Query 040073
Match_columns 407
No_of_seqs 254 out of 2115
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 04:50:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040073.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040073hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03200 cellulose synthase-in 100.0 3.7E-27 8.1E-32 258.9 31.1 281 96-389 444-765 (2102)
2 PLN03200 cellulose synthase-in 100.0 4.1E-27 9E-32 258.6 31.0 283 97-388 12-312 (2102)
3 KOG0166 Karyopherin (importin) 99.9 4.4E-25 9.6E-30 214.3 25.3 282 96-388 107-393 (514)
4 KOG4224 Armadillo repeat prote 99.9 8.2E-25 1.8E-29 199.9 20.1 279 97-388 166-446 (550)
5 KOG4224 Armadillo repeat prote 99.9 1.6E-24 3.6E-29 198.0 19.0 275 98-387 126-404 (550)
6 KOG0166 Karyopherin (importin) 99.9 4.4E-24 9.6E-29 207.4 23.0 308 71-389 127-437 (514)
7 COG5064 SRP1 Karyopherin (impo 99.9 2.6E-23 5.7E-28 188.6 16.9 281 97-387 70-355 (526)
8 COG5064 SRP1 Karyopherin (impo 99.9 1.2E-22 2.5E-27 184.5 17.8 307 69-386 130-441 (526)
9 PF04564 U-box: U-box domain; 99.9 1.4E-23 3.1E-28 154.6 5.6 72 6-81 1-72 (73)
10 smart00504 Ubox Modified RING 99.8 9E-19 1.9E-23 126.0 5.1 63 9-76 1-63 (63)
11 PF05804 KAP: Kinesin-associat 99.8 4.5E-16 9.7E-21 159.6 26.2 254 114-387 266-519 (708)
12 PF05804 KAP: Kinesin-associat 99.7 1.2E-15 2.6E-20 156.5 26.8 276 97-386 289-606 (708)
13 KOG4199 Uncharacterized conser 99.7 3.4E-15 7.4E-20 136.0 24.4 270 109-389 118-404 (461)
14 KOG2122 Beta-catenin-binding p 99.7 4.8E-15 1.1E-19 154.9 21.3 264 116-387 317-601 (2195)
15 KOG4199 Uncharacterized conser 99.7 2E-13 4.4E-18 124.5 27.6 282 96-386 143-442 (461)
16 KOG1048 Neural adherens juncti 99.6 8.7E-14 1.9E-18 140.1 18.9 286 97-389 232-596 (717)
17 PF04826 Arm_2: Armadillo-like 99.6 5E-13 1.1E-17 122.2 21.3 195 95-303 9-207 (254)
18 KOG1048 Neural adherens juncti 99.5 3.2E-12 6.9E-17 128.9 24.3 284 97-389 274-685 (717)
19 PF04826 Arm_2: Armadillo-like 99.5 1.6E-12 3.5E-17 118.9 20.4 199 186-396 13-213 (254)
20 PF15227 zf-C3HC4_4: zinc fing 99.5 1.3E-14 2.9E-19 94.0 2.8 40 12-51 1-42 (42)
21 PF10508 Proteasom_PSMB: Prote 99.4 6.2E-10 1.4E-14 112.8 29.1 284 97-389 76-421 (503)
22 KOG2122 Beta-catenin-binding p 99.3 2.7E-11 5.8E-16 127.6 14.0 229 112-346 366-604 (2195)
23 PLN03208 E3 ubiquitin-protein 99.3 2.1E-12 4.5E-17 110.5 3.8 61 4-67 13-87 (193)
24 TIGR00599 rad18 DNA repair pro 99.3 4.1E-12 8.8E-17 121.8 5.6 71 5-80 22-92 (397)
25 cd00020 ARM Armadillo/beta-cat 99.3 1E-10 2.3E-15 94.7 12.3 114 225-342 5-119 (120)
26 PF10508 Proteasom_PSMB: Prote 99.2 3.2E-09 6.9E-14 107.6 24.5 251 100-370 5-255 (503)
27 cd00020 ARM Armadillo/beta-cat 99.2 1.5E-10 3.2E-15 93.9 12.0 112 186-301 8-120 (120)
28 KOG4500 Rho/Rac GTPase guanine 99.2 3.6E-09 7.7E-14 100.0 20.9 264 117-390 244-521 (604)
29 PF11789 zf-Nse: Zinc-finger o 99.2 1.1E-11 2.4E-16 85.7 1.8 45 9-53 11-56 (57)
30 PF13445 zf-RING_UBOX: RING-ty 99.1 3.8E-11 8.2E-16 77.7 2.3 37 12-49 1-43 (43)
31 PF03224 V-ATPase_H_N: V-ATPas 99.1 9.2E-09 2E-13 98.2 19.6 239 140-383 56-309 (312)
32 PF13923 zf-C3HC4_2: Zinc fing 99.1 4.9E-11 1.1E-15 76.4 2.6 38 12-51 1-39 (39)
33 KOG4500 Rho/Rac GTPase guanine 99.1 2.3E-08 4.9E-13 94.7 20.2 286 95-387 84-389 (604)
34 KOG0946 ER-Golgi vesicle-tethe 99.0 1.6E-07 3.4E-12 94.9 24.9 267 96-371 20-328 (970)
35 PF00097 zf-C3HC4: Zinc finger 99.0 2.1E-10 4.6E-15 74.5 2.9 40 12-51 1-41 (41)
36 PRK09687 putative lyase; Provi 99.0 7.2E-08 1.6E-12 90.2 21.0 119 228-384 160-278 (280)
37 KOG4642 Chaperone-dependent E3 99.0 3.5E-10 7.6E-15 99.2 3.9 75 3-81 205-279 (284)
38 KOG0287 Postreplication repair 98.9 6E-10 1.3E-14 101.4 2.5 66 8-78 22-87 (442)
39 KOG1222 Kinesin associated pro 98.9 2.2E-07 4.8E-12 89.2 19.6 271 102-386 308-620 (791)
40 PF14835 zf-RING_6: zf-RING of 98.9 4.7E-10 1E-14 77.5 1.1 59 8-73 6-65 (65)
41 PF13920 zf-C3HC4_3: Zinc fing 98.9 1.5E-09 3.3E-14 73.7 3.2 47 8-56 1-48 (50)
42 KOG1222 Kinesin associated pro 98.9 6.7E-08 1.5E-12 92.7 15.3 193 158-364 280-473 (791)
43 PF03224 V-ATPase_H_N: V-ATPas 98.8 2.4E-07 5.1E-12 88.5 18.0 206 177-389 47-270 (312)
44 KOG0168 Putative ubiquitin fus 98.8 7.4E-07 1.6E-11 90.8 21.0 259 97-370 166-438 (1051)
45 PHA02929 N1R/p28-like protein; 98.8 4.1E-09 8.9E-14 94.5 3.9 49 6-56 171-227 (238)
46 PF13639 zf-RING_2: Ring finge 98.8 2.8E-09 6E-14 70.3 1.9 40 11-52 2-44 (44)
47 KOG0168 Putative ubiquitin fus 98.8 7.8E-07 1.7E-11 90.6 19.5 202 158-369 185-391 (1051)
48 cd00256 VATPase_H VATPase_H, r 98.7 8.3E-06 1.8E-10 79.9 25.5 255 139-399 53-319 (429)
49 KOG2160 Armadillo/beta-catenin 98.7 1.5E-06 3.3E-11 81.3 19.2 183 112-301 98-282 (342)
50 PRK09687 putative lyase; Provi 98.7 1E-06 2.2E-11 82.5 18.2 195 140-388 55-250 (280)
51 PRK13800 putative oxidoreducta 98.7 3.1E-06 6.6E-11 92.0 23.7 229 96-386 619-865 (897)
52 COG5432 RAD18 RING-finger-cont 98.7 9.1E-09 2E-13 91.8 3.1 66 10-80 26-91 (391)
53 KOG2177 Predicted E3 ubiquitin 98.6 1.8E-08 3.9E-13 96.4 3.8 69 6-81 10-78 (386)
54 KOG0823 Predicted E3 ubiquitin 98.6 1.4E-08 3E-13 88.8 2.6 55 9-66 47-102 (230)
55 KOG0320 Predicted E3 ubiquitin 98.6 1.3E-08 2.9E-13 84.9 2.3 47 10-58 132-180 (187)
56 cd00162 RING RING-finger (Real 98.6 2.8E-08 6E-13 65.5 3.4 43 11-54 1-44 (45)
57 PRK13800 putative oxidoreducta 98.6 2.1E-05 4.5E-10 85.6 26.0 228 97-384 651-895 (897)
58 KOG2160 Armadillo/beta-catenin 98.6 3E-06 6.6E-11 79.4 16.2 183 157-344 99-283 (342)
59 cd00256 VATPase_H VATPase_H, r 98.5 5.4E-05 1.2E-09 74.2 24.9 275 101-386 104-423 (429)
60 smart00184 RING Ring finger. E 98.5 7.5E-08 1.6E-12 61.2 3.3 39 12-51 1-39 (39)
61 KOG2042 Ubiquitin fusion degra 98.5 9.7E-08 2.1E-12 99.6 5.6 72 5-81 866-938 (943)
62 PHA02926 zinc finger-like prot 98.5 1.1E-07 2.5E-12 82.4 3.4 52 5-56 166-230 (242)
63 KOG0317 Predicted E3 ubiquitin 98.4 1.3E-07 2.8E-12 85.2 3.4 51 5-57 234-285 (293)
64 PF14634 zf-RING_5: zinc-RING 98.4 2E-07 4.3E-12 61.3 2.9 41 11-53 1-44 (44)
65 PF01602 Adaptin_N: Adaptin N 98.3 0.00015 3.4E-09 74.3 23.9 243 64-343 53-296 (526)
66 PF01602 Adaptin_N: Adaptin N 98.3 0.00012 2.5E-09 75.1 22.9 255 100-391 116-372 (526)
67 TIGR00570 cdk7 CDK-activating 98.3 7.3E-07 1.6E-11 82.4 5.7 50 8-58 2-56 (309)
68 PF05536 Neurochondrin: Neuroc 98.3 9.7E-05 2.1E-09 75.5 21.1 238 141-389 7-262 (543)
69 KOG2171 Karyopherin (importin) 98.3 0.00033 7.1E-09 74.5 25.2 256 112-383 264-541 (1075)
70 PF05536 Neurochondrin: Neuroc 98.3 5.9E-05 1.3E-09 77.0 18.4 201 186-394 6-216 (543)
71 KOG4646 Uncharacterized conser 98.2 3.1E-05 6.6E-10 62.5 11.7 152 227-385 16-167 (173)
72 COG5113 UFD2 Ubiquitin fusion 98.2 1.9E-06 4.1E-11 85.1 5.5 72 5-81 850-922 (929)
73 PF12678 zf-rbx1: RING-H2 zinc 98.2 1.4E-06 3E-11 64.0 3.4 44 6-52 17-73 (73)
74 PF14664 RICTOR_N: Rapamycin-i 98.2 0.00072 1.6E-08 65.8 22.7 264 112-386 40-362 (371)
75 KOG4646 Uncharacterized conser 98.2 3.4E-05 7.4E-10 62.3 10.8 131 186-326 17-149 (173)
76 KOG0311 Predicted E3 ubiquitin 98.1 4.7E-07 1E-11 83.6 0.3 68 6-76 40-108 (381)
77 KOG2660 Locus-specific chromos 98.1 1.2E-06 2.7E-11 80.5 2.9 68 6-75 12-81 (331)
78 PF14664 RICTOR_N: Rapamycin-i 98.1 0.00057 1.2E-08 66.5 21.1 251 118-385 4-266 (371)
79 COG5574 PEX10 RING-finger-cont 98.1 1.5E-06 3.3E-11 77.4 2.3 49 8-57 214-263 (271)
80 COG5222 Uncharacterized conser 98.1 4E-06 8.6E-11 75.5 5.0 65 10-79 275-342 (427)
81 KOG2734 Uncharacterized conser 98.1 0.0061 1.3E-07 58.8 25.8 244 115-366 102-369 (536)
82 KOG4159 Predicted E3 ubiquitin 98.0 3.4E-06 7.4E-11 81.4 3.3 75 3-79 78-154 (398)
83 KOG2164 Predicted E3 ubiquitin 98.0 3.5E-06 7.7E-11 81.8 3.4 72 7-81 184-262 (513)
84 KOG0289 mRNA splicing factor [ 98.0 1.4E-05 3.1E-10 75.8 6.9 51 10-65 1-52 (506)
85 PF00514 Arm: Armadillo/beta-c 98.0 8.1E-06 1.8E-10 52.7 3.7 40 261-301 2-41 (41)
86 KOG1293 Proteins containing ar 98.0 0.00037 8.1E-09 69.9 16.9 147 195-346 387-536 (678)
87 KOG0946 ER-Golgi vesicle-tethe 98.0 0.00049 1.1E-08 70.3 17.8 216 141-369 24-265 (970)
88 KOG2734 Uncharacterized conser 97.9 0.0042 9E-08 59.9 22.1 243 97-345 124-402 (536)
89 KOG0297 TNF receptor-associate 97.9 6.2E-06 1.3E-10 80.7 3.4 70 5-79 17-88 (391)
90 KOG0978 E3 ubiquitin ligase in 97.9 4.5E-06 9.8E-11 85.0 1.4 48 10-58 644-691 (698)
91 PF00514 Arm: Armadillo/beta-c 97.9 1.6E-05 3.4E-10 51.3 3.3 40 128-169 1-40 (41)
92 KOG1293 Proteins containing ar 97.8 0.00053 1.2E-08 68.9 15.3 151 112-269 392-544 (678)
93 KOG2171 Karyopherin (importin) 97.8 0.001 2.2E-08 70.9 17.8 232 101-344 351-595 (1075)
94 PTZ00429 beta-adaptin; Provisi 97.8 0.015 3.2E-07 61.6 25.9 249 97-383 31-280 (746)
95 KOG3678 SARM protein (with ste 97.8 0.0013 2.8E-08 63.7 16.2 248 131-389 172-453 (832)
96 PF13646 HEAT_2: HEAT repeats; 97.8 0.00027 5.8E-09 53.7 9.5 87 187-297 1-88 (88)
97 KOG2973 Uncharacterized conser 97.7 0.00085 1.8E-08 61.8 13.6 187 187-385 5-201 (353)
98 PF12348 CLASP_N: CLASP N term 97.7 0.00049 1.1E-08 62.5 11.8 177 112-303 22-208 (228)
99 KOG0824 Predicted E3 ubiquitin 97.7 1.8E-05 4E-10 71.8 2.4 46 11-57 9-54 (324)
100 PF12348 CLASP_N: CLASP N term 97.6 0.00089 1.9E-08 60.8 12.3 187 195-391 17-209 (228)
101 KOG1813 Predicted E3 ubiquitin 97.6 3E-05 6.5E-10 70.2 2.5 46 10-57 242-287 (313)
102 KOG3678 SARM protein (with ste 97.6 0.0022 4.8E-08 62.1 15.1 237 97-343 179-452 (832)
103 KOG2759 Vacuolar H+-ATPase V1 97.6 0.012 2.5E-07 56.6 19.7 255 140-399 66-332 (442)
104 PTZ00429 beta-adaptin; Provisi 97.6 0.042 9E-07 58.3 24.9 257 98-388 68-326 (746)
105 KOG2023 Nuclear transport rece 97.5 0.0083 1.8E-07 60.7 18.4 274 97-389 127-464 (885)
106 COG5369 Uncharacterized conser 97.5 0.002 4.3E-08 63.5 13.7 188 115-311 407-604 (743)
107 KOG2973 Uncharacterized conser 97.5 0.038 8.3E-07 51.2 21.2 235 97-343 43-315 (353)
108 PF10165 Ric8: Guanine nucleot 97.5 0.011 2.3E-07 59.3 19.1 266 117-388 1-337 (446)
109 KOG1002 Nucleotide excision re 97.5 7.4E-05 1.6E-09 72.6 3.6 51 8-58 535-588 (791)
110 TIGR02270 conserved hypothetic 97.5 0.016 3.5E-07 57.2 19.8 198 141-388 88-296 (410)
111 KOG2759 Vacuolar H+-ATPase V1 97.5 0.017 3.7E-07 55.5 18.8 226 112-344 172-439 (442)
112 KOG2879 Predicted E3 ubiquitin 97.5 7.4E-05 1.6E-09 67.0 2.8 48 8-55 238-286 (298)
113 KOG4413 26S proteasome regulat 97.4 0.02 4.3E-07 53.4 17.9 280 98-388 128-439 (524)
114 PF12861 zf-Apc11: Anaphase-pr 97.4 0.00019 4.1E-09 53.3 3.6 48 8-55 31-81 (85)
115 KOG0802 E3 ubiquitin ligase [P 97.3 7.8E-05 1.7E-09 76.5 1.5 49 7-57 289-342 (543)
116 KOG4367 Predicted Zn-finger pr 97.3 9.3E-05 2E-09 70.2 1.2 36 7-42 2-37 (699)
117 PF10165 Ric8: Guanine nucleot 97.3 0.15 3.2E-06 51.2 24.1 231 112-345 47-339 (446)
118 KOG1517 Guanine nucleotide bin 97.3 0.02 4.4E-07 60.7 17.9 194 99-302 473-672 (1387)
119 KOG1789 Endocytosis protein RM 97.2 0.19 4.2E-06 53.8 24.5 248 112-370 1787-2142(2235)
120 COG5152 Uncharacterized conser 97.2 0.00011 2.4E-09 62.4 1.2 46 10-57 197-242 (259)
121 smart00185 ARM Armadillo/beta- 97.2 0.00077 1.7E-08 43.0 4.6 40 261-301 2-41 (41)
122 PF13646 HEAT_2: HEAT repeats; 97.2 0.002 4.3E-08 48.8 7.7 88 141-255 1-88 (88)
123 KOG2979 Protein involved in DN 97.2 0.00033 7.2E-09 62.5 3.4 46 9-54 176-222 (262)
124 KOG0212 Uncharacterized conser 97.1 0.031 6.8E-07 55.6 17.0 204 176-388 200-406 (675)
125 PF09759 Atx10homo_assoc: Spin 97.1 0.0019 4.2E-08 50.2 6.8 68 114-181 3-70 (102)
126 KOG3039 Uncharacterized conser 97.1 0.00032 6.9E-09 61.9 2.6 37 6-42 40-76 (303)
127 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00031 6.7E-09 65.5 2.6 46 8-55 286-344 (491)
128 KOG3036 Protein involved in ce 97.1 0.05 1.1E-06 48.8 16.1 152 112-269 94-257 (293)
129 KOG1242 Protein containing ada 97.1 0.026 5.5E-07 56.9 16.1 187 187-389 256-446 (569)
130 KOG2023 Nuclear transport rece 97.1 0.0089 1.9E-07 60.5 12.8 176 140-323 129-308 (885)
131 KOG4628 Predicted E3 ubiquitin 97.1 0.00024 5.2E-09 67.1 1.7 47 10-57 230-279 (348)
132 TIGR02270 conserved hypothetic 97.0 0.14 3E-06 50.6 20.8 195 140-388 55-267 (410)
133 PF11841 DUF3361: Domain of un 96.9 0.018 4E-07 48.5 11.6 120 227-347 11-135 (160)
134 KOG1789 Endocytosis protein RM 96.9 0.022 4.7E-07 60.5 14.4 140 244-388 1739-1883(2235)
135 PF04641 Rtf2: Rtf2 RING-finge 96.9 0.00068 1.5E-08 62.8 3.3 50 6-58 110-163 (260)
136 smart00185 ARM Armadillo/beta- 96.9 0.0017 3.8E-08 41.3 4.3 39 129-169 2-40 (41)
137 KOG1241 Karyopherin (importin) 96.8 0.078 1.7E-06 54.7 17.3 196 139-347 319-534 (859)
138 KOG1059 Vesicle coat complex A 96.8 0.38 8.2E-06 49.6 21.8 142 228-388 300-443 (877)
139 KOG3039 Uncharacterized conser 96.8 0.00082 1.8E-08 59.3 2.6 53 8-65 220-276 (303)
140 KOG0826 Predicted E3 ubiquitin 96.8 0.00091 2E-08 61.6 2.8 50 6-57 297-347 (357)
141 KOG0212 Uncharacterized conser 96.7 0.05 1.1E-06 54.2 14.0 227 138-383 83-316 (675)
142 KOG2259 Uncharacterized conser 96.6 0.094 2E-06 53.3 16.0 179 142-340 237-472 (823)
143 KOG1241 Karyopherin (importin) 96.6 0.23 4.9E-06 51.4 18.7 275 98-390 129-479 (859)
144 PF11841 DUF3361: Domain of un 96.6 0.11 2.3E-06 44.0 13.8 120 176-301 5-131 (160)
145 COG5240 SEC21 Vesicle coat com 96.6 0.56 1.2E-05 47.2 20.7 224 156-397 279-561 (898)
146 KOG1242 Protein containing ada 96.6 0.32 7E-06 49.2 19.4 255 106-391 142-404 (569)
147 PF13513 HEAT_EZ: HEAT-like re 96.6 0.004 8.7E-08 42.7 4.5 55 199-257 1-55 (55)
148 KOG1517 Guanine nucleotide bin 96.6 0.064 1.4E-06 57.1 14.7 200 186-388 513-732 (1387)
149 COG5369 Uncharacterized conser 96.5 0.096 2.1E-06 52.1 15.0 191 158-356 404-605 (743)
150 KOG0804 Cytoplasmic Zn-finger 96.5 0.00085 1.8E-08 64.4 1.0 42 11-56 177-222 (493)
151 KOG2817 Predicted E3 ubiquitin 96.5 0.0016 3.5E-08 61.8 2.8 41 10-51 335-380 (394)
152 PF13513 HEAT_EZ: HEAT-like re 96.5 0.005 1.1E-07 42.2 4.5 55 244-299 1-55 (55)
153 KOG1062 Vesicle coat complex A 96.5 0.64 1.4E-05 48.5 21.0 140 105-262 114-266 (866)
154 KOG0213 Splicing factor 3b, su 96.4 0.072 1.6E-06 54.8 13.4 148 186-343 800-954 (1172)
155 KOG1734 Predicted RING-contain 96.4 0.002 4.4E-08 57.7 2.2 55 9-66 224-288 (328)
156 PF02891 zf-MIZ: MIZ/SP-RING z 96.3 0.0034 7.3E-08 42.2 2.6 46 9-54 2-50 (50)
157 COG1413 FOG: HEAT repeat [Ener 96.3 0.78 1.7E-05 44.1 20.0 155 98-303 43-211 (335)
158 smart00744 RINGv The RING-vari 96.2 0.0052 1.1E-07 41.1 3.1 42 11-52 1-49 (49)
159 PF04078 Rcd1: Cell differenti 96.2 0.12 2.6E-06 47.2 12.8 153 112-269 65-228 (262)
160 KOG1077 Vesicle coat complex A 96.1 1.4 3.1E-05 45.5 20.8 103 103-217 116-219 (938)
161 COG1413 FOG: HEAT repeat [Ener 96.1 0.66 1.4E-05 44.6 18.2 155 139-344 43-210 (335)
162 KOG2611 Neurochondrin/leucine- 96.1 0.24 5.3E-06 48.7 14.6 152 188-343 14-182 (698)
163 KOG4413 26S proteasome regulat 96.0 1.5 3.2E-05 41.4 21.3 272 106-388 90-377 (524)
164 KOG1645 RING-finger-containing 95.9 0.0039 8.4E-08 59.2 1.7 58 10-70 5-67 (463)
165 COG5231 VMA13 Vacuolar H+-ATPa 95.8 1.2 2.5E-05 41.9 17.2 223 158-387 166-427 (432)
166 KOG3113 Uncharacterized conser 95.8 0.0065 1.4E-07 54.0 2.6 48 8-59 110-161 (293)
167 PF05004 IFRD: Interferon-rela 95.7 1.9 4.1E-05 41.0 19.4 197 187-391 45-260 (309)
168 KOG0213 Splicing factor 3b, su 95.7 1.3 2.9E-05 46.0 18.8 150 231-389 803-955 (1172)
169 KOG3036 Protein involved in ce 95.7 1.6 3.4E-05 39.5 21.9 207 97-312 25-258 (293)
170 PF07814 WAPL: Wings apart-lik 95.5 0.88 1.9E-05 44.4 16.7 239 97-347 20-303 (361)
171 COG5181 HSH155 U2 snRNP splice 95.4 0.074 1.6E-06 53.6 8.7 152 186-343 605-759 (975)
172 KOG2999 Regulator of Rac1, req 95.4 0.48 1E-05 47.4 14.1 169 187-357 85-255 (713)
173 KOG0827 Predicted E3 ubiquitin 95.4 0.01 2.3E-07 56.0 2.6 50 7-57 2-57 (465)
174 KOG1039 Predicted E3 ubiquitin 95.3 0.0094 2E-07 56.8 2.0 49 8-56 160-221 (344)
175 PF06371 Drf_GBD: Diaphanous G 95.3 0.067 1.5E-06 46.7 7.3 79 264-342 100-186 (187)
176 PF04063 DUF383: Domain of unk 95.3 0.19 4.2E-06 44.1 10.0 123 157-282 11-158 (192)
177 KOG1061 Vesicle coat complex A 95.2 0.55 1.2E-05 48.8 14.2 66 102-172 125-191 (734)
178 KOG1785 Tyrosine kinase negati 95.1 0.0096 2.1E-07 56.3 1.5 47 11-57 371-417 (563)
179 PF09759 Atx10homo_assoc: Spin 95.1 0.056 1.2E-06 42.1 5.5 64 158-223 3-68 (102)
180 PF11701 UNC45-central: Myosin 95.1 0.22 4.8E-06 42.4 9.6 147 141-298 5-156 (157)
181 PF11793 FANCL_C: FANCL C-term 95.1 0.0062 1.4E-07 44.1 0.1 49 8-56 1-66 (70)
182 PF14668 RICTOR_V: Rapamycin-i 95.1 0.14 3.1E-06 37.2 7.2 65 247-311 4-68 (73)
183 PF12717 Cnd1: non-SMC mitotic 95.1 1.9 4.1E-05 37.4 15.7 112 198-325 1-112 (178)
184 PF11698 V-ATPase_H_C: V-ATPas 95.0 0.098 2.1E-06 41.9 6.8 76 180-258 38-114 (119)
185 KOG1077 Vesicle coat complex A 95.0 5.3 0.00011 41.6 21.3 268 98-391 149-436 (938)
186 KOG2259 Uncharacterized conser 94.9 0.19 4E-06 51.3 9.9 193 186-398 235-483 (823)
187 KOG1062 Vesicle coat complex A 94.8 6.2 0.00013 41.6 24.5 255 107-389 151-453 (866)
188 COG5096 Vesicle coat complex, 94.8 1.4 3E-05 46.5 16.3 102 187-301 94-195 (757)
189 KOG1001 Helicase-like transcri 94.8 0.011 2.5E-07 61.6 1.2 47 10-57 455-501 (674)
190 PF06371 Drf_GBD: Diaphanous G 94.8 0.71 1.5E-05 40.2 12.5 114 97-213 65-186 (187)
191 KOG1824 TATA-binding protein-i 94.7 2.9 6.4E-05 44.7 18.1 195 186-397 569-772 (1233)
192 PF05004 IFRD: Interferon-rela 94.7 3.5 7.5E-05 39.3 17.6 193 100-300 45-256 (309)
193 KOG4151 Myosin assembly protei 94.7 1.7 3.7E-05 45.5 16.3 220 129-366 494-720 (748)
194 KOG1059 Vesicle coat complex A 94.7 6.5 0.00014 41.0 22.1 249 102-388 148-402 (877)
195 COG5181 HSH155 U2 snRNP splice 94.6 1.3 2.8E-05 45.1 14.8 256 98-388 604-870 (975)
196 PF04063 DUF383: Domain of unk 94.6 0.28 6E-06 43.1 9.2 122 244-368 9-157 (192)
197 KOG4692 Predicted E3 ubiquitin 94.6 0.028 6E-07 52.5 3.0 51 4-56 415-467 (489)
198 PF08045 CDC14: Cell division 94.6 0.35 7.6E-06 44.3 10.1 98 202-301 108-207 (257)
199 KOG2274 Predicted importin 9 [ 94.5 2.4 5.1E-05 45.1 16.8 216 160-389 469-690 (1005)
200 KOG1824 TATA-binding protein-i 94.5 4 8.7E-05 43.8 18.4 231 102-347 861-1137(1233)
201 KOG4172 Predicted E3 ubiquitin 94.4 0.011 2.3E-07 39.5 -0.0 47 10-57 8-55 (62)
202 KOG1248 Uncharacterized conser 94.2 4.1 8.9E-05 44.6 18.4 216 156-388 669-898 (1176)
203 PF13764 E3_UbLigase_R4: E3 ub 94.2 9.7 0.00021 41.0 21.9 225 97-327 116-388 (802)
204 PF14570 zf-RING_4: RING/Ubox 94.2 0.044 9.5E-07 36.1 2.4 43 12-55 1-47 (48)
205 KOG3161 Predicted E3 ubiquitin 94.0 0.026 5.6E-07 56.7 1.7 38 8-49 10-51 (861)
206 COG5109 Uncharacterized conser 93.9 0.031 6.7E-07 51.4 1.8 43 10-52 337-383 (396)
207 PF14447 Prok-RING_4: Prokaryo 93.8 0.027 5.9E-07 38.0 1.0 45 9-57 7-51 (55)
208 PF12755 Vac14_Fab1_bd: Vacuol 93.8 0.37 8.1E-06 37.3 7.5 67 227-300 27-95 (97)
209 PF06025 DUF913: Domain of Unk 93.8 6.3 0.00014 38.7 17.7 126 186-311 107-243 (379)
210 COG5209 RCD1 Uncharacterized p 93.8 0.98 2.1E-05 40.2 10.7 150 112-267 115-276 (315)
211 PF11698 V-ATPase_H_C: V-ATPas 93.8 0.17 3.7E-06 40.5 5.6 72 227-301 43-115 (119)
212 KOG3800 Predicted E3 ubiquitin 93.7 0.048 1E-06 49.8 2.6 46 11-57 2-52 (300)
213 KOG0825 PHD Zn-finger protein 93.6 0.015 3.2E-07 59.6 -0.8 46 10-57 124-172 (1134)
214 KOG1943 Beta-tubulin folding c 93.5 11 0.00025 41.0 19.8 225 100-340 343-608 (1133)
215 PF12460 MMS19_C: RNAPII trans 93.5 3.8 8.3E-05 40.8 16.1 126 186-324 272-412 (415)
216 PF04078 Rcd1: Cell differenti 93.4 5.3 0.00011 36.7 15.1 141 243-386 8-166 (262)
217 COG5096 Vesicle coat complex, 93.4 2.1 4.5E-05 45.3 14.1 90 156-260 107-196 (757)
218 COG5215 KAP95 Karyopherin (imp 93.2 7.4 0.00016 39.6 16.9 267 112-396 149-447 (858)
219 PF12717 Cnd1: non-SMC mitotic 93.2 2.5 5.4E-05 36.7 12.6 108 157-282 4-112 (178)
220 COG5194 APC11 Component of SCF 93.1 0.094 2E-06 38.1 2.8 43 11-55 33-80 (88)
221 PF02985 HEAT: HEAT repeat; I 93.1 0.2 4.3E-06 29.7 3.9 30 186-215 1-30 (31)
222 PRK14707 hypothetical protein; 92.9 21 0.00046 42.0 21.5 269 100-383 165-440 (2710)
223 PF12719 Cnd3: Nuclear condens 92.7 9.2 0.0002 36.1 17.2 181 146-344 34-234 (298)
224 cd03569 VHS_Hrs_Vps27p VHS dom 92.7 0.87 1.9E-05 38.0 8.5 79 315-394 42-120 (142)
225 KOG2999 Regulator of Rac1, req 92.4 3 6.5E-05 42.0 12.9 152 228-386 84-240 (713)
226 PF08045 CDC14: Cell division 92.4 1.3 2.7E-05 40.8 9.8 101 243-344 104-208 (257)
227 PF11701 UNC45-central: Myosin 92.3 0.74 1.6E-05 39.1 7.8 143 187-339 5-155 (157)
228 PF05605 zf-Di19: Drought indu 92.2 0.067 1.5E-06 36.5 1.1 39 8-53 1-39 (54)
229 KOG1493 Anaphase-promoting com 92.2 0.064 1.4E-06 38.6 1.0 50 6-55 28-80 (84)
230 KOG1240 Protein kinase contain 92.2 3.9 8.4E-05 45.0 14.3 229 100-344 464-726 (1431)
231 PF08324 PUL: PUL domain; Int 92.2 2.7 5.8E-05 39.0 12.1 177 141-323 65-252 (268)
232 cd03568 VHS_STAM VHS domain fa 92.1 1.1 2.3E-05 37.6 8.4 79 315-394 38-116 (144)
233 PF08167 RIX1: rRNA processing 92.1 1.1 2.3E-05 38.5 8.7 111 186-301 26-143 (165)
234 COG5627 MMS21 DNA repair prote 92.0 0.074 1.6E-06 47.0 1.3 44 10-53 190-234 (275)
235 PF02985 HEAT: HEAT repeat; I 92.0 0.27 5.8E-06 29.1 3.4 29 228-259 1-29 (31)
236 KOG2611 Neurochondrin/leucine- 91.9 8.9 0.00019 38.2 15.3 143 232-383 16-177 (698)
237 PF12755 Vac14_Fab1_bd: Vacuol 91.8 1.1 2.3E-05 34.8 7.5 67 186-257 28-94 (97)
238 cd03561 VHS VHS domain family; 91.7 1.5 3.2E-05 36.1 8.8 78 315-393 38-117 (133)
239 PF08569 Mo25: Mo25-like; Int 91.5 14 0.0003 35.6 20.7 197 186-389 77-284 (335)
240 KOG1788 Uncharacterized conser 90.9 8.7 0.00019 41.9 14.9 259 118-389 663-983 (2799)
241 KOG1943 Beta-tubulin folding c 90.9 16 0.00035 39.9 17.2 148 227-385 341-497 (1133)
242 PF05918 API5: Apoptosis inhib 90.9 13 0.00028 38.2 16.0 135 97-256 22-159 (556)
243 KOG0883 Cyclophilin type, U bo 90.9 0.15 3.2E-06 48.4 2.2 33 10-42 41-73 (518)
244 smart00288 VHS Domain present 90.8 1.7 3.7E-05 35.8 8.3 80 315-395 38-118 (133)
245 PRK14707 hypothetical protein; 90.7 42 0.00092 39.8 24.1 282 91-387 198-487 (2710)
246 COG5175 MOT2 Transcriptional r 90.7 0.18 4E-06 46.9 2.5 47 11-58 16-66 (480)
247 PF08569 Mo25: Mo25-like; Int 90.7 14 0.00031 35.5 15.5 194 101-303 79-285 (335)
248 KOG4265 Predicted E3 ubiquitin 90.6 0.15 3.3E-06 48.1 2.0 46 10-57 291-337 (349)
249 KOG2930 SCF ubiquitin ligase, 90.6 0.16 3.5E-06 38.8 1.8 27 26-54 80-106 (114)
250 PF00790 VHS: VHS domain; Int 90.4 1.2 2.7E-05 36.9 7.2 79 315-394 43-124 (140)
251 PF06025 DUF913: Domain of Unk 90.1 8.8 0.00019 37.6 13.9 125 94-221 101-239 (379)
252 KOG1058 Vesicle coat complex C 90.0 18 0.00038 38.2 16.0 146 186-345 318-465 (948)
253 cd03567 VHS_GGA VHS domain fam 90.0 2.3 5E-05 35.3 8.3 80 315-395 39-123 (139)
254 KOG1061 Vesicle coat complex A 89.7 26 0.00057 36.9 17.2 131 66-218 62-193 (734)
255 KOG4185 Predicted E3 ubiquitin 89.6 0.28 6.2E-06 46.3 3.1 66 10-76 4-77 (296)
256 KOG1240 Protein kinase contain 89.6 18 0.00038 40.2 16.3 271 102-400 429-739 (1431)
257 COG5215 KAP95 Karyopherin (imp 89.5 8.3 0.00018 39.2 12.9 153 139-302 321-480 (858)
258 PF12460 MMS19_C: RNAPII trans 89.4 23 0.0005 35.2 16.6 187 186-388 190-394 (415)
259 COG5218 YCG1 Chromosome conden 89.1 23 0.0005 36.3 15.7 99 272-379 92-190 (885)
260 KOG4151 Myosin assembly protei 88.8 2.4 5.3E-05 44.4 9.2 140 113-258 558-698 (748)
261 PF12031 DUF3518: Domain of un 88.6 1.1 2.3E-05 40.5 5.7 82 157-239 140-228 (257)
262 PHA02825 LAP/PHD finger-like p 88.1 0.65 1.4E-05 38.8 3.7 49 8-57 7-60 (162)
263 KOG0211 Protein phosphatase 2A 88.0 39 0.00084 36.3 17.6 186 186-389 438-626 (759)
264 KOG4535 HEAT and armadillo rep 87.3 6.9 0.00015 38.9 10.7 159 186-344 434-604 (728)
265 PF08324 PUL: PUL domain; Int 87.3 7.3 0.00016 36.1 10.9 158 112-273 78-246 (268)
266 KOG1248 Uncharacterized conser 87.3 19 0.00041 39.8 14.8 174 112-301 712-898 (1176)
267 PF12031 DUF3518: Domain of un 87.1 1.8 4E-05 39.0 6.2 82 244-325 138-227 (257)
268 KOG2025 Chromosome condensatio 86.8 45 0.00097 35.1 16.5 102 186-295 86-187 (892)
269 KOG3002 Zn finger protein [Gen 86.7 0.59 1.3E-05 44.0 3.1 63 6-79 45-108 (299)
270 KOG1020 Sister chromatid cohes 86.7 27 0.00059 39.8 15.7 129 202-347 794-925 (1692)
271 KOG1820 Microtubule-associated 86.3 14 0.00031 39.8 13.4 182 103-301 258-443 (815)
272 PF13764 E3_UbLigase_R4: E3 ub 86.3 54 0.0012 35.5 21.0 245 133-388 111-406 (802)
273 PF11707 Npa1: Ribosome 60S bi 86.2 33 0.00071 33.0 18.6 158 100-263 58-241 (330)
274 KOG1820 Microtubule-associated 86.2 28 0.00061 37.6 15.4 188 188-388 256-443 (815)
275 PF12719 Cnd3: Nuclear condens 86.1 26 0.00056 33.1 14.0 170 186-370 27-209 (298)
276 KOG0396 Uncharacterized conser 85.7 0.6 1.3E-05 44.3 2.6 47 10-57 331-380 (389)
277 KOG1060 Vesicle coat complex A 85.6 54 0.0012 35.0 17.7 207 102-344 39-247 (968)
278 PF05918 API5: Apoptosis inhib 85.4 9.3 0.0002 39.2 11.0 74 197-283 34-108 (556)
279 PF04641 Rtf2: Rtf2 RING-finge 85.1 0.72 1.6E-05 42.7 2.8 34 10-43 35-69 (260)
280 KOG0414 Chromosome condensatio 84.8 8.8 0.00019 42.2 10.9 143 228-388 920-1064(1251)
281 KOG0301 Phospholipase A2-activ 84.7 54 0.0012 34.2 16.3 161 112-283 559-728 (745)
282 KOG2274 Predicted importin 9 [ 84.6 23 0.00051 38.0 13.5 178 139-323 530-713 (1005)
283 KOG0298 DEAD box-containing he 84.4 0.27 6E-06 53.7 -0.3 45 8-54 1152-1197(1394)
284 KOG4362 Transcriptional regula 84.4 0.42 9E-06 49.4 1.0 65 9-76 21-86 (684)
285 KOG1814 Predicted E3 ubiquitin 84.3 1.1 2.4E-05 43.2 3.6 46 9-54 184-238 (445)
286 KOG4653 Uncharacterized conser 84.1 47 0.001 35.7 15.4 58 95-153 724-782 (982)
287 KOG4464 Signaling protein RIC- 83.8 46 0.001 32.7 14.2 83 112-196 112-198 (532)
288 KOG4535 HEAT and armadillo rep 83.7 49 0.0011 33.2 14.5 266 110-389 268-560 (728)
289 KOG3665 ZYG-1-like serine/thre 83.7 23 0.00051 37.7 13.6 176 120-321 494-674 (699)
290 KOG1967 DNA repair/transcripti 83.4 15 0.00033 39.5 11.7 150 139-295 867-1018(1030)
291 COG5231 VMA13 Vacuolar H+-ATPa 83.3 42 0.00092 31.9 18.0 225 112-343 164-428 (432)
292 PLN02195 cellulose synthase A 83.3 0.74 1.6E-05 49.6 2.3 45 11-56 8-59 (977)
293 PLN02189 cellulose synthase 83.1 0.72 1.6E-05 50.0 2.1 45 11-56 36-87 (1040)
294 PHA02862 5L protein; Provision 83.0 1.1 2.3E-05 36.8 2.6 46 11-57 4-54 (156)
295 KOG2114 Vacuolar assembly/sort 82.4 0.72 1.6E-05 48.4 1.7 42 9-55 840-882 (933)
296 COG5209 RCD1 Uncharacterized p 81.9 17 0.00038 32.6 9.8 139 203-345 118-270 (315)
297 COG5220 TFB3 Cdk activating ki 81.7 0.56 1.2E-05 41.7 0.6 49 7-56 8-64 (314)
298 KOG1967 DNA repair/transcripti 81.4 16 0.00035 39.2 11.0 146 186-337 868-1018(1030)
299 PF10367 Vps39_2: Vacuolar sor 81.3 0.48 1E-05 37.2 0.1 34 4-37 73-108 (109)
300 KOG1058 Vesicle coat complex C 81.2 80 0.0017 33.6 18.7 231 112-384 221-459 (948)
301 PF12530 DUF3730: Protein of u 81.1 43 0.00092 30.4 18.2 142 141-301 2-151 (234)
302 KOG0414 Chromosome condensatio 81.0 10 0.00022 41.8 9.5 142 186-344 920-1065(1251)
303 PF11865 DUF3385: Domain of un 80.2 35 0.00076 29.0 11.1 140 226-381 9-150 (160)
304 KOG1020 Sister chromatid cohes 80.1 75 0.0016 36.5 15.8 142 186-345 817-962 (1692)
305 KOG4653 Uncharacterized conser 79.8 44 0.00095 35.9 13.4 179 192-386 734-916 (982)
306 PF08167 RIX1: rRNA processing 79.7 12 0.00025 32.1 8.1 114 227-346 25-146 (165)
307 cd03565 VHS_Tom1 VHS domain fa 79.4 15 0.00032 30.6 8.3 80 315-395 39-122 (141)
308 PLN02638 cellulose synthase A 79.2 1.1 2.5E-05 48.7 2.0 45 11-56 19-70 (1079)
309 PF14569 zf-UDP: Zinc-binding 79.1 2.2 4.8E-05 31.0 2.8 47 10-57 10-63 (80)
310 KOG2933 Uncharacterized conser 78.9 20 0.00044 33.7 9.7 135 186-335 89-226 (334)
311 KOG2956 CLIP-associating prote 78.9 74 0.0016 31.8 16.6 186 97-300 285-476 (516)
312 PLN02436 cellulose synthase A 78.6 1.2 2.7E-05 48.3 2.0 45 11-56 38-89 (1094)
313 PF05290 Baculo_IE-1: Baculovi 78.4 2.2 4.9E-05 34.5 2.9 50 8-57 79-133 (140)
314 KOG2025 Chromosome condensatio 78.2 9.9 0.00021 39.7 8.1 87 285-379 98-184 (892)
315 KOG4739 Uncharacterized protei 78.1 1.7 3.7E-05 39.0 2.5 48 20-76 15-63 (233)
316 PF11865 DUF3385: Domain of un 77.8 19 0.00041 30.6 8.7 143 186-341 11-155 (160)
317 PF14668 RICTOR_V: Rapamycin-i 77.6 8 0.00017 28.1 5.4 67 202-271 4-70 (73)
318 PF07191 zinc-ribbons_6: zinc- 77.6 0.23 4.9E-06 35.6 -2.6 42 9-57 1-42 (70)
319 PF10363 DUF2435: Protein of u 77.1 8.3 0.00018 29.5 5.7 69 98-170 3-72 (92)
320 PF14446 Prok-RING_1: Prokaryo 76.9 2.2 4.9E-05 28.9 2.2 26 10-35 6-35 (54)
321 PF11791 Aconitase_B_N: Aconit 76.4 10 0.00022 31.7 6.4 105 93-214 17-123 (154)
322 PRK11088 rrmA 23S rRNA methylt 76.3 1.2 2.6E-05 41.5 1.1 26 9-34 2-30 (272)
323 PF14225 MOR2-PAG1_C: Cell mor 75.9 67 0.0015 29.8 16.0 153 139-301 60-254 (262)
324 COG4530 Uncharacterized protei 75.9 2.8 6.1E-05 32.6 2.7 34 5-38 5-43 (129)
325 PF11707 Npa1: Ribosome 60S bi 75.8 77 0.0017 30.4 16.3 157 141-304 58-240 (330)
326 PF14205 Cys_rich_KTR: Cystein 75.8 1.9 4.1E-05 29.1 1.6 34 10-55 5-38 (55)
327 KOG1832 HIV-1 Vpr-binding prot 75.6 1.1E+02 0.0023 33.4 14.7 278 103-389 357-774 (1516)
328 smart00531 TFIIE Transcription 75.1 1.8 4E-05 36.3 1.8 39 7-57 97-135 (147)
329 PLN02915 cellulose synthase A 75.1 1.7 3.7E-05 47.2 1.9 46 10-56 16-68 (1044)
330 PF08746 zf-RING-like: RING-li 74.7 3.6 7.8E-05 26.5 2.7 40 12-51 1-43 (43)
331 PF14353 CpXC: CpXC protein 74.6 1.8 3.9E-05 35.3 1.6 48 9-56 1-49 (128)
332 cd03561 VHS VHS domain family; 74.5 20 0.00044 29.3 7.9 73 186-259 38-112 (133)
333 KOG1941 Acetylcholine receptor 74.2 1.7 3.7E-05 41.5 1.5 45 9-53 365-413 (518)
334 KOG1991 Nuclear transport rece 73.1 1.5E+02 0.0033 32.5 15.9 131 186-325 411-554 (1010)
335 PF14500 MMS19_N: Dos2-interac 73.0 79 0.0017 29.3 17.2 219 105-346 6-240 (262)
336 PRK06266 transcription initiat 72.2 3.2 6.8E-05 36.1 2.6 55 6-79 114-168 (178)
337 KOG2062 26S proteasome regulat 72.1 95 0.002 33.0 13.2 100 227-344 554-654 (929)
338 KOG2032 Uncharacterized conser 71.7 1E+02 0.0022 31.1 12.9 137 243-386 271-414 (533)
339 KOG1060 Vesicle coat complex A 71.3 1.5E+02 0.0033 31.8 19.7 188 142-368 38-227 (968)
340 PF12906 RINGv: RING-variant d 71.2 1.6 3.4E-05 28.8 0.4 30 22-51 13-47 (47)
341 cd03572 ENTH_epsin_related ENT 70.7 21 0.00046 28.8 6.8 72 316-388 40-119 (122)
342 cd03569 VHS_Hrs_Vps27p VHS dom 70.3 24 0.00051 29.4 7.3 71 186-259 42-114 (142)
343 KOG0301 Phospholipase A2-activ 70.1 1.3E+02 0.0029 31.5 13.7 160 158-326 561-728 (745)
344 cd00730 rubredoxin Rubredoxin; 70.0 2.1 4.5E-05 28.6 0.8 13 5-17 30-42 (50)
345 cd00350 rubredoxin_like Rubred 69.9 3.1 6.7E-05 25.0 1.5 10 45-54 17-26 (33)
346 PLN02400 cellulose synthase 69.9 2.2 4.8E-05 46.6 1.3 45 11-56 38-89 (1085)
347 PF10363 DUF2435: Protein of u 69.2 25 0.00053 26.9 6.6 72 186-262 4-75 (92)
348 KOG0567 HEAT repeat-containing 69.0 78 0.0017 29.3 10.7 127 91-257 147-278 (289)
349 KOG0211 Protein phosphatase 2A 69.0 1.5E+02 0.0032 32.0 14.4 183 186-388 480-664 (759)
350 PF14726 RTTN_N: Rotatin, an a 68.9 52 0.0011 25.5 8.7 72 222-297 25-96 (98)
351 PF06416 DUF1076: Protein of u 68.3 5.9 0.00013 31.0 3.0 53 3-57 33-92 (113)
352 KOG1992 Nuclear export recepto 68.2 1.8E+02 0.0039 31.4 15.5 40 186-225 499-539 (960)
353 PF00301 Rubredoxin: Rubredoxi 67.5 2.3 5E-05 28.0 0.5 13 5-17 30-42 (47)
354 COG5098 Chromosome condensatio 67.3 79 0.0017 33.4 11.4 107 229-345 301-417 (1128)
355 cd03568 VHS_STAM VHS domain fa 67.2 19 0.00041 30.1 6.1 72 227-301 37-110 (144)
356 COG1675 TFA1 Transcription ini 67.0 7.4 0.00016 33.5 3.7 33 45-79 132-164 (176)
357 PF06844 DUF1244: Protein of u 67.0 3.4 7.4E-05 29.0 1.3 13 30-42 11-23 (68)
358 PF13251 DUF4042: Domain of un 66.3 89 0.0019 27.2 11.9 142 113-261 2-176 (182)
359 KOG1940 Zn-finger protein [Gen 66.0 4.7 0.0001 37.4 2.4 42 10-53 159-204 (276)
360 KOG1812 Predicted E3 ubiquitin 65.8 4.2 9.2E-05 39.9 2.3 46 9-54 146-199 (384)
361 smart00288 VHS Domain present 65.6 41 0.00088 27.5 7.8 71 97-167 36-108 (133)
362 TIGR00373 conserved hypothetic 65.3 4.4 9.6E-05 34.4 2.0 35 6-57 106-140 (158)
363 PF04564 U-box: U-box domain; 65.2 1.4 3.1E-05 32.0 -0.8 36 45-82 4-41 (73)
364 KOG0825 PHD Zn-finger protein 64.9 5.5 0.00012 41.7 2.9 40 3-42 90-136 (1134)
365 KOG0314 Predicted E3 ubiquitin 64.7 4 8.7E-05 40.4 1.9 69 5-78 215-286 (448)
366 KOG2199 Signal transducing ada 64.1 42 0.00091 32.7 8.3 80 315-395 46-125 (462)
367 KOG2933 Uncharacterized conser 63.1 94 0.002 29.4 10.2 134 228-381 89-227 (334)
368 PF03854 zf-P11: P-11 zinc fin 61.5 4.2 9.1E-05 26.6 0.9 32 24-57 16-47 (50)
369 PF10571 UPF0547: Uncharacteri 61.4 4.8 0.0001 22.8 1.1 9 11-19 2-10 (26)
370 PF04499 SAPS: SIT4 phosphatas 60.6 66 0.0014 32.7 9.7 119 173-300 10-147 (475)
371 PF07800 DUF1644: Protein of u 60.4 4.1 8.9E-05 34.1 0.9 20 8-27 1-20 (162)
372 PF07814 WAPL: Wings apart-lik 60.3 1.7E+02 0.0037 28.4 17.4 93 141-237 23-116 (361)
373 KOG1078 Vesicle coat complex C 59.8 2.5E+02 0.0054 30.2 17.0 248 112-388 260-532 (865)
374 PF14500 MMS19_N: Dos2-interac 59.7 93 0.002 28.8 9.9 145 232-391 4-156 (262)
375 KOG2038 CAATT-binding transcri 59.7 1.3E+02 0.0027 32.3 11.3 125 227-365 304-433 (988)
376 PF12830 Nipped-B_C: Sister ch 59.5 1.2E+02 0.0026 26.4 10.9 145 142-303 11-169 (187)
377 PF00790 VHS: VHS domain; Int 58.4 37 0.0008 28.0 6.4 71 97-167 41-115 (140)
378 PF01347 Vitellogenin_N: Lipop 58.3 2.4E+02 0.0052 29.5 17.9 230 99-376 348-610 (618)
379 KOG0567 HEAT repeat-containing 57.9 1.6E+02 0.0035 27.3 19.6 202 138-389 66-281 (289)
380 PF05883 Baculo_RING: Baculovi 57.6 6 0.00013 32.3 1.4 44 9-54 26-78 (134)
381 KOG1815 Predicted E3 ubiquitin 57.6 8.1 0.00018 38.8 2.7 36 7-42 68-104 (444)
382 KOG4718 Non-SMC (structural ma 57.0 5.6 0.00012 34.9 1.2 44 11-56 183-227 (235)
383 KOG2956 CLIP-associating prote 56.8 2.2E+02 0.0048 28.6 17.5 184 141-343 285-477 (516)
384 PF11791 Aconitase_B_N: Aconit 56.6 74 0.0016 26.7 7.6 30 228-260 95-124 (154)
385 cd00197 VHS_ENTH_ANTH VHS, ENT 56.6 61 0.0013 25.5 7.2 71 315-386 38-113 (115)
386 KOG2152 Sister chromatid cohes 55.7 2.3E+02 0.005 30.2 12.4 196 99-315 333-558 (865)
387 PF06012 DUF908: Domain of Unk 55.7 47 0.001 31.9 7.5 78 201-278 238-323 (329)
388 cd03567 VHS_GGA VHS domain fam 55.6 82 0.0018 26.1 7.9 71 97-167 37-113 (139)
389 PF09538 FYDLN_acid: Protein o 54.9 10 0.00023 29.9 2.3 11 45-55 26-36 (108)
390 COG5240 SEC21 Vesicle coat com 54.6 2.7E+02 0.0058 28.9 17.3 71 186-262 265-335 (898)
391 PLN03086 PRLI-interacting fact 54.1 13 0.00028 38.2 3.5 52 5-56 449-515 (567)
392 COG5218 YCG1 Chromosome conden 53.7 2.8E+02 0.0061 28.9 15.8 101 186-294 92-192 (885)
393 PRK05978 hypothetical protein; 52.6 7.5 0.00016 32.5 1.2 12 45-56 52-63 (148)
394 COG5236 Uncharacterized conser 51.6 9.8 0.00021 36.0 2.0 49 7-55 59-107 (493)
395 PHA03096 p28-like protein; Pro 51.4 9 0.0002 35.8 1.7 44 10-53 179-231 (284)
396 KOG0915 Uncharacterized conser 51.4 4.6E+02 0.0099 30.7 19.3 188 186-389 1236-1428(1702)
397 TIGR02300 FYDLN_acid conserved 51.3 11 0.00024 30.4 1.9 13 7-19 7-19 (129)
398 PF01365 RYDR_ITPR: RIH domain 51.2 57 0.0012 28.8 6.9 120 129-259 33-169 (207)
399 COG3813 Uncharacterized protei 50.7 16 0.00034 26.2 2.4 29 26-58 26-54 (84)
400 PF13251 DUF4042: Domain of un 50.4 1.2E+02 0.0026 26.4 8.4 110 187-302 42-175 (182)
401 PF14631 FancD2: Fanconi anaem 50.3 2.2E+02 0.0048 33.3 12.6 101 193-303 443-544 (1426)
402 PF12530 DUF3730: Protein of u 49.8 2E+02 0.0043 26.0 19.0 124 112-258 16-150 (234)
403 KOG2137 Protein kinase [Signal 49.7 1.7E+02 0.0037 31.0 10.5 109 227-344 389-497 (700)
404 PF00096 zf-C2H2: Zinc finger, 49.3 4.2 9.1E-05 21.8 -0.5 13 10-22 1-13 (23)
405 COG2176 PolC DNA polymerase II 48.5 14 0.0003 41.0 2.7 41 5-58 910-952 (1444)
406 COG3492 Uncharacterized protei 48.4 8.9 0.00019 28.7 0.9 13 30-42 42-54 (104)
407 cd00729 rubredoxin_SM Rubredox 48.4 12 0.00026 22.7 1.4 10 45-54 18-27 (34)
408 PF06676 DUF1178: Protein of u 48.1 6.7 0.00015 32.8 0.3 35 26-67 9-52 (148)
409 PF04499 SAPS: SIT4 phosphatas 48.1 1.7E+02 0.0036 29.8 10.2 114 271-389 21-150 (475)
410 KOG4464 Signaling protein RIC- 47.8 2.9E+02 0.0064 27.4 11.2 138 187-325 47-198 (532)
411 COG5098 Chromosome condensatio 47.7 1E+02 0.0023 32.5 8.5 72 186-262 347-418 (1128)
412 PF08506 Cse1: Cse1; InterPro 47.5 2.8E+02 0.0061 27.1 13.2 146 101-254 213-370 (370)
413 KOG1609 Protein involved in mR 47.4 14 0.0003 35.1 2.4 53 5-57 73-135 (323)
414 KOG1087 Cytosolic sorting prot 47.3 55 0.0012 33.0 6.5 69 316-385 40-109 (470)
415 COG5116 RPN2 26S proteasome re 46.8 1E+02 0.0022 31.8 8.2 83 156-259 567-650 (926)
416 PF10521 DUF2454: Protein of u 46.5 1.3E+02 0.0028 28.1 8.7 71 186-259 120-203 (282)
417 KOG2005 26S proteasome regulat 45.4 3.4E+02 0.0074 28.7 11.7 138 227-370 48-217 (878)
418 PF10497 zf-4CXXC_R1: Zinc-fin 45.3 19 0.00042 28.2 2.5 45 10-54 8-70 (105)
419 COG5116 RPN2 26S proteasome re 45.3 3.8E+02 0.0082 27.9 12.6 64 227-301 551-615 (926)
420 KOG2462 C2H2-type Zn-finger pr 44.9 29 0.00064 32.0 3.9 53 6-58 158-228 (279)
421 PF08216 CTNNBL: Catenin-beta- 44.8 26 0.00056 27.6 3.0 41 247-288 63-103 (108)
422 KOG2137 Protein kinase [Signal 44.7 1.8E+02 0.0038 30.8 9.8 131 186-326 390-520 (700)
423 PF06012 DUF908: Domain of Unk 44.6 1.1E+02 0.0024 29.3 8.1 66 246-311 238-307 (329)
424 PRK14559 putative protein seri 44.2 17 0.00037 38.3 2.6 11 45-55 41-51 (645)
425 KOG1243 Protein kinase [Genera 43.9 4.2E+02 0.0091 28.1 15.2 245 112-386 269-513 (690)
426 PF13894 zf-C2H2_4: C2H2-type 43.9 7.7 0.00017 20.5 0.0 12 10-21 1-12 (24)
427 PF14726 RTTN_N: Rotatin, an a 43.7 1.5E+02 0.0033 22.9 8.8 92 112-208 2-94 (98)
428 PF09986 DUF2225: Uncharacteri 43.5 25 0.00053 31.5 3.2 53 8-60 4-63 (214)
429 PF12726 SEN1_N: SEN1 N termin 43.3 4.5E+02 0.0098 28.3 21.2 123 227-356 441-566 (727)
430 PF01347 Vitellogenin_N: Lipop 43.3 4.1E+02 0.0088 27.8 13.5 94 186-297 487-585 (618)
431 PF06906 DUF1272: Protein of u 43.2 24 0.00051 24.1 2.2 30 24-57 24-53 (57)
432 PF09162 Tap-RNA_bind: Tap, RN 43.1 17 0.00037 27.4 1.8 20 23-42 10-29 (88)
433 KOG3579 Predicted E3 ubiquitin 43.0 9.2 0.0002 35.1 0.4 42 10-51 269-317 (352)
434 PRK14892 putative transcriptio 42.1 15 0.00033 28.4 1.4 39 4-57 16-54 (99)
435 PF02146 SIR2: Sir2 family; I 42.1 43 0.00092 28.8 4.4 48 26-74 110-159 (178)
436 cd03572 ENTH_epsin_related ENT 41.8 1.2E+02 0.0025 24.6 6.5 50 100-149 40-92 (122)
437 PF10274 ParcG: Parkin co-regu 41.8 1.5E+02 0.0032 25.9 7.6 71 186-260 39-110 (183)
438 KOG1078 Vesicle coat complex C 41.7 4.8E+02 0.01 28.2 19.9 77 141-224 243-321 (865)
439 PF14311 DUF4379: Domain of un 40.4 13 0.00028 25.2 0.7 23 26-51 33-55 (55)
440 smart00834 CxxC_CXXC_SSSS Puta 40.3 14 0.00031 23.0 0.9 11 45-55 26-36 (41)
441 KOG3665 ZYG-1-like serine/thre 40.3 5E+02 0.011 27.9 17.7 91 253-344 494-588 (699)
442 PF07923 N1221: N1221-like pro 40.2 69 0.0015 30.2 5.9 55 97-151 59-128 (293)
443 PLN03205 ATR interacting prote 39.6 1.4E+02 0.0031 29.3 7.7 111 275-388 327-446 (652)
444 PF07923 N1221: N1221-like pro 39.5 71 0.0015 30.1 5.8 54 226-282 59-127 (293)
445 smart00734 ZnF_Rad18 Rad18-lik 39.4 14 0.0003 20.9 0.6 8 48-55 4-11 (26)
446 PRK01343 zinc-binding protein; 39.1 26 0.00057 24.1 2.0 14 9-22 9-22 (57)
447 KOG1991 Nuclear transport rece 37.5 6.1E+02 0.013 28.1 18.0 138 115-264 390-537 (1010)
448 KOG3842 Adaptor protein Pellin 37.0 31 0.00067 32.3 2.8 51 7-57 339-415 (429)
449 PF12331 DUF3636: Protein of u 36.9 66 0.0014 26.9 4.5 38 287-324 109-146 (149)
450 PF12660 zf-TFIIIC: Putative z 36.9 9.6 0.00021 29.6 -0.4 48 10-57 15-67 (99)
451 COG1773 Rubredoxin [Energy pro 36.7 17 0.00037 24.7 0.8 13 5-17 32-44 (55)
452 PF12830 Nipped-B_C: Sister ch 36.2 1.7E+02 0.0037 25.3 7.4 68 186-261 9-76 (187)
453 PRK04023 DNA polymerase II lar 36.1 32 0.0007 37.6 3.1 43 10-57 627-675 (1121)
454 COG5110 RPN1 26S proteasome re 35.8 4.3E+02 0.0093 27.4 10.5 141 227-371 47-220 (881)
455 PF03130 HEAT_PBS: PBS lyase H 35.5 43 0.00094 18.8 2.3 26 201-237 1-26 (27)
456 KOG2462 C2H2-type Zn-finger pr 35.2 23 0.00051 32.6 1.7 48 10-57 188-255 (279)
457 PF14663 RasGEF_N_2: Rapamycin 34.9 1E+02 0.0022 24.5 5.3 40 228-270 9-48 (115)
458 KOG0289 mRNA splicing factor [ 34.6 4.5E+02 0.0097 26.2 10.2 63 47-111 2-80 (506)
459 PF09889 DUF2116: Uncharacteri 34.5 20 0.00043 24.9 0.9 13 45-57 3-15 (59)
460 PF08273 Prim_Zn_Ribbon: Zinc- 34.2 17 0.00037 23.0 0.5 23 11-35 5-32 (40)
461 PF08216 CTNNBL: Catenin-beta- 34.1 66 0.0014 25.4 3.8 39 114-153 63-101 (108)
462 KOG2272 Focal adhesion protein 33.9 24 0.00051 32.0 1.5 52 3-55 177-231 (332)
463 KOG2062 26S proteasome regulat 33.8 6.3E+02 0.014 27.2 16.6 102 229-348 520-623 (929)
464 TIGR02605 CxxC_CxxC_SSSS putat 33.8 10 0.00022 25.3 -0.7 25 26-53 10-34 (52)
465 PF10272 Tmpp129: Putative tra 33.5 34 0.00073 33.2 2.6 34 24-57 303-352 (358)
466 KOG2932 E3 ubiquitin ligase in 33.2 21 0.00046 33.3 1.1 28 24-55 106-133 (389)
467 KOG3268 Predicted E3 ubiquitin 32.7 31 0.00067 29.5 1.9 32 25-56 188-228 (234)
468 PF12765 Cohesin_HEAT: HEAT re 32.5 74 0.0016 20.2 3.3 40 209-254 3-42 (42)
469 PHA02768 hypothetical protein; 32.3 50 0.0011 22.5 2.5 37 10-57 6-43 (55)
470 KOG1949 Uncharacterized conser 32.1 6.7E+02 0.014 26.9 12.6 146 188-342 177-330 (1005)
471 PF04216 FdhE: Protein involve 31.8 6.7 0.00015 36.9 -2.4 44 10-55 173-221 (290)
472 COG5319 Uncharacterized protei 31.0 68 0.0015 25.9 3.4 23 28-55 11-42 (142)
473 KOG0883 Cyclophilin type, U bo 30.2 26 0.00056 33.9 1.2 33 7-39 99-135 (518)
474 PF14225 MOR2-PAG1_C: Cell mor 29.7 4.6E+02 0.0099 24.3 16.2 152 198-370 75-240 (262)
475 KOG0915 Uncharacterized conser 29.6 9.9E+02 0.022 28.2 19.7 261 112-388 972-1265(1702)
476 PF04423 Rad50_zn_hook: Rad50 29.5 17 0.00037 24.5 -0.1 13 46-58 21-33 (54)
477 PRK07758 hypothetical protein; 29.3 33 0.00072 26.2 1.4 30 27-66 12-41 (95)
478 PHA00732 hypothetical protein 29.1 66 0.0014 23.7 3.0 36 10-56 2-38 (79)
479 PRK14890 putative Zn-ribbon RN 28.5 38 0.00081 23.4 1.4 9 45-53 48-56 (59)
480 cd01408 SIRT1 SIRT1: Eukaryoti 27.8 56 0.0012 29.7 2.9 31 27-57 122-152 (235)
481 COG5537 IRR1 Cohesin [Cell div 27.7 4.7E+02 0.01 27.4 9.4 133 198-343 288-422 (740)
482 TIGR00117 acnB aconitate hydra 27.5 2.8E+02 0.0061 30.2 8.3 104 93-213 20-125 (844)
483 PF14663 RasGEF_N_2: Rapamycin 27.4 1.1E+02 0.0024 24.2 4.3 39 272-311 9-47 (115)
484 PRK14138 NAD-dependent deacety 26.9 1.1E+02 0.0025 27.8 4.8 32 26-57 124-155 (244)
485 KOG3899 Uncharacterized conser 26.9 40 0.00087 31.3 1.7 28 30-57 328-366 (381)
486 smart00638 LPD_N Lipoprotein N 26.7 7.3E+02 0.016 25.7 16.5 105 186-301 394-509 (574)
487 cd00197 VHS_ENTH_ANTH VHS, ENT 26.6 3.1E+02 0.0067 21.3 7.6 69 98-166 37-111 (115)
488 PF13240 zinc_ribbon_2: zinc-r 26.5 36 0.00078 18.6 0.9 9 45-53 13-21 (23)
489 PF04064 DUF384: Domain of unk 26.5 1.4E+02 0.003 20.6 4.0 46 253-299 1-47 (58)
490 KOG1243 Protein kinase [Genera 26.4 5.5E+02 0.012 27.3 9.8 134 197-344 266-399 (690)
491 PF12397 U3snoRNP10: U3 small 26.3 3.3E+02 0.0071 21.5 10.6 67 186-261 7-76 (121)
492 TIGR00100 hypA hydrogenase nic 25.9 35 0.00076 27.2 1.1 10 45-54 86-95 (115)
493 KOG2034 Vacuolar sorting prote 25.5 32 0.0007 36.9 1.0 34 9-42 817-852 (911)
494 PF09723 Zn-ribbon_8: Zinc rib 25.1 12 0.00027 23.8 -1.4 25 26-53 10-34 (42)
495 smart00638 LPD_N Lipoprotein N 24.7 7.9E+02 0.017 25.4 13.0 172 186-384 358-541 (574)
496 PF13248 zf-ribbon_3: zinc-rib 24.5 32 0.00069 19.3 0.4 10 45-54 16-25 (26)
497 KOG2593 Transcription initiati 24.4 86 0.0019 31.0 3.6 42 5-58 124-166 (436)
498 PRK14714 DNA polymerase II lar 24.2 75 0.0016 35.9 3.5 17 243-259 1091-1107(1337)
499 PF15616 TerY-C: TerY-C metal 24.2 37 0.0008 27.8 0.9 37 11-55 79-115 (131)
500 PF04388 Hamartin: Hamartin pr 24.1 2.4E+02 0.0053 30.0 7.2 101 66-168 38-138 (668)
No 1
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=3.7e-27 Score=258.91 Aligned_cols=281 Identities=16% Similarity=0.191 Sum_probs=241.7
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
+.+.++.|++.|.+++ ..|..|++.|++++..+++++..++++|+||.|+++|.+++. .++++|+|+|.|++.++++
T Consensus 444 ~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~--~iqeeAawAL~NLa~~~~q 521 (2102)
T PLN03200 444 GREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQ--KAKEDSATVLWNLCCHSED 521 (2102)
T ss_pred HcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCcHH
Confidence 3567999999999877 889999999999999989999999999999999999998765 4699999999999998877
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-----------------------------------
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF----------------------------------- 219 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------------- 219 (407)
.+.++...| +++.|+++|++++.+.++.|+++|.+|+...+..
T Consensus 522 ir~iV~~aG--AIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d 599 (2102)
T PLN03200 522 IRACVESAG--AVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLED 599 (2102)
T ss_pred HHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhH
Confidence 778787666 8999999999999999999999999996432211
Q ss_pred --hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH
Q 040073 220 --QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL 296 (407)
Q Consensus 220 --~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L 296 (407)
.......|+++.|+++|+++ +++.++.|+++|.+++.+ ++++..++..|+||+|+.+|..+ +.+++..++++|
T Consensus 600 ~~~~g~~~~ggL~~Lv~LL~sg---s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~-~~~v~keAA~AL 675 (2102)
T PLN03200 600 LVREGSAANDALRTLIQLLSSS---KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN-TEAVATQSARAL 675 (2102)
T ss_pred HHHHhhhccccHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC-ChHHHHHHHHHH
Confidence 00111347899999999999 999999999999999985 45788899999999999999987 788999999999
Q ss_pred HHHhcC--HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH
Q 040073 297 DLLCRC--AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK 374 (407)
Q Consensus 297 ~~L~~~--~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~ 374 (407)
.+|+.+ .+++..++. .|+||+|++++...+....+.|+.+|.+++.+.. .+.++.+.|+|++|+++|++ ++++
T Consensus 676 ~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e---~~~ei~~~~~I~~Lv~lLr~-G~~~ 750 (2102)
T PLN03200 676 AALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE---VAAEALAEDIILPLTRVLRE-GTLE 750 (2102)
T ss_pred HHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch---HHHHHHhcCcHHHHHHHHHh-CChH
Confidence 999963 344556666 6899999998887788999999999999998543 57888889999999999996 4899
Q ss_pred HHHHHHHHHHHHHhh
Q 040073 375 TKERAREILKLNARA 389 (407)
Q Consensus 375 ~k~~A~~lL~~l~~~ 389 (407)
.|+.|+++|..|.+.
