_pred hhHHHHHHhh---------cCCchhhhhHhHHHHHHHhHHHHHHHHhcchhHHHhhhh----ccCCCchhhhhHHHHHHH
Q 040072 125 FDIMDTLILG---------YEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSF----LQIPNFDIASDAQATFKE 191 (354)
Q Consensus 125 peil~~L~~g---------Y~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~y----v~~~~FdiasDAf~Tfke 191 (354)
|.|++.+..+ .+.||.-...=.+||.|..|-.-+=.-|..+.|..+.+- ++-+.-+||--++.++.+
T Consensus 114 p~Il~~VFe~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~fklvidsiiWa~kH~~r~V~e~gL~il~~ 193 (321)
T 1w9c_A 114 PQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFT 193 (321)
T ss_dssp HHHHHHHHHHHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHH
Confidence 6676666433 478999999999999999884333333666677777775 468999999999999999
Q ss_pred HHhc---ChhHHHHHHHhhHHHHHHHHH
Q 040072 192 LLTR---HKSTVAEFLSKNYDWFFQEYN 216 (354)
Q Consensus 192 llt~---Hk~lvaefl~~Nyd~Ff~~yn 216 (354)
++.+ +...+.+|..+.|-...++.-
T Consensus 194 ll~n~~~~~~~~~~Fy~~fy~~il~~if 221 (321)
T 1w9c_A 194 LLQNVAQEEAAAQSFYQTYFCDILQHIF 221 (321)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 9984 455666887777777666654
No 40
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=62.55 E-value=1.3e+02 Score=30.10 Aligned_cols=179 Identities=13% Similarity=0.074 Sum_probs=116.0
Q ss_pred HHhhcHHHHHHHhCCCCC-CCcchhHHHHHHHHhhcccCCCcchhHHhhhc---hhHHHHHHhhc---------------
Q 040072 75 FFKEDTLRLLIASLPKLA-MGPRRDATHVVANLQRQRVDTKLIACTYLEAN---FDIMDTLILGY--------------- 135 (354)
Q Consensus 75 i~~~dll~~Li~~l~~L~-fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~---peil~~L~~gY--------------- 135 (354)
+...+.+..|+..|..=. .+.|+.++.+..++..... ....+... |.++..|-.+.
T Consensus 348 v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~-----~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~ 422 (644)
T 2z6h_A 348 VRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422 (644)
T ss_dssp HHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-----GHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHH-----HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence 455677888888877543 4668888888888765221 11222221 33333333321
Q ss_pred -----CCchhhhhHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHH
Q 040072 136 -----EDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDW 210 (354)
Q Consensus 136 -----~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~ 210 (354)
...++...+-..|+.+.+++.....+.....+..+.+++..++-+|..-|...+..+. .++.....+....
T Consensus 423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~-~~~~~~~~i~~~g--- 498 (644)
T 2z6h_A 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG--- 498 (644)
T ss_dssp -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT---
T ss_pred hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHH-cCHHHHHHHHHcC---
Confidence 2234445566677888888877667767778888889999999999888888888765 4554443333322
Q ss_pred HHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCC
Q 040072 211 FFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSN 269 (354)
Q Consensus 211 Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~s 269 (354)
-....- .|+.++|--++..+...|+.+..++. .....++ -+.++..++++..
T Consensus 499 ~l~~L~-~ll~~~~~~vr~~A~~aL~~l~~~~~-~~~~~~~-----~~~il~~~~~~~~ 550 (644)
T 2z6h_A 499 ATAPLT-ELLHSRNEGVATYAAAVLFRMSEDKP-QDYKKRL-----SVELTSSLFRTEP 550 (644)
T ss_dssp CHHHHH-HHTTCSCHHHHHHHHHHHHHHTTTSC-HHHHHHH-----HHHHHHHHSCCSC
T ss_pred ChhHHH-HHHcCCCHHHHHHHHHHHHHHhccCc-Hhhhccc-----chHHHHHHHhCCC
Confidence 133443 78999999999999999999988774 2333332 2777888886653
No 41
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=62.00 E-value=20 Score=38.94 Aligned_cols=148 Identities=11% Similarity=0.097 Sum_probs=88.0
Q ss_pred HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCch--hhhhHhHHHHHHHhHHHH
Q 040072 80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGD--VALTYGAIARECIRHQSV 157 (354)
Q Consensus 80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~d--ial~~G~mLRecik~e~l 157 (354)
++..|+..+..=+.+.|+-+......+...- +. . ..+.|+..|+.+..+++ +-..++..|..++.+-.-
T Consensus 49 il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~-----~~-~---~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~ 119 (1230)
T 1u6g_C 49 VVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-----KE-Y---QVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPP 119 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHTTS-----CH-H---HHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-----CH-H---HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCC
Confidence 4455666666556677877777777766421 11 2 23678888888865433 333344444444322100
Q ss_pred H------HHHhcchhHHHhhhhcc-CCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhh
Q 040072 158 A------RYVLESEHMKKFFSFLQ-IPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRH 230 (354)
Q Consensus 158 a------~~iL~~~~f~~fF~yv~-~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQ 230 (354)
. ..-.....+-.+++.++ .++.++...|+.++.+++....+.+.. .++.+...+- .++.+++-.+|++
T Consensus 120 ~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~----~~~~ll~~l~-~~L~~~~~~vR~~ 194 (1230)
T 1u6g_C 120 ASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN----FHPSILTCLL-PQLTSPRLAVRKR 194 (1230)
T ss_dssp ----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT----THHHHHHHHG-GGGGCSSHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH----HHHHHHHHHH-HHHcCCcHHHHHH
Confidence 0 00001123345566666 588899999999999998654332222 3355666664 6778888888889
Q ss_pred hHHHHHHHhcc
Q 040072 231 AVKLLGDILLD 241 (354)
Q Consensus 231 SLKLLgelLld 241 (354)
+++.||.+...
T Consensus 195 a~~al~~l~~~ 205 (1230)
T 1u6g_C 195 TIIALGHLVMS 205 (1230)
T ss_dssp HHHHHHHHTTT
T ss_pred HHHHHHHHHHh
Confidence 99888888754
No 42
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=61.59 E-value=15 Score=35.64 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=42.4
Q ss_pred cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhh-chhHHHHHHhh
Q 040072 79 DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEA-NFDIMDTLILG 134 (354)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~peil~~L~~g 134 (354)
++|..|+ +...+|.+.|..++.|.+.+|| +.+|+++++.+ +|..+..++..
T Consensus 71 ~lL~nL~-~~~~~~~~~rE~aarII~ssLR----NNP~Al~~V~~~~p~fv~~lf~~ 122 (315)
T 3qml_C 71 ALLANLS-LNENLPLTLRELSTRVITSCLR----NNPPVVEFINESFPNFKSKIMAA 122 (315)
T ss_dssp HHHHHHH-HCTTSCHHHHHHHHHHHHHHHT----TCHHHHHHHHHHCTTHHHHHHHH
T ss_pred HHHHHHH-hhccCChhHHHHHHHHHHHHHc----cCHHHHHHHHHhChhHHHHHHHH
Confidence 6788888 5556898888899999999999 44788999877 79999999854
No 43
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=61.11 E-value=1.6e+02 Score=30.69 Aligned_cols=171 Identities=10% Similarity=0.015 Sum_probs=94.5
Q ss_pred hhHHHHHHhhcCC---chhhhhHhHHHHHHHhHHH---HHHHHhcchhHHHhhhhcc-C--CCchhhhhHHHHHHHHHhc
Q 040072 125 FDIMDTLILGYED---GDVALTYGAIARECIRHQS---VARYVLESEHMKKFFSFLQ-I--PNFDIASDAQATFKELLTR 195 (354)
Q Consensus 125 peil~~L~~gY~~---~dial~~G~mLRecik~e~---la~~iL~~~~f~~fF~yv~-~--~~FdiasDAf~Tfkellt~ 195 (354)
|.++..++.+|.. +..--..+.+++++-..+. ...-++. ..+...+.-++ . ..=|+..++|.-+..++..