T Consensus 751 ~k~~Aa~AL~~L~~~ 765 (2102)
T PLN03200 751 GKRNAARALAQLLKH 765 (2102)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999877764
No 2
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.96 E-value=4.1e-27 Score=258.56 Aligned_cols=283 Identities=16% Similarity=0.158 Sum_probs=238.9
Q ss_pred hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
...+..+++.|.+. . +.+..|+..|+.+++++++||..+.+ .|+||.|+.+|.+++. .++++|+.+|.+|+.++
T Consensus 12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg~~--~vk~nAaaaL~nLS~~e 89 (2102)
T PLN03200 12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTL--GAKVNAAAVLGVLCKEE 89 (2102)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCH
Confidence 56788999999754 4 88999999999999999999999997 9999999999987765 56999999999999886
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC---CchhhhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA---DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKA 249 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~ 249 (407)
+ ++..+...| +++.|+.+|++++.+.|++|+.+|++|+... +++..++...|+||+|+.+++++...+..+++.
T Consensus 90 ~-nk~~Iv~~G--aIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~ 166 (2102)
T PLN03200 90 D-LRVKVLLGG--CIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGL 166 (2102)
T ss_pred H-HHHHHHHcC--ChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHH
Confidence 5 565665555 8999999999999999999999999999874 344466766799999999999861012235677
Q ss_pred HHHHHHHhCCCCchHH-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC
Q 040073 250 ALKLLVELCPWGRNRI-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS 327 (407)
Q Consensus 250 A~~aL~~L~~~~~n~~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s 327 (407)
++.+|+||+...+|+. .++++|+||.|+++|.++ ++..++.|+++|.+++.+ ++++..+++ .|+||.||++|.+++
T Consensus 167 Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~-d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~LL~sg~ 244 (2102)
T PLN03200 167 LTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSG-NSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKLLGQGN 244 (2102)
T ss_pred HHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHHHccCC
Confidence 8899999999988875 458999999999999986 889999999999888865 678888887 689999999876654
Q ss_pred -chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC--------CHHHHHHHHHHHHHHHh
Q 040073 328 -HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA--------SVKTKERAREILKLNAR 388 (407)
Q Consensus 328 -~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--------~~~~k~~A~~lL~~l~~ 388 (407)
...+++|+.+|.+|+.++ .+.+..+++.|+++.|+.++.+.. +...++.|.+.|..+++
T Consensus 245 ~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg 312 (2102)
T PLN03200 245 EVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG 312 (2102)
T ss_pred ChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence 588999999999999854 457999999999999999998432 23458999999999877
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.4e-25 Score=214.35 Aligned_cols=282 Identities=15% Similarity=0.194 Sum_probs=244.5
Q ss_pred ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
..+-|+.++..|...+ ..|.+|+++|.+++..+.+.-..++++|++|.++.+|.+++. .+++.|+|+|+|++.+..
T Consensus 107 ~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~--~v~eQavWALgNIagds~ 184 (514)
T KOG0166|consen 107 QSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSA--DVREQAVWALGNIAGDSP 184 (514)
T ss_pred HcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcH--HHHHHHHHHHhccccCCh
Confidence 3577899999997443 889999999999999999999999999999999999999887 679999999999999999
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCCh-hHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGNY-QSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
..+.++...| +++.|..++..... ....+++|+|.||+........+..-..++|.|..++.+. |.++...|+|
T Consensus 185 ~~Rd~vl~~g--~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~---D~~Vl~Da~W 259 (514)
T KOG0166|consen 185 DCRDYVLSCG--ALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST---DEEVLTDACW 259 (514)
T ss_pred HHHHHHHhhc--chHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Confidence 9999999887 89999999987644 7889999999999988754444444457899999999998 9999999999
Q ss_pred HHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-Cchh
Q 040073 253 LLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAA 330 (407)
Q Consensus 253 aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~ 330 (407)
||.+|+.+.. ....+++.|++|.|+++|... +..++.-|+.++.|++.+.+.+.+.+-+.|++|.|..++.+. ....
T Consensus 260 AlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~i 338 (514)
T KOG0166|consen 260 ALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESI 338 (514)
T ss_pred HHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhH
Confidence 9999997554 555568999999999999986 678888999999999999988888877789999999966643 3457
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
++.|+.++.|++.+ +.+.++.++++|.+|.|+.+|+.. ..++|++|++++..+..
T Consensus 339 kkEAcW~iSNItAG--~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts 393 (514)
T KOG0166|consen 339 KKEACWTISNITAG--NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS 393 (514)
T ss_pred HHHHHHHHHHhhcC--CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence 88899999999985 445699999999999999999964 79999999999987654
No 4
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=8.2e-25 Score=199.94 Aligned_cols=279 Identities=14% Similarity=0.144 Sum_probs=239.6
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
.+.+..+.+.-++.+ -.|.++++.|.++... .+||+.++.+|++|.|++++.+++. ++++.+..+|.+++.+.. .
T Consensus 166 sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpvLVsll~s~d~--dvqyycttaisnIaVd~~-~ 241 (550)
T KOG4224|consen 166 SGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPVLVSLLKSGDL--DVQYYCTTAISNIAVDRR-A 241 (550)
T ss_pred ccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchhhhhhhccCCh--hHHHHHHHHhhhhhhhHH-H
Confidence 344555555333444 7889999999999765 8999999999999999999999887 579999999999998775 4
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
++++.+.+-+.++.||.++.+++..++..|..+|++|++..++...+... |.+|.||++|+++ .-....+...+++
T Consensus 242 Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~a-g~lP~lv~Llqs~---~~plilasVaCIr 317 (550)
T KOG4224|consen 242 RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEA-GSLPLLVELLQSP---MGPLILASVACIR 317 (550)
T ss_pred HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhc-CCchHHHHHHhCc---chhHHHHHHHHHh
Confidence 55555543258999999999999999999999999999999998888874 7899999999987 7777888899999
Q ss_pred HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
|++.++-|...++++|.+.+|+.+|.-+.+.+++-.|..+|++|+. +..++..|.+ .|+||.+..+++++.-..++.-
T Consensus 318 nisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvqsei 396 (550)
T KOG4224|consen 318 NISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQSEI 396 (550)
T ss_pred hcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHHHHH
Confidence 9999999999999999999999999988667799999999999998 5667777777 7899999999999888888887
Q ss_pred HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
-.++..++.... .+....++|.++.|+.+..+. +.+++.+|++.|-.|++
T Consensus 397 sac~a~Lal~d~---~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 397 SACIAQLALNDN---DKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS 446 (550)
T ss_pred HHHHHHHHhccc---cHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence 788888887544 377788899999999998854 89999999999988876
No 5
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.6e-24 Score=197.97 Aligned_cols=275 Identities=16% Similarity=0.180 Sum_probs=229.5
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
.++..|+..+.++. +.|+.++.+|.+++.. ++||..+...|++.+|+++-++.+. . ++.++..+|.+|..+.+ ++
T Consensus 126 ~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLakskdi-r-vqrnatgaLlnmThs~E-nR 201 (550)
T KOG4224|consen 126 LGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSKDI-R-VQRNATGALLNMTHSRE-NR 201 (550)
T ss_pred cChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccchh-h-HHHHHHHHHHHhhhhhh-hh
Confidence 35666776766666 9999999999999998 7899999999999999996555554 2 59999999999997776 55
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh--hHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE--FFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
+.+..+| .+|.||.+|++++.+++..++.+|.+++...-.++.... .| .++.||+++.++ ++.++..|..||
T Consensus 202 r~LV~aG--~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~---s~kvkcqA~lAL 275 (550)
T KOG4224|consen 202 RVLVHAG--GLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDG---SDKVKCQAGLAL 275 (550)
T ss_pred hhhhccC--CchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCC---ChHHHHHHHHHH
Confidence 5566666 599999999999999999999999999866555555544 56 999999999999 999999999999
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhHH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASDR 333 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~ 333 (407)
+||++..+.+..++++|.+|.++++|.+. .....-..+..+.+++.++-+-.-|++ +|.+.+||.+|.-++ ++.|-+
T Consensus 276 rnlasdt~Yq~eiv~ag~lP~lv~Llqs~-~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnEeiqch 353 (550)
T KOG4224|consen 276 RNLASDTEYQREIVEAGSLPLLVELLQSP-MGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNEEIQCH 353 (550)
T ss_pred hhhcccchhhhHHHhcCCchHHHHHHhCc-chhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCchhhhhh
Confidence 99999999999999999999999999875 555566777889999998877766766 789999999776664 669999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
|+.+||+++..+. ..+..+.++|+|++|.+++. +++-..|..-..-+..|+
T Consensus 354 AvstLrnLAasse--~n~~~i~esgAi~kl~eL~l-D~pvsvqseisac~a~La 404 (550)
T KOG4224|consen 354 AVSTLRNLAASSE--HNVSVIRESGAIPKLIELLL-DGPVSVQSEISACIAQLA 404 (550)
T ss_pred HHHHHHHHhhhhh--hhhHHHhhcCchHHHHHHHh-cCChhHHHHHHHHHHHHH
Confidence 9999999998432 24778888999999999998 556777777666665554
No 6
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=4.4e-24 Score=207.41 Aligned_cols=308 Identities=15% Similarity=0.181 Sum_probs=254.9
Q ss_pred HHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh
Q 040073 71 RLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT 149 (407)
Q Consensus 71 ~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~ 149 (407)
+.-..|...|..++.. ..++..++.+.++.+++.+.+++ ..+..|+++|.+++.+++..|+.+.+.|++++|+.++.
T Consensus 127 q~eAAWaLTnIAsgts--e~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~ 204 (514)
T KOG0166|consen 127 QFEAAWALTNIASGTS--EQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLN 204 (514)
T ss_pred HHHHHHHHHHHhcCch--hhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhc
Confidence 4446788887766531 34555678888999999999888 99999999999999999999999999999999999999
Q ss_pred ccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhH
Q 040073 150 KSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF 229 (407)
Q Consensus 150 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i 229 (407)
.... .....++.|+|.|||.+....-.+-.-.. ++|.|..+|.+.+.++...|+|+|.+|+........++...|++
T Consensus 205 ~~~~-~~~lRn~tW~LsNlcrgk~P~P~~~~v~~--iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv 281 (514)
T KOG0166|consen 205 KSDK-LSMLRNATWTLSNLCRGKNPSPPFDVVAP--ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVV 281 (514)
T ss_pred cccc-hHHHHHHHHHHHHHHcCCCCCCcHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccch
Confidence 8765 22489999999999998732222222222 79999999999999999999999999998887777777778999
Q ss_pred HHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHH
Q 040073 230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRA 307 (407)
Q Consensus 230 ~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~ 307 (407)
+.||.+|... +..++..|++++.|+..+.+ ....+++.|++|.|..+|.......++.+|+|++.|++.+.. ..+
T Consensus 282 ~~LV~lL~~~---~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiq 358 (514)
T KOG0166|consen 282 PRLVDLLGHS---SPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQ 358 (514)
T ss_pred HHHHHHHcCC---CcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHH
Confidence 9999999988 88899999999999999666 555568899999999999865355689999999999998655 445
Q ss_pred HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
++++ +|.+|.|+..|..+.-+.++.|+.++.|++.... .+....+++.|+|++|..+|... +.+.-..+...|..+-
T Consensus 359 aVid-a~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~-~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil 435 (514)
T KOG0166|consen 359 AVID-ANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGT-PEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENIL 435 (514)
T ss_pred HHHH-cccHHHHHHHHhccchHHHHHHHHHHHhhcccCC-HHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHH
Confidence 5555 7899999998888888889999999999998754 66889999999999999999643 6666777777777665
Q ss_pred hh
Q 040073 388 RA 389 (407)
Q Consensus 388 ~~ 389 (407)
++
T Consensus 436 ~~ 437 (514)
T KOG0166|consen 436 KV 437 (514)
T ss_pred HH
Confidence 54
No 7
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.91 E-value=2.6e-23 Score=188.63 Aligned_cols=281 Identities=11% Similarity=0.096 Sum_probs=239.5
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHH-hhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSI-TLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l-~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
..++|.+.+.|.+++ +.|..|+-..|.+ +++..-....++++|++|.++.+|+..... ..+.+|+|+|.|++.+..+
T Consensus 70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~-mlqfEAaWalTNiaSGtt~ 148 (526)
T COG5064 70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRD-MLQFEAAWALTNIASGTTQ 148 (526)
T ss_pred hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchh-HHHHHHHHHHhhhccCccc
Confidence 347899999999998 9999999999885 555555677889999999999999755442 3588999999999999887
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
..+++.+.| ++|.++++|.+++.++++.++|+|.|++.+.+.++..+...|++.+|+.++.+. ..+..+.+++.|+|
T Consensus 149 QTkvVvd~~--AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss-~~~ismlRn~TWtL 225 (526)
T COG5064 149 QTKVVVDAG--AVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSS-AIHISMLRNATWTL 225 (526)
T ss_pred ceEEEEeCC--chHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhc-cchHHHHHHhHHHH
Confidence 888888887 899999999999999999999999999999999888888889999999998754 13458999999999
Q ss_pred HHhCCCC---chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073 255 VELCPWG---RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS 331 (407)
Q Consensus 255 ~~L~~~~---~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~ 331 (407)
.|||... ++...+.. ++|.|.+++-.. ++++...|+|++..|+..+..+..++-+.|..+.||.+|.+.+...+
T Consensus 226 SNlcRGknP~P~w~~isq--alpiL~KLiys~-D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iq 302 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQ--ALPILAKLIYSR-DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQ 302 (526)
T ss_pred HHhhCCCCCCCchHHHHH--HHHHHHHHHhhc-CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCcccccc
Confidence 9999843 35555444 599999999887 89999999999999999888888777767888899998888888899
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 332 DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 332 e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
..|++...++..++.. ..+.+++.|+++.+..+|.+. .+..|+.|.+.+..+-
T Consensus 303 tPalR~vGNIVTG~D~--QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNIT 355 (526)
T COG5064 303 TPALRSVGNIVTGSDD--QTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNIT 355 (526)
T ss_pred CHHHHhhcCeeecCcc--ceehheecccHHHHHHHhcCh-hhhhhhhhheeecccc
Confidence 9999999999987654 467788999999999998754 6789999988887653
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.90 E-value=1.2e-22 Score=184.45 Aligned_cols=307 Identities=13% Similarity=0.110 Sum_probs=248.6
Q ss_pred HHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHH
Q 040073 69 LRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATI 147 (407)
Q Consensus 69 l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l 147 (407)
|-+.-..|...|..+|.+ ..++..+|.+.+|.+++.|.++. +++..++++|.+++.+++..|+.+.+.|++++|+.+
T Consensus 130 mlqfEAaWalTNiaSGtt--~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~l 207 (526)
T COG5064 130 MLQFEAAWALTNIASGTT--QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGL 207 (526)
T ss_pred HHHHHHHHHHhhhccCcc--cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHH
Confidence 445557788888877642 24455678999999999999887 999999999999999999999999999999999999
Q ss_pred hhccCCCCchHHHHHHHHHhcCCChhH--HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch
Q 040073 148 ITKSDAGSDECDEALSILYHLNVSESY--LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK 225 (407)
Q Consensus 148 L~~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 225 (407)
|.+.........++.|.|.|||.+..- ....+.. ++|.|.+++.+-++++...|+|+|.+|+..+..+..+...
T Consensus 208 l~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq----alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld 283 (526)
T COG5064 208 LLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ----ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLD 283 (526)
T ss_pred HHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH----HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHh
Confidence 986654323489999999999986522 2333432 6999999999999999999999999999888777777777
Q ss_pred hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh
Q 040073 226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE 304 (407)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~ 304 (407)
.|..+.||++|.++ +..++.-|++.+.|+....+ ....+++.|+++.+..+|.+. ...++.+|+|++.++.....
T Consensus 284 ~g~~~RLvElLs~~---sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnt 359 (526)
T COG5064 284 VGIPGRLVELLSHE---SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNT 359 (526)
T ss_pred cCCcHHHHHHhcCc---cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCH
Confidence 89999999999998 88999999999999998654 556678999999999999886 67999999999999988655
Q ss_pred hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc-hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 305 GRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT-ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 305 ~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.+.+.+-++..+|+|+.+|....-..++.|+.++.+.+++..+ .......++.|+|.+|..+|... +.+.-+.|-..+
T Consensus 360 eqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~ 438 (526)
T COG5064 360 EQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAI 438 (526)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHH
Confidence 5444444478999999988776667777788888888776533 35688889999999999999754 444555554444
Q ss_pred HHH
Q 040073 384 KLN 386 (407)
Q Consensus 384 ~~l 386 (407)
+.+
T Consensus 439 eni 441 (526)
T COG5064 439 ENI 441 (526)
T ss_pred HHH
Confidence 433
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=99.89 E-value=1.4e-23 Score=154.61 Aligned_cols=72 Identities=47% Similarity=0.907 Sum_probs=62.1
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+|++|+||||+++|+|||++++||||||++|++|+.. ++.+||.|+++++.. +++||..||+.|++|+.+|.
T Consensus 1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~-~~~~~P~t~~~l~~~---~l~pn~~Lk~~I~~~~~~~~ 72 (73)
T PF04564_consen 1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ-NGGTDPFTRQPLSES---DLIPNRALKSAIEEWCAENK 72 (73)
T ss_dssp SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT-TSSB-TTT-SB-SGG---GSEE-HHHHHHHHHHHHHCT
T ss_pred CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc-CCCCCCCCCCcCCcc---cceECHHHHHHHHHHHHHcc
Confidence 7999999999999999999999999999999999987 488999999999885 89999999999999999875
No 10
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.75 E-value=9e-19 Score=125.97 Aligned_cols=63 Identities=49% Similarity=0.928 Sum_probs=59.0
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~ 76 (407)
+|.||||+++|+|||+++|||+|||.||.+|+.+ +.+||.|+++++.+ ++++|..+++.|++|
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~--~~~cP~~~~~~~~~---~l~~~~~l~~~i~~~ 63 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS--HGTDPVTGQPLTHE---DLIPNLALKSAIQEW 63 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH--CCCCCCCcCCCChh---hceeCHHHHHHHHhC
Confidence 5899999999999999999999999999999976 67899999999774 899999999999988
No 11
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.75 E-value=4.5e-16 Score=159.62 Aligned_cols=254 Identities=18% Similarity=0.221 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHH
Q 040073 114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRV 193 (407)
Q Consensus 114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~l 193 (407)
.+.++..|.+++.+ ..+...+++.|+|+.|+++|++.+. .+...++..|..|+...+ ++..+.+.| +++.|+++
T Consensus 266 lrv~~~lLlNLAed-~~ve~kM~~~~iV~~Lv~~Ldr~n~--ellil~v~fLkkLSi~~E-NK~~m~~~g--iV~kL~kL 339 (708)
T PF05804_consen 266 LRVAFYLLLNLAED-PRVELKMVNKGIVSLLVKCLDRENE--ELLILAVTFLKKLSIFKE-NKDEMAESG--IVEKLLKL 339 (708)
T ss_pred HHHHHHHHHHHhcC-hHHHHHHHhcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHcC--CHHHHHHH
Confidence 34566778888876 7899999999999999999987754 468889999999999886 577777766 89999999
Q ss_pred HhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCch
Q 040073 194 LKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGV 273 (407)
Q Consensus 194 L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v 273 (407)
+.+++.+....+.++|.|||.+.+.+..+.. .|++|.|+.+|.++ ..+..++..|++||..+++|..+...+++
T Consensus 340 l~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~-~GlIPkLv~LL~d~-----~~~~val~iLy~LS~dd~~r~~f~~TdcI 413 (708)
T PF05804_consen 340 LPSENEDLVNVALRLLFNLSFDPELRSQMVS-LGLIPKLVELLKDP-----NFREVALKILYNLSMDDEARSMFAYTDCI 413 (708)
T ss_pred hcCCCHHHHHHHHHHHHHhCcCHHHHHHHHH-CCCcHHHHHHhCCC-----chHHHHHHHHHHhccCHhhHHHHhhcchH
Confidence 9999999999999999999988877776665 69999999999765 35567999999999999999999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHH
Q 040073 274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQE 353 (407)
Q Consensus 274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~ 353 (407)
|.|+++|..+++..+...+++++.||+.+..+.+.+.+ ++|++.|++...+..+ ..-++++.|++.+++. .+.
T Consensus 414 p~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~-g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~---~k~ 486 (708)
T PF05804_consen 414 PQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCE-GNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP---LKE 486 (708)
T ss_pred HHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHh-cCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch---HHH
Confidence 99999988765666777889999999999999888887 6889999997766433 3345799999998743 222
Q ss_pred HHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 354 MLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 354 ~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
+. .+.+..|+.++....++...-.+-.+|.+|.
T Consensus 487 ~f-~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 487 LF-VDFIGDLAKIVSSGDSEEFVVECLGILANLT 519 (708)
T ss_pred HH-HHHHHHHHHHhhcCCcHHHHHHHHHHHHhcc
Confidence 22 3688899999886556665555555555543
No 12
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.74 E-value=1.2e-15 Score=156.50 Aligned_cols=276 Identities=16% Similarity=0.205 Sum_probs=215.7
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
.+.|+.|++.|.+.+ +....++..|.+++-. .+||..|.+.|+|+.|++++.+.+. ..+..++.+|+||+.+.+ .
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~--~l~~~aLrlL~NLSfd~~-~ 364 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENE--DLVNVALRLLFNLSFDPE-L 364 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCH--HHHHHHHHHHHHhCcCHH-H
Confidence 455777888888777 7888899999999987 7899999999999999999997765 469999999999999886 4
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
+..+...| .+|.|+.+|.++ ..+..+..+|.+||..++.+..+.. .++++.|++++-.+ .+..+...++.++.
T Consensus 365 R~~mV~~G--lIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~--~~~~v~~eliaL~i 437 (708)
T PF05804_consen 365 RSQMVSLG--LIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLEN--SEEEVQLELIALLI 437 (708)
T ss_pred HHHHHHCC--CcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhC--CCccccHHHHHHHH
Confidence 66666666 899999999754 4667899999999988777666655 57899999987654 25666777888889
Q ss_pred HhCCCCchHHHHHhcCchHHHHHHhh-------------------------------------cccchhHHHHHHHHHHH
Q 040073 256 ELCPWGRNRIKAVEGGGVSVLVDLLL-------------------------------------DVTERRVCELMLNVLDL 298 (407)
Q Consensus 256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~-------------------------------------~~~~~~~~~~al~~L~~ 298 (407)
||+.++.|...+.+.|+++.|++... .+.+.+..-+++++|.|
T Consensus 438 NLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaN 517 (708)
T PF05804_consen 438 NLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILAN 517 (708)
T ss_pred HHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHh
Confidence 99999888888888788887765322 22256778899999999
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC--CHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA--SVK 374 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~--~~~ 374 (407)
|...+.....++...+.+|.+.+.|..+. +...-.++.++..++. +..+...+.+.|.++.|+.+|.+.. ++-
T Consensus 518 L~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~---d~~~A~lL~~sgli~~Li~LL~~kqeDdE~ 594 (708)
T PF05804_consen 518 LTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS---DPECAPLLAKSGLIPTLIELLNAKQEDDEI 594 (708)
T ss_pred cccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC---CHHHHHHHHhCChHHHHHHHHHhhCchHHH
Confidence 99877778888876788999999776553 4566667788888885 5567888889999999999998642 334
Q ss_pred HHHHHHHHHHHH
Q 040073 375 TKERAREILKLN 386 (407)
Q Consensus 375 ~k~~A~~lL~~l 386 (407)
+-+-...+.+++
T Consensus 595 VlQil~~f~~ll 606 (708)
T PF05804_consen 595 VLQILYVFYQLL 606 (708)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 13
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=3.4e-15 Score=136.02 Aligned_cols=270 Identities=14% Similarity=0.194 Sum_probs=222.1
Q ss_pred CCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhH
Q 040073 109 KSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFL 187 (407)
Q Consensus 109 ~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i 187 (407)
+++ ..-.+++..|..+....|+ +++.-+...++.+|....++.++....+..+..-|..++.+++.+.+.+ ++
T Consensus 118 ~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~--il 191 (461)
T KOG4199|consen 118 SPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELK--IL 191 (461)
T ss_pred CCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhh--HH
Confidence 444 5667888888888766554 5667778999999987766555677777777777777778888888876 88
Q ss_pred HHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhh---------chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 188 ESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLIS---------VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 188 ~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~---------~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
+.+...|.. |...+...+.++++.|...++.+..++ ...|+...|++.++.+ .+|.+...+..+|..|
T Consensus 192 ~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~--~dp~~L~~l~~tl~~l 269 (461)
T KOG4199|consen 192 ELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAG--IDPDSLVSLSTTLKAL 269 (461)
T ss_pred HHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHcc--CCccHHHHHHHHHHHH
Confidence 888877765 555688889999999987776554332 2245688999999987 6899999999999999
Q ss_pred CCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC--CchhhH
Q 040073 258 CPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV--SHAASD 332 (407)
Q Consensus 258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e 332 (407)
+..++-++.+++.|++..|++++.+.. .+.....++++|..|+.+++.|..|++ .||.+.++.++.+. ++..-+
T Consensus 270 AVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii~l~~~h~~~p~Vi~ 348 (461)
T KOG4199|consen 270 AVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKIITLALRHSDDPLVIQ 348 (461)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHHHHHHHcCCChHHHH
Confidence 999999999999999999999998843 345668999999999999999999999 68999999988775 478888
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA-SVKTKERAREILKLNARA 389 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~l~~~ 389 (407)
.++.++..+|-..+++ ...+++.|+-...+..|+.++ -..++++|.++++++...
T Consensus 349 ~~~a~i~~l~LR~pdh--sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r 404 (461)
T KOG4199|consen 349 EVMAIISILCLRSPDH--SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR 404 (461)
T ss_pred HHHHHHHHHHhcCcch--HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh
Confidence 8999999999998885 677889999999999998775 567889999999999764
No 14
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.67 E-value=4.8e-15 Score=154.90 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=215.4
Q ss_pred HHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC----------CCchHHHHHHHHHhcCCChhHHHhHhhccchh
Q 040073 116 KCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA----------GSDECDEALSILYHLNVSESYLKSIVINNGEE 185 (407)
Q Consensus 116 ~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~----------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~ 185 (407)
.|+..|-+++.+ +++|..+-+.|++..+.+||.-+.. ...++..|.++|.||..++..+|..+....|
T Consensus 317 aA~~~lMK~SFD-EEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg- 394 (2195)
T KOG2122|consen 317 AALCTLMKLSFD-EEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG- 394 (2195)
T ss_pred HHHHHHHHhhcc-HHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh-
Confidence 667777777765 8999999999999999998853211 1246889999999999999999988887665
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHH-cccCCCCCHHHHHHHHHHHHHhCCC-Cc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNV-LRDHHQFSQQASKAALKLLVELCPW-GR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~L~~~-~~ 262 (407)
+|+.+|..|.+...++.+-.+.+|+||+=. +.+.+.+....|-+..|+.. |++. .....++.+.|||||+.+ .+
T Consensus 395 fMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~---kEsTLKavLSALWNLSAHcte 471 (2195)
T KOG2122|consen 395 FMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK---KESTLKAVLSALWNLSAHCTE 471 (2195)
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc---ccchHHHHHHHHhhhhhcccc
Confidence 999999999999999999999999999854 45667777888989999875 5555 667889999999999995 57
Q ss_pred hHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHh----cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 263 NRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLC----RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 263 n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~----~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
||..|.. -|++..|+.+|.-.. .-.+.|.+-++|.|++ .+.++|+.+.++ ..+..|++.|...+-...-++
T Consensus 472 NKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSNa 550 (2195)
T KOG2122|consen 472 NKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSNA 550 (2195)
T ss_pred cchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeecc
Confidence 9999877 699999999996531 3467889999998764 467778777774 689999998888888889999
Q ss_pred HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
+++||||...+.. .++.+.+.|+++.|..++++...+.+.--|+.|..+|+
T Consensus 551 CGTLWNLSAR~p~--DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln 601 (2195)
T KOG2122|consen 551 CGTLWNLSARSPE--DQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN 601 (2195)
T ss_pred hhhhhhhhcCCHH--HHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence 9999999987654 47777789999999999998766666666666666654
No 15
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2e-13 Score=124.55 Aligned_cols=282 Identities=16% Similarity=0.200 Sum_probs=218.8
Q ss_pred ChhhHHHHHHHhc--CCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 96 DKTQIVKILNDAK--KSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 96 ~~~~i~~ll~~L~--~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
|..+..-++..|. .++ +.....+..++.-+..++.||..+.+.|+.+.+...|....... ...++.++++.|..++
T Consensus 143 da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~-~VRel~~a~r~l~~dD 221 (461)
T KOG4199|consen 143 DAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREGKTR-TVRELYDAIRALLTDD 221 (461)
T ss_pred ccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccCccH-HHHHHHHHHHHhcCCC
Confidence 4455555555553 333 66777888999988888999999999999999998887665533 4777888888887665
Q ss_pred h---------HHHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC-CC
Q 040073 173 S---------YLKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH-HQ 241 (407)
Q Consensus 173 ~---------~~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~ 241 (407)
+ +..+.+...| .+..|++.|+.+ ++++...+..+|..|+..+|.++.+... |++..|++++.+. +.
T Consensus 222 DiRV~fg~ah~hAr~ia~e~--~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~-GGl~tl~~~i~d~n~~ 298 (461)
T KOG4199|consen 222 DIRVVFGQAHGHARTIAKEG--ILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAES-GGLDTLLRCIDDSNEQ 298 (461)
T ss_pred ceeeecchhhHHHHHHHHhh--hHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHc-cCHHHHHHHHhhhchh
Confidence 3 2334454444 488999999875 7889999999999999999999999886 6799999999873 00
Q ss_pred CCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHH
Q 040073 242 FSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVV 319 (407)
Q Consensus 242 ~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~L 319 (407)
.+.+..+.++..|+.|+.+++++..||+.|+.+.++.++... +++.+.+.++.++..||- .+++-..+++ +|+-...
T Consensus 299 ~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~a~~a 377 (461)
T KOG4199|consen 299 GNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGAADLA 377 (461)
T ss_pred hHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cchHHHH
Confidence 133567888999999999999999999999999999998664 378899999999999886 6777777887 6777788
Q ss_pred HHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 320 SKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 320 v~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
|+.|...- ...+.+|+..+.|+..++.+ .+...+. .|+++|+..-.++ .+..+..|...|+-|
T Consensus 378 vqAmkahP~~a~vQrnac~~IRNiv~rs~~--~~~~~l~-~GiE~Li~~A~~~-h~tce~~akaALRDL 442 (461)
T KOG4199|consen 378 VQAMKAHPVAAQVQRNACNMIRNIVVRSAE--NRTILLA-NGIEKLIRTAKAN-HETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHhhhh--ccchHHh-ccHHHHHHHHHhc-CccHHHHHHHHHHhc
Confidence 88887753 45699999999999997665 3555555 5588998877654 455566666677755
No 16
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.58 E-value=8.7e-14 Score=140.06 Aligned_cols=286 Identities=13% Similarity=0.096 Sum_probs=218.9
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY- 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~- 174 (407)
.-.+++.++.|.+.+ ..|..|..-|..++..+...|..+.+.|+|+.||.+|.+... .++.+|.++|.||..++.+
T Consensus 232 d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~--evq~~acgaLRNLvf~~~~~ 309 (717)
T KOG1048|consen 232 DPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRND--EVQRQACGALRNLVFGKSTD 309 (717)
T ss_pred ccccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcH--HHHHHHHHHHHhhhcccCCc
Confidence 345778888998777 888899999999999999999999999999999999998877 5799999999999987765
Q ss_pred -HHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC------CCC----
Q 040073 175 -LKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH------HQF---- 242 (407)
Q Consensus 175 -~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~---- 242 (407)
++-.|.+.+| |+.++++|+. ++.++++..+.+|+||++.+.-+..+.. .++..|-+-+-.+ ++.
T Consensus 310 ~NKlai~~~~G--v~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 310 SNKLAIKELNG--VPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred ccchhhhhcCC--hHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccccc
Confidence 7777777774 9999999987 7999999999999999988666655554 3577777654321 111
Q ss_pred -CHHHHHHHHHHHHHhCC-CCchHHHHHh-cCchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHh----------
Q 040073 243 -SQQASKAALKLLVELCP-WGRNRIKAVE-GGGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAE---------- 304 (407)
Q Consensus 243 -~~~~~~~A~~aL~~L~~-~~~n~~~~v~-~G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~---------- 304 (407)
+.++..++..+|+|+++ ..+.|.+|.+ .|.|..|+..+..- .+...+|+|+.+|.||+-.-+
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~ 465 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV 465 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence 25788999999999999 6779999987 69999999988742 256788999999999964211
Q ss_pred ----------------------hHHHHHh------------ccCch-----HHHHHH----HH-cCCchhhHHHHHHHHH
Q 040073 305 ----------------------GRAELLK------------HGAGL-----AVVSKK----IL-RVSHAASDRAVRILCS 340 (407)
Q Consensus 305 ----------------------~r~~i~~------------~~g~i-----~~Lv~~----l~-~~s~~~~e~a~~~L~~ 340 (407)
-+.+.-+ ...|+ |.+|+. |. ...+...|.++.+|-+
T Consensus 466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN 545 (717)
T KOG1048|consen 466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN 545 (717)
T ss_pred hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence 0001000 01011 223332 22 1247789999999999
Q ss_pred HhccCC--chHHHHHH-HHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 341 VCKFSA--TARVLQEM-LQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 341 l~~~~~--~~~~~~~~-~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
++-... ...++..+ .+..++++|+++|+.+ ++.+.+.++.+|+.|++.
T Consensus 546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d 596 (717)
T KOG1048|consen 546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD 596 (717)
T ss_pred hhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC
Confidence 998654 23355555 5678899999999965 788888899999999874
No 17
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.57 E-value=5e-13 Score=122.25 Aligned_cols=195 Identities=14% Similarity=0.219 Sum_probs=166.2
Q ss_pred CChhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 95 VDKTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
++++.++.|+..|+.. + ..+..++..+.+.+.. +.+++.+.+.|+++.+.++|.+++. .+++.|+++|.|++.+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~--~vr~~AL~aL~Nls~~~ 85 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNP--SVREKALNALNNLSVND 85 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCCh--HHHHHHHHHHHhcCCCh
Confidence 6788999999999854 3 7889999999998775 8999999999999999999999876 56999999999999887
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA 250 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A 250 (407)
+ ++..+.. .++.+.+...+. +.+.+..+.++|.+|+..++....+. +.++.|+.+|..| +..++..+
T Consensus 86 e-n~~~Ik~----~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G---~~~~k~~v 154 (254)
T PF04826_consen 86 E-NQEQIKM----YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSG---SEKTKVQV 154 (254)
T ss_pred h-hHHHHHH----HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcC---ChHHHHHH
Confidence 6 4555542 577787766554 67888999999999987766655543 4699999999998 99999999
Q ss_pred HHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 251 LKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 251 ~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
+++|.||+.++.+...++.++++..++.++....+.++...++....+|..+-
T Consensus 155 Lk~L~nLS~np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~ 207 (254)
T PF04826_consen 155 LKVLVNLSENPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI 207 (254)
T ss_pred HHHHHHhccCHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999988656788899999999997643
No 18
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.52 E-value=3.2e-12 Score=128.94 Aligned_cols=284 Identities=13% Similarity=0.136 Sum_probs=209.1
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChh--HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSER--NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE- 172 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~- 172 (407)
-++|+.|+..+.++. ++|..|..+|++|.-.+.. |+-.|.+.++|+.++++|+...+. ++++.+..+|+||+..+
T Consensus 274 lggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~-ev~e~iTg~LWNLSS~D~ 352 (717)
T KOG1048|consen 274 LGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQDD-EVRELITGILWNLSSNDA 352 (717)
T ss_pred hccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhcch-HHHHHHHHHHhcccchhH
Confidence 457899999998888 9999999999999876544 999999999999999999964321 23555555555554442
Q ss_pred -----------------------------------------------------hHHHhHhhccchhhHHHHHHHHhc---
Q 040073 173 -----------------------------------------------------SYLKSIVINNGEEFLESLMRVLKC--- 196 (407)
Q Consensus 173 -----------------------------------------------------~~~~~~i~~~gg~~i~~Lv~lL~~--- 196 (407)
++.++.+.+..| .|..|+..+++
T Consensus 353 lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~G-LIdaL~~~iq~~i~ 431 (717)
T KOG1048|consen 353 LKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDG-LIDALLFSIQTAIQ 431 (717)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccc-hHHHHHHHHHHHHH
Confidence 233444444443 78888877763
Q ss_pred ---CChhHHHHHHHHHHHhhccCC-------------------------c-------hhh--------------h-----
Q 040073 197 ---GNYQSRSYAIMLLKSIFEVAD-------------------------P-------FQL--------------I----- 222 (407)
Q Consensus 197 ---~~~~~~~~a~~~L~~Ls~~~~-------------------------~-------~~~--------------i----- 222 (407)
-+....++++-+|+||+..-+ . ++. .
T Consensus 432 ~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~ 511 (717)
T KOG1048|consen 432 KSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGS 511 (717)
T ss_pred hccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCc
Confidence 355667999999999974322 0 000 0
Q ss_pred --hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-----hHHHH-HhcCchHHHHHHhhcccchhHHHHHHH
Q 040073 223 --SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-----NRIKA-VEGGGVSVLVDLLLDVTERRVCELMLN 294 (407)
Q Consensus 223 --~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-----n~~~~-v~~G~v~~Lv~lL~~~~~~~~~~~al~ 294 (407)
.-...+|.+=..+|... .++...++++.||-||+.... .+..+ ..+.+.|.|+++|..+ +..++..+++
T Consensus 512 e~Lw~p~vVr~Yl~Ll~~s--~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~ 588 (717)
T KOG1048|consen 512 EWLWHPSVVRPYLLLLALS--KNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAG 588 (717)
T ss_pred eeeecHHHHHHHHHHHHHh--cchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHH
Confidence 00112333334444433 378899999999999998543 34444 5678899999999997 8899999999
Q ss_pred HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC------chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh
Q 040073 295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS------HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ 368 (407)
Q Consensus 295 ~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s------~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~ 368 (407)
+|.||+.+..+|..|.. .+|+-||..|-... ....-.++.+|+++...+. +....+.+.+++++|+.+..
T Consensus 589 ~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~--~nAkdl~~~~g~~kL~~I~~ 664 (717)
T KOG1048|consen 589 ALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNV--LNAKDLLEIKGIPKLRLISK 664 (717)
T ss_pred HHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhH--HHHHHHHhccChHHHHHHhc
Confidence 99999999999987764 68999999775542 4556677888999986433 35788889999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHHhh
Q 040073 369 VDASVKTKERAREILKLNARA 389 (407)
Q Consensus 369 ~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+.-+++.-+.|..+|..|-.+
T Consensus 665 s~~S~k~~kaAs~vL~~lW~y 685 (717)
T KOG1048|consen 665 SQHSPKEFKAASSVLDVLWQY 685 (717)
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 877999999999998776543
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.52 E-value=1.6e-12 Score=118.92 Aligned_cols=199 Identities=14% Similarity=0.100 Sum_probs=170.2
Q ss_pred hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073 186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~ 264 (407)
-++.|+.+|+. .++.+++.+..++.+.+..+.+...+.. .|+++.+..+|.++ ++.++..|+.+|.||+.+.+|+
T Consensus 13 ~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p---~~~vr~~AL~aL~Nls~~~en~ 88 (254)
T PF04826_consen 13 ELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDP---NPSVREKALNALNNLSVNDENQ 88 (254)
T ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCC---ChHHHHHHHHHHHhcCCChhhH
Confidence 58999999996 5899999999999999877766555555 68899999999998 9999999999999999999999
Q ss_pred HHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 265 IKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
..+-. .++.+.+.+.+.+ +..++..++.+|.+|+..++++..+.. .++.++.++..++...+.+++++|++|+.
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~---~i~~ll~LL~~G~~~~k~~vLk~L~nLS~ 163 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN---YIPDLLSLLSSGSEKTKVQVLKVLVNLSE 163 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh---hHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence 88644 5788887766543 678889999999999998887766643 69999999999999999999999999996
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCC
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCV 396 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~~~ 396 (407)
+.....+++.++++..++.+++.+.+...-..+-.+...+.++++...-+
T Consensus 164 ---np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~ 213 (254)
T PF04826_consen 164 ---NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYV 213 (254)
T ss_pred ---CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccce
Confidence 45578999999999999999997777888899999999998888766443
No 20
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.49 E-value=1.3e-14 Score=94.02 Aligned_cols=40 Identities=35% Similarity=0.699 Sum_probs=31.7
Q ss_pred CccccccCcCceecCCcccccHHHHHHHHhcCCC--CCCccc
Q 040073 12 CPISLQLMRDPVTVSTGITYDRVNIERWLFTCKN--NTCPVT 51 (407)
Q Consensus 12 Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~--~~cP~~ 51 (407)
||||+++|+|||+++|||+||++||++||++.+. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 8999999999999999999999999999986422 579986
No 21
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.38 E-value=6.2e-10 Score=112.75 Aligned_cols=284 Identities=18% Similarity=0.172 Sum_probs=220.8
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
+...+.+..-|.+++ ..|.-+++.|.+++.++......+.+.+.++.++.+|.+++. .+...|+.+|..++.+....
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~--~Va~~A~~~L~~l~~~~~~~ 153 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL--SVAKAAIKALKKLASHPEGL 153 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH--HHHHHHHHHHHHHhCCchhH
Confidence 344456666677777 888899999999998877777888889999999999998876 46899999999999887655
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
..++ ..+ .+..|..++...+..+|.++..++.+++...+.....+...|+++.+++.|.++ |.=++.+++..|.
T Consensus 154 ~~l~-~~~--~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d---DiLvqlnalell~ 227 (503)
T PF10508_consen 154 EQLF-DSN--LLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD---DILVQLNALELLS 227 (503)
T ss_pred HHHh-Ccc--hHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc---cHHHHHHHHHHHH
Confidence 5444 344 589999999888889999999999999988877777777779999999999987 8999999999999
Q ss_pred HhCCCCchHHHHHhcCchHHHHHHhhcc----------------------------------------------cchhHH
Q 040073 256 ELCPWGRNRIKAVEGGGVSVLVDLLLDV----------------------------------------------TERRVC 289 (407)
Q Consensus 256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~----------------------------------------------~~~~~~ 289 (407)
.|+..+.+..-+.+.|+++.|..++.+. .+...+
T Consensus 228 ~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 228 ELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred HHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 9999888999999999999999876531 134566
Q ss_pred HHHHHHHHHHhcCHhhHHHH-HhccCchHHHHHHHHcC----CchhhHHHHHHHHHHhccCCc---h---HHHHHHH---
Q 040073 290 ELMLNVLDLLCRCAEGRAEL-LKHGAGLAVVSKKILRV----SHAASDRAVRILCSVCKFSAT---A---RVLQEML--- 355 (407)
Q Consensus 290 ~~al~~L~~L~~~~~~r~~i-~~~~g~i~~Lv~~l~~~----s~~~~e~a~~~L~~l~~~~~~---~---~~~~~~~--- 355 (407)
..|+.+|..++.+.+|+..+ ...+..+...++.+... +...+..++.+|.++-....+ + .+.....
T Consensus 308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~ 387 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESL 387 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHh
Confidence 78889999999999999988 55455566666655442 356788999999999543322 1 1122222
Q ss_pred HhChHH-HHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 356 QVGVVS-KLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 356 ~~g~i~-~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
..+... .++.+++ .+=+..|-.|-.+|+.+..+
T Consensus 388 ~~~~~~~~l~~~~~-qPF~elr~a~~~~l~~l~~~ 421 (503)
T PF10508_consen 388 SGSPLSNLLMSLLK-QPFPELRCAAYRLLQALAAQ 421 (503)
T ss_pred cCCchHHHHHHHhc-CCchHHHHHHHHHHHHHhcC
Confidence 223444 5566666 33589999999999988774
No 22
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=99.30 E-value=2.7e-11 Score=127.57 Aligned_cols=229 Identities=14% Similarity=0.103 Sum_probs=184.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-ChhHHHhHhhccchhhHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNV-SESYLKSIVINNGEEFLES 189 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~~~~~~i~~~gg~~i~~ 189 (407)
..|.+|+++|-+|...+..||..+-. -|+++.+|..|.+..+ ++....+.+|.||+= .+.+.++++.+.| .+..
T Consensus 366 aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pe--eL~QV~AsvLRNLSWRAD~nmKkvLrE~G--sVta 441 (2195)
T KOG2122|consen 366 ALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPE--ELLQVYASVLRNLSWRADSNMKKVLRETG--SVTA 441 (2195)
T ss_pred HHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChH--HHHHHHHHHHHhccccccccHHHHHHhhh--hHHH
Confidence 56788999999999888888877775 8999999999987765 456777789999864 3445588888877 4555
Q ss_pred HH-HHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCC----CCc
Q 040073 190 LM-RVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCP----WGR 262 (407)
Q Consensus 190 Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~----~~~ 262 (407)
|+ ..|...+.........+|+||+.+. +|+..|+.-.|++.+||.+|.-+++ ....+.+.|-..|+|.++ .++
T Consensus 442 La~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~ 521 (2195)
T KOG2122|consen 442 LAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCED 521 (2195)
T ss_pred HHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccch
Confidence 55 5566667677888999999999875 6788888888999999999974311 145789999999999776 466
Q ss_pred hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073 263 NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV 341 (407)
Q Consensus 263 n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l 341 (407)
.|..+.+.+.+..|++.|++. +-.++.+++++||||.. +++.++.+++ .|+|+.|-.+|........+.++.+|.|+
T Consensus 522 yRQILR~~NCLq~LLQ~LKS~-SLTiVSNaCGTLWNLSAR~p~DQq~LwD-~gAv~mLrnLIhSKhkMIa~GSaaALrNL 599 (2195)
T KOG2122|consen 522 YRQILRRHNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARSPEDQQMLWD-DGAVPMLRNLIHSKHKMIAMGSAAALRNL 599 (2195)
T ss_pred HHHHHHHhhHHHHHHHHhhhc-ceEEeecchhhhhhhhcCCHHHHHHHHh-cccHHHHHHHHhhhhhhhhhhHHHHHHHH
Confidence 888888999999999999997 77889999999999976 6777888887 57899998877766677788888999999
Q ss_pred hccCC
Q 040073 342 CKFSA 346 (407)
Q Consensus 342 ~~~~~ 346 (407)
..+.+
T Consensus 600 ln~RP 604 (2195)
T KOG2122|consen 600 LNFRP 604 (2195)
T ss_pred hcCCc
Confidence 87653
No 23
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.28 E-value=2.1e-12 Score=110.55 Aligned_cols=61 Identities=28% Similarity=0.553 Sum_probs=51.4
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC--------------CCCCCccccccccccCCCCCCccH
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC--------------KNNTCPVTKQVLQETDLTSTTPNH 67 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~--------------~~~~cP~~~~~~~~~~~~~l~~n~ 67 (407)
++..++|.||||.+.++|||+++|||.||+.||.+|+... +...||.|+..++.. .++|.+
T Consensus 13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~---~LvPiy 87 (193)
T PLN03208 13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA---TLVPIY 87 (193)
T ss_pred ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh---cEEEee
Confidence 4567789999999999999999999999999999998521 246899999999774 777764
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.27 E-value=4.1e-12 Score=121.82 Aligned_cols=71 Identities=20% Similarity=0.370 Sum_probs=62.6
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN 80 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~ 80 (407)
.+...|.||||.++|.+||+++|||+||+.||.+|+.. ...||.|+.++... .+.+|..|.++|+.|....
T Consensus 22 ~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~--~~~CP~Cr~~~~~~---~Lr~N~~L~~iVe~~~~~R 92 (397)
T TIGR00599 22 PLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN--QPKCPLCRAEDQES---KLRSNWLVSEIVESFKNLR 92 (397)
T ss_pred ccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC--CCCCCCCCCccccc---cCccchHHHHHHHHHHHhh
Confidence 35677999999999999999999999999999999975 55899999998764 7899999999999996543
No 25
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.25 E-value=1e-10 Score=94.72 Aligned_cols=114 Identities=19% Similarity=0.235 Sum_probs=100.8
Q ss_pred hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 225 KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 225 ~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
..|+++.|+++|.++ +...+..++.+|.+++.. ++.+..+++.|+++.++++|.+. +..++..++++|.+|+...
T Consensus 5 ~~~~i~~l~~~l~~~---~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 5 QAGGLPALVSLLSSS---DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP 80 (120)
T ss_pred HcCChHHHHHHHHcC---CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence 357899999999988 899999999999999997 77888999999999999999986 8899999999999999977
Q ss_pred hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
..........|+++.+++.+...+...++.++.+|.+++
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 544444334689999999888888899999999999987
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.23 E-value=3.2e-09 Score=107.63 Aligned_cols=251 Identities=20% Similarity=0.164 Sum_probs=189.4
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073 100 IVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV 179 (407)
Q Consensus 100 i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 179 (407)
+..+++.|... +....++..++......+. .+....+.+...|...+. +..+.+..+|..+-... ......
T Consensus 5 ~~~~l~~l~~~-~~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~~~~~--e~v~~~~~iL~~~l~~~-~~~~l~ 75 (503)
T PF10508_consen 5 INELLEELSSK-AERLEALPELKTELSSSPF-----LERLPEPVLFDCLNTSNR--EQVELICDILKRLLSAL-SPDSLL 75 (503)
T ss_pred HHHHHHHHhcc-cchHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHhhcCh--HHHHHHHHHHHHHHhcc-CHHHHH
Confidence 45666666655 5667777777775443221 111112337777776543 22556666666544322 223332
Q ss_pred hccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 180 INNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
.+ ..+.|...|.++++.+|..++..|.++..+.+....+....++++.++..+.++ +.++.+.|+.+|.+|+.
T Consensus 76 --~~--~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~---d~~Va~~A~~~L~~l~~ 148 (503)
T PF10508_consen 76 --PQ--YQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP---DLSVAKAAIKALKKLAS 148 (503)
T ss_pred --HH--HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC---cHHHHHHHHHHHHHHhC
Confidence 22 688999999999999999999999999887776666667779999999999998 99999999999999999
Q ss_pred CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073 260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC 339 (407)
Q Consensus 260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 339 (407)
.+.+...+++.+.+..|..++... +..++-+++.++..++...+.-...+...|.++.+++.+.+.+...+.+|+.+|.
T Consensus 149 ~~~~~~~l~~~~~~~~L~~l~~~~-~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~ 227 (503)
T PF10508_consen 149 HPEGLEQLFDSNLLSKLKSLMSQS-SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLS 227 (503)
T ss_pred CchhHHHHhCcchHHHHHHHHhcc-CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 888888888999999999999885 6678889999999998754444444444788999999887766788999999999
Q ss_pred HHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 340 SVCKFSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 340 ~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
.++.... ....+.+.|++++|..++...
T Consensus 228 ~La~~~~---g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 228 ELAETPH---GLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred HHHcChh---HHHHHHhCCHHHHHHHHHhcc
Confidence 9998332 478888999999999999743
No 27
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.23 E-value=1.5e-10 Score=93.86 Aligned_cols=112 Identities=22% Similarity=0.233 Sum_probs=98.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-chH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~ 264 (407)
.++.|+.+|++++...+..++.+|.+++...+.........|+++.|+.+|.++ ++.++..++++|++|+... ..+
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---~~~v~~~a~~~L~~l~~~~~~~~ 84 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE---DEEVVKAALWALRNLAAGPEDNK 84 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC---CHHHHHHHHHHHHHHccCcHHHH
Confidence 699999999999999999999999999987444443444458899999999998 9999999999999999976 466
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
..+.+.|+++.|+++|.+. +..+++.++++|.+|+.
T Consensus 85 ~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 85 LIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 7778899999999999987 78999999999999873
No 28
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.20 E-value=3.6e-09 Score=100.02 Aligned_cols=264 Identities=13% Similarity=0.142 Sum_probs=196.3
Q ss_pred HHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-CC-----chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073 117 CLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-GS-----DECDEALSILYHLNVSESYLKSIVINNGEEFLESL 190 (407)
Q Consensus 117 al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-~~-----~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L 190 (407)
..+.|...+ +++..+-.++++|.++.++.+++.... +. .....+......+..+++.-.. +...+ +++..+
T Consensus 244 ~feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~-L~~~p-~~l~~~ 320 (604)
T KOG4500|consen 244 IFEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQK-LHADP-QFLDFL 320 (604)
T ss_pred HHHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHH-HhcCc-HHHHHH
Confidence 444555554 457889999999999999999987322 11 1233344444455556654344 44344 599999
Q ss_pred HHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCC--CCCHHHHHHHHHHHHHhCCCCchHHHHH
Q 040073 191 MRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH--QFSQQASKAALKLLVELCPWGRNRIKAV 268 (407)
Q Consensus 191 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~~~A~~aL~~L~~~~~n~~~~v 268 (407)
+..+.+.+......++.+|.|++..++.+..++. .|++..|+++|.... ..+.+.+.+++.||+||...-.||..++
T Consensus 321 ~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 321 ESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred HHHhcCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 9999999999999999999999999998888877 589999999886310 0277899999999999999999999999
Q ss_pred hcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCc--h---hhHHHHHHHHHHh
Q 040073 269 EGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSH--A---ASDRAVRILCSVC 342 (407)
Q Consensus 269 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~--~---~~e~a~~~L~~l~ 342 (407)
.+|.+++++..+... .+.++-+-+++|+-+-...+. -.++.. =|.++..+.++++ . ..-...+.|.-+-
T Consensus 400 ~aGvteaIL~~lk~~-~ppv~fkllgTlrM~~d~qe~~a~eL~k----n~~l~ekLv~Wsks~D~aGv~gESnRll~~lI 474 (604)
T KOG4500|consen 400 PAGVTEAILLQLKLA-SPPVTFKLLGTLRMIRDSQEYIACELAK----NPELFEKLVDWSKSPDFAGVAGESNRLLLGLI 474 (604)
T ss_pred ccchHHHHHHHHHhc-CCcchHHHHHHHHHHHhchHHHHHHHhc----CHHHHHHHHHhhhCCccchhhhhhhHHHHHHH
Confidence 999999999999886 788888889998888665442 223333 2566666666542 1 2344567777788
Q ss_pred ccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 343 KFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
+++....+...+.+.|+|..++.++.++ .-..+..|...|-.+...|
T Consensus 475 kHs~~kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~y 521 (604)
T KOG4500|consen 475 KHSKYKDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKY 521 (604)
T ss_pred HhhHhhhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHh
Confidence 8876667889999999999999999865 5666777766666666544
No 29
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=99.16 E-value=1.1e-11 Score=85.72 Aligned_cols=45 Identities=31% Similarity=0.632 Sum_probs=33.0
Q ss_pred cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
.++||||++.|+|||+. .|||+|+|.+|.+|+...+...||+.|.
T Consensus 11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~GC 56 (57)
T PF11789_consen 11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAGC 56 (57)
T ss_dssp -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC-
T ss_pred ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCCC
Confidence 48999999999999986 7999999999999996555678999763
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=99.10 E-value=3.8e-11 Score=77.71 Aligned_cols=37 Identities=19% Similarity=0.522 Sum_probs=24.0
Q ss_pred CccccccCcC----ceecCCcccccHHHHHHHHhcC--CCCCCc
Q 040073 12 CPISLQLMRD----PVTVSTGITYDRVNIERWLFTC--KNNTCP 49 (407)
Q Consensus 12 Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~--~~~~cP 49 (407)
||||.+ |.+ |++++|||+||+.||++++..+ +.+.||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 999 9999999999999999999864 356787
No 31
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.10 E-value=9.2e-09 Score=98.19 Aligned_cols=239 Identities=15% Similarity=0.126 Sum_probs=165.5
Q ss_pred cHHHHHHHhhcc-CCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073 140 AIEFLATIITKS-DAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE 214 (407)
Q Consensus 140 ~i~~Lv~lL~~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 214 (407)
....++++|..- .. .+.....+..+..+...++...+.+... .+.....++.++.+++..++..|+.+|..|..
T Consensus 56 ~~~~~l~lL~~~~~~-~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~ 134 (312)
T PF03224_consen 56 YASLFLNLLNKLSSN-DDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLS 134 (312)
T ss_dssp ------HHHHHH----HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 467778888776 33 3457888888888776665555555541 11257788889999999999999999999987
Q ss_pred cCCchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHh------hcccchh
Q 040073 215 VADPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL------LDVTERR 287 (407)
Q Consensus 215 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL------~~~~~~~ 287 (407)
..+....... .+.++.+++.+++... .+.+.+..|+.+|.+|...+..|..+.+.|+++.|..+| .+..+..
T Consensus 135 ~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Q 213 (312)
T PF03224_consen 135 QGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQ 213 (312)
T ss_dssp STTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHH
T ss_pred cCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchh
Confidence 7655443322 4678888888875300 044567999999999999999999999999999999999 2333567
Q ss_pred HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073 288 VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV 366 (407)
Q Consensus 288 ~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l 366 (407)
+.-.++-+++.|+-+++....+..+ +.|+.|++.+... .++....++.+|.|+.....+. ....|+..|++ +++..
T Consensus 214 l~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~-~~~~mv~~~~l-~~l~~ 290 (312)
T PF03224_consen 214 LQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKS-NIELMVLCGLL-KTLQN 290 (312)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTT-HHHHHHHH-HH-HHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHH-HHHHHHHccHH-HHHHH
Confidence 7889999999999999998888875 5899999977665 4788999999999999876543 78888887766 55566
Q ss_pred HhcC--CCHHHHHHHHHHH
Q 040073 367 LQVD--ASVKTKERAREIL 383 (407)
Q Consensus 367 l~~~--~~~~~k~~A~~lL 383 (407)
|+.. .++...+--..+-
T Consensus 291 L~~rk~~Dedl~edl~~L~ 309 (312)
T PF03224_consen 291 LSERKWSDEDLTEDLEFLK 309 (312)
T ss_dssp HHSS--SSHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHH
Confidence 6544 4666666544443
No 32
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.10 E-value=4.9e-11 Score=76.41 Aligned_cols=38 Identities=42% Similarity=0.831 Sum_probs=32.7
Q ss_pred CccccccCcCc-eecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073 12 CPISLQLMRDP-VTVSTGITYDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 12 Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~~~~~~~~~cP~~ 51 (407)
||||.+.++|| |.++|||+||+.||++|++. +..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC--cCCCcCC
Confidence 89999999999 57899999999999999975 5789986
No 33
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=99.07 E-value=2.3e-08 Score=94.68 Aligned_cols=286 Identities=12% Similarity=0.146 Sum_probs=200.4
Q ss_pred CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---C--CchHHHHHHHHHhc
Q 040073 95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---G--SDECDEALSILYHL 168 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~--~~~~~~a~~~L~~L 168 (407)
++.+.+..|.+...|++ +.-.+.-+.|.+++-++.++|..+.+.||-..++..|+..-. + ......+.+.|.|-
T Consensus 84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny 163 (604)
T KOG4500|consen 84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNY 163 (604)
T ss_pred hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHh
Confidence 45566666666666776 777888999999999999999999999998888898875432 1 12244555688887
Q ss_pred CCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHH
Q 040073 169 NVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQ 245 (407)
Q Consensus 169 ~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 245 (407)
..+.++.+..+.+.| +++.|+..+.- .+.+.-+......++|.+. .+.-.....+....-.|++++... ..++
T Consensus 164 ~l~~~~l~aq~~~~g--Vl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~--v~~d 239 (604)
T KOG4500|consen 164 ILDSRELRAQVADAG--VLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSM--VRED 239 (604)
T ss_pred hCCcHHHHHHHHhcc--cHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHh--hccc
Confidence 777777777777776 89989888753 3555556555555555443 333334445556677788888766 5777
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccc-------hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073 246 ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTE-------RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV 318 (407)
Q Consensus 246 ~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~-------~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~ 318 (407)
..+..+..|...+.++.-+-.+++.|.+..++.++..-.+ ...-..++.....|..+++.-..+...+.....
T Consensus 240 ~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~ 319 (604)
T KOG4500|consen 240 IDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF 319 (604)
T ss_pred hhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence 8888999999999999999999999999999999987211 222334444444455556665666553222333
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc----CCCHHHHHHHHHHHHHHH
Q 040073 319 VSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV----DASVKTKERAREILKLNA 387 (407)
Q Consensus 319 Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~----~~~~~~k~~A~~lL~~l~ 387 (407)
++.-+.+.+....--+.-++.|+++. +..+..+++.|.+.+|+++|-. +++-+.+..+...|+.|.
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~---D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARR---DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 33333333456677777888999974 3468899999999999999854 256677777777887764
No 34
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.02 E-value=1.6e-07 Score=94.87 Aligned_cols=267 Identities=19% Similarity=0.234 Sum_probs=196.6
Q ss_pred ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
....|+.|..+..++. ++|+.|+..|..+++ .+|..+...| +++|++.|..+....+....++.+++++..+++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 3567899999998776 999999999999986 4788877777 699999998776544568889999988776653
Q ss_pred ------H----------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--chhhhhchhhhHHHHHHH
Q 040073 174 ------Y----------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--PFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 174 ------~----------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~l 235 (407)
+ ..+++.... +.|..|+..+...+..+|..++..|.++..... -...+....-+|..|+.+
T Consensus 96 ~~~v~dds~qsdd~g~~iae~fik~q-d~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 96 SPEVMDDSTQSDDLGLWIAEQFIKNQ-DNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred chhhcccchhhhHHHHHHHHHHHcCc-hhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 1 122333333 279999999999999999999999999976543 334455555579999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCH-hhHHHHH
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCA-EGRAELL 310 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~-~~r~~i~ 310 (407)
|.+. ...++..|+..|..|.....+..++|- ++++..|..++...+ +.-+++.|+..|-+|-... .++.-+.
T Consensus 175 L~Ds---rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr 251 (970)
T KOG0946|consen 175 LRDS---REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR 251 (970)
T ss_pred Hhhh---hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh
Confidence 9887 677888899999999998887777766 789999999998743 2468899999999998854 4565555
Q ss_pred hccCchHHHHHHHHcC---C-------chh---hHHHHHHHHHHhccCCc----hHHHHHHHHhChHHHHHHHHhcCC
Q 040073 311 KHGAGLAVVSKKILRV---S-------HAA---SDRAVRILCSVCKFSAT----ARVLQEMLQVGVVSKLCLVLQVDA 371 (407)
Q Consensus 311 ~~~g~i~~Lv~~l~~~---s-------~~~---~e~a~~~L~~l~~~~~~----~~~~~~~~~~g~i~~Ll~ll~~~~ 371 (407)
+ ++.||.|.++|... + +.- --.++-++..+..-... +.....+.+.+++..|..++.+++
T Consensus 252 E-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~ 328 (970)
T KOG0946|consen 252 E-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPG 328 (970)
T ss_pred c-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCC
Confidence 5 78999999855321 1 111 12233344444432111 234456778899999999987664
No 35
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=99.01 E-value=2.1e-10 Score=74.46 Aligned_cols=40 Identities=33% Similarity=0.762 Sum_probs=36.7
Q ss_pred CccccccCcCce-ecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073 12 CPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 12 Cpi~~~~~~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~ 51 (407)
||||.+.+.+|+ +++|||+||+.||.+|++..+...||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999999 8899999999999999985457889986
No 36
>PRK09687 putative lyase; Provisional
Probab=99.01 E-value=7.2e-08 Score=90.19 Aligned_cols=119 Identities=16% Similarity=0.053 Sum_probs=71.6
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA 307 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~ 307 (407)
+++.|+.+|++. ++.++..|+.+|..+....+ .+++.|+.+|.+. +..++..|+..|..+-.
T Consensus 160 ai~~L~~~L~d~---~~~VR~~A~~aLg~~~~~~~--------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~~------ 221 (280)
T PRK09687 160 AIPLLINLLKDP---NGDVRNWAAFALNSNKYDNP--------DIREAFVAMLQDK-NEEIRIEAIIGLALRKD------ 221 (280)
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHhcCCCCCH--------HHHHHHHHHhcCC-ChHHHHHHHHHHHccCC------
Confidence 466666666665 66666666666666521111 3456666666654 56666666666655321
Q ss_pred HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
...||.|++.+.++. ....++.+|..+.. .-+++.|..++..+.+++++.+|.+.|+
T Consensus 222 -----~~av~~Li~~L~~~~--~~~~a~~ALg~ig~-------------~~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 222 -----KRVLSVLIKELKKGT--VGDLIIEAAGELGD-------------KTLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred -----hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC-------------HhHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 134667777554432 34455555555542 1367888888875668888888887775
No 37
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.5e-10 Score=99.21 Aligned_cols=75 Identities=40% Similarity=0.576 Sum_probs=69.6
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..++|+.++|.|+.++|+|||+.|+|.||+|.-|++++.+- ..+.|+|+.+++.. +++||.+|+..|..|...|.
T Consensus 205 ~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rv-ghfdpvtr~~Lte~---q~ipN~alkevIa~fl~~n~ 279 (284)
T KOG4642|consen 205 KREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRV-GHFDPVTRWPLTEY---QLIPNLALKEVIAAFLKENE 279 (284)
T ss_pred cccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHh-ccCCchhcccCCHH---hhccchHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999875 45799999999985 99999999999999998876
No 38
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.90 E-value=6e-10 Score=101.36 Aligned_cols=66 Identities=17% Similarity=0.326 Sum_probs=59.1
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~ 78 (407)
.-++|-||.++|+-||+++||||||--||.+++.. +..||.|..++.+ + .|..|+.+-.+|+.+..
T Consensus 22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~--~p~CP~C~~~~~E-s--~Lr~n~il~Eiv~S~~~ 87 (442)
T KOG0287|consen 22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY--KPQCPTCCVTVTE-S--DLRNNRILDEIVKSLNF 87 (442)
T ss_pred HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc--CCCCCceecccch-h--hhhhhhHHHHHHHHHHH
Confidence 34799999999999999999999999999999975 7899999999988 4 89999998888888744
No 39
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.89 E-value=2.2e-07 Score=89.18 Aligned_cols=271 Identities=15% Similarity=0.165 Sum_probs=171.2
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 180 (407)
-|++.|.-++ +...-...-|..++-- .+|+..+.+.|.|+.|++++...++ +.+...+..|.|++.+.....+++
T Consensus 308 mLVKaLdr~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~--dL~~~tl~LlfNlSFD~glr~KMv- 383 (791)
T KOG1222|consen 308 MLVKALDRSNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHP--DLRKATLMLLFNLSFDSGLRPKMV- 383 (791)
T ss_pred HHHHHHcccchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCH--HHHHHHHHHhhhccccccccHHHh-
Confidence 3444444343 3333444566666665 6899999999999999999987766 568888999999998875444544
Q ss_pred ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
..| .+|.|+.+|.+.+. ..-|..+|..++..++.+..+ ....+|+.|...+-.+ .+.++-..-...-.|||.+
T Consensus 384 ~~G--llP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mf-ayTdci~~lmk~v~~~--~~~~vdl~lia~ciNl~ln 456 (791)
T KOG1222|consen 384 NGG--LLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMF-AYTDCIKLLMKDVLSG--TGSEVDLALIALCINLCLN 456 (791)
T ss_pred hcc--chHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHH-HHHHHHHHHHHHHHhc--CCceecHHHHHHHHHHHhc
Confidence 344 89999999976433 356788888887666655544 4467899888765443 1222222222222355554
Q ss_pred CchHHHHHhcCch-------------------------------------HHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 261 GRNRIKAVEGGGV-------------------------------------SVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 261 ~~n~~~~v~~G~v-------------------------------------~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
..|...+++..++ .-|...+....+....-+++++|.+|...+
T Consensus 457 kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~d 536 (791)
T KOG1222|consen 457 KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTD 536 (791)
T ss_pred cccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCC
Confidence 4444333332233 333344433335567789999999999987
Q ss_pred hhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHH
Q 040073 304 EGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERA 379 (407)
Q Consensus 304 ~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A 379 (407)
-....|......||-+-..+.-+. +...-..+-.+..++ .+..+......+|.|+.|+++|++. .++-+.+--
T Consensus 537 ldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a---~d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~Qii 613 (791)
T KOG1222|consen 537 LDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMA---RDLDCARLLAPAKLIDTLIELLQACQEDDEFVVQII 613 (791)
T ss_pred CCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhh---hhhHHHHHhCccccHHHHHHHHHhhcccchHHHHHH
Confidence 778888887888888777655442 222222333333333 3445666777899999999999863 133333333
Q ss_pred HHHHHHH
Q 040073 380 REILKLN 386 (407)
Q Consensus 380 ~~lL~~l 386 (407)
-..++.+
T Consensus 614 yVF~Q~l 620 (791)
T KOG1222|consen 614 YVFLQFL 620 (791)
T ss_pred HHHHHHH
Confidence 3344443
No 40
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.89 E-value=4.7e-10 Score=77.47 Aligned_cols=59 Identities=19% Similarity=0.361 Sum_probs=32.8
Q ss_pred CcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHH
Q 040073 8 AHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLI 73 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I 73 (407)
.-++|++|.++|++||.+ .|.|.||+.||.+.+.. -||+|..+.+.. ++.-|+.|.++|
T Consensus 6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~----~CPvC~~Paw~q---D~~~NrqLd~~i 65 (65)
T PF14835_consen 6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS----ECPVCHTPAWIQ---DIQINRQLDSMI 65 (65)
T ss_dssp HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT----B-SSS--B-S-S---S----HHHHHHH
T ss_pred HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC----CCCCcCChHHHH---HHHhhhhhhccC
Confidence 347999999999999965 69999999999886632 399999998775 888899988776
No 41
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.87 E-value=1.5e-09 Score=73.66 Aligned_cols=47 Identities=28% Similarity=0.477 Sum_probs=41.0
Q ss_pred CcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCcccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
+++.|+||++-+.+++..+|||. ||..|+.+|+.. ...||+|+++++
T Consensus 1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLKR--KKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT--TSBBTTTTBB-S
T ss_pred CcCCCccCCccCCceEEeCCCChHHHHHHhHHhccc--CCCCCcCChhhc
Confidence 46899999999999999999999 999999999973 789999998774
No 42
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.87 E-value=6.7e-08 Score=92.67 Aligned_cols=193 Identities=18% Similarity=0.154 Sum_probs=149.2
Q ss_pred HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc
Q 040073 158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 237 (407)
...|+-.|.||+.+-..--++... + .+..||+.|...+.+........|..|+...+++..+.. .|.+..|+++..