T Consensus 725 ~~~~~~l~~~~~~~~~~~~l~l~~~li~~f~~~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~ 803 (963)
T 2x19_B 725 PQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR 803 (963)
T ss_dssp HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHHhCCCcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHh
Confidence 6777788888865 2333344555554322221 1111111 11122221111 1 1347888889999999888
Q ss_pred ChhHHHHHHHhh-HHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcC--hhhHHHHHHHhccCCcCc
Q 040072 196 HKSTVAEFLSKN-YDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSS--LDNMRILMNLLRDSNKNI 272 (354)
Q Consensus 196 Hk~lvaefl~~N-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~--~~NLkliM~LL~d~sk~I 272 (354)
++..+-. ... ++.++...- ..+.+.+.-+.+.+++.|.+++..-........++.. +.-+..+|..+.+....-
T Consensus 804 ~~~~~~~--~~~~~~~i~~~~~-~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~ 880 (963)
T 2x19_B 804 KPDLFLC--ERLDVKAVFQCAV-LALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRS 880 (963)
T ss_dssp CGGGGGC--TTSCHHHHHHHHH-HHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGG
T ss_pred CcHHHcC--CcccHHHHHHHHH-HHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChh
Confidence 8765521 222 677777774 6788999999999999999999764333444444442 122344555566655555
Q ss_pred ceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcC
Q 040072 273 QFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDF 311 (354)
Q Consensus 273 q~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f 311 (354)
.++..- .-+..+..+|.+.+..|+.+.
T Consensus 881 ~~~~~~------------~il~~l~~~~~~~~~~~l~~~ 907 (963)
T 2x19_B 881 LMDCFA------------DILFALNKHCFSLLSMWIKEA 907 (963)
T ss_dssp GHHHHH------------HHHHHHHHHSHHHHHHHHHHH
T ss_pred HHHHHH------------HHHHHHHHHChHHHHHHHHHH
Confidence 554221 011234445666677777643
No 44
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=60.14 E-value=80 Score=33.00 Aligned_cols=179 Identities=13% Similarity=0.078 Sum_probs=110.0
Q ss_pred HHHhhcHHHHHHHhCCCCCC-CcchhHHHHHHHHhhcccCCCcchhHHhhh-c--hhHHHHHHhhc--------------
Q 040072 74 EFFKEDTLRLLIASLPKLAM-GPRRDATHVVANLQRQRVDTKLIACTYLEA-N--FDIMDTLILGY-------------- 135 (354)
Q Consensus 74 ei~~~dll~~Li~~l~~L~f-E~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~--peil~~L~~gY-------------- 135 (354)
.+...+.+..|+..|..=+- +.|+.++.+..++.+... ....+.. . |.++..|-.+.
T Consensus 483 ~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~-----~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq 557 (780)
T 2z6g_A 483 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-----NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557 (780)
T ss_dssp HHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH-----HHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccc
Confidence 34455667778877765553 667888888888765221 1122222 1 33344443321
Q ss_pred ------CCchhhhhHhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHH
Q 040072 136 ------EDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYD 209 (354)
Q Consensus 136 ------~~~dial~~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd 209 (354)
...++...+...|+.|.+++.....+.....+..+.+.+..++-+|..-|...+..+. .++.....+....
T Consensus 558 ~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~-~~~~~~~~i~~~g-- 634 (780)
T 2z6g_A 558 QFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEG-- 634 (780)
T ss_dssp CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH-TSHHHHHHHHHTT--
T ss_pred hhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHCC--
Confidence 1133444555667777777776666767778888889999898888888888888775 3444443333322
Q ss_pred HHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccC
Q 040072 210 WFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDS 268 (354)
Q Consensus 210 ~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~ 268 (354)
....+- .|+.++|--.|+.++..|+.+..++.. .+..+. ..+++-.++++.
T Consensus 635 -~i~~L~-~Ll~~~~~~Vr~~A~~aL~~l~~~~~~-~~~~~l-----~~~ll~~l~~~~ 685 (780)
T 2z6g_A 635 -ATAPLT-ELLHSRNEGVATYAAAVLFRMSEDKPQ-DYKKRL-----SVELTSSLFRTE 685 (780)
T ss_dssp -CHHHHH-HGGGCSCHHHHHHHHHHHHHHHTTSCT-THHHHH-----HHHHHHHC----
T ss_pred -CHHHHH-HHHcCCCHHHHHHHHHHHHHHHcCChH-hhhccc-----cHHHHHHHHhCC
Confidence 223343 799999999999999999999988872 222221 455666666544
No 45
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=58.60 E-value=1e+02 Score=33.01 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=58.8
Q ss_pred CCchhhhhHhHHHHHHHhHHHHHHHHhc-ch-hHHHhhh----hccCCCchhhhhHHHHHHHHHhcCh-----hHHHHHH
Q 040072 136 EDGDVALTYGAIARECIRHQSVARYVLE-SE-HMKKFFS----FLQIPNFDIASDAQATFKELLTRHK-----STVAEFL 204 (354)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~-~~-~f~~fF~----yv~~~~FdiasDAf~Tfkellt~Hk-----~lvaefl 204 (354)
+.||+.-.+=.+|..++++-. ..++. ++ .+..+++ -+..+.-+++.-|...+.++++..+ ..+..|+
T Consensus 816 ~~pd~~~~~f~ll~~i~~~~~--~~l~~~~~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~ 893 (1049)
T 3m1i_C 816 EYPEHRVEFYKLLKVINEKSF--AAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFH 893 (1049)
T ss_dssp SSHHHHHHHHHHHHHHHHHCT--HHHHHSCHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHhCH--HHHHcCCHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 467777766555555554321 22332 33 2444443 2468899999999999999998644 3566777
Q ss_pred HhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072 205 SKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239 (354)
Q Consensus 205 ~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL 239 (354)
.+.|-.+....-..|..+. -|-+++...++|
T Consensus 894 ~~~~~~l~~~~~~~l~~~~----h~s~~~~~~~~l 924 (1049)
T 3m1i_C 894 KNYFFIFVSETFFVLTDSD----HKSGFSKQALLL 924 (1049)
T ss_dssp HHHHHHHHHHHHHHHHSTT----CGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcch----HhhhHHHHHHHH
Confidence 7666666655433444443 566666666665
No 46
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=55.72 E-value=83 Score=30.69 Aligned_cols=138 Identities=15% Similarity=0.223 Sum_probs=99.1
Q ss_pred HHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCch-------hhhh
Q 040072 71 LTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGD-------VALT 143 (354)
Q Consensus 71 La~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~d-------ial~ 143 (354)
||.-+..++.+..+...+..=.||.--|+-..|.-++-+. +..+.+||..|.|.+.....+-=..+ +-=.
T Consensus 156 la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~H---k~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 156 LAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRH---KLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSS---HHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhcc---HHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 3333444455556777777888998889999998888643 24568999999887655544332222 2234
Q ss_pred HhHHHHHHHhHHHHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhc-C-hhHHHHHHHhhHHHH
Q 040072 144 YGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTR-H-KSTVAEFLSKNYDWF 211 (354)
Q Consensus 144 ~G~mLRecik~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~-H-k~lvaefl~~Nyd~F 211 (354)
.|.||-+=.-+..+.+||-..+.+.-+...+..++=-|.-+||..||--..+ | ++-|...|..|=++.
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kL 302 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKL 302 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHH
Confidence 5777777667788888888888888888888889999999999999965542 2 356778998887653
No 47
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=52.67 E-value=48 Score=31.75 Aligned_cols=140 Identities=11% Similarity=0.161 Sum_probs=83.7
Q ss_pred hhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHH
Q 040072 170 FFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMV 249 (354)
Q Consensus 170 fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~ 249 (354)
++.+++.++-+|-..|..++..+...... ++. ++.++.... .++.++||-+|..++..+|.+...=.. .
T Consensus 446 l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~---~~~llp~l~-~~~~~~~~~~R~~a~~~l~~l~~~~~~-~--- 514 (588)
T 1b3u_A 446 CMAWLVDHVYAIREAATSNLKKLVEKFGK---EWA---HATIIPKVL-AMSGDPNYLHRMTTLFCINVLSEVCGQ-D--- 514 (588)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHH---HHHTHHHHH-HTTTCSCHHHHHHHHHHHHHHHHHHHH-H---
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhH---HHHHHHHHH-HHhhCCCHHHHHHHHHHHHHHHHhcCH-H---
Confidence 33455666677777777777776654322 221 345555564 678899999999999999998632000 0
Q ss_pred HHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCCcccccHHHHHHHHH
Q 040072 250 KYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIR 329 (354)
Q Consensus 250 ~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~DeqF~dEK~~lI~ 329 (354)
.|. +.-+..++.+|+|+..+++..|...+..++..=. +. .+ .+.++..|.....|+ | .+-|.....