T Consensus 280 Lrva~ylLlNlAed~~~ElKMrrk-n--iV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL~klfp 355 (791)
T KOG1222|consen 280 LRVAVYLLLNLAEDISVELKMRRK-N--IVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKLLKLFP 355 (791)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHH-h--HHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHHHHhcC
Confidence 455667788888655332344443 3 799999999999999999999999999999998887766 589999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073 238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA 317 (407)
Q Consensus 238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~ 317 (407)
.. +++.++..+..|.||+-...++.+++..|.+|.|..+|.+.. -..-|+.+|..++..++.+..+.. ...|+
T Consensus 356 ~~---h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~---~~~iA~~~lYh~S~dD~~K~Mfay-Tdci~ 428 (791)
T KOG1222|consen 356 IQ---HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDT---KHGIALNMLYHLSCDDDAKAMFAY-TDCIK 428 (791)
T ss_pred CC---CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCcc---cchhhhhhhhhhccCcHHHHHHHH-HHHHH
Confidence 88 999999999999999999999999999999999999998752 234588999999998888877765 56899
Q ss_pred HHHHHHHcCC-chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH
Q 040073 318 VVSKKILRVS-HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC 364 (407)
Q Consensus 318 ~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll 364 (407)
.+++.+..++ .+....-++.-.++|...++ .+.+.+-.++..|+
T Consensus 429 ~lmk~v~~~~~~~vdl~lia~ciNl~lnkRN---aQlvceGqgL~~LM 473 (791)
T KOG1222|consen 429 LLMKDVLSGTGSEVDLALIALCINLCLNKRN---AQLVCEGQGLDLLM 473 (791)
T ss_pred HHHHHHHhcCCceecHHHHHHHHHHHhcccc---ceEEecCcchHHHH
Confidence 9999888765 34433334444677765444 33344434444443
No 43
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=98.83 E-value=2.4e-07 Score=88.49 Aligned_cols=206 Identities=14% Similarity=0.176 Sum_probs=143.9
Q ss_pred hHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhch------hhhHHHHHHHcccCCCCCHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVK------QEFFTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~~ 248 (407)
+++...|+.....++.+|+. .+.++.+.....+..+...++.....+.. .....++++++..+ +..++.
T Consensus 47 ~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~---D~~i~~ 123 (312)
T PF03224_consen 47 ELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN---DSFIQL 123 (312)
T ss_dssp ---------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S---SHHHHH
T ss_pred HHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC---CHHHHH
Confidence 34443332356677777764 58999999999999998877766555443 12678899999888 999999
Q ss_pred HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH--
Q 040073 249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI-- 323 (407)
Q Consensus 249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l-- 323 (407)
.|+..|..|....+.+..-...+.++.+++.|.+. .+.+....++.+|.+|...++.|..+.+ .+|++.++..+
T Consensus 124 ~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~ 202 (312)
T PF03224_consen 124 KAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRK 202 (312)
T ss_dssp HHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHh
Confidence 99999999988766555544467788898888763 1456678999999999999999999998 68999999977
Q ss_pred ---HcC--CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 324 ---LRV--SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 324 ---~~~--s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
... +...+-+++-++|.++. +.+....+.+.+.|+.|+.+++....+++-+-+-.+|++|-..
T Consensus 203 ~~~~~~~~~~Ql~Y~~ll~lWlLSF---~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~ 270 (312)
T PF03224_consen 203 QATNSNSSGIQLQYQALLCLWLLSF---EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSK 270 (312)
T ss_dssp --------HHHHHHHHHHHHHHHTT---SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSS
T ss_pred hcccCCCCchhHHHHHHHHHHHHhc---CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence 122 25668889999999995 5668899999999999999999877888888888888887653
No 44
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=7.4e-07 Score=90.78 Aligned_cols=259 Identities=16% Similarity=0.160 Sum_probs=191.1
Q ss_pred hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHh-hhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 97 KTQIVKILNDAKKS-P-STGRKCLRRLRSIT-LQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~-~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
...+.+|++.|.+. + ..|.+|+.+|+.+. ..+++.-..+--.-++|.|+.+|.+.... +.+..|.++|.+|+.--+
T Consensus 166 sSk~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~-DIMl~AcRaltyl~evlP 244 (1051)
T KOG0168|consen 166 SSKAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNF-DIMLLACRALTYLCEVLP 244 (1051)
T ss_pred hHHHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccH-HHHHHHHHHHHHHHhhcc
Confidence 45678888888755 5 77889999988864 33444444444456799999999987763 359999999999997666
Q ss_pred HHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
....++.+.+ +||.|+.-|.. .-.++-+++..+|..|+..+. +.+.. +|++-..+..|.=- +..+++.|+.
T Consensus 245 ~S~a~vV~~~--aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~-AG~l~a~LsylDFF---Si~aQR~Ala 316 (1051)
T KOG0168|consen 245 RSSAIVVDEH--AIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQ-AGALSAVLSYLDFF---SIHAQRVALA 316 (1051)
T ss_pred chhheeeccc--chHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHh-cccHHHHHHHHHHH---HHHHHHHHHH
Confidence 6777888776 89999977765 678889999999999986543 33444 57788888888655 7889999999
Q ss_pred HHHHhCCC--CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcC
Q 040073 253 LLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 253 aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
+-.|+|.. .+.-..+++ ++|.|..+|... +....+.++-.+..++. .++--.++..+ +.|....+++.-.
T Consensus 317 iaaN~Cksi~sd~f~~v~e--alPlL~~lLs~~-D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 317 IAANCCKSIRSDEFHFVME--ALPLLTPLLSYQ-DKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQLLSVT 392 (1051)
T ss_pred HHHHHHhcCCCccchHHHH--HHHHHHHHHhhc-cchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHHHHhcC
Confidence 99999983 344445555 599999999887 78888988888888876 23334555554 5677666655432
Q ss_pred ----CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 327 ----SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 327 ----s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
+....-..+..|..+|++++. .+....+.+....|-.+|+..
T Consensus 393 ~t~Ls~~~~~~vIrmls~msS~~pl--~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 393 PTILSNGTYTGVIRMLSLMSSGSPL--LFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred cccccccchhHHHHHHHHHccCChH--HHHHHHHhhHHHHHHHHHhcc
Confidence 233455556777777776554 577777888888888888744
No 45
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.78 E-value=4.1e-09 Score=94.49 Aligned_cols=49 Identities=20% Similarity=0.360 Sum_probs=41.4
Q ss_pred CCCcccCccccccCcCc--------eecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 6 VPAHFLCPISLQLMRDP--------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dP--------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
..++..||||++.+.+| |+.+|||+||+.||.+|+.. +.+||.|+.++.
T Consensus 171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~--~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE--KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc--CCCCCCCCCEee
Confidence 45678999999987764 56789999999999999864 779999998764
No 46
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.77 E-value=2.8e-09 Score=70.25 Aligned_cols=40 Identities=38% Similarity=0.792 Sum_probs=34.1
Q ss_pred cCccccccCc---CceecCCcccccHHHHHHHHhcCCCCCCcccc
Q 040073 11 LCPISLQLMR---DPVTVSTGITYDRVNIERWLFTCKNNTCPVTK 52 (407)
Q Consensus 11 ~Cpi~~~~~~---dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~ 52 (407)
.||||++.|. .++.++|||.|+++||.+|++. +.+||.|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~--~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR--NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH--SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh--CCcCCccC
Confidence 4999999994 5668899999999999999986 67999995
No 47
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=7.8e-07 Score=90.60 Aligned_cols=202 Identities=14% Similarity=0.122 Sum_probs=153.8
Q ss_pred HHHHHHHHH-hcCCChhHHHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073 158 CDEALSILY-HLNVSESYLKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 158 ~~~a~~~L~-~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 235 (407)
+.+|+.-|+ +|.+++++.-..+--. .++|.|+.+|+.. +.++...|+++|.+|+..-+....+++..++||.|+.-
T Consensus 185 Qleal~Elce~L~mgnEesLs~fpv~--slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~k 262 (1051)
T KOG0168|consen 185 QLEALTELCEMLSMGNEESLSGFPVK--SLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEK 262 (1051)
T ss_pred HHHHHHHHHHHHhhcchhhhccccHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHh
Confidence 555555555 3556665543333322 3899999999974 89999999999999998877777777778999999976
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc--CHhhHHHHHhcc
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR--CAEGRAELLKHG 313 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~--~~~~r~~i~~~~ 313 (407)
|..= ...++.+.++.||-.|+..+ -+.+.++|++...+..|.=- +..++..|+++-.|+|. .++.-.-+++
T Consensus 263 L~~I--eyiDvAEQ~LqALE~iSR~H--~~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~Cksi~sd~f~~v~e-- 335 (1051)
T KOG0168|consen 263 LLTI--EYIDVAEQSLQALEKISRRH--PKAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCCKSIRSDEFHFVME-- 335 (1051)
T ss_pred hhhh--hhhHHHHHHHHHHHHHHhhc--cHHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCccchHHHH--
Confidence 6543 17899999999999998743 45789999999999988655 67889999999999997 3455555555
Q ss_pred CchHHHHHHHHcCCchhhHHHHHHHHHHhccC-CchHHHHHHHHhChHHHHHHHHhc
Q 040073 314 AGLAVVSKKILRVSHAASDRAVRILCSVCKFS-ATARVLQEMLQVGVVSKLCLVLQV 369 (407)
Q Consensus 314 g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~-~~~~~~~~~~~~g~i~~Ll~ll~~ 369 (407)
.+|.|-.++...+.+.-|.++.++..++... ...+..+++.+.|.|.....+|..
T Consensus 336 -alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv 391 (1051)
T KOG0168|consen 336 -ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV 391 (1051)
T ss_pred -HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence 5899888777777888888888888877643 233467777778888777766643
No 48
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.74 E-value=8.3e-06 Score=79.89 Aligned_cols=255 Identities=13% Similarity=0.070 Sum_probs=182.1
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE 214 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 214 (407)
..+..++++|...... +.....+..+..|...++.....+.+. . .....++.+|.+++.-+...|..+|..+..
T Consensus 53 ~y~~~~l~ll~~~~~~-d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~-~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 53 QYVKTFVNLLSQIDKD-DTVRYVLTLIDDMLQEDDTRVKLFHDDALLKK-KTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHhchHHHHHHHHHhhccc-cchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 4577888888876553 347777777777766665544555442 2 256788889998899999999999999876
Q ss_pred cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc-chhHHHHHH
Q 040073 215 VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELML 293 (407)
Q Consensus 215 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al 293 (407)
....+..-....-.+.-|...+++. .+...+..++.+|..|...++.|..+.+.++++.|+.+|.... +..+.-.++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~--~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l 208 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNI--TNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI 208 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhcc--CCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence 5432211111111334455666654 2578888899999999999999999999999999999998753 457778999
Q ss_pred HHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhHHHHHHHHHHhccCC----chHHHHHHHHhChHHHHHHHHh
Q 040073 294 NVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASDRAVRILCSVCKFSA----TARVLQEMLQVGVVSKLCLVLQ 368 (407)
Q Consensus 294 ~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~----~~~~~~~~~~~g~i~~Ll~ll~ 368 (407)
-+++.|+-.+++...... .+.|+.++..+.... ++....++.+|.|+...+. .......|+..|. ++++..|+
T Consensus 209 l~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l-~~~l~~L~ 286 (429)
T cd00256 209 FCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKV-LKTLQSLE 286 (429)
T ss_pred HHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcCh-HHHHHHHh
Confidence 999999998876555443 678999999776543 7889999999999998542 2335667777775 56667776
Q ss_pred cC--CCHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 040073 369 VD--ASVKTKERAREILKLNARAWRDSPCVPAH 399 (407)
Q Consensus 369 ~~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 399 (407)
.. .++...+--..+-..|.+....-+..+-|
T Consensus 287 ~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y 319 (429)
T cd00256 287 QRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEY 319 (429)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 55 58888888777777777765444444433
No 49
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.5e-06 Score=81.33 Aligned_cols=183 Identities=22% Similarity=0.189 Sum_probs=142.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
+.+..|+..|..++.+ =+|...+...|+...|+..|.+.+. .+++.|+++|+....+++..+..+.+.| +++.|+
T Consensus 98 e~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~--~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~--~L~~Ll 172 (342)
T KOG2160|consen 98 EDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDA--ELRELAARVIGTAVQNNPKSQEQVIELG--ALSKLL 172 (342)
T ss_pred HHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcH--HHHHHHHHHHHHHHhcCHHHHHHHHHcc--cHHHHH
Confidence 8889999999999986 6889999999999999999998877 5699999999999998888888888776 799999
Q ss_pred HHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHh
Q 040073 192 RVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVE 269 (407)
Q Consensus 192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~ 269 (407)
..|.+ ++..++.+|..++.+|..+...-..-+...++...|...|+++ +.+...+..++..+.+|...+. .+..+-.
T Consensus 173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~ 251 (342)
T KOG2160|consen 173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQEDKSDEDIASS 251 (342)
T ss_pred HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 99986 4677889999999999887765444433344589999999873 1277899999999999888544 4444444
Q ss_pred cCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 270 GGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 270 ~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.|....+..+.... +.++.+.++.++-.+..
T Consensus 252 ~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 252 LGFQRVLENLISSL-DFEVNEAALTALLSLLS 282 (342)
T ss_pred hhhhHHHHHHhhcc-chhhhHHHHHHHHHHHH
Confidence 56555555555554 66777777776665544
No 50
>PRK09687 putative lyase; Provisional
Probab=98.73 E-value=1e-06 Score=82.47 Aligned_cols=195 Identities=14% Similarity=0.023 Sum_probs=126.5
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHhhccCCc
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
+++.+..++.+.+. .++..|+++|..|...... . . .+++.|..+ ++..+..+|..|+.+|.++......
T Consensus 55 ~~~~l~~ll~~~d~--~vR~~A~~aLg~lg~~~~~-----~-~--~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~ 124 (280)
T PRK09687 55 VFRLAIELCSSKNP--IERDIGADILSQLGMAKRC-----Q-D--NVFNILNNLALEDKSACVRASAINATGHRCKKNPL 124 (280)
T ss_pred HHHHHHHHHhCCCH--HHHHHHHHHHHhcCCCccc-----h-H--HHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccc
Confidence 45666666665544 4577788888776542211 1 1 157777766 4556777888888888877432211
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL 298 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 298 (407)
....++..|...+.++ +..++..|+.+|..+. ...+++.|+.+|.+. +..++..|+.+|..
T Consensus 125 -----~~~~a~~~l~~~~~D~---~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~-~~~VR~~A~~aLg~ 185 (280)
T PRK09687 125 -----YSPKIVEQSQITAFDK---STNVRFAVAFALSVIN----------DEAAIPLLINLLKDP-NGDVRNWAAFALNS 185 (280)
T ss_pred -----cchHHHHHHHHHhhCC---CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCC-CHHHHHHHHHHHhc
Confidence 1134566777777776 7788888888875442 122688888888875 67888888888887
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER 378 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~ 378 (407)
+.... ...++.|+..+.+.+..++..|+..|..+- + .-+++.|+..|+.+ . .+..
T Consensus 186 ~~~~~---------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~---------~~av~~Li~~L~~~-~--~~~~ 240 (280)
T PRK09687 186 NKYDN---------PDIREAFVAMLQDKNEEIRIEAIIGLALRK----D---------KRVLSVLIKELKKG-T--VGDL 240 (280)
T ss_pred CCCCC---------HHHHHHHHHHhcCCChHHHHHHHHHHHccC----C---------hhHHHHHHHHHcCC-c--hHHH
Confidence 73211 234567788776667788888877776643 2 14788999998853 3 5667
Q ss_pred HHHHHHHHHh
Q 040073 379 AREILKLNAR 388 (407)
Q Consensus 379 A~~lL~~l~~ 388 (407)
|+..|..+..
T Consensus 241 a~~ALg~ig~ 250 (280)
T PRK09687 241 IIEAAGELGD 250 (280)
T ss_pred HHHHHHhcCC
Confidence 7777776644
No 51
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.70 E-value=3.1e-06 Score=92.01 Aligned_cols=229 Identities=16% Similarity=0.066 Sum_probs=124.2
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
+...++.|++.|.+++ .+|..|+..|..+.. .++++.|+.+|.+.+. .++..|+.+|..+....
T Consensus 619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~--~VR~~Aa~aL~~l~~~~-- 683 (897)
T PRK13800 619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAA--AVRRAAAEGLRELVEVL-- 683 (897)
T ss_pred cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhcc--
Confidence 4445667777777776 778888888877632 2357888888876655 46888877776652100
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-----------Cch-h-----hhhchhhhHHHHHHHcc
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-----------DPF-Q-----LISVKQEFFTEIVNVLR 237 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-----------~~~-~-----~i~~~~g~i~~Lv~lL~ 237 (407)
. ..+.|...|++.++.+|..|+.+|..+...+ +.. + .++. -+..+.|..++.
T Consensus 684 --------~--~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~~~~l~~~L~D~d~~VR~~Av~aL~~-~~~~~~l~~~l~ 752 (897)
T PRK13800 684 --------P--PAPALRDHLGSPDPVVRAAALDVLRALRAGDAALFAAALGDPDHRVRIEAVRALVS-VDDVESVAGAAT 752 (897)
T ss_pred --------C--chHHHHHHhcCCCHHHHHHHHHHHHhhccCCHHHHHHHhcCCCHHHHHHHHHHHhc-ccCcHHHHHHhc
Confidence 0 1233444455555555555555554432100 000 0 0000 000123444454
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073 238 DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA 317 (407)
Q Consensus 238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~ 317 (407)
++ +++++..++.+|..+... +.+.++.|..++.+. ++.++..|+.+|..+...+ ..++
T Consensus 753 D~---~~~VR~~aa~aL~~~~~~--------~~~~~~~L~~ll~D~-d~~VR~aA~~aLg~~g~~~----------~~~~ 810 (897)
T PRK13800 753 DE---NREVRIAVAKGLATLGAG--------GAPAGDAVRALTGDP-DPLVRAAALAALAELGCPP----------DDVA 810 (897)
T ss_pred CC---CHHHHHHHHHHHHHhccc--------cchhHHHHHHHhcCC-CHHHHHHHHHHHHhcCCcc----------hhHH
Confidence 44 555555555555554321 112356677777665 6777777777776664321 1123
Q ss_pred HHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 318 VVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 318 ~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
.++..+.+.+...+..|+.+|..+.. ..+++.|+.+|. +.+..+|+.|+..|..+
T Consensus 811 ~l~~aL~d~d~~VR~~Aa~aL~~l~~-------------~~a~~~L~~~L~-D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 811 AATAALRASAWQVRQGAARALAGAAA-------------DVAVPALVEALT-DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHhcCCChHHHHHHHHHHHhccc-------------cchHHHHHHHhc-CCCHHHHHHHHHHHhcc
Confidence 34554545456667767777665542 123466777776 45777777777777554
No 52
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.69 E-value=9.1e-09 Score=91.83 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=56.6
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN 80 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~ 80 (407)
++|-||.+.++-|+.++||||||.-||.+++.. +.+||+|+.+... . .+..|..++..++.+....
T Consensus 26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~--qp~CP~Cr~~~~e-s--rlr~~s~~~ei~es~~~~r 91 (391)
T COG5432 26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT--QPFCPVCREDPCE-S--RLRGSSGSREINESHARNR 91 (391)
T ss_pred HHhhhhhheeecceecccccchhHHHHHHHhcC--CCCCccccccHHh-h--hcccchhHHHHHHhhhhcc
Confidence 599999999999999999999999999999965 7899999998876 3 6777777777777775543
No 53
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.8e-08 Score=96.40 Aligned_cols=69 Identities=25% Similarity=0.479 Sum_probs=58.8
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..+++.||||.+.|++|++++|||+||+.||..+|. +...||.|+. ... .+.+|..+.++++.....+.
T Consensus 10 ~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~--~~~~Cp~cr~-~~~----~~~~n~~l~~~~~~~~~~~~ 78 (386)
T KOG2177|consen 10 LQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE--GPLSCPVCRP-PSR----NLRPNVLLANLVERLRQLRL 78 (386)
T ss_pred ccccccChhhHHHhhcCccccccchHhHHHHHHhcC--CCcCCcccCC-chh----ccCccHHHHHHHHHHHhcCC
Confidence 557899999999999999999999999999999997 4788999986 332 56689999998888876654
No 54
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.4e-08 Score=88.76 Aligned_cols=55 Identities=31% Similarity=0.545 Sum_probs=48.0
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCcc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
+|-|-||++.=+|||++.|||=||=.||-+|+.-. ....||+|+..++++ .++|=
T Consensus 47 ~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~---~vvPl 102 (230)
T KOG0823|consen 47 FFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSID---TVVPL 102 (230)
T ss_pred ceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccc---eEEee
Confidence 59999999999999999999999999999999753 246789999999885 66663
No 55
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=1.3e-08 Score=84.86 Aligned_cols=47 Identities=26% Similarity=0.563 Sum_probs=40.8
Q ss_pred ccCccccccCcC--ceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 10 FLCPISLQLMRD--PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 10 ~~Cpi~~~~~~d--Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
|.||||++-+.. ||.+.|||.||+.||++.++. ...||.|++.++++
T Consensus 132 ~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~--~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 132 YKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN--TNKCPTCRKKITHK 180 (187)
T ss_pred cCCCceecchhhccccccccchhHHHHHHHHHHHh--CCCCCCcccccchh
Confidence 899999998876 455789999999999999975 67899999988764
No 56
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.63 E-value=2.8e-08 Score=65.51 Aligned_cols=43 Identities=37% Similarity=0.804 Sum_probs=38.2
Q ss_pred cCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccc
Q 040073 11 LCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
.||||.+.+.+|+.+. |||.|++.|+.+|+.. +...||.|+..
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 4999999999999776 9999999999999986 47789999864
No 57
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.59 E-value=2.1e-05 Score=85.63 Aligned_cols=228 Identities=15% Similarity=0.064 Sum_probs=146.9
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh--
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES-- 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-- 173 (407)
+..++.|++.|..++ .++..|+..|..+....+ ..+.|...|.+.+. .++..|+.+|..+...+.
T Consensus 651 ~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----------~~~~L~~~L~~~d~--~VR~~A~~aL~~~~~~~~~~ 718 (897)
T PRK13800 651 PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----------PAPALRDHLGSPDP--VVRAAALDVLRALRAGDAAL 718 (897)
T ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----------chHHHHHHhcCCCH--HHHHHHHHHHHhhccCCHHH
Confidence 445677777777766 888888888877743211 12345555554332 345555555544321110
Q ss_pred ----------HHH----hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073 174 ----------YLK----SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH 239 (407)
Q Consensus 174 ----------~~~----~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~ 239 (407)
..+ ..+..-+ ..+.|..+|.+++.++|..++.+|..+.... .+.++.|..+++++
T Consensus 719 l~~~L~D~d~~VR~~Av~aL~~~~--~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~---------~~~~~~L~~ll~D~ 787 (897)
T PRK13800 719 FAAALGDPDHRVRIEAVRALVSVD--DVESVAGAATDENREVRIAVAKGLATLGAGG---------APAGDAVRALTGDP 787 (897)
T ss_pred HHHHhcCCCHHHHHHHHHHHhccc--CcHHHHHHhcCCCHHHHHHHHHHHHHhcccc---------chhHHHHHHHhcCC
Confidence 000 0000011 2345556677777777777777777764321 23478899999998
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHH
Q 040073 240 HQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVV 319 (407)
Q Consensus 240 ~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~L 319 (407)
++.++..|+.+|.++.... ..++.|+..|.+. +..++..|+.+|..+.. ...++.|
T Consensus 788 ---d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~-----------~~a~~~L 843 (897)
T PRK13800 788 ---DPLVRAAALAALAELGCPP---------DDVAAATAALRAS-AWQVRQGAARALAGAAA-----------DVAVPAL 843 (897)
T ss_pred ---CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCC-ChHHHHHHHHHHHhccc-----------cchHHHH
Confidence 9999999999999884321 1235677888775 78899999999987642 2345788
Q ss_pred HHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 320 SKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 320 v~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
+.++.+.+..++..|+.+|..+. .+. ...+.|...+. +.+..+|+.|...|.
T Consensus 844 ~~~L~D~~~~VR~~A~~aL~~~~---~~~---------~a~~~L~~al~-D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 844 VEALTDPHLDVRKAAVLALTRWP---GDP---------AARDALTTALT-DSDADVRAYARRALA 895 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhccC---CCH---------HHHHHHHHHHh-CCCHHHHHHHHHHHh
Confidence 88887778899999999998862 121 13556667776 668999999998875
No 58
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=3e-06 Score=79.37 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=138.8
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL 236 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 236 (407)
-++.|+.-|..++.+-++...++ ..|| +..++..|++++..+|+.|+++|..++.+....+..+...|+.+.|+..|
T Consensus 99 ~ke~ald~Le~lve~iDnAndl~-~~gg--l~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l 175 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDIDNANDLI-SLGG--LVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL 175 (342)
T ss_pred HHHHHHHHHHHHHHhhhhHHhHh-hccC--HHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence 37778777777776554444444 4564 77777799999999999999999999988776665555568899999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccC
Q 040073 237 RDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGA 314 (407)
Q Consensus 237 ~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g 314 (407)
... .+..++..|+.|++.|-.+ ......+...++...|..+|.+. .+..++.+++..+..|......-..+....+
T Consensus 176 s~~--~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~ 253 (342)
T KOG2160|consen 176 SSD--DPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLG 253 (342)
T ss_pred ccC--CCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Confidence 865 2678889999999999985 56888888888899999999884 2678899999999999875544444555444
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
....++.+.........+.++.++..+...
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~ 283 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSE 283 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence 434444444444678888888887776653
No 59
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.54 E-value=5.4e-05 Score=74.25 Aligned_cols=275 Identities=9% Similarity=0.065 Sum_probs=179.6
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073 101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV 179 (407)
Q Consensus 101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 179 (407)
..++..|..++ ..+..|...|..+...+..+.......-....|...|.+.++. ..+.-++..|..|...++ .+..+
T Consensus 104 ~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~-~~~~~~v~~L~~LL~~~~-~R~~f 181 (429)
T cd00256 104 EPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNN-DYVQTAARCLQMLLRVDE-YRFAF 181 (429)
T ss_pred HHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCc-chHHHHHHHHHHHhCCch-HHHHH
Confidence 44555666555 6778888888888755433211111111334566666655432 347778888888877765 45666
Q ss_pred hccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 180 INNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
.+.+ .++.|+.+|+.. +.+.+=++.-++.-|+..++... .....+.|+.|+++++.. ....+.+.++.+|+||
T Consensus 182 ~~~~--~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~-~~~~~~~i~~l~~i~k~s--~KEKvvRv~l~~l~Nl 256 (429)
T cd00256 182 VLAD--GVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAE-VLKRLSLIQDLSDILKES--TKEKVIRIVLAIFRNL 256 (429)
T ss_pred HHcc--CHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHH-hhccccHHHHHHHHHHhh--hhHHHHHHHHHHHHHH
Confidence 5555 499999999863 56777899999999987766444 334468999999999976 3678999999999999
Q ss_pred CCCC-------chHHHHHhcCchHHHHHHhhcc--cchhHHHHHHHH-------HHHHhcCHh-----------------
Q 040073 258 CPWG-------RNRIKAVEGGGVSVLVDLLLDV--TERRVCELMLNV-------LDLLCRCAE----------------- 304 (407)
Q Consensus 258 ~~~~-------~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~al~~-------L~~L~~~~~----------------- 304 (407)
.... .....|++.| ++.+++.|... +|+++.+..-.+ ...++..++
T Consensus 257 l~~~~~~~~~~~~~~~mv~~~-l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~ 335 (429)
T cd00256 257 ISKRVDREVKKTAALQMVQCK-VLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHK 335 (429)
T ss_pred hhcccccchhhhHHHHHHHcC-hHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCC
Confidence 9843 2345667777 56677777654 245544332222 222332222
Q ss_pred -------hHHHHHhcc-CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHH
Q 040073 305 -------GRAELLKHG-AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKT 375 (407)
Q Consensus 305 -------~r~~i~~~~-g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~ 375 (407)
|-.++-++. ..+..|+++|... ++.....|+.=+..++++.++. +..+-+.|+=..++.+|. +.++++
T Consensus 336 se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~g--r~i~~~lg~K~~vM~Lm~-h~d~~V 412 (429)
T cd00256 336 SEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRG--KDVVEQLGGKQRVMRLLN-HEDPNV 412 (429)
T ss_pred CchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccH--HHHHHHcCcHHHHHHHhc-CCCHHH
Confidence 333333322 2346677765333 3666777777788888877653 444556899889999998 569999
Q ss_pred HHHHHHHHHHH
Q 040073 376 KERAREILKLN 386 (407)
Q Consensus 376 k~~A~~lL~~l 386 (407)
|..|-..++.|
T Consensus 413 r~eAL~avQkl 423 (429)
T cd00256 413 RYEALLAVQKL 423 (429)
T ss_pred HHHHHHHHHHH
Confidence 99998888665
No 60
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.54 E-value=7.5e-08 Score=61.18 Aligned_cols=39 Identities=46% Similarity=0.973 Sum_probs=35.6
Q ss_pred CccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccc
Q 040073 12 CPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 12 Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~ 51 (407)
||||.+..++|+.++|||.|+..|+.+|+.. +...||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~-~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS-GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh-CcCCCCCC
Confidence 8999999999999999999999999999984 46789986
No 61
>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=9.7e-08 Score=99.59 Aligned_cols=72 Identities=36% Similarity=0.639 Sum_probs=67.0
Q ss_pred CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
++|++|..||...+|+|||++| +|+|.||+.|++++.. ..+.|.||.+++.+ .+.||..||..|+.|..++.
T Consensus 866 dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs--~~tdPFNR~pLt~d---~v~pn~eLK~kI~~~~~ek~ 938 (943)
T KOG2042|consen 866 DVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS--DCTDPFNREPLTED---MVSPNEELKAKIRCWIKEKR 938 (943)
T ss_pred cCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc--CCCCccccccCchh---hcCCCHHHHHHHHHHHHHhh
Confidence 5999999999999999999999 9999999999999976 66789999999996 89999999999999988765
No 62
>PHA02926 zinc finger-like protein; Provisional
Probab=98.46 E-value=1.1e-07 Score=82.35 Aligned_cols=52 Identities=17% Similarity=0.321 Sum_probs=41.7
Q ss_pred CCCCcccCccccccCcC---------ceecCCcccccHHHHHHHHhcC----CCCCCcccccccc
Q 040073 5 EVPAHFLCPISLQLMRD---------PVTVSTGITYDRVNIERWLFTC----KNNTCPVTKQVLQ 56 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~d---------Pv~~~~g~t~~r~~i~~~~~~~----~~~~cP~~~~~~~ 56 (407)
....+..|+||++..-+ ++..+|||+||..||.+|.... ....||.|++.+.
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 35678899999998644 4677899999999999999742 2467999998763
No 63
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=1.3e-07 Score=85.23 Aligned_cols=51 Identities=20% Similarity=0.459 Sum_probs=44.9
Q ss_pred CCCCc-ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 5 EVPAH-FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~-~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+|+. +.|-||++-++||--+||||-||=+||.+|..+ ..-||.|++.+.+
T Consensus 234 ~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e--k~eCPlCR~~~~p 285 (293)
T KOG0317|consen 234 SIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE--KAECPLCREKFQP 285 (293)
T ss_pred cCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc--ccCCCcccccCCC
Confidence 34444 999999999999999999999999999999976 4569999998866
No 64
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.41 E-value=2e-07 Score=61.26 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=35.3
Q ss_pred cCccccccC---cCceecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 11 LCPISLQLM---RDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 11 ~Cpi~~~~~---~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
.||+|.+.+ +.|++++|||+||..|+.++. +....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc--CCCCCCcCCCC
Confidence 389999999 467899999999999999988 34788999974
No 65
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.34 E-value=0.00015 Score=74.26 Aligned_cols=243 Identities=16% Similarity=0.154 Sum_probs=145.9
Q ss_pred CccHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHH
Q 040073 64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIE 142 (407)
Q Consensus 64 ~~n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~ 142 (407)
..|+.+|++.--+...-....-+ .-.--+..+.+.+.+++ ..+.-|+..|.++.. ++.... .++
T Consensus 53 s~~~~~Krl~yl~l~~~~~~~~~--------~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~--~~~~~~-----l~~ 117 (526)
T PF01602_consen 53 SKDLELKRLGYLYLSLYLHEDPE--------LLILIINSLQKDLNSPNPYIRGLALRTLSNIRT--PEMAEP-----LIP 117 (526)
T ss_dssp SSSHHHHHHHHHHHHHHTTTSHH--------HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-S--HHHHHH-----HHH
T ss_pred CCCHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhcc--cchhhH-----HHH
Confidence 56788888887776664421100 00113446667778877 778889999999873 343333 367
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073 143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI 222 (407)
Q Consensus 143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 222 (407)
.+.++|.+.++ -++..|+.++..+....+ +.+.. + .++.+..+|.+.++.++..|+.++..+ ...+ ....
T Consensus 118 ~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p---~~~~~-~--~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~ 187 (526)
T PF01602_consen 118 DVIKLLSDPSP--YVRKKAALALLKIYRKDP---DLVED-E--LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYK 187 (526)
T ss_dssp HHHHHHHSSSH--HHHHHHHHHHHHHHHHCH---CCHHG-G--HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHT
T ss_pred HHHHHhcCCch--HHHHHHHHHHHHHhccCH---HHHHH-H--HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhh
Confidence 88888887765 568888888877664332 22221 1 478888999888999999999999998 1111 1100
Q ss_pred hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073 223 SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 223 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
..-...+..|.+++... ++-.+...++.|..++........- ...++.+..+|.+. +..+.-.++.++..+...
T Consensus 188 ~~~~~~~~~L~~~l~~~---~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~-~~~V~~e~~~~i~~l~~~ 261 (526)
T PF01602_consen 188 SLIPKLIRILCQLLSDP---DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSS-SPSVVYEAIRLIIKLSPS 261 (526)
T ss_dssp THHHHHHHHHHHHHTCC---SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHSSS
T ss_pred hhHHHHHHHhhhccccc---chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhcc-ccHHHHHHHHHHHHhhcc
Confidence 11123455555555555 7777777777777776643322200 33455666666554 556666666666666654
Q ss_pred HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
.. ... .+++.|++++.+.++..+-.++..|..++.
T Consensus 262 ~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~ 296 (526)
T PF01602_consen 262 PE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQ 296 (526)
T ss_dssp HH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred hH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence 44 211 245566665554445566666666666664
No 66
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.34 E-value=0.00012 Score=75.15 Aligned_cols=255 Identities=15% Similarity=0.188 Sum_probs=174.2
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
++.+.+.+.+++ .+|.+|+.++..+.+.+++. +... .++.+.++|.+.+. .++..|+.++..+...+.....+
T Consensus 116 ~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~~~--~V~~~a~~~l~~i~~~~~~~~~~ 189 (526)
T PF01602_consen 116 IPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDKDP--SVVSAALSLLSEIKCNDDSYKSL 189 (526)
T ss_dssp HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHSSH--HHHHHHHHHHHHHHCTHHHHTTH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCCcc--hhHHHHHHHHHHHccCcchhhhh
Confidence 334445556666 88999999999998876652 2223 68999999976665 46889999998881112111222
Q ss_pred hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
+.. .+..|.+++...++-.+.....+|..++........- ...++.+..++++. ++.+.-.++.++..+.
T Consensus 190 ~~~----~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~---~~~V~~e~~~~i~~l~ 259 (526)
T PF01602_consen 190 IPK----LIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS---SPSVVYEAIRLIIKLS 259 (526)
T ss_dssp HHH----HHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHS
T ss_pred HHH----HHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc---ccHHHHHHHHHHHHhh
Confidence 221 5666666777788888899999988876543322211 35788899999887 8899999999999887
Q ss_pred CCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-cCCchhhHHHHHH
Q 040073 259 PWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-RVSHAASDRAVRI 337 (407)
Q Consensus 259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-~~s~~~~e~a~~~ 337 (407)
.... .-..+++.|+.+|.+. +.+++-.++..|..++... ...+ .+ ....+..+. +.+...+..++.+
T Consensus 260 ~~~~-----~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~--~~~v-~~---~~~~~~~l~~~~d~~Ir~~~l~l 327 (526)
T PF01602_consen 260 PSPE-----LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSN--PPAV-FN---QSLILFFLLYDDDPSIRKKALDL 327 (526)
T ss_dssp SSHH-----HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHC--HHHH-GT---HHHHHHHHHCSSSHHHHHHHHHH
T ss_pred cchH-----HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhccc--chhh-hh---hhhhhheecCCCChhHHHHHHHH
Confidence 6444 3335789999999875 7889999999999998854 2222 22 122333445 4457789999999
Q ss_pred HHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 338 LCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 338 L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
|..++.. +.... .++.|...++..+++..++.+...+..+...+.
T Consensus 328 L~~l~~~----~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~ 372 (526)
T PF01602_consen 328 LYKLANE----SNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFP 372 (526)
T ss_dssp HHHH--H----HHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHG
T ss_pred Hhhcccc----cchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccC
Confidence 9999952 22333 677888888544577788888888877776553
No 67
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.33 E-value=7.3e-07 Score=82.42 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=39.8
Q ss_pred CcccCccccc-cCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 8 AHFLCPISLQ-LMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 8 ~~~~Cpi~~~-~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
++..||+|.. .+..|= +.+|||+||++||.+.|.. +...||.|+.++...
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~-~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC-CCCCCCCCCCccchh
Confidence 4578999996 355552 3379999999999998865 478999999987664
No 68
>PF05536 Neurochondrin: Neurochondrin
Probab=98.31 E-value=9.7e-05 Score=75.46 Aligned_cols=238 Identities=15% Similarity=0.106 Sum_probs=156.3
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH---HhHhhccchhhHHHHHHHHhcC-------ChhHHHHHHHHHH
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYL---KSIVINNGEEFLESLMRVLKCG-------NYQSRSYAIMLLK 210 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~i~~~gg~~i~~Lv~lL~~~-------~~~~~~~a~~~L~ 210 (407)
++.-+++|+..++. .+-.++..+..+..+++.. ++.+-++=| .+.|-++|.++ ....+.-|..+|.
T Consensus 7 l~~c~~lL~~~~D~--~rfagL~lvtk~~~~~~~~~~~~~~v~~aig--~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~ 82 (543)
T PF05536_consen 7 LEKCLSLLKSADDT--ERFAGLLLVTKLLDADDEDSQTRRRVFEAIG--FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA 82 (543)
T ss_pred HHHHHHHhccCCcH--HHHHHHHHHHHcCCCchhhHHHHHHHHHhcC--hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence 45556778777652 3778888888877765422 223444432 78888999873 3556778888899
Q ss_pred HhhccCCchhhhhchhhhHHHHHHHcccCCCCCH-HHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHH
Q 040073 211 SIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQ-QASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVC 289 (407)
Q Consensus 211 ~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~ 289 (407)
.++..++....- .-.+-||.|++.+.+. +. ++...+..+|..++.+++++..+++.|+|+.|.+.+.++ +...
T Consensus 83 ~f~~~~~~a~~~-~~~~~IP~Lle~l~~~---s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~--~~~~ 156 (543)
T PF05536_consen 83 AFCRDPELASSP-QMVSRIPLLLEILSSS---SDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQ--SFQM 156 (543)
T ss_pred HHcCChhhhcCH-HHHHHHHHHHHHHHcC---CchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhC--cchH
Confidence 988765543221 1135699999999887 55 999999999999999999999999999999999999884 5678
Q ss_pred HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc----CCchhhHHHHHHHHHHhccCC---chHHHHHHHHhChHHH
Q 040073 290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR----VSHAASDRAVRILCSVCKFSA---TARVLQEMLQVGVVSK 362 (407)
Q Consensus 290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~----~s~~~~e~a~~~L~~l~~~~~---~~~~~~~~~~~g~i~~ 362 (407)
+.|+.+|.++..... ....-++...+..++..|.+ .....+-..+..|..+-...+ .......---.....-
T Consensus 157 E~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~g 235 (543)
T PF05536_consen 157 EIALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKG 235 (543)
T ss_pred HHHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHH
Confidence 999999999877433 21222222333344333322 234455666777777766542 0000111111223344
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 363 LCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 363 Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
|..+|++.-+++.|..|-.+...+-+.
T Consensus 236 l~~iL~sr~~~~~R~~al~Laa~Ll~~ 262 (543)
T PF05536_consen 236 LRDILQSRLTPSQRDPALNLAASLLDL 262 (543)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 556677777888888877766666554
No 69
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.31 E-value=0.00033 Score=74.48 Aligned_cols=256 Identities=18% Similarity=0.137 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcC--cHHHHHHHhhccCC--------------CCchHHHHHHHHHhcCCChhHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAG--AIEFLATIITKSDA--------------GSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G--~i~~Lv~lL~~~~~--------------~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
..|..|++.|..+++.-+...+.....| .++.+..++....+ ...--..|..+|-.++.+=..
T Consensus 264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g- 342 (1075)
T KOG2171|consen 264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGG- 342 (1075)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCCh-
Confidence 7788999999999877554444444433 46666666643211 011234556666666654321
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
+.+.- . .++.+-.+|.+.++.-|..+..+|..++.... ......-..+++..+..|++. ++.++.+|+.|+.
T Consensus 343 -~~v~p-~--~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~~l~~Il~~Vl~~l~Dp---hprVr~AA~naig 414 (1075)
T KOG2171|consen 343 -KQVLP-P--LFEALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIGNLPKILPIVLNGLNDP---HPRVRYAALNAIG 414 (1075)
T ss_pred -hhehH-H--HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHhhcCCC---CHHHHHHHHHHHH
Confidence 22222 2 67788888899999999999999999875543 223333345677777888888 9999999999999
Q ss_pred HhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHH----HHHc-CCch
Q 040073 256 ELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSK----KILR-VSHA 329 (407)
Q Consensus 256 ~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~----~l~~-~s~~ 329 (407)
.++.+ .+...+--.+-.+|.|+..+.+..++.+...|+.+|.+....-. +..+.. .++.+++ .+.. +++.
T Consensus 415 Q~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~-~~~l~p---YLd~lm~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 415 QMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD-KSILEP---YLDGLMEKKLLLLLQSSKPY 490 (1075)
T ss_pred hhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc-HHHHHH---HHHHHHHHHHHHHhcCCchh
Confidence 99985 33444445556778899999876567899999999998887433 323322 3444444 3333 4588
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.+|.++.++..++....+. ....- .-.+|.|..+|+....+..|.-..+.+
T Consensus 491 v~e~vvtaIasvA~AA~~~-F~pY~--d~~Mp~L~~~L~n~~~~d~r~Lrgktm 541 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQEK-FIPYF--DRLMPLLKNFLQNADDKDLRELRGKTM 541 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhh-hHhHH--HHHHHHHHHHHhCCCchhhHHHHhhHH
Confidence 9999999999999644332 22221 246777888888554344444444433
No 70
>PF05536 Neurochondrin: Neurochondrin
Probab=98.27 E-value=5.9e-05 Score=77.01 Aligned_cols=201 Identities=16% Similarity=0.192 Sum_probs=140.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc----hhhhhchhhhHHHHHHHcccCCC----CCHHHHHHHHHHHHHh
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP----FQLISVKQEFFTEIVNVLRDHHQ----FSQQASKAALKLLVEL 257 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~~~~A~~aL~~L 257 (407)
.++..+.+|++.+.+-|=.+...+..+....+. ++.+...-| .+.|-++|+.+.. .....+.-|+..|..+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 477778888888866666777777787765542 234556556 6888899987411 1356788889999999
Q ss_pred CCCCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 258 CPWGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 258 ~~~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
|..++. ...+++ -||.|++.+...++.++.+.|+.+|..++.+++|+..+++ .|+|+.|...+.+ .+...+.|+
T Consensus 85 ~~~~~~a~~~~~~~--~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~-~g~v~~L~ei~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CRDPELASSPQMVS--RIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLE-SGAVPALCEIIPN-QSFQMEIAL 160 (543)
T ss_pred cCChhhhcCHHHHH--HHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHh-cCCHHHHHHHHHh-CcchHHHHH
Confidence 996653 355555 5999999998873448999999999999999999999998 5899999997765 678899999
Q ss_pred HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
.+|.+++.....+ ... -....+..++.-|...-+....+.+..++..|....+..|
T Consensus 161 ~lL~~Lls~~~~~-~~~--~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~ 216 (543)
T PF05536_consen 161 NLLLNLLSRLGQK-SWA--EDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSP 216 (543)
T ss_pred HHHHHHHHhcchh-hhh--hhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCC
Confidence 9999998764421 111 1122333333334333233344555666777777655554
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.21 E-value=3.1e-05 Score=62.54 Aligned_cols=152 Identities=16% Similarity=0.091 Sum_probs=119.2
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r 306 (407)
|.+..||.=..+. .+.++++....-|.|.+-++.|-..+.+..+++..+..|... +..+++.+.+.|.|+|-...+.
T Consensus 16 ~Ylq~LV~efq~t--t~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 16 EYLQHLVDEFQTT--TNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHHh--ccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHH
Confidence 5677888777665 488999999999999999999999999999999999999886 8899999999999999999888
Q ss_pred HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
.-|++ ++|+|..+..+.+.....-..|+..|..++...+. .+.++..--.+.-+.++-.+ .+..-+--|...|+.
T Consensus 93 ~~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt--~r~ell~p~Vv~~v~r~~~s-~s~~~rnLa~~fl~~ 167 (173)
T KOG4646|consen 93 KFIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERT--ERDELLSPAVVRTVQRWRES-KSHDERNLASAFLDK 167 (173)
T ss_pred HHHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccc--hhHHhccHHHHHHHHHHHHH-hhHHHHHHHHHHHHh
Confidence 88777 78999998877665677788899999999975443 57776665555555444332 244445555555543
No 72
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=98.20 E-value=1.9e-06 Score=85.09 Aligned_cols=72 Identities=33% Similarity=0.584 Sum_probs=64.9
Q ss_pred CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+||++|..|+...+|+|||+++ +|.|.||+.|..++-. ..+.|.-+-|++-+ +.+||-.||+.|-.+....+
T Consensus 850 DvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls--d~tDPFNRmPLtld---dVtpn~eLrekIn~f~k~k~ 922 (929)
T COG5113 850 DVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS--DGTDPFNRMPLTLD---DVTPNAELREKINRFYKCKG 922 (929)
T ss_pred CCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc--CCCCccccCCCchh---hcCCCHHHHHHHHHHHhccc
Confidence 5999999999999999999997 7899999999999976 56789999999886 88999999999999876554
No 73
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.19 E-value=1.4e-06 Score=63.98 Aligned_cols=44 Identities=32% Similarity=0.619 Sum_probs=34.5
Q ss_pred CCCcccCccccccCcCc-------------eecCCcccccHHHHHHHHhcCCCCCCcccc
Q 040073 6 VPAHFLCPISLQLMRDP-------------VTVSTGITYDRVNIERWLFTCKNNTCPVTK 52 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~ 52 (407)
++++- |+||++.|.|| +...|||.|-..||++|++. +.+||.|+
T Consensus 17 ~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR 73 (73)
T PF12678_consen 17 IADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ--NNTCPLCR 73 (73)
T ss_dssp SCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT--SSB-TTSS
T ss_pred CcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc--CCcCCCCC
Confidence 44444 99999999544 34579999999999999975 66999995
No 74
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.16 E-value=0.00072 Score=65.76 Aligned_cols=264 Identities=15% Similarity=0.151 Sum_probs=177.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
+.+..+.+.+|.+..+ .+.-..+.+.+.--.++..|..+.....++++|+..+..+..-..+.+. +- .+ .+..++
T Consensus 40 ~vraa~yRilRy~i~d-~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~-~~-~~--vvralv 114 (371)
T PF14664_consen 40 EVRAAGYRILRYLISD-EESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE-IP-RG--VVRALV 114 (371)
T ss_pred HHHHHHHHHHHHHHcC-HHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc-CC-HH--HHHHHH
Confidence 8888899999999886 6778888888877778888887765555699999988776543222222 22 22 899999
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
.+..+.+...+..+..+|..++-.+.. ++...|++..|++.+.++ ..+..+..+.++..+...+..|+-+...-
T Consensus 115 aiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~---~~~~~~~l~~~lL~lLd~p~tR~yl~~~~ 188 (371)
T PF14664_consen 115 AIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDG---SFSISESLLDTLLYLLDSPRTRKYLRPGF 188 (371)
T ss_pred HHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhc---cHhHHHHHHHHHHHHhCCcchhhhhcCCc
Confidence 999999999999999999999866543 444467799999998887 66788899999999998888887665433
Q ss_pred chHHHHHHhhcc------cch--hHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 272 GVSVLVDLLLDV------TER--RVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 272 ~v~~Lv~lL~~~------~~~--~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
-+..++.-+.+. ++. +....+..++..+-.+=.|--.+..+. .|+..||..|...+++.++.-+.++..+-
T Consensus 189 dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 189 DLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred cHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 466666665443 122 223344444444433323332222222 45666666555444555555555554443
Q ss_pred ccCC--------------------------------------------c------hHHHHHHHHhChHHHHHHHHhcCCC
Q 040073 343 KFSA--------------------------------------------T------ARVLQEMLQVGVVSKLCLVLQVDAS 372 (407)
Q Consensus 343 ~~~~--------------------------------------------~------~~~~~~~~~~g~i~~Ll~ll~~~~~ 372 (407)
.-.. + .-.....+++|.++.|+.+.....+
T Consensus 269 rik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~~d 348 (371)
T PF14664_consen 269 RIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESSED 348 (371)
T ss_pred CCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcCCC
Confidence 2110 0 0112335678999999999997768
Q ss_pred HHHHHHHHHHHHHH
Q 040073 373 VKTKERAREILKLN 386 (407)
Q Consensus 373 ~~~k~~A~~lL~~l 386 (407)
+....||.-+|.-+
T Consensus 349 ~~l~~KAtlLL~el 362 (371)
T PF14664_consen 349 SSLSRKATLLLGEL 362 (371)
T ss_pred chHHHHHHHHHHHH
Confidence 89999999888643
No 75
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=98.15 E-value=3.4e-05 Score=62.26 Aligned_cols=131 Identities=17% Similarity=0.136 Sum_probs=105.9
Q ss_pred hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073 186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~ 264 (407)
.+..||.-.+. .+.+.++....-|.|.+.+ +.+.....+..++...|.-|... +...++-+...|+|+|..+.|+
T Consensus 17 Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~---ne~LvefgIgglCNlC~d~~n~ 92 (173)
T KOG4646|consen 17 YLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQ---NELLVEFGIGGLCNLCLDKTNA 92 (173)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcc---cHHHHHHhHHHHHhhccChHHH
Confidence 56677776665 6899999999999999755 45555555568899999999988 9999999999999999999999
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcC
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
+.|++++++|.++..+.+. .....-.++.+|..|+-.+. .|..+.. |..|+.+.+.
T Consensus 93 ~~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~r~ 149 (173)
T KOG4646|consen 93 KFIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQRW 149 (173)
T ss_pred HHHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHHHH
Confidence 9999999999999999886 67778889999999987543 3444433 5667766654
No 76
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=4.7e-07 Score=83.63 Aligned_cols=68 Identities=24% Similarity=0.340 Sum_probs=54.8
Q ss_pred CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073 6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~ 76 (407)
+--+|.||||+++++--.+.. |+|.||+.||-.-+.. +++.||.|++.+...- .|.+...+-.+|.+.
T Consensus 40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~-gn~ecptcRk~l~Skr--sLr~Dp~fdaLis~i 108 (381)
T KOG0311|consen 40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS-GNNECPTCRKKLVSKR--SLRIDPNFDALISKI 108 (381)
T ss_pred hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh-cCCCCchHHhhccccc--cCCCCccHHHHHHHH
Confidence 445789999999999999885 9999999999999987 5899999999875531 666665565565544
No 77
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.14 E-value=1.2e-06 Score=80.46 Aligned_cols=68 Identities=21% Similarity=0.386 Sum_probs=50.4
Q ss_pred CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccccccc-CCCCCCccHHHHHHHHH
Q 040073 6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQET-DLTSTTPNHTLRRLIQA 75 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~-~~~~l~~n~~l~~~I~~ 75 (407)
+=...+|++|..+|.|+-|+. |=|||||+||-+++.. ..+||.|+..+... +.-.+.+.++|+.++..
T Consensus 12 ~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~--~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyK 81 (331)
T KOG2660|consen 12 LNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE--SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYK 81 (331)
T ss_pred cccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH--hccCCccceeccCccccccCCcchHHHHHHHH
Confidence 334579999999999999885 9999999999999986 88999998776441 00023344566655533
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=98.13 E-value=0.00057 Score=66.48 Aligned_cols=251 Identities=16% Similarity=0.138 Sum_probs=170.9
Q ss_pred HHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-
Q 040073 118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC- 196 (407)
Q Consensus 118 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~- 196 (407)
+..|..+-+..+..|..+.-.-..+.+..++-+++. .++-.+..++..+..+.+..+.+. +.+ .--.++.-|..
T Consensus 4 ~N~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~--~vraa~yRilRy~i~d~~~l~~~~-~l~--id~~ii~SL~~~ 78 (371)
T PF14664_consen 4 ANDLVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSK--EVRAAGYRILRYLISDEESLQILL-KLH--IDIFIIRSLDRD 78 (371)
T ss_pred HHHHHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcH--HHHHHHHHHHHHHHcCHHHHHHHH-HcC--CchhhHhhhccc
Confidence 345556666677777776666666666655544443 568899999998887776544444 444 34455666765
Q ss_pred -CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH
Q 040073 197 -GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV 275 (407)
Q Consensus 197 -~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~ 275 (407)
.+..-|++|.+.++.+.........+ ..|++..+|.+..+. ++..+..++.+|..|+..+ -..+++.|++..
T Consensus 79 ~~~~~ER~QALkliR~~l~~~~~~~~~--~~~vvralvaiae~~---~D~lr~~cletL~El~l~~--P~lv~~~gG~~~ 151 (371)
T PF14664_consen 79 NKNDVEREQALKLIRAFLEIKKGPKEI--PRGVVRALVAIAEHE---DDRLRRICLETLCELALLN--PELVAECGGIRV 151 (371)
T ss_pred CCChHHHHHHHHHHHHHHHhcCCcccC--CHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHhhC--HHHHHHcCCHHH
Confidence 35667899999999998775544444 348899999999887 8999999999999999844 346678999999
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-------Cc--hhhHHHHHHHHHHhccCC
Q 040073 276 LVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-------SH--AASDRAVRILCSVCKFSA 346 (407)
Q Consensus 276 Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-------s~--~~~e~a~~~L~~l~~~~~ 346 (407)
|++.+.++ ..++.+..+.++-.+-.++..|.-+... --+..++.-+.+. +. ..-+.+..++..+-+...
T Consensus 152 L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~ 229 (371)
T PF14664_consen 152 LLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP 229 (371)
T ss_pred HHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC
Confidence 99999886 4558899999999999999988866552 3455555544433 11 122334444444443222
Q ss_pred chHHHHHH-HHhChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 347 TARVLQEM-LQVGVVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 347 ~~~~~~~~-~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
. ...-. -+..++..|+..|+.+ +++.|+..-.++--
T Consensus 230 G--Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~d 266 (371)
T PF14664_consen 230 G--LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFD 266 (371)
T ss_pred c--eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 1 11111 1236899999999964 77788776665533
No 79
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=1.5e-06 Score=77.41 Aligned_cols=49 Identities=18% Similarity=0.335 Sum_probs=43.1
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHH-HHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIER-WLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~-~~~~~~~~~cP~~~~~~~~ 57 (407)
.+|.|+||.+.+.+|+-++|||.||=+||-. |-.+ ...+||.|++....
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~-k~~~CplCRak~~p 263 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK-KYEFCPLCRAKVYP 263 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhh-ccccCchhhhhccc
Confidence 4799999999999999999999999999999 7765 36789999986543
No 80
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=98.09 E-value=4e-06 Score=75.49 Aligned_cols=65 Identities=22% Similarity=0.363 Sum_probs=54.2
Q ss_pred ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcccccc--ccccCCCCCCccHHHHHHHHHHHHh
Q 040073 10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQV--LQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~--~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
+.||+|+.+++.|+-+ +|||+||..||+..+... .+.||.|... +- + .+.|....+..|+.+...
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~ds-Df~CpnC~rkdvll-d---~l~pD~dk~~EvE~~lkk 342 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDS-DFKCPNCSRKDVLL-D---GLTPDIDKKLEVEKALKK 342 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhhc-cccCCCcccccchh-h---ccCccHHHHHHHHHHHHH
Confidence 8999999999999977 799999999999988764 8999999652 32 2 678888888888887663
No 81
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0061 Score=58.79 Aligned_cols=244 Identities=15% Similarity=0.182 Sum_probs=169.1
Q ss_pred HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh------hH---HHhHhhccchh
Q 040073 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE------SY---LKSIVINNGEE 185 (407)
Q Consensus 115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~------~~---~~~~i~~~gg~ 185 (407)
...++.++.+|.- |+.--.+++.++++.|+.+|.+... ++-...+..|..|+-.+ +. ....+.+++
T Consensus 102 hd~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNt--DI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~-- 176 (536)
T KOG2734|consen 102 HDIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHENT--DIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQ-- 176 (536)
T ss_pred HHHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCc--hhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhcc--
Confidence 4577788888876 7877789999999999999999877 44667777777776322 21 223344433
Q ss_pred hHHHHHHHHhcCC------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGN------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
+++.|++-+..-+ .....++...+.|+....+.-...+..+|.+.-|...+..... -..-..-|...|.-+..
T Consensus 177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~-f~aNk~YasEiLaillq 255 (536)
T KOG2734|consen 177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAA-FDANKQYASEILAILLQ 255 (536)
T ss_pred HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccC-cchhHHHHHHHHHHHhc
Confidence 8999988776533 3334567777888877765544444445877777765543311 22344556666666666
Q ss_pred C-CchHHHHHhcCchHHHHHHhhc---c-----cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchh
Q 040073 260 W-GRNRIKAVEGGGVSVLVDLLLD---V-----TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAA 330 (407)
Q Consensus 260 ~-~~n~~~~v~~G~v~~Lv~lL~~---~-----~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~ 330 (407)
+ ++|+...-...+|..+++-+.- . ...+.-++-...|..+-..+++|..+.. +.|+.. +.+|++.....
T Consensus 256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqL-m~Lmlr~Kk~s 333 (536)
T KOG2734|consen 256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQL-MNLMLREKKVS 333 (536)
T ss_pred cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHH-HHHHHHHHHHh
Confidence 4 4588888888999999987753 1 1345667788888888889999999998 456664 44566667778
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073 331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV 366 (407)
Q Consensus 331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l 366 (407)
+..++++|-....+......+..-++.+|+.....+
T Consensus 334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~ 369 (536)
T KOG2734|consen 334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPL 369 (536)
T ss_pred hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHH
Confidence 889999999998877655567777777777766544
No 82
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.4e-06 Score=81.42 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=57.6
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCC--CCCCccHHHHHHHHHHHHh
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDL--TSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~--~~l~~n~~l~~~I~~~~~~ 79 (407)
+..++.+|-|-||...+.+||+++|||+||+.||.+.... ...||.|+.++.+-.+ ....+|+.++.+|..|+..
T Consensus 78 ~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~--~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~ 154 (398)
T KOG4159|consen 78 PEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ--ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG 154 (398)
T ss_pred CccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc--CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence 3457899999999999999999999999999999997753 7789999988764110 0222366666777777654
No 83
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.02 E-value=3.5e-06 Score=81.83 Aligned_cols=72 Identities=17% Similarity=0.288 Sum_probs=54.7
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccccCCCCCCcc----HHHHHHHHHHHHh
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQETDLTSTTPN----HTLRRLIQAWCTI 79 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~~~~~~l~~n----~~l~~~I~~~~~~ 79 (407)
+.+..||||++...=|+.+.|||.||=.||.++|... +...||.|+..+..+ ++.|- ..-+..++.++..
T Consensus 184 ~t~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k---dl~pv~~e~~qkke~l~~~~~~ 260 (513)
T KOG2164|consen 184 STDMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK---DLLPVFIEDDQKKEELKLHQDP 260 (513)
T ss_pred CcCCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc---ceeeeeeccccccHHHHHHhcc
Confidence 3478999999999999999999999999999999753 457899999887653 33332 2224556666666
Q ss_pred cc
Q 040073 80 NA 81 (407)
Q Consensus 80 ~~ 81 (407)
|+
T Consensus 261 ng 262 (513)
T KOG2164|consen 261 NG 262 (513)
T ss_pred cC
Confidence 66
No 84
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=97.99 E-value=1.4e-05 Score=75.79 Aligned_cols=51 Identities=22% Similarity=0.446 Sum_probs=45.4
Q ss_pred ccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc
Q 040073 10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~ 65 (407)
+.|.|++++-++||+.+ +||.|||+-|+++..+ +.+||+++++++.+ ++++
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e--~G~DPIt~~pLs~e---elV~ 52 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE--TGKDPITNEPLSIE---ELVE 52 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH--cCCCCCCCCcCCHH---Heee
Confidence 57999999999999887 9999999999999976 78899999999875 5554
No 85
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.99 E-value=8.1e-06 Score=52.68 Aligned_cols=40 Identities=33% Similarity=0.344 Sum_probs=36.9
Q ss_pred CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
++++..+++.|+||.|+++|.+. +.++++.|+++|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 2 PENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA 41 (41)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence 56899999999999999999986 89999999999999974
No 86
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.98 E-value=0.00037 Score=69.94 Aligned_cols=147 Identities=16% Similarity=0.147 Sum_probs=112.0
Q ss_pred hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCch
Q 040073 195 KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGV 273 (407)
Q Consensus 195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v 273 (407)
-..+.+.+..|+.++.+++..-..-+.-.....++.+||.++.++ +..+...++++|.||.. ..+-|..+++.|+|
T Consensus 387 ~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp---~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 387 PIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP---EIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc---chhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 345777777777777777643221111133345789999999887 88999999999999998 56789999999999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH--HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC
Q 040073 274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA--ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA 346 (407)
Q Consensus 274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~--~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~ 346 (407)
..|.+++.+. +..++..++++|.++.-+.+... +... .-+-..++.++.+.....+|.+..+|.|+.+++.
T Consensus 464 d~l~s~~~~~-~~n~r~~~~~~Lr~l~f~~de~~k~~~~~-ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~ 536 (678)
T KOG1293|consen 464 DILESMLTDP-DFNSRANSLWVLRHLMFNCDEEEKFQLLA-KIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR 536 (678)
T ss_pred HHHHHHhcCC-CchHHHHHHHHHHHHHhcchHHHHHHHHH-HhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence 9999999986 88999999999999987655433 3333 2234456665666678899999999999998754
No 87
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.98 E-value=0.00049 Score=70.33 Aligned_cols=216 Identities=18% Similarity=0.157 Sum_probs=158.9
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCC-
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVAD- 217 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~- 217 (407)
|+.|+.-+.+..-..+ +..|+..|-.++. ..+..++..| +++|+..|+.+ +++....+..++.++...++
T Consensus 24 I~kLcDRvessTL~eD-RR~A~rgLKa~sr---kYR~~Vga~G---mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~ 96 (970)
T KOG0946|consen 24 IEKLCDRVESSTLLED-RRDAVRGLKAFSR---KYREEVGAQG---MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS 96 (970)
T ss_pred HHHHHHHHhhccchhh-HHHHHHHHHHHHH---HHHHHHHHcc---cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence 4444444444332223 8888888887764 3466666554 99999999874 89999999999999987764
Q ss_pred ------ch----------hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHh-cCchHHHHH
Q 040073 218 ------PF----------QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NRIKAVE-GGGVSVLVD 278 (407)
Q Consensus 218 ------~~----------~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~-~G~v~~Lv~ 278 (407)
.. ..+....+.|..|+..+... +--++..|...|.+|.+..+ -+..+.. --+|..|+.
T Consensus 97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~---DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd 173 (970)
T KOG0946|consen 97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF---DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD 173 (970)
T ss_pred hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh---chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence 12 12234467888899999887 88999999999999887544 5555554 457999999
Q ss_pred HhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC----chhhHHHHHHHHHHhccCCchHHHHHH
Q 040073 279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS----HAASDRAVRILCSVCKFSATARVLQEM 354 (407)
Q Consensus 279 lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s----~~~~e~a~~~L~~l~~~~~~~~~~~~~ 354 (407)
+|.+. ...++..++-.|..|......-++++.-..+...|..++.... .-+-+-|+..|.+|-+.+.. -..--
T Consensus 174 lL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S--NQ~~F 250 (970)
T KOG0946|consen 174 LLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS--NQNFF 250 (970)
T ss_pred HHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc--hhhHH
Confidence 99986 5678889999999999987777777776778888988775531 35688899999999986543 13333
Q ss_pred HHhChHHHHHHHHhc
Q 040073 355 LQVGVVSKLCLVLQV 369 (407)
Q Consensus 355 ~~~g~i~~Ll~ll~~ 369 (407)
.+.+-||+|..+|..
T Consensus 251 rE~~~i~rL~klL~~ 265 (970)
T KOG0946|consen 251 REGSYIPRLLKLLSV 265 (970)
T ss_pred hccccHHHHHhhcCc
Confidence 447889999977754
No 88
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.93 E-value=0.0042 Score=59.90 Aligned_cols=243 Identities=16% Similarity=0.208 Sum_probs=167.7
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC---------hhHHHHHHhcCcHHHHHHHhhccCCCC----chHHHHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS---------ERNRSCLEAAGAIEFLATIITKSDAGS----DECDEAL 162 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~---------~~~r~~i~~~G~i~~Lv~lL~~~~~~~----~~~~~a~ 162 (407)
-..|+.++..|...+ +.....+.-|+.+...+ ...-+.+++.++++.|++-+..-+.+. ....+++
T Consensus 124 ln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkeea~gv~~~L 203 (536)
T KOG2734|consen 124 LNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEEADGVHNTL 203 (536)
T ss_pred hccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhhhhhhHHHH
Confidence 456778888887766 77777777777776442 135678888999999999998766532 1255667
Q ss_pred HHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHccc-
Q 040073 163 SILYHLNVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRD- 238 (407)
Q Consensus 163 ~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~- 238 (407)
.++-|+..-.......+.+.| .+..|...+.. .-...+..|..+|.-+..... ++...+.-.| |..|++-+..
T Consensus 204 ~vveNlv~~r~~~~~~~~e~~--ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~G-iD~lL~~la~y 280 (536)
T KOG2734|consen 204 AVVENLVEVRPAICTEIVEQG--LLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDG-IDVLLRQLAVY 280 (536)
T ss_pred HHHHHHHhccHHHHHHHHHhh--HHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCccc-HHHHHhhcchh
Confidence 777777665555555566554 56665554432 244567899999998877665 5555555444 7777776541
Q ss_pred --CCCC---CHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh---hHHHHH
Q 040073 239 --HHQF---SQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE---GRAELL 310 (407)
Q Consensus 239 --~~~~---~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~---~r~~i~ 310 (407)
.+|. ..+..++-..+|+.+...+.|+..++...++....-+++.. ...+..++.+|.....+++ +...++
T Consensus 281 k~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~K--k~sr~SalkvLd~am~g~~gt~~C~kfV 358 (536)
T KOG2734|consen 281 KRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREK--KVSRGSALKVLDHAMFGPEGTPNCNKFV 358 (536)
T ss_pred hccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHH--HHhhhhHHHHHHHHHhCCCchHHHHHHH
Confidence 1111 24688888899999999999999999987787666666653 4567789999998877654 567778
Q ss_pred hccCchHHHHHHHHc---------CC-chhhHHHHHHHHHHhccC
Q 040073 311 KHGAGLAVVSKKILR---------VS-HAASDRAVRILCSVCKFS 345 (407)
Q Consensus 311 ~~~g~i~~Lv~~l~~---------~s-~~~~e~a~~~L~~l~~~~ 345 (407)
+ .+|...+.-..++ .+ ....|+..++||++-...
T Consensus 359 e-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~~ 402 (536)
T KOG2734|consen 359 E-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRNL 402 (536)
T ss_pred H-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHhc
Confidence 7 5677777665552 22 456788888998887643
No 89
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.93 E-value=6.2e-06 Score=80.69 Aligned_cols=70 Identities=27% Similarity=0.497 Sum_probs=55.3
Q ss_pred CCCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc-cHHHHHHHHHHHHh
Q 040073 5 EVPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP-NHTLRRLIQAWCTI 79 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~-n~~l~~~I~~~~~~ 79 (407)
.+.+++.||+|..++.||+.. .|||.||+.||.+|... +..||.|.+..... ...+ -..+++.+..|-..
T Consensus 17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~--~~~cp~~~~~~~~~---~~~~~~~~~~~~~~~l~i~ 88 (391)
T KOG0297|consen 17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN--HQKCPVCRQELTQA---EELPVPRALRRELLKLPIR 88 (391)
T ss_pred CCcccccCccccccccCCCCCCCCCCcccccccchhhcc--CcCCcccccccchh---hccCchHHHHHHHHhcccc
Confidence 367779999999999999984 99999999999999976 78999998876542 4444 24556777666443
No 90
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=4.5e-06 Score=85.00 Aligned_cols=48 Identities=15% Similarity=0.324 Sum_probs=44.4
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
++||+|..=++|-|++-|||.||..||+..+.. +...||.|+..|..+
T Consensus 644 LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et-RqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 644 LKCSVCNTRWKDAVITKCGHVFCEECVQTRYET-RQRKCPKCNAAFGAN 691 (698)
T ss_pred eeCCCccCchhhHHHHhcchHHHHHHHHHHHHH-hcCCCCCCCCCCCcc
Confidence 699999999999999999999999999999876 488999999998775
No 91
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=1.6e-05 Score=51.31 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=35.9
Q ss_pred ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC
Q 040073 128 SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN 169 (407)
Q Consensus 128 ~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 169 (407)
+++++..+++.|++|.|+++|.+.+. .++++|+++|.||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~--~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDP--EVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSH--HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCH--HHHHHHHHHHHHHh
Confidence 47899999999999999999996665 57999999999986
No 92
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.85 E-value=0.00053 Score=68.85 Aligned_cols=151 Identities=17% Similarity=0.161 Sum_probs=113.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
.....|+.++.+++..-..-|..+....++.+|+++|..++. -++..++++|.|+.+.=.+.+..+...| +|+.+.