T Consensus 515 ~~~--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~--~~---~~---~~~~~p~l~~l~~d~-d---~~vr~~a~~ 580 (588)
T 1b3u_A 515 ITT--KHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILD--NS---TL---QSEVKPILEKLTQDQ-D---VDVKYFAQE 580 (588)
T ss_dssp HHH--HHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSC--HH---HH---HHHHHHHHHHHTTCS-S---HHHHHHHHH
T ss_pred HHH--HHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhc--hh---hh---HHHHHHHHHHHcCCC-c---hhHHHHHHH
Confidence 121 3556788889999999999888877765543211 11 11 134555555544443 2 245555555
Q ss_pred HHhcC
Q 040072 330 EIATL 334 (354)
Q Consensus 330 ~I~~L 334 (354)
.+..+
T Consensus 581 al~~l 585 (588)
T 1b3u_A 581 ALTVL 585 (588)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 55554
No 48
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=50.83 E-value=60 Score=27.04 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=37.1
Q ss_pred hhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeee
Q 040072 218 QLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLF 283 (354)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvF 283 (354)
.++.+++.-+|+.++..||.+ .+++-+..+..+|.|++..++..|...+.-+
T Consensus 119 ~~l~d~~~~vr~~a~~aL~~~--------------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~ 170 (211)
T 3ltm_A 119 KALKDEDWFVRIAAAFALGEI--------------GDERAVEPLIKALKDEDGWVRQSAADALGEI 170 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH--------------CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 567777777777777777765 3456777788888888888877776555443
No 49
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=50.05 E-value=2.1e+02 Score=28.76 Aligned_cols=42 Identities=12% Similarity=0.122 Sum_probs=27.7
Q ss_pred hccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHH
Q 040072 173 FLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEY 215 (354)
Q Consensus 173 yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~y 215 (354)
.+..++-.|.+.|...+.++...+++. .+.+....+.++...
T Consensus 187 lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L 228 (618)
T 1w63_A 187 LLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRIL 228 (618)
T ss_dssp STTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHH
T ss_pred HhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHH
Confidence 344678889999999999988766554 333344455555444
No 50
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=49.99 E-value=1.6e+02 Score=28.41 Aligned_cols=136 Identities=13% Similarity=0.124 Sum_probs=74.7
Q ss_pred CCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHh
Q 040072 8 KPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIAS 87 (354)
Q Consensus 8 ~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (354)
+.++|.++|+.+++.. .+ +.+.+.|..++..|-.. | ....++|...+ +..|+..
T Consensus 64 ~~~sP~~yi~~L~~~~---------~~-------~kl~~~L~sL~v~Lrt~----~-----~sWV~~F~~~G-l~~Ll~i 117 (383)
T 3eg5_B 64 SSRSAMMYIQELRSGL---------RD-------MHLLSCLESLRVSLTSH----P-----VSWVQTFGAEG-LASLLDI 117 (383)
T ss_dssp -CCCHHHHHHHHTTTC---------CH-------HHHHHHHHHHHHHHHHS----C-----HHHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHhcc---------cc-------hhHHHHHHHHHHHHhhC----c-----cHHHHHHHHcc-HHHHHHH
Confidence 3678999998886421 11 24557788888877432 2 23556665443 3333333
Q ss_pred CCCC---CCC--------cchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHH
Q 040072 88 LPKL---AMG--------PRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQS 156 (354)
Q Consensus 88 l~~L---~fE--------~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~ 156 (354)
|..+ ... -.-.+...+..++..+ ...+++..||+.+.+|..+-..+.... |.. --|-
T Consensus 118 L~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~-----~G~~~vl~~~~~i~~l~~~L~s~~~~~------~~~-aleL 185 (383)
T 3eg5_B 118 LKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK-----FGIKTMLETEEGILLLVRAMDPAVPNM------MID-AAKL 185 (383)
T ss_dssp HHHHHTCC-------CHHHHHHHHHHHHHHTSSH-----HHHHHHHTCSSHHHHHHHTCCTTSHHH------HHH-HHHH
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHhcch-----hhHHHHHcChHHHHHHHHHhCCCchHH------HHH-HHHH
Confidence 3322 111 1112333444444443 358899999999999999876555421 111 1144
Q ss_pred HHHHHhcchhHHHhhhhccCCC-chhhhhHHHHHHH
Q 040072 157 VARYVLESEHMKKFFSFLQIPN-FDIASDAQATFKE 191 (354)
Q Consensus 157 la~~iL~~~~f~~fF~yv~~~~-FdiasDAf~Tfke 191 (354)
|+...++++ ..+ ++..-+|+..+++
T Consensus 186 L~~lc~~~~----------~~gG~~~VL~Al~~~~~ 211 (383)
T 3eg5_B 186 LSALCILPQ----------PEDMNERVLEAMTERAE 211 (383)
T ss_dssp HHHHHTCCS----------STTHHHHHHHHHHHHHH
T ss_pred HHHHHhCcC----------cCCcHHHHHHHHHHHHH
Confidence 444444431 123 7777888888876
No 51
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=49.13 E-value=57 Score=32.71 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=63.7
Q ss_pred hccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccc--------
Q 040072 173 FLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSN-------- 244 (354)
Q Consensus 173 yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N-------- 244 (354)
.+..++-.|-.-|...+-.+....+.++.+ ..++.... .||.++|...++.++..|+++--+...
T Consensus 129 ~L~d~~~~VRk~A~~al~~i~~~~p~~~~~------~~~~~~l~-~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~ 201 (591)
T 2vgl_B 129 CLKDEDPYVRKTAAVCVAKLHDINAQMVED------QGFLDSLR-DLIADSNPMVVANAVAALSEISESHPNSNLLDLNP 201 (591)
T ss_dssp HSSCSCHHHHHHHHHHHHHHHHSSCCCHHH------HHHHHHHH-HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhhChhhccc------ccHHHHHH-HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccH
Confidence 334555556556666666555555554421 34666774 788889999999999999998765431
Q ss_pred --HHHHHHHhcC------------------------hhhHHHHHHHhccCCcCcceecceeeeee
Q 040072 245 --SAVMVKYVSS------------------------LDNMRILMNLLRDSNKNIQFESFHVFKLF 283 (354)
Q Consensus 245 --~~vM~~Yis~------------------------~~NLkliM~LL~d~sk~Iq~EAFhvFKvF 283 (354)
+.-+.+-+.+ ..-+..+..+|++.+..|.+||-..+--+
T Consensus 202 ~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l 266 (591)
T 2vgl_B 202 QNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKF 266 (591)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 1111111111 12344455568888899999998765443
No 52
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=49.11 E-value=59 Score=28.08 Aligned_cols=149 Identities=11% Similarity=0.107 Sum_probs=99.0
Q ss_pred CCCCCcchhHHHHHHHHhhcccCCCcchhHHhhh-chhHHHHHHhhcCCch--hhhhHhHHHHHHHhHHHHHHHHhcchh
Q 040072 90 KLAMGPRRDATHVVANLQRQRVDTKLIACTYLEA-NFDIMDTLILGYEDGD--VALTYGAIARECIRHQSVARYVLESEH 166 (354)
Q Consensus 90 ~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~peil~~L~~gY~~~d--ial~~G~mLRecik~e~la~~iL~~~~ 166 (354)
.-+...|..+...+..+.+.- +. .+.. .+.++..|+....++. +--.+..-|+.|+..-.+ ...
T Consensus 68 d~~~~V~~~a~~~l~~la~~l-~~------~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~l 134 (242)
T 2qk2_A 68 DSNVVLVAMAGKCLALLAKGL-AK------RFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQ 134 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHHHH-GG------GGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-hh------hHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHH
Confidence 344556777777777776421 21 1222 3778888888887653 445666667666654322 123
Q ss_pred HHHhhhhccCCCchhhhhHHHHHHHHHhcCh-h-HHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhccccc
Q 040072 167 MKKFFSFLQIPNFDIASDAQATFKELLTRHK-S-TVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSN 244 (354)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk-~-lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N 244 (354)
+..+..+++..+-.+-..+...+..++.+|. . ....+ +..+....- .++..+++-.|..+...||.+..-=.
T Consensus 135 l~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~----l~~l~p~l~-~~l~D~~~~VR~~A~~~l~~l~~~vg- 208 (242)
T 2qk2_A 135 QESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKL----LKLLTTSLV-KTLNEPDPTVRDSSAEALGTLIKLMG- 208 (242)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHH----HHHHHHHHH-HHHTSSCHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHH----HHHHHHHHH-HHhcCCChHHHHHHHHHHHHHHHHcC-
Confidence 4456677888889999999999999998874 2 23333 455666664 78999999999999999999874333
Q ss_pred HHHHHHHhcChhh
Q 040072 245 SAVMVKYVSSLDN 257 (354)
Q Consensus 245 ~~vM~~Yis~~~N 257 (354)
...+..|+.+-+.