T Consensus 392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~--~i~~~~lgai~NlVmefs~~kskfl~~n--gId~l~ 467 (678)
T KOG1293|consen 392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEI--MIMGITLGAICNLVMEFSNLKSKFLRNN--GIDILE 467 (678)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcch--hHHHHHHHHHHHHHhhcccHHHHHHHcC--cHHHHH
Confidence 555667778888776655566666678899999999966655 3588899999998875555565555566 499999
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHh
Q 040073 192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVE 269 (407)
Q Consensus 192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~ 269 (407)
..+.+.+..+|.++.|+|+++...+++.....-... ....++.+.+++ ++.+++.++..|+||..+. +...-+++
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~---d~~Vqeq~fqllRNl~c~~~~svdfll~ 544 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP---DWAVQEQCFQLLRNLTCNSRKSVDFLLE 544 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC---CHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence 999999999999999999999887776554433223 234566777777 9999999999999998753 33333444
No 93
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.001 Score=70.92 Aligned_cols=232 Identities=11% Similarity=0.112 Sum_probs=143.8
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh-HHHhH
Q 040073 101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES-YLKSI 178 (407)
Q Consensus 101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~ 178 (407)
+.+=+.|.+++ ..|+.|+..|..++..+.+.-.... .-+++.++..|.+++. .|+..|+.++..++.+=. ...+.
T Consensus 351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dphp--rVr~AA~naigQ~stdl~p~iqk~ 427 (1075)
T KOG2171|consen 351 EALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHP--RVRYAALNAIGQMSTDLQPEIQKK 427 (1075)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCH--HHHHHHHHHHHhhhhhhcHHHHHH
Confidence 33444556776 8899999999999887654322211 3456777788877766 579999999999886432 22232
Q ss_pred hhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH-cccCCCCCHHHHHHHHHHHHH
Q 040073 179 VINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV-LRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~ 256 (407)
-.+ ..++.|+..+.+ ++..++.+|+.++.+++.........---.+.+..++.+ ++++ ++.+++.++.+|..
T Consensus 428 ~~e---~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~---~~~v~e~vvtaIas 501 (1075)
T KOG2171|consen 428 HHE---RLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS---KPYVQEQAVTAIAS 501 (1075)
T ss_pred HHH---hccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC---chhHHHHHHHHHHH
Confidence 222 256788888877 588999999999999987665544332223455533333 4455 89999999999998
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc--CHhhHHHHHhccCchHHHHHHHHcC-------C
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR--CAEGRAELLKHGAGLAVVSKKILRV-------S 327 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~--~~~~r~~i~~~~g~i~~Lv~~l~~~-------s 327 (407)
.+..-.....--=.-.+|.|...|....+.+.++....++..++. ..-||.++...+ ..+++++... +
T Consensus 502 vA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a---~eliqll~~~~~~~~~~d 578 (1075)
T KOG2171|consen 502 VADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLA---EELIQLLLELQGSDQDDD 578 (1075)
T ss_pred HHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhH---HHHHHHHHhhcccchhhc
Confidence 876333222111123577777888765334444444444443332 134566666543 2344433332 3
Q ss_pred chhhHHHHHHHHHHhcc
Q 040073 328 HAASDRAVRILCSVCKF 344 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~ 344 (407)
...+++-......+|+-
T Consensus 579 d~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 579 DPLRSYMIAFWARMCRI 595 (1075)
T ss_pred cccHHHHHHHHHHHHHH
Confidence 45567777777777764
No 94
>PTZ00429 beta-adaptin; Provisional
Probab=97.80 E-value=0.015 Score=61.61 Aligned_cols=249 Identities=8% Similarity=0.009 Sum_probs=154.0
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
.+++..+-+.|.+.+ ..+..+++.+-.....+.+.- -+.+-+++++.+.+- ..+.-..-.|.+.+..+++
T Consensus 31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~DvS------~LF~dVvk~~~S~d~--elKKLvYLYL~~ya~~~pe- 101 (746)
T PTZ00429 31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGRDVS------YLFVDVVKLAPSTDL--ELKKLVYLYVLSTARLQPE- 101 (746)
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCch------HHHHHHHHHhCCCCH--HHHHHHHHHHHHHcccChH-
Confidence 456677777887766 667788886655543322211 134556676665543 2344444455555544332
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
..+. ++..|.+=+.+.++.+|..|.+++.++-. .+ +.. -.++++.+.+.+. ++-+++.|+-++.
T Consensus 102 -lalL-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~-~~----i~e--~l~~~lkk~L~D~---~pYVRKtAalai~ 165 (746)
T PTZ00429 102 -KALL-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV-SS----VLE--YTLEPLRRAVADP---DPYVRKTAAMGLG 165 (746)
T ss_pred -HHHH-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc-HH----HHH--HHHHHHHHHhcCC---CHHHHHHHHHHHH
Confidence 1222 47788888888999999999998888732 11 222 2567778888887 9999999999999
Q ss_pred HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
.+-..++. .+.+.|.++.|.++|.+. ++.++..|+.+|..+......+-.+.. ..+..++..+.+.++..+-..+
T Consensus 166 Kly~~~pe--lv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~~~~~l~l~~--~~~~~Ll~~L~e~~EW~Qi~IL 240 (746)
T PTZ00429 166 KLFHDDMQ--LFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDYGSEKIESSN--EWVNRLVYHLPECNEWGQLYIL 240 (746)
T ss_pred HHHhhCcc--cccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHhCchhhHHHH--HHHHHHHHHhhcCChHHHHHHH
Confidence 98764442 345678899999998876 899999999999999764332222221 2345556555555666666666
Q ss_pred HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.+|.... ++. -.++ ...+..+...|++. ++.+.-.|.+++
T Consensus 241 ~lL~~y~---P~~--~~e~--~~il~~l~~~Lq~~-N~AVVl~Aik~i 280 (746)
T PTZ00429 241 ELLAAQR---PSD--KESA--ETLLTRVLPRMSHQ-NPAVVMGAIKVV 280 (746)
T ss_pred HHHHhcC---CCC--cHHH--HHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence 6654322 211 0111 23455555656643 444454444443
No 95
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.79 E-value=0.0013 Score=63.72 Aligned_cols=248 Identities=12% Similarity=0.077 Sum_probs=158.9
Q ss_pred HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHH
Q 040073 131 NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLL 209 (407)
Q Consensus 131 ~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L 209 (407)
..+.|...|++..|++++..+.-...++.++..+|-.+... +|++.+..-| +..+..+-+ +..++.....+.+|
T Consensus 172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~---~~~Il~lAK~~e~~e~aR~~~~il 246 (832)
T KOG3678|consen 172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG---LGVILNLAKEREPVELARSVAGIL 246 (832)
T ss_pred hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc---chhhhhhhhhcCcHHHHHHHHHHH
Confidence 45677888999999999998776434688888888875543 2455555433 333333333 35788888999999
Q ss_pred HHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhcccchh
Q 040073 210 KSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTERR 287 (407)
Q Consensus 210 ~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~~ 287 (407)
.++-.+.+....-....|++...+--.+.. ++...+.++.+|.|++.+ ...++.|++..+-+-|.-+-.+. +.-
T Consensus 247 ~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt---~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk-Del 322 (832)
T KOG3678|consen 247 EHMFKHSEETCQRLVAAGGLDAVLYWCRRT---DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK-DEL 322 (832)
T ss_pred HHHhhhhHHHHHHHHhhcccchheeecccC---CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch-HHH
Confidence 999887765444444467788877777776 899999999999999884 45888899987777777666665 666
Q ss_pred HHHHHHHHHHHHhcCHhhHHHHHhccCc---hHHHHHHHHcC--------------------------CchhhHHHHHHH
Q 040073 288 VCELMLNVLDLLCRCAEGRAELLKHGAG---LAVVSKKILRV--------------------------SHAASDRAVRIL 338 (407)
Q Consensus 288 ~~~~al~~L~~L~~~~~~r~~i~~~~g~---i~~Lv~~l~~~--------------------------s~~~~e~a~~~L 338 (407)
.+-.|+-+...|+...+.-..+.. .|. +.+++..+.-+ |.+....++.+.
T Consensus 323 ~R~~AClAV~vlat~KE~E~~Vrk-S~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF 401 (832)
T KOG3678|consen 323 LRLHACLAVAVLATNKEVEREVRK-SGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAF 401 (832)
T ss_pred HHHHHHHHHhhhhhhhhhhHHHhh-ccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHH
Confidence 677888888888876654444433 222 22222211100 112223344444
Q ss_pred HHHhccC--CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 339 CSVCKFS--ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 339 ~~l~~~~--~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+...... ..+.-...--+-|+|+.|-++..+ .++..-+-|.+.|+.+.+.
T Consensus 402 ~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS-~d~vaakfAseALtviGEE 453 (832)
T KOG3678|consen 402 YLCAEAAIKSLQGKTKVFSEIGAIQALKEVASS-PDEVAAKFASEALTVIGEE 453 (832)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHhccc
Confidence 3322110 000001112235899999888874 4666677788899998875
No 96
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.77 E-value=0.00027 Score=53.68 Aligned_cols=87 Identities=22% Similarity=0.283 Sum_probs=69.2
Q ss_pred HHHHHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 187 LESLMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 187 i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
|+.|++.| +++++.+|..++.+|..+- . ..+++.|+.+++++ ++.++..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~-~~~~~~L~~~l~d~---~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------D-PEAIPALIELLKDE---DPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------H-HHHHHHHHHHHTSS---SHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------C-HhHHHHHHHHHcCC---CHHHHHHHHHHHHHhC-------
Confidence 57889988 7789999999999998431 1 25699999999888 9999999999999872
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
...+++.|.+++.+..+..++..|+.+|.
T Consensus 60 ---~~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ---DPEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 33479999999988645556788887764
No 97
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=0.00085 Score=61.75 Aligned_cols=187 Identities=21% Similarity=0.226 Sum_probs=128.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK 266 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~ 266 (407)
+..++.+|.+.++.++..|+..|..++.. ..+...-.+...++.|.+++... .+ .+.|+.+|.|++....-++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~---~~--~~~a~~alVnlsq~~~l~~~ 78 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL---DP--AEPAATALVNLSQKEELRKK 78 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc---cc--ccHHHHHHHHHHhhHHHHHH
Confidence 45788999999999999999999998765 33322223345788899999876 44 77899999999999988888
Q ss_pred HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-c----CchHHHHHHHHcCCc---hhhHHHHHHH
Q 040073 267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-G----AGLAVVSKKILRVSH---AASDRAVRIL 338 (407)
Q Consensus 267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~----g~i~~Lv~~l~~~s~---~~~e~a~~~L 338 (407)
++.. .+..++.++.+. ...+.+.++.+|.||+..++....+... . .|+.-++...-+.+. ..-.+-..++
T Consensus 79 ll~~-~~k~l~~~~~~p-~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf 156 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDP-QSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVF 156 (353)
T ss_pred HHHH-HHHHHHHHhcCc-ccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHH
Confidence 8887 777788887764 5678899999999999988776655432 2 356666665555432 2345566788
Q ss_pred HHHhccCCchHHHHHHHHhC--hHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 339 CSVCKFSATARVLQEMLQVG--VVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
.+++..... +....... -.++|+.+ .+.++..-|...+.+|++
T Consensus 157 ~nls~~~~g---R~l~~~~k~~p~~kll~f-t~~~s~vRr~GvagtlkN 201 (353)
T KOG2973|consen 157 ANLSQFEAG---RKLLLEPKRFPDQKLLPF-TSEDSQVRRGGVAGTLKN 201 (353)
T ss_pred HHHhhhhhh---hhHhcchhhhhHhhhhcc-cccchhhhccchHHHHHh
Confidence 888876543 23322222 23334333 334455556666667766
No 98
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.70 E-value=0.00049 Score=62.50 Aligned_cols=177 Identities=16% Similarity=0.087 Sum_probs=109.3
Q ss_pred hHHHHHHHHHHHHhhhC--hhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQS--ERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~--~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i 187 (407)
..|.+|+..|+.+...+ ......+.+ ...+..++..+.+... .+...|+.++..++..-...-+-.. + ..+
T Consensus 22 ~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs--~v~~~A~~~l~~l~~~l~~~~~~~~--~-~~l 96 (228)
T PF12348_consen 22 EERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRS--KVSKTACQLLSDLARQLGSHFEPYA--D-ILL 96 (228)
T ss_dssp HHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHH--H-HHH
T ss_pred HHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHH--HHHHHHHHHHHHHHHHHhHhHHHHH--H-HHH
Confidence 99999999999999886 333333332 1455666666665554 3578888888887754332222222 2 278
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhh-HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHH
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEF-FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRI 265 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~ 265 (407)
|.|+..+.+++..+++.|..+|..+....... ..+ ++.+...+.++ ++.++..++..|..+..... +..
T Consensus 97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K---n~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 97 PPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK---NPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S----HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHHccchHh
Confidence 99999999999999999999999998654311 123 45566777787 99999999999998766433 112
Q ss_pred HHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 266 KAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 266 ~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
.+-. ...++.+...+.+. ++++++.|-.++..+...-
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~ 208 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHF 208 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH
T ss_pred hhcccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHC
Confidence 2111 23677777888776 8999999999999886543
No 99
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=1.8e-05 Score=71.75 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=42.1
Q ss_pred cCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.|+||.+-+.-||.+.|+|.||.-||+--... +..+||+|++++.+
T Consensus 9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n-dk~~CavCR~pids 54 (324)
T KOG0824|consen 9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKN-DKKTCAVCRFPIDS 54 (324)
T ss_pred cceeeeccCCcCccccccchhhhhhhcchhhc-CCCCCceecCCCCc
Confidence 69999999999999999999999999996665 37889999999977
No 100
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=97.62 E-value=0.00089 Score=60.76 Aligned_cols=187 Identities=19% Similarity=0.190 Sum_probs=111.9
Q ss_pred hcCChhHHHHHHHHHHHhhccC---Cchhhhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073 195 KCGNYQSRSYAIMLLKSIFEVA---DPFQLISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG 270 (407)
Q Consensus 195 ~~~~~~~~~~a~~~L~~Ls~~~---~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~ 270 (407)
.+.+++.|..|..-|..+.... +....+... ..++..++..+.+. ...+...|+.++..|+..-.+...-.-.
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~---Rs~v~~~A~~~l~~l~~~l~~~~~~~~~ 93 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL---RSKVSKTACQLLSDLARQLGSHFEPYAD 93 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH------HHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHhHhHHHHHH
Confidence 4578999999999999998766 222222111 12334666677666 7789999999999998754433332333
Q ss_pred CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC--ch
Q 040073 271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA--TA 348 (407)
Q Consensus 271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~--~~ 348 (407)
..+|.|++.+.++ ..-+++.|..+|..++.+-..-..+. ++.+...+.+.++..+..++..|..+....+ ..
T Consensus 94 ~~l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~ 167 (228)
T PF12348_consen 94 ILLPPLLKKLGDS-KKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS 167 (228)
T ss_dssp HHHHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred HHHHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence 5789999999886 67888999999999988554112221 2233443444578899999999998887555 11
Q ss_pred HHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 349 RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 349 ~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
.......-...++.+...+. +.++.+|+.|..++..+.+++.
T Consensus 168 ~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 168 VLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp GG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHHHH-
T ss_pred hhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHHHCC
Confidence 11111111235566666666 7899999999999999988764
No 101
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=3e-05 Score=70.23 Aligned_cols=46 Identities=22% Similarity=0.271 Sum_probs=40.8
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|.|-||.+.|.+||+..|||+||..|-.+.+.. ...|++|++.+..
T Consensus 242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk--~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK--GEKCYVCSQQTHG 287 (313)
T ss_pred ccccccccccccchhhcCCceeehhhhcccccc--CCcceeccccccc
Confidence 789999999999999999999999998887754 6789999987643
No 102
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.62 E-value=0.0022 Score=62.11 Aligned_cols=237 Identities=11% Similarity=0.065 Sum_probs=149.7
Q ss_pred hhhHHHHHHHhcCCC-h--HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 97 KTQIVKILNDAKKSP-S--TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~--~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
.+++..|++.+.+++ + ++.+|.+.|..+.. .+|++.++..| +..+..+-+.... .+.....+.+|.+|-.+.+
T Consensus 179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~-~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREP-VELARSVAGILEHMFKHSE 254 (832)
T ss_pred cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCc-HHHHHHHHHHHHHHhhhhH
Confidence 345667788888887 4 47888888888754 57899999876 4444444332222 2346777889999888776
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
+...-+.+.| .+..++-..+..++.+..+++.+|.|++-+.- ..+.+... .+-+-|.-+-.+. +.-.+-.|+
T Consensus 255 et~~~Lvaa~--~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~sk---Del~R~~AC 328 (832)
T KOG3678|consen 255 ETCQRLVAAG--GLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSK---DELLRLHAC 328 (832)
T ss_pred HHHHHHHhhc--ccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcch---HHHHHHHHH
Confidence 6554455566 48888877788889999999999999986543 33444443 3444455555555 667777888
Q ss_pred HHHHHhCCCCchHHHHHhcC---chHHHHHHhhccc-------------------------chhHHHHHHHHHHHHhc--
Q 040073 252 KLLVELCPWGRNRIKAVEGG---GVSVLVDLLLDVT-------------------------ERRVCELMLNVLDLLCR-- 301 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~~G---~v~~Lv~lL~~~~-------------------------~~~~~~~al~~L~~L~~-- 301 (407)
-+..-|+.+.+--....+.| .|+++++.+..+. +...-..++++....+.
T Consensus 329 lAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAa 408 (832)
T KOG3678|consen 329 LAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAA 408 (832)
T ss_pred HHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHH
Confidence 88888887666444444444 4556666554320 01122234444433322
Q ss_pred --CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 302 --CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 302 --~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
...|+.++..+-|+|..|-.+..+.+......|-.+|..+..
T Consensus 409 IKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGE 452 (832)
T KOG3678|consen 409 IKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGE 452 (832)
T ss_pred HHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhcc
Confidence 446777777767888887775554444455555566655543
No 103
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.61 E-value=0.012 Score=56.64 Aligned_cols=255 Identities=11% Similarity=0.049 Sum_probs=166.5
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc----chhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN----GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV 215 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~----gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 215 (407)
.+-+++++++..+... ....++..+..+-..+.....++... ....-+..+.+|..++.-+.+.+.+++..++..
T Consensus 66 ~v~~fi~LlS~~~kdd-~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~ 144 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDD-TVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACF 144 (442)
T ss_pred HHHHHHHHhchhhhHH-HHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 4667778887655422 24555555554433332223333221 001356788999999988888899999998765
Q ss_pred CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhh-cccchhHHHHHHH
Q 040073 216 ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLL-DVTERRVCELMLN 294 (407)
Q Consensus 216 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~-~~~~~~~~~~al~ 294 (407)
...+..-....=....|-..+++. .+++...-++++|-.+...++.|..++.+.++..|+..+. +..+-.++-..+-
T Consensus 145 g~~~~~~~e~~~~~~~l~~~l~~~--~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsif 222 (442)
T KOG2759|consen 145 GNCKMELSELDVYKGFLKEQLQSS--TNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIF 222 (442)
T ss_pred ccccccchHHHHHHHHHHHHHhcc--CCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHH
Confidence 543322211111234455566664 3778888899999999999999999999999999999994 3335677788899
Q ss_pred HHHHHhcCHhhHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHH----HHHHhChHHHHHHHHhc
Q 040073 295 VLDLLCRCAEGRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQ----EMLQVGVVSKLCLVLQV 369 (407)
Q Consensus 295 ~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~----~~~~~g~i~~Ll~ll~~ 369 (407)
.++.|+-++...+.+ ...+.|+.|.+.+... .+++...+++++.|++...++.+... .|+..+ +++-+..|+.
T Consensus 223 ciWlLtFn~~~ae~~-~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~ 300 (442)
T KOG2759|consen 223 CIWLLTFNPHAAEKL-KRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEE 300 (442)
T ss_pred HHHHhhcCHHHHHHH-hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHh
Confidence 999999888766555 4467889999976554 37888899999999998765544444 455545 5555566654
Q ss_pred C--CCHHHHHHHHHHHHHHHhhccCCCCCCcc
Q 040073 370 D--ASVKTKERAREILKLNARAWRDSPCVPAH 399 (407)
Q Consensus 370 ~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~~ 399 (407)
. .++....--..+-..|......-++.|.|
T Consensus 301 rkysDEDL~~di~~L~e~L~~svq~LsSFDeY 332 (442)
T KOG2759|consen 301 RKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEY 332 (442)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 4 35555555444555555444333444333
No 104
>PTZ00429 beta-adaptin; Provisional
Probab=97.55 E-value=0.042 Score=58.28 Aligned_cols=257 Identities=16% Similarity=0.145 Sum_probs=154.6
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
..+...++.+.+.+ +.+.-.---|.+.++.+++.-. + ++..+.+=+.+.++ .++..|+..+..+-. .
T Consensus 68 ~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pelal-L----aINtl~KDl~d~Np--~IRaLALRtLs~Ir~-----~ 135 (746)
T PTZ00429 68 YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKAL-L----AVNTFLQDTTNSSP--VVRALAVRTMMCIRV-----S 135 (746)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHHH-H----HHHHHHHHcCCCCH--HHHHHHHHHHHcCCc-----H
Confidence 34556666666665 4444444444455554443211 1 23444444444433 457777777766542 2
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
.++ +. .++.+.+.|.+.++-+|..|+.++..+-..+.. .....|+++.|.++|.+. ++.++.+|+.+|..
T Consensus 136 ~i~-e~---l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~---dp~Vv~nAl~aL~e 205 (746)
T PTZ00429 136 SVL-EY---TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN---NPVVASNAAAIVCE 205 (746)
T ss_pred HHH-HH---HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC---CccHHHHHHHHHHH
Confidence 222 22 577888889899999999999999999665443 334457899999999988 99999999999999
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
+....+.... ...+.+..|+..|.+. ++-.+-..+.+| +.. +....... ..+..+...+.+.++.+.-.|+
T Consensus 206 I~~~~~~~l~-l~~~~~~~Ll~~L~e~-~EW~Qi~IL~lL---~~y~P~~~~e~~---~il~~l~~~Lq~~N~AVVl~Ai 277 (746)
T PTZ00429 206 VNDYGSEKIE-SSNEWVNRLVYHLPEC-NEWGQLYILELL---AAQRPSDKESAE---TLLTRVLPRMSHQNPAVVMGAI 277 (746)
T ss_pred HHHhCchhhH-HHHHHHHHHHHHhhcC-ChHHHHHHHHHH---HhcCCCCcHHHH---HHHHHHHHHhcCCCHHHHHHHH
Confidence 9875443322 2345567777777654 333333444444 332 22222211 2345555656666777788888
Q ss_pred HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 336 RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 336 ~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+++..+.... +.+....+.. ....+|+.++. +++.+|.-+-.-+..+..
T Consensus 278 k~il~l~~~~-~~~~~~~~~~-rl~~pLv~L~s--s~~eiqyvaLr~I~~i~~ 326 (746)
T PTZ00429 278 KVVANLASRC-SQELIERCTV-RVNTALLTLSR--RDAETQYIVCKNIHALLV 326 (746)
T ss_pred HHHHHhcCcC-CHHHHHHHHH-HHHHHHHHhhC--CCccHHHHHHHHHHHHHH
Confidence 8888887543 2223333221 12255666543 367888888776666655
No 105
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.55 E-value=0.0083 Score=60.68 Aligned_cols=274 Identities=13% Similarity=0.084 Sum_probs=180.2
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHH-h---cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLE-A---AGAIEFLATIITKSDAGSDECDEALSILYHLNVS 171 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~-~---~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 171 (407)
+..++.|...|.+++ ..+..|..+|.+++.++++.-+.-+ . .-.+|.++++.++.++ ..+.+|+..+-..-..
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp--kiRs~A~~cvNq~i~~ 204 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP--KIRSHAVGCVNQFIII 204 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh--hHHHHHHhhhhheeec
Confidence 556788888888887 7788899999999988765322211 1 2468899999998866 3488888876554443
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
.. ..+...-+ ++++.+..+-...++++|.+.+.++..|......+-.-- -.++|...+..-++. +.++.-.|+
T Consensus 205 ~~--qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~ph-l~~IveyML~~tqd~---dE~VALEAC 277 (885)
T KOG2023|consen 205 QT--QALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPH-LDNIVEYMLQRTQDV---DENVALEAC 277 (885)
T ss_pred Cc--HHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccc-hHHHHHHHHHHccCc---chhHHHHHH
Confidence 32 33333333 378888888877899999999999999987665543322 247788888888877 888999999
Q ss_pred HHHHHhCCCCchHHHHHhc--CchHHHHHH----------hhcccc----------------------------------
Q 040073 252 KLLVELCPWGRNRIKAVEG--GGVSVLVDL----------LLDVTE---------------------------------- 285 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~~--G~v~~Lv~l----------L~~~~~---------------------------------- 285 (407)
.....++..+--+..+... ..||.|++- |.+..+
T Consensus 278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDddd 357 (885)
T KOG2023|consen 278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDD 357 (885)
T ss_pred HHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccc
Confidence 9999999877544444442 466666652 220000
Q ss_pred -----------hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH
Q 040073 286 -----------RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM 354 (407)
Q Consensus 286 -----------~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~ 354 (407)
=+++.-.+++|..|+.- -+.++... .+|.|=+.|.+..=..+|.++-+|..++.+. ..-+
T Consensus 358 De~DDdD~~~dWNLRkCSAAaLDVLanv--f~~elL~~--l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc-----M~g~ 428 (885)
T KOG2023|consen 358 DEDDDDDAFSDWNLRKCSAAALDVLANV--FGDELLPI--LLPLLKEHLSSEEWKVREAGVLALGAIAEGC-----MQGF 428 (885)
T ss_pred cccccccccccccHhhccHHHHHHHHHh--hHHHHHHH--HHHHHHHHcCcchhhhhhhhHHHHHHHHHHH-----hhhc
Confidence 12444555666666541 23344442 3444444343323456888888888888543 3333
Q ss_pred HHh--ChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 355 LQV--GVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 355 ~~~--g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+.. -.+|.|+.+|. +..+-+|....|.|..++..
T Consensus 429 ~p~LpeLip~l~~~L~-DKkplVRsITCWTLsRys~w 464 (885)
T KOG2023|consen 429 VPHLPELIPFLLSLLD-DKKPLVRSITCWTLSRYSKW 464 (885)
T ss_pred ccchHHHHHHHHHHhc-cCccceeeeeeeeHhhhhhh
Confidence 332 36777788886 56788888888888776653
No 106
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.002 Score=63.47 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=130.5
Q ss_pred HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHH
Q 040073 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVL 194 (407)
Q Consensus 115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL 194 (407)
..++..|..+++.-...|.-+.++.+.+.|+++|++++- -+.--+...++|+...=.+.+..+...+ .|..|+.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pei--mi~~~~t~~icn~vv~fsnL~~~fL~~~--iIdvl~~~v 482 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEI--MIEFPDTIDICNKVVPFSNLGAGFLEKS--IIDVLVNLV 482 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccc--eeeccchhhhhheeeeccchHHHHHHhh--HHHHHHHHh
Confidence 345667777877656678899999999999999998654 2244456677776554444555555555 899999999
Q ss_pred hcCChhHHHHHHHHHHHhhccCCchhh--hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-ch---HHHHH
Q 040073 195 KCGNYQSRSYAIMLLKSIFEVADPFQL--ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RN---RIKAV 268 (407)
Q Consensus 195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~--i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n---~~~~v 268 (407)
.+.+...+.+..|.|+++...+++... ....-| +..++++.+++ .-.+++..+..|+|+..+. .| +..+.
T Consensus 483 ~sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig-~~kvl~~~NDp---c~~vq~q~lQilrNftc~~~knEkskdv~~ 558 (743)
T COG5369 483 MSKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIG-VEKVLSYTNDP---CFKVQHQVLQILRNFTCDTSKNEKSKDVFI 558 (743)
T ss_pred hcchhhhhhcchhhhhhhhhcCcchhhhhhHHhcC-HHHHHHHhcCc---ccccHHHHHHHHHhcccccccccccceeEE
Confidence 988889999999999999877766532 333344 78899999887 8899999999999987632 22 22222
Q ss_pred hcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073 269 EGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK 311 (407)
Q Consensus 269 ~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~ 311 (407)
... ....|++.+... ++-..+..+-+|.+++.++++...++.
T Consensus 559 K~~p~~ylfk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~ 604 (743)
T COG5369 559 KATPRRYLFKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQ 604 (743)
T ss_pred ecChHHHHHHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHH
Confidence 221 233455555554 343345557777777776666655543
No 107
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.038 Score=51.16 Aligned_cols=235 Identities=12% Similarity=0.190 Sum_probs=149.3
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
...++.+.+.+...+. -..|+..|-+++.+ +..|+.+.+. .+..+...+.++.. ..-+....+|.||+..+....
T Consensus 43 ~~~lk~l~qL~~~~~~-~~~a~~alVnlsq~-~~l~~~ll~~-~~k~l~~~~~~p~~--~lad~~cmlL~NLs~~~~~~~ 117 (353)
T KOG2973|consen 43 EALLKDLTQLLKDLDP-AEPAATALVNLSQK-EELRKKLLQD-LLKVLMDMLTDPQS--PLADLICMLLSNLSRDDDEVA 117 (353)
T ss_pred hhhHHHHHHHccCccc-ccHHHHHHHHHHhh-HHHHHHHHHH-HHHHHHHHhcCccc--chHHHHHHHHHHhccCchHHH
Confidence 3345555555554433 56788889999876 6777777776 78888888877654 236778889999998876544
Q ss_pred hHhhc-c----chhhHHHHHHHHhcC-C-hhHHHHHHHHHHHhhccCCchhhhhchhhh-HHHHHHHcccCCCCCHHHHH
Q 040073 177 SIVIN-N----GEEFLESLMRVLKCG-N-YQSRSYAIMLLKSIFEVADPFQLISVKQEF-FTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 177 ~~i~~-~----gg~~i~~Lv~lL~~~-~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~ 248 (407)
.++.. . .| .+.........+ + ..--.+.+.++.+|+.....+..+....-+ +..|.. +.+. +..+++
T Consensus 118 ~ll~~~~~~~~~~-lm~l~~~~~d~~~n~~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~-ft~~---~s~vRr 192 (353)
T KOG2973|consen 118 ALLTNLTEKKDSG-LMRLARAFCDKSYNAYAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLP-FTSE---DSQVRR 192 (353)
T ss_pred HHHHhcccccccc-hHHHHHHHhCcccccccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhc-cccc---chhhhc
Confidence 44332 1 32 444444555443 3 233467888889999887777666554311 111222 2223 444554
Q ss_pred HH-HHHHHHhCCCCchHHHHHhc--CchHHHHHHhhc-------------------------ccchhHHHHHHHHHHHHh
Q 040073 249 AA-LKLLVELCPWGRNRIKAVEG--GGVSVLVDLLLD-------------------------VTERRVCELMLNVLDLLC 300 (407)
Q Consensus 249 ~A-~~aL~~L~~~~~n~~~~v~~--G~v~~Lv~lL~~-------------------------~~~~~~~~~al~~L~~L~ 300 (407)
.+ +++|.|.|-...+...++.. ..+|.|+.-|.+ .+++.++..-+.+|..||
T Consensus 193 ~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLc 272 (353)
T KOG2973|consen 193 GGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLC 272 (353)
T ss_pred cchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHH
Confidence 44 78999999888888887764 355555443322 126678889999999999
Q ss_pred cCHhhHHHHHhccCchHHHHHHHHcC--CchhhHHHHHHHHHHhc
Q 040073 301 RCAEGRAELLKHGAGLAVVSKKILRV--SHAASDRAVRILCSVCK 343 (407)
Q Consensus 301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~l~~ 343 (407)
....||..+.+. |+..+++-+..+ ++...+.+-.+.-.+..
T Consensus 273 aT~~GRe~lR~k--gvYpilRElhk~e~ded~~~ace~vvq~Lv~ 315 (353)
T KOG2973|consen 273 ATRAGREVLRSK--GVYPILRELHKWEEDEDIREACEQVVQMLVR 315 (353)
T ss_pred hhhHhHHHHHhc--CchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence 999999988873 567777767655 34555555444444444
No 108
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.51 E-value=0.011 Score=59.31 Aligned_cols=266 Identities=15% Similarity=0.107 Sum_probs=169.9
Q ss_pred HHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh--------ccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH
Q 040073 117 CLRRLRSITLQSERNRSCLEAAGAIEFLATIIT--------KSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE 188 (407)
Q Consensus 117 al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~--------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~ 188 (407)
||.+|+.+.++ +.+.+.+....++..|++.-. .......+..+|+..|+|+-..++..+....+.| ..+
T Consensus 1 ~L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~--~~~ 77 (446)
T PF10165_consen 1 CLETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLG--LAE 77 (446)
T ss_pred CHHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcC--cHH
Confidence 46778888776 667777777666777776651 1112234689999999998888887888888877 588
Q ss_pred HHHHHHhcC-----ChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHccc-------CC-------CCCHHHHH
Q 040073 189 SLMRVLKCG-----NYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRD-------HH-------QFSQQASK 248 (407)
Q Consensus 189 ~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~-------~~-------~~~~~~~~ 248 (407)
.++..|+.. +.+..-...++|+-++... +....+....+++..|+..|.. .. ..+.++..
T Consensus 78 ~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 78 KLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999999876 7888888999998887543 4455566655667777766531 00 01446777
Q ss_pred HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---c-----chhHHHHHHHHHHHHhcCH-hh-------HHHH---
Q 040073 249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---T-----ERRVCELMLNVLDLLCRCA-EG-------RAEL--- 309 (407)
Q Consensus 249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---~-----~~~~~~~al~~L~~L~~~~-~~-------r~~i--- 309 (407)
.++++|+|+.........-.+.+.++.|+.+|..- . .......++.+|.++-... +. ...+
T Consensus 158 EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~ 237 (446)
T PF10165_consen 158 EILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPE 237 (446)
T ss_pred HHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCC
Confidence 88999999987544333223345677777766532 1 2355667777777773211 10 0000
Q ss_pred HhccCchHHHHHHHHcC----C--c--hhhHHHHHHHHHHhccCCchHHHHHHHH----------------hChHHHHHH
Q 040073 310 LKHGAGLAVVSKKILRV----S--H--AASDRAVRILCSVCKFSATARVLQEMLQ----------------VGVVSKLCL 365 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~~----s--~--~~~e~a~~~L~~l~~~~~~~~~~~~~~~----------------~g~i~~Ll~ 365 (407)
......+..|+.+|.+. . . ..-..-+.+|..++..+ +.++..+.. ...-.+|+.
T Consensus 238 ~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlr 315 (446)
T PF10165_consen 238 GDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLR 315 (446)
T ss_pred CCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHH
Confidence 01123455666655432 1 1 23445566777777654 234444433 245678999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHh
Q 040073 366 VLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 366 ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+|.+.. +..|..++++|-.|++
T Consensus 316 Lmt~~~-~~~k~~vaellf~Lc~ 337 (446)
T PF10165_consen 316 LMTSPD-PQLKDAVAELLFVLCK 337 (446)
T ss_pred HhCCCC-chHHHHHHHHHHHHHh
Confidence 998654 9999999999988876
No 109
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=97.51 E-value=7.4e-05 Score=72.56 Aligned_cols=51 Identities=22% Similarity=0.314 Sum_probs=43.9
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCcccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQET 58 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~~ 58 (407)
.+..|-+|.+.-.||+...|.|+|||-||.+|.... .+.+||.|...++.+
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 347899999999999999999999999999987642 357899999888763
No 110
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.49 E-value=0.016 Score=57.18 Aligned_cols=198 Identities=16% Similarity=0.026 Sum_probs=107.9
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ 220 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 220 (407)
+..|+..|.+.+. .++..++.+|..+ .... +.+.|+.+|++.++.++..+..++...
T Consensus 88 ~~~L~~~L~d~~~--~vr~aaa~ALg~i-----------~~~~--a~~~L~~~L~~~~p~vR~aal~al~~r-------- 144 (410)
T TIGR02270 88 LRSVLAVLQAGPE--GLCAGIQAALGWL-----------GGRQ--AEPWLEPLLAASEPPGRAIGLAALGAH-------- 144 (410)
T ss_pred HHHHHHHhcCCCH--HHHHHHHHHHhcC-----------CchH--HHHHHHHHhcCCChHHHHHHHHHHHhh--------
Confidence 6777777776554 3466666666531 1111 566777777777777776666555441
Q ss_pred hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 221 LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 221 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
. ....+.|+.+|++. ++.++..|+++|..|.. ..+++.|...+.+. ++.++..|+..|..+-
T Consensus 145 --~--~~~~~~L~~~L~d~---d~~Vra~A~raLG~l~~----------~~a~~~L~~al~d~-~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 145 --R--HDPGPALEAALTHE---DALVRAAALRALGELPR----------RLSESTLRLYLRDS-DPEVRFAALEAGLLAG 206 (410)
T ss_pred --c--cChHHHHHHHhcCC---CHHHHHHHHHHHHhhcc----------ccchHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 1 12346677777776 78888888888876542 23455566666664 6777777777776663
Q ss_pred cCHhhHHHHHh--ccCchHHHH--HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH-------HHhChHHHHHHHHhc
Q 040073 301 RCAEGRAELLK--HGAGLAVVS--KKILRVSHAASDRAVRILCSVCKFSATARVLQEM-------LQVGVVSKLCLVLQV 369 (407)
Q Consensus 301 ~~~~~r~~i~~--~~g~i~~Lv--~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~-------~~~g~i~~Ll~ll~~ 369 (407)
. ++....+.. ...|.+.-. ..++... ....++..|..+..... ++..+ ....+++.|+..+.
T Consensus 207 ~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~~a~~~L~~ll~d~~---vr~~a~~AlG~lg~p~av~~L~~~l~- 279 (410)
T TIGR02270 207 S-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA--GGPDAQAWLRELLQAAA---TRREALRAVGLVGDVEAAPWCLEAMR- 279 (410)
T ss_pred C-HhHHHHHHHHHhccCccHHHHHHHHHHhC--CchhHHHHHHHHhcChh---hHHHHHHHHHHcCCcchHHHHHHHhc-
Confidence 3 222211111 011111110 1111100 11133344444443211 12111 12357888888776
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040073 370 DASVKTKERAREILKLNAR 388 (407)
Q Consensus 370 ~~~~~~k~~A~~lL~~l~~ 388 (407)
.+..++.|.+.++.+.-
T Consensus 280 --d~~~aR~A~eA~~~ItG 296 (410)
T TIGR02270 280 --EPPWARLAGEAFSLITG 296 (410)
T ss_pred --CcHHHHHHHHHHHHhhC
Confidence 34489999999988754
No 111
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.47 E-value=0.017 Score=55.53 Aligned_cols=226 Identities=12% Similarity=0.149 Sum_probs=152.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
+...-++++|..+... +++|..++.+.++..|+..|.+...+-.++.+.+-.+..|+.+..- .+.+...+ .|+.|.
T Consensus 172 ~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~--li~~L~ 247 (442)
T KOG2759|consen 172 DYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFD--LIQDLS 247 (442)
T ss_pred chHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhcc--HHHHHH
Confidence 6667788899999987 8999999999999999999964444445688888899999987754 45554433 899999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHhhccCCch---h---hhhchhhhHHHHHHHcccCCCCCHHHHHHHHH--------HHHH
Q 040073 192 RVLKCG-NYQSRSYAIMLLKSIFEVADPF---Q---LISVKQEFFTEIVNVLRDHHQFSQQASKAALK--------LLVE 256 (407)
Q Consensus 192 ~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~---~---~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~--------aL~~ 256 (407)
.++++. ...+-.-.+.+++|+....+.+ + .-+...+ ++.-++.|...+ ++++=....+. -...
T Consensus 248 ~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rk-ysDEDL~~di~~L~e~L~~svq~ 325 (442)
T KOG2759|consen 248 DIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCK-VLKTLQSLEERK-YSDEDLVDDIEFLTEKLKNSVQD 325 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcC-chHHHHHHHhcC-CCcHHHHHHHHHHHHHHHHHHHh
Confidence 999874 4445566777888887665322 1 2233333 556666665431 23222222221 1122
Q ss_pred hCCCC------------------------chHHHHHhc--CchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHH
Q 040073 257 LCPWG------------------------RNRIKAVEG--GGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAEL 309 (407)
Q Consensus 257 L~~~~------------------------~n~~~~v~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i 309 (407)
|++.+ +|...+-+. ..+..|+.+|....++.+...|+.=+..... .|+||..+
T Consensus 326 LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv 405 (442)
T KOG2759|consen 326 LSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVV 405 (442)
T ss_pred hccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHH
Confidence 22221 255555553 3788899999886556665666666665555 68888766
Q ss_pred HhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 310 LKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
.. .||=..++++|.+.+++++-+|+.++..+..+
T Consensus 406 ~k-~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 406 EK-YGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred HH-hchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 55 78889999988777899999999998877653
No 112
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.4e-05 Score=66.99 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=41.1
Q ss_pred CcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
.+..||+|++.-..|.+.- |||.||.-||..-+..+..++||.|+...
T Consensus 238 ~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~ 286 (298)
T KOG2879|consen 238 SDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENV 286 (298)
T ss_pred CCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCC
Confidence 4569999999999999885 99999999999977654478999999765
No 113
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.02 Score=53.43 Aligned_cols=280 Identities=14% Similarity=0.130 Sum_probs=170.2
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHH--HHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFL--ATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~L--v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
+-++.++.-+-+.+ ++...|.+.|..++.. +..-..+++......+ .++-...++ .++...+..+..+..-...
T Consensus 128 eilklildcIggeddeVAkAAiesikrialf-paaleaiFeSellDdlhlrnlaakcnd--iaRvRVleLIieifSiSpe 204 (524)
T KOG4413|consen 128 EILKLILDCIGGEDDEVAKAAIESIKRIALF-PAALEAIFESELLDDLHLRNLAAKCND--IARVRVLELIIEIFSISPE 204 (524)
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHHHHhcccccCChHHHhHHHhhhhh--HHHHHHHHHHHHHHhcCHH
Confidence 33445566666666 7778888999999887 6667777776655443 222223333 4577777777766554444
Q ss_pred HHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH--
Q 040073 175 LKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL-- 251 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~-- 251 (407)
........| .+..|..-|+. .+.-++.+.......|+.....++.+.. .|.|..+-+++...+ .+|--+-.++
T Consensus 205 saneckkSG--LldlLeaElkGteDtLVianciElvteLaeteHgreflaQ-eglIdlicnIIsGad-sdPfekfralmg 280 (524)
T KOG4413|consen 205 SANECKKSG--LLDLLEAELKGTEDTLVIANCIELVTELAETEHGREFLAQ-EGLIDLICNIISGAD-SDPFEKFRALMG 280 (524)
T ss_pred HHhHhhhhh--HHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhhcch-hhHHHHHHHHhhCCC-CCcHHHHHHHHH
Confidence 555566565 78888777765 5777888999999999887777666555 688888888886431 1332222232
Q ss_pred --HHHHHhCCCCchHHHHHhc--CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH---HHHHHH
Q 040073 252 --KLLVELCPWGRNRIKAVEG--GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV---VSKKIL 324 (407)
Q Consensus 252 --~aL~~L~~~~~n~~~~v~~--G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~---Lv~~l~ 324 (407)
+.+.++...+-.-.++++. -+|....+++... |+...+.|..+|..|-.+.+|+.-+... |-|. ++....
T Consensus 281 fgkffgkeaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGilGSnteGadlllkT--gppaaehllaraf 357 (524)
T KOG4413|consen 281 FGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGILGSNTEGADLLLKT--GPPAAEHLLARAF 357 (524)
T ss_pred HHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHhccCCcchhHHHhcc--CChHHHHHHHHHh
Confidence 2333333322222233332 1334444555554 7889999999999999999999877663 3333 333333
Q ss_pred cCC-chhhHHHHHHHHHHhccCC---c--------hHHHHHHHH----h---ChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 325 RVS-HAASDRAVRILCSVCKFSA---T--------ARVLQEMLQ----V---GVVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 325 ~~s-~~~~e~a~~~L~~l~~~~~---~--------~~~~~~~~~----~---g~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
+.+ ..-++.++.+|.++++.-. + ..++..+.+ . .-+...+.+++ .+.++.+-.|-+.+..
T Consensus 358 dqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilq-QpfpEihcAalktfTA 436 (524)
T KOG4413|consen 358 DQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQ-QPFPEIHCAALKTFTA 436 (524)
T ss_pred cccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHc-CCChhhHHHHHHHHHH
Confidence 333 3457888889998887532 1 111111111 1 22233445555 4578888888777766
Q ss_pred HHh
Q 040073 386 NAR 388 (407)
Q Consensus 386 l~~ 388 (407)
+..
T Consensus 437 iaa 439 (524)
T KOG4413|consen 437 IAA 439 (524)
T ss_pred HHc
Confidence 543
No 114
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=97.39 E-value=0.00019 Score=53.30 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=36.3
Q ss_pred CcccCccccccCcC-ceec-CCcccccHHHHHHHHhcC-CCCCCccccccc
Q 040073 8 AHFLCPISLQLMRD-PVTV-STGITYDRVNIERWLFTC-KNNTCPVTKQVL 55 (407)
Q Consensus 8 ~~~~Cpi~~~~~~d-Pv~~-~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~ 55 (407)
-+-.||.|...=.| |++. .|||.|-.+||.+|+... ....||.|+++.
T Consensus 31 fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w 81 (85)
T PF12861_consen 31 FDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPW 81 (85)
T ss_pred cccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCee
Confidence 34456666655555 6655 699999999999999863 257899999875
No 115
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.33 E-value=7.8e-05 Score=76.49 Aligned_cols=49 Identities=24% Similarity=0.554 Sum_probs=42.6
Q ss_pred CCcccCccccccCcC-----ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRD-----PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~d-----Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..+-.|+||.|.|.. |=.++|||.|...|+.+|+++ ..+||.|+..+.+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er--~qtCP~CR~~~~~ 342 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER--QQTCPTCRTVLYD 342 (543)
T ss_pred hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH--hCcCCcchhhhhc
Confidence 335699999999999 778999999999999999987 7899999985433
No 116
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=97.28 E-value=9.3e-05 Score=70.19 Aligned_cols=36 Identities=14% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT 42 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~ 42 (407)
.++++||||+..|+||++++|||+.||.|-..-+.+
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhccc
Confidence 578999999999999999999999999998876544
No 117
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=97.28 E-value=0.15 Score=51.16 Aligned_cols=231 Identities=19% Similarity=0.126 Sum_probs=144.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCChhHH-HhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSESYL-KSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~-~~~i~~~gg~~i 187 (407)
+...+|+++|.|+.-.++..|..+++.|..+.++..|+...+ +.++..-...+|+.++...... ++++.+.+ .+
T Consensus 47 ~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~--~~ 124 (446)
T PF10165_consen 47 DVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH--GV 124 (446)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhh--hH
Confidence 778899999999999999999999999999999999987732 2345777888888777654444 45555544 47
Q ss_pred HHHHHHHhc-------C----------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc------CCCCCH
Q 040073 188 ESLMRVLKC-------G----------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD------HHQFSQ 244 (407)
Q Consensus 188 ~~Lv~lL~~-------~----------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~ 244 (407)
..++..|.. . +.+....+.++++|+..+...... -...+.++.|+.++.. ......
T Consensus 125 ~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~ 203 (446)
T PF10165_consen 125 ELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLD 203 (446)
T ss_pred HHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcch
Confidence 767666542 0 223345677778888765544332 1123446666655431 111234
Q ss_pred HHHHHHHHHHHHhCCCCc-h-------HHH----HHhcCchHHHHHHhhccc----c---hhHHHHHHHHHHHHhcCH-h
Q 040073 245 QASKAALKLLVELCPWGR-N-------RIK----AVEGGGVSVLVDLLLDVT----E---RRVCELMLNVLDLLCRCA-E 304 (407)
Q Consensus 245 ~~~~~A~~aL~~L~~~~~-n-------~~~----~v~~G~v~~Lv~lL~~~~----~---~~~~~~al~~L~~L~~~~-~ 304 (407)
.....+..+|.|+-.... . ... -.....+..|+++|...- . .+...-.+.+|..++... .
T Consensus 204 ~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~ 283 (446)
T PF10165_consen 204 PPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAARE 283 (446)
T ss_pred hhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHH
Confidence 667778888888732100 0 100 122346777787776531 1 134456677777777753 3
Q ss_pred hHHHHHhc--------------cCc-hHHHHHHHHcCCchhhHHHHHHHHHHhccC
Q 040073 305 GRAELLKH--------------GAG-LAVVSKKILRVSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 305 ~r~~i~~~--------------~g~-i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~ 345 (407)
.|..+... +.. -..|+++|....+..+..+...|+.||..+
T Consensus 284 ~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d 339 (446)
T PF10165_consen 284 VRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKED 339 (446)
T ss_pred HHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhh
Confidence 34444331 222 246777666556888999999999999743
No 118
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.26 E-value=0.02 Score=60.73 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=132.9
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHH--hcCCChhHHH
Q 040073 99 QIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILY--HLNVSESYLK 176 (407)
Q Consensus 99 ~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~--~L~~~~~~~~ 176 (407)
++|-.++-|-+. --|..||..|.....-.+=....-..-|+.|-++++|.+... + +.-.+-.|. .|+.+..-+.
T Consensus 473 QLPiVLQVLLSQ-vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~--E-LrpiLVFIWAKILAvD~SCQ~ 548 (1387)
T KOG1517|consen 473 QLPIVLQVLLSQ-VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSAR--E-LRPILVFIWAKILAVDPSCQA 548 (1387)
T ss_pred hcchHHHHHHHH-HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchH--h-hhhhHHHHHHHHHhcCchhHH
Confidence 334344444332 335566666666554445555666678999999999998755 2 333333333 3666665556
Q ss_pred hHhhccchhhHHHHHHHHhc-C--ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKC-G--NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~-~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
+++.++| -.-++..|.. + +++-|..|+-+|..+...-..-+......+.|..-...|+++ ..+=.+...+-+
T Consensus 549 dLvKe~g---~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~--~~pLLrQW~~ic 623 (1387)
T KOG1517|consen 549 DLVKENG---YKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDD--PEPLLRQWLCIC 623 (1387)
T ss_pred HHHhccC---ceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCC--ccHHHHHHHHHH
Confidence 7777654 4455566655 2 457788888889988766544455555567777777888775 146677888888
Q ss_pred HHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073 254 LVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 254 L~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
|..|-.+ +.+|-.=++.++.+.|+.+|.+. -++++..|+-+|..+-.+
T Consensus 624 LG~LW~d~~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 624 LGRLWEDYDEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHhhhcchhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhcc
Confidence 8888874 55777778889999999999986 789999999999988764
No 119
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.19 Score=53.77 Aligned_cols=248 Identities=16% Similarity=0.119 Sum_probs=150.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
..+.-|++.+..+.. +.+....+++.|.+..|+.+|-+..+ .++.++.+|+.|+.+.+-.++.+.. | ++.-+.
T Consensus 1787 ~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL~lLHS~PS---~R~~vL~vLYAL~S~~~i~keA~~h-g--~l~yil 1859 (2235)
T KOG1789|consen 1787 KLQILALQVILLATA-NKECVTDLATCNVLTTLLTLLHSQPS---MRARVLDVLYALSSNGQIGKEALEH-G--GLMYIL 1859 (2235)
T ss_pred hHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHHHHHhcChH---HHHHHHHHHHHHhcCcHHHHHHHhc-C--chhhhh
Confidence 566677777766654 36677888889999999999986554 3889999999999877655555543 4 354555
Q ss_pred HHHhc-CChhHHHHHHHHHHHhhccCC--chhhhhc----hhhh-------HHHHHHHcccC------------------
Q 040073 192 RVLKC-GNYQSRSYAIMLLKSIFEVAD--PFQLISV----KQEF-------FTEIVNVLRDH------------------ 239 (407)
Q Consensus 192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~----~~g~-------i~~Lv~lL~~~------------------ 239 (407)
.++-. .+...|..|+..+..+....- .+..|.. -.|+ -++.|.++...
T Consensus 1860 ~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~ 1939 (2235)
T KOG1789|consen 1860 SILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSG 1939 (2235)
T ss_pred HHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHH
Confidence 55543 467777777777777653320 1111100 0000 01111111100
Q ss_pred ---------------CC--------------------------------------CCH----------------------
Q 040073 240 ---------------HQ--------------------------------------FSQ---------------------- 244 (407)
Q Consensus 240 ---------------~~--------------------------------------~~~---------------------- 244 (407)
++ .+|
T Consensus 1940 ~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peq 2019 (2235)
T KOG1789|consen 1940 IIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQ 2019 (2235)
T ss_pred HHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCccc
Confidence 00 000
Q ss_pred HHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH
Q 040073 245 QASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI 323 (407)
Q Consensus 245 ~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l 323 (407)
....--..|+..|-+ ++.-...+-..|.+|.+++.+.-. +..+-..|+.+|..|+.+.--..++..- ..+..++..|
T Consensus 2020 h~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~-n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~m 2097 (2235)
T KOG1789|consen 2020 HELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQ-NTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSM 2097 (2235)
T ss_pred chhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhc-CCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHH
Confidence 001111122222222 222334444569999999888765 4566688999999999977655555543 3455677766
Q ss_pred HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 324 LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 324 ~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
.+. ...--.|+.+|..+.....+ +...++.+.|.++.|+.+|...
T Consensus 2098 kK~-~~~~GLA~EalkR~~~r~~~-eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2098 KKQ-PSLMGLAAEALKRLMKRNTG-ELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred Hhc-chHHHHHHHHHHHHHHHhHH-HHHHHHhccCcHHHHHHHhccc
Confidence 553 33344788999998886544 5888899999999999999643
No 120
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.23 E-value=0.00011 Score=62.42 Aligned_cols=46 Identities=22% Similarity=0.339 Sum_probs=39.5
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|.|-||.+-++.||+..|||.||-.|-.+-... ...|-+|+....-
T Consensus 197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k--g~~C~~Cgk~t~G 242 (259)
T COG5152 197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK--GDECGVCGKATYG 242 (259)
T ss_pred eeehhchhhccchhhhhcchhHHHHHHHHHhcc--CCcceecchhhcc
Confidence 899999999999999999999999997765543 6689999987644
No 121
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.19 E-value=0.00077 Score=42.98 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=35.6
Q ss_pred CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
++++..+++.|+++.|+++|.++ +.+++..++++|.+|+.
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLSS 41 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence 34788899999999999999976 89999999999999873
No 122
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.19 E-value=0.002 Score=48.79 Aligned_cols=88 Identities=22% Similarity=0.200 Sum_probs=66.1
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ 220 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 220 (407)
||.|++.|.++.+ ..++..|+.+|..+. + .. +++.|+.+++++++.+|..|+.+|..+.
T Consensus 1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~--~---------~~--~~~~L~~~l~d~~~~vr~~a~~aL~~i~------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPD-PQVRAEAARALGELG--D---------PE--AIPALIELLKDEDPMVRRAAARALGRIG------- 59 (88)
T ss_dssp HHHHHHHHHTSSS-HHHHHHHHHHHHCCT--H---------HH--HHHHHHHHHTSSSHHHHHHHHHHHHCCH-------
T ss_pred CHHHHHHHhcCCC-HHHHHHHHHHHHHcC--C---------Hh--HHHHHHHHHcCCCHHHHHHHHHHHHHhC-------
Confidence 6889999944333 246888888887432 1 12 6899999999999999999999999872
Q ss_pred hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 221 LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 221 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
...+++.|.+++.++ .+..++..|+.+|.
T Consensus 60 ----~~~~~~~L~~~l~~~--~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 ----DPEAIPALIKLLQDD--DDEVVREAAAEALG 88 (88)
T ss_dssp ----HHHTHHHHHHHHTC---SSHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHcCC--CcHHHHHHHHhhcC
Confidence 235789999999876 25667888888873
No 123
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=97.16 E-value=0.00033 Score=62.54 Aligned_cols=46 Identities=30% Similarity=0.339 Sum_probs=39.5
Q ss_pred cccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccc
Q 040073 9 HFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
+++|||+......||+.. |||.|+|..|...+.......||+-+.+
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence 479999999999999874 9999999999998854335679998876
No 124
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=0.031 Score=55.62 Aligned_cols=204 Identities=14% Similarity=0.092 Sum_probs=137.5
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
.+++..-. ..++.|...|...+.++|..+-.+|.++...=.+....+.....++.||..+++. ++..+..|+.-|.
T Consensus 200 ~~m~~yl~-~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss---~~~iq~~al~Wi~ 275 (675)
T KOG0212|consen 200 LEMISYLP-SLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS---EPEIQLKALTWIQ 275 (675)
T ss_pred HHHHhcch-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC---cHHHHHHHHHHHH
Confidence 34454434 3778888999999999998877776665432222222324445788999999988 9999999988888
Q ss_pred HhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHH---HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073 256 ELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLN---VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASD 332 (407)
Q Consensus 256 ~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~---~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e 332 (407)
....-..+..-..-.|.+..++..+.+.....+++.+.. .|..+......+.. ++-+..|..+-+.+.+.....+-
T Consensus 276 efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri 354 (675)
T KOG0212|consen 276 EFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRI 354 (675)
T ss_pred HHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHH
Confidence 877755544444456777778878876522234443332 35556665555544 33334566777766666688899
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.++..+..+-...+++ --......++.|+.-|. +.++.+-..+-.++.-++.
T Consensus 355 ~~L~Wi~~l~~~~p~q---l~~h~~~if~tLL~tLs-d~sd~vvl~~L~lla~i~~ 406 (675)
T KOG0212|consen 355 AVLNWIILLYHKAPGQ---LLVHNDSIFLTLLKTLS-DRSDEVVLLALSLLASICS 406 (675)
T ss_pred HHHHHHHHHHhhCcch---hhhhccHHHHHHHHhhc-CchhHHHHHHHHHHHHHhc
Confidence 9999999998877763 22223578888888886 6688888888887776665
No 125
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.11 E-value=0.0019 Score=50.22 Aligned_cols=68 Identities=10% Similarity=0.137 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc
Q 040073 114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN 181 (407)
Q Consensus 114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 181 (407)
+...++.|.+++..++.+++.+++.|+||.+++.-.-++...-.+|.|+.++.+|+.++++++++|..
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45678889999999999999999999999999987655544346999999999999999999988875
No 126
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.10 E-value=0.00032 Score=61.86 Aligned_cols=37 Identities=30% Similarity=0.582 Sum_probs=33.3
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT 42 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~ 42 (407)
|-+.=+|.+|++.++|||+.+.||.|||.||.+++..
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 4455599999999999999999999999999999864
No 127
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.00031 Score=65.54 Aligned_cols=46 Identities=22% Similarity=0.500 Sum_probs=39.0
Q ss_pred CcccCccccccCcCc-------------eecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 8 AHFLCPISLQLMRDP-------------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dP-------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
.+-.|-||++-|-+| =-++|||-+--+|++.|.++ ..+||+|+.++
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER--qQTCPICr~p~ 344 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER--QQTCPICRRPV 344 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh--ccCCCcccCcc
Confidence 456899999775443 58999999999999999986 78999999984
No 128
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=97.09 E-value=0.05 Score=48.83 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCChh-HHHhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVSES-YLKSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~-~~~~~i~~~gg~~i 187 (407)
...+.|+.-|.-++.+ ++.|..+.++.+---|-.+|...+.+ +-.+-.++++|+.|...++ +...++...+ ++
T Consensus 94 nRVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~Te--IV 170 (293)
T KOG3036|consen 94 NRVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTE--IV 170 (293)
T ss_pred chHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhh--hH
Confidence 4456788888888877 89999999998766667777654432 2347788999998877554 3345555555 99
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIV-NVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
|..++.+..|+...+.-|+.++..+..++..-..++.... .+.-+| .+.+.+ ++...+.+.++..+|+.
T Consensus 171 PlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p---s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 171 PLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP---SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999877776555544322 222233 233345 89999999999999998
Q ss_pred CCchHHHHHh
Q 040073 260 WGRNRIKAVE 269 (407)
Q Consensus 260 ~~~n~~~~v~ 269 (407)
++..|..+..
T Consensus 248 nprar~aL~~ 257 (293)
T KOG3036|consen 248 NPRARAALRS 257 (293)
T ss_pred CHHHHHHHHh
Confidence 8877766543
No 129
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=97.09 E-value=0.026 Score=56.88 Aligned_cols=187 Identities=19% Similarity=0.222 Sum_probs=115.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK 266 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~ 266 (407)
++.++.-+....+..+..++..|..++...+..-.... ..+||.|.+.|-+. .+++++++..+|.++++.-+|..
T Consensus 256 lpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l-p~iiP~lsevl~DT---~~evr~a~~~~l~~~~svidN~d- 330 (569)
T KOG1242|consen 256 LPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL-PDLIPVLSEVLWDT---KPEVRKAGIETLLKFGSVIDNPD- 330 (569)
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH-hHhhHHHHHHHccC---CHHHHHHHHHHHHHHHHhhccHH-
Confidence 34444333334788999999999988765544333333 47899999999887 99999999999999998777655
Q ss_pred HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCC
Q 040073 267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSA 346 (407)
Q Consensus 267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~ 346 (407)
|.. .+|.|++-+.+. . .-..+++..|..-.--..--..-. +-.+|.|-+-+...+...++.++.+.+|+|..-.
T Consensus 331 I~~--~ip~Lld~l~dp-~-~~~~e~~~~L~~ttFV~~V~~psL--almvpiL~R~l~eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 331 IQK--IIPTLLDALADP-S-CYTPECLDSLGATTFVAEVDAPSL--ALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred HHH--HHHHHHHHhcCc-c-cchHHHHHhhcceeeeeeecchhH--HHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence 222 478888888764 2 123444444433222111000001 1223444444444466778899999999998765
Q ss_pred chHHHHHHHHhChHHHHHHHHhc---CCCHHHHHHHHHHH-HHHHhh
Q 040073 347 TARVLQEMLQVGVVSKLCLVLQV---DASVKTKERAREIL-KLNARA 389 (407)
Q Consensus 347 ~~~~~~~~~~~g~i~~Ll~ll~~---~~~~~~k~~A~~lL-~~l~~~ 389 (407)
|. ..+ +-.++.|+--++. +..|++|.-|+..| .++++.
T Consensus 405 Dp---~~l--apfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~ 446 (569)
T KOG1242|consen 405 DP---KDL--APFLPSLLPGLKENLDDAVPEVRAVAARALGALLERL 446 (569)
T ss_pred CH---HHH--hhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 53 121 2244444433332 34799999999999 555443
No 130
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.08 E-value=0.0089 Score=60.45 Aligned_cols=176 Identities=13% Similarity=0.155 Sum_probs=124.7
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH--hHhhc-cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK--SIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA 216 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~i~~-~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~ 216 (407)
++|.|..+|.+.+.. .+|-|..+|.-++.+..+.- +.... -+ -.+|.+++..++.++.+|..|..++.......
T Consensus 129 lLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~-~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLCELLDSPDYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLN-IMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHHHHhcCCccc--ccchhHHHHHHHHhhhHHHHhhhcccCchH-HhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence 478899999988763 38899999998887654321 11111 01 16889999999999999999999998765443
Q ss_pred CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH
Q 040073 217 DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL 296 (407)
Q Consensus 217 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L 296 (407)
...-.... ..+++.|..+-.+. +++++++.+.+|..|......|..--=.|+|+.+++.-.+. +.++.-+|+...
T Consensus 206 ~qal~~~i-D~Fle~lFalanD~---~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~-dE~VALEACEFw 280 (885)
T KOG2023|consen 206 TQALYVHI-DKFLEILFALANDE---DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV-DENVALEACEFW 280 (885)
T ss_pred cHHHHHHH-HHHHHHHHHHccCC---CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc-chhHHHHHHHHH
Confidence 33322222 35788888888777 99999999999999987555443322246778888777775 788999999999
Q ss_pred HHHhcCHhhHHHHHhc-cCchHHHHHHH
Q 040073 297 DLLCRCAEGRAELLKH-GAGLAVVSKKI 323 (407)
Q Consensus 297 ~~L~~~~~~r~~i~~~-~g~i~~Lv~~l 323 (407)
..+|..+--+..+..+ ...||.|+.-|
T Consensus 281 la~aeqpi~~~~L~p~l~kliPvLl~~M 308 (885)
T KOG2023|consen 281 LALAEQPICKEVLQPYLDKLIPVLLSGM 308 (885)
T ss_pred HHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence 9999988555555433 24566666543
No 131
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.00024 Score=67.07 Aligned_cols=47 Identities=21% Similarity=0.423 Sum_probs=39.4
Q ss_pred ccCccccccCcCc--e-ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDP--V-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dP--v-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+.|-||+|-|.+= | +|||+|.|=..||..|+.+. ...||+|++....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 6999999988753 3 78999999999999999874 5679999986543
No 132
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=97.04 E-value=0.14 Score=50.60 Aligned_cols=195 Identities=17% Similarity=0.050 Sum_probs=121.9
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF 219 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~ 219 (407)
+++.|+..|....++. +...++.++ .... .. .++..|+..|...+..++..++.+|..+-
T Consensus 55 a~~~L~~aL~~d~~~e-v~~~aa~al--~~~~----------~~-~~~~~L~~~L~d~~~~vr~aaa~ALg~i~------ 114 (410)
T TIGR02270 55 ATELLVSALAEADEPG-RVACAALAL--LAQE----------DA-LDLRSVLAVLQAGPEGLCAGIQAALGWLG------ 114 (410)
T ss_pred HHHHHHHHHhhCCChh-HHHHHHHHH--hccC----------Ch-HHHHHHHHHhcCCCHHHHHHHHHHHhcCC------
Confidence 5788888886554422 233333322 1111 11 13788999998888889999999988541
Q ss_pred hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 220 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
. .+..+.|+.+|++. ++.++..++.++.. ......+.|+.+|.+. +..++..|+.+|..+
T Consensus 115 ----~-~~a~~~L~~~L~~~---~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~-d~~Vra~A~raLG~l 174 (410)
T TIGR02270 115 ----G-RQAEPWLEPLLAAS---EPPGRAIGLAALGA-----------HRHDPGPALEAALTHE-DALVRAAALRALGEL 174 (410)
T ss_pred ----c-hHHHHHHHHHhcCC---ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCC-CHHHHHHHHHHHHhh
Confidence 1 35678899999888 89999888877765 1123467888889875 889999999999887
Q ss_pred hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc------------CC-ch-HHHHHHHHh----ChHH
Q 040073 300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF------------SA-TA-RVLQEMLQV----GVVS 361 (407)
Q Consensus 300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~------------~~-~~-~~~~~~~~~----g~i~ 361 (407)
.. ...++.|...+.+.++.++..|+..|..+-.. .+ .. .....+... .+++
T Consensus 175 ~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~ 243 (410)
T TIGR02270 175 PR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAGSRLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQA 243 (410)
T ss_pred cc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHH
Confidence 53 22455566655555677777777766554210 00 00 000111111 3455
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 362 KLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 362 ~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.|..+++. +.+++.+...|..+..
T Consensus 244 ~L~~ll~d---~~vr~~a~~AlG~lg~ 267 (410)
T TIGR02270 244 WLRELLQA---AATRREALRAVGLVGD 267 (410)
T ss_pred HHHHHhcC---hhhHHHHHHHHHHcCC
Confidence 66666663 3477777777766543
No 133
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.94 E-value=0.018 Score=48.51 Aligned_cols=120 Identities=10% Similarity=0.161 Sum_probs=94.0
Q ss_pred hhHHHHHHHcccCCC---CCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc
Q 040073 227 EFFTEIVNVLRDHHQ---FSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR 301 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~---~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~ 301 (407)
|++..|++++.++.. ...+...-++.++..|-.+.- .. ..++...|..++..+.... +..+...|+++|..+..
T Consensus 11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 559999999998710 014677778888888876544 33 3455567788888887653 67899999999999999
Q ss_pred CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 302 CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 302 ~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
+.......+...--++.|+..|...++..+.+|+..+..|....++
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 8877666676677889999988888899999999999999988755
No 134
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.93 E-value=0.022 Score=60.50 Aligned_cols=140 Identities=17% Similarity=0.158 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHHHhCCC-CchHHHH----HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073 244 QQASKAALKLLVELCPW-GRNRIKA----VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV 318 (407)
Q Consensus 244 ~~~~~~A~~aL~~L~~~-~~n~~~~----v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~ 318 (407)
.+-.+.++.||.|+... ++-...+ .--|.++.+...|....++.+...|+.++..+..+.+--..+..+ +.+-.
T Consensus 1739 ~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~ 1817 (2235)
T KOG1789|consen 1739 ETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTT 1817 (2235)
T ss_pred HHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHH
Confidence 34667889999999884 4322222 223778888888887667789999999999999888877777775 45666
Q ss_pred HHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 319 VSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 319 Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
|+. |++.-+..++.++.+|+.+++ +.++..++.+.|++.-++.++-...++..|..|+++|..+-.
T Consensus 1818 LL~-lLHS~PS~R~~vL~vLYAL~S---~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1818 LLT-LLHSQPSMRARVLDVLYALSS---NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred HHH-HHhcChHHHHHHHHHHHHHhc---CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence 666 566668999999999999996 456899999999999999988766788889999999876643
No 135
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.92 E-value=0.00068 Score=62.83 Aligned_cols=50 Identities=20% Similarity=0.474 Sum_probs=40.3
Q ss_pred CCCcccCccccccCcCc---e-ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 6 VPAHFLCPISLQLMRDP---V-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dP---v-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
-...|.||||+..|..- | +.+|||.|+..+|++-- ....||+|++++...
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k---~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK---KSKKCPVCGKPFTEE 163 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc---ccccccccCCccccC
Confidence 35679999999999542 2 44899999999999973 256799999999875
No 136
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=96.92 E-value=0.0017 Score=41.28 Aligned_cols=39 Identities=21% Similarity=0.353 Sum_probs=33.6
Q ss_pred hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC
Q 040073 129 ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN 169 (407)
Q Consensus 129 ~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~ 169 (407)
++++..+++.|+++.|+++|.+.+. .++..|+++|.|++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~--~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDE--EVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHc
Confidence 4588999999999999999996554 46999999999986
No 137
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.85 E-value=0.078 Score=54.68 Aligned_cols=196 Identities=18% Similarity=0.175 Sum_probs=125.9
Q ss_pred CcHHHHHHHhhccCC----CCc-hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073 139 GAIEFLATIITKSDA----GSD-ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF 213 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~----~~~-~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 213 (407)
+++|.|+++|.+.++ ... ....|-..|..++. ..++-|.. + ++|.+-+-+++++..-|+.|+.++..+.