T Consensus 209 ~~~~~~~l~~L~~ 221 (242)
T 2qk2_A 209 DKAVTPLLADVDP 221 (242)
T ss_dssp HHHHGGGGTTSCH
T ss_pred HHHHHHHHHhcCH
Confidence 3456667765443
No 53
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=47.83 E-value=27 Score=36.90 Aligned_cols=62 Identities=27% Similarity=0.308 Sum_probs=50.1
Q ss_pred hhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 218 QLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
.||++++|-+|.-+++||.-|+..|... +-...++.|.-+-.+|.+|.|++.-||=||-.+.
T Consensus 129 ~lL~~~df~vR~~alqlL~~L~~~r~~~-~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL 190 (651)
T 3grl_A 129 SLLEEFDFHVRWPGVKLLTSLLKQLGPQ-VQQIILVSPMGVSRLMDLLADSREVIRNDGVLLL 190 (651)
T ss_dssp HHTTCCCHHHHHHHHHHHHHHHHHSHHH-HHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHH
T ss_pred HHhcCccHHHHHHHHHHHHHHHhcCcHH-HHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHH
Confidence 5789999999999999999999777642 3333455889999999999999888888776443
No 54
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=46.34 E-value=1.3e+02 Score=24.99 Aligned_cols=92 Identities=10% Similarity=0.094 Sum_probs=62.0
Q ss_pred hHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccH
Q 040072 166 HMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNS 245 (354)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~ 245 (354)
.+..+.+.+..++-+|-.-|...+..+ .++.. ...+- .++.+++.-+|+.++.-||.+
T Consensus 113 ~~~~L~~~l~d~~~~vr~~a~~aL~~~--~~~~~------------~~~L~-~~l~d~~~~vr~~a~~aL~~~------- 170 (211)
T 3ltm_A 113 AVEPLIKALKDEDWFVRIAAAFALGEI--GDERA------------VEPLI-KALKDEDGWVRQSAADALGEI------- 170 (211)
T ss_dssp GHHHHHHHTTCSSHHHHHHHHHHHHHH--CCGGG------------HHHHH-HHTTCSSHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHc--CCHHH------------HHHHH-HHHcCCCHHHHHHHHHHHHHh-------
Confidence 344455566677777777777777665 22222 22332 678889999999999999987
Q ss_pred HHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeC
Q 040072 246 AVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVAN 286 (354)
Q Consensus 246 ~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVAN 286 (354)
.+++-+..+..+|.|++..++..|....+-+--+
T Consensus 171 -------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~ 204 (211)
T 3ltm_A 171 -------GGERVRAAMEKLAETGTGFARKVAVNYLETHKSF 204 (211)
T ss_dssp -------CSHHHHHHHHHHHHHCCHHHHHHHHHHHHC----
T ss_pred -------CchhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 4577888888999998888888776655544333
No 55
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=44.10 E-value=3.7e+02 Score=29.77 Aligned_cols=79 Identities=11% Similarity=0.105 Sum_probs=52.6
Q ss_pred CCchhhhhHhHHHHHHHhHHHHHHHHhc--chhHHHhhhhc----cCCCchhhhhHHHHHHHHHhc---ChhHHHHHHHh
Q 040072 136 EDGDVALTYGAIARECIRHQSVARYVLE--SEHMKKFFSFL----QIPNFDIASDAQATFKELLTR---HKSTVAEFLSK 206 (354)
Q Consensus 136 ~~~dial~~G~mLRecik~e~la~~iL~--~~~f~~fF~yv----~~~~FdiasDAf~Tfkellt~---Hk~lvaefl~~ 206 (354)
+.||.-...=..||.+..| +=..+|. .+.|..+++.+ ..+.-+|+.-+..++.+++.+ +...+.+|+.+
T Consensus 842 ~~Pe~r~~ff~ll~~~~~~--~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~~~~~~~~~~~~F~~~ 919 (1073)
T 3gjx_A 842 EYPEHRTNFFLLLQAVNSH--CFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVAQEEAAAQSFYQT 919 (1073)
T ss_dssp SCHHHHHHHHHHHHHHHHH--CGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHH--HhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHHHhhcChHHHHHHHHH
Confidence 3455555555555555554 1122333 34566666533 689999999999999999975 55677799988
Q ss_pred hHHHHHHHHH
Q 040072 207 NYDWFFQEYN 216 (354)
Q Consensus 207 Nyd~Ff~~yn 216 (354)
.|-.+..+.-
T Consensus 920 ~~~~~~~~i~ 929 (1073)
T 3gjx_A 920 YFCDILQHIF 929 (1073)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888766643
No 56
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=43.80 E-value=1.3e+02 Score=24.59 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=33.8
Q ss_pred hhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeee
Q 040072 218 QLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKL 282 (354)
Q Consensus 218 ~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKv 282 (354)
.++.+++.-+|+.++..||.+ .+++-+..+..+|.|++..++..|...+.-
T Consensus 114 ~~l~d~~~~vr~~a~~aL~~~--------------~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 114 KALKDEDWFVRIAAAFALGEI--------------GDERAVEPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHTTCSSHHHHHHHHHHHHHH--------------TCGGGHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 566777777777777777765 245666667777777777777666554443
No 57
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=41.43 E-value=1.6e+02 Score=31.80 Aligned_cols=195 Identities=11% Similarity=0.137 Sum_probs=108.7
Q ss_pred hcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC-Cchhhh--------------
Q 040072 78 EDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE-DGDVAL-------------- 142 (354)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~-~~dial-------------- 142 (354)
.+++..++..+..-+-+.|.-+...+..+.+.-.. . ...|+ |+++..++.+.. +++...
T Consensus 254 ~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~-~--~~~~l---~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 254 EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK-E--VYPHV---STIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC-C--CHHHH---HHHHHHHTTCCCCC-------------------
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH-H--HHHhH---HHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 46788888888776777788888888877774321 1 12243 556666655432 111000
Q ss_pred ----------hHh------HHHHHHHhHHHHHHHHhcch---------hHHHhhhhccCCCchhhhhHHHHHHHHHhcCh
Q 040072 143 ----------TYG------AIARECIRHQSVARYVLESE---------HMKKFFSFLQIPNFDIASDAQATFKELLTRHK 197 (354)
Q Consensus 143 ----------~~G------~mLRecik~e~la~~iL~~~---------~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk 197 (354)
.++ .-+|.+.- +.+..+.-..+ .+-.+..++.-++=+|-..|+.++..++..-.
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~-~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~ 406 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAA-KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTR 406 (1230)
T ss_dssp -----------------CTTHHHHHHH-HHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHC
T ss_pred cccchhhcccccccccccCHHHHHHHH-HHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhc
Confidence 000 01232221 11111111111 11223334445566788888888888876321
Q ss_pred h---------------HHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHH
Q 040072 198 S---------------TVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILM 262 (354)
Q Consensus 198 ~---------------lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM 262 (354)
. -+...+......++..+. +.+.+++.-+|.-++.+||+++.. ....+..|+ +.-+..++
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~l~~~~~~vr~~~~~~L~~l~~~--~~~~l~~~l--~~ll~~l~ 481 (1230)
T 1u6g_C 407 PVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALH-KQMKEKSVKTRQCCFNMLTELVNV--LPGALTQHI--PVLVPGII 481 (1230)
T ss_dssp CC------------CCCHHHHHHHHTTHHHHHHH-HHTTCSCHHHHHHHHHHHHHHHHH--STTTTGGGH--HHHHHHHH
T ss_pred cccccccCccccccccchHHHHHHHhhHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHH--chhhhHHHH--HHHHHHHH
Confidence 1 012333444455666664 678889998888899999999854 222233332 45567788
Q ss_pred HHhccCCc--Ccceecceeeeeee
Q 040072 263 NLLRDSNK--NIQFESFHVFKLFV 284 (354)
Q Consensus 263 ~LL~d~sk--~Iq~EAFhvFKvFV 284 (354)
.+|.|+.. .++.+|...+-.++
T Consensus 482 ~~L~d~~~~~~v~~~a~~~l~~~~ 505 (1230)
T 1u6g_C 482 FSLNDKSSSSNLKIDALSCLYVIL 505 (1230)
T ss_dssp HHTTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCcchHHHHHHHHHHHHH
Confidence 89999875 77888776666554
No 58
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=39.82 E-value=2.7e+02 Score=26.99 Aligned_cols=98 Identities=15% Similarity=0.064 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHh
Q 040072 42 SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYL 121 (354)
Q Consensus 42 ~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl 121 (354)
.|.-+.|..+|.++..|.+ +|+|+.+.|=+..|+.....-+-+...-+-.-|..++-+-.| .+=+
T Consensus 133 ~~lr~aLfsLk~~~q~D~~----------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~G-----m~gv 197 (339)
T 3dad_A 133 PELRRSLFSLKQIFQEDKD----------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDG-----MLGV 197 (339)
T ss_dssp HHHHHHHHHHHHHHHTCTT----------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHH-----HHHH
T ss_pred HHHHHHHHHHHHHhhcchH----------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcccc-----ccch
Confidence 4777889999998885543 999999999888888887776544444333344444332111 1124
Q ss_pred hhchhHHHHHHhhcCC--chhhhhHhHHHHHHHhH
Q 040072 122 EANFDIMDTLILGYED--GDVALTYGAIARECIRH 154 (354)
Q Consensus 122 ~~~peil~~L~~gY~~--~dial~~G~mLRecik~ 154 (354)
..||+.+..+..--+. +.+.-.+-.+|.-++-+
T Consensus 198 vs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~ 232 (339)
T 3dad_A 198 VAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEY 232 (339)
T ss_dssp HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHcc
Confidence 4588888888654432 22333344555444433
No 59
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=39.52 E-value=3.1e+02 Score=28.95 Aligned_cols=102 Identities=12% Similarity=0.085 Sum_probs=57.9
Q ss_pred CCCCcchhHHHHHHHHhhcccCC-----CcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHHHHhcch
Q 040072 91 LAMGPRRDATHVVANLQRQRVDT-----KLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESE 165 (354)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~-----~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~ 165 (354)
.+-+.|--++.++.+.+++.-.. ..|.-+.-.=+-.++..|... .+.+.-..|..+...++++--.+ +.+
T Consensus 49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~--~~~ir~~l~~~ia~ia~~d~p~~---Wp~ 123 (960)
T 1wa5_C 49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDR---WPT 123 (960)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTT---CTT
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhhCccc---hhH
Confidence 35566777777777777654321 111111111134456666553 35666667777776666643211 123
Q ss_pred hHHHhhhhccCCCchhhhhHHHHHHHHHhcCh
Q 040072 166 HMKKFFSFLQIPNFDIASDAQATFKELLTRHK 197 (354)
Q Consensus 166 ~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk 197 (354)
.+..+++.++.++...--.|+.++.+++.+.+
T Consensus 124 ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~ 155 (960)
T 1wa5_C 124 LLSDLASRLSNDDMVTNKGVLTVAHSIFKRWR 155 (960)
T ss_dssp HHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 45566667777776666678888888877543
No 60
>1ddb_A Protein (BID); apoptosis, programmed cell death, BCL-2 family, BH3 domain; NMR {Mus musculus} SCOP: f.1.4.1
Probab=37.00 E-value=17 Score=32.85 Aligned_cols=72 Identities=14% Similarity=0.225 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc------------HHHHHHHhCCCCCCCcchhHHHHHHHHh
Q 040072 40 KMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED------------TLRLLIASLPKLAMGPRRDATHVVANLQ 107 (354)
Q Consensus 40 k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d------------ll~~Li~~l~~L~fE~RKdv~~If~~ll 107 (354)
..-+|+..|.+|-.-+.+. ..|..+..|+..+-+.+ .+..|++..| -|+| +-.+..+++-||
T Consensus 82 ~ir~IA~qLa~igD~le~s----I~p~~v~~L~~~~~N~slsEEdrr~~LAaaleql~Qt~P-~dme-kEk~~L~lamLL 155 (195)
T 1ddb_A 82 IIHNIARHLAQIGDEMDHN----IQPTLVRQLAAQFMNGSLSEEDKRNCLAKALDEVKTAFP-RDME-NDKAMLIMTMLL 155 (195)
T ss_dssp SHHHHHHHHHHHHHHHGGG----CCSSSHHHHHHHHCCSSSSSSSTTHHHHHHHHHHHHHSC-STHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc----cCHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHcC-chHH-HHHHHHHHHHHH
Confidence 3568999999999999874 44577888888886432 4677888888 7887 666788999999
Q ss_pred hcccCCCcch
Q 040072 108 RQRVDTKLIA 117 (354)
Q Consensus 108 r~~~~~~~p~ 117 (354)
..++-+..|.
T Consensus 156 aKKVa~htPs 165 (195)
T 1ddb_A 156 AKKVASHAPS 165 (195)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHHhChH
Confidence 8887776663
No 61
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=35.63 E-value=2.4e+02 Score=27.22 Aligned_cols=106 Identities=15% Similarity=0.141 Sum_probs=57.1
Q ss_pred CCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHh
Q 040072 8 KPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIAS 87 (354)
Q Consensus 8 ~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~ 87 (354)
++.+|..+|+.+++.. . . +.+.+.|..++..|-.. | ..-.++|...+ +..|+..
T Consensus 2 ~~~~P~~yv~~L~~~~-------~-~--------~~~~~~L~~L~v~Lrt~----~-----~~Wv~~F~~~G-l~~Ll~~ 55 (386)
T 2bnx_A 2 SSRSAMMYIQELRSGL-------R-D--------MHLLSCLESLRVSLNNN----P-----VSWVQTFGAEG-LASLLDI 55 (386)
T ss_dssp -CCCHHHHHHHHTSCC-------C-H--------HHHHHHHHHHHHHHHHS----C-----HHHHHHHHHHH-HHHHHHH
T ss_pred CCCCHHHHHHHHHhcc-------c-h--------HHHHHHHHHHhHHHhcC----C-----cHHHHHHHHhH-HHHHHHH
Confidence 5789999999987631 1 1 23567788888887553 2 23455554433 2223333
Q ss_pred CCCC---CCCc--chhHH--HHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchh
Q 040072 88 LPKL---AMGP--RRDAT--HVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDV 140 (354)
Q Consensus 88 l~~L---~fE~--RKdv~--~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~di 140 (354)
|..+ .... +.|.. .-.-.++|- +-+..+..+++..||..+..|..+-+.+..
T Consensus 56 L~~~~~~~~~~~~~~d~~~~~~~l~CLka-lmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~ 114 (386)
T 2bnx_A 56 LKRLHDEKEETSGNYDSRNQHEIIRCLKA-FMNNKFGIKTMLETEEGILLLVRAMDPAVP 114 (386)
T ss_dssp HHHHHTCCTTTCCTTHHHHHHHHHHHHHH-HTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred HHHHHhcccccccchhHHHHHHHHHHHHH-HhCCHHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 3222 1111 11221 111122322 222234588999999999999988765544
No 62
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=35.16 E-value=75 Score=28.38 Aligned_cols=71 Identities=10% Similarity=0.285 Sum_probs=50.1
Q ss_pred HHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccH-HHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 208 YDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNS-AVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 208 yd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~-~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
.+....... ..|.+.|.=+|.+++.+|+.++-.-.-. ..+..|+ ++.-+..++.+|.|..+.++-.|+-.+
T Consensus 144 l~~ll~~l~-~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l-~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 144 NEDMLKDIL-EHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYL-KDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp THHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHH-TTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 445555554 6788999999999999999999543221 4445555 235667788888998888877766443
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=34.01 E-value=1.7e+02 Score=28.10 Aligned_cols=130 Identities=15% Similarity=0.169 Sum_probs=89.6
Q ss_pred hhHHHHHHhhcCCchhhhhHhHHHHHHHhHH-HHHHHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHH
Q 040072 125 FDIMDTLILGYEDGDVALTYGAIARECIRHQ-SVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEF 203 (354)
Q Consensus 125 peil~~L~~gY~~~dial~~G~mLRecik~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaef 203 (354)
|.++..|-++ ++++-..+-..|+....+. .....+.....+-.+.+.+..++=++.-.|...++.|...+...-...