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~---~~~D~Iv~-~--Vl~Fiee~i~~pdwr~reaavmAFGSIl 392 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ---CVGDDIVP-H--VLPFIEENIQNPDWRNREAAVMAFGSIL 392 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH---Hhcccchh-h--hHHHHHHhcCCcchhhhhHHHHHHHhhh
Confidence 678999999976322 111 12223223333332 12233332 3 7888888899999999999999999998
Q ss_pred ccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-h-HHHHHhcCchHHHHHHhhcccchhHHHH
Q 040073 214 EVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-N-RIKAVEGGGVSVLVDLLLDVTERRVCEL 291 (407)
Q Consensus 214 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n-~~~~v~~G~v~~Lv~lL~~~~~~~~~~~ 291 (407)
..++..+..-...+++|.++.++.++ +--++..++|+|..++..-. - -......+.++.+++=|.+ .+.+..+
T Consensus 393 ~gp~~~~Lt~iV~qalp~ii~lm~D~---sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N 467 (859)
T KOG1241|consen 393 EGPEPDKLTPIVIQALPSIINLMSDP---SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASN 467 (859)
T ss_pred cCCchhhhhHHHhhhhHHHHHHhcCc---hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHH
Confidence 87766544333357899999999977 88888999999999987433 1 1112234566667766666 4789999
Q ss_pred HHHHHHHHhcCHh--hHHH----HHhccCchHHHHHHHHcCC-------chhhHHHHHHHHHHhccCCc
Q 040073 292 MLNVLDLLCRCAE--GRAE----LLKHGAGLAVVSKKILRVS-------HAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 292 al~~L~~L~~~~~--~r~~----i~~~~g~i~~Lv~~l~~~s-------~~~~e~a~~~L~~l~~~~~~ 347 (407)
++|++..|+..-. .+.. ... -..+.+|+.|..+. ...+-.|-.+|..+-+.+++
T Consensus 468 ~CWAf~~Laea~~eA~~s~~qt~~~t--~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~ 534 (859)
T KOG1241|consen 468 VCWAFISLAEAAYEAAVSNGQTDPAT--PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD 534 (859)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCccc--hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence 9999999984221 1111 111 12334444444432 34577778888888887765
No 138
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.83 E-value=0.38 Score=49.59 Aligned_cols=142 Identities=16% Similarity=0.189 Sum_probs=86.4
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA 307 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~ 307 (407)
++..|-.++.+. ++..+-.++-|++.+...+. ..|.+. -..+++.|.+. |..++-+|+..|..+.. .++-.
T Consensus 300 CvqKLr~fieds---DqNLKYlgLlam~KI~ktHp---~~Vqa~-kdlIlrcL~Dk-D~SIRlrALdLl~gmVs-kkNl~ 370 (877)
T KOG1059|consen 300 CVQKLRIFIEDS---DQNLKYLGLLAMSKILKTHP---KAVQAH-KDLILRCLDDK-DESIRLRALDLLYGMVS-KKNLM 370 (877)
T ss_pred HHHHHhhhhhcC---CccHHHHHHHHHHHHhhhCH---HHHHHh-HHHHHHHhccC-CchhHHHHHHHHHHHhh-hhhHH
Confidence 455666677777 89999999999999886443 222221 45677888886 89999999999998876 33444
Q ss_pred HHHhccCchHHHHHHHHcCCc-hhhHHHHHHHHHHhccCCchHHHHHHHHh-ChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 308 ELLKHGAGLAVVSKKILRVSH-AASDRAVRILCSVCKFSATARVLQEMLQV-GVVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~~s~-~~~e~a~~~L~~l~~~~~~~~~~~~~~~~-g~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
+|+. .|+..+...+. ..+..-+.-+..+|+.+. -..+.+. =-+..|+++-+-.++.....-|..++..
T Consensus 371 eIVk------~LM~~~~~ae~t~yrdell~~II~iCS~sn----Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv 440 (877)
T KOG1059|consen 371 EIVK------TLMKHVEKAEGTNYRDELLTRIISICSQSN----YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDV 440 (877)
T ss_pred HHHH------HHHHHHHhccchhHHHHHHHHHHHHhhhhh----hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHH
Confidence 4443 45554444332 334444444555565432 2233332 2355666666665666666666666655
Q ss_pred HHh
Q 040073 386 NAR 388 (407)
Q Consensus 386 l~~ 388 (407)
.-|
T Consensus 441 ~iR 443 (877)
T KOG1059|consen 441 AIR 443 (877)
T ss_pred hee
Confidence 444
No 139
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.80 E-value=0.00082 Score=59.33 Aligned_cols=53 Identities=15% Similarity=0.376 Sum_probs=44.7
Q ss_pred CcccCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCc
Q 040073 8 AHFLCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTP 65 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~ 65 (407)
..|.||+|.+.+.+-+ .-+|||.|+..|.|+.... ...||+|+.++.++ ++++
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~--D~v~pv~d~plkdr---diI~ 276 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK--DMVDPVTDKPLKDR---DIIG 276 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc--cccccCCCCcCccc---ceEe
Confidence 4689999999988865 4489999999999998753 78999999999886 6654
No 140
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.00091 Score=61.64 Aligned_cols=50 Identities=22% Similarity=0.453 Sum_probs=42.5
Q ss_pred CCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 6 VPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-|+.=.||+|.+--.+|-++. +|..||..||-++..+ +..||+|+.+..-
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~--~~~CPVT~~p~~v 347 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN--YGHCPVTGYPASV 347 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh--cCCCCccCCcchH
Confidence 455569999999999997776 6999999999999985 7899999987643
No 141
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.05 Score=54.22 Aligned_cols=227 Identities=12% Similarity=0.088 Sum_probs=137.1
Q ss_pred cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C
Q 040073 138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A 216 (407)
Q Consensus 138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~ 216 (407)
.+.+++++..+.+.+. .++..|...|+|++.... .+++..-+ .....+.++....+..++ .++..+-.+-.+ .
T Consensus 83 ~~iv~Pv~~cf~D~d~--~vRyyACEsLYNiaKv~k--~~v~~~Fn-~iFdvL~klsaDsd~~V~-~~aeLLdRLikdIV 156 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDS--QVRYYACESLYNIAKVAK--GEVLVYFN-EIFDVLCKLSADSDQNVR-GGAELLDRLIKDIV 156 (675)
T ss_pred HHhhHHHHHhccCccc--eeeeHhHHHHHHHHHHhc--cCcccchH-HHHHHHHHHhcCCccccc-cHHHHHHHHHHHhc
Confidence 4567888888887665 458899999999875432 22222211 134444444444444444 444444444321 1
Q ss_pred CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHH
Q 040073 217 DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLN 294 (407)
Q Consensus 217 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~ 294 (407)
.....-+.-.++||.|-..+..- ++..+.--..-|+-|-..++- .++. -..++.|..+|.+. +++++..+=.
T Consensus 157 te~~~tFsL~~~ipLL~eriy~~---n~~tR~flv~Wl~~Lds~P~~--~m~~yl~~~ldGLf~~LsD~-s~eVr~~~~t 230 (675)
T KOG0212|consen 157 TESASTFSLPEFIPLLRERIYVI---NPMTRQFLVSWLYVLDSVPDL--EMISYLPSLLDGLFNMLSDS-SDEVRTLTDT 230 (675)
T ss_pred cccccccCHHHHHHHHHHHHhcC---CchHHHHHHHHHHHHhcCCcH--HHHhcchHHHHHHHHHhcCC-cHHHHHHHHH
Confidence 11111222247777777777666 788888888888877665553 2222 24667778888876 6666644443
Q ss_pred ----HHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 295 ----VLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 295 ----~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
.|..+...+++- +....++.++.-+....+..+..|+..+.....-.++.-... -.|.+..++..+...
T Consensus 231 ~l~~fL~eI~s~P~s~----d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~---~s~il~~iLpc~s~~ 303 (675)
T KOG0212|consen 231 LLSEFLAEIRSSPSSM----DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLY---LSGILTAILPCLSDT 303 (675)
T ss_pred HHHHHHHHHhcCcccc----CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhh---hhhhhhhcccCCCCC
Confidence 444555555432 223456777776665568889999999998888766542222 368888888888755
Q ss_pred CCHHHHHHHHHHH
Q 040073 371 ASVKTKERAREIL 383 (407)
Q Consensus 371 ~~~~~k~~A~~lL 383 (407)
.....++.|+.+-
T Consensus 304 e~~~i~~~a~~~n 316 (675)
T KOG0212|consen 304 EEMSIKEYAQMVN 316 (675)
T ss_pred ccccHHHHHHHHH
Confidence 4445777776644
No 142
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.65 E-value=0.094 Score=53.31 Aligned_cols=179 Identities=16% Similarity=0.101 Sum_probs=112.5
Q ss_pred HHHHHHhhccCCCCchHHHHHHHH---HhcCC--Ch-h-HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073 142 EFLATIITKSDAGSDECDEALSIL---YHLNV--SE-S-YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE 214 (407)
Q Consensus 142 ~~Lv~lL~~~~~~~~~~~~a~~~L---~~L~~--~~-~-~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 214 (407)
...++.|.+++. .++..|+.++ .|..- .+ + +.++... .++..+...+...+..+|..|+.+|+.+-.
T Consensus 237 ~~A~~~lsD~~e--~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D----~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~ 310 (823)
T KOG2259|consen 237 SRAVKHLSDDYE--DVRKAAVQLVSVWGNRCPAPLERESEEEKLKD----AAFSSVCRAVRDRSLSVRVEAAKALGEFEQ 310 (823)
T ss_pred HHHHHHhcchHH--HHHHHHHHHHHHHHhcCCCcccchhhhhhhHH----HHHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence 445666766655 4577775544 44441 11 1 1233332 267788888888888888888888876643
Q ss_pred cCCc-------hhhhh-------------------------------------------chhhhHHHHHHHcccCCCCCH
Q 040073 215 VADP-------FQLIS-------------------------------------------VKQEFFTEIVNVLRDHHQFSQ 244 (407)
Q Consensus 215 ~~~~-------~~~i~-------------------------------------------~~~g~i~~Lv~lL~~~~~~~~ 244 (407)
..+. ++.+. ...|+..++|.=|.++ -.
T Consensus 311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE---f~ 387 (823)
T KOG2259|consen 311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE---FY 387 (823)
T ss_pred hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH---HH
Confidence 3221 00000 0123334455555554 56
Q ss_pred HHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073 245 QASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL 324 (407)
Q Consensus 245 ~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~ 324 (407)
+++++|...++.|+.+.+.- .. .++..|+.++.+. ...++..|..+|..++.+-.-+ + ..++.+.+.|.
T Consensus 388 EVR~AAV~Sl~~La~ssP~F---A~-~aldfLvDMfNDE-~~~VRL~ai~aL~~Is~~l~i~----e--eql~~il~~L~ 456 (823)
T KOG2259|consen 388 EVRRAAVASLCSLATSSPGF---AV-RALDFLVDMFNDE-IEVVRLKAIFALTMISVHLAIR----E--EQLRQILESLE 456 (823)
T ss_pred HHHHHHHHHHHHHHcCCCCc---HH-HHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHheec----H--HHHHHHHHHHH
Confidence 89999999999999854431 11 2588999999886 7889999999999998863322 2 23566777777
Q ss_pred cCCchhhHHHHHHHHH
Q 040073 325 RVSHAASDRAVRILCS 340 (407)
Q Consensus 325 ~~s~~~~e~a~~~L~~ 340 (407)
+.+.+.++..-..|.+
T Consensus 457 D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 457 DRSVDVREALRELLKN 472 (823)
T ss_pred hcCHHHHHHHHHHHHh
Confidence 7777777766555544
No 143
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.63 E-value=0.23 Score=51.42 Aligned_cols=275 Identities=13% Similarity=0.116 Sum_probs=161.4
Q ss_pred hhHHHHHHHhcCCC--hHHHHHHHHHHHHhhh-ChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC---
Q 040073 98 TQIVKILNDAKKSP--STGRKCLRRLRSITLQ-SERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNV--- 170 (407)
Q Consensus 98 ~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~-~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~--- 170 (407)
+-+..+++...... -.+..++++|..++.+ +++ ..... +.++-.++.=......+..++-.|+.+|.+--.
T Consensus 129 ~li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~ 206 (859)
T KOG1241|consen 129 ELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTK 206 (859)
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHH
Confidence 34455555554433 4678899999999987 343 22223 345556666665555555679999999987211
Q ss_pred ---ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHH
Q 040073 171 ---SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQA 246 (407)
Q Consensus 171 ---~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~ 246 (407)
.++..+.+ .+....+.-++++.+++..|..+|-.|... .+.....+.. ..+..-+.-+++. ++++
T Consensus 207 ~nF~~E~ern~-------iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~-alfaitl~amks~---~deV 275 (859)
T KOG1241|consen 207 ANFNNEMERNY-------IMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQ-ALFAITLAAMKSD---NDEV 275 (859)
T ss_pred HhhccHhhhce-------eeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCC---cHHH
Confidence 11111121 344455666777888888888888877543 2333333332 2334444555555 6666
Q ss_pred HHHHHHHHHHhCCCCc------------h----HHHHHh---cCchHHHHHHhhcc------------------------
Q 040073 247 SKAALKLLVELCPWGR------------N----RIKAVE---GGGVSVLVDLLLDV------------------------ 283 (407)
Q Consensus 247 ~~~A~~aL~~L~~~~~------------n----~~~~v~---~G~v~~Lv~lL~~~------------------------ 283 (407)
.-.|...=.++|.-+- + ...+.+ .+.+|.|+++|...
T Consensus 276 alQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~ 355 (859)
T KOG1241|consen 276 ALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQ 355 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHH
Confidence 6666655554443100 0 011111 14566677766541
Q ss_pred --------------------cchhHHHHHHHHHHHHhcCHh--hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073 284 --------------------TERRVCELMLNVLDLLCRCAE--GRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV 341 (407)
Q Consensus 284 --------------------~~~~~~~~al~~L~~L~~~~~--~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l 341 (407)
++-.-++.++.++..+-..++ -...++ .+++|.++.+|.+.+-.+++.+...|..+
T Consensus 356 ~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI 433 (859)
T KOG1241|consen 356 CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRI 433 (859)
T ss_pred HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHH
Confidence 011223333344443333332 122233 35799999988866677788899999999
Q ss_pred hccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 342 CKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 342 ~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
+.+.++ ....+..-.+.++.|+.-|+. .|+.-.++.+.+-.|.++.
T Consensus 434 ~d~l~e-~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~ 479 (859)
T KOG1241|consen 434 ADFLPE-AIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAA 479 (859)
T ss_pred Hhhchh-hcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHH
Confidence 987654 244455556788888888873 6999999999999998753
No 144
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.61 E-value=0.11 Score=43.98 Aligned_cols=120 Identities=13% Similarity=0.183 Sum_probs=94.8
Q ss_pred HhHhhccchhhHHHHHHHHhcCCh------hHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNY------QSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKA 249 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~------~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~ 249 (407)
.+++...| +..|++++.++.. +....+..++.+|..+.-..+.... ..+|...+..+... ..+..+.+.
T Consensus 5 ~EFI~~~G---l~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~-~~d~~i~q~ 79 (160)
T PF11841_consen 5 QEFISRDG---LTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSS-AMDASILQR 79 (160)
T ss_pred HHHHhccC---HHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccc-cccchHHHH
Confidence 35666543 9999999998763 6667788888899887766676655 46899999998754 136889999
Q ss_pred HHHHHHHhCCCCchHHHHHhc-CchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 250 ALKLLVELCPWGRNRIKAVEG-GGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 250 A~~aL~~L~~~~~n~~~~v~~-G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
|+..|-++..+.+.....|+. =-++.|+..|... +.+++.++++.+-.|-.
T Consensus 80 sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~-~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 80 SLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVS-NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC-CHHHHHHHHHHHHHHHh
Confidence 999999999988776666664 4788999999986 88999999999988765
No 145
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.56 Score=47.24 Aligned_cols=224 Identities=18% Similarity=0.153 Sum_probs=116.0
Q ss_pred chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch----------
Q 040073 156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK---------- 225 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~---------- 225 (407)
.+.-+++.++..++..+- .-+.+. . ++..|-.+|++.....|=.|.++|..|+...+.+...+..
T Consensus 279 mV~lE~Ar~v~~~~~~nv-~~~~~~-~---~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~N 353 (898)
T COG5240 279 MVFLEAARAVCALSEENV-GSQFVD-Q---TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDEN 353 (898)
T ss_pred hhhHHHHHHHHHHHHhcc-CHHHHH-H---HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhccc
Confidence 357777777777664331 123332 1 5778888888889999999999999998765443322211
Q ss_pred ----------------hhhHHHHHHHccc---CCCCCHHHHHHHHHHHHHhCCCCc-hHHH--------HHhcCc-----
Q 040073 226 ----------------QEFFTEIVNVLRD---HHQFSQQASKAALKLLVELCPWGR-NRIK--------AVEGGG----- 272 (407)
Q Consensus 226 ----------------~g~i~~Lv~lL~~---~~~~~~~~~~~A~~aL~~L~~~~~-n~~~--------~v~~G~----- 272 (407)
..-|..|++++-+ + .++..+..+..|++.||..-+ -+.. +.++|+
T Consensus 354 r~IstyAITtLLKTGt~e~idrLv~~I~sfvhD--~SD~FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~ 431 (898)
T COG5240 354 RTISTYAITTLLKTGTEETIDRLVNLIPSFVHD--MSDGFKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKK 431 (898)
T ss_pred ccchHHHHHHHHHcCchhhHHHHHHHHHHHHHh--hccCceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHH
Confidence 0123333332211 1 144555666777888877433 2222 223443
Q ss_pred --hHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc--------------CchHHHHHHHHcCCchhhHHHHH
Q 040073 273 --VSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG--------------AGLAVVSKKILRVSHAASDRAVR 336 (407)
Q Consensus 273 --v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~--------------g~i~~Lv~~l~~~s~~~~e~a~~ 336 (407)
|.++..++.. .++.+|.|+..|...-..-+.-+-.++.- ..|..+...+.=.+.-.+..|+.
T Consensus 432 ~~Vdaisd~~~~--~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~ 509 (898)
T COG5240 432 YMVDAISDAMEN--DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQ 509 (898)
T ss_pred HHHHHHHHHHhh--CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHH
Confidence 3344444433 45677777776665544222221111100 01111111111112334555666
Q ss_pred HHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCCCCC
Q 040073 337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSPCVP 397 (407)
Q Consensus 337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~~~~ 397 (407)
+|...+....+. +..+ -....|-+.+. +.++++|.+|+-+|+.++- ..-|+|
T Consensus 510 aLskf~ln~~d~-~~~~----sv~~~lkRcln-D~DdeVRdrAsf~l~~~~~---~da~~p 561 (898)
T COG5240 510 ALSKFALNISDV-VSPQ----SVENALKRCLN-DQDDEVRDRASFLLRNMRL---SDACEP 561 (898)
T ss_pred HHHHhccCcccc-ccHH----HHHHHHHHHhh-cccHHHHHHHHHHHHhhhh---hhhhhc
Confidence 665555433321 2222 22233444555 6689999999999999874 444555
No 146
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=96.59 E-value=0.32 Score=49.21 Aligned_cols=255 Identities=13% Similarity=0.111 Sum_probs=153.6
Q ss_pred HhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh-cCCChhHHHhHhhccc
Q 040073 106 DAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH-LNVSESYLKSIVINNG 183 (407)
Q Consensus 106 ~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~-L~~~~~~~~~~i~~~g 183 (407)
.+.... ..+..+...+..+.+. -.-..+.+.+.+..|...+.+..... -++ +...-.+ .+.+ .. ...+ .
T Consensus 142 ll~~~~~~~~~~aa~~~ag~v~g--~~i~~~~~~~~l~~l~~ai~dk~~~~-~re-~~~~a~~~~~~~---Lg-~~~E-P 212 (569)
T KOG1242|consen 142 LLTSTKIAERAGAAYGLAGLVNG--LGIESLKEFGFLDNLSKAIIDKKSAL-NRE-AALLAFEAAQGN---LG-PPFE-P 212 (569)
T ss_pred HhccccHHHHhhhhHHHHHHHcC--cHHhhhhhhhHHHHHHHHhcccchhh-cHH-HHHHHHHHHHHh---cC-CCCC-c
Confidence 334444 6677777777777654 23455666777888877777655422 133 2221111 1100 00 0111 2
Q ss_pred hhhHHHHHHHHh---cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 184 EEFLESLMRVLK---CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 184 g~~i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
+ .++.+..+|. +....+|+.|..+...+...-.. .+.. -+++.++.-+... ....+.+++..|..++..
T Consensus 213 y-iv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK-~llpsll~~l~~~---kWrtK~aslellg~m~~~ 284 (569)
T KOG1242|consen 213 Y-IVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YAVK-LLLPSLLGSLLEA---KWRTKMASLELLGAMADC 284 (569)
T ss_pred h-HHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---chhh-HhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHh
Confidence 1 5555555554 45778888888888776532111 1111 2455565555444 567788888888888877
Q ss_pred CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS 340 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 340 (407)
.+..-...-..+||.|.+.|-+. .+++++.+..+|..++..-++.. |.. .+|.|++-+.+.+. ....++..|..
T Consensus 285 ap~qLs~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d-I~~---~ip~Lld~l~dp~~-~~~e~~~~L~~ 358 (569)
T KOG1242|consen 285 APKQLSLCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD-IQK---IIPTLLDALADPSC-YTPECLDSLGA 358 (569)
T ss_pred chHHHHHHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH-HHH---HHHHHHHHhcCccc-chHHHHHhhcc
Confidence 77777777778999999999886 89999999999999988666554 322 46777776654322 33344444433
Q ss_pred HhccCCchHHHHHHHHhChHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhcc
Q 040073 341 VCKFSATARVLQEMLQVGVVSKLCLVLQVD---ASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 341 l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~---~~~~~k~~A~~lL~~l~~~~~ 391 (407)
-.- ..-+.+-.+..++.+|+.+ -+..++++++.+..++.+.+.
T Consensus 359 ttF--------V~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lve 404 (569)
T KOG1242|consen 359 TTF--------VAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVE 404 (569)
T ss_pred eee--------eeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhc
Confidence 221 1112223444444444432 377888999999999988763
No 147
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.59 E-value=0.004 Score=42.71 Aligned_cols=55 Identities=20% Similarity=0.175 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 199 YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 199 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
+.+|..|+++|.+++........-.. ..+++.|+.+|+++ +++++..|+++|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~---~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD---DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS---SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC---CHHHHHHHHHHHhcC
Confidence 35789999999998755443333333 46899999999988 889999999999875
No 148
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=0.064 Score=57.14 Aligned_cols=200 Identities=14% Similarity=0.121 Sum_probs=142.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~ 264 (407)
..|-++++|++...+.|.--+-+=..+...+.+++.-..+.++-...++.|..+.+.+++-+..|+-.|..++.+ ..++
T Consensus 513 IFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ 592 (1387)
T KOG1517|consen 513 IFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQ 592 (1387)
T ss_pred hHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhH
Confidence 899999999999999998888888888777788876655555567778888764335678888889999999885 5588
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
+...+.+.+..=++.|.++..+-++.-++-.|..|=.+ ++.|..=++ .++...|+..|.+..++++..|+-+|..+-.
T Consensus 593 ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r-~~AhekL~~~LsD~vpEVRaAAVFALgtfl~ 671 (1387)
T KOG1517|consen 593 KACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRR-DNAHEKLILLLSDPVPEVRAAAVFALGTFLS 671 (1387)
T ss_pred HHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhcccc-ccHHHHHHHHhcCccHHHHHHHHHHHHHHhc
Confidence 88889998888888887743456667777777777553 444443334 4677888887777779999999999998887
Q ss_pred cC----Cc-hHHH-------------HHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 344 FS----AT-ARVL-------------QEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 344 ~~----~~-~~~~-------------~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.. .+ ...+ +.++..| ...|+.+++ ++++-.+..-+..|.-+..
T Consensus 672 ~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~-~~~ll~~vs-dgsplvr~ev~v~ls~~~~ 732 (1387)
T KOG1517|consen 672 NGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKG-LMSLLALVS-DGSPLVRTEVVVALSHFVV 732 (1387)
T ss_pred ccccccchhhhhhhhhhcchhhhhhHHHHHHhh-HHHHHHHHh-ccchHHHHHHHHHHHHHHH
Confidence 52 11 1111 1122222 235666665 6788888887777766654
No 149
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.096 Score=52.06 Aligned_cols=191 Identities=12% Similarity=0.032 Sum_probs=127.5
Q ss_pred HHHHHHHHHhcCCChh--HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073 158 CDEALSILYHLNVSES--YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~--~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 235 (407)
..-+++++...+.+.. -.+.-+..+. +.++|+++|++++..+.--+...+.++.-.-++-+.-+...|+|..|+++
T Consensus 404 l~~~a~~l~LkS~SrSV~~LRTgL~d~~--I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~ 481 (743)
T COG5369 404 LDFVAIVLFLKSMSRSVTFLRTGLLDYP--IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNL 481 (743)
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhccccc--hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHH
Confidence 4555666665555432 2233344454 88999999988766666677777888765555555555557999999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPWGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH- 312 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~- 312 (407)
+.++ ++..+++..|.|+.+.-+.++ +.++...-++..+++...+. .-.+++.++.+|.|+..+..--.+..+-
T Consensus 482 v~sK---DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv~ 557 (743)
T COG5369 482 VMSK---DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDVF 557 (743)
T ss_pred hhcc---hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCc-ccccHHHHHHHHHhcccccccccccceeE
Confidence 9988 889999999999999886553 44555555689999988775 6788999999999998733210111110
Q ss_pred cCch------HHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH
Q 040073 313 GAGL------AVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ 356 (407)
Q Consensus 313 ~g~i------~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~ 356 (407)
-... ..|++.+...++-..+..+-+|.+++..+.+ ....+++
T Consensus 558 ~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~--l~~~V~~ 605 (743)
T COG5369 558 IKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDT--LDYIVQS 605 (743)
T ss_pred EecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccch--HHHHHHh
Confidence 0111 2344444445666677778888888875544 4444443
No 150
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.54 E-value=0.00085 Score=64.38 Aligned_cols=42 Identities=21% Similarity=0.549 Sum_probs=36.1
Q ss_pred cCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
+||+|++=|.+-| ++.|.|+|--+|+.+||. .+||+|+...+
T Consensus 177 TCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~----~scpvcR~~q~ 222 (493)
T KOG0804|consen 177 TCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD----SSCPVCRYCQS 222 (493)
T ss_pred CcchhHhhcCccccceeeeecccccchHHHhhccc----CcChhhhhhcC
Confidence 8999999999887 567999999999999984 47999986543
No 151
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.0016 Score=61.82 Aligned_cols=41 Identities=22% Similarity=0.494 Sum_probs=36.2
Q ss_pred ccCccccccCcC---ceecCCcccccHHHHHHHHhcCCC--CCCccc
Q 040073 10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKN--NTCPVT 51 (407)
Q Consensus 10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~--~~cP~~ 51 (407)
|.|||..+--.| |+.+.|||..+|.+|.+-..+ |. +.||.|
T Consensus 335 F~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~n-g~~sfKCPYC 380 (394)
T KOG2817|consen 335 FICPVLKEQTSDENPPMMLICGHVISKDALNRLSKN-GSQSFKCPYC 380 (394)
T ss_pred eecccchhhccCCCCCeeeeccceecHHHHHHHhhC-CCeeeeCCCC
Confidence 699998887766 999999999999999998765 46 889999
No 152
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.51 E-value=0.005 Score=42.23 Aligned_cols=55 Identities=20% Similarity=0.077 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 244 QQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
+.++..|+++|.+++........-....+++.|+.+|.+. +..++..|+.+|.+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDD-DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence 4688999999999887666555555567899999999886 679999999999865
No 153
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.49 E-value=0.64 Score=48.53 Aligned_cols=140 Identities=14% Similarity=0.059 Sum_probs=71.4
Q ss_pred HHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccc
Q 040073 105 NDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNG 183 (407)
Q Consensus 105 ~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g 183 (407)
+.|.+++ -++.-|+..|.+++.. +-.|+. .|-+.++|.+.++ .++..|+.++..+-...++..+.
T Consensus 114 nDL~s~nq~vVglAL~alg~i~s~-Emardl------apeVe~Ll~~~~~--~irKKA~Lca~r~irK~P~l~e~----- 179 (866)
T KOG1062|consen 114 NDLNSSNQYVVGLALCALGNICSP-EMARDL------APEVERLLQHRDP--YIRKKAALCAVRFIRKVPDLVEH----- 179 (866)
T ss_pred hhccCCCeeehHHHHHHhhccCCH-HHhHHh------hHHHHHHHhCCCH--HHHHHHHHHHHHHHHcCchHHHH-----
Confidence 3445666 6667788888887653 222322 3556677776554 34666655444433222222221
Q ss_pred hhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc----C--------CCCCHHHHHHHH
Q 040073 184 EEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD----H--------HQFSQQASKAAL 251 (407)
Q Consensus 184 g~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~----~--------~~~~~~~~~~A~ 251 (407)
+++....+|.+.+..+.......+..++........-.. ..++.||..|++ + +-.+|-.+-..+
T Consensus 180 --f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr--~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iL 255 (866)
T KOG1062|consen 180 --FVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR--DLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRIL 255 (866)
T ss_pred --hhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHH
Confidence 344455566655666666666666666554332222222 244445555442 0 002455666666
Q ss_pred HHHHHhCCCCc
Q 040073 252 KLLVELCPWGR 262 (407)
Q Consensus 252 ~aL~~L~~~~~ 262 (407)
+.|+-|-.++.
T Consensus 256 rlLriLGq~d~ 266 (866)
T KOG1062|consen 256 RLLRILGQNDA 266 (866)
T ss_pred HHHHHhcCCCc
Confidence 66666655544
No 154
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.39 E-value=0.072 Score=54.81 Aligned_cols=148 Identities=11% Similarity=0.057 Sum_probs=97.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh--hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ--LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN 263 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n 263 (407)
.+..+.+.|++.+..+|++|+.++..|+..-..+. ..+..-| -.|.+.|... ++++.-..+.||+.+.....-
T Consensus 800 i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgee---ypEvLgsILgAikaI~nvigm 874 (1172)
T KOG0213|consen 800 ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEE---YPEVLGSILGAIKAIVNVIGM 874 (1172)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcc---cHHHHHHHHHHHHHHHHhccc
Confidence 45567788999999999999999999875433332 2222234 2367788777 898888888888777653321
Q ss_pred -HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh----HHHHHhccCchHHHHHHHHcCCchhhHHHHHHH
Q 040073 264 -RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG----RAELLKHGAGLAVVSKKILRVSHAASDRAVRIL 338 (407)
Q Consensus 264 -~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~----r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L 338 (407)
+..-=-.|.+|.|.-.|++. ...+++++...+..+|..... |.=+.-+ --|+.+|...+...+..|+..+
T Consensus 875 ~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf 949 (1172)
T KOG0213|consen 875 TKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF 949 (1172)
T ss_pred cccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence 11101136789999999887 789999999999999874422 1111111 2356656556666677777666
Q ss_pred HHHhc
Q 040073 339 CSVCK 343 (407)
Q Consensus 339 ~~l~~ 343 (407)
..+++
T Consensus 950 G~Iak 954 (1172)
T KOG0213|consen 950 GYIAK 954 (1172)
T ss_pred hHHHH
Confidence 66654
No 155
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.002 Score=57.69 Aligned_cols=55 Identities=22% Similarity=0.392 Sum_probs=44.4
Q ss_pred cccCccccccCcCce----------ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 9 HFLCPISLQLMRDPV----------TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv----------~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
+=.|.+|++-+.+-| +++|+|+|---||.-|..-+...+||.|++..+-. .+..|
T Consensus 224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~---rmfsn 288 (328)
T KOG1734|consen 224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK---RMFSN 288 (328)
T ss_pred cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh---hhccC
Confidence 357999998777766 88999999999999999876578999999876542 44455
No 156
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=96.30 E-value=0.0034 Score=42.18 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=26.3
Q ss_pred cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCcccccc
Q 040073 9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
.+.|||+...|+-||-. .|-|. ||-...-+...+.+...||+|+++
T Consensus 2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence 47899999999999966 58876 777555554444446789999864
No 157
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.29 E-value=0.78 Score=44.07 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=105.3
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
..+..+++.+.+.+ ..+..+...+..+... -+++.|..+|.+.+. .++..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~--~vr~~a~~aLg~~~------- 102 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDP--RVRDAAADALGELG------- 102 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCH--HHHHHHHHHHHccC-------
Confidence 34566777777765 7777777775555332 147888899987766 45777777554422
Q ss_pred hHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH----------
Q 040073 177 SIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ---------- 245 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~---------- 245 (407)
.. ..++.|+.+|+ +.+..+|..++.+|..+-.. ..+.+|+..+++. ...
T Consensus 103 ----~~--~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~---~~~~a~~~~~~~~ 162 (335)
T COG1413 103 ----DP--EAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDE---DSGSAAAALDAAL 162 (335)
T ss_pred ----Ch--hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccc---hhhhhhhhccchH
Confidence 11 26889999998 48999999999999998421 2378888888876 322
Q ss_pred --HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 246 --ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 246 --~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
.+..++.+|..+ .+.-+++.+...+.+. ...++..|..+|..+....
T Consensus 163 ~~~r~~a~~~l~~~----------~~~~~~~~l~~~l~~~-~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 163 LDVRAAAAEALGEL----------GDPEAIPLLIELLEDE-DADVRRAAASALGQLGSEN 211 (335)
T ss_pred HHHHHHHHHHHHHc----------CChhhhHHHHHHHhCc-hHHHHHHHHHHHHHhhcch
Confidence 233333333322 2234678888888886 6788899999999887754
No 158
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=96.24 E-value=0.0052 Score=41.12 Aligned_cols=42 Identities=26% Similarity=0.496 Sum_probs=33.9
Q ss_pred cCccccc--cCcCceecCCc-----ccccHHHHHHHHhcCCCCCCcccc
Q 040073 11 LCPISLQ--LMRDPVTVSTG-----ITYDRVNIERWLFTCKNNTCPVTK 52 (407)
Q Consensus 11 ~Cpi~~~--~~~dPv~~~~g-----~t~~r~~i~~~~~~~~~~~cP~~~ 52 (407)
.|-||.+ --.+|.+.||. |-|=+.|+++|+...++.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 3788885 55778888874 678899999999876677899985
No 159
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.22 E-value=0.12 Score=47.15 Aligned_cols=153 Identities=15% Similarity=0.164 Sum_probs=109.1
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCC---chHHHHHHHHHhcCCCh-hHHHhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGS---DECDEALSILYHLNVSE-SYLKSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~---~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i 187 (407)
...+.|+.-|..+|.+ ++.|..+.++...--|--+|...+.+. -.+-..+++++.|...+ .+...++...+ .+
T Consensus 65 nRVcnaLaLlQ~vAsh-petr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tE--ii 141 (262)
T PF04078_consen 65 NRVCNALALLQCVASH-PETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTE--II 141 (262)
T ss_dssp HHHHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTT--HH
T ss_pred HHHHHHHHHHHHHHcC-hHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhc--hH
Confidence 3346788888888886 899999999998877888887665532 24677888898887754 33456666655 99
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
|...+.++.|+.-.|..|+-++..+..++..-..+..... ++..+|.-+... .++...+...++-..|+.+
T Consensus 142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~--pS~RLLKhIIrCYlRLsdn 219 (262)
T PF04078_consen 142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQ--PSPRLLKHIIRCYLRLSDN 219 (262)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS----HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccC--CChhHHHHHHHHHHHHccC
Confidence 9999999999999999999999998877765555544322 333344333333 3899999999999999999
Q ss_pred CchHHHHHh
Q 040073 261 GRNRIKAVE 269 (407)
Q Consensus 261 ~~n~~~~v~ 269 (407)
+..+..+..
T Consensus 220 prar~aL~~ 228 (262)
T PF04078_consen 220 PRAREALRQ 228 (262)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988887765
No 160
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.12 E-value=1.4 Score=45.50 Aligned_cols=103 Identities=14% Similarity=0.128 Sum_probs=61.0
Q ss_pred HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc
Q 040073 103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN 181 (407)
Q Consensus 103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 181 (407)
+-..|.+.+ -...-|+.++.++-. .++++.+.. -+-++|.+++....++..|+-.|..|-...+ +++.
T Consensus 116 iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~~~~vkqkaALclL~L~r~sp---Dl~~- 184 (938)
T KOG1077|consen 116 IKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSSMDYVKQKAALCLLRLFRKSP---DLVN- 184 (938)
T ss_pred HHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcchHHHHHHHHHHHHHHHhcCc---cccC-
Confidence 334555666 556678888888743 344544432 2236777766543344444333333333332 3333
Q ss_pred cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 182 NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 182 ~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
.| .-...++.+|......+...++..+..|+...+
T Consensus 185 ~~-~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 185 PG-EWAQRIVHLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred hh-hHHHHHHHHhCccccceeeehHHHHHHHHHcCC
Confidence 23 378899999988777788888888888876544
No 161
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.06 E-value=0.66 Score=44.56 Aligned_cols=155 Identities=17% Similarity=0.101 Sum_probs=102.8
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
-.++.+++++.+.+. .++..|...+..+ ... .+++.+..+|...+..+|..|+.+|..+-
T Consensus 43 ~~~~~~~~~l~~~~~--~vr~~aa~~l~~~-----------~~~--~av~~l~~~l~d~~~~vr~~a~~aLg~~~----- 102 (335)
T COG1413 43 EAADELLKLLEDEDL--LVRLSAAVALGEL-----------GSE--EAVPLLRELLSDEDPRVRDAAADALGELG----- 102 (335)
T ss_pred hhHHHHHHHHcCCCH--HHHHHHHHHHhhh-----------chH--HHHHHHHHHhcCCCHHHHHHHHHHHHccC-----
Confidence 357788888887743 3466666653321 111 26889999999999999999999776652
Q ss_pred hhhhhchhhhHHHHHHHccc-CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchh----------
Q 040073 219 FQLISVKQEFFTEIVNVLRD-HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR---------- 287 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~---------- 287 (407)
. ...++.|+.++.+ . +..++..++.+|..+-. ..++.+|+..+.+. ...
T Consensus 103 -----~-~~a~~~li~~l~~d~---~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~-~~~~a~~~~~~~~ 162 (335)
T COG1413 103 -----D-PEAVPPLVELLENDE---NEGVRAAAARALGKLGD----------ERALDPLLEALQDE-DSGSAAAALDAAL 162 (335)
T ss_pred -----C-hhHHHHHHHHHHcCC---cHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccc-hhhhhhhhccchH
Confidence 1 2358999999985 5 89999999999998743 12377888888774 211
Q ss_pred --HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 288 --VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 288 --~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
++..+...|..+ .+...++.+...+.......+..|..+|..+...
T Consensus 163 ~~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 163 LDVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 122222222211 1234567777766666677888888888877754
No 162
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=96.05 E-value=0.24 Score=48.65 Aligned_cols=152 Identities=16% Similarity=0.225 Sum_probs=106.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCC----chhhhhchhhhHHHHHHHcccCCC----CCHHHHHHHHHHHHHhCC
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVAD----PFQLISVKQEFFTEIVNVLRDHHQ----FSQQASKAALKLLVELCP 259 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~g~i~~Lv~lL~~~~~----~~~~~~~~A~~aL~~L~~ 259 (407)
..+..+++..+.+-|-.|.-.+..+...++ +++.++...| .+.|=++|..++. ++.--+..+...|.-.|+
T Consensus 14 ~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVG-f~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 14 DDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVG-FHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhc-cchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 345566666666666667667777776554 4556777666 6888888875421 234566677788888898
Q ss_pred CCc--hHHHHHhcCchHHHHHHhhcccchh------HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chh
Q 040073 260 WGR--NRIKAVEGGGVSVLVDLLLDVTERR------VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAA 330 (407)
Q Consensus 260 ~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~------~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~ 330 (407)
.++ ....+++ .||.|.+.+..+.+++ +.+.+-..|..++.++.|.+.++. .||++.+-++-.-.+ ...
T Consensus 93 ~pElAsh~~~v~--~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~~~~~Q~y~~~~~~~d 169 (698)
T KOG2611|consen 93 VPELASHEEMVS--RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGLRVIAQMYELPDGSHD 169 (698)
T ss_pred ChhhccCHHHHH--hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCchHHHHHHHhCCCCchh
Confidence 776 5566666 4999999998764444 789999999999999999999988 689999887433322 445
Q ss_pred hHHHHHHHHHHhc
Q 040073 331 SDRAVRILCSVCK 343 (407)
Q Consensus 331 ~e~a~~~L~~l~~ 343 (407)
.+.|+.++.....
T Consensus 170 ~alal~Vlll~~~ 182 (698)
T KOG2611|consen 170 MALALKVLLLLVS 182 (698)
T ss_pred HHHHHHHHHHHHH
Confidence 5666666655443
No 163
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=1.5 Score=41.36 Aligned_cols=272 Identities=13% Similarity=0.088 Sum_probs=164.9
Q ss_pred HhcCCC-hHHHHHHHHHHHHhhhChhH----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073 106 DAKKSP-STGRKCLRRLRSITLQSERN----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180 (407)
Q Consensus 106 ~L~~~~-~~~~~al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 180 (407)
-|..++ .++.-+++.+..+..+++.| ...++.+|..+.++..+...++ .+...|...|..++........++-
T Consensus 90 GLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd--eVAkAAiesikrialfpaaleaiFe 167 (524)
T KOG4413|consen 90 GLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD--EVAKAAIESIKRIALFPAALEAIFE 167 (524)
T ss_pred cccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH--HHHHHHHHHHHHHHhcHHHHHHhcc
Confidence 344444 66666777777777776543 2344578999999999987776 4577788888888877654434333
Q ss_pred ccchhhHH--HHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 181 NNGEEFLE--SLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 181 ~~gg~~i~--~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
.+ ... .+..+-..-+.-.|......+-.+.+.......-+...|.+..|..=|+.. .+.-++.+.+...+.|+
T Consensus 168 Se---llDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGt--eDtLVianciElvteLa 242 (524)
T KOG4413|consen 168 SE---LLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGT--EDTLVIANCIELVTELA 242 (524)
T ss_pred cc---cCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCC--cceeehhhHHHHHHHHH
Confidence 22 222 334444445666777777787777766554444455568777777666542 16677888888889999
Q ss_pred CCCchHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhcCHh----hHHHHHhc-cCchHHHHHHHHcCCchhhH
Q 040073 259 PWGRNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRCAE----GRAELLKH-GAGLAVVSKKILRVSHAASD 332 (407)
Q Consensus 259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~~~----~r~~i~~~-~g~i~~Lv~~l~~~s~~~~e 332 (407)
-.+-++.-+.+.|.|..+...+...+ ++--+-.++.....+-.... .-+++++. .-.|.....++-..++...+
T Consensus 243 eteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaie 322 (524)
T KOG4413|consen 243 ETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIE 322 (524)
T ss_pred HHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHH
Confidence 88888888899999998888886542 33333345544444433211 11122220 01222333434445688999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhC--hHHHHHHHHhcCCCHHHH-HHHHHHHHHHHh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVG--VVSKLCLVLQVDASVKTK-ERAREILKLNAR 388 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g--~i~~Ll~ll~~~~~~~~k-~~A~~lL~~l~~ 388 (407)
.|+.++..+.+.... ...+.+.| +.++|+.-.... +...+ +.|-..|..++.
T Consensus 323 aAiDalGilGSnteG---adlllkTgppaaehllarafdq-nahakqeaaihaLaaIag 377 (524)
T KOG4413|consen 323 AAIDALGILGSNTEG---ADLLLKTGPPAAEHLLARAFDQ-NAHAKQEAAIHALAAIAG 377 (524)
T ss_pred HHHHHHHhccCCcch---hHHHhccCChHHHHHHHHHhcc-cccchHHHHHHHHHHhhc
Confidence 999999998875443 34444554 456665544322 33333 334445555544
No 164
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=0.0039 Score=59.24 Aligned_cols=58 Identities=24% Similarity=0.454 Sum_probs=43.6
Q ss_pred ccCccccccCcCce-----ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHH
Q 040073 10 FLCPISLQLMRDPV-----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLR 70 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv-----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~ 70 (407)
-+||||++-..-|+ ++.|||-|--+||++|+.+.-...||.|.-.-... ++.+-.++|
T Consensus 5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr---~i~~e~alR 67 (463)
T KOG1645|consen 5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR---QIRPEYALR 67 (463)
T ss_pred ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH---HHHHHHHHH
Confidence 58999999888885 67899999999999999643236799997654332 565544443
No 165
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=95.81 E-value=1.2 Score=41.89 Aligned_cols=223 Identities=13% Similarity=0.093 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073 158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 235 (407)
+--|+..+.++....+...-...++. .-..++.++++ |..+.+-+..-++.-++...+..+.+-..-..|.-|+.+
T Consensus 166 rlfav~cl~~l~~~~e~R~i~waent--cs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~i 243 (432)
T COG5231 166 RLFAVSCLSNLEFDVEKRKIEWAENT--CSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAI 243 (432)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhh--HHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 66677888888877765444444442 56788888887 678888899999999987666554444444578888888
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhccc--chhHHHHH---HHHHH----HHhcCHh
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVT--ERRVCELM---LNVLD----LLCRCAE 304 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~--~~~~~~~a---l~~L~----~L~~~~~ 304 (407)
.+.. ....+.+-.+..+.|++.. ......+.-.|-+..-+++|..+. +++++... -..|. .|+..+.
T Consensus 244 Vk~~--~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~ 321 (432)
T COG5231 244 VKER--AKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN 321 (432)
T ss_pred HHHH--HHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence 8865 3567888889999999872 245666677776777777776642 33332211 11111 1221111
Q ss_pred ------------------------hHHHHHhc-cCchHHHHHHHHcCCch-hhHHHHHHHHHHhccCCchHHHHHHHHhC
Q 040073 305 ------------------------GRAELLKH-GAGLAVVSKKILRVSHA-ASDRAVRILCSVCKFSATARVLQEMLQVG 358 (407)
Q Consensus 305 ------------------------~r~~i~~~-~g~i~~Lv~~l~~~s~~-~~e~a~~~L~~l~~~~~~~~~~~~~~~~g 358 (407)
+-..+..+ ...+..|.+.+....+. .-..|+.=+..+....++ ...-+.+.|
T Consensus 322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE--~~~vl~Kyg 399 (432)
T COG5231 322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPE--INAVLSKYG 399 (432)
T ss_pred HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCch--HHHHHHHhh
Confidence 11222221 12345555554443333 344566666666665554 566677789
Q ss_pred hHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 359 VVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 359 ~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
+=+.++.++. +.++++|-.|-..++.+-
T Consensus 400 ~k~~im~L~n-h~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 400 VKEIIMNLIN-HDDDDVKFEALQALQTCI 427 (432)
T ss_pred hHHHHHHHhc-CCCchhhHHHHHHHHHHH
Confidence 9999999998 558999999999888764
No 166
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.79 E-value=0.0065 Score=54.03 Aligned_cols=48 Identities=23% Similarity=0.421 Sum_probs=40.2
Q ss_pred CcccCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccccC
Q 040073 8 AHFLCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETD 59 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~ 59 (407)
..|.|||++-.|.+-. .-+|||.|.-+++++.- ..+||+|++.+..++
T Consensus 110 a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik----as~C~~C~a~y~~~d 161 (293)
T KOG3113|consen 110 ARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK----ASVCHVCGAAYQEDD 161 (293)
T ss_pred ceeecccccceecceEEEEEEeccceeccHHHHHHhh----hccccccCCcccccC
Confidence 4599999999998875 55899999999988854 558999999998754
No 167
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=95.74 E-value=1.9 Score=41.04 Aligned_cols=197 Identities=16% Similarity=0.164 Sum_probs=110.0
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC---Cc
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW---GR 262 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~---~~ 262 (407)
+.-.+..|...+...|+.+...|..+....-....+.. ..-++..+.+.++.+ +.+-+..|++++.-|+.. ..
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg---~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG---KSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHhhhcCCCc
Confidence 44455666667889999999999987654432222222 223677777888887 556666777777766654 24
Q ss_pred hHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHHHHhc---CH-hhHHHHHhccCchHHHHHHHHc-CC---------
Q 040073 263 NRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCR---CA-EGRAELLKHGAGLAVVSKKILR-VS--------- 327 (407)
Q Consensus 263 n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~---~~-~~r~~i~~~~g~i~~Lv~~l~~-~s--------- 327 (407)
....+.+ ...|.|...+.++. +..++..++.+|..++- .+ +.-....+.-.+|-.+.. +.. +.
T Consensus 122 ~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~-~~~~~~~~~~~~~~~ 199 (309)
T PF05004_consen 122 DSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSI-LKSDGNAPVVAAEDD 199 (309)
T ss_pred cHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHh-cCcCCCcccccCCCc
Confidence 4555555 36888999988763 23444555555555433 22 112211121111111111 111 11
Q ss_pred chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
+...-.|+..-..|...-+...+. ... ...++.|..+|+++ +..+|-.|.+.|.+|-+..+
T Consensus 200 ~~l~~aAL~aW~lLlt~~~~~~~~-~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 200 AALVAAALSAWALLLTTLPDSKLE-DLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHH-HHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence 123333333333333322332222 222 34699999999965 89999999999998876543
No 168
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=95.73 E-value=1.3 Score=45.97 Aligned_cols=150 Identities=13% Similarity=0.088 Sum_probs=102.1
Q ss_pred HHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH---HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073 231 EIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR---IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA 307 (407)
Q Consensus 231 ~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~---~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~ 307 (407)
.....|+++ ++.++..|+..+..|+..-.++ +.+...|. .|.+-|... ++++.-..+++|..+...-.--.
T Consensus 803 tiL~rLnnk---sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm~k 876 (1172)
T KOG0213|consen 803 TILWRLNNK---SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGMTK 876 (1172)
T ss_pred HHHHHhcCC---ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhccccc
Confidence 334556777 8999999999998887633322 23334553 367777775 88988888888888876321111
Q ss_pred HHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 308 ELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
..--..+.+|.|.-.|.+...+.+++++..+..+|...++..-..+=.+ .---|+++|.++ ....|++|...+..++
T Consensus 877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelLkah-kK~iRRaa~nTfG~Ia 953 (1172)
T KOG0213|consen 877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELLKAH-KKEIRRAAVNTFGYIA 953 (1172)
T ss_pred cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHHHHH-HHHHHHHHHhhhhHHH
Confidence 1111135678888866666789999999999999998776322233222 233567888876 7889999999988888
Q ss_pred hh
Q 040073 388 RA 389 (407)
Q Consensus 388 ~~ 389 (407)
+.
T Consensus 954 ka 955 (1172)
T KOG0213|consen 954 KA 955 (1172)
T ss_pred Hh
Confidence 75
No 169
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=95.69 E-value=1.6 Score=39.54 Aligned_cols=207 Identities=12% Similarity=0.046 Sum_probs=130.9
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccC-----------CCCchHHHHHHH
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSD-----------AGSDECDEALSI 164 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~-----------~~~~~~~~a~~~ 164 (407)
.+.+..++-.+.++ +.+..|+.+|...-+..+.....+-. -|.+..|++-.-+.. .+. -..+|+.+
T Consensus 25 ~dk~~~~i~~l~~~-p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsn-RVcnaL~L 102 (293)
T KOG3036|consen 25 NDKAYQLILSLVSP-PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSN-RVCNALAL 102 (293)
T ss_pred ccchhhHHHHhhCC-chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccc-hHHHHHHH
Confidence 44466666666666 66777777777665544444443333 455555544332221 121 27788888
Q ss_pred HHhcCCChhHHHhHhhccchhhHHHHH-HHHhc-----CChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcc
Q 040073 165 LYHLNVSESYLKSIVINNGEEFLESLM-RVLKC-----GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 165 L~~L~~~~~~~~~~i~~~gg~~i~~Lv-~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~ 237 (407)
|.-++.+.+..+.++ .+. ||..+ ..|.. .....|..+..+|..|...++.- .......++||..++.+.
T Consensus 103 lQcvASHpdTr~~FL-~A~---iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime 178 (293)
T KOG3036|consen 103 LQCVASHPDTRRAFL-RAH---IPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIME 178 (293)
T ss_pred HHHHhcCcchHHHHH-Hcc---ChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHh
Confidence 888888876544444 443 55433 44432 34557889999999998776643 233445689999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCchHHHHH----hcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHH
Q 040073 238 DHHQFSQQASKAALKLLVELCPWGRNRIKAV----EGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAEL 309 (407)
Q Consensus 238 ~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v----~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i 309 (407)
.| +...+..|+..+-.+-.++.+-.-+. +.- .+..++.-|.+.++..+...++.+..+|+.++..|.++
T Consensus 179 ~G---SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnprar~aL 255 (293)
T KOG3036|consen 179 SG---SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRARAAL 255 (293)
T ss_pred cc---cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 98 88888888888888777666322221 111 22333333333346788899999999999999888777
Q ss_pred Hhc
Q 040073 310 LKH 312 (407)
Q Consensus 310 ~~~ 312 (407)
..+
T Consensus 256 ~~c 258 (293)
T KOG3036|consen 256 RSC 258 (293)
T ss_pred Hhh
Confidence 553
No 170
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=95.54 E-value=0.88 Score=44.36 Aligned_cols=239 Identities=19% Similarity=0.176 Sum_probs=132.1
Q ss_pred hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.++|..++..|.+.. ..|+.++-.|...+.+ +..|..+...|.+..+++.+....+....--.++.+++.++.+..
T Consensus 20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~-~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~- 97 (361)
T PF07814_consen 20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCAD-PQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL- 97 (361)
T ss_pred HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-
Confidence 567888999998333 7788888888888875 899999999999999999995544321223344455556665543
Q ss_pred HHhHhhccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc------CCCCCHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD------HHQFSQQAS 247 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~------~~~~~~~~~ 247 (407)
...++...+ ....++.+|.-. ..+.....- .....+..+.. .+.+...-.++.. .......-+
T Consensus 98 ~~~l~~~~~--~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk~~--~~~~~~~~~~~~~~~~~~~~~~~~lsp~ 167 (361)
T PF07814_consen 98 NMHLLLDRD--SLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSKVQ--QKSRSLCKELLSSGSSWKSPKPPELSPQ 167 (361)
T ss_pred chhhhhchh--HHHHHHHHhccccccccccchh------hhhhhhhhHHH--HHHHHHHHHHHhccccccccCCcccccc
Confidence 344444433 577778888711 000000000 00000000010 1111112222211 000122334
Q ss_pred HHHHHHHHHhC------------C---CCchHHHHHhcCchHHHHHHhhc----c--------c---chhHHHHHHHHHH
Q 040073 248 KAALKLLVELC------------P---WGRNRIKAVEGGGVSVLVDLLLD----V--------T---ERRVCELMLNVLD 297 (407)
Q Consensus 248 ~~A~~aL~~L~------------~---~~~n~~~~v~~G~v~~Lv~lL~~----~--------~---~~~~~~~al~~L~ 297 (407)
..|+.+|-.++ . .+.-|..+.+.|++..+++++.+ . . +-...+.++.+|.
T Consensus 168 ~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILE 247 (361)
T PF07814_consen 168 TLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILE 247 (361)
T ss_pred cHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHH
Confidence 44555555552 0 12246677788999999999862 1 0 1235678999999
Q ss_pred HHhc-CHhhHHHHHhccC-chHHHHHHHHcC-C---chhhHHHHHHHHHHhccCCc
Q 040073 298 LLCR-CAEGRAELLKHGA-GLAVVSKKILRV-S---HAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 298 ~L~~-~~~~r~~i~~~~g-~i~~Lv~~l~~~-s---~~~~e~a~~~L~~l~~~~~~ 347 (407)
+.+. +.+++.......+ ..+.+...+... . ......+++++.|++.++++
T Consensus 248 s~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~ 303 (361)
T PF07814_consen 248 SVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPS 303 (361)
T ss_pred HHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCcc
Confidence 8876 3455655555432 233333333322 1 33367889999999987654
No 171
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=95.44 E-value=0.074 Score=53.63 Aligned_cols=152 Identities=12% Similarity=0.129 Sum_probs=99.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh--hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ--LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN 263 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n 263 (407)
.+..+..+|++.++.+|++|+.+...|+..-.++. .....-| -.|.+-|... ++++.-..+.|++.+.+...-
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~---ypEvLgsil~Ai~~I~sv~~~ 679 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGED---YPEVLGSILKAICSIYSVHRF 679 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcc---cHHHHHHHHHHHHHHhhhhcc
Confidence 56677788999999999999999998875433221 1222223 2356667666 899888888888887764432
Q ss_pred H-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 264 R-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 264 ~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
+ .+-=-.|.+|.|.-.|++. ...+.++....+..+|.......-..+=.-.---|+.+|...+.+.+.+|...+..++
T Consensus 680 ~~mqpPi~~ilP~ltPILrnk-h~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 680 RSMQPPISGILPSLTPILRNK-HQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred cccCCchhhccccccHhhhhh-hHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 2 1111247899999999987 7888899999999888754321111000001124666666667777777777666665
Q ss_pred c
Q 040073 343 K 343 (407)
Q Consensus 343 ~ 343 (407)
.
T Consensus 759 ~ 759 (975)
T COG5181 759 R 759 (975)
T ss_pred h
Confidence 4
No 172
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=95.43 E-value=0.48 Score=47.45 Aligned_cols=169 Identities=14% Similarity=0.132 Sum_probs=111.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHhCCCCchHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
...+.+++.+|+...+..|..-|.+++.+......+..-.| +..|..++.+++. .+.+...-.++++..|-.+.-..-
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~g-l~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSG-LELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcch-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 45667888899999998899999999877776666666444 8899999998732 133555555555554432211000
Q ss_pred HHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 266 KAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
..+...+|-..+....-. .+..+-..|+..|..+..+.......+...--+..|+..+..++...+..|...+..+...
T Consensus 164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~ 243 (713)
T KOG2999|consen 164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRK 243 (713)
T ss_pred eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhh
Confidence 111112233333333221 1557788999999999987775555555566788888878777788888899999999887
Q ss_pred CCchHHHHHHHHh
Q 040073 345 SATARVLQEMLQV 357 (407)
Q Consensus 345 ~~~~~~~~~~~~~ 357 (407)
.++. -+.++.+.
T Consensus 244 a~~~-~R~~~~~~ 255 (713)
T KOG2999|consen 244 APDD-KRFEMAKS 255 (713)
T ss_pred CChH-HHHHHHHH
Confidence 7764 45555543
No 173
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.38 E-value=0.01 Score=55.98 Aligned_cols=50 Identities=24% Similarity=0.429 Sum_probs=36.4
Q ss_pred CCcccCccccccCcCce-----ecCCcccccHHHHHHHHhcCC-CCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPV-----TVSTGITYDRVNIERWLFTCK-NNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv-----~~~~g~t~~r~~i~~~~~~~~-~~~cP~~~~~~~~ 57 (407)
|-.-.|.||-+ +++-+ +-.|||+|.-.|+.+||+..- ++.||+|+-.+..
T Consensus 2 pi~A~C~Ic~d-~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~ 57 (465)
T KOG0827|consen 2 PIMAECHICID-GRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQE 57 (465)
T ss_pred CccceeeEecc-CCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccc
Confidence 55568999955 44333 345999999999999998642 3689999844444
No 174
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.29 E-value=0.0094 Score=56.77 Aligned_cols=49 Identities=12% Similarity=0.331 Sum_probs=40.4
Q ss_pred CcccCccccccCcCce-------e-cCCcccccHHHHHHHHhcCC-----CCCCcccccccc
Q 040073 8 AHFLCPISLQLMRDPV-------T-VSTGITYDRVNIERWLFTCK-----NNTCPVTKQVLQ 56 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv-------~-~~~g~t~~r~~i~~~~~~~~-----~~~cP~~~~~~~ 56 (407)
.+..|-||++.-.+++ + ..|-|+||-.||.+|-.... ++.||.|+.+..
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4689999999999998 3 45999999999999985433 478999987653
No 175
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=95.25 E-value=0.067 Score=46.72 Aligned_cols=79 Identities=19% Similarity=0.304 Sum_probs=65.5
Q ss_pred HHHHHhcCchHHHHHHhhccc--------chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 264 RIKAVEGGGVSVLVDLLLDVT--------ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 264 ~~~~v~~G~v~~Lv~lL~~~~--------~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
...+++.||+..|+.+|..-. +......++..|..|..+..|...++.+.+++..++..|...+...+..++
T Consensus 100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l 179 (187)
T PF06371_consen 100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL 179 (187)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence 556788899999999887631 235667899999999999999999999999999999988877889999999
Q ss_pred HHHHHHh
Q 040073 336 RILCSVC 342 (407)
Q Consensus 336 ~~L~~l~ 342 (407)
.+|..+|
T Consensus 180 eiL~~lc 186 (187)
T PF06371_consen 180 EILAALC 186 (187)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999988
No 176
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=95.25 E-value=0.19 Score=44.11 Aligned_cols=123 Identities=13% Similarity=0.078 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccc-------------hhhHHHHHHHHhc------CChhHHHHHHHHHHHhhccCC
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNG-------------EEFLESLMRVLKC------GNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~g-------------g~~i~~Lv~lL~~------~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
....++++|.||+..+.....++.... |.++..|+..+.. ...+-....+.++.|++...+
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~ 90 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE 90 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence 367788888888887766554443211 1377888888765 244556899999999999999
Q ss_pred chhhhhchhh-h--HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh---cCchHHHHHHhhc
Q 040073 218 PFQLISVKQE-F--FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE---GGGVSVLVDLLLD 282 (407)
Q Consensus 218 ~~~~i~~~~g-~--i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~---~G~v~~Lv~lL~~ 282 (407)
.+..+..... . +..|+.+.... +..-+.-++.+|+|+|-..+....+.. .+++|.|+--|..
T Consensus 91 gR~~~l~~~~~~~~l~kLl~ft~~~---s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLaG 158 (192)
T PF04063_consen 91 GRQFFLDPQRYDGPLQKLLPFTEHK---SVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLAG 158 (192)
T ss_pred HHHHHhCchhhhhHHHHHHHHhccC---cHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhccC
Confidence 8887776433 3 56666667666 777788889999999998888777776 3567776666653
No 177
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.17 E-value=0.55 Score=48.80 Aligned_cols=66 Identities=15% Similarity=0.191 Sum_probs=47.0
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
.+.+-+++.+ .+|..++-...++-. .+.+.....|.++.|-.++.+.++ .+..+|+.+|..+...+
T Consensus 125 Pl~~~l~d~~~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~~p--~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 125 PLLKCLKDDDPYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDSNP--MVVANALAALSEIHESH 191 (734)
T ss_pred HHHHhccCCChhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCCCc--hHHHHHHHHHHHHHHhC
Confidence 4444455555 677777777777633 356677889999999999995544 46889999998876554
No 178
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=95.14 E-value=0.0096 Score=56.33 Aligned_cols=47 Identities=19% Similarity=0.326 Sum_probs=41.1
Q ss_pred cCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.|-||.+-=+|=-+=+|||-.|-.|+..|...++..+||.|+..+.-
T Consensus 371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKG 417 (563)
T KOG1785|consen 371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKG 417 (563)
T ss_pred HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecc
Confidence 79999998888777799999999999999977667899999987643
No 179
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=95.13 E-value=0.056 Score=42.12 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=52.2
Q ss_pred HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccCCchhhhh
Q 040073 158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVADPFQLIS 223 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 223 (407)
+...+.+|.+|+..+..++..+.+.|| ++.++..-. ..++-.++.|..+|++|+...+.++.+.
T Consensus 3 K~~lvrlianl~~~~~~~Qd~vr~~~G--i~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I 68 (102)
T PF09759_consen 3 KRDLVRLIANLCYKNKEVQDLVRELGG--IPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFI 68 (102)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHcCC--hHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 456788999999988888999998885 888887653 4689999999999999998776665543
No 180
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=95.08 E-value=0.22 Score=42.36 Aligned_cols=147 Identities=20% Similarity=0.182 Sum_probs=95.6
Q ss_pred HHHHHHHhhc-cCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-Cc
Q 040073 141 IEFLATIITK-SDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DP 218 (407)
Q Consensus 141 i~~Lv~lL~~-~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~ 218 (407)
+..++..|.. ... ..++-.+.-++..+- +..++...+. +-+.+-.++..++.+....+..++..|-... +.
T Consensus 5 l~~lL~~L~~~~~~-~~~r~~a~v~l~k~l---~~~~~~~~~~---~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 5 LDTLLTSLDMLRQP-EEVRSHALVILSKLL---DAAREEFKEK---ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCHHHHHHHCTTTS-CCHHHHHHHHHHHHH---HHHHHHHHHH---HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHhcccCCC-HhHHHHHHHHHHHHH---HHhHHHHHHH---HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHH
Confidence 4556666665 222 235777777776652 2233333321 3444555666667778888999998886543 33
Q ss_pred hhhhhchhhhHHHHHHHcc--cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchh-HHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLR--DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR-VCELMLNV 295 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~-~~~~al~~ 295 (407)
...+....|+++.++.++. .+ +...+..++.+|..=|.+..-|..+.+.| ++-|-+++..+.+.. ++..|+-.
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~---~~~~~~~~lell~aAc~d~~~r~~I~~~~-~~~L~~~~~~~~~~~~ir~~A~v~ 153 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSK---DRKVQKAALELLSAACIDKSCRTFISKNY-VSWLKELYKNSKDDSEIRVLAAVG 153 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS----HHHHHHHHHHHHHHTTSHHHHHCCHHHC-HHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccC---CHHHHHHHHHHHHHHHccHHHHHHHHHHH-HHHHHHHHccccchHHHHHHHHHH
Confidence 4456666799999999998 55 78888888998888777666666666665 999999996543444 67776666
Q ss_pred HHH
Q 040073 296 LDL 298 (407)
Q Consensus 296 L~~ 298 (407)
|..
T Consensus 154 L~K 156 (157)
T PF11701_consen 154 LCK 156 (157)
T ss_dssp HHH
T ss_pred Hhc
Confidence 543
No 181
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=95.08 E-value=0.0062 Score=44.14 Aligned_cols=49 Identities=20% Similarity=0.477 Sum_probs=23.7
Q ss_pred CcccCccccccCc-C---ceec----CCcccccHHHHHHHHhcC--C-------CCCCcccccccc
Q 040073 8 AHFLCPISLQLMR-D---PVTV----STGITYDRVNIERWLFTC--K-------NNTCPVTKQVLQ 56 (407)
Q Consensus 8 ~~~~Cpi~~~~~~-d---Pv~~----~~g~t~~r~~i~~~~~~~--~-------~~~cP~~~~~~~ 56 (407)
++..|+||...+. + |+.. .||++|=+.|+.+||... . ...||.|+++++
T Consensus 1 ~~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 1 QELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp ---S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 3678999998754 2 5544 489999999999999751 1 135999998875
No 182
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=95.06 E-value=0.14 Score=37.22 Aligned_cols=65 Identities=20% Similarity=0.065 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073 247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK 311 (407)
Q Consensus 247 ~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~ 311 (407)
.+.|++|+.++++.+.+..-+.+.++|+.++++....+.-.++--|..+|..++.+.+|...+.+
T Consensus 4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~ 68 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDE 68 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 57899999999998888888788899999999998865678899999999999999998876654
No 183
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.05 E-value=1.9 Score=37.41 Aligned_cols=112 Identities=18% Similarity=0.208 Sum_probs=80.2
Q ss_pred ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHH
Q 040073 198 NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLV 277 (407)
Q Consensus 198 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv 277 (407)
++.+|.+++.++..|+...++ +.. ..++.+...|+++ ++.+++.|+.+|..|...+--+.. ...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~---~ve--~~~~~l~~~L~D~---~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN---LVE--PYLPNLYKCLRDE---DPLVRKTALLVLSHLILEDMIKVK---GQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH---HHH--hHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHH
Confidence 467899999999999865543 322 4688999999998 999999999999999875443322 11237777
Q ss_pred HHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc
Q 040073 278 DLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR 325 (407)
Q Consensus 278 ~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~ 325 (407)
.++.+. +++++..|...+..+.... +...+.. .++.++..+..
T Consensus 70 ~~l~D~-~~~Ir~~A~~~~~e~~~~~-~~~~i~~---~~~e~i~~l~~ 112 (178)
T PF12717_consen 70 KLLVDE-NPEIRSLARSFFSELLKKR-NPNIIYN---NFPELISSLNN 112 (178)
T ss_pred HHHcCC-CHHHHHHHHHHHHHHHHhc-cchHHHH---HHHHHHHHHhC
Confidence 788775 8899999999999998752 2223333 35555555554
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=95.04 E-value=0.098 Score=41.91 Aligned_cols=76 Identities=14% Similarity=0.112 Sum_probs=58.7
Q ss_pred hccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 180 INNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
.+++...+..|+.+|. +.++.+..-|+.-|..+....+.-+.+...-|+=..+++++.++ +++++..|+.++..|-
T Consensus 38 ~~~~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~---d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 38 EENNFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE---DPEVRYEALLAVQKLM 114 (119)
T ss_dssp SSGGGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S---SHHHHHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC---CHHHHHHHHHHHHHHH
Confidence 3333358899999994 45777778888889999888777777777778777888999998 9999999999988764
No 185
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.01 E-value=5.3 Score=41.55 Aligned_cols=268 Identities=17% Similarity=0.150 Sum_probs=147.5
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh-HHH
Q 040073 98 TQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES-YLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~-~~~ 176 (407)
.+|+.++-.=.+.+-.+.+|+-+|-.+-+.+++ .+...+....++++|.+.+-+ +.-.+...+..|+...+ ..+
T Consensus 149 ~DI~KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~~~g--v~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 149 DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQHMG--VVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCccccc--eeeehHHHHHHHHHcCCHHHh
Confidence 456655433223335556666555555555443 222346788899999876642 24455555655555433 222
Q ss_pred hHhhccchhhHHHHHHHHhc-------------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC---C
Q 040073 177 SIVINNGEEFLESLMRVLKC-------------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH---H 240 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~-------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~---~ 240 (407)
..+.. ++..|..+... +.+=.+.+.+++|.++=..++..... .-..+...+....++. .
T Consensus 224 ~~~~~----avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k 298 (938)
T KOG1077|consen 224 TCLPL----AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSK 298 (938)
T ss_pred hhHHH----HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHH-HHHHHHHHHHhccccCcccc
Confidence 22221 33333333322 23335667777777662222221111 1112334444443321 0
Q ss_pred CC-CHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHH
Q 040073 241 QF-SQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAV 318 (407)
Q Consensus 241 ~~-~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~ 318 (407)
++ ...++.+.+--..+|+.+ ++....+++ ++..|-++|.+. ..+++-.++..+..|+.+.....++-.+ ...