T Consensus 5 ~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 5 PKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp HHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred HHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 3344444433 5666667777777755443 444467777788888888888888898899999998887555555444
Q ss_pred HHhhHHHHHHHHHHhhcc-CCCcchhhhhHHHHHHHhcccccHHHHHHHhcChhhHHHHHHHh
Q 040072 204 LSKNYDWFFQEYNSQLLE-SSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLL 265 (354)
Q Consensus 204 l~~Nyd~Ff~~yn~~Ll~-s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~~NLkliM~LL 265 (354)
....- ....- .||. +++.-+++++.-.|+.|-.+..|...+. + .-+..++.+|
T Consensus 83 ~~~G~---i~~Lv-~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~----~-g~i~~Lv~ll 136 (457)
T 1xm9_A 83 RRQNG---IREAV-SLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI----A-DALPVLADRV 136 (457)
T ss_dssp HHTTC---HHHHH-HHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH----H-HHHHHHHHHT
T ss_pred HHcCC---HHHHH-HHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH----h-ccHHHHHHHH
Confidence 44432 22232 6787 8889999999999999998876665332 3 5677777777
No 64
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=32.92 E-value=60 Score=32.88 Aligned_cols=113 Identities=12% Similarity=0.125 Sum_probs=70.4
Q ss_pred HhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHH-
Q 040072 169 KFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAV- 247 (354)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~v- 247 (354)
.+..++..++=+|--=|..++..+...|+.++.+ +.+.++ ..+.+++--.||.++.+|+.+.. ..|...
T Consensus 317 ~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~~~~----~~~~i~-----~~l~d~d~~Ir~~alelL~~l~~-~~nv~~i 386 (618)
T 1w63_A 317 ILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQR----HRSTIV-----DCLKDLDVSIKRRAMELSFALVN-GNNIRGM 386 (618)
T ss_dssp HHHHHHTCSSTTTHHHHHHHHHHHHHHHHHHHGG----GHHHHH-----HGGGSSCHHHHHHHHHHHHHHCC-SSSTHHH
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHHhhCHHHHHH----HHHHHH-----HHccCCChhHHHHHHHHHHHHcc-cccHHHH
Confidence 3334455555566666666666666666655433 344444 35566777788888888888764 444322
Q ss_pred ---HHHHhcCh------------------------hhHHHHHHHhccCCcCcceecceeeeeeee-CCCCCh
Q 040072 248 ---MVKYVSSL------------------------DNMRILMNLLRDSNKNIQFESFHVFKLFVA-NQNKPP 291 (354)
Q Consensus 248 ---M~~Yis~~------------------------~NLkliM~LL~d~sk~Iq~EAFhvFKvFVA-NP~K~~ 291 (354)
+..|+.+. ..+..++.+|++....++-|+.++++-.+. +|.--.
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~ 458 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHA 458 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHH
Confidence 33444321 256778888999888888898888876554 565433
No 65
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=30.27 E-value=2.9e+02 Score=24.43 Aligned_cols=134 Identities=11% Similarity=0.059 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc--HHHHHHHhC
Q 040072 11 TPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED--TLRLLIASL 88 (354)
Q Consensus 11 tP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d--ll~~Li~~l 88 (354)
+|..+|+.+++.+ . + +.+.+.|..++..|-.. | ..-.+++...+ .|..++..+
T Consensus 1 ~P~~yi~~L~~~~-------~-~--------~~~~~~L~~L~v~Lrt~----~-----~~Wv~~F~~~Gl~~L~~~L~~~ 55 (233)
T 2f31_A 1 SAMMYIQELRSGL-------R-D--------MHLLSCLESLRVSLNNN----P-----VSWVQTFGAEGLASLLDILKRL 55 (233)
T ss_dssp CHHHHHHHHTTTC-------C-H--------HHHHHHHHHHHHHHHHS----C-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc-------c-h--------HHHHHHHHHHhHhHhcC----C-----cHHHHHHHHhHHHHHHHHHHHH
Confidence 6899998887532 1 1 13567777777777543 2 23455553332 233333333
Q ss_pred CCCCCCc--chh------HHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHHH
Q 040072 89 PKLAMGP--RRD------ATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARY 160 (354)
Q Consensus 89 ~~L~fE~--RKd------v~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~ 160 (354)
..-.-.. +.| +...+..++.. .+..+++.+||+.+..|..+-+.+.... |-.+ -|-|+..
T Consensus 56 ~~~~~~~~~~~~~~~~~~~l~CLkalmn~-----~~G~~~vl~~~~~i~~l~~~L~s~~~~~------r~~~-leLL~~l 123 (233)
T 2f31_A 56 HDEKEETSGNYDSRNQHEIIRCLKAFMNN-----KFGIKTMLETEEGILLLVRAMDPAVPNM------MIDA-AKLLSAL 123 (233)
T ss_dssp HTCC-----CCHHHHHHHHHHHHHHHTSS-----HHHHHHHHTSSSHHHHHHTTCCTTSHHH------HHHH-HHHHHHH
T ss_pred HhcccccchhhhHHHHHHHHHHHHHHhCC-----hHHHHHHHcCcHHHHHHHHHhCCCCchH------HHHH-HHHHHHH
Confidence 2111111 112 22233333333 3558899999999999998886555521 1111 2444544
Q ss_pred HhcchhHHHhhhhccCCC-chhhhhHHHHHHH
Q 040072 161 VLESEHMKKFFSFLQIPN-FDIASDAQATFKE 191 (354)
Q Consensus 161 iL~~~~f~~fF~yv~~~~-FdiasDAf~Tfke 191 (354)
.+.++ ... ++..-+|+.+++.
T Consensus 124 c~~~~----------~~G~~~~VL~Al~~~~~ 145 (233)
T 2f31_A 124 CILPQ----------PEDMNERVLEAMTERAE 145 (233)
T ss_dssp HTCSS----------SSCHHHHHHHHHHHHHH
T ss_pred HhCCC----------CCChHHHHHHHHHHHHH
Confidence 44332 124 6667777777654
No 66
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=30.07 E-value=1.9e+02 Score=26.19 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhccccc-hH-hHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhh-cHHHHHHHhCC
Q 040072 13 VELVKLTRELLLYANRTAET-RE-KKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKE-DTLRLLIASLP 89 (354)
Q Consensus 13 ~elVr~l~e~l~~l~~~~~~-~~-~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~-dll~~Li~~l~ 89 (354)
.|.|....|-|.+||.-.+. .+ ++-.+ .=+++|.|..-=+.++|++. -.+|.|..|+.++++- --...++..+.
T Consensus 75 re~v~d~l~YLkkLD~l~~~Lq~h~~Lse-~l~l~kqLs~sLh~mC~~~p--ld~eLc~~l~~qL~~L~~~~~~ll~~l~ 151 (204)
T 2jqq_A 75 QEIIKDVLEYLKKLDEIYGSLRNHSQLTE-ALSLGKRLSKSLHEMCGIEP--LEEEICSGLIEQLYKLITASRRILESCA 151 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSSHHHH-HHHHHHHHHHHHHHHHTSSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhCCCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888888888888753210 00 11111 23588888888888999754 5578899999988753 12334444444
Q ss_pred CC
Q 040072 90 KL 91 (354)
Q Consensus 90 ~L 91 (354)
.+
T Consensus 152 dl 153 (204)
T 2jqq_A 152 DS 153 (204)
T ss_dssp SC
T ss_pred hc
Confidence 44
No 67
>2bid_A Protein (BID); programmed cell death, apoptosis regulation and amplification; NMR {Homo sapiens} SCOP: f.1.4.1
Probab=28.24 E-value=54 Score=29.50 Aligned_cols=81 Identities=15% Similarity=0.229 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHH------------HHHHhCCCCCCCcchhHHHHHHH
Q 040072 38 EEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLR------------LLIASLPKLAMGPRRDATHVVAN 105 (354)
Q Consensus 38 ~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~------------~Li~~l~~L~fE~RKdv~~If~~ 105 (354)
++....|+++|.+|-.-+.+. ..|..+..|+..+.+.++-. .|++..| .|.| +-.++.+.+-
T Consensus 82 Eeiir~IA~qLAqiGD~md~s----I~P~lV~~La~qf~N~~lsEEdrr~~LAaaleql~Qt~P-~Dme-qEKtmLvlam 155 (197)
T 2bid_A 82 EDIIRNIARHLAQVGDSMDRS----IPPGLVNGLALQLRNTSRSEEDRNRDLATALEQLLQAYP-RDME-KEKTMLVLAL 155 (197)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCTTCHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHTTSC-CSSC-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc----CChHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHCC-CcHh-HHHHHHHHHH
Confidence 334567999999999999884 44678888888887776543 3433333 2444 4456678888
Q ss_pred HhhcccCCCcc---------hhHHhhhc
Q 040072 106 LQRQRVDTKLI---------ACTYLEAN 124 (354)
Q Consensus 106 llr~~~~~~~p---------~v~Yl~~~ 124 (354)
||..++-+-.| ||.||..|
T Consensus 156 LLAKKVa~htPSLLrdVF~TTVnfInqN 183 (197)
T 2bid_A 156 LLAKKVASHTPSLLRDVFHTTVNFINQN 183 (197)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 88877665555 36666554
No 68
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=27.05 E-value=1.1e+02 Score=29.55 Aligned_cols=108 Identities=15% Similarity=0.126 Sum_probs=75.5
Q ss_pred HhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcc-cccHHH
Q 040072 169 KFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLD-RSNSAV 247 (354)
Q Consensus 169 ~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLld-r~N~~v 247 (354)
.+..++..++-++-..|..+++.+...+...-....... .+...- .||.|++.-.++.+...|+.|..+ ..|...