T Consensus 299 ~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~r-E~NiRYLaLEsm~~L~ss~~s~davK~h---~d~ 372 (938)
T KOG1077|consen 299 KVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHR-ETNIRYLALESMCKLASSEFSIDAVKKH---QDT 372 (938)
T ss_pred chHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcc-cccchhhhHHHHHHHHhccchHHHHHHH---HHH
Confidence 00 122333344344456554 445555555 488888999887 7899999999999999987766666554 455
Q ss_pred HHHHHHc-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 319 VSKKILR-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 319 Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
++..|.. .+-..++.|+..|+.+|..+. ...+ +..|+..|.. .+...|+.-.-=+.+|++-|.
T Consensus 373 Ii~sLkterDvSirrravDLLY~mcD~~N----ak~I-----V~elLqYL~t-Ad~sireeivlKvAILaEKyA 436 (938)
T KOG1077|consen 373 IINSLKTERDVSIRRRAVDLLYAMCDVSN----AKQI-----VAELLQYLET-ADYSIREEIVLKVAILAEKYA 436 (938)
T ss_pred HHHHhccccchHHHHHHHHHHHHHhchhh----HHHH-----HHHHHHHHhh-cchHHHHHHHHHHHHHHHHhc
Confidence 6665552 356789999999999996432 4443 3345555543 367777766555556665443
No 186
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.94 E-value=0.19 Score=51.27 Aligned_cols=193 Identities=19% Similarity=0.158 Sum_probs=116.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccC-----CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-----DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-----~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
.....+++++....++|..|+.++.-.+.-. ......-....++..+-+.+++. +-.++-.|+.+|..+-..
T Consensus 235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~---sl~VRV~AaK~lG~~~~v 311 (823)
T KOG2259|consen 235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDR---SLSVRVEAAKALGEFEQV 311 (823)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcC---ceeeeehHHHHhchHHHh
Confidence 3567788888888999998887777665332 11111111123455555555554 333333333333222110
Q ss_pred ---------------------------------------------------CchHHHHHhcCchHHHHHHhhcccchhHH
Q 040073 261 ---------------------------------------------------GRNRIKAVEGGGVSVLVDLLLDVTERRVC 289 (407)
Q Consensus 261 ---------------------------------------------------~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~ 289 (407)
++.-..++..|+=-+++.=|.+. --+++
T Consensus 312 See~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR 390 (823)
T KOG2259|consen 312 SEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVR 390 (823)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH-HHHHH
Confidence 01122344455555555555553 46899
Q ss_pred HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc
Q 040073 290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV 369 (407)
Q Consensus 290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~ 369 (407)
..|+..|..|+.+..+-. . -.+..||.++.+.-..++..|+.+|..++.+ -.++..-++.++..|.
T Consensus 391 ~AAV~Sl~~La~ssP~FA---~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--------l~i~eeql~~il~~L~- 456 (823)
T KOG2259|consen 391 RAAVASLCSLATSSPGFA---V--RALDFLVDMFNDEIEVVRLKAIFALTMISVH--------LAIREEQLRQILESLE- 456 (823)
T ss_pred HHHHHHHHHHHcCCCCcH---H--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--------heecHHHHHHHHHHHH-
Confidence 999999999998654332 1 1466888866555578899999999999964 1222345777888887
Q ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCCCc
Q 040073 370 DASVKTKERAREILKLNARAWRDSPCVPA 398 (407)
Q Consensus 370 ~~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 398 (407)
+.+..+|+....+|+..+- ..-.||.+
T Consensus 457 D~s~dvRe~l~elL~~~~~--~d~~~i~m 483 (823)
T KOG2259|consen 457 DRSVDVREALRELLKNARV--SDLECIDM 483 (823)
T ss_pred hcCHHHHHHHHHHHHhcCC--CcHHHHHH
Confidence 5699999999999987543 23345443
No 187
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.85 E-value=6.2 Score=41.56 Aligned_cols=255 Identities=11% Similarity=0.071 Sum_probs=132.0
Q ss_pred hcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc---
Q 040073 107 AKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN--- 182 (407)
Q Consensus 107 L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~--- 182 (407)
++.++ -.+.+|+.+...+....|+--+.++ +.-.++|...+.+ +.-.++..+..+|....+.-....+-
T Consensus 151 l~~~~~~irKKA~Lca~r~irK~P~l~e~f~-----~~~~~lL~ek~hG--VL~~~l~l~~e~c~~~~~~l~~fr~l~~~ 223 (866)
T KOG1062|consen 151 LQHRDPYIRKKAALCAVRFIRKVPDLVEHFV-----IAFRKLLCEKHHG--VLIAGLHLITELCKISPDALSYFRDLVPS 223 (866)
T ss_pred HhCCCHHHHHHHHHHHHHHHHcCchHHHHhh-----HHHHHHHhhcCCc--eeeeHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455 7888999988888777666444333 3333444433332 13334444444443321111111100
Q ss_pred -------------------chh---h----HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch--hhhHHHHHH
Q 040073 183 -------------------GEE---F----LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK--QEFFTEIVN 234 (407)
Q Consensus 183 -------------------gg~---~----i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--~g~i~~Lv~ 234 (407)
+|- + +-.+.++|..++.+..+....+|..++...+..+-++.. -..|..+..
T Consensus 224 lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 224 LVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMD 303 (866)
T ss_pred HHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence 000 0 113345555666777777777777776666555444432 012222222
Q ss_pred HcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCch---------------HHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGV---------------SVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 235 lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v---------------~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
+. . +...+..|+.+|.....+++|-.+-+..+.+ ..+++.|++. |..++.+|+..+..|
T Consensus 304 I~--~---~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~l 377 (866)
T KOG1062|consen 304 IR--S---NSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYAL 377 (866)
T ss_pred cc--C---CchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHH
Confidence 22 1 4567777777777766655533222221111 2344455553 666677777776666
Q ss_pred hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc-CCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073 300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF-SATARVLQEMLQVGVVSKLCLVLQVDASVKTKER 378 (407)
Q Consensus 300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~-~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~ 378 (407)
..... -..++ .-|+.+|...++..+...+.-+..++.. .++ -++. |..++.++...|+-.--..
T Consensus 378 vn~~N-v~~mv------~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~--k~W~------idtml~Vl~~aG~~V~~dv 442 (866)
T KOG1062|consen 378 VNESN-VRVMV------KELLEFLESSDEDFKADIASKIAELAEKFAPD--KRWH------IDTMLKVLKTAGDFVNDDV 442 (866)
T ss_pred hcccc-HHHHH------HHHHHHHHhccHHHHHHHHHHHHHHHHhcCCc--chhH------HHHHHHHHHhcccccchhh
Confidence 65332 22222 2345555555566666666666665542 333 2443 6777777777777766667
Q ss_pred HHHHHHHHHhh
Q 040073 379 AREILKLNARA 389 (407)
Q Consensus 379 A~~lL~~l~~~ 389 (407)
...++++++..
T Consensus 443 ~~nll~LIa~~ 453 (866)
T KOG1062|consen 443 VNNLLRLIANA 453 (866)
T ss_pred HHHHHHHHhcC
Confidence 77777777664
No 188
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.83 E-value=1.4 Score=46.52 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=58.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIK 266 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~ 266 (407)
+..+.+=|++.|+.+|..|.+++..+= ..+ +. .-+++++.+++.++ ++.+++.|+-|+.++=. -++..
T Consensus 94 vNti~kDl~d~N~~iR~~AlR~ls~l~-~~e----l~--~~~~~~ik~~l~d~---~ayVRk~Aalav~kly~--ld~~l 161 (757)
T COG5096 94 VNTIQKDLQDPNEEIRGFALRTLSLLR-VKE----LL--GNIIDPIKKLLTDP---HAYVRKTAALAVAKLYR--LDKDL 161 (757)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHhcC-hHH----HH--HHHHHHHHHHccCC---cHHHHHHHHHHHHHHHh--cCHhh
Confidence 455555566666666666666665551 111 11 12466666666666 66666666666666543 23334
Q ss_pred HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 267 AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 267 ~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
..++|.+..+..++.+. ++.+...|+.+|..+..
T Consensus 162 ~~~~g~~~~l~~l~~D~-dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 162 YHELGLIDILKELVADS-DPIVIANALASLAEIDP 195 (757)
T ss_pred hhcccHHHHHHHHhhCC-CchHHHHHHHHHHHhch
Confidence 45556666666666554 66666666666666654
No 189
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=94.83 E-value=0.011 Score=61.60 Aligned_cols=47 Identities=19% Similarity=0.402 Sum_probs=40.7
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+.|++|.+ ..+||++.|||.||+.|+.+.+.......||.|+..+.+
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~ 501 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKE 501 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHH
Confidence 79999999 889999999999999999998876545579999877654
No 190
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=94.82 E-value=0.71 Score=40.19 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=79.3
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCC-------CCchHHHHHHHHHhc
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDA-------GSDECDEALSILYHL 168 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~-------~~~~~~~a~~~L~~L 168 (407)
.......+..+.+.. ...+.+..|+...... ...-..|++.||+..|+.+|..-.. ......+++..|..+
T Consensus 65 ~~~p~~~i~~L~~~~-~~~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal 143 (187)
T PF06371_consen 65 KSSPEWYIKKLKSRP-STSKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL 143 (187)
T ss_dssp CHHHHHHHHHHTTT---HHHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHccC-ccHHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence 344556777777663 2225566666654443 3566778889999999999975322 113467788888888
Q ss_pred CCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073 169 NVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF 213 (407)
Q Consensus 169 ~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 213 (407)
..+..+...++...+ ++..|+..|.+.+..++..+..+|..++
T Consensus 144 ~n~~~G~~~v~~~~~--~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 144 MNTKYGLEAVLSHPD--SVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp TSSHHHHHHHHCSSS--HHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHcCcH--HHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 888877677776554 8999999999999999999999998875
No 191
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.74 E-value=2.9 Score=44.74 Aligned_cols=195 Identities=16% Similarity=0.120 Sum_probs=119.2
Q ss_pred hHHHHHHHHhc--CChhHHHHHHHHHHHhhc-cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 186 FLESLMRVLKC--GNYQSRSYAIMLLKSIFE-VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
.+....+.|.. .+.++|+.|+.++..+.. ..+.-.... ...++.|++.|+++ -.+-.|++|+.-++..+-
T Consensus 569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL--~~~L~il~eRl~nE-----iTRl~AvkAlt~Ia~S~l 641 (1233)
T KOG1824|consen 569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNEL--PRTLPILLERLGNE-----ITRLTAVKALTLIAMSPL 641 (1233)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhh--HHHHHHHHHHHhch-----hHHHHHHHHHHHHHhccc
Confidence 34455566655 488999999999987643 232211111 23577777777665 567778888887776543
Q ss_pred --hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh--hHHHHHhccCchHHHHHHHHcCCchhhHHHHHHH
Q 040073 263 --NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE--GRAELLKHGAGLAVVSKKILRVSHAASDRAVRIL 338 (407)
Q Consensus 263 --n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~--~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L 338 (407)
+...... .+++.|.+.+... .+..+...+.++..|..+.. +.....+. .+.-+-.++...+....+.|+.+|
T Consensus 642 ~i~l~~~l~-~il~~l~~flrK~-~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~--vL~el~~Lisesdlhvt~~a~~~L 717 (1233)
T KOG1824|consen 642 DIDLSPVLT-EILPELASFLRKN-QRALRLATLTALDKLVKNYSDSIPAELLEA--VLVELPPLISESDLHVTQLAVAFL 717 (1233)
T ss_pred eeehhhhHH-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccHHHHHH--HHHHhhhhhhHHHHHHHHHHHHHH
Confidence 3333333 3688888888875 66777778888777765331 12222221 122222223344577899999999
Q ss_pred HHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH--HhhccCCCCCC
Q 040073 339 CSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN--ARAWRDSPCVP 397 (407)
Q Consensus 339 ~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l--~~~~~~~~~~~ 397 (407)
..+....+. ..-.+..-.++.++.++++. -.+-.|-..+-.+ +-++...|+.+
T Consensus 718 ~tl~~~~ps---~l~~~~~~iL~~ii~ll~Sp---llqg~al~~~l~~f~alV~t~~~~l~ 772 (1233)
T KOG1824|consen 718 TTLAIIQPS---SLLKISNPILDEIIRLLRSP---LLQGGALSALLLFFQALVITKEPDLD 772 (1233)
T ss_pred HHHHhcccH---HHHHHhhhhHHHHHHHhhCc---cccchHHHHHHHHHHHHHhcCCCCcc
Confidence 999976554 34455567899999999964 3343443333333 22456777876
No 192
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=94.70 E-value=3.5 Score=39.27 Aligned_cols=193 Identities=16% Similarity=0.102 Sum_probs=105.6
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC---hh
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVS---ES 173 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~---~~ 173 (407)
+...+..+.... ..|..++..|..+...... -+.+.+ .-.+..+.+.++.+.. ..+..|+.++..++.. .+
T Consensus 45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~--~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS--EEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH--HHHHHHHHHHHHHhhhcCCCc
Confidence 445555555333 8889999999988765322 223322 2346677777777655 2366666666666543 12
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCC--hhHHHHHHHHHHHhhccCCc-hhhhhchhhhHHH--HHHHcccCCC-------
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGN--YQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTE--IVNVLRDHHQ------- 241 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~--Lv~lL~~~~~------- 241 (407)
+...++.. ..|.|...+..++ ...|..++.+|.-++..... ...+...-..+.. ....++.++.
T Consensus 122 ~~~ei~~~----~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~ 197 (309)
T PF05004_consen 122 DSEEIFEE----LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAE 197 (309)
T ss_pred cHHHHHHH----HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCC
Confidence 33455542 6888888887653 45666777677766543211 1111100012331 2222332210
Q ss_pred CCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 242 FSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 242 ~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
.++.+..+|+.+-.-|... +.....-.-...+|.|..+|.+. +.+++-.|-.+|..|-
T Consensus 198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 198 DDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSD-DVDVRIAAGEAIALLY 256 (309)
T ss_pred CccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 1345677776555444442 33222222234699999999986 7888776666666553
No 193
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.68 E-value=1.7 Score=45.46 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=133.8
Q ss_pred hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHH-hcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHH--HHH
Q 040073 129 ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILY-HLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSR--SYA 205 (407)
Q Consensus 129 ~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~-~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~--~~a 205 (407)
..-|...++.|+...|+.+...... .....+..+|. .+....+.. . .+++.+...+.+.. ... -.+
T Consensus 494 K~~~~~~Ik~~~~~aLlrl~~~q~e--~akl~~~~aL~~~i~f~~~~~------~--~v~~~~~s~~~~d~-~~~en~E~ 562 (748)
T KOG4151|consen 494 KYERAKKIKPGGYEALLRLGQQQFE--EAKLKWYHALAGKIDFPGERS------Y--EVVKPLDSALHNDE-KGLENFEA 562 (748)
T ss_pred HHhcCccccccHHHHHHHHHHHhch--HHHHHHHHHHhhhcCCCCCch------h--hhhhhhcchhhhhH-HHHHHHHH
Confidence 4456667788999999998876554 23555555554 222211111 1 14555555554322 222 356
Q ss_pred HHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHh-cCchHHHHHHhhc
Q 040073 206 IMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVE-GGGVSVLVDLLLD 282 (407)
Q Consensus 206 ~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~-~G~v~~Lv~lL~~ 282 (407)
..++.||++.+++. ..+... -+++.+-.++... ++-.+++++..+.||..++. ....+++ ...++.....+..
T Consensus 563 L~altnLas~s~s~r~~i~ke-~~~~~ie~~~~ee---~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~ 638 (748)
T KOG4151|consen 563 LEALTNLASISESDRQKILKE-KALGKIEELMTEE---NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEV 638 (748)
T ss_pred HHHhhcccCcchhhHHHHHHH-hcchhhHHHhhcc---cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHh
Confidence 67788888776654 344443 3355444556566 89999999999999998766 4455566 3456666655555
Q ss_pred ccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHH
Q 040073 283 VTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVS 361 (407)
Q Consensus 283 ~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~ 361 (407)
. +....-.+++++..++.-.++ ...+.+...+...++..+.+.+...+...+.+..++.. ...++...++....++
T Consensus 639 ~-~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~--~~~ei~~~~~~~~~~~ 715 (748)
T KOG4151|consen 639 A-DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE--ALFEIAEKIFETEVME 715 (748)
T ss_pred h-hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH--HHHHHHHHhccchHHH
Confidence 3 556666777777755553333 22243334466788887888888889888888888654 3344666666666665
Q ss_pred HHHHH
Q 040073 362 KLCLV 366 (407)
Q Consensus 362 ~Ll~l 366 (407)
-+..+
T Consensus 716 ~l~~~ 720 (748)
T KOG4151|consen 716 LLSGL 720 (748)
T ss_pred HHHHH
Confidence 55444
No 194
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.68 E-value=6.5 Score=41.00 Aligned_cols=249 Identities=12% Similarity=0.147 Sum_probs=153.7
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChh-HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSER-NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV 179 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~-~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 179 (407)
.++-.|.++. -.|.+|+-.|+.+...-|+ .|. .+|.|+.-|++++.+ ++..|+.+++.|+..++ +..+
T Consensus 148 Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~--V~SAAV~VICELArKnP--knyL 217 (877)
T KOG1059|consen 148 DVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPS--VVSAAVSVICELARKNP--QNYL 217 (877)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCch--HHHHHHHHHHHHHhhCC--cccc
Confidence 3444445554 7788888888887655444 233 368889999888873 58999999999998765 4454
Q ss_pred hccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH--H
Q 040073 180 INNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV--E 256 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~--~ 256 (407)
. .-|.+.++|.. .|-=+......+..+|+-..+ ..+. ..+++|.+++.+- .-....-....++. +
T Consensus 218 ~-----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEP---RLgK--KLieplt~li~sT--~AmSLlYECvNTVVa~s 285 (877)
T KOG1059|consen 218 Q-----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEP---RLGK--KLIEPITELMEST--VAMSLLYECVNTVVAVS 285 (877)
T ss_pred c-----ccHHHHHHHhccCCCeehHHHHHHHhhccccCc---hhhh--hhhhHHHHHHHhh--HHHHHHHHHHHHheeeh
Confidence 3 34667777754 344455667777777765443 2443 4789999999764 11122222222222 4
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHH
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVR 336 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~ 336 (407)
++...++..+.+.. .+..|-.++.+. |.+++-..+-++..+.... -..+.++ -..+++.|.+.++..+-.|+.
T Consensus 286 ~s~g~~d~~asiqL-CvqKLr~fieds-DqNLKYlgLlam~KI~ktH--p~~Vqa~---kdlIlrcL~DkD~SIRlrALd 358 (877)
T KOG1059|consen 286 MSSGMSDHSASIQL-CVQKLRIFIEDS-DQNLKYLGLLAMSKILKTH--PKAVQAH---KDLILRCLDDKDESIRLRALD 358 (877)
T ss_pred hccCCCCcHHHHHH-HHHHHhhhhhcC-CccHHHHHHHHHHHHhhhC--HHHHHHh---HHHHHHHhccCCchhHHHHHH
Confidence 44443344443433 366666777775 8899999999999888632 2233343 246677777778899999999
Q ss_pred HHHHHhccCCchHHHHHHHHhChHHHHHHHH-hcCCCHHHHHHHHHHHHHHHh
Q 040073 337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVL-QVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll-~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.|+-+... +-..++ +..|+.-+ .++++.-.-+....++.+++.
T Consensus 359 Ll~gmVsk----kNl~eI-----Vk~LM~~~~~ae~t~yrdell~~II~iCS~ 402 (877)
T KOG1059|consen 359 LLYGMVSK----KNLMEI-----VKTLMKHVEKAEGTNYRDELLTRIISICSQ 402 (877)
T ss_pred HHHHHhhh----hhHHHH-----HHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence 99998853 234453 33454433 334433334445556665544
No 195
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=94.64 E-value=1.3 Score=45.09 Aligned_cols=256 Identities=14% Similarity=0.164 Sum_probs=134.8
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh---ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQ---SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~---~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
.-|...+..|++.. ..+..|+.....+++- +.+ -+.+...|.| |-.-|...++ ++.--.+.+++.+....
T Consensus 604 ~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg~i--LyE~lge~yp--EvLgsil~Ai~~I~sv~- 677 (975)
T COG5181 604 MIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGE-TKELAKLGNI--LYENLGEDYP--EVLGSILKAICSIYSVH- 677 (975)
T ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHhHH--HHHhcCcccH--HHHHHHHHHHHHHhhhh-
Confidence 34556677777665 8888888777766542 111 2334444532 3344443333 23444444444332211
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
..+.+---..| .+|.|.-+|++....+..+.+..+.-++..........+=-.+--.|+++|++. +.+++++|..+
T Consensus 678 ~~~~mqpPi~~-ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~---nKeiRR~A~~t 753 (975)
T COG5181 678 RFRSMQPPISG-ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW---NKEIRRNATET 753 (975)
T ss_pred cccccCCchhh-ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh---hHHHHHhhhhh
Confidence 11111111122 899999999999899999999999999876554322111112344589999988 99999999998
Q ss_pred HHHhCCCCchHHHHHhcCchHHHHHHhhcccchh---HHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---
Q 040073 254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERR---VCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS--- 327 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~---~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s--- 327 (407)
+.-++.. +.-..++..|+.-|+.. ++. +...|.++....|. + -..+|.| |.++.
T Consensus 754 fG~Is~a------iGPqdvL~~LlnnLkvq-eRq~RvctsvaI~iVae~cg-p---------fsVlP~l---m~dY~TPe 813 (975)
T COG5181 754 FGCISRA------IGPQDVLDILLNNLKVQ-ERQQRVCTSVAISIVAEYCG-P---------FSVLPTL---MSDYETPE 813 (975)
T ss_pred hhhHHhh------cCHHHHHHHHHhcchHH-HHHhhhhhhhhhhhhHhhcC-c---------hhhHHHH---HhcccCch
Confidence 8877541 11122333344333332 111 11112222111111 0 0123443 33432
Q ss_pred chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHH-HHhcCCCHHHHHHHHHHHHHHHh
Q 040073 328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCL-VLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~-ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
...|...+++++.+...-++. .... .-.+.+|++ .|. +-++..|+.|..+++-|.-
T Consensus 814 ~nVQnGvLkam~fmFeyig~~-s~dY---vy~itPlleDAlt-DrD~vhRqta~nvI~Hl~L 870 (975)
T COG5181 814 ANVQNGVLKAMCFMFEYIGQA-SLDY---VYSITPLLEDALT-DRDPVHRQTAMNVIRHLVL 870 (975)
T ss_pred hHHHHhHHHHHHHHHHHHHHH-HHHH---HHHhhHHHHhhhc-ccchHHHHHHHHHHHHHhc
Confidence 345666666666655432221 1222 234555544 444 5688888888888876643
No 196
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=94.61 E-value=0.28 Score=43.14 Aligned_cols=122 Identities=19% Similarity=0.151 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHh----------------cCchHHHHHHhhccc-----chhHHHHHHHHHHHHhcC
Q 040073 244 QQASKAALKLLVELCPWGRNRIKAVE----------------GGGVSVLVDLLLDVT-----ERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 244 ~~~~~~A~~aL~~L~~~~~n~~~~v~----------------~G~v~~Lv~lL~~~~-----~~~~~~~al~~L~~L~~~ 302 (407)
......++..|.||+..+.....+++ ..++..|++.+..+. ...-....+.+|.|++..
T Consensus 9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~ 88 (192)
T PF04063_consen 9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL 88 (192)
T ss_pred cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence 34555666777777777666654443 236778888887621 245567899999999999
Q ss_pred HhhHHHHHhccCch---HHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH---hChHHHHHHHHh
Q 040073 303 AEGRAELLKHGAGL---AVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ---VGVVSKLCLVLQ 368 (407)
Q Consensus 303 ~~~r~~i~~~~g~i---~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~---~g~i~~Ll~ll~ 368 (407)
++||.-+.....+. ..|+-++...|..-+..+++++.|+|-....+ ..... .+.++.|+.-|-
T Consensus 89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H---~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH---EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH---HHhcCchhhhhHHHHHhhcc
Confidence 99999998765444 34444444446777889999999999754443 33333 578888877776
No 197
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.58 E-value=0.028 Score=52.47 Aligned_cols=51 Identities=20% Similarity=0.229 Sum_probs=42.3
Q ss_pred CCCC--CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 4 IEVP--AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 4 ~~~p--~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.++| ++=.||||-----..|..||||.-|..||.+++-+ .+.|-.|+....
T Consensus 415 ~~lp~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN--~k~CFfCktTv~ 467 (489)
T KOG4692|consen 415 KDLPDSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN--CKRCFFCKTTVI 467 (489)
T ss_pred CCCCCcccccCcceecccchhhccCCCCchHHHHHHHHHhc--CCeeeEecceee
Confidence 3455 56799999988888899999999999999999975 677888876554
No 198
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=94.57 E-value=0.35 Score=44.33 Aligned_cols=98 Identities=16% Similarity=0.170 Sum_probs=76.9
Q ss_pred HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHh
Q 040073 202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLL 280 (407)
Q Consensus 202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL 280 (407)
...|..+|.-++-.++..+.++.....+..|+++|... ..+.++.+++.+|..+.. ++.|...+.+.|++..++.++
T Consensus 108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~--~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPS--NPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccC--CCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 45677888888777776666666678899999999543 268888889998887666 677999999999999999999
Q ss_pred hccc-chhHHHHHHHHHHHHhc
Q 040073 281 LDVT-ERRVCELMLNVLDLLCR 301 (407)
Q Consensus 281 ~~~~-~~~~~~~al~~L~~L~~ 301 (407)
++.. +.+++-+++..|.-...
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHc
Confidence 8763 56777777777775544
No 199
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.51 E-value=2.4 Score=45.11 Aligned_cols=216 Identities=11% Similarity=0.117 Sum_probs=142.3
Q ss_pred HHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc
Q 040073 160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD 238 (407)
Q Consensus 160 ~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~ 238 (407)
.|.+++...+.....+..++.. ++...+..+.- ...-++..|++++..-+ ......-...+++..|+++...
T Consensus 469 Ra~~~i~~fs~~~~~~~~~~~~----fl~~~v~~l~~~~~~~~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~ 541 (1005)
T KOG2274|consen 469 RAFLTISKFSSSTVINPQLLQH----FLNATVNALTMDVPPPVKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASK 541 (1005)
T ss_pred HHHHHHHHHHhhhccchhHHHH----HHHHHHHhhccCCCCchhHHHHHHHHhcc---CceeccccchHHHHHHHHHccc
Confidence 5555555444333233333321 34444555543 45566677777666654 2222233346788889999877
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH
Q 040073 239 HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA 317 (407)
Q Consensus 239 ~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~ 317 (407)
. +.++...-..+|...+..+.-.....++-..|-.+.+.... .++-+...+--++..|+...++..-... ..||
T Consensus 542 ~---s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e--~~iP 616 (1005)
T KOG2274|consen 542 S---SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE--RLIP 616 (1005)
T ss_pred c---cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH--HHHH
Confidence 7 88888888999999999888777778888888888777553 2677777888888888764333322222 4689
Q ss_pred HHHHHHHcCC----chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 318 VVSKKILRVS----HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 318 ~Lv~~l~~~s----~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.+|..|.... .....-|+.+|..+-++.++. .-..+ -.-++|++....-..++..+-++|.+.|+.+-..
T Consensus 617 slisil~~~~~~~~~~l~~~aidvLttvvr~tp~p-L~~~l-~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 617 SLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSP-LPNLL-ICYAFPAVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCC-ccHHH-HHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 9999776543 445677788888788776654 33333 3357888877753345889999999999887664
No 200
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=94.51 E-value=4 Score=43.78 Aligned_cols=231 Identities=11% Similarity=0.106 Sum_probs=128.1
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhc---------CcHHHHHHHhhccCCC--CchHHHHHHHHHhc
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAA---------GAIEFLATIITKSDAG--SDECDEALSILYHL 168 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~---------G~i~~Lv~lL~~~~~~--~~~~~~a~~~L~~L 168 (407)
-+++.+.++. +.+..|..+|.+++..+ +.+-.++.+. =.+-.|-.++.....+ ....+.....|..=
T Consensus 861 ~iieaf~sp~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~ 940 (1233)
T KOG1824|consen 861 TIIEAFNSPSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKH 940 (1233)
T ss_pred HHHHHcCCChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHh
Confidence 3455666776 66667777888887743 2222222110 0122233333322221 11123333333333
Q ss_pred CCCh-hHHHhHhhccch--------hhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073 169 NVSE-SYLKSIVINNGE--------EFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH 239 (407)
Q Consensus 169 ~~~~-~~~~~~i~~~gg--------~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~ 239 (407)
|.+. +..+.++.+-=| ..+|.|-..+.++....|.-++.++................ ..|.-...+++++
T Consensus 941 cE~~eegtR~vvAECLGkL~l~epesLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dp 1019 (1233)
T KOG1824|consen 941 CECAEEGTRNVVAECLGKLVLIEPESLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDP 1019 (1233)
T ss_pred cccchhhhHHHHHHHhhhHHhCChHHHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCC
Confidence 3322 333444443221 35677777888888888988888888655444444333333 3577888899998
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc---------------------cchhHHHHHHHHHHH
Q 040073 240 HQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV---------------------TERRVCELMLNVLDL 298 (407)
Q Consensus 240 ~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~---------------------~~~~~~~~al~~L~~ 298 (407)
+.++++.|+.++-.-+.+ |..+++ +.+|-|+..|-+. .+-+++..|..++..
T Consensus 1020 ---Dl~VrrvaLvv~nSaahN---KpslIr-DllpeLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmyt 1092 (1233)
T KOG1824|consen 1020 ---DLEVRRVALVVLNSAAHN---KPSLIR-DLLPELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYT 1092 (1233)
T ss_pred ---chhHHHHHHHHHHHHHcc---CHhHHH-HHHHHHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHH
Confidence 999999999999877654 444444 4566666655431 134677788888888
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcC---CchhhHHHHHHHHHHhccCCc
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRV---SHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~---s~~~~e~a~~~L~~l~~~~~~ 347 (407)
|-.....+..+.. ++..+..| .-..+-....+|..++..+++
T Consensus 1093 LLdscld~~dit~-------Fl~~~~~GL~DhydiKmlt~l~l~rLa~lcPs 1137 (1233)
T KOG1824|consen 1093 LLDSCLDRLDITE-------FLNHVEDGLEDHYDIKMLTFLMLARLADLCPS 1137 (1233)
T ss_pred HHHhhhhhccHHH-------HHHHHHhhcchhhHHHHHHHHHHHHHHhhCcH
Confidence 8776655544433 12212221 123344455566666655565
No 201
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.43 E-value=0.011 Score=39.50 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=37.6
Q ss_pred ccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
--|.||.+--.|-|+-.|||. .|..|=.+-|+. ++..||+|+.++.+
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~-~~g~CPiCRapi~d 55 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA-LHGCCPICRAPIKD 55 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc-cCCcCcchhhHHHH
Confidence 369999998889989999997 577776666654 48899999987643
No 202
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.25 E-value=4.1 Score=44.63 Aligned_cols=216 Identities=13% Similarity=0.156 Sum_probs=116.6
Q ss_pred chHHHHHHHHHhcCCChhHHHhHhhcc-chhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073 156 DECDEALSILYHLNVSESYLKSIVINN-GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN 234 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~-gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 234 (407)
.++..+..+|..++...+ ...+.... . .....|..-+++.+...+.....+|..|-.....-..... ...|+.+|=
T Consensus 669 ~vQkK~yrlL~~l~~~~s-~~~~~~q~i~-~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~EvIL 745 (1176)
T KOG1248|consen 669 KVQKKAYRLLEELSSSPS-GEGLVEQRID-DIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI-PKLIPEVIL 745 (1176)
T ss_pred HHHHHHHHHHHHHhcCCc-hhhHHHHHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHH
Confidence 358888888888877632 22222221 1 1333444445555566666777777776544331111111 123555554
Q ss_pred HcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC------chHHHHHHhhccc-chhHHHHHH--HHHHHHhcCHhh
Q 040073 235 VLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG------GVSVLVDLLLDVT-ERRVCELML--NVLDLLCRCAEG 305 (407)
Q Consensus 235 lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G------~v~~Lv~lL~~~~-~~~~~~~al--~~L~~L~~~~~~ 305 (407)
.++.- +..+++.|..+|..++. .....+.| .|...+..+..+- +......+. -++..+.. .
T Consensus 746 ~~Ke~---n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~---e 815 (1176)
T KOG1248|consen 746 SLKEV---NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ---E 815 (1176)
T ss_pred hcccc---cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH---H
Confidence 55555 89999999999999982 11112222 4445555554431 112222222 22222221 1
Q ss_pred HHHHHhccCchHHHH----HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073 306 RAELLKHGAGLAVVS----KKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE 381 (407)
Q Consensus 306 r~~i~~~~g~i~~Lv----~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~ 381 (407)
...+++. ..++.++ ..|...++...+.|++.+..++...++. .-.-...-.++.++.+++ +.+-..|.+...
T Consensus 816 ~~~~ld~-~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~--~l~~~~~~LL~sll~ls~-d~k~~~r~Kvr~ 891 (1176)
T KOG1248|consen 816 FKNILDD-ETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEE--CLSPHLEELLPSLLALSH-DHKIKVRKKVRL 891 (1176)
T ss_pred HhccccH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHH--HHhhhHHHHHHHHHHHHH-hhhHHHHHHHHH
Confidence 1122221 2223333 3334456888999999999998866542 211112236788888777 457888888888
Q ss_pred HHHHHHh
Q 040073 382 ILKLNAR 388 (407)
Q Consensus 382 lL~~l~~ 388 (407)
+|+.|-+
T Consensus 892 LlekLir 898 (1176)
T KOG1248|consen 892 LLEKLIR 898 (1176)
T ss_pred HHHHHHH
Confidence 8876655
No 203
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=94.18 E-value=9.7 Score=40.97 Aligned_cols=225 Identities=19% Similarity=0.140 Sum_probs=120.8
Q ss_pred hhhHHHHHHHhcCC-----C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC------CCchHHHHHHH
Q 040073 97 KTQIVKILNDAKKS-----P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA------GSDECDEALSI 164 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-----~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~------~~~~~~~a~~~ 164 (407)
.+++..++..|.+. . +.-...++-|+..++- ..||+.+.+.|+++.|++.|..... ...+-+.-+.+
T Consensus 116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 45666677666431 1 2223344455555555 8999999999999999998863211 12234555544
Q ss_pred HHhcCCChhH--HH---hHhhcc-----chhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCchhhhhchhhhHH
Q 040073 165 LYHLNVSESY--LK---SIVINN-----GEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFT 230 (407)
Q Consensus 165 L~~L~~~~~~--~~---~~i~~~-----gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~ 230 (407)
+-.+...... .. ...... +..-+..|.+.+.+ .+..+.+..+++|-.|+..++........ .+.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence 4433221110 00 000000 10136666666665 36778889999999998766554333331 233
Q ss_pred HHHHHcccCCCCCHHHHHHHHHHHHHhCCC----C---chHHHHHhcCchHHHHHHhhccc-------ch--------hH
Q 040073 231 EIVNVLRDHHQFSQQASKAALKLLVELCPW----G---RNRIKAVEGGGVSVLVDLLLDVT-------ER--------RV 288 (407)
Q Consensus 231 ~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~----~---~n~~~~v~~G~v~~Lv~lL~~~~-------~~--------~~ 288 (407)
+-+++=+-+....++- +..+..+..++.. . .-|..+++.|++...++.|...- ++ ..
T Consensus 273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps 351 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS 351 (802)
T ss_pred HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence 3333211110001111 2235555555542 1 24778899999998888886531 12 23
Q ss_pred HHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC
Q 040073 289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS 327 (407)
Q Consensus 289 ~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s 327 (407)
...++..|.-|+.+...-+.++. ..+++.+-. |-..+
T Consensus 352 Lp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~lH~-LEqvs 388 (802)
T PF13764_consen 352 LPYILRLLRGLARGHEPTQLLIA-EQLLPLLHR-LEQVS 388 (802)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHH-hhHHHHHHH-hhcCC
Confidence 35678888888886554444444 345654443 54443
No 204
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.17 E-value=0.044 Score=36.13 Aligned_cols=43 Identities=19% Similarity=0.325 Sum_probs=21.2
Q ss_pred CccccccC--cCceec--CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 12 CPISLQLM--RDPVTV--STGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 12 Cpi~~~~~--~dPv~~--~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
||+|.+.| +|--.. +||+.+||.|-.+-... ++..||-|++++
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~-~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN-EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS-S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc-cCCCCCCCCCCC
Confidence 79999888 222233 48999999998887653 478999999875
No 205
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.026 Score=56.74 Aligned_cols=38 Identities=29% Similarity=0.526 Sum_probs=31.5
Q ss_pred CcccCccccccC----cCceecCCcccccHHHHHHHHhcCCCCCCc
Q 040073 8 AHFLCPISLQLM----RDPVTVSTGITYDRVNIERWLFTCKNNTCP 49 (407)
Q Consensus 8 ~~~~Cpi~~~~~----~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP 49 (407)
+.++|+||...| ..||.+-||||.|+.|.+.-.. .+||
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn----~scp 51 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN----ASCP 51 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh----ccCC
Confidence 347999997666 5799999999999999999764 4677
No 206
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=93.88 E-value=0.031 Score=51.39 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=35.3
Q ss_pred ccCccccccCcC---ceecCCcccccHHHHHHHHhcC-CCCCCcccc
Q 040073 10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTC-KNNTCPVTK 52 (407)
Q Consensus 10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~ 52 (407)
|.||+..+.-.| ||.+.|||..-+.++.+.-+++ ..+.||.|-
T Consensus 337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP 383 (396)
T COG5109 337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP 383 (396)
T ss_pred eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence 899998877765 9999999999999999866542 147899993
No 207
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=93.83 E-value=0.027 Score=38.02 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=33.7
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+..|=.|...=...++++|||..|+.| |...+-.-||.|+.++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~----f~~~rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNC----FPGERYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccc----cChhhccCCCCCCCcccC
Confidence 345556676667788999999999998 443234669999998865
No 208
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.83 E-value=0.37 Score=37.31 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=49.6
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
.++++++..+.+. +..++..|+.+|+|++..-. ..+.. ...++.|.+++.+. ++.+ ..++..|.+|-
T Consensus 27 ~Il~pVL~~~~D~---d~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~-d~~V-r~~a~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQ---DSRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADP-DENV-RSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCC---cHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCC-chhH-HHHHHHHHHHh
Confidence 5899999999998 99999999999999986332 33332 35778888888775 5665 45557776653
No 209
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=93.81 E-value=6.3 Score=38.68 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=94.1
Q ss_pred hHHHHHHHHhcC---ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCC
Q 040073 186 FLESLMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 186 ~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
....|..++++. ...+-..|+.++..+...++....+..+.|.++.+++.+. .+-..+.++...--.+|..||.+.
T Consensus 107 L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~ 186 (379)
T PF06025_consen 107 LLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNN 186 (379)
T ss_pred HHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH
Confidence 566667777763 4556678889999988777777777888899999998887 432246788888889999999999
Q ss_pred chHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhcC-HhhHHHHHh
Q 040073 262 RNRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCRC-AEGRAELLK 311 (407)
Q Consensus 262 ~n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~~-~~~r~~i~~ 311 (407)
++.+.+.+.++++.+++++.+.. ..+.....-..+..|.++ +.-|..+++
T Consensus 187 ~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 187 RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999999987742 123444455566777774 444555544
No 210
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=93.81 E-value=0.98 Score=40.21 Aligned_cols=150 Identities=17% Similarity=0.211 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCChh-HHHhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVSES-YLKSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~~~-~~~~~i~~~gg~~i 187 (407)
...+.|+..|.-++.+ |+.|..+.++..--.|-.+|...+.. +-.+-.++++++.|..++. ...+++.... ++
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTe--iv 191 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTE--IV 191 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhh--HH
Confidence 3446788888888877 89999999988655555566543331 2347778888988877653 3345555444 89
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHH-HcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVN-VLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~-lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
|...+++..|+.-.+.-|+.++..+..++..-..++..-. .+.-++. +...+ +....+.+.++-..||.
T Consensus 192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~---~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG---STRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---chhHHHHHHHHheeecC
Confidence 9999999999999999999999988877776555543211 2233332 22334 77888999999888887
Q ss_pred CCchHHHH
Q 040073 260 WGRNRIKA 267 (407)
Q Consensus 260 ~~~n~~~~ 267 (407)
.+..|..+
T Consensus 269 ~p~aR~lL 276 (315)
T COG5209 269 KPHARALL 276 (315)
T ss_pred CHhHHHHH
Confidence 66665544
No 211
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=93.77 E-value=0.17 Score=40.52 Aligned_cols=72 Identities=14% Similarity=0.101 Sum_probs=56.7
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.++..|+++|... .++.....|+.-|..++.. +..|..+-+.|+=..++++|.+. +++++..|+.++..+..
T Consensus 43 ~llk~L~~lL~~s--~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 43 ELLKKLIKLLDKS--DDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHE-DPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHHH-SH--HHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-S-SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccC--CCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 4788999999543 2778888899999999884 55666666689999999999986 89999999999887643
No 212
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.70 E-value=0.048 Score=49.83 Aligned_cols=46 Identities=17% Similarity=0.294 Sum_probs=37.9
Q ss_pred cCcccc-ccCcCce----ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 11 LCPISL-QLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 11 ~Cpi~~-~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.||+|. +.+..|= +-+|||+.|-+|...-|.. |...||.|+..+..
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~-g~~~CpeC~~iLRk 52 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL-GPAQCPECMVILRK 52 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc-CCCCCCcccchhhh
Confidence 599998 6677774 3389999999999999987 48899999987755
No 213
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=93.61 E-value=0.015 Score=59.62 Aligned_cols=46 Identities=24% Similarity=0.410 Sum_probs=38.3
Q ss_pred ccCccccccCcCceec---CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTV---STGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.||+|..-+.|-.+. .|+|-||.+||..|-.- ..+||+|+..+..
T Consensus 124 ~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~--aqTCPiDR~EF~~ 172 (1134)
T KOG0825|consen 124 NQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC--AQTCPVDRGEFGE 172 (1134)
T ss_pred hhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh--cccCchhhhhhhe
Confidence 4789999888888755 59999999999999864 6799999988765
No 214
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=93.52 E-value=11 Score=41.02 Aligned_cols=225 Identities=16% Similarity=0.134 Sum_probs=130.9
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
+..|++.++..+ ..+-.|++.+..++...|. .++ ..+|...++++...++.. ..-.|.-+|+.|+.-.--.-..
T Consensus 343 ie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~---~La-d~vi~svid~~~p~e~~~-aWHgacLaLAELA~rGlLlps~ 417 (1133)
T KOG1943|consen 343 IEHLLSALSDTDTVVRWSAAKGLGRVTSRLPP---ELA-DQVIGSVIDLFNPAEDDS-AWHGACLALAELALRGLLLPSL 417 (1133)
T ss_pred HHHHHHhccCCcchhhHHHHHHHHHHHccCcH---HHH-HHHHHHHHHhcCcCCchh-HHHHHHHHHHHHHhcCCcchHH
Confidence 334455555555 7788899999999888662 222 224666667665444322 3667778888877532111111
Q ss_pred hhccchhhHHHHHHHHhc--------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHH
Q 040073 179 VINNGEEFLESLMRVLKC--------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKA 249 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~ 249 (407)
+. +++|.++.-|.- ....+|..|+-+++.++...+....--..+...+.|+ ..+-+. .-.++++
T Consensus 418 l~----dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr---evncRRA 490 (1133)
T KOG1943|consen 418 LE----DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR---EVNCRRA 490 (1133)
T ss_pred HH----HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc---hhhHhHH
Confidence 11 156666666532 2456889999999999876554321111122333333 334455 6789999
Q ss_pred HHHHHHHhCCCCch--------------------------HHHHHh-cCchHHHHHHhhccc----chhHHHHHHHHHHH
Q 040073 250 ALKLLVELCPWGRN--------------------------RIKAVE-GGGVSVLVDLLLDVT----ERRVCELMLNVLDL 298 (407)
Q Consensus 250 A~~aL~~L~~~~~n--------------------------~~~~v~-~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~ 298 (407)
|..|+.....-..| ...+.+ .|...++++.|.... +..+++.++.+|..
T Consensus 491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~ 570 (1133)
T KOG1943|consen 491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHK 570 (1133)
T ss_pred HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHH
Confidence 99988866442221 222333 466667776665531 67899999999999
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS 340 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 340 (407)
|+.... +... ....|.++...+..+...+..+..+...
T Consensus 571 Ls~~~p---k~~a-~~~L~~lld~~ls~~~~~r~g~~la~~e 608 (1133)
T KOG1943|consen 571 LSLTEP---KYLA-DYVLPPLLDSTLSKDASMRHGVFLAAGE 608 (1133)
T ss_pred HHHhhH---Hhhc-ccchhhhhhhhcCCChHHhhhhHHHHHH
Confidence 887432 2233 3456777776666555444444433333
No 215
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=93.52 E-value=3.8 Score=40.75 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=86.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCc-------------hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADP-------------FQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
.+..|+.+|.+ .+....|+..+.-|..+ ++. +++++. -.+|.|++-.++. +.+.+.+-+
T Consensus 272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~---~~~~k~~yL 344 (415)
T PF12460_consen 272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA---DDEIKSNYL 344 (415)
T ss_pred HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc---ChhhHHHHH
Confidence 56677777765 67788999999988766 221 222222 3678888888776 667888889
Q ss_pred HHHHHhCCCCchHHHHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073 252 KLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL 324 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~ 324 (407)
.||.++..+-+...-+-+ ...+|.|++-|.-. +.+++..++.+|..+.... ...+.+| +..+|..|+
T Consensus 345 ~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~--~~~i~~h---l~sLI~~LL 412 (415)
T PF12460_consen 345 TALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA--PELISEH---LSSLIPRLL 412 (415)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC--HHHHHHH---HHHHHHHHH
Confidence 999999886554433334 34788888888765 7789999999999888754 3333332 455555544
No 216
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=93.38 E-value=5.3 Score=36.65 Aligned_cols=141 Identities=15% Similarity=0.096 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHhCCCCchHHHH-H-hcCchHHHHHHhhcc-----c------chhHHHHHHHHHHHHhcCHhhHHHH
Q 040073 243 SQQASKAALKLLVELCPWGRNRIKA-V-EGGGVSVLVDLLLDV-----T------ERRVCELMLNVLDLLCRCAEGRAEL 309 (407)
Q Consensus 243 ~~~~~~~A~~aL~~L~~~~~n~~~~-v-~~G~v~~Lv~lL~~~-----~------~~~~~~~al~~L~~L~~~~~~r~~i 309 (407)
+++.++.|+.-|..--..-++-..+ - .-|.+..|++=+-+- + ..+-.-+|++.|..+|.+++.|..+
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F 87 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF 87 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence 5677887776666544333333333 2 358888877655442 0 1233468888899999999999999
Q ss_pred HhccCchHHHHHHHHcCC-----chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 310 LKHGAGLAVVSKKILRVS-----HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~~s-----~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
++ +...-.|.-+|...+ +-.+-.+++++..+.+. .+.++..-..+...+|.-+..|+. |++..|-.|.-+++
T Consensus 88 l~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~-d~~evi~fLl~tEiiplcLr~me~-GselSKtvAtfIlq 164 (262)
T PF04078_consen 88 LK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKT-DDPEVISFLLQTEIIPLCLRIMEF-GSELSKTVATFILQ 164 (262)
T ss_dssp HH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT---HHHHHHHHCTTHHHHHHHHHHH-S-HHHHHHHHHHHH
T ss_pred HH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcC-CcHHHHHHHHhhchHHHHHHHHHh-ccHHHHHHHHHHHH
Confidence 98 443333444343333 23467788899999974 456788888899999999999986 59999999999886
Q ss_pred HH
Q 040073 385 LN 386 (407)
Q Consensus 385 ~l 386 (407)
.+
T Consensus 165 KI 166 (262)
T PF04078_consen 165 KI 166 (262)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 217
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.37 E-value=2.1 Score=45.32 Aligned_cols=90 Identities=16% Similarity=0.201 Sum_probs=69.7
Q ss_pred chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073 156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 235 (407)
..+..|++.+..+- -.+++. .+++.+.+++.+++..+|..|+-++..+-..+.. ...+.|.+..+..+
T Consensus 107 ~iR~~AlR~ls~l~-----~~el~~----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l 174 (757)
T COG5096 107 EIRGFALRTLSLLR-----VKELLG----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKEL 174 (757)
T ss_pred HHHHHHHHHHHhcC-----hHHHHH----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHH
Confidence 45777777765543 134443 2799999999999999999999999999654432 34446888889999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
+.+. ++.+..+|+.+|..+...
T Consensus 175 ~~D~---dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 175 VADS---DPIVIANALASLAEIDPE 196 (757)
T ss_pred hhCC---CchHHHHHHHHHHHhchh
Confidence 9888 999999999999988653
No 218
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=93.24 E-value=7.4 Score=39.59 Aligned_cols=267 Identities=13% Similarity=0.075 Sum_probs=151.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcH--HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAI--EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLES 189 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i--~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~ 189 (407)
..+++++..+.+.+.. ......+...+.| .....-++.+.+ ..++-.|+.+|.+-...-.++-..=.+.+ .++..
T Consensus 149 ~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et~-~avRLaaL~aL~dsl~fv~~nf~~E~erN-y~mqv 225 (858)
T COG5215 149 SGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNETT-SAVRLAALKALMDSLMFVQGNFCYEEERN-YFMQV 225 (858)
T ss_pred HhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCch-HHHHHHHHHHHHHHHHHHHHhhcchhhhc-hhhee
Confidence 6678899999998865 2333444444432 223333333333 34688888888772211111111111111 24555
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-c-----
Q 040073 190 LMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-R----- 262 (407)
Q Consensus 190 Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~----- 262 (407)
.++.-+.++.+++..|-.+|..+... .+..+..++. -....+.+.+++. ++++...|...-.-+|..+ +
T Consensus 226 vceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~-aL~alt~~~mks~---nd~va~qavEfWsticeEeid~~~e~ 301 (858)
T COG5215 226 VCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMEN-ALAALTGRFMKSQ---NDEVAIQAVEFWSTICEEEIDGEMED 301 (858)
T ss_pred eehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCc---chHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 66777788999999999999887543 3344444443 3344455677777 8887777765443333210 0
Q ss_pred ---------h--HHHHHhcCchHHHHHHhhcc-c-----chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH--
Q 040073 263 ---------N--RIKAVEGGGVSVLVDLLLDV-T-----ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI-- 323 (407)
Q Consensus 263 ---------n--~~~~v~~G~v~~Lv~lL~~~-~-----~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l-- 323 (407)
| -....-..++|.|+.+|... + +=+.-..|...|...+..- ...+++ +...++
T Consensus 302 ~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~--gd~i~~------pVl~FvEq 373 (858)
T COG5215 302 KYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLK--GDKIMR------PVLGFVEQ 373 (858)
T ss_pred hhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHh--hhHhHH------HHHHHHHH
Confidence 1 11111235789999999763 1 1133344444444443311 112333 223322
Q ss_pred --HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccC--CCCC
Q 040073 324 --LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRD--SPCV 396 (407)
Q Consensus 324 --~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~--~~~~ 396 (407)
...+-..+|.|+.++..+..+ ++..++..++ ..++|-+...+. +..--+|..++|-+..++.+... +||.
T Consensus 374 ni~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V-~qalp~i~n~m~-D~~l~vk~ttAwc~g~iad~va~~i~p~~ 447 (858)
T COG5215 374 NIRSESWANREAAVMAFGSVMHG-PCEDCLTKIV-PQALPGIENEMS-DSCLWVKSTTAWCFGAIADHVAMIISPCG 447 (858)
T ss_pred hccCchhhhHHHHHHHhhhhhcC-ccHHHHHhhH-HhhhHHHHHhcc-cceeehhhHHHHHHHHHHHHHHHhcCccc
Confidence 233456789999999998875 4444444444 367877777665 77888999999999999987653 4664
No 219
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.18 E-value=2.5 Score=36.65 Aligned_cols=108 Identities=20% Similarity=0.267 Sum_probs=77.1
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL 236 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 236 (407)
++.+++.+++.|+..-+ . +.+. .++.+...|+++++.+|..|..+|..|...+- +-..+..+..++.++
T Consensus 4 vR~n~i~~l~DL~~r~~---~-~ve~---~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 4 VRNNAIIALGDLCIRYP---N-LVEP---YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHhCc---H-HHHh---HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHH
Confidence 57888888888875433 2 3333 68999999999999999999999999976532 222223347777888
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhc
Q 040073 237 RDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLD 282 (407)
Q Consensus 237 ~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~ 282 (407)
.+. +++++..|..++..+... .++ .+ ...++.++..|..
T Consensus 73 ~D~---~~~Ir~~A~~~~~e~~~~~~~~--~i--~~~~~e~i~~l~~ 112 (178)
T PF12717_consen 73 VDE---NPEIRSLARSFFSELLKKRNPN--II--YNNFPELISSLNN 112 (178)
T ss_pred cCC---CHHHHHHHHHHHHHHHHhccch--HH--HHHHHHHHHHHhC
Confidence 888 999999999999998875 222 22 1235555555554
No 220
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=93.11 E-value=0.094 Score=38.07 Aligned_cols=43 Identities=30% Similarity=0.494 Sum_probs=32.7
Q ss_pred cCccccccCc----Cceec-CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 11 LCPISLQLMR----DPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 11 ~Cpi~~~~~~----dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
+||-|+.-|. =||.- -|.|.|--+||.+|+.. ...||.++|+.
T Consensus 33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T--k~~CPld~q~w 80 (88)
T COG5194 33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT--KGVCPLDRQTW 80 (88)
T ss_pred cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh--CCCCCCCCcee
Confidence 6777776551 13433 59999999999999976 67899999875
No 221
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=93.11 E-value=0.2 Score=29.75 Aligned_cols=30 Identities=27% Similarity=0.228 Sum_probs=26.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhcc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV 215 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~ 215 (407)
.+|.++++++++++++|..|+.+|..+++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 378999999999999999999999998753
No 222
>PRK14707 hypothetical protein; Provisional
Probab=92.92 E-value=21 Score=42.04 Aligned_cols=269 Identities=19% Similarity=0.143 Sum_probs=141.1
Q ss_pred HHHHHHHhcC-CC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073 100 IVKILNDAKK-SP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177 (407)
Q Consensus 100 i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 177 (407)
|.-++.-++. ++ .....++..|..+...++..+..+ ..-+|..+++-+....+... ..+|+..|...-.++.....
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~~~~-c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPDTPD-CGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHcCcHHHHH
Confidence 3344444442 22 555666776666554445555555 44457778888887666433 78888877764444444555
Q ss_pred HhhccchhhHHHHHHHHhc-CChhHHHHHHHHHH-HhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH-
Q 040073 178 IVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLK-SIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL- 254 (407)
Q Consensus 178 ~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL- 254 (407)
.+... .+...+..|+. .+.....+|+.+|. .++.+..-.+ -+...+ +.-.++-|... .+..+-..|+..|
T Consensus 243 ~~~~q---~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~-al~~q~-vanalNalSKw--pd~~vc~~Aa~~la 315 (2710)
T PRK14707 243 ELKPQ---ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRK-ALDPIN-VTQALNALSKW--ADLPVCAEAAIALA 315 (2710)
T ss_pred hCChH---HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHH-hcCHHH-HHHHHhhhhcC--CCchHHHHHHHHHH
Confidence 55433 36666677765 55556666666665 4554333332 333233 45555555544 2444444444444
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHH-HHHhcCHhhHHHHHhccCchHHHHHHHHcCC-chhhH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVL-DLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HAASD 332 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L-~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e 332 (407)
..|.....-++. ++.-.+...+.-|..=++..+...|+.+| ..|+..++-+..+ + ..|+...+.-+.+.. .....
T Consensus 316 ~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l-~-~q~~a~~lNalsKWp~~~~c~ 392 (2710)
T PRK14707 316 ERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDL-E-PQGVSSVLNALSKWPDTPVCA 392 (2710)
T ss_pred HHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhccc-c-hhHHHHHHhhhhcCCCchHHH
Confidence 455553333332 33323455555554433444444444444 4777766666554 3 356777777776653 33344
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.|+..|..=..+ +.+ ..+..+..++..++.-|...++..+...|+..|
T Consensus 393 ~aa~~LA~~l~~--d~~-l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~l 440 (2710)
T PRK14707 393 AAASALAEHVVD--DLE-LRKGLDPQGVSNALNALAKWPDLPICGQAVSAL 440 (2710)
T ss_pred HHHHHHHHHhcc--Chh-hhhhcchhhHHHHHHHhhcCCcchhHHHHHHHH
Confidence 444444333322 222 334444455666666666555555555555543
No 223
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=92.68 E-value=9.2 Score=36.14 Aligned_cols=181 Identities=15% Similarity=0.121 Sum_probs=108.7
Q ss_pred HHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhh--
Q 040073 146 TIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLIS-- 223 (407)
Q Consensus 146 ~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-- 223 (407)
..+.+.+. .+++.|+..|+..+.-+. +... . .++.+...++.++..++..|..+|..+.........-.
T Consensus 34 P~v~~~~~--~vR~~al~cLGl~~Lld~---~~a~-~---~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~ 104 (298)
T PF12719_consen 34 PAVQSSDP--AVRELALKCLGLCCLLDK---ELAK-E---HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSES 104 (298)
T ss_pred HHhcCCCH--HHHHHHHHHHHHHHHhCh---HHHH-H---HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchh
Confidence 33444444 579999999999887653 2222 2 58888888888899999999999998865433211111
Q ss_pred ------chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHH
Q 040073 224 ------VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLN 294 (407)
Q Consensus 224 ------~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~ 294 (407)
.....++.+.+.+.+. +++++..|+..+..|-....... ....+..|+-+-.+.. +..++ .+++
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~---~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~Lr-Q~L~ 177 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSE---NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLR-QCLS 177 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHH-HHHH
Confidence 1135777888888888 99999999999999876544222 1234445544443321 23333 3333
Q ss_pred H-HHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc----h---hhHHHHHHHHHHhcc
Q 040073 295 V-LDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH----A---ASDRAVRILCSVCKF 344 (407)
Q Consensus 295 ~-L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~----~---~~e~a~~~L~~l~~~ 344 (407)
. +-..+. +..++..+.+ +.+|.+-.+...... . .-......+..++..
T Consensus 178 ~Ffp~y~~s~~~~Q~~l~~--~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~~ 234 (298)
T PF12719_consen 178 VFFPVYASSSPENQERLAE--AFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTDP 234 (298)
T ss_pred HHHHHHHcCCHHHHHHHHH--HHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCCh
Confidence 3 345555 4445555544 467776664433221 1 133445566666653
No 224
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=92.66 E-value=0.87 Score=37.98 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.0
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..+.+.|...++..+-.|+.+|-.+.++++. .+..++.+.+.+..|+.++.....+.+|+++..+++.-.......|
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 120 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGT-HFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFRNKP 120 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 456778888778899999999999999988765 4788888889999999999866789999999999988777665554
No 225
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=92.40 E-value=3 Score=42.02 Aligned_cols=152 Identities=18% Similarity=0.113 Sum_probs=107.4
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCHh
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAE 304 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~~ 304 (407)
....+.+++.++ +...+..|+..|..|+....-...+++..++..|.+++.++. ..++...++.++..+-.++-
T Consensus 84 ~a~~i~e~l~~~---~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv 160 (713)
T KOG2999|consen 84 YAKRIMEILTEG---NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV 160 (713)
T ss_pred HHHHHHHHHhCC---CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence 356678888888 888888899999999998888899999999999999998873 34566667777776665443
Q ss_pred hHHHHHhccCchHHHHHHH--HcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHH
Q 040073 305 GRAELLKHGAGLAVVSKKI--LRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREI 382 (407)
Q Consensus 305 ~r~~i~~~~g~i~~Lv~~l--~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~l 382 (407)
.-...+.. .+|...+.+. .......-..|+..|-++..++.. ...-+.+.--+..|+..++.. +.+....|-.+
T Consensus 161 vsW~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~--~~~~v~eev~i~~li~hlq~~-n~~i~~~aial 236 (713)
T KOG2999|consen 161 VSWESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDT--LRQLVAEEVPIETLIRHLQVS-NQRIQTCAIAL 236 (713)
T ss_pred eeeeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChH--HHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHH
Confidence 22222221 2333333322 223456678899999999886543 466666778899999999954 66666667777
Q ss_pred HHHH
Q 040073 383 LKLN 386 (407)
Q Consensus 383 L~~l 386 (407)
+..+
T Consensus 237 ~nal 240 (713)
T KOG2999|consen 237 LNAL 240 (713)
T ss_pred HHHH
Confidence 7554
No 226
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=92.39 E-value=1.3 Score=40.76 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH-HhcCHhhHHHHHhccCchHHHH
Q 040073 243 SQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL-LCRCAEGRAELLKHGAGLAVVS 320 (407)
Q Consensus 243 ~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~-L~~~~~~r~~i~~~~g~i~~Lv 320 (407)
+......|+..|--++. +++.+..+.+..++..|+.+|....++.++..++.+|.. |..++.+.+.+-+ .+|+..++
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~-~~Gl~~v~ 182 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEE-LNGLSTVC 182 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHH-hCCHHHHH
Confidence 34456778899998888 667888888899999999999554367788888888774 4557788777766 67899999
Q ss_pred HHHHcC--CchhhHHHHHHHHHHhcc
Q 040073 321 KKILRV--SHAASDRAVRILCSVCKF 344 (407)
Q Consensus 321 ~~l~~~--s~~~~e~a~~~L~~l~~~ 344 (407)
.++.+. +...+-.++..|+-....
T Consensus 183 ~llk~~~~~~~~r~K~~EFL~fyl~~ 208 (257)
T PF08045_consen 183 SLLKSKSTDRELRLKCIEFLYFYLMP 208 (257)
T ss_pred HHHccccccHHHhHHHHHHHHHHHcc
Confidence 977654 366777788888877764
No 227
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.32 E-value=0.74 Score=39.13 Aligned_cols=143 Identities=19% Similarity=0.183 Sum_probs=91.6
Q ss_pred HHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-h
Q 040073 187 LESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-N 263 (407)
Q Consensus 187 i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n 263 (407)
++.++..|.. .+.++|..+.-++..+. +..+..+.. -+-+.+-.++..+ +.+....+..+|..|-.... -
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~-~~~~~i~~~~~~~---~~d~~i~~~~~l~~lfp~~~dv 77 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKE-KISDFIESLLDEG---EMDSLIIAFSALTALFPGPPDV 77 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHH-HHHHHHHHHHCCH---HCCHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHH-HHHHHHHHHHccc---cchhHHHHHHHHHHHhCCCHHH
Confidence 5566666653 68889999988888873 222222221 1222333344443 44467778888888776544 3
Q ss_pred HHH-HHhcCchHHHHHHhh--cccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-ch-hhHHHHHHH
Q 040073 264 RIK-AVEGGGVSVLVDLLL--DVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS-HA-ASDRAVRIL 338 (407)
Q Consensus 264 ~~~-~v~~G~v~~Lv~lL~--~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s-~~-~~e~a~~~L 338 (407)
... +...|.++.++.++. .. +..+...++.+|..-|.....|..|..+ |++.|-+...... +. .+..|+-+|
T Consensus 78 ~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~~--~~~~L~~~~~~~~~~~~ir~~A~v~L 154 (157)
T PF11701_consen 78 GSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISKN--YVSWLKELYKNSKDDSEIRVLAAVGL 154 (157)
T ss_dssp HHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHHH--CHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHHH--HHHHHHHHHccccchHHHHHHHHHHH
Confidence 333 456899999999998 43 6788889999999988888888877774 6787777543333 33 466665555
Q ss_pred H
Q 040073 339 C 339 (407)
Q Consensus 339 ~ 339 (407)
.
T Consensus 155 ~ 155 (157)
T PF11701_consen 155 C 155 (157)
T ss_dssp H
T ss_pred h
Confidence 4
No 228
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=92.24 E-value=0.067 Score=36.52 Aligned_cols=39 Identities=18% Similarity=0.322 Sum_probs=24.5
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
+.|.||.|++-|... .+.+.+.++...+.....||+|..
T Consensus 1 ~~f~CP~C~~~~~~~-------~L~~H~~~~H~~~~~~v~CPiC~~ 39 (54)
T PF05605_consen 1 DSFTCPYCGKGFSES-------SLVEHCEDEHRSESKNVVCPICSS 39 (54)
T ss_pred CCcCCCCCCCccCHH-------HHHHHHHhHCcCCCCCccCCCchh
Confidence 479999998833222 455555555554333577999965
No 229
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=92.21 E-value=0.064 Score=38.56 Aligned_cols=50 Identities=24% Similarity=0.369 Sum_probs=36.5
Q ss_pred CCCcccCccccccCcC-ceec-CCcccccHHHHHHHHhcCCC-CCCccccccc
Q 040073 6 VPAHFLCPISLQLMRD-PVTV-STGITYDRVNIERWLFTCKN-NTCPVTKQVL 55 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~d-Pv~~-~~g~t~~r~~i~~~~~~~~~-~~cP~~~~~~ 55 (407)
+|-+-+||-|.-.=.| |.++ -|-|.|-+.||.+|+....+ ..||-|+|..
T Consensus 28 m~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~ 80 (84)
T KOG1493|consen 28 MPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTW 80 (84)
T ss_pred cccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchhee
Confidence 4555677777644444 5555 59999999999999976433 6799999875
No 230
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=92.20 E-value=3.9 Score=44.99 Aligned_cols=229 Identities=13% Similarity=0.050 Sum_probs=130.9
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHh---hhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-----
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSIT---LQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNV----- 170 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~---~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~----- 170 (407)
+|.++..+..+. .+|..|+..|..+. ++-+..-..+.-.-.+|.|-.++.+..... ++-.-+.-|..||.
T Consensus 464 lPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~-vRiayAsnla~LA~tA~rF 542 (1431)
T KOG1240|consen 464 LPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQI-VRIAYASNLAQLAKTAYRF 542 (1431)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccce-ehhhHHhhHHHHHHHHHHH
Confidence 344444455555 88888888888764 232333334444556788888887743311 12211112222211
Q ss_pred -------------ChhHH-----------HhHhhccchhhHH-HHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhch
Q 040073 171 -------------SESYL-----------KSIVINNGEEFLE-SLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVK 225 (407)
Q Consensus 171 -------------~~~~~-----------~~~i~~~gg~~i~-~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~ 225 (407)
++.++ ...+. +.++ ..+.+|..+++-+|..-...|..|+..=- +....
T Consensus 543 le~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~----~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFG---k~ksN 615 (1431)
T KOG1240|consen 543 LELTQELRQAGMLNDPNSETAPEQNYNTELQALH----HTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFG---KEKSN 615 (1431)
T ss_pred HHHHHHHHhcccccCcccccccccccchHHHHHH----HHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhh---hcccc
Confidence 11111 00011 1233 33455555555677666666666653210 01111
Q ss_pred hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh
Q 040073 226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG 305 (407)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~ 305 (407)
.=.++.|+.+|++. +...+-+-...|..++..-.- +-++++.+|.|.+-|.++ .+.+...|+..|..|+..+--
T Consensus 616 D~iLshLiTfLNDk---Dw~LR~aFfdsI~gvsi~VG~--rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik~~ll 689 (1431)
T KOG1240|consen 616 DVILSHLITFLNDK---DWRLRGAFFDSIVGVSIFVGW--RSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIKLGLL 689 (1431)
T ss_pred cchHHHHHHHhcCc---cHHHHHHHHhhccceEEEEee--eeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHHhccc
Confidence 12678899999888 888887777777766553222 226778899999999887 788999999999999987655
Q ss_pred HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 306 RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 306 r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
|+..+-+ .+....-+|-..+.-.+..++.++..+...
T Consensus 690 ~K~~v~~--i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 690 RKPAVKD--ILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred chHHHHH--HHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 4443331 122222223444667788888988888764
No 231
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=92.15 E-value=2.7 Score=39.01 Aligned_cols=177 Identities=17% Similarity=0.175 Sum_probs=106.2
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccC
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVA 216 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~ 216 (407)
...+..++....... +-=++.+++.+..+.... ..+...+++....+..++.. .+...+.-+.+++.|+-.+.
T Consensus 65 ~~~~~~~~~~Wp~~~--~fP~lDLlRl~~l~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~ 141 (268)
T PF08324_consen 65 LILLLKILLSWPPES--RFPALDLLRLAALHPPAS-DLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP 141 (268)
T ss_dssp HHHHHHHHCCS-CCC---HHHHHHHHHHCCCHCHH-HHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhCCCcc--chhHHhHHHHHHhCccHH-HHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC
Confidence 455566666665533 777888888888877543 44444331124555555543 46777889999999998888
Q ss_pred Cchhhhhchhh-hHHHHHHHcccCCCC---CHHHHHHHHHHHHHhCCCCc-hH-HHHHhcCchHHHHHHhhc-ccchhHH
Q 040073 217 DPFQLISVKQE-FFTEIVNVLRDHHQF---SQQASKAALKLLVELCPWGR-NR-IKAVEGGGVSVLVDLLLD-VTERRVC 289 (407)
Q Consensus 217 ~~~~~i~~~~g-~i~~Lv~lL~~~~~~---~~~~~~~A~~aL~~L~~~~~-n~-~~~v~~G~v~~Lv~lL~~-~~~~~~~ 289 (407)
..+..+....+ .+...+..+... . +..++.+++..++|++..-- ++ ..-.....+..+++.+.. ..+.+..
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~ 219 (268)
T PF08324_consen 142 PGRQLLLSHFDSSILELLSSLLSS--LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEAL 219 (268)
T ss_dssp CCHHHHHCTHHTCHHHHCHCCCTT--S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHH
T ss_pred ccHHHHHhcccchHHHHHHHHhhc--cccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHH
Confidence 87777766544 344444433332 1 56788888999999986211 11 000111235555564332 2378888
Q ss_pred HHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHH
Q 040073 290 ELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKI 323 (407)
Q Consensus 290 ~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l 323 (407)
-+++.+|.+|...+......... -++...+...
T Consensus 220 ~R~LvAlGtL~~~~~~~~~~~~~-l~~~~~~~~~ 252 (268)
T PF08324_consen 220 YRLLVALGTLLSSSDSAKQLAKS-LDVKSVLSKK 252 (268)
T ss_dssp HHHHHHHHHHHCCSHHHHHHCCC-CTHHHHHHHH
T ss_pred HHHHHHHHHHhccChhHHHHHHH-cChHHHHHHH
Confidence 99999999999777666655542 3455554434
No 232
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=92.13 E-value=1.1 Score=37.56 Aligned_cols=79 Identities=20% Similarity=0.268 Sum_probs=66.1
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..|.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.....+.+|+++..+++..+....+.|
T Consensus 38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~ 116 (144)
T cd03568 38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGK-RFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDP 116 (144)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 456777878777899999999999999998875 4888888889999999999865789999999999988777666554
No 233
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.09 E-value=1.1 Score=38.47 Aligned_cols=111 Identities=21% Similarity=0.198 Sum_probs=70.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+..+..+|++++.+.|-.++..+.........-.......-.+..|+.+|+.. .+..+.+.+..+|..|...-.+..
T Consensus 26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~--~~~~~~~~ai~~L~~l~~~~~~~p 103 (165)
T PF08167_consen 26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKP--DPPSVLEAAIITLTRLFDLIRGKP 103 (165)
T ss_pred HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHHHHhcCCC
Confidence 577788899999999999999999988765433222222233888999999876 266778888888777655333333
Q ss_pred HHHhc-------CchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 266 KAVEG-------GGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 266 ~~v~~-------G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.+.++ +.++.+++++.+ ....+.++.+|..+-.
T Consensus 104 ~l~Rei~tp~l~~~i~~ll~l~~~---~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 104 TLTREIATPNLPKFIQSLLQLLQD---SSCPETALDALATLLP 143 (165)
T ss_pred chHHHHhhccHHHHHHHHHHHHhc---cccHHHHHHHHHHHHH
Confidence 33322 233444444432 3556677777776644
No 234
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=91.99 E-value=0.074 Score=46.96 Aligned_cols=44 Identities=20% Similarity=0.175 Sum_probs=35.8
Q ss_pred ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
.+|||+.+....|++. .|.|.|+|..|.+++...-...||.-..
T Consensus 190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~C 234 (275)
T COG5627 190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLIC 234 (275)
T ss_pred ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhc
Confidence 4899999999999866 4999999999999986322577886443
No 235
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=91.96 E-value=0.27 Score=29.15 Aligned_cols=29 Identities=21% Similarity=0.327 Sum_probs=25.0
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
.+|.++++++++ +++++.+|+.+|.+++.
T Consensus 1 llp~l~~~l~D~---~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDP---SPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-S---SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCC---CHHHHHHHHHHHHHHHh
Confidence 478899999998 99999999999998864
No 236
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=91.92 E-value=8.9 Score=38.17 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=100.0
Q ss_pred HHHHcccCCCCCHHHHHHHHHHHHHhCCCCc----hHHHHHhcCchHHHHHHhhccc------chhHHHHHHHHHHHHhc
Q 040073 232 IVNVLRDHHQFSQQASKAALKLLVELCPWGR----NRIKAVEGGGVSVLVDLLLDVT------ERRVCELMLNVLDLLCR 301 (407)
Q Consensus 232 Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~----n~~~~v~~G~v~~Lv~lL~~~~------~~~~~~~al~~L~~L~~ 301 (407)
+..+++.+ +++-+-+|+-..-.++.+++ ||+.+.++=+++-+-.+|.+++ +.-.+.-++.+|...|.
T Consensus 16 ~~~L~~~k---~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 16 CLKLLKGK---RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred HHHHhccc---ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 55566665 77777777777778887665 8888999888999999997752 33446678888998888
Q ss_pred CHhh--HHHHHhccCchHHHHHHHHcCC-ch------hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCC
Q 040073 302 CAEG--RAELLKHGAGLAVVSKKILRVS-HA------ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDAS 372 (407)
Q Consensus 302 ~~~~--r~~i~~~~g~i~~Lv~~l~~~s-~~------~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~ 372 (407)
.++- ..++++ .||.|...|..+. +. .-+.+-.+|..++..... ....+..|+++.+..+-..++-
T Consensus 93 ~pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G---~~~Lia~G~~~~~~Q~y~~~~~ 166 (698)
T KOG2611|consen 93 VPELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAG---LMTLIASGGLRVIAQMYELPDG 166 (698)
T ss_pred ChhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCch---hHHHHhcCchHHHHHHHhCCCC
Confidence 7752 345554 4899999887653 22 467788899999987554 6777889999999866443333
Q ss_pred HHHHHHHHHHH
Q 040073 373 VKTKERAREIL 383 (407)
Q Consensus 373 ~~~k~~A~~lL 383 (407)
.....-|-.++
T Consensus 167 ~~d~alal~Vl 177 (698)
T KOG2611|consen 167 SHDMALALKVL 177 (698)
T ss_pred chhHHHHHHHH
Confidence 33333333333
No 237
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=91.78 E-value=1.1 Score=34.77 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=50.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
.+++++..+...+..+|..|+.+|.+++....... +.....++..|.+++.+. ++.++.. +..|-+|
T Consensus 28 Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~-l~~f~~IF~~L~kl~~D~---d~~Vr~~-a~~Ld~l 94 (97)
T PF12755_consen 28 ILPPVLKCFDDQDSRVRYYACEALYNISKVARGEI-LPYFNEIFDALCKLSADP---DENVRSA-AELLDRL 94 (97)
T ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCC---chhHHHH-HHHHHHH
Confidence 78999999999999999999999999986654322 222346888899999876 6665554 4555544
No 238
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=91.71 E-value=1.5 Score=36.08 Aligned_cols=78 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhccC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV--DASVKTKERAREILKLNARAWRD 392 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~k~~A~~lL~~l~~~~~~ 392 (407)
++..|-+.|...++..+-.|+.+|-.+..+++. .+..++.....+..|+.++.. ...+.+|+++..+++........
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~-~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGK-PFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCh-HHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 355677778778899999999999999988765 367777777888889999875 35889999999999988887766
Q ss_pred C
Q 040073 393 S 393 (407)
Q Consensus 393 ~ 393 (407)
+
T Consensus 117 ~ 117 (133)
T cd03561 117 H 117 (133)
T ss_pred C
Confidence 5
No 239
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=91.52 E-value=14 Score=35.63 Aligned_cols=197 Identities=11% Similarity=0.064 Sum_probs=131.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh------hhhch-hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ------LISVK-QEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~------~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
.+..|+..|..-+.+.|..++.+..++.....+.. .+... ..++..|+.-.+ ++++.-.+-..|+...
T Consensus 77 ll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~-----~~dial~~g~mlRec~ 151 (335)
T PF08569_consen 77 LLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE-----NPDIALNCGDMLRECI 151 (335)
T ss_dssp HHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG-----STTTHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc-----CccccchHHHHHHHHH
Confidence 78899999999999999999999999876543221 12222 233333333332 4566667777888888
Q ss_pred CCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH-hcCHhhHHHHHhcc--CchHHHHHHHHcCCchhhHHHH
Q 040073 259 PWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL-CRCAEGRAELLKHG--AGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 259 ~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L-~~~~~~r~~i~~~~--g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
.++.-.+.+.+...+..+.+.+... +=++...|..++..| ..+..--.+..... ..+....++|.+.+-.++..++
T Consensus 152 k~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 152 KHESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp TSHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hhHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 8877777788877888888887765 668889999999974 55555444454432 2233444444445678899999
Q ss_pred HHHHHHhccCCchHHHHH-HHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 336 RILCSVCKFSATARVLQE-MLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 336 ~~L~~l~~~~~~~~~~~~-~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
..|..+-....+-.+... +-+..-+..++.+|+ +.+...+-.|..+.|.+...
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~-d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR-DKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT--S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc-CcchhhhHHHHHHHHHHHhC
Confidence 999999976666444333 334455666666776 56999999999999998763
No 240
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.88 E-value=8.7 Score=41.92 Aligned_cols=259 Identities=15% Similarity=0.144 Sum_probs=138.5
Q ss_pred HHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcC
Q 040073 118 LRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCG 197 (407)
Q Consensus 118 l~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~ 197 (407)
-.+|-.+.+.+.+|...+.++.++..++.++-++.. +...+.++..|-..+. +++ .. +-+-.+|..|++|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflindeh----RSslLrivscLitvdp--kqv-hh---qelmalVdtLksg 732 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLINDEH----RSSLLRIVSCLITVDP--KQV-HH---QELMALVDTLKSG 732 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeechHH----HHHHHHHHHHHhccCc--ccc-cH---HHHHHHHHHHHhc
Confidence 457788889999999999998888887777744322 3333444443332221 221 11 1355677777763
Q ss_pred C------------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc--C--C--C-CCH----HHHHHHHHHH
Q 040073 198 N------------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD--H--H--Q-FSQ----QASKAALKLL 254 (407)
Q Consensus 198 ~------------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~--~--~--~-~~~----~~~~~A~~aL 254 (407)
- .+.......+++.+-..+...+..+..+|++..|...|.. + + + .+. +..+.-.+..
T Consensus 733 mvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlf 812 (2799)
T KOG1788|consen 733 MVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLF 812 (2799)
T ss_pred ceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHH
Confidence 2 1233455666777655444444443334556666665531 0 0 0 011 1111111111
Q ss_pred -HHhCCCCchHHHHHhcCchHHHHHHhhcc-----------------------cchhHHH--HHHHHHHHHhc-------
Q 040073 255 -VELCPWGRNRIKAVEGGGVSVLVDLLLDV-----------------------TERRVCE--LMLNVLDLLCR------- 301 (407)
Q Consensus 255 -~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-----------------------~~~~~~~--~al~~L~~L~~------- 301 (407)
..+|.+..|++.+-..=--+.+.++|... ..+.+.. .|+...-.+-.
T Consensus 813 TlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavnt 892 (2799)
T KOG1788|consen 813 TLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNT 892 (2799)
T ss_pred HHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeecc
Confidence 12233445554432111111122222211 0111111 12222222210
Q ss_pred ----CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc--CCCHHH
Q 040073 302 ----CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV--DASVKT 375 (407)
Q Consensus 302 ----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~--~~~~~~ 375 (407)
....+++|.. .|.+..++.+++...++.+-.-+..|..+++.++.. .+..-..|+++.|++++-- .++.--
T Consensus 893 PsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfn--aelltS~gcvellleIiypflsgsspf 969 (2799)
T KOG1788|consen 893 PSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFN--AELLTSAGCVELLLEIIYPFLSGSSPF 969 (2799)
T ss_pred CCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCc--hhhhhcccHHHHHHHHhhhhhcCCchH
Confidence 1123556666 678999999998888999988999999999977653 4444467999999888632 134445
Q ss_pred HHHHHHHHHHHHhh
Q 040073 376 KERAREILKLNARA 389 (407)
Q Consensus 376 k~~A~~lL~~l~~~ 389 (407)
-..|.+++.+|.-+
T Consensus 970 LshalkIvemLgay 983 (2799)
T KOG1788|consen 970 LSHALKIVEMLGAY 983 (2799)
T ss_pred hhccHHHHHHHhhc
Confidence 67788888888763
No 241
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=90.87 E-value=16 Score=39.88 Aligned_cols=148 Identities=16% Similarity=0.126 Sum_probs=95.1
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r 306 (407)
+++..|...|++. +..++..|++-+..+....+ ..+++. +|...++++....+....-.++-+|+.|+.-+=-.
T Consensus 341 ~vie~Lls~l~d~---dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDT---DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHhccCC---cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence 6788888888888 89999999999999988655 444443 57777787766544566678888999998744222
Q ss_pred HHHHhccCchHHHHHHHHc--------CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH-HHHhcCCCHHHHH
Q 040073 307 AELLKHGAGLAVVSKKILR--------VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC-LVLQVDASVKTKE 377 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~l~~--------~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll-~ll~~~~~~~~k~ 377 (407)
-.... ..+|.+++.+.- .+...++.|+-+.|.+++......+.. .++ ..+..|+ ..+- +.+-..|+
T Consensus 415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlF-DrevncRR 489 (1133)
T KOG1943|consen 415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALF-DREVNCRR 489 (1133)
T ss_pred hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhc-CchhhHhH
Confidence 22222 246666664421 136789999999999998654322222 222 1222232 2233 44667777
Q ss_pred HHHHHHHH
Q 040073 378 RAREILKL 385 (407)
Q Consensus 378 ~A~~lL~~ 385 (407)
.|+++++-
T Consensus 490 AAsAAlqE 497 (1133)
T KOG1943|consen 490 AASAALQE 497 (1133)
T ss_pred HHHHHHHH
Confidence 77776654
No 242
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.87 E-value=13 Score=38.25 Aligned_cols=135 Identities=18% Similarity=0.168 Sum_probs=83.8
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
......++...+++...+.-|..-|....++=|+..+. +|..++.|.++.+. .++..|+..|-.+|.++.
T Consensus 22 ~~~y~~il~~~kg~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~--~iR~~aik~lp~~ck~~~--- 91 (556)
T PF05918_consen 22 EEDYKEILDGVKGSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDV--QIRKQAIKGLPQLCKDNP--- 91 (556)
T ss_dssp HHHHHHHHHGGGS-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSH--HHHHHHHHHGGGG--T-----
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--HHHHHHHHhHHHHHHhHH---
Confidence 34555666655655466666777777776665655444 46778888886665 569999999999997643
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cCCCCCHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DHHQFSQQASKAALKL 253 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~~~A~~a 253 (407)
+.+.. +...|+++|.+.+......+-.+|..|...+. .+.+..|...+. ++ +..+++.++..
T Consensus 92 ~~v~k----vaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~---de~~Re~~lkF 156 (556)
T PF05918_consen 92 EHVSK----VADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSG---DEQVRERALKF 156 (556)
T ss_dssp T-HHH----HHHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS----HHHHHHHHHH
T ss_pred HHHhH----HHHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccC---chHHHHHHHHH
Confidence 44432 57889999999888888888888887764432 234455555444 55 67788888877
Q ss_pred HHH
Q 040073 254 LVE 256 (407)
Q Consensus 254 L~~ 256 (407)
|..
T Consensus 157 l~~ 159 (556)
T PF05918_consen 157 LRE 159 (556)
T ss_dssp HHH
T ss_pred HHH
Confidence 753
No 243
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.86 E-value=0.15 Score=48.45 Aligned_cols=33 Identities=27% Similarity=0.564 Sum_probs=31.3
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFT 42 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~ 42 (407)
..|.+++..|.|||-+..|-.||-..|-.|++.
T Consensus 41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk 73 (518)
T KOG0883|consen 41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK 73 (518)
T ss_pred hhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence 489999999999999999999999999999986
No 244
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=90.82 E-value=1.7 Score=35.75 Aligned_cols=80 Identities=15% Similarity=0.227 Sum_probs=64.0
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH-HHHHHHHHHHHHHhhccCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK-TKERAREILKLNARAWRDS 393 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~-~k~~A~~lL~~l~~~~~~~ 393 (407)
++..|-+.|...++..+-.|+.+|-.+..+++. .+..++.+.+.+..|..++....+.. +|+++..++..-.....+.
T Consensus 38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~-~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~ 116 (133)
T smart00288 38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGS-KFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFKND 116 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCH-HHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCC
Confidence 355677778777899999999999999988765 47788888899999999888654444 9999999998877776655
Q ss_pred CC
Q 040073 394 PC 395 (407)
Q Consensus 394 ~~ 395 (407)
|-
T Consensus 117 ~~ 118 (133)
T smart00288 117 PD 118 (133)
T ss_pred CC
Confidence 53
No 245
>PRK14707 hypothetical protein; Provisional
Probab=90.68 E-value=42 Score=39.77 Aligned_cols=282 Identities=15% Similarity=0.085 Sum_probs=161.5
Q ss_pred CCCCCChhhHHHHHHHhcC-CC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh-
Q 040073 91 PQPPVDKTQIVKILNDAKK-SP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH- 167 (407)
Q Consensus 91 ~~~~~~~~~i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~- 167 (407)
.+..++...|..++.-++. ++ .....++..|.....+.... .+-.+.-.+-..++.|....+. .++.+|+..|..
T Consensus 198 ~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l-~~~~~~q~va~~lN~lsKwp~~-~~C~~a~~~lA~r 275 (2710)
T PRK14707 198 LRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRL-RNELKPQELGNALNALSKWADT-PVCAAAASALAER 275 (2710)
T ss_pred hhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHH-HHhCChHHHHHHHHHHhcCCCc-hHHHHHHHHHHHH
Confidence 3456778888888888764 33 66777888887765554444 3334444577777888877663 358888877764
Q ss_pred cCCChhHHHhHhhccchhhHHHHHHHHhc-CChhH-HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH
Q 040073 168 LNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQS-RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ 245 (407)
Q Consensus 168 L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 245 (407)
+. .+...++.+... -+.-.+.-|+. .+..+ +..|..+-..|....+-.. .....+ +.-+++-|.... -+..
T Consensus 276 l~-~~~~l~~al~~q---~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~-~~~~~~-~~~~LNalsKWp-d~~~ 348 (2710)
T PRK14707 276 LV-DDPGLRKALDPI---NVTQALNALSKWADLPVCAEAAIALAERLADDPELCK-ALNARG-LSTALNALSKWP-DNPV 348 (2710)
T ss_pred Hh-hhHHHHHhcCHH---HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhh-ccchHH-HHHHHHHhhcCC-Cchh
Confidence 44 333445555433 25555555654 44444 4455555556765444333 333334 566667676540 1455
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH-HHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073 246 ASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD-LLCRCAEGRAELLKHGAGLAVVSKKIL 324 (407)
Q Consensus 246 ~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~-~L~~~~~~r~~i~~~~g~i~~Lv~~l~ 324 (407)
+..+|...-..|+..++-++.+--.| |...+.-|..=++......++..|. .|..+.+-+..+- ..+|..++.-+.
T Consensus 349 C~~Aa~~LA~rl~~d~~l~~~l~~q~-~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~--~Q~van~lnals 425 (2710)
T PRK14707 349 CAAAVSALAERLVADPELRKDLEPQG-VSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLD--PQGVSNALNALA 425 (2710)
T ss_pred HHHHHHHHHHHhccCHhhhcccchhH-HHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcc--hhhHHHHHHHhh
Confidence 66665555556777766666654344 5666655544335555555555555 6777777676653 457888888777
Q ss_pred cC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Q 040073 325 RV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDA-SVKTKERAREILKLNA 387 (407)
Q Consensus 325 ~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~l~ 387 (407)
+. .......++..|..-..+ +.+.++. .+...|...+..|...+ ++..++.|..|...|.
T Consensus 426 KWPd~~~C~~aa~~lA~~la~--d~~l~~~-~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~ 487 (2710)
T PRK14707 426 KWPDLPICGQAVSALAGRLAH--DTELCKA-LDPINVTQALDALSKWPDTPICGQTASALAARLA 487 (2710)
T ss_pred cCCcchhHHHHHHHHHHHHhc--cHHHHhh-cChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhc
Confidence 65 344444455555444433 3334433 33333555666666554 5555555555555554
No 246
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=90.66 E-value=0.18 Score=46.91 Aligned_cols=47 Identities=15% Similarity=0.316 Sum_probs=33.0
Q ss_pred cCccccccCcCce----ecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 11 LCPISLQLMRDPV----TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 11 ~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
.||+|.+.|.--= --+||+..||-|-..-.+. -+..||.|+..+++.
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~-lngrcpacrr~y~de 66 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN-LNGRCPACRRKYDDE 66 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh-ccCCChHhhhhcccc
Confidence 3999999885321 2369998888885543332 367899999887653
No 247
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=90.65 E-value=14 Score=35.54 Aligned_cols=194 Identities=15% Similarity=0.164 Sum_probs=124.7
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhH-----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 101 VKILNDAKKSP-STGRKCLRRLRSITLQSERN-----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~-----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
..|+..|..=+ +.+..+......+.+..... .+.+... .-..|..++...+.+ +..-.+-.+|.....++.
T Consensus 79 ~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~-~peil~~L~~gy~~~-dial~~g~mlRec~k~e~- 155 (335)
T PF08569_consen 79 YLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERH-RPEILDILLRGYENP-DIALNCGDMLRECIKHES- 155 (335)
T ss_dssp HHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT---THHHHHHHHGGGST-TTHHHHHHHHHHHTTSHH-
T ss_pred HHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhC-CHHHHHHHHHHhcCc-cccchHHHHHHHHHhhHH-
Confidence 34444444444 66666666666666553333 2333332 123333333333332 335666668888887765
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhh--chhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLIS--VKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
..+++...+ .+..+....+.++-++...|..++..+...+... .... ....++...-.+|.++ +--+++.++
T Consensus 156 l~~~iL~~~--~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~---NYvtkrqsl 230 (335)
T PF08569_consen 156 LAKIILYSE--CFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS---NYVTKRQSL 230 (335)
T ss_dssp HHHHHHTSG--GGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S---SHHHHHHHH
T ss_pred HHHHHhCcH--HHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC---CeEeehhhH
Confidence 445555554 6888999999999999999999999875543321 2221 2234677778899888 999999999
Q ss_pred HHHHHhCCCCchHHHHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 252 KLLVELCPWGRNRIKAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
..|..|-.++.|...|.. ..-+..++.+|++. +..++-+|..++.....++
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp 285 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP 285 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence 999999999888776554 34577788888886 7899999999998776655
No 248
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=0.15 Score=48.15 Aligned_cols=46 Identities=24% Similarity=0.374 Sum_probs=39.1
Q ss_pred ccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.|=||+.--+|=|++||-|. .|..|-+..-- .++.||+|++++..
T Consensus 291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~--q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRY--QTNNCPICRQPIEE 337 (349)
T ss_pred CeeEEEecCCcceEEecchhhehhHhHHHHHHH--hhcCCCccccchHh
Confidence 589999999999999999998 78888777543 27789999998865
No 249
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.57 E-value=0.16 Score=38.80 Aligned_cols=27 Identities=30% Similarity=0.587 Sum_probs=23.9
Q ss_pred CCcccccHHHHHHHHhcCCCCCCcccccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
.|.|.|--.||.+|++. +..||.+.++
T Consensus 80 ~CNHaFH~hCisrWlkt--r~vCPLdn~e 106 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT--RNVCPLDNKE 106 (114)
T ss_pred ecchHHHHHHHHHHHhh--cCcCCCcCcc
Confidence 48999999999999986 7889999774
No 250
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.43 E-value=1.2 Score=36.95 Aligned_cols=79 Identities=18% Similarity=0.238 Sum_probs=63.6
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHH---HHHHHHHHHHHHHhhcc
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVK---TKERAREILKLNARAWR 391 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~---~k~~A~~lL~~l~~~~~ 391 (407)
++..|.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|..++....... +|+++..+|+.......
T Consensus 43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~-~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~ 121 (140)
T PF00790_consen 43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGP-RFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK 121 (140)
T ss_dssp HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCH-HHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence 355777888888899999999999999987754 47788888889999999888665555 89999999988887765
Q ss_pred CCC
Q 040073 392 DSP 394 (407)
Q Consensus 392 ~~~ 394 (407)
..|
T Consensus 122 ~~~ 124 (140)
T PF00790_consen 122 SDP 124 (140)
T ss_dssp TST
T ss_pred CCC
Confidence 444
No 251
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=90.14 E-value=8.8 Score=37.65 Aligned_cols=125 Identities=14% Similarity=0.177 Sum_probs=82.2
Q ss_pred CCChhhHHHHHHHhc-CCC----hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh-ccCC-CCchHHHHHHHHH
Q 040073 94 PVDKTQIVKILNDAK-KSP----STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT-KSDA-GSDECDEALSILY 166 (407)
Q Consensus 94 ~~~~~~i~~ll~~L~-~~~----~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~-~~~~~~~a~~~L~ 166 (407)
-+|.+.++..++.+- ... ..-..|+..+..+...+|..-..+.++|.++.+++.+. .+-. +.++....-.+|.
T Consensus 101 l~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~ 180 (379)
T PF06025_consen 101 LIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLS 180 (379)
T ss_pred ccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHh
Confidence 355456666665553 221 44456888999999988999999999999999999998 4433 2334445555778
Q ss_pred hcCCChhHHHhHhhccchhhHHHHHHHHhcCCh-------hHHHHHHHHHHHhhccCCchhh
Q 040073 167 HLNVSESYLKSIVINNGEEFLESLMRVLKCGNY-------QSRSYAIMLLKSIFEVADPFQL 221 (407)
Q Consensus 167 ~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~-------~~~~~a~~~L~~Ls~~~~~~~~ 221 (407)
.+|.++...+.+. +.+ +++.+++++.+.+. +.-...-..+-.|..+.+.-+.
T Consensus 181 AicLN~~Gl~~~~-~~~--~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~ 239 (379)
T PF06025_consen 181 AICLNNRGLEKVK-SSN--PLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKP 239 (379)
T ss_pred HHhcCHHHHHHHH-hcC--hHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHH
Confidence 8899987765554 444 89999999876321 2222333345556666554433
No 252
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.00 E-value=18 Score=38.19 Aligned_cols=146 Identities=15% Similarity=0.150 Sum_probs=81.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+--++.+|++.+.+++.++..+...|....+.-. ++.. .=+.++.--..+..-+.+-++.-..+|...+..-+.
T Consensus 318 l~mDvLrvLss~dldvr~Ktldi~ldLvssrNved-iv~~--Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~-- 392 (948)
T KOG1058|consen 318 LIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVED-IVQF--LKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE-- 392 (948)
T ss_pred HHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHH-HHHH--HHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--
Confidence 45566678888899999999998888875543211 1100 001111111111001345677778899988874332
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh-cCHhhHHHHHhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhc
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC-RCAEGRAELLKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCK 343 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~-~~~~~r~~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~ 343 (407)
+.+.+|+.|++.+.+. ++......+..+...- ..+.-|..++. .|+..+-. .+.+.-+.|++++...|.
T Consensus 393 --~aatvV~~ll~fisD~-N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~~~~~~irS~ki~rgalwi~GeYce 463 (948)
T KOG1058|consen 393 --VAATVVSLLLDFISDS-NEAAASDVLMFVREAIEKFPNLRASIIE------KLLETFPQIRSSKICRGALWILGEYCE 463 (948)
T ss_pred --HHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhCchHHHHHHH------HHHHhhhhhcccccchhHHHHHHHHHh
Confidence 3446799999999886 4444334444443322 23444544443 33332222 256777778888888886
Q ss_pred cC
Q 040073 344 FS 345 (407)
Q Consensus 344 ~~ 345 (407)
..
T Consensus 464 ~~ 465 (948)
T KOG1058|consen 464 GL 465 (948)
T ss_pred hh
Confidence 43
No 253
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=89.97 E-value=2.3 Score=35.26 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=64.3
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA 389 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~ 389 (407)
++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+.+.+..|+.++.. .....+|++...+++.-+..
T Consensus 39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~-~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (139)
T cd03567 39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGE-RFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLE 117 (139)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 456777778777889999999999999988765 478888888999999999953 25789999999999887776
Q ss_pred ccCCCC
Q 040073 390 WRDSPC 395 (407)
Q Consensus 390 ~~~~~~ 395 (407)
+.+.|-
T Consensus 118 f~~~p~ 123 (139)
T cd03567 118 LPHEPK 123 (139)
T ss_pred hcccch
Confidence 654443
No 254
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.74 E-value=26 Score=36.90 Aligned_cols=131 Identities=16% Similarity=0.187 Sum_probs=78.2
Q ss_pred cHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHH
Q 040073 66 NHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFL 144 (407)
Q Consensus 66 n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~L 144 (407)
|..+|+++-.+...... .+|......+..++....+++ ..|.-|++.+..+-.+ ..... ...+|
T Consensus 62 dlelKKlvyLYl~nYa~--------~~P~~a~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey-----~~~Pl 126 (734)
T KOG1061|consen 62 DLELKKLVYLYLMNYAK--------GKPDLAILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEY-----LCDPL 126 (734)
T ss_pred CchHHHHHHHHHHHhhc--------cCchHHHhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHH-----HHHHH
Confidence 45567776666554431 112122233445555555555 5566666655554322 11111 25677
Q ss_pred HHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 145 ATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 145 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
.+.+++.++ .++..|+-....+= + ...+.....| .++.|.+++...++.+..+|..+|..+...+.+
T Consensus 127 ~~~l~d~~~--yvRktaa~~vakl~--~-~~~~~~~~~g--l~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~ 193 (734)
T KOG1061|consen 127 LKCLKDDDP--YVRKTAAVCVAKLF--D-IDPDLVEDSG--LVDALKDLLSDSNPMVVANALAALSEIHESHPS 193 (734)
T ss_pred HHhccCCCh--hHHHHHHHHHHHhh--c-CChhhccccc--hhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCC
Confidence 777777766 33554444443332 2 2345666665 999999999988999999999999999766543
No 255
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.62 E-value=0.28 Score=46.35 Aligned_cols=66 Identities=20% Similarity=0.223 Sum_probs=47.6
Q ss_pred ccCccccccCc------CceecCCcccccHHHHHHHHhcCCCCCCccccccc--cccCCCCCCccHHHHHHHHHH
Q 040073 10 FLCPISLQLMR------DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL--QETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 10 ~~Cpi~~~~~~------dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~--~~~~~~~l~~n~~l~~~I~~~ 76 (407)
+.|=||.+.|. -|-.+.||||+|..|+.+.+.. +...||.|+.+. ....+..+..|+.+-..++..
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~-~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~ 77 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN-SRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM 77 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcC-ceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence 45777776654 4667889999999999998865 367789999883 221122566788887777765
No 256
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=89.61 E-value=18 Score=40.19 Aligned_cols=271 Identities=15% Similarity=0.148 Sum_probs=144.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcC-C---ChhHHH
Q 040073 102 KILNDAKKSPSTGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLN-V---SESYLK 176 (407)
Q Consensus 102 ~ll~~L~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~-~---~~~~~~ 176 (407)
.-++.|+.. +.+.+|++-|+.++.. +++++-. -++|-++.++.+... +|+..|+.+|..+- . -.....
T Consensus 429 s~IR~lk~~-~tK~~ALeLl~~lS~~i~de~~LD----RVlPY~v~l~~Ds~a--~Vra~Al~Tlt~~L~~Vr~~~~~da 501 (1431)
T KOG1240|consen 429 SCIRALKTI-QTKLAALELLQELSTYIDDEVKLD----RVLPYFVHLLMDSEA--DVRATALETLTELLALVRDIPPSDA 501 (1431)
T ss_pred HHHHhhhcc-hhHHHHHHHHHHHhhhcchHHHHh----hhHHHHHHHhcCchH--HHHHHHHHHHHHHHhhccCCCcccc
Confidence 334444544 7789999999999865 3343322 258999999998776 56888888777532 2 112234
Q ss_pred hHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccC------------------Cchhhh--h-------chhhh
Q 040073 177 SIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVA------------------DPFQLI--S-------VKQEF 228 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~------------------~~~~~i--~-------~~~g~ 228 (407)
.++.+. .+|.|-.++.. ....+|..-+..|..|+... .+.... . .-...
T Consensus 502 niF~eY---lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 502 NIFPEY---LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred hhhHhh---hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 555543 68888888876 45555555555555554221 111000 0 00011
Q ss_pred HHHHH-HHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC----chHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 229 FTEIV-NVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG----GVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 229 i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G----~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
|..+| .+|.+. ++-+++.-+..|.-||.. +.+++ .++-|+..|.+. |..++..-..-+.-++..-
T Consensus 579 V~~~v~sLlsd~---~~~Vkr~Lle~i~~LC~F------FGk~ksND~iLshLiTfLNDk-Dw~LR~aFfdsI~gvsi~V 648 (1431)
T KOG1240|consen 579 VEQMVSSLLSDS---PPIVKRALLESIIPLCVF------FGKEKSNDVILSHLITFLNDK-DWRLRGAFFDSIVGVSIFV 648 (1431)
T ss_pred HHHHHHHHHcCC---chHHHHHHHHHHHHHHHH------hhhcccccchHHHHHHHhcCc-cHHHHHHHHhhccceEEEE
Confidence 22222 233333 344444445555555531 11111 344555555554 4444333333333222211
Q ss_pred hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
|.+. ++ ...+|.|.+-|.+..+.+-..|+.+|..|+...- .++. .-...++-..-+|- +++.=.|+.+..++
T Consensus 649 -G~rs-~s-eyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~-~v~~i~~~v~PlL~-hPN~WIR~~~~~iI 720 (1431)
T KOG1240|consen 649 -GWRS-VS-EYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKP-AVKDILQDVLPLLC-HPNLWIRRAVLGII 720 (1431)
T ss_pred -eeee-HH-HHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchH-HHHHHHHhhhhhee-CchHHHHHHHHHHH
Confidence 1211 22 3456777777766667888999999999987432 1111 11123333333343 56888999998888
Q ss_pred HHHHhhccCC--CCCCccc
Q 040073 384 KLNARAWRDS--PCVPAHL 400 (407)
Q Consensus 384 ~~l~~~~~~~--~~~~~~~ 400 (407)
....+.+..- -|+-+-+
T Consensus 721 ~~~~~~ls~advyc~l~P~ 739 (1431)
T KOG1240|consen 721 AAIARQLSAADVYCKLMPL 739 (1431)
T ss_pred HHHHhhhhhhhheEEeehh
Confidence 7777765432 3654444
No 257
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=89.47 E-value=8.3 Score=39.24 Aligned_cols=153 Identities=12% Similarity=0.036 Sum_probs=93.7
Q ss_pred CcHHHHHHHhhccCC---CC--chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073 139 GAIEFLATIITKSDA---GS--DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF 213 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~---~~--~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 213 (407)
.++|.|+++|.+.+. +. .+--.|...|...+. ..+..+... ++..+-.-+++++..-|+.|+.++.++.
T Consensus 321 dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq---~~gd~i~~p---Vl~FvEqni~~~~w~nreaavmAfGSvm 394 (858)
T COG5215 321 DVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ---LKGDKIMRP---VLGFVEQNIRSESWANREAAVMAFGSVM 394 (858)
T ss_pred HHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH---HhhhHhHHH---HHHHHHHhccCchhhhHHHHHHHhhhhh
Confidence 478999999986322 00 012334444444332 223334332 4555566677889999999999999987
Q ss_pred ccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc--cchhHHHH
Q 040073 214 EVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV--TERRVCEL 291 (407)
Q Consensus 214 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~ 291 (407)
..+......-.-..++|.+..++.+. .--++..++|++..++.+-. ..+-..|-++..++...-| +.+....+
T Consensus 395 ~gp~~~~lT~~V~qalp~i~n~m~D~---~l~vk~ttAwc~g~iad~va--~~i~p~~Hl~~~vsa~liGl~D~p~~~~n 469 (858)
T COG5215 395 HGPCEDCLTKIVPQALPGIENEMSDS---CLWVKSTTAWCFGAIADHVA--MIISPCGHLVLEVSASLIGLMDCPFRSIN 469 (858)
T ss_pred cCccHHHHHhhHHhhhHHHHHhcccc---eeehhhHHHHHHHHHHHHHH--HhcCccccccHHHHHHHhhhhccchHHhh
Confidence 65543222111135788888888766 77888999999999975321 1222245555544433322 14567778
Q ss_pred HHHHHHHHhcC
Q 040073 292 MLNVLDLLCRC 302 (407)
Q Consensus 292 al~~L~~L~~~ 302 (407)
+.+...+|..+
T Consensus 470 csw~~~nlv~h 480 (858)
T COG5215 470 CSWRKENLVDH 480 (858)
T ss_pred hHHHHHhHHHh
Confidence 88888888764
No 258
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.45 E-value=23 Score=35.17 Aligned_cols=187 Identities=15% Similarity=0.135 Sum_probs=112.3
Q ss_pred hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc-ccC-CCCCHHHHHHHHHHHHHhCC-CC
Q 040073 186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL-RDH-HQFSQQASKAALKLLVELCP-WG 261 (407)
Q Consensus 186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~-~~~~~~~~~~A~~aL~~L~~-~~ 261 (407)
.+..++.+..+ .+...+..++.++..|...-.... .-..++..+...+ ... +...+...+..+|....|.. ++
T Consensus 190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~ 266 (415)
T PF12460_consen 190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD---DLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH 266 (415)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh---hHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence 45566655544 456777777888877764411111 1123444454444 111 00134455555566565554 22
Q ss_pred chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-Hhh-------------HHHHHhccCchHHHHHHHHcCC
Q 040073 262 RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEG-------------RAELLKHGAGLAVVSKKILRVS 327 (407)
Q Consensus 262 ~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~-------------r~~i~~~~g~i~~Lv~~l~~~s 327 (407)
+.-. ..+..|+++|.+ +++...++..+..|... ++. |+++... .+|.|++.....+
T Consensus 267 ~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~--~~p~L~~~~~~~~ 336 (415)
T PF12460_consen 267 PLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ--VLPKLLEGFKEAD 336 (415)
T ss_pred chHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH--HHHHHHHHHhhcC
Confidence 2111 246667887765 45667777777777665 322 5555552 5788888776666
Q ss_pred chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
...+.+.+.+|..+-.+-+..-...++- ..+|-|+.-|..+ +...+..+-.+|+.+-+
T Consensus 337 ~~~k~~yL~ALs~ll~~vP~~vl~~~l~--~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 337 DEIKSNYLTALSHLLKNVPKSVLLPELP--TLLPLLLQSLSLP-DADVLLSSLETLKMILE 394 (415)
T ss_pred hhhHHHHHHHHHHHHhhCCHHHHHHHHH--HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence 6688999999999999877543333322 3778888888654 67788888777776655
No 259
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.12 E-value=23 Score=36.34 Aligned_cols=99 Identities=21% Similarity=0.245 Sum_probs=66.8
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHH
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVL 351 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~ 351 (407)
.+..++.-+.+. +..++..++.+|+.+..+-..-...+. .+.+..|.+.+.+..+.++..|+.+|..+-....+++..
T Consensus 92 ~~~h~lRg~esk-dk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~ 169 (885)
T COG5218 92 TFYHLLRGTESK-DKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENR 169 (885)
T ss_pred HHHHHHhcccCc-chhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHH
Confidence 333344333343 778999999999999875433334444 355666666666666778888999998877665554333
Q ss_pred HHHHHhChHHHHHHHHhcCCCHHHHHHH
Q 040073 352 QEMLQVGVVSKLCLVLQVDASVKTKERA 379 (407)
Q Consensus 352 ~~~~~~g~i~~Ll~ll~~~~~~~~k~~A 379 (407)
....|+.++|.+++.++|+.|
T Consensus 170 -------~~n~l~~~vqnDPS~EVRr~a 190 (885)
T COG5218 170 -------IVNLLKDIVQNDPSDEVRRLA 190 (885)
T ss_pred -------HHHHHHHHHhcCcHHHHHHHH
Confidence 234677888988899988876
No 260
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=88.83 E-value=2.4 Score=44.36 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHH
Q 040073 113 TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR 192 (407)
Q Consensus 113 ~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~ 192 (407)
.-.+++.++++|+..+..-|..+.+.-+++.+-.++..... ..+..++..+.||..++.-..+.+.+.. .-++....
T Consensus 558 en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~--~lqraa~e~~~NLl~~~~~~e~si~e~~-~~l~~w~~ 634 (748)
T KOG4151|consen 558 ENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENP--ALQRAALESIINLLWSPLLYERSIVEYK-DRLKLWNL 634 (748)
T ss_pred HHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccH--HHHHHHHHHHHHHHhhHHHHHHHhhccc-cCchHHHH
Confidence 34678999999998888888888876555554444443433 3478888899999888876677777632 13777666
Q ss_pred HHhcCChhHHHHHHHHHHHhhccCCchhh-hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 193 VLKCGNYQSRSYAIMLLKSIFEVADPFQL-ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 193 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
.+..........++.++..++...++... +.........++.++.++ +.+++...+....|+.
T Consensus 635 ~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~---~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 635 NLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE---DDEIQHRGLVIILNLF 698 (748)
T ss_pred HHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc---hhhhhhhhhhhhhhHH
Confidence 66665555666777777766666665544 433334578889999998 9999999998888854
No 261
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=88.63 E-value=1.1 Score=40.50 Aligned_cols=82 Identities=18% Similarity=0.351 Sum_probs=61.7
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccch-----hhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch-hhhhchhhhH
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGE-----EFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFF 229 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg-----~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i 229 (407)
-+..|+.+|.-|+..+. |.+++..-+. +.+..|+++|.. ++.-.|+-|+.+|.+|+..++.. +.+..+.+.|
T Consensus 140 PqrlaLEaLcKLsV~e~-NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i 218 (257)
T PF12031_consen 140 PQRLALEALCKLSVIEN-NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI 218 (257)
T ss_pred HHHHHHHHHHHhheecc-CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence 38999999999998764 5666655431 234455555543 68889999999999999887754 3566667899
Q ss_pred HHHHHHcccC
Q 040073 230 TEIVNVLRDH 239 (407)
Q Consensus 230 ~~Lv~lL~~~ 239 (407)
..|+.++.+.
T Consensus 219 ~~Li~FiE~a 228 (257)
T PF12031_consen 219 SHLIAFIEDA 228 (257)
T ss_pred HHHHHHHHHH
Confidence 9999999865
No 262
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=88.09 E-value=0.65 Score=38.84 Aligned_cols=49 Identities=20% Similarity=0.271 Sum_probs=36.4
Q ss_pred CcccCccccccCcCceecCCcc-----cccHHHHHHHHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+-.|=||.+--. +..-||.. -.=++|+++|...+++..||.|++++.-
T Consensus 7 ~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 7 MDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 3457899987753 44456543 2468999999998778899999998743
No 263
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=88.03 E-value=39 Score=36.27 Aligned_cols=186 Identities=16% Similarity=0.078 Sum_probs=109.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+|.+...++...++++.+....+..+-...+.-..-......++.++.+-.+. ...++.+....+..++.... .
T Consensus 438 llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~---~wRvr~ail~~ip~la~q~~--~ 512 (759)
T KOG0211|consen 438 LLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL---LWRVRLAILEYIPQLALQLG--V 512 (759)
T ss_pred cChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch---hHHHHHHHHHHHHHHHHhhh--h
Confidence 467777788888899999988877665433332222222345688888888776 78888888888888876433 2
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhHHHHHHHHHHh
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASDRAVRILCSVC 342 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e~a~~~L~~l~ 342 (407)
.+.+.-..+.+..-|.+. ...+++.|+..|..++..-...... . --++.++.+..+.+ ....-.++..|..+.
T Consensus 513 ~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~~w~~-~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~ 588 (759)
T KOG0211|consen 513 EFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGSEWAR-L--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL 588 (759)
T ss_pred HHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCcchhH-H--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh
Confidence 333322222222223222 3467788888888777622211111 1 13566666455432 334445555555555
Q ss_pred ccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 343 KFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 343 ~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+ + ++.....++.+..+.. +..+.+|-++++.|..+.+.
T Consensus 589 g---~-----ei~~~~Llp~~~~l~~-D~vanVR~nvak~L~~i~~~ 626 (759)
T KOG0211|consen 589 G---Q-----EITCEDLLPVFLDLVK-DPVANVRINVAKHLPKILKL 626 (759)
T ss_pred c---c-----HHHHHHHhHHHHHhcc-CCchhhhhhHHHHHHHHHhh
Confidence 3 3 2222346666666554 67888888888888777653
No 264
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=87.35 E-value=6.9 Score=38.94 Aligned_cols=159 Identities=10% Similarity=0.040 Sum_probs=88.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccC----Cch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVA----DPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~----~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
+...+...|.+.....|+++++++.+++..- .+. ......+-.+..++..-...+..+..++.+|.++|.|+.+
T Consensus 434 aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQ 513 (728)
T KOG4535|consen 434 AANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQ 513 (728)
T ss_pred HHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHH
Confidence 4555666666667888999999999997421 110 1111111234444433221111267899999999999986
Q ss_pred CCc----hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcC-CchhhHH
Q 040073 260 WGR----NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRV-SHAASDR 333 (407)
Q Consensus 260 ~~~----n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~-s~~~~e~ 333 (407)
.-+ -.......|.+..++.-........++-+++-++.||-.++.-+-+-..-+ ...+.|..++.+. +=+.+-+
T Consensus 514 vlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~ 593 (728)
T KOG4535|consen 514 FLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR 593 (728)
T ss_pred HHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence 321 111112223333333222111256889999999999998876532221112 2345666655443 3466777
Q ss_pred HHHHHHHHhcc
Q 040073 334 AVRILCSVCKF 344 (407)
Q Consensus 334 a~~~L~~l~~~ 344 (407)
|+++|......
T Consensus 594 AA~aL~vp~~r 604 (728)
T KOG4535|consen 594 AAAALSVPGKR 604 (728)
T ss_pred hhhhhcCCCCc
Confidence 88887766654
No 265
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=87.35 E-value=7.3 Score=36.06 Aligned_cols=158 Identities=18% Similarity=0.131 Sum_probs=93.7
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcC--cHHHHHHHhhccCC--CCchHHHHHHHHHhcCCChhHHHhHhhccch-hh
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAG--AIEFLATIITKSDA--GSDECDEALSILYHLNVSESYLKSIVINNGE-EF 186 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G--~i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg-~~ 186 (407)
+.+.-++.-+|.++.+ +..-..+...+ ....+..++..... ....+--+++++.|+-.+.... ..+....+ ..
T Consensus 78 ~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i 155 (268)
T PF08324_consen 78 ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSI 155 (268)
T ss_dssp CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCH
T ss_pred ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchH
Confidence 6678888888888775 55555555533 35666666655542 2234677888999988776544 44443220 02
Q ss_pred HHHHHHHHhcC---ChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCC
Q 040073 187 LESLMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 187 i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
++.+.....+. +..++..++.++.|++..--... ..-.....+..+++.+. .. .++++.-.++.||.+|...+
T Consensus 156 ~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~--~d~Ea~~R~LvAlGtL~~~~ 233 (268)
T PF08324_consen 156 LELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREE--SDEEALYRLLVALGTLLSSS 233 (268)
T ss_dssp HHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCH--TSHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcccc--CCHHHHHHHHHHHHHHhccC
Confidence 22222222222 67888999999999974321111 00011134666666433 22 28999999999999999877
Q ss_pred chHHHHHh-cCch
Q 040073 262 RNRIKAVE-GGGV 273 (407)
Q Consensus 262 ~n~~~~v~-~G~v 273 (407)
+....+.+ .|+-
T Consensus 234 ~~~~~~~~~l~~~ 246 (268)
T PF08324_consen 234 DSAKQLAKSLDVK 246 (268)
T ss_dssp HHHHHHCCCCTHH
T ss_pred hhHHHHHHHcChH
Confidence 77766666 3433
No 266
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.34 E-value=19 Score=39.81 Aligned_cols=174 Identities=14% Similarity=0.150 Sum_probs=97.6
Q ss_pred hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh----hHHHhHhhccchhh
Q 040073 112 STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE----SYLKSIVINNGEEF 186 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~----~~~~~~i~~~gg~~ 186 (407)
..+...+.+|..+-+..+ ++...+.+ .|+-++=+++..+. ..+..|...|..++... +.+.. .. ..
T Consensus 712 ~~~~~rl~~L~~L~~~~~~e~~~~i~k--~I~EvIL~~Ke~n~--~aR~~Af~lL~~i~~i~~~~d~g~e~--~~---~~ 782 (1176)
T KOG1248|consen 712 PAQASRLKCLKRLLKLLSAEHCDLIPK--LIPEVILSLKEVNV--KARRNAFALLVFIGAIQSSLDDGNEP--AS---AI 782 (1176)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHH--HHHHHHHhcccccH--HHHhhHHHHHHHHHHHHhhhcccccc--hH---HH
Confidence 667777777777766544 33333322 23333333343333 34888888888776211 11111 01 14
Q ss_pred HHHHHHHHhcC--ChhHHHHHHH--HHHHhhccCCchhhhhch---hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 187 LESLMRVLKCG--NYQSRSYAIM--LLKSIFEVADPFQLISVK---QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 187 i~~Lv~lL~~~--~~~~~~~a~~--~L~~Ls~~~~~~~~i~~~---~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
+..++..+.-| ....+..+.. ++..+.....+ +... .+.+..+...|.+. ++++++.|...+..++.
T Consensus 783 lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~---~ld~~~l~~li~~V~~~L~s~---sreI~kaAI~fikvlv~ 856 (1176)
T KOG1248|consen 783 LNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKN---ILDDETLEKLISMVCLYLASN---SREIAKAAIGFIKVLVY 856 (1176)
T ss_pred HHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhc---cccHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 55666666554 3344433333 33333322111 2111 23444445556677 99999999999999887
Q ss_pred C-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 260 W-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 260 ~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
. ++-...--..-.+|.+..++.+. ...++.+.-..|..|..
T Consensus 857 ~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 857 KFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred cCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHH
Confidence 4 34443333344788888888776 67788888888888875
No 267
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=87.14 E-value=1.8 Score=39.02 Aligned_cols=82 Identities=18% Similarity=0.094 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHhcC-------chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH-HHHhccCc
Q 040073 244 QQASKAALKLLVELCPWGRNRIKAVEGG-------GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA-ELLKHGAG 315 (407)
Q Consensus 244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~G-------~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~-~i~~~~g~ 315 (407)
-.-++-|+.+|..|+..+.|...+..-+ .+..|+++|....+.-.+|-|+.+|.+|+..++.-. .+....+.
T Consensus 138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~ 217 (257)
T PF12031_consen 138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC 217 (257)
T ss_pred CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence 3568999999999999988877666544 344455555554467889999999999999776543 44444678
Q ss_pred hHHHHHHHHc
Q 040073 316 LAVVSKKILR 325 (407)
Q Consensus 316 i~~Lv~~l~~ 325 (407)
|..|+.++-+
T Consensus 218 i~~Li~FiE~ 227 (257)
T PF12031_consen 218 ISHLIAFIED 227 (257)
T ss_pred HHHHHHHHHH
Confidence 9999998754
No 268
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=86.79 E-value=45 Score=35.11 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=72.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+..+++-..+.+..+|-+.+.+|..++......... ...+....|...+.+. -+.++..|..+|..+-..+.+-
T Consensus 86 ~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~-vfn~l~e~l~~Rl~Dr---ep~VRiqAv~aLsrlQ~d~~de- 160 (892)
T KOG2025|consen 86 TFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDD-VFNKLNEKLLIRLKDR---EPNVRIQAVLALSRLQGDPKDE- 160 (892)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHH-HHHHHHHHHHHHHhcc---CchHHHHHHHHHHHHhcCCCCC-
Confidence 6778888888889999999999999997522221112 2246777777777777 7899999999999997532221
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNV 295 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~ 295 (407)
+..++..++.++..+++++++..|+.-
T Consensus 161 ---e~~v~n~l~~liqnDpS~EVRRaaLsn 187 (892)
T KOG2025|consen 161 ---ECPVVNLLKDLIQNDPSDEVRRAALSN 187 (892)
T ss_pred ---cccHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 123567788888887778887766543
No 269
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=86.72 E-value=0.59 Score=43.97 Aligned_cols=63 Identities=13% Similarity=0.235 Sum_probs=47.0
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
..+-+-||||.+.|.-|+-= .-||..|-+|=.+ ....||.|+.++.+ +.++++.+.++.-+..
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~-----~~~~CP~Cr~~~g~------~R~~amEkV~e~~~vp 108 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK-----VSNKCPTCRLPIGN------IRCRAMEKVAEAVLVP 108 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhh-----hcccCCcccccccc------HHHHHHHHHHHhceec
Confidence 45568999999999999644 3699999998332 26789999988863 2467788887776443
No 270
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=86.68 E-value=27 Score=39.76 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCch--HHHHHhcCchHHHHHH
Q 040073 202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRN--RIKAVEGGGVSVLVDL 279 (407)
Q Consensus 202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n--~~~~v~~G~v~~Lv~l 279 (407)
..+|..+...|+...+.... ..+.+..++..|... ...++..|+++|.++...++. ....|..|+. +-
T Consensus 794 ~~~a~li~~~la~~r~f~~s---fD~yLk~Il~~l~e~---~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh----~R 863 (1692)
T KOG1020|consen 794 DDDAKLIVFYLAHARSFSQS---FDPYLKLILSVLGEN---AIALRTKALKCLSMIVEADPSVLSRPDVQEAVH----GR 863 (1692)
T ss_pred chhHHHHHHHHHhhhHHHHh---hHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHH----Hh
Confidence 35677777777655543322 246788888999876 889999999999999886652 2223444333 33
Q ss_pred hhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 280 LLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 280 L~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
+.+. +..+++.|+..+..-.. .++.-.+.. ..+..-+++.+-.++++++++|..+|...++
T Consensus 864 ~~Ds-sasVREAaldLvGrfvl~~~e~~~qyY------~~i~erIlDtgvsVRKRvIKIlrdic~e~pd 925 (1692)
T KOG1020|consen 864 LNDS-SASVREAALDLVGRFVLSIPELIFQYY------DQIIERILDTGVSVRKRVIKILRDICEETPD 925 (1692)
T ss_pred hccc-hhHHHHHHHHHHhhhhhccHHHHHHHH------HHHHhhcCCCchhHHHHHHHHHHHHHHhCCC
Confidence 4343 67899999999884433 343322222 2455667777888999999999999987776
No 271
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.33 E-value=14 Score=39.78 Aligned_cols=182 Identities=16% Similarity=0.160 Sum_probs=109.0
Q ss_pred HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-HHhHhh
Q 040073 103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-LKSIVI 180 (407)
Q Consensus 103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~i~ 180 (407)
+...+.+++ ..+.+|++.+.....+.. ........|.+-.+++....+.. ..+.-.|+..|..++..-.. .+.+..
T Consensus 258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN-~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDAN-INVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcc-hhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 334455665 899999999999877632 11111113334444444443333 22466666667666643321 223322
Q ss_pred ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-
Q 040073 181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP- 259 (407)
Q Consensus 181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~- 259 (407)
.+.+.|...+.......++.+..++...+.. ......++....+++++ ++..+......+-....
T Consensus 336 ----~v~p~lld~lkekk~~l~d~l~~~~d~~~ns-------~~l~~~~~~I~e~lk~k---np~~k~~~~~~l~r~~~~ 401 (815)
T KOG1820|consen 336 ----NVFPSLLDRLKEKKSELRDALLKALDAILNS-------TPLSKMSEAILEALKGK---NPQIKGECLLLLDRKLRK 401 (815)
T ss_pred ----hhcchHHHHhhhccHHHHHHHHHHHHHHHhc-------ccHHHHHHHHHHHhcCC---ChhhHHHHHHHHHHHHhh
Confidence 1688888999887888888888887776541 11124577788899988 88887775555544333
Q ss_pred CC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 260 WG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 260 ~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.+ .+...-.-.+.+|.++....+. +.+++..|..++..+-.
T Consensus 402 ~~~~~~~~~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 402 LGPKTVEKETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCCcCcchhhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHH
Confidence 22 1211112235677777777665 78888888887776654
No 272
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=86.25 E-value=54 Score=35.51 Aligned_cols=245 Identities=15% Similarity=0.151 Sum_probs=140.7
Q ss_pred HHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh----cCC----hhH
Q 040073 133 SCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK----CGN----YQS 201 (407)
Q Consensus 133 ~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~----~~~----~~~ 201 (407)
..+.+.|++..|+.+|.+-.+ +.......+.+|...+.-.. +++.+.+.+ +++.|+..|. .++ .++
T Consensus 111 ~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~-NR~~Ll~~~--al~~LL~~L~~~l~~~~~~~~~~i 187 (802)
T PF13764_consen 111 SVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKV-NRRALLELN--ALNRLLSVLNRALQANQNSSQAEI 187 (802)
T ss_pred HHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHH-HHHHHHHcC--CHHHHHHHHHHHHhCccccccchH
Confidence 345678999999999986443 23345556666666666654 555555566 6999988875 333 566
Q ss_pred HHHHHHHHHHhhccCCchhh-h-------h----chhhhHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCCchHHH-H
Q 040073 202 RSYAIMLLKSIFEVADPFQL-I-------S----VKQEFFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWGRNRIK-A 267 (407)
Q Consensus 202 ~~~a~~~L~~Ls~~~~~~~~-i-------~----~~~g~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~~n~~~-~ 267 (407)
-+....++..|......... . . ....-+..|++.+.+.. ..++.+....++.|-+|+-.+..+.. +
T Consensus 188 ~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~L 267 (802)
T PF13764_consen 188 AEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDAL 267 (802)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHH
Confidence 67777777776543321111 0 0 01224677777776431 12678888889999999987665443 3
Q ss_pred HhcCchHHHHHHhhcc-----cchhH-HHHHHHHHHHHhcCH---hhHHHHHhccCchHHHHHHHHcCCc----------
Q 040073 268 VEGGGVSVLVDLLLDV-----TERRV-CELMLNVLDLLCRCA---EGRAELLKHGAGLAVVSKKILRVSH---------- 328 (407)
Q Consensus 268 v~~G~v~~Lv~lL~~~-----~~~~~-~~~al~~L~~L~~~~---~~r~~i~~~~g~i~~Lv~~l~~~s~---------- 328 (407)
++. +.+.++ +..- .+..+ .+.-+.+...+-.+. .-|..+++ .|.+...+..|...-+
T Consensus 268 v~~--F~p~l~-f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~-~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 268 VEH--FKPYLD-FDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILE-SGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred HHH--HHHhcC-hhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHH-hhHHHHHHHHHHHhCcccccCCCHHH
Confidence 332 233222 1111 01112 222333333443333 34667776 5778888888876422
Q ss_pred ------hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh-cCCCHHHHHHHHHHHHHHHh
Q 040073 329 ------AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ-VDASVKTKERAREILKLNAR 388 (407)
Q Consensus 329 ------~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~k~~A~~lL~~l~~ 388 (407)
..-..++..|.-++.+.. ..+.++..++| +++.-|. ...+.+.=..|-.+|..|+.
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~---~tQ~~~~~~~l-~~lH~LEqvss~~~IGslAEnlLeal~~ 406 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHE---PTQLLIAEQLL-PLLHRLEQVSSEEHIGSLAENLLEALAE 406 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCH---HHHHHHHhhHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence 234567888888887543 34455666777 4445454 23345555566666666654
No 273
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=86.23 E-value=33 Score=32.98 Aligned_cols=158 Identities=12% Similarity=0.155 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhh-hChhHHHHHHh-cC-cHHHHHHHhhccCC---C--------CchHHHHHH-
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITL-QSERNRSCLEA-AG-AIEFLATIITKSDA---G--------SDECDEALS- 163 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~-~~~~~r~~i~~-~G-~i~~Lv~lL~~~~~---~--------~~~~~~a~~- 163 (407)
+..+-+.|.+.. ..+..+++-|..++. ++......+.. -+ -.+.|.+++..... . ..++...+.
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 445555666655 566788888888887 65555444444 33 46778888854321 0 045777777
Q ss_pred HHHhcCCChhHHH-hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHH-hhccCC----chhhhhchhhhHHHHHHHcc
Q 040073 164 ILYHLNVSESYLK-SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKS-IFEVAD----PFQLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 164 ~L~~L~~~~~~~~-~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~g~i~~Lv~lL~ 237 (407)
+|..+...+...+ +++...+ .+..+.+-|..++.++......+|.. +..+.. .+..+.. ..++..|+.+..
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~--~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKK--LMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASLYS 214 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCc--hHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHHhc
Confidence 4445555555454 5554443 78888888988899999888888884 544432 2233444 358899999887
Q ss_pred cCCCCCH----HHHHHHHHHHHHhCCCCch
Q 040073 238 DHHQFSQ----QASKAALKLLVELCPWGRN 263 (407)
Q Consensus 238 ~~~~~~~----~~~~~A~~aL~~L~~~~~n 263 (407)
.. ++ .+.+.+-..|..+|.++.+
T Consensus 215 ~~---~~~~~~~~~~~vh~fL~~lcT~p~~ 241 (330)
T PF11707_consen 215 RD---GEDEKSSVADLVHEFLLALCTDPKH 241 (330)
T ss_pred cc---CCcccchHHHHHHHHHHHHhcCCCc
Confidence 65 44 7888889999999976653
No 274
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.22 E-value=28 Score=37.64 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=107.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHH
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKA 267 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~ 267 (407)
+.+-.-+.+.++.-|..|+.-+........ ....-...|.+..++.....+ .+..+...|+..|-.++..-..-..=
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kD--aN~~v~~~aa~~l~~ia~~lr~~~~~ 332 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKD--ANINVVMLAAQILELIAKKLRPLFRK 332 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccC--cchhHHHHHHHHHHHHHHhcchhhHH
Confidence 344445556777777777777766554433 222222335556666655433 37788888888888887632211222
Q ss_pred HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 268 VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 268 v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
.-.+.+|.++.-+.+. ...+++.++.++...+.... . ...++.++..+.+.++..+..+...+.........
T Consensus 333 ~~~~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~-----l--~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 333 YAKNVFPSLLDRLKEK-KSELRDALLKALDAILNSTP-----L--SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred HHHhhcchHHHHhhhc-cHHHHHHHHHHHHHHHhccc-----H--HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 2336789999988886 67888888888887776221 1 12344555555566677777766666655544331
Q ss_pred hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 348 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
..+....+ .+.++.++.... ++...+|..|.+.+-.+-+
T Consensus 405 ~~~~~~t~-~~l~p~~~~~~~-D~~~~VR~Aa~e~~~~v~k 443 (815)
T KOG1820|consen 405 KTVEKETV-KTLVPHLIKHIN-DTDKDVRKAALEAVAAVMK 443 (815)
T ss_pred cCcchhhH-HHHhHHHhhhcc-CCcHHHHHHHHHHHHHHHH
Confidence 11111111 244555554443 5667777777665544433
No 275
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=86.07 E-value=26 Score=33.05 Aligned_cols=170 Identities=15% Similarity=0.096 Sum_probs=101.8
Q ss_pred hHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--
Q 040073 186 FLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-- 262 (407)
Q Consensus 186 ~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-- 262 (407)
.+..|+ -.+++.+..+|+.|..+|+-++-.+.. ... ..++.+...++.+ +.+++..|+.+|..+.....
T Consensus 27 ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~---~a~--~~l~l~~~~~~~~---~~~v~~~al~~l~Dll~~~g~~ 98 (298)
T PF12719_consen 27 LLDSLILPAVQSSDPAVRELALKCLGLCCLLDKE---LAK--EHLPLFLQALQKD---DEEVKITALKALFDLLLTHGID 98 (298)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH---HHH--HHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCch
Confidence 454444 667788999999999999998876652 322 3578888888777 89999999999999876332
Q ss_pred hHHH-------HHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhH
Q 040073 263 NRIK-------AVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASD 332 (407)
Q Consensus 263 n~~~-------~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e 332 (407)
.-.. .-....+..+.+.|.+. +++++..|+.-+..|--++.... ....+..|+-.-.+.. ...-.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr 173 (298)
T PF12719_consen 99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR 173 (298)
T ss_pred hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence 1111 11234566677777776 77888888888887766443221 0122233333233221 11223
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
.++...--....+.. ..++.+..+.++.+..+....
T Consensus 174 Q~L~~Ffp~y~~s~~--~~Q~~l~~~f~~~l~~~~~~~ 209 (298)
T PF12719_consen 174 QCLSVFFPVYASSSP--ENQERLAEAFLPTLRTLSNAP 209 (298)
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHHhCc
Confidence 334433333332221 245566667777777766654
No 276
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.66 E-value=0.6 Score=44.34 Aligned_cols=47 Identities=30% Similarity=0.388 Sum_probs=40.0
Q ss_pred ccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+.|.|+++.|.| |+..|.||+|-..+|++|-..+ .-.||.++..+..
T Consensus 331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~-~i~dP~~~k~f~~ 380 (389)
T KOG0396|consen 331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDD-GIGDPRTKKVFRY 380 (389)
T ss_pred HHhhccccccCCCCCcccccCceeehhHHHHhhcccC-CCcCCCCCccccH
Confidence 578999999976 9999999999999999997653 3889999987754
No 277
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.63 E-value=54 Score=34.95 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=122.5
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 180 (407)
.|.+.|.+.. ..+..|++.|-.+...+..... ..|.+|+-..+.+. .++.-..--|...+..++ .-.+.
T Consensus 39 dL~~lLdSnkd~~KleAmKRIia~iA~G~dvS~------~Fp~VVKNVaskn~--EVKkLVyvYLlrYAEeqp--dLALL 108 (968)
T KOG1060|consen 39 DLKQLLDSNKDSLKLEAMKRIIALIAKGKDVSL------LFPAVVKNVASKNI--EVKKLVYVYLLRYAEEQP--DLALL 108 (968)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhcCCcHHH------HHHHHHHHhhccCH--HHHHHHHHHHHHHhhcCC--Cceee
Confidence 4556666555 7788999877777655443222 34667776665554 233333222333332221 12221
Q ss_pred ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 181 NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 181 ~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
.|..+-+-|+.+|..+|.-|.++|..+= . .+. .+++-.-| +...+. ++-+++.|+.||-.|-+
T Consensus 109 -----SIntfQk~L~DpN~LiRasALRvlSsIR-v-----p~I--aPI~llAIk~~~~D~---s~yVRk~AA~AIpKLYs 172 (968)
T KOG1060|consen 109 -----SINTFQKALKDPNQLIRASALRVLSSIR-V-----PMI--APIMLLAIKKAVTDP---SPYVRKTAAHAIPKLYS 172 (968)
T ss_pred -----eHHHHHhhhcCCcHHHHHHHHHHHHhcc-h-----hhH--HHHHHHHHHHHhcCC---cHHHHHHHHHhhHHHhc
Confidence 3778889999999999988877777651 1 111 12222222 334455 88999999999999988
Q ss_pred CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073 260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC 339 (407)
Q Consensus 260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 339 (407)
-+.+.+.. .+..+-.+|.+. ++.+.-.|+.+...+|- + |-.++- +--..+-+++.+.++..|-..+..|.
T Consensus 173 Ld~e~k~q----L~e~I~~LLaD~-splVvgsAv~AF~evCP--e-rldLIH--knyrklC~ll~dvdeWgQvvlI~mL~ 242 (968)
T KOG1060|consen 173 LDPEQKDQ----LEEVIKKLLADR-SPLVVGSAVMAFEEVCP--E-RLDLIH--KNYRKLCRLLPDVDEWGQVVLINMLT 242 (968)
T ss_pred CChhhHHH----HHHHHHHHhcCC-CCcchhHHHHHHHHhch--h-HHHHhh--HHHHHHHhhccchhhhhHHHHHHHHH
Confidence 55544331 233444666665 78888899999988874 3 222321 22455555555556666666666666
Q ss_pred HHhcc
Q 040073 340 SVCKF 344 (407)
Q Consensus 340 ~l~~~ 344 (407)
..|++
T Consensus 243 RYAR~ 247 (968)
T KOG1060|consen 243 RYARH 247 (968)
T ss_pred HHHHh
Confidence 66653
No 278
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=85.42 E-value=9.3 Score=39.21 Aligned_cols=74 Identities=24% Similarity=0.303 Sum_probs=47.6
Q ss_pred CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHH
Q 040073 197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSV 275 (407)
Q Consensus 197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~ 275 (407)
|+...+..|+..|......=+. . ...+|..+++|..++ +..++..|.+.|-.+|.. ++...+ ++..
T Consensus 34 g~~k~K~Laaq~I~kffk~FP~---l--~~~Ai~a~~DLcEDe---d~~iR~~aik~lp~~ck~~~~~v~k-----vaDv 100 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKHFPD---L--QEEAINAQLDLCEDE---DVQIRKQAIKGLPQLCKDNPEHVSK-----VADV 100 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-GG---G--HHHHHHHHHHHHT-S---SHHHHHHHHHHGGGG--T--T-HHH-----HHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChh---h--HHHHHHHHHHHHhcc---cHHHHHHHHHhHHHHHHhHHHHHhH-----HHHH
Confidence 6788888888888776543222 1 134688888999888 888999999999988874 344444 3567
Q ss_pred HHHHhhcc
Q 040073 276 LVDLLLDV 283 (407)
Q Consensus 276 Lv~lL~~~ 283 (407)
|+++|.+.
T Consensus 101 L~QlL~td 108 (556)
T PF05918_consen 101 LVQLLQTD 108 (556)
T ss_dssp HHHHTT--
T ss_pred HHHHHhcc
Confidence 88888775
No 279
>PF04641 Rtf2: Rtf2 RING-finger
Probab=85.10 E-value=0.72 Score=42.73 Aligned_cols=34 Identities=26% Similarity=0.492 Sum_probs=30.6
Q ss_pred ccCccccccCcCceecC-CcccccHHHHHHHHhcC
Q 040073 10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTC 43 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~ 43 (407)
++|+|+++.|.+||+.+ -|+-|.+..|.+|+...
T Consensus 35 ~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~~ 69 (260)
T PF04641_consen 35 THCALSQQPLEDPIVSDRLGRLYNKEAILEFLLDK 69 (260)
T ss_pred CcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHhc
Confidence 68999999999999764 79999999999999753
No 280
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.80 E-value=8.8 Score=42.24 Aligned_cols=143 Identities=16% Similarity=0.172 Sum_probs=103.9
Q ss_pred hHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073 228 FFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306 (407)
Q Consensus 228 ~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r 306 (407)
+.|.++...++.+ ..+|+.+.+|.-||..+..-.. .+.+ -..|.|+..|...+++.++-+++-+|.-++-.-.+-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpnl 995 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNL 995 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHH-HHHHHHHHHHhcCCCceeeecchheccchhhhcccc
Confidence 5666777776532 1278999999999998765221 2223 358999999986667888889988888887643322
Q ss_pred HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH-hChHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 040073 307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQVDASVKTKERAREILKL 385 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~ 385 (407)
++ . --+.|...+.+.+..+++.|+.+|.+|-. ..|++ -|-+..+...+. +++.+.+..|....+-
T Consensus 996 ---ie-~-~T~~Ly~rL~D~~~~vRkta~lvlshLIL--------ndmiKVKGql~eMA~cl~-D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen 996 ---IE-P-WTEHLYRRLRDESPSVRKTALLVLSHLIL--------NDMIKVKGQLSEMALCLE-DPNAEISDLAKSFFKE 1061 (1251)
T ss_pred ---cc-h-hhHHHHHHhcCccHHHHHHHHHHHHHHHH--------hhhhHhcccHHHHHHHhc-CCcHHHHHHHHHHHHH
Confidence 22 1 23577777777889999999999999985 23343 488999988887 7799999999977766
Q ss_pred HHh
Q 040073 386 NAR 388 (407)
Q Consensus 386 l~~ 388 (407)
|+.