T Consensus 6 ~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g---~i~~Lv-~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 6 KAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLG---GICKLV-DLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTT---HHHHHH-HHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcC---CHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 344555666778888999999998755544343444443 344453 789999999999999999999975 444333
Q ss_pred HHHHhcChhhHHHHHHHhc-cCCcCcceecceeeeeee
Q 040072 248 MVKYVSSLDNMRILMNLLR-DSNKNIQFESFHVFKLFV 284 (354)
Q Consensus 248 M~~Yis~~~NLkliM~LL~-d~sk~Iq~EAFhvFKvFV 284 (354)
|.+..-+..++.+|+ +.+..+|.+|-...--..
T Consensus 82 ----i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa 115 (457)
T 1xm9_A 82 ----TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLS 115 (457)
T ss_dssp ----HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ----HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHh
Confidence 334577888888998 777788888765554333
No 69
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=26.70 E-value=4.1e+02 Score=25.02 Aligned_cols=191 Identities=13% Similarity=0.097 Sum_probs=110.8
Q ss_pred hcHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhh---chhHHHHHHhhcCCchhhhhHhHHHHHHHh-
Q 040072 78 EDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEA---NFDIMDTLILGYEDGDVALTYGAIARECIR- 153 (354)
Q Consensus 78 ~dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~---~peil~~L~~gY~~~dial~~G~mLRecik- 153 (354)
.+.+..|+..|..=+-+.+..++....+|-... ....-+.+.. =|-++..|.++. ++++--.+-..|+.+..
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~---~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~ 201 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRA---DVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAH 201 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTC---CHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTT
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccC---CHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcc
Confidence 356778888877655566666666666664320 0111222322 144555554432 34444444455666555
Q ss_pred HHHHH-HHHhcchhHHHhhhhccCCCc----hhhhhHHHHHHHHH---hcChhHHHHHHHhhHHHHHHHHHHhhccCCCc
Q 040072 154 HQSVA-RYVLESEHMKKFFSFLQIPNF----DIASDAQATFKELL---TRHKSTVAEFLSKNYDWFFQEYNSQLLESSSY 225 (354)
Q Consensus 154 ~e~la-~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfkell---t~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NY 225 (354)
.+... .++.....+-.+.+.+..++- +|..+|..+++-+= +.+..........+ .+...- .||.+++.
T Consensus 202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g---~i~~Lv-~lL~~~~~ 277 (354)
T 3nmw_A 202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENN---CLQTLL-QHLKSHSL 277 (354)
T ss_dssp CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT---HHHHHH-HHTTCSCH
T ss_pred ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC---CHHHHH-HHHcCCCh
Confidence 32332 333355566666666654432 46666666665543 34555554444443 244453 78999999
Q ss_pred chhhhhHHHHHHHhc-ccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 226 ITKRHAVKLLGDILL-DRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 226 VtkRQSLKLLgelLl-dr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
-+++.+...|+.|-. ++.|. .+|-+..-+..+..||++++..++-+|--..
T Consensus 278 ~v~~~A~~aL~nLa~~~~~~~----~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL 329 (354)
T 3nmw_A 278 TIVSNACGTLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 329 (354)
T ss_dssp HHHHHHHHHHHHHTSSCHHHH----HHHHHTTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 999999999999974 44443 3455566788889999988888777664333
No 70
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=26.66 E-value=64 Score=31.42 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=78.6
Q ss_pred CCchhhhhHHHHHHHHHhcChhHHHHHHHhh-HHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHHHHhcCh
Q 040072 177 PNFDIASDAQATFKELLTRHKSTVAEFLSKN-YDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSL 255 (354)
Q Consensus 177 ~~FdiasDAf~Tfkellt~Hk~lvaefl~~N-yd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~~Yis~~ 255 (354)
++=+.--+|.-+++.++..-+..|.||+..+ .+....... . .++|| .-.+|+-|++|+. +..=|+--|+++
T Consensus 130 ~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~-~--~~gN~--q~Y~L~AL~~LM~---~v~Gm~gvvs~~ 201 (339)
T 3dad_A 130 SSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGA-A--ADHNY--QSYILRALGQLML---FVDGMLGVVAHS 201 (339)
T ss_dssp CCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHT-T--SCHHH--HHHHHHHHHHHTT---SHHHHHHHHHCH
T ss_pred CCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHH-h--cChHH--HHHHHHHHHHHHh---ccccccchhCCH
Confidence 3344456888889998888899999999975 333332221 1 14555 6678999999985 455666777899
Q ss_pred hhHHHHHHHhccCCcCcceecceeeeeeeeCCC
Q 040072 256 DNMRILMNLLRDSNKNIQFESFHVFKLFVANQN 288 (354)
Q Consensus 256 ~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~ 288 (354)
+-++.+-.++.+...+|.=-|--++.+||-+..
T Consensus 202 ~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se 234 (339)
T 3dad_A 202 DTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE 234 (339)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc
Confidence 999999999998888888888888999997753
No 71
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=25.74 E-value=4.9e+02 Score=25.61 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=105.5
Q ss_pred cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhh-c--hhHHHHHHhhcCCchhhhhHhHHHHHHHh-H
Q 040072 79 DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEA-N--FDIMDTLILGYEDGDVALTYGAIARECIR-H 154 (354)
Q Consensus 79 dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~-~--peil~~L~~gY~~~dial~~G~mLRecik-~ 154 (354)
+.+..|+..|..=+-+.+.+++....+|-.. .....-+.+.. . |-++..|.++ .++++--.+-..|+.+.. .
T Consensus 243 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~---~~~~~k~~I~~~GaI~~LV~lLl~s-~~~~v~~~A~~aL~nLs~~~ 318 (458)
T 3nmz_A 243 GCMRALVAQLKSESEDLQQVIASVLRNLSWR---ADVNSKKTLREVGSVKALMECALEV-KKESTLKSVLSALWNLSAHC 318 (458)
T ss_dssp HHHHHHHHGGGCSCHHHHHHHHHHHHHHTSS---CCHHHHHHHHHTTHHHHHHHHHTTC-CSHHHHHHHHHHHHHHHHHC
T ss_pred CcHHHHHHHHhCCCHHHHHHHHHHHHHHhcC---CCHHHHHHHHHcCCHHHHHHHHhcC-CCHHHHHHHHHHHHHHccCC
Confidence 3466666666544444555555544444221 00011122222 1 3333333332 233333333344555554 2
Q ss_pred HHH-HHHHhcchhHHHhhhhccCCCc----hhhhhHHHHHHHHH---hcChhHHHHHHHhhHHHHHHHHHHhhccCCCcc
Q 040072 155 QSV-ARYVLESEHMKKFFSFLQIPNF----DIASDAQATFKELL---TRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYI 226 (354)
Q Consensus 155 e~l-a~~iL~~~~f~~fF~yv~~~~F----diasDAf~Tfkell---t~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYV 226 (354)
+.. ..++.....+-.+.+.+..+.= +|..+|..+++-+= +.+..........+. +...- .||.+++.-
T Consensus 319 ~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~---i~~Lv-~LL~~~~~~ 394 (458)
T 3nmz_A 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC---LQTLL-QHLKSHSLT 394 (458)
T ss_dssp HHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH---HHHHH-HHSSCSCHH
T ss_pred HHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc---HHHHH-HHHcCCChH
Confidence 222 2233355555555555554332 36666666666543 356655555555442 44453 799999999
Q ss_pred hhhhhHHHHHHHhc-ccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceee
Q 040072 227 TKRHAVKLLGDILL-DRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVF 280 (354)
Q Consensus 227 tkRQSLKLLgelLl-dr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvF 280 (354)
+++++...|+.+-. ++.|. .+|.+..-+..+..||++++..++-+|--..
T Consensus 395 v~~~A~~aL~nLa~~~~~~~----~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL 445 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQ----EALWDMGAVSMLKNLIHSKHKMIAMGSAAAL 445 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHH----HHHHHHTHHHHHHTTTTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHH----HHHHHCCCHHHHHHHHhCCCHHHHHHHHHHH
Confidence 99999999999974 44443 4555667789999999999988887775443
No 72
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=25.09 E-value=97 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=16.2
Q ss_pred CCChHHHHHHHHHHHHHhhc
Q 040072 9 PKTPVELVKLTRELLLYANR 28 (354)
Q Consensus 9 ~ktP~elVr~l~e~l~~l~~ 28 (354)
||+|+|+...+-..|..+..