T Consensus 1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred hhh
Confidence 655
No 281
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=84.70 E-value=54 Score=34.18 Aligned_cols=161 Identities=15% Similarity=0.074 Sum_probs=91.0
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHh---cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEA---AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE 188 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~---~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~ 188 (407)
+.+.-|+..||.+.++...+-..+-. ...+..++..+. .+. ..+--+++.|.|+-.+.. .++.+...--..+.
T Consensus 559 ~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~--an~ll~vR~L~N~f~~~~-g~~~~~s~~~~i~~ 634 (745)
T KOG0301|consen 559 EMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADP--ANQLLVVRCLANLFSNPA-GRELFMSRLESILD 634 (745)
T ss_pred HHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cch--hHHHHHHHHHHHhccCHH-HHHHHHHHHHHHhh
Confidence 66778888999888775544433331 224555555555 222 237788899999777654 34444432100222
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhc--cCCchhhhhchhhhHHHHHHH----cccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 189 SLMRVLKCGNYQSRSYAIMLLKSIFE--VADPFQLISVKQEFFTEIVNV----LRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 189 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~--~~~~~~~i~~~~g~i~~Lv~l----L~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
.++..=...+..++...+....|.+. ...+.+ + |..+.|... ++.- .+-++.-..+.||.+|+..+.
T Consensus 635 ~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~-~----~~~~~l~~ai~~~~e~~--~d~EA~yR~l~AlgtL~t~~~ 707 (745)
T KOG0301|consen 635 PVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ-L----EGKEVLLSAISTLLEPV--DDLEAIYRLLVALGTLMTVDA 707 (745)
T ss_pred hhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc-c----chHHHHHHHHHhhcccc--hhHHHHHHHHHHHHhhccccH
Confidence 22222222345555555555555442 222222 2 223333333 3221 144666777889999999998
Q ss_pred hHHHHHhcCchHHHHHHhhcc
Q 040073 263 NRIKAVEGGGVSVLVDLLLDV 283 (407)
Q Consensus 263 n~~~~v~~G~v~~Lv~lL~~~ 283 (407)
+..++...=-|..++.-+++.
T Consensus 708 ~~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 708 SVIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred HHHHHHHhcCHHHHHHHHHHh
Confidence 888888866688888888764
No 282
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.62 E-value=23 Score=38.04 Aligned_cols=178 Identities=10% Similarity=0.080 Sum_probs=100.2
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccC
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVA 216 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~ 216 (407)
+++..|.++.....+ ++...-..+|...+.-+.+...... + +..|.++.+.. +.++.+...+-.++..|+...
T Consensus 530 ~ild~L~qlas~~s~--evl~llmE~Ls~vv~~dpef~as~~-s--kI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~ 604 (1005)
T KOG2274|consen 530 MILDGLLQLASKSSD--EVLVLLMEALSSVVKLDPEFAASME-S--KICPLTINLFLKYSEDPQVASLAQDLFEELLQIA 604 (1005)
T ss_pred HHHHHHHHHcccccH--HHHHHHHHHHHHHhccChhhhhhhh-c--chhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 444555555544333 3455555577776666554333222 2 26777777664 357777888888888887654
Q ss_pred CchhhhhchhhhHHHHHHHcccCC-CCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHH
Q 040073 217 DPFQLISVKQEFFTEIVNVLRDHH-QFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLN 294 (407)
Q Consensus 217 ~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~ 294 (407)
.+...+.. -.||.||+.|.... +.+......|+..|--+..+. +.-....-.=++|++.+.....++.+....+-.
T Consensus 605 ~~~g~m~e--~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~E 682 (1005)
T KOG2274|consen 605 ANYGPMQE--RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATE 682 (1005)
T ss_pred HhhcchHH--HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHH
Confidence 43333322 47999999997541 123555666666666555432 211222222368888887765546777777777
Q ss_pred HHHHHhcCHhhHHHHHhccCchH--HHHHHH
Q 040073 295 VLDLLCRCAEGRAELLKHGAGLA--VVSKKI 323 (407)
Q Consensus 295 ~L~~L~~~~~~r~~i~~~~g~i~--~Lv~~l 323 (407)
+|+.+-..+-.+-.-...++|.. .+++.+
T Consensus 683 cLra~Is~~~eq~~t~~~e~g~~~~yImqV~ 713 (1005)
T KOG2274|consen 683 CLRALISVTLEQLLTWHDEPGHNLWYIMQVL 713 (1005)
T ss_pred HHHHHHhcCHHHHHhhccCCCccHHHHHHHH
Confidence 77776654332332333334444 444433
No 283
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=84.44 E-value=0.27 Score=53.73 Aligned_cols=45 Identities=29% Similarity=0.625 Sum_probs=38.8
Q ss_pred CcccCccccccCc-CceecCCcccccHHHHHHHHhcCCCCCCcccccc
Q 040073 8 AHFLCPISLQLMR-DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 8 ~~~~Cpi~~~~~~-dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
..+.|+||+++|+ -=-+.-|||-||-.|++-|+.. +..||.|+..
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~--~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA--SSRCPICKSI 1197 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH--hccCcchhhh
Confidence 3468999999999 6667789999999999999976 7789999753
No 284
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=84.41 E-value=0.42 Score=49.42 Aligned_cols=65 Identities=14% Similarity=0.314 Sum_probs=46.6
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~ 76 (407)
+..||||.....+|+.+.|-|.||+.|+...|... +...||.|+...... ...-.....+++++.
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~---s~~Es~r~sq~vqe~ 86 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR---SLRESPRFSQLSKES 86 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhh---hccccchHHHHHHHh
Confidence 46899999999999999999999999999866543 256799998554332 222233344555544
No 285
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.34 E-value=1.1 Score=43.23 Aligned_cols=46 Identities=13% Similarity=0.132 Sum_probs=34.3
Q ss_pred cccCccccccCcC---ceecCCcccccHHHHHHHHhc---CC---CCCCcccccc
Q 040073 9 HFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFT---CK---NNTCPVTKQV 54 (407)
Q Consensus 9 ~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~---~~---~~~cP~~~~~ 54 (407)
.|-|.||.+-..- =+-+||+|.|||+|+..|+.. +| .-.||.++.+
T Consensus 184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 4789999965543 346799999999999999964 22 2468777654
No 286
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.06 E-value=47 Score=35.68 Aligned_cols=58 Identities=10% Similarity=0.209 Sum_probs=44.9
Q ss_pred CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC
Q 040073 95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA 153 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~ 153 (407)
++.......+..+..+. +.+-+++..|+.+.+. ......+...+++...+..|++.++
T Consensus 724 ~~~e~~qeai~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~Lkdeds 782 (982)
T KOG4653|consen 724 VDIEPLQEAISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDS 782 (982)
T ss_pred ccHHHHHHHHHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCc
Confidence 44555667777777766 8999999999999885 2445566678899999999998776
No 287
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=83.81 E-value=46 Score=32.68 Aligned_cols=83 Identities=17% Similarity=0.096 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC---CCchHHHHHHHHHhcCCCh-hHHHhHhhccchhhH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA---GSDECDEALSILYHLNVSE-SYLKSIVINNGEEFL 187 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~---~~~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i 187 (407)
++-.+|+++|.++.-+++..|....+......+.+.+..... ..++..-=+..|..|..-. +-..+++.+.+| +
T Consensus 112 ~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G--l 189 (532)
T KOG4464|consen 112 HVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG--L 189 (532)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc--c
Confidence 667899999999999999999999988777777666643221 1222344445555544333 334566666664 9
Q ss_pred HHHHHHHhc
Q 040073 188 ESLMRVLKC 196 (407)
Q Consensus 188 ~~Lv~lL~~ 196 (407)
+.+..+|..
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999875
No 288
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.72 E-value=49 Score=33.23 Aligned_cols=266 Identities=14% Similarity=0.026 Sum_probs=131.5
Q ss_pred CChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-----hH-HHhHhhccc
Q 040073 110 SPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE-----SY-LKSIVINNG 183 (407)
Q Consensus 110 ~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-----~~-~~~~i~~~g 183 (407)
+...+.++++.|..++..-.-.|-.+.+.| ..+..-+..... .+++.+...+..+-.+- ++ .+.-+..+
T Consensus 268 ps~~rle~~qvl~~~a~~~~~~~~~~~~l~--RvI~~~~~~~~p--~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~- 342 (728)
T KOG4535|consen 268 PSPMRLEALQVLTLLARYFSMTQAYLMELG--RVICKCMGEADP--SIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRA- 342 (728)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHccCCCCCh--HHHHHHHHHHHHHHHHHhhhcCCCcccchhhhc-
Confidence 348899999999999877433444433322 222233333333 45777777666543211 00 01111110
Q ss_pred hhhHHH------HHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 184 EEFLES------LMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 184 g~~i~~------Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
.+-. +-..+ .+.-...+..++.++.+++...-++-.-+...-.+..+...=.++ +.-.+.+|.+++.-
T Consensus 343 --~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~---~~lv~~aA~Ra~~V 417 (728)
T KOG4535|consen 343 --PFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSK---NRLVKAAASRALGV 417 (728)
T ss_pred --cHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchH---HHHHHHHHHhhcee
Confidence 0100 00111 112233456677777777654332221111111122222211122 33355556666666
Q ss_pred hCCCCchHHHH-HhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-----CHhhHHHHHhccCchHHHHHHHHc-----
Q 040073 257 LCPWGRNRIKA-VEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-----CAEGRAELLKHGAGLAVVSKKILR----- 325 (407)
Q Consensus 257 L~~~~~n~~~~-v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-----~~~~r~~i~~~~g~i~~Lv~~l~~----- 325 (407)
+..++.-+... .-+.+...+...|.+. .-..++++++++.+++. -+.-+..... .+..++..+.+
T Consensus 418 yVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR---~sg~ll~~~~~~A~~~ 493 (728)
T KOG4535|consen 418 YVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQER---FSGLLLLKMLRSAIEA 493 (728)
T ss_pred EEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHH---HHHHHHHHHHHHHHHh
Confidence 66666544332 2245566666777664 56788999999999864 1221222111 11122222222
Q ss_pred --CCchhhHHHHHHHHHHhccCC-chHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 326 --VSHAASDRAVRILCSVCKFSA-TARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 326 --~s~~~~e~a~~~L~~l~~~~~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
...+++.+|+++|.++...-. -.+........|.+.+++.-..-.+..++|=+|.-.+.+|-++
T Consensus 494 ~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn 560 (728)
T KOG4535|consen 494 SADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKN 560 (728)
T ss_pred hhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcC
Confidence 136789999999998874210 0001111122345555554433345788899999999988775
No 289
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=83.69 E-value=23 Score=37.74 Aligned_cols=176 Identities=11% Similarity=0.100 Sum_probs=104.1
Q ss_pred HHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHH--HHHHHHhcC
Q 040073 120 RLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLE--SLMRVLKCG 197 (407)
Q Consensus 120 ~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~--~Lv~lL~~~ 197 (407)
.|.....+++++-+.+.+.|++..+...++..+. ...+..++.++.+++...+......... .+. .+-.++..-
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~-~~~~~~il~~l~n~~~~~~~~~~~~~~~---~~~~~~f~~~~~~w 569 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDN-EELHRKILGLLGNLAEVLELRELLMIFE---FIDFSVFKVLLNKW 569 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccc-hhHHHHHHHHHHHHHHHhhhhhhhhHHH---HHHHHHHHHHHhhc
Confidence 7788888899999999999999999999998744 3458899999999886554322222211 232 222344433
Q ss_pred -ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH-
Q 040073 198 -NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV- 275 (407)
Q Consensus 198 -~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~- 275 (407)
+.+.--+|+.+|..+....+.........-+-..+++..... ........-...+.+
T Consensus 570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~---------------------~~~~~~~~~~~~f~~~ 628 (699)
T KOG3665|consen 570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRW---------------------LTSEIRVINDRSFFPR 628 (699)
T ss_pred chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhcc---------------------Cccceeehhhhhcchh
Confidence 336667888888887765554111111111222223332222 112222222223333
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHH
Q 040073 276 LVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSK 321 (407)
Q Consensus 276 Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~ 321 (407)
+..++.....+...-.|++++.++... +++.+.+.. .++++.+..
T Consensus 629 ~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~-~~~~~~~~~ 674 (699)
T KOG3665|consen 629 ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRE-SNGFELIEN 674 (699)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHh-ccchhhhhh
Confidence 555555544567778899999988875 454544444 677776665
No 290
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=83.44 E-value=15 Score=39.46 Aligned_cols=150 Identities=13% Similarity=0.163 Sum_probs=98.1
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc-cchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN-NGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~-~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
..+|.|++-......+ .+.+=+.+|.++-.+-+ +..+.. -. +.+|.|++.|+-.+..+|..+..++.-+....+
T Consensus 867 ~ivP~l~~~~~t~~~~--~K~~yl~~LshVl~~vP--~~vllp~~~-~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~ 941 (1030)
T KOG1967|consen 867 DIVPILVSKFETAPGS--QKHNYLEALSHVLTNVP--KQVLLPQFP-MLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE 941 (1030)
T ss_pred hhHHHHHHHhccCCcc--chhHHHHHHHHHHhcCC--HHhhccchh-hHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence 4688888888733332 24555555555433322 344433 23 378888999998999999999999988766554
Q ss_pred chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073 218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNV 295 (407)
Q Consensus 218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~ 295 (407)
.-..--. .-++|.|..+=.+.++....++..|+.+|..|.. .+.+.-.--+-.++.+|+..|.+. .+-+++.|..+
T Consensus 942 tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 942 TLQTEHL-STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDT 1018 (1030)
T ss_pred ccchHHH-hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHH
Confidence 4322222 1367777776655421127899999999999998 555444444556788899999885 66777777653
No 291
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=83.34 E-value=42 Score=31.87 Aligned_cols=225 Identities=14% Similarity=0.053 Sum_probs=132.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL 190 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L 190 (407)
-.+.-|+.++..+... ++.|+.+-. .-.-..++.++++.-.....+.+.+-+++.|+.+.+ ..+.+.+.. +.+..|
T Consensus 164 lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~-~aqdi~K~~-dli~dl 240 (432)
T COG5231 164 LTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKE-CAQDIDKMD-DLINDL 240 (432)
T ss_pred HHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHH-HHHHHHHHH-HHHHHH
Confidence 4456678888888776 677766654 334456777777654423458899999999888775 344454433 257777
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHhhccC--CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH-------------
Q 040073 191 MRVLKCG-NYQSRSYAIMLLKSIFEVA--DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL------------- 254 (407)
Q Consensus 191 v~lL~~~-~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL------------- 254 (407)
+.+.+.. ...+..-++.++.++.... ..-...... |-+..-|++|...+ ++++-...=..-|
T Consensus 241 i~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll-~~~~k~vq~L~erk-ysDEel~~di~~i~s~l~~~~k~l~~ 318 (432)
T COG5231 241 IAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLL-NDISKCVQVLLERK-YSDEELVIDIERIRSRLVQNTKKLCI 318 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhh-cchHHHHHHHHhcC-CChHHHHHHHHHHHHHHHhhhhhhhH
Confidence 7777653 3445567777888887532 111122222 33555666665431 2222111111111
Q ss_pred -----HH-----hCCCC---------chHHHHHhc--CchHHHHHHhhcccchh-HHHHHHHHHHHHhc-CHhhHHHHHh
Q 040073 255 -----VE-----LCPWG---------RNRIKAVEG--GGVSVLVDLLLDVTERR-VCELMLNVLDLLCR-CAEGRAELLK 311 (407)
Q Consensus 255 -----~~-----L~~~~---------~n~~~~v~~--G~v~~Lv~lL~~~~~~~-~~~~al~~L~~L~~-~~~~r~~i~~ 311 (407)
.. |+-++ +|...+.+. ..+..|.++|... .++ ....|+.=+..+.+ .++++.-+..
T Consensus 319 fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n-~~nt~i~vAc~Di~~~Vr~~PE~~~vl~K 397 (432)
T COG5231 319 FDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSN-NPNTWICVACSDIFQLVRASPEINAVLSK 397 (432)
T ss_pred HHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcC-CCCceEeeeHhhHHHHHHhCchHHHHHHH
Confidence 11 11111 255666553 3677788888775 333 33344544544444 6777776655
Q ss_pred ccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 312 HGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 312 ~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
.||=..++.+|.+.+++.+-.|+.++..+-+
T Consensus 398 -yg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 398 -YGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred -hhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 6777888887777788999999998877653
No 292
>PLN02195 cellulose synthase A
Probab=83.33 E-value=0.74 Score=49.59 Aligned_cols=45 Identities=7% Similarity=0.066 Sum_probs=36.2
Q ss_pred cCccccc-----cCcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQ-----LMRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~-----~~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|.||++ .+-+|.+.+ ||.-.||.|-|-= .+.|+..||+|+..+.
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeye-r~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYE-IKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhh-hhcCCccCCccCCccc
Confidence 6999997 566888775 9999999999543 3346999999998776
No 293
>PLN02189 cellulose synthase
Probab=83.12 E-value=0.72 Score=50.00 Aligned_cols=45 Identities=20% Similarity=0.166 Sum_probs=35.7
Q ss_pred cCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|+||++- .-+|.+.+ ||.-.||.|-|-=.+ .|+..||.|+..+.
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~-eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERR-EGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhh-cCCccCcccCCchh
Confidence 89999974 55677664 999999999965444 46999999998765
No 294
>PHA02862 5L protein; Provisional
Probab=82.97 E-value=1.1 Score=36.84 Aligned_cols=46 Identities=15% Similarity=0.260 Sum_probs=34.2
Q ss_pred cCccccccCcCceecCCccc-----ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 11 LCPISLQLMRDPVTVSTGIT-----YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t-----~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.|=||.+-=.+.+ -||..+ .-++|+++|+...++..||.|+.++..
T Consensus 4 iCWIC~~~~~e~~-~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 4 ICWICNDVCDERN-NFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred EEEEecCcCCCCc-ccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 5778887655553 555432 558999999987667899999998754
No 295
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.36 E-value=0.72 Score=48.44 Aligned_cols=42 Identities=21% Similarity=0.336 Sum_probs=34.8
Q ss_pred cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
.-.|..|.-.+.-|++- .|||.|-++|.+ . +...||.|.-.+
T Consensus 840 ~skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~-~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 840 VSKCSACEGTLDLPFVHFLCGHSYHQHCLE----D-KEDKCPKCLPEL 882 (933)
T ss_pred eeeecccCCccccceeeeecccHHHHHhhc----c-CcccCCccchhh
Confidence 35899999999999876 699999999988 2 377899996533
No 296
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=81.90 E-value=17 Score=32.56 Aligned_cols=139 Identities=8% Similarity=-0.025 Sum_probs=89.6
Q ss_pred HHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc----cCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHH
Q 040073 203 SYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR----DHHQFSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVL 276 (407)
Q Consensus 203 ~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~L 276 (407)
-+|..+|.-++++++.+..+.. +.+--.|-..|. +. ...-.+-.+++++..|..+++ ..+.+..-.+||..
T Consensus 118 cnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~--~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 118 CNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNS--KFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCC--ccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 4666667777777777665554 332112223333 22 134577888999999998765 45556677899999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc---CchH----HHHHHHH-cCCchhhHHHHHHHHHHhccC
Q 040073 277 VDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG---AGLA----VVSKKIL-RVSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 277 v~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~---g~i~----~Lv~~l~-~~s~~~~e~a~~~L~~l~~~~ 345 (407)
+..+..+ ++-.+..|+.++..+-.++.|-+-+...- -+|. .++.-+. .++.+.-++++++-..+|...
T Consensus 195 LrIme~g-SElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p 270 (315)
T COG5209 195 LRIMELG-SELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP 270 (315)
T ss_pred HHHHHhh-hHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence 9999987 66667788888888877777766554321 1222 2222221 235677888999888888643
No 297
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=81.65 E-value=0.56 Score=41.68 Aligned_cols=49 Identities=14% Similarity=0.210 Sum_probs=37.8
Q ss_pred CCcccCcccc-ccCcCce----ecC-CcccccHHHHHHHHhcCCCCCCc--ccccccc
Q 040073 7 PAHFLCPISL-QLMRDPV----TVS-TGITYDRVNIERWLFTCKNNTCP--VTKQVLQ 56 (407)
Q Consensus 7 p~~~~Cpi~~-~~~~dPv----~~~-~g~t~~r~~i~~~~~~~~~~~cP--~~~~~~~ 56 (407)
-.+-.||||. +.+-.|= +-| |=|..|-+|+.+-|.. |.-.|| -|++.+.
T Consensus 8 ~~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~-GpAqCP~~gC~kILR 64 (314)
T COG5220 8 MEDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR-GPAQCPYKGCGKILR 64 (314)
T ss_pred hhcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC-CCCCCCCccHHHHHH
Confidence 3456899998 6666773 234 9999999999999987 588899 6766543
No 298
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=81.41 E-value=16 Score=39.25 Aligned_cols=146 Identities=14% Similarity=0.063 Sum_probs=93.4
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhh-chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC-ch
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLIS-VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG-RN 263 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~-~n 263 (407)
.+|.|++.........|.+-..+|.+...+-+ +..+. .-....|.|++-|.-. |..++-.++.+|.-+..-. .-
T Consensus 868 ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP-~~vllp~~~~LlPLLLq~Ls~~---D~~v~vstl~~i~~~l~~~~tL 943 (1030)
T KOG1967|consen 868 IVPILVSKFETAPGSQKHNYLEALSHVLTNVP-KQVLLPQFPMLLPLLLQALSMP---DVIVRVSTLRTIPMLLTESETL 943 (1030)
T ss_pred hHHHHHHHhccCCccchhHHHHHHHHHHhcCC-HHhhccchhhHHHHHHHhcCCC---ccchhhhHhhhhhHHHHhcccc
Confidence 68888888886677788888888888765433 33332 2234778888888877 8888888888888765522 22
Q ss_pred HHHHHhcCchHHHHHHhhcccc--hhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHH
Q 040073 264 RIKAVEGGGVSVLVDLLLDVTE--RRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRI 337 (407)
Q Consensus 264 ~~~~v~~G~v~~Lv~lL~~~~~--~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~ 337 (407)
...-++ -.||.++.+=.+..+ ..+++.|+..|..|.+ .+..+-.-.. ...+..+++.|.+.....++.|+.+
T Consensus 944 ~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 944 QTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred chHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHHHH
Confidence 221122 357777766555422 5688999999999998 4433222222 2345666775555455667777654
No 299
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=81.32 E-value=0.48 Score=37.18 Aligned_cols=34 Identities=12% Similarity=0.216 Sum_probs=27.6
Q ss_pred CCCCCcccCccccccCcCce--ecCCcccccHHHHH
Q 040073 4 IEVPAHFLCPISLQLMRDPV--TVSTGITYDRVNIE 37 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv--~~~~g~t~~r~~i~ 37 (407)
+.|.++-.|++|++.+.+++ +.||||.|-..|+.
T Consensus 73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 35677888999999988777 44899999888864
No 300
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.15 E-value=80 Score=33.57 Aligned_cols=231 Identities=14% Similarity=0.141 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
..|.--++.|+..+..++.-+. -.|..+..+|.+.++ .+..+|+..|..|+.+....+. +...++
T Consensus 221 ~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stss--aV~fEaa~tlv~lS~~p~alk~--------Aa~~~i 285 (948)
T KOG1058|consen 221 SLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSS--AVIFEAAGTLVTLSNDPTALKA--------AASTYI 285 (948)
T ss_pred HHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCc--hhhhhhcceEEEccCCHHHHHH--------HHHHHH
Confidence 3344455566666654444332 246788888888755 4688888888888765432221 233444
Q ss_pred HHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073 192 RVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG 270 (407)
Q Consensus 192 ~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~ 270 (407)
.++.. .+-.++.-...-|..+. ...+.+.. |.+--.+++|... +-++++.++.....|..+.. ...++.
T Consensus 286 ~l~~kesdnnvklIvldrl~~l~---~~~~~il~--~l~mDvLrvLss~---dldvr~Ktldi~ldLvssrN-vediv~- 355 (948)
T KOG1058|consen 286 DLLVKESDNNVKLIVLDRLSELK---ALHEKILQ--GLIMDVLRVLSSP---DLDVRSKTLDIALDLVSSRN-VEDIVQ- 355 (948)
T ss_pred HHHHhccCcchhhhhHHHHHHHh---hhhHHHHH--HHHHHHHHHcCcc---cccHHHHHHHHHHhhhhhcc-HHHHHH-
Confidence 55433 22223322222333332 44444543 6666777888887 89999999999888876443 222221
Q ss_pred CchHHHHH-Hhhcc-----cchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 271 GGVSVLVD-LLLDV-----TERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 271 G~v~~Lv~-lL~~~-----~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
.|-. +.+.. .+..-+..-+.+++..+.. ++ +. +..|+.|++++.+.++......+..+...-.
T Consensus 356 ----~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~----~a--atvV~~ll~fisD~N~~aas~vl~FvrE~ie 425 (948)
T KOG1058|consen 356 ----FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE----VA--ATVVSLLLDFISDSNEAAASDVLMFVREAIE 425 (948)
T ss_pred ----HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH----HH--HHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 1111 11111 1234466667777777653 33 22 2357888888876555444444444433332
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
..++ .++..+++|++-+..=.+.+.-+-|.|++.
T Consensus 426 k~p~-------Lr~~ii~~l~~~~~~irS~ki~rgalwi~G 459 (948)
T KOG1058|consen 426 KFPN-------LRASIIEKLLETFPQIRSSKICRGALWILG 459 (948)
T ss_pred hCch-------HHHHHHHHHHHhhhhhcccccchhHHHHHH
Confidence 2221 234456666665543335666666666654
No 301
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=81.14 E-value=43 Score=30.40 Aligned_cols=142 Identities=17% Similarity=0.214 Sum_probs=85.8
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ 220 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 220 (407)
++.|+.-+....++. .+...+..|..++.++. . .. . .++..|..+.+.+..+.+.-+...+..+-...+...
T Consensus 2 l~~L~~~l~~~~~~~-~~~~~L~~L~~l~~~~~---~-~~-~--~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPE-LQLPLLEALPSLACHKN---V-CV-P--PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF 73 (234)
T ss_pred hHHHHHHhcCCCChH-HHHHHHHHHHHHhccCc---c-ch-h--HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH
Confidence 345555455444433 47788888888887761 1 11 1 156667777777777766666667776654433211
Q ss_pred hhhchhhhHHHHHHH--cc-----cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHh-hcccchhHHHHH
Q 040073 221 LISVKQEFFTEIVNV--LR-----DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLL-LDVTERRVCELM 292 (407)
Q Consensus 221 ~i~~~~g~i~~Lv~l--L~-----~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL-~~~~~~~~~~~a 292 (407)
+.+..++.. ++ .++....+..-..+.+++.+|...+++ -...++.+.+.| .+. ++..+..+
T Consensus 74 ------~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~----g~~ll~~ls~~L~~~~-~~~~~ala 142 (234)
T PF12530_consen 74 ------PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDH----GVDLLPLLSGCLNQSC-DEVAQALA 142 (234)
T ss_pred ------HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhh----HHHHHHHHHHHHhccc-cHHHHHHH
Confidence 445555544 11 110013455555567888998866661 123677888888 554 67788899
Q ss_pred HHHHHHHhc
Q 040073 293 LNVLDLLCR 301 (407)
Q Consensus 293 l~~L~~L~~ 301 (407)
+..|..|+.
T Consensus 143 le~l~~Lc~ 151 (234)
T PF12530_consen 143 LEALAPLCE 151 (234)
T ss_pred HHHHHHHHH
Confidence 999999993
No 302
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=80.98 E-value=10 Score=41.84 Aligned_cols=142 Identities=14% Similarity=0.052 Sum_probs=103.4
Q ss_pred hHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC
Q 040073 186 FLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 186 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
+.|.++..-++ ++++.+..|.-+|..+...+. .++.. ..+.|+.++... .++-++.++..++..|+..-
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa---~fces--~l~llftimeks--p~p~IRsN~VvalgDlav~f 992 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISA---EFCES--HLPLLFTIMEKS--PSPRIRSNLVVALGDLAVRF 992 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhH---HHHHH--HHHHHHHHHhcC--CCceeeecchheccchhhhc
Confidence 67777887754 578999999999999865432 24443 489999999854 38999999999999998755
Q ss_pred chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073 262 RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV 341 (407)
Q Consensus 262 ~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l 341 (407)
+|- ++. .-+.|...|.+. +..+++.|+.+|..|-..+--| .-|.++-+...|-+..+..+..|-.....|
T Consensus 993 pnl---ie~-~T~~Ly~rL~D~-~~~vRkta~lvlshLILndmiK-----VKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen 993 PNL---IEP-WTEHLYRRLRDE-SPSVRKTALLVLSHLILNDMIK-----VKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred ccc---cch-hhHHHHHHhcCc-cHHHHHHHHHHHHHHHHhhhhH-----hcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence 542 222 246677788776 8899999999999998765322 246777777777777777777776555555
Q ss_pred hcc
Q 040073 342 CKF 344 (407)
Q Consensus 342 ~~~ 344 (407)
++.
T Consensus 1063 s~k 1065 (1251)
T KOG0414|consen 1063 SSK 1065 (1251)
T ss_pred hhc
Confidence 543
No 303
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=80.20 E-value=35 Score=28.97 Aligned_cols=140 Identities=13% Similarity=0.121 Sum_probs=81.2
Q ss_pred hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh-cCHh
Q 040073 226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC-RCAE 304 (407)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~-~~~~ 304 (407)
...++.|.++|+++ .+.++++.++++|..|..-++.+.+..+.+. + ..-............+. ..... ..++
T Consensus 9 P~LL~~L~~iLk~e--~s~~iR~E~lr~lGilGALDP~~~k~~~~~~-~---~~~~~~~~~~~~~~~l~-~~~~~~~~ee 81 (160)
T PF11865_consen 9 PELLDILLNILKTE--QSQSIRREALRVLGILGALDPYKHKSIQKSL-D---SKSSENSNDESTDISLP-MMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHHHHhC--CCHHHHHHHHHHhhhccccCcHHHhcccccC-C---ccccccccccchhhHHh-hccCCCchHH
Confidence 34677888999887 4799999999999999988887777544321 1 00000001122222221 11111 2222
Q ss_pred hHHHHHhccCchHHHHHHHHcCC-chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073 305 GRAELLKHGAGLAVVSKKILRVS-HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE 381 (407)
Q Consensus 305 ~r~~i~~~~g~i~~Lv~~l~~~s-~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~ 381 (407)
.-.. ..+..|++.+.+.+ ......++.++..+.+..+.+ +.... ...+|.++..++ .+++..++.--.
T Consensus 82 ~y~~-----vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~-cv~~L--~~viP~~l~~i~-~~~~~~~e~~~~ 150 (160)
T PF11865_consen 82 YYPT-----VVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLK-CVPYL--PQVIPIFLRVIR-TCPDSLREFYFQ 150 (160)
T ss_pred HHHH-----HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcC-chhHH--HHHhHHHHHHHH-hCCHHHHHHHHH
Confidence 2222 34668888676655 344556788888888543332 33332 248899999998 566676666433
No 304
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=80.07 E-value=75 Score=36.50 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=93.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~ 264 (407)
.+..++..|..+...+|..|..+|..+...+.. +.....+-....+-+.+. +..++++|+..+..... .++..
T Consensus 817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~---vL~~~dvq~~Vh~R~~Ds---sasVREAaldLvGrfvl~~~e~~ 890 (1692)
T KOG1020|consen 817 YLKLILSVLGENAIALRTKALKCLSMIVEADPS---VLSRPDVQEAVHGRLNDS---SASVREAALDLVGRFVLSIPELI 890 (1692)
T ss_pred HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChH---hhcCHHHHHHHHHhhccc---hhHHHHHHHHHHhhhhhccHHHH
Confidence 778888999988999999999999999876653 211122223344556566 78899999998875433 23322
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC---chhhHHHHHHHHHH
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS---HAASDRAVRILCSV 341 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s---~~~~e~a~~~L~~l 341 (407)
.+. ...+.+-+.+. +..++..++.+|..+|.....-..+.+ ..+++|.+.+ ...++.+..++..+
T Consensus 891 ~qy-----Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~~i~~------~cakmlrRv~DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 891 FQY-----YDQIIERILDT-GVSVRKRVIKILRDICEETPDFSKIVD------MCAKMLRRVNDEEGNIKKLVRETFLKL 958 (1692)
T ss_pred HHH-----HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChhhHHH------HHHHHHHHhccchhHHHHHHHHHHHHH
Confidence 222 22333333332 678999999999999986665555554 3455555553 23577777887777
Q ss_pred hccC
Q 040073 342 CKFS 345 (407)
Q Consensus 342 ~~~~ 345 (407)
.-..
T Consensus 959 WF~p 962 (1692)
T KOG1020|consen 959 WFTP 962 (1692)
T ss_pred hccC
Confidence 6543
No 305
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.81 E-value=44 Score=35.90 Aligned_cols=179 Identities=15% Similarity=0.135 Sum_probs=94.5
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
..+..+-..+|..+...|+.+....+-+..+.. .+++....+.|+++ ++-+--+|...+.-||.. ..+.
T Consensus 734 ~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkde---dsyvyLnaI~gv~~Lcev-------y~e~ 802 (982)
T KOG4653|consen 734 SSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDE---DSYVYLNAIRGVVSLCEV-------YPED 802 (982)
T ss_pred HHhcCCcccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhccc---CceeeHHHHHHHHHHHHh-------cchh
Confidence 334445677888899999999876654444544 58889999999988 777777777766666542 2334
Q ss_pred chHHHHHHhhcccc---hhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 272 GVSVLVDLLLDVTE---RRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~---~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
.+|-|.+-=.+..+ .+.+-+.=.++.++.. .++-.....+ -.+...++.+.+.....+-.++++|..+|....-
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~ 880 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAF 880 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhh
Confidence 55555552222110 0111111122222221 1111111111 1122333322222234477777777777753211
Q ss_pred hHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 348 ARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 348 ~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
.+..-+ ...+..++.+.+.+++.-.|+.|+.++..+
T Consensus 881 -~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~l 916 (982)
T KOG4653|consen 881 -QVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAEL 916 (982)
T ss_pred -hhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHH
Confidence 011111 235556666677777888888888777654
No 306
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=79.67 E-value=12 Score=32.05 Aligned_cols=114 Identities=18% Similarity=0.148 Sum_probs=74.1
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC--chHHHHHHhhcccchhHHHHHHHHHHHHhcCH-
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG--GVSVLVDLLLDVTERRVCELMLNVLDLLCRCA- 303 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G--~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~- 303 (407)
..+..+.++|+++ +++.+..++..+..++...+ ...+.+.| -+..|+++|....+..+++.++.+|..|...-
T Consensus 25 ~l~~ri~~LL~s~---~~~~rw~G~~Ll~~~~~~~~-~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~ 100 (165)
T PF08167_consen 25 KLVTRINSLLQSK---SAYSRWAGLCLLKVTVEQCS-WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR 100 (165)
T ss_pred HHHHHHHHHhCCC---ChhhHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 4667777888887 88888888888888776432 34554543 67888889987656778888888888876533
Q ss_pred ---hhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCC
Q 040073 304 ---EGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSA 346 (407)
Q Consensus 304 ---~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~ 346 (407)
+-.+++.- + -+|.++..+..-. ....+.++.+|..+-...+
T Consensus 101 ~~p~l~Rei~t-p-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 101 GKPTLTREIAT-P-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHP 146 (165)
T ss_pred CCCchHHHHhh-c-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCC
Confidence 32333322 2 2555555554433 3566667777776665444
No 307
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=79.40 E-value=15 Score=30.57 Aligned_cols=80 Identities=15% Similarity=0.210 Sum_probs=60.4
Q ss_pred chHHHHHHHHc-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHH-HHHHHhcC--CCHHHHHHHHHHHHHHHhhc
Q 040073 315 GLAVVSKKILR-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSK-LCLVLQVD--ASVKTKERAREILKLNARAW 390 (407)
Q Consensus 315 ~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~-Ll~ll~~~--~~~~~k~~A~~lL~~l~~~~ 390 (407)
++..+-+.|.. .++..+-.|+.+|-.+..+++. .+..++...+.+.. |+.++... ....+|.+...+++..+...
T Consensus 39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~-~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH-RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH-HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 45566666654 3577888899999999988775 47888888899987 89988632 34688999999998888776
Q ss_pred cCCCC
Q 040073 391 RDSPC 395 (407)
Q Consensus 391 ~~~~~ 395 (407)
...|.
T Consensus 118 ~~~~~ 122 (141)
T cd03565 118 RGSPD 122 (141)
T ss_pred CCCcc
Confidence 65554
No 308
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=79.16 E-value=1.1 Score=48.72 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=35.5
Q ss_pred cCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|.||++- .-||.+.+ ||.-.||.|-|-=.+ .|+..||+|+..+.
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~-eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhh-cCCccCCccCCchh
Confidence 89999974 45677765 999999999955443 46999999998765
No 309
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=79.13 E-value=2.2 Score=31.04 Aligned_cols=47 Identities=17% Similarity=0.162 Sum_probs=20.9
Q ss_pred ccCccccccC-----cCceecC--CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLM-----RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~-----~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.|.||++-. -+|.+.+ ||.-.||.|.+-=.++ |+..||.|+.++..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke-g~q~CpqCkt~ykr 63 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE-GNQVCPQCKTRYKR 63 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT-S-SB-TTT--B---
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc-CcccccccCCCccc
Confidence 3688887532 3555553 8888999999887665 59999999977654
No 310
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.92 E-value=20 Score=33.69 Aligned_cols=135 Identities=17% Similarity=0.177 Sum_probs=82.8
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
++...+..|.+.+++.+..+...|+.|+..+.....-.. ..+|-.+++-+++. ...+.+.|+.++..+-+.-.+..
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl---RS~VsraA~~t~~difs~ln~~i 164 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL---RSAVSRAACMTLADIFSSLNNSI 164 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555777777888888888888888766543222222 34677788888877 78899999999988876544433
Q ss_pred HHHhcCchHHHHHHhh-cc--cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 266 KAVEGGGVSVLVDLLL-DV--TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~-~~--~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
.- ....++..|. .. ++.-+++.|-.+|..+..+.. ...+ ++.|+-.+.+.++..+..+.
T Consensus 165 ~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~~~------L~~L~~~~~~~n~r~r~~a~ 226 (334)
T KOG2933|consen 165 DQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-PQKL------LRKLIPILQHSNPRVRAKAA 226 (334)
T ss_pred HH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-hHHH------HHHHHHHHhhhchhhhhhhh
Confidence 22 2444444333 32 145578888888888877543 2222 23344434455566655553
No 311
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=78.90 E-value=74 Score=31.83 Aligned_cols=186 Identities=11% Similarity=0.055 Sum_probs=101.7
Q ss_pred hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
...|..++..+.++. +.+..|+..|..+.-++ ....+.... -.+..++..|++..+. ..+..|+.+|..++.+..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~-~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDE-IIKKLALRVLREMLTNQP 362 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhh-HHHHHHHHHHHHHHHhch
Confidence 345667777777663 77888999888876553 333332221 1345667777764442 348999999999887653
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCChhHH-HHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGNYQSR-SYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~-~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
.+++.... .+|..+++.-.+...++. ..+-.++.-++++..... |..+..++.+. +...--.++.
T Consensus 363 --~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~---D~~~~~~~iK 428 (516)
T KOG2956|consen 363 --ARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA---DEPRAVAVIK 428 (516)
T ss_pred --HhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC---cchHHHHHHH
Confidence 34443322 245555555555444444 444455666666655332 22223333333 3333333444
Q ss_pred HHHHhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 253 LLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 253 aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
.+-.|...- .+..+.. -...|.+++--.+. +..++..|+-.|..+.
T Consensus 429 m~Tkl~e~l-~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 429 MLTKLFERL-SAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMV 476 (516)
T ss_pred HHHHHHhhc-CHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHH
Confidence 444444311 1111111 24677777777664 6677777777766654
No 312
>PLN02436 cellulose synthase A
Probab=78.56 E-value=1.2 Score=48.35 Aligned_cols=45 Identities=20% Similarity=0.183 Sum_probs=35.6
Q ss_pred cCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|.||++- .-||.+.+ ||.-.||.|-|-=.+ .|+..||.|+..+.
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~-eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERR-EGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhh-cCCccCcccCCchh
Confidence 89999964 45677775 999999999955444 46999999998865
No 313
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=78.40 E-value=2.2 Score=34.50 Aligned_cols=50 Identities=14% Similarity=0.181 Sum_probs=40.3
Q ss_pred CcccCccccccCcCceec----CCcccccHHHHHHHHhc-CCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTV----STGITYDRVNIERWLFT-CKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~----~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~~ 57 (407)
.-+.|-||.|.-.|+--+ +||.+.|-.|=-.-|+- .-++.||+|+..+..
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 457899999999998765 59999999999886653 236899999887754
No 314
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.19 E-value=9.9 Score=39.68 Aligned_cols=87 Identities=17% Similarity=0.072 Sum_probs=62.9
Q ss_pred chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH
Q 040073 285 ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC 364 (407)
Q Consensus 285 ~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll 364 (407)
+..++-.++.+|..|..........+- .+....+...+.+.-+.++-.|+.+|..+=....+++ ..++..+.
T Consensus 98 dk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-------~~v~n~l~ 169 (892)
T KOG2025|consen 98 DKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-------CPVVNLLK 169 (892)
T ss_pred chhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-------ccHHHHHH
Confidence 678999999999999884443434443 2344555555665568889999999998886555532 34567788
Q ss_pred HHHhcCCCHHHHHHH
Q 040073 365 LVLQVDASVKTKERA 379 (407)
Q Consensus 365 ~ll~~~~~~~~k~~A 379 (407)
.++|.++++++|+.|
T Consensus 170 ~liqnDpS~EVRRaa 184 (892)
T KOG2025|consen 170 DLIQNDPSDEVRRAA 184 (892)
T ss_pred HHHhcCCcHHHHHHH
Confidence 889999999999886
No 315
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=78.13 E-value=1.7 Score=39.01 Aligned_cols=48 Identities=15% Similarity=0.294 Sum_probs=31.2
Q ss_pred cCce-ecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHH
Q 040073 20 RDPV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 20 ~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~ 76 (407)
.||. ++.|+|.||-.|..... ...||.|++++... .+..| |..-|..+
T Consensus 15 ~~~f~LTaC~HvfC~~C~k~~~----~~~C~lCkk~ir~i---~l~~s--lp~~ik~~ 63 (233)
T KOG4739|consen 15 QDPFFLTACRHVFCEPCLKASS----PDVCPLCKKSIRII---QLNRS--LPTDIKSY 63 (233)
T ss_pred CCceeeeechhhhhhhhcccCC----ccccccccceeeee---ecccc--cchhHHHH
Confidence 5666 56899999999854421 33899999986542 45444 44444443
No 316
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=77.78 E-value=19 Score=30.60 Aligned_cols=143 Identities=10% Similarity=0.065 Sum_probs=76.3
Q ss_pred hHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073 186 FLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~ 264 (407)
.++.|.++|+++ +..+|..+.++|+.|..-+..+.+..... .+.-. -.+. +.......+ .+.... ..-
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~~--~~~~---~~~~~~~~l---~~~~~~-~~~ 79 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSKS--SENS---NDESTDISL---PMMGIS-PSS 79 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCccc--cccc---cccchhhHH---hhccCC-Cch
Confidence 577888889875 79999999999999988888766543321 11000 0111 111111111 111111 122
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHH
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSV 341 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l 341 (407)
....-..++..|+..|++.+-..-...++.++..+...... ..... ...+|.++..+....+..+|.-..-|..+
T Consensus 80 ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l 155 (160)
T PF11865_consen 80 EEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL 155 (160)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 23333456888888888753223333455555555432211 22222 34688888877765566666554444443
No 317
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=77.58 E-value=8 Score=28.14 Aligned_cols=67 Identities=13% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
...|.+++.++++.+.....+- ..++++.++++..+. ....++--+..+|.-++...+....+-+.|
T Consensus 4 lKaaLWaighIgss~~G~~lL~-~~~iv~~iv~~a~~s--~v~siRGT~fy~Lglis~T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSSPLGIQLLD-ESDIVEDIVKIAENS--PVLSIRGTCFYVLGLISSTEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcChHHHHHHh-hcCHHHHHHHHHHhC--CccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence 4678899999987655554443 458999999999876 367889999999999999888888877766
No 318
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=77.58 E-value=0.23 Score=35.55 Aligned_cols=42 Identities=19% Similarity=0.167 Sum_probs=23.8
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+..||.|.+. +....|+-+|-.|-.++.. ...||.|++++..
T Consensus 1 e~~CP~C~~~----L~~~~~~~~C~~C~~~~~~---~a~CPdC~~~Le~ 42 (70)
T PF07191_consen 1 ENTCPKCQQE----LEWQGGHYHCEACQKDYKK---EAFCPDCGQPLEV 42 (70)
T ss_dssp --B-SSS-SB----EEEETTEEEETTT--EEEE---EEE-TTT-SB-EE
T ss_pred CCcCCCCCCc----cEEeCCEEECcccccccee---cccCCCcccHHHH
Confidence 4689999885 3444589999988766543 4589999998753
No 319
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=77.06 E-value=8.3 Score=29.45 Aligned_cols=69 Identities=13% Similarity=0.151 Sum_probs=48.5
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNV 170 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~ 170 (407)
..+...+..|.++. +.|-.++..|+.+..... ...+-..+++..+...|+++++ =+--+|+..|..|+.
T Consensus 3 ~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~Ds--yVYL~aI~~L~~La~ 72 (92)
T PF10363_consen 3 ETLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDS--YVYLNAIKGLAALAD 72 (92)
T ss_pred HHHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCc--hHHHHHHHHHHHHHH
Confidence 45667788888877 999999999999988744 1122224566777777777665 346777787777664
No 320
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=76.87 E-value=2.2 Score=28.87 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.1
Q ss_pred ccCccccccC--cCceecC--CcccccHHH
Q 040073 10 FLCPISLQLM--RDPVTVS--TGITYDRVN 35 (407)
Q Consensus 10 ~~Cpi~~~~~--~dPv~~~--~g~t~~r~~ 35 (407)
-.|++|++.| .|.++++ ||-.|=|.|
T Consensus 6 ~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C 35 (54)
T PF14446_consen 6 CKCPVCGKKFKDGDDIVVCPECGAPYHRDC 35 (54)
T ss_pred ccChhhCCcccCCCCEEECCCCCCcccHHH
Confidence 4799999999 7888774 999999999
No 321
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=76.39 E-value=10 Score=31.66 Aligned_cols=105 Identities=17% Similarity=0.138 Sum_probs=52.1
Q ss_pred CCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-CCchHHHHHHHHHhcCC
Q 040073 93 PPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-GSDECDEALSILYHLNV 170 (407)
Q Consensus 93 ~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~ 170 (407)
-|++..+...++..|+.+. ......+.-|.+-....- --..-++++++..++ ..... +.+....|+..|..|-
T Consensus 17 lPL~a~Qt~~lielLk~~~~~~~~~lldLL~~RV~PGV-D~AA~VKA~FL~~ia---~g~~~~~~Is~~~Av~LLGtM~- 91 (154)
T PF11791_consen 17 LPLNAEQTAELIELLKNPPAGEEAFLLDLLTNRVPPGV-DEAAYVKAEFLAAIA---KGEISSPLISPAEAVELLGTML- 91 (154)
T ss_dssp ----HHHHHHHHHHHHS--TT-HHHHHHHHHHSS--TT--HHHHHHHHHHHHHH---TTSS-BTTB-HHHHHHHHTTS--
T ss_pred CCCCHHHHHHHHHHHhCCCCccHHHHHHHHHhcCCCCC-ChHHHHHHHHHHHHH---cCCccCCCcCHHHHHHHHhhcc-
Confidence 3477888899999998776 444444444444222111 111223333333322 22211 2223566666554421
Q ss_pred ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 040073 171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFE 214 (407)
Q Consensus 171 ~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~ 214 (407)
||.-+..|+.+|.+.+.++...|+.+|.+-.-
T Consensus 92 ------------GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~TlL 123 (154)
T PF11791_consen 92 ------------GGYNVQPLIDLLKSDDEELAEEAAEALKNTLL 123 (154)
T ss_dssp ------------SSTTHHHHHHGG--G-TTTHHHHHHHHHT--T
T ss_pred ------------CCCcHHHHHHHHcCCcHHHHHHHHHHHHhhHH
Confidence 33569999999999999999999999987543
No 322
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=76.32 E-value=1.2 Score=41.46 Aligned_cols=26 Identities=15% Similarity=0.402 Sum_probs=19.0
Q ss_pred cccCccccccCc--Cc-eecCCcccccHH
Q 040073 9 HFLCPISLQLMR--DP-VTVSTGITYDRV 34 (407)
Q Consensus 9 ~~~Cpi~~~~~~--dP-v~~~~g~t~~r~ 34 (407)
.|.||+|++.|. +. +.-+.||+||..
T Consensus 2 ~~~CP~C~~~l~~~~~~~~C~~~h~fd~a 30 (272)
T PRK11088 2 SYQCPLCHQPLTLEENSWICPQNHQFDCA 30 (272)
T ss_pred cccCCCCCcchhcCCCEEEcCCCCCCccc
Confidence 489999999885 22 333468999874
No 323
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=75.93 E-value=67 Score=29.76 Aligned_cols=153 Identities=20% Similarity=0.197 Sum_probs=91.0
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc-ch------hhHHHHHHHHhcCC----hhHHHHHHH
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN-GE------EFLESLMRVLKCGN----YQSRSYAIM 207 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-gg------~~i~~Lv~lL~~~~----~~~~~~a~~ 207 (407)
|..+-|..++-.+-.+....+.++.+|..|..... ..++... +| ..+|.+...+..++ .......+.
T Consensus 60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~--~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~ 137 (262)
T PF14225_consen 60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPD--DPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAE 137 (262)
T ss_pred CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCC--ccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Confidence 45555666665554433347888888888775432 1333322 11 13566666666555 134456666
Q ss_pred HHHHhhccCC--chhhhh-----------------------------chhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 208 LLKSIFEVAD--PFQLIS-----------------------------VKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 208 ~L~~Ls~~~~--~~~~i~-----------------------------~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
.|..++.... +-..+. .....+..|+++|.++ .+..+...+..|+.
T Consensus 138 ~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~---~~w~~~~~L~iL~~ 214 (262)
T PF14225_consen 138 ALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG---PPWLRRKTLQILKV 214 (262)
T ss_pred HHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC---cHHHHHHHHHHHHH
Confidence 7777664321 101110 0123455677777777 78889999999998
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
+-..-+.+.. .....+.+|+++|.+ +....|+.+|.....
T Consensus 215 ll~~~d~~~~-~~~dlispllrlL~t----~~~~eAL~VLd~~v~ 254 (262)
T PF14225_consen 215 LLPHVDMRSP-HGADLISPLLRLLQT----DLWMEALEVLDEIVT 254 (262)
T ss_pred HhccccCCCC-cchHHHHHHHHHhCC----ccHHHHHHHHHHHHh
Confidence 8876554444 555688899998866 345677787776543
No 324
>COG4530 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.85 E-value=2.8 Score=32.55 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=24.6
Q ss_pred CCCCcccCccccccC----cCceecC-CcccccHHHHHH
Q 040073 5 EVPAHFLCPISLQLM----RDPVTVS-TGITYDRVNIER 38 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~----~dPv~~~-~g~t~~r~~i~~ 38 (407)
++-..-+||-|+.-| +||++.| ||.+|-|+..+.
T Consensus 5 eLGtKridPetg~KFYDLNrdPiVsPytG~s~P~s~fe~ 43 (129)
T COG4530 5 ELGTKRIDPETGKKFYDLNRDPIVSPYTGKSYPRSYFEE 43 (129)
T ss_pred cccccccCccccchhhccCCCccccCcccccchHHHHHh
Confidence 444556899998655 6788887 888887776554
No 325
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=75.83 E-value=77 Score=30.41 Aligned_cols=157 Identities=17% Similarity=0.175 Sum_probs=107.2
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCC-Ch-hHHHhHhhccchhhHHHHHHHHhc----CC---------hhHHHHH
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNV-SE-SYLKSIVINNGEEFLESLMRVLKC----GN---------YQSRSYA 205 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~-~~~~~~i~~~gg~~i~~Lv~lL~~----~~---------~~~~~~a 205 (407)
+..+.+.|.+... .....++..|..+.. +. ...++++..-+ --.+.+.+++.. .. .++|.+.
T Consensus 58 ~k~lyr~L~~~~~--~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd-~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~f 134 (330)
T PF11707_consen 58 LKLLYRSLSSSKP--SLTNPALRLLTAIVSFDGGALAREVLRSFD-FSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNF 134 (330)
T ss_pred HHHHHHHhCcCcH--HHHHHHHHHHHHHHccCCHHHHHHHHHhcC-CchhhHHHHhccccccccccccccccCcCHHHHH
Confidence 5666667766554 235677788887776 33 22345554433 135566666642 11 2888899
Q ss_pred HHHHHHhhccCC--chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH-hCCCC----chHHHHHhcCchHHHHH
Q 040073 206 IMLLKSIFEVAD--PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE-LCPWG----RNRIKAVEGGGVSVLVD 278 (407)
Q Consensus 206 ~~~L~~Ls~~~~--~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~-L~~~~----~n~~~~v~~G~v~~Lv~ 278 (407)
+..+..+....+ -+..+....+.+..+.+-|..+ +.++....+.+|.. +...+ ..|..+..+..+..|+.
T Consensus 135 I~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D---~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~ 211 (330)
T PF11707_consen 135 IRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD---PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLAS 211 (330)
T ss_pred HHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCC---CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHH
Confidence 998888766543 3455666667788899989887 89999999999995 44332 25666777788899999
Q ss_pred Hhhcccch----hHHHHHHHHHHHHhcCHh
Q 040073 279 LLLDVTER----RVCELMLNVLDLLCRCAE 304 (407)
Q Consensus 279 lL~~~~~~----~~~~~al~~L~~L~~~~~ 304 (407)
+.... +. .+.+.+-..|..+|.++.
T Consensus 212 Ly~~~-~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 212 LYSRD-GEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred Hhccc-CCcccchHHHHHHHHHHHHhcCCC
Confidence 77664 45 788889999999887653
No 326
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=75.81 E-value=1.9 Score=29.06 Aligned_cols=34 Identities=32% Similarity=0.362 Sum_probs=21.3
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
+.||+|+.--++-|.-.+- +++- ..+||.|++..
T Consensus 5 i~CP~CgnKTR~kir~DT~-----------LkNf-PlyCpKCK~Et 38 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTV-----------LKNF-PLYCPKCKQET 38 (55)
T ss_pred EECCCCCCccceeeecCce-----------eccc-cccCCCCCceE
Confidence 5899999766655433321 1111 56899999864
No 327
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=75.56 E-value=1.1e+02 Score=33.40 Aligned_cols=278 Identities=12% Similarity=0.136 Sum_probs=0.0
Q ss_pred HHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhh
Q 040073 103 ILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVI 180 (407)
Q Consensus 103 ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~ 180 (407)
++..+++-+ .....+++-|..|+.+ ......+++.|+|..|+.+-+-... -.-....|+.+.....--.++-.
T Consensus 357 ~~~~~~q~~d~~l~~~~~k~~~~l~~h-~kfa~~fv~~~gi~kll~vpr~s~~----~~g~s~cly~~~~~q~~mervc~ 431 (1516)
T KOG1832|consen 357 LLERTSQLDDSPLLPDVMKLICALAAH-RKFAAMFVERRGILKLLAVPRVSET----FYGLSSCLYTIGSLQGIMERVCA 431 (1516)
T ss_pred hhhhhhccccccccHHHHHHHHHHHHh-hHHHHHHHHhhhhHHHhcCCCchhh----hhhHHHHHHHHhhhhhHHHHHhh
Q ss_pred ccch---hhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc-------------------c
Q 040073 181 NNGE---EFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR-------------------D 238 (407)
Q Consensus 181 ~~gg---~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-------------------~ 238 (407)
-... +++..-+++|.......+.+++......-....--..+-...| +..|+.+++ .
T Consensus 432 ~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~frail~~fd~~d~-l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ 510 (1516)
T KOG1832|consen 432 LPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFRAILDAFDAQDS-LQKLLAILKDAASVTGANTDRSLPEVMIS 510 (1516)
T ss_pred ccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhccCcCccccHHHhh
Q ss_pred CCCCCHHHHHHHHHHHHHh-------------------------------------------------------------
Q 040073 239 HHQFSQQASKAALKLLVEL------------------------------------------------------------- 257 (407)
Q Consensus 239 ~~~~~~~~~~~A~~aL~~L------------------------------------------------------------- 257 (407)
. +.......+.+|+.-
T Consensus 511 s---s~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~ 587 (1516)
T KOG1832|consen 511 S---SKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFV 587 (1516)
T ss_pred h---hhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhh
Q ss_pred CCCCchHHHHHhcCchHHHHHHhhccc-------chhHHHHHHHHHHHHhcCHhhHHHHHhc-------cCchHHHHHHH
Q 040073 258 CPWGRNRIKAVEGGGVSVLVDLLLDVT-------ERRVCELMLNVLDLLCRCAEGRAELLKH-------GAGLAVVSKKI 323 (407)
Q Consensus 258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~~-------~~~~~~~al~~L~~L~~~~~~r~~i~~~-------~g~i~~Lv~~l 323 (407)
-...+....+...|++..++++..-.. -.+....|+.+|..+..-++++.++... ..||..++..-
T Consensus 588 ~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a 667 (1516)
T KOG1832|consen 588 KAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAA 667 (1516)
T ss_pred hhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecc
Q ss_pred HcC----CchhhHHHHHHHHHHhccCCc---------------------------------hHHHHHHHHhChHHHHHHH
Q 040073 324 LRV----SHAASDRAVRILCSVCKFSAT---------------------------------ARVLQEMLQVGVVSKLCLV 366 (407)
Q Consensus 324 ~~~----s~~~~e~a~~~L~~l~~~~~~---------------------------------~~~~~~~~~~g~i~~Ll~l 366 (407)
... +++.+..|+.++-++.+..++ +.+..++....||..|+.+
T Consensus 668 ~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~L 747 (1516)
T KOG1832|consen 668 NGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKL 747 (1516)
T ss_pred cccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHH
Q ss_pred HhcC----CCHHHHHHHHHHHHHHHhh
Q 040073 367 LQVD----ASVKTKERAREILKLNARA 389 (407)
Q Consensus 367 l~~~----~~~~~k~~A~~lL~~l~~~ 389 (407)
|+-. ..+..|.-|...|--|++.
T Consensus 748 l~~k~P~t~aD~IRalAc~~L~GLaR~ 774 (1516)
T KOG1832|consen 748 LQYKNPPTTADCIRALACRVLLGLARD 774 (1516)
T ss_pred HhccCCCCcHHHHHHHHHHHHhccccC
No 328
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=75.05 E-value=1.8 Score=36.26 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
...|.||- ||++|.-.-........+.+.||.|+..+..
T Consensus 97 ~~~Y~Cp~------------C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~~ 135 (147)
T smart00531 97 NAYYKCPN------------CQSKYTFLEANQLLDMDGTFTCPRCGEELEE 135 (147)
T ss_pred CcEEECcC------------CCCEeeHHHHHHhcCCCCcEECCCCCCEEEE
Confidence 45678885 5555553222222222245899999998865
No 329
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=75.05 E-value=1.7 Score=47.23 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=35.9
Q ss_pred ccCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 10 FLCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
-.|.||++- .-||.+.+ ||.-.||.|-+-=.+ .|+..||.|+..+.
T Consensus 16 ~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~-~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 16 KTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERS-EGNQCCPQCNTRYK 68 (1044)
T ss_pred chhhccccccCcCCCCCEEEEeccCCCccccchhhhhhh-cCCccCCccCCchh
Confidence 379999964 55677765 999999999955444 46999999998865
No 330
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=74.69 E-value=3.6 Score=26.51 Aligned_cols=40 Identities=13% Similarity=0.309 Sum_probs=20.9
Q ss_pred CccccccCcCceecC---CcccccHHHHHHHHhcCCCCCCccc
Q 040073 12 CPISLQLMRDPVTVS---TGITYDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 12 Cpi~~~~~~dPv~~~---~g~t~~r~~i~~~~~~~~~~~cP~~ 51 (407)
|-+|.++..-=+.=+ |+-.+=..|++.||.......||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 445666555555443 7777888899999976434479986
No 331
>PF14353 CpXC: CpXC protein
Probab=74.64 E-value=1.8 Score=35.32 Aligned_cols=48 Identities=21% Similarity=0.160 Sum_probs=32.5
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCcccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQ 56 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~ 56 (407)
+++||-|+..|.-.|-..-.-+-+....++-+... -..+||.||....
T Consensus 1 ~itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~ 49 (128)
T PF14353_consen 1 EITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFR 49 (128)
T ss_pred CcCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCcee
Confidence 46899999999888755544455555566655321 1367999998753
No 332
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=74.49 E-value=20 Score=29.28 Aligned_cols=73 Identities=18% Similarity=0.337 Sum_probs=57.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|-+.|+++++.++..|..+|..|..+.... ..++. ..++..|+.++.+....+.+++..++..|.+.+.
T Consensus 38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s-~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVAD-KEFLLELVKIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhh-HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6788889999999999999999999998776542 33333 3677789999976212588999999999988765
No 333
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=74.21 E-value=1.7 Score=41.54 Aligned_cols=45 Identities=9% Similarity=0.216 Sum_probs=36.6
Q ss_pred cccCccccccCcCc----eecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 9 HFLCPISLQLMRDP----VTVSTGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 9 ~~~Cpi~~~~~~dP----v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
++.|-.|++.+--- =-+||.|.|--.|+.+++.+.+..+||.|++
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence 46899998765321 1579999999999999998877899999984
No 334
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=73.14 E-value=1.5e+02 Score=32.53 Aligned_cols=131 Identities=11% Similarity=0.072 Sum_probs=74.9
Q ss_pred hHHHHHHHHhc--------CChhHHHHHHHHHHHhhccCCchh---hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 186 FLESLMRVLKC--------GNYQSRSYAIMLLKSIFEVADPFQ---LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 186 ~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~~---~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
.++.++.+|.+ .+..-+.-|..++.+|++.=.-+. ..+.. =.+..+.-.+++. .--.+..|++.+
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~-flv~hVfP~f~s~---~g~Lrarac~vl 486 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEY-FLVNHVFPEFQSP---YGYLRARACWVL 486 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHH-HHHHHhhHhhcCc---hhHHHHHHHHHH
Confidence 78888888872 244455677777777763211111 11110 0122222334555 667899999999
Q ss_pred HHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHc
Q 040073 255 VELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILR 325 (407)
Q Consensus 255 ~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~ 325 (407)
...+. .-.+...+.+ ++......|.++.+..++..|+-+|..+-.+. .....+..+ ||.+++.+++
T Consensus 487 ~~~~~~df~d~~~l~~--ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~h---vp~~mq~lL~ 554 (1010)
T KOG1991|consen 487 SQFSSIDFKDPNNLSE--ALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAH---VPPIMQELLK 554 (1010)
T ss_pred HHHHhccCCChHHHHH--HHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhh---hhHHHHHHHH
Confidence 99995 3333333333 45666666764336778888888888766544 344445443 5666655544
No 335
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=73.00 E-value=79 Score=29.26 Aligned_cols=219 Identities=13% Similarity=0.064 Sum_probs=122.8
Q ss_pred HHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccc
Q 040073 105 NDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNG 183 (407)
Q Consensus 105 ~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g 183 (407)
..|.+.+ ..|.+|+..|..+...-+... ....-+..|+.++.+.-+.......++..+..|.....-......
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~--- 79 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAV--- 79 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHH---
Confidence 4556666 788899999988776543221 111225666666654332212244445555544422210011110
Q ss_pred hhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 184 EEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 184 g~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
..+..+.+-.. +-....|...-.+|..+....... ..++ .+++..+++.+..+ .||...-.+...+..+...
T Consensus 80 -~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gE--kDPRnLl~~F~l~~~i~~~ 154 (262)
T PF14500_consen 80 -KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGE--KDPRNLLLSFKLLKVILQE 154 (262)
T ss_pred -HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHh
Confidence 02333332221 234566778888888876543221 2222 35888899999876 4999999999888887764
Q ss_pred CchHHHHHhcCchHHHHHHhhc--------cc-ch-h-HHHH-HHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCc
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLD--------VT-ER-R-VCEL-MLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH 328 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~--------~~-~~-~-~~~~-al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~ 328 (407)
-+. ...++-+.+.+.. .+ ++ . .++. ..+....++.++. +.. -.+|.|+..|.+.+.
T Consensus 155 ~~~------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~----fa~--~~~p~LleKL~s~~~ 222 (262)
T PF14500_consen 155 FDI------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL----FAP--FAFPLLLEKLDSTSP 222 (262)
T ss_pred ccc------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh----hHH--HHHHHHHHHHcCCCc
Confidence 442 2233444444432 01 11 1 2333 3333334554442 333 368999999998888
Q ss_pred hhhHHHHHHHHHHhccCC
Q 040073 329 AASDRAVRILCSVCKFSA 346 (407)
Q Consensus 329 ~~~e~a~~~L~~l~~~~~ 346 (407)
.+|.-++.+|...+..-+
T Consensus 223 ~~K~D~L~tL~~c~~~y~ 240 (262)
T PF14500_consen 223 SVKLDSLQTLKACIENYG 240 (262)
T ss_pred HHHHHHHHHHHHHHHHCC
Confidence 999999999998776443
No 336
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=72.24 E-value=3.2 Score=36.06 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=31.1
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
=++.|.||-|+.- .||+ +... ..+.||.|+.++...+ .-..-..|++.|+.....
T Consensus 114 ~~~~Y~Cp~C~~r----------ytf~-----eA~~--~~F~Cp~Cg~~L~~~d--n~~~~~~l~~~I~~l~~~ 168 (178)
T PRK06266 114 NNMFFFCPNCHIR----------FTFD-----EAME--YGFRCPQCGEMLEEYD--NSELIKELKEQIKELEEE 168 (178)
T ss_pred CCCEEECCCCCcE----------EeHH-----HHhh--cCCcCCCCCCCCeecc--cHHHHHHHHHHHHHHHHH
Confidence 3567889887631 2332 2222 2799999999886521 111124456666655443
No 337
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=72.12 E-value=95 Score=33.00 Aligned_cols=100 Identities=14% Similarity=0.093 Sum_probs=64.1
Q ss_pred hhHHHHHHH-cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh
Q 040073 227 EFFTEIVNV-LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG 305 (407)
Q Consensus 227 g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~ 305 (407)
++|..|+.. .++. +++++++|.-+|.-.+..+++ ..|..+++|.+.-++-++--++.+|..-|.+.-.
T Consensus 554 kair~lLh~aVsD~---nDDVrRaAVialGFVl~~dp~--------~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~ 622 (929)
T KOG2062|consen 554 KAIRRLLHVAVSDV---NDDVRRAAVIALGFVLFRDPE--------QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL 622 (929)
T ss_pred hhHHHhhccccccc---chHHHHHHHHHheeeEecChh--------hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc
Confidence 466777766 4444 889999999999877765443 3677788887754667777888888877765544
Q ss_pred HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 306 RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 306 r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
+.++ + .+.+|++ +...-+++.|+-++..+...
T Consensus 623 ~eAi-~---lLepl~~---D~~~fVRQgAlIa~amIm~Q 654 (929)
T KOG2062|consen 623 KEAI-N---LLEPLTS---DPVDFVRQGALIALAMIMIQ 654 (929)
T ss_pred HHHH-H---HHhhhhc---ChHHHHHHHHHHHHHHHHHh
Confidence 5443 1 1233332 22345566676666666554
No 338
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.71 E-value=1e+02 Score=31.07 Aligned_cols=137 Identities=14% Similarity=0.046 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHH
Q 040073 243 SQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSK 321 (407)
Q Consensus 243 ~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~ 321 (407)
+...+..|++.|.|.+.. ++-+..... -.+..++.=|-++.+.++.-.++..|..+...-.++. + . ..-++.-++
T Consensus 271 ~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~-l-~-~~~l~ialr 346 (533)
T KOG2032|consen 271 SAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDD-L-E-SYLLNIALR 346 (533)
T ss_pred hhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcc-h-h-hhchhHHHH
Confidence 678899999999999987 333322222 2455555555454356777777777776665443332 1 1 122232222
Q ss_pred ---HHHcCCchhhHHHH---HHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 322 ---KILRVSHAASDRAV---RILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 322 ---~l~~~s~~~~e~a~---~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
+..+..++.+-.|. +.|..++++...+...+ .+. +.+.+|+.-++ +.++..-.+....++.+
T Consensus 347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte-~v~-k~~~~lllhl~-d~~p~va~ACr~~~~~c 414 (533)
T KOG2032|consen 347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTE-QVK-KRLAPLLLHLQ-DPNPYVARACRSELRTC 414 (533)
T ss_pred HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHH-HHH-hccccceeeeC-CCChHHHHHHHHHHHhc
Confidence 22233455555554 45666666555443333 233 34456666676 45666555555555543
No 339
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.26 E-value=1.5e+02 Score=31.79 Aligned_cols=188 Identities=18% Similarity=0.231 Sum_probs=119.8
Q ss_pred HHHHHHhhccCCCCchHHHHHH-HHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh
Q 040073 142 EFLATIITKSDAGSDECDEALS-ILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ 220 (407)
Q Consensus 142 ~~Lv~lL~~~~~~~~~~~~a~~-~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~ 220 (407)
.-|..+|.+..++. ..+|.. +|..++.+.+ + .. ..|.+|+-..+.+.+++...---|..-+....+-.
T Consensus 38 ~dL~~lLdSnkd~~--KleAmKRIia~iA~G~d-----v--S~--~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSL--KLEAMKRIIALIAKGKD-----V--SL--LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA 106 (968)
T ss_pred HHHHHHHhccccHH--HHHHHHHHHHHHhcCCc-----H--HH--HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce
Confidence 45778888776643 444544 7777776653 1 11 68888888889999999887776666665544322
Q ss_pred hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 221 LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 221 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
... |..+=+-|+++ ++.++..|+++|..+ |..++.-=++-++-+...+ .++-++..|+-++-.|=
T Consensus 107 LLS-----IntfQk~L~Dp---N~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D-~s~yVRk~AA~AIpKLY 171 (968)
T KOG1060|consen 107 LLS-----INTFQKALKDP---NQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTD-PSPYVRKTAAHAIPKLY 171 (968)
T ss_pred eee-----HHHHHhhhcCC---cHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcC-CcHHHHHHHHHhhHHHh
Confidence 221 55566778888 999999998888765 3333321112222233333 36788888888888776
Q ss_pred c-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh
Q 040073 301 R-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ 368