T Consensus 1 p~~~~dLt~~vq~LL~qmq~ 20 (48)
T 3ci9_A 1 PKTVQDLTSVVQTLLQQMQD 20 (48)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 79999998888888776653
No 73
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=22.86 E-value=13 Score=27.86 Aligned_cols=34 Identities=32% Similarity=0.577 Sum_probs=27.1
Q ss_pred HHHHHHHhhcCCCCC--cccccHHHHHHHHHHHhcC
Q 040072 301 RSKLLRFFSDFNIDR--ANEQFEADKLLVIREIATL 334 (354)
Q Consensus 301 r~kLl~fl~~f~~d~--~DeqF~dEK~~lI~~I~~L 334 (354)
.+||-.||++|..+- .=.++..+.+.++++|+++
T Consensus 4 ~~KLasFLkDFD~ev~~~~~~~~~~~~~llk~i~~~ 39 (62)
T 2qfa_B 4 RRKLASFLKDFDREVEIRIKQIESDRQNLLKEVDNL 39 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999997643 4567888899999988764
No 74
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=22.75 E-value=5.6e+02 Score=25.89 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCC--hHHHHHHHHHHHhhc----HHHHHHHhCCC
Q 040072 17 KLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPN--ADACEQLTREFFKED----TLRLLIASLPK 90 (354)
Q Consensus 17 r~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~--~e~~~qLa~ei~~~d----ll~~Li~~l~~ 90 (354)
|.+++.+..+....+ .+..+. -+.+-+..+|.-+-++...++. .+.+..|..-+.... .....+.+++.
T Consensus 11 ~~l~~~I~~ir~~~~-~~~e~~----~i~~E~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~s~~~~~vvkl~~s 85 (621)
T 2vgl_A 11 RGLAVFISDIRNCKS-KEAEIK----RINKELANIRSKFKGDKALDGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLSS 85 (621)
T ss_dssp HHHHHHHHHHHHCSS-HHHHHH----HHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHSCCCCSCHHHHHHGGGC
T ss_pred hhHHHHHHHHHcCCC-HHHHHH----HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcCCCCchhHHHHHHHhcC
Q ss_pred CCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcC---CchhhhhHhHHHHH--HHhHHHHHHHHhcch
Q 040072 91 LAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYE---DGDVALTYGAIARE--CIRHQSVARYVLESE 165 (354)
Q Consensus 91 L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~---~~dial~~G~mLRe--cik~e~la~~iL~~~ 165 (354)
=+++.||-+..-...+.... ||.+...+.... +..-.+.-|.=||- +++.+.++..++..
T Consensus 86 ~~~~~Krl~YL~l~~~~~~~--------------~e~~~L~iN~l~kDl~~~n~~ir~lALr~L~~i~~~e~~~~l~~~- 150 (621)
T 2vgl_A 86 NRYTEKQIGYLFISVLVNSN--------------SELIRLINNAIKNDLASRNPTFMGLALHCIANVGSREMAEAFAGE- 150 (621)
T ss_dssp SCHHHHHHHHHHHHHSCCCC--------------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHCCHHHHHHHTTH-
T ss_pred CCHHHHHHHHHHHHHHccCC--------------cHHHHHHHHHHHHhcCCCCHHHHHHHHHHhhccCCHHHHHHHHHH-
Q ss_pred hHHHhhhhc--cCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 040072 166 HMKKFFSFL--QIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDI 238 (354)
Q Consensus 166 ~f~~fF~yv--~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgel 238 (354)
..+-+ ..++=-|-.-|.-.+-.+...+++++ .++.|++... .||..+|.-++.-++-+|+++
T Consensus 151 ----v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~------~~~~~~~~l~-~lL~d~d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 151 ----IPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV------PMGDWTSRVV-HLLNDQHLGVVTAATSLITTL 214 (621)
T ss_dssp ----HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC------CCCSCHHHHH-HHTTCSCHHHHHHHHHHHHHH
T ss_pred ----HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc------CchhHHHHHH-HHhCCCCccHHHHHHHHHHHH
No 75
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=22.30 E-value=1.5e+02 Score=25.12 Aligned_cols=97 Identities=9% Similarity=0.021 Sum_probs=58.6
Q ss_pred CCChHHHHHHHHHHHhh------cHHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHh--
Q 040072 62 EPNADACEQLTREFFKE------DTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLIL-- 133 (354)
Q Consensus 62 ep~~e~~~qLa~ei~~~------dll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~-- 133 (354)
.|..-...++|+..++. .++..|..-|..=.-..+-.+-+|...|++ .+....++.+..|..+|..|..
T Consensus 26 ~~pgylm~EIA~~T~~s~~~~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~---~Gs~~f~~~~r~~~~~Ik~l~~F~ 102 (140)
T 1vdy_A 26 VAPVYKLEEICDLLRSSHVSIVKEFSEFILKRLDNKSPIVKQKALRLIKYAVG---KSGSEFRREMQRNSVAVRNLFHYK 102 (140)
T ss_dssp CCCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTT---TSCHHHHHHHHHTTHHHHTTTTCC
T ss_pred CCcHHHHHHHHHHHHhcchhHHHHHHHHHHHHhcCCCcceeehHHHHHHHHHH---hCCHHHHHHHHHhHHHHHHHHhcC
Confidence 34445678888887774 356677777666544444455556666665 2234458888888888887743
Q ss_pred hcCCchhhhhHhHHHHHHHhHHHHHHHHhc
Q 040072 134 GYEDGDVALTYGAIARECIRHQSVARYVLE 163 (354)
Q Consensus 134 gY~~~dial~~G~mLRecik~e~la~~iL~ 163 (354)
|..+|--.---|...|+-. ..+...|..
T Consensus 103 g~~dp~~G~d~g~~VR~~A--kEl~~ll~d 130 (140)
T 1vdy_A 103 GHPDPLKGDALNKAVRETA--HETISAIFS 130 (140)
T ss_dssp CCCCTTTSSCHHHHHHHHH--HHHHHHHTC
T ss_pred CCCCcccccchhHHHHHHH--HHHHHHHhC
Confidence 3333334556778888765 344444443
No 76
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=21.41 E-value=2.6e+02 Score=22.85 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHH
Q 040072 40 KMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRL 83 (354)
Q Consensus 40 k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~ 83 (354)
+.+|++|.|..|-.-|-..+=.++.-+...+|++++-+.|+-..
T Consensus 37 ~~~D~~KRL~~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A 80 (118)
T 2yru_A 37 VCDDISRRLALLREQWAGGKLSIPVKKRMALLVQELLHHQWDAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 36899999999988887655455556778899999888876543
No 77
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=21.12 E-value=3.3e+02 Score=22.05 Aligned_cols=82 Identities=11% Similarity=0.090 Sum_probs=51.3
Q ss_pred HHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHH
Q 040072 167 MKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSA 246 (354)
Q Consensus 167 f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~ 246 (354)
+..+...+..++-+|-.-|...+..+= .+. ....+- .++.+++.-+|+.++.-||.+
T Consensus 109 ~~~L~~~l~d~~~~vr~~a~~aL~~~~--~~~------------~~~~L~-~~l~d~~~~vr~~A~~aL~~~-------- 165 (201)
T 3ltj_A 109 VEPLIKALKDEDWFVRIAAAFALGEIG--DER------------AVEPLI-KALKDEDGWVRQSAADALGEI-------- 165 (201)
T ss_dssp HHHHHHHTTCSSHHHHHHHHHHHHHHT--CGG------------GHHHHH-HHTTCSSHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHhC--CHH------------HHHHHH-HHHcCCCHHHHHHHHHHHHHh--------
Confidence 333444555566666655555555441 111 122332 677888888899999988887
Q ss_pred HHHHHhcChhhHHHHHHHhccCCcCcceecc
Q 040072 247 VMVKYVSSLDNMRILMNLLRDSNKNIQFESF 277 (354)
Q Consensus 247 vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAF 277 (354)
.+++-+..+..+|.|++..++..|-
T Consensus 166 ------~~~~~~~~L~~~l~d~~~~vr~~A~ 190 (201)
T 3ltj_A 166 ------GGERVRAAMEKLAETGTGFARKVAV 190 (201)
T ss_dssp ------CSHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ------CchhHHHHHHHHHhCCCHHHHHHHH
Confidence 4667777777888777776665543
Done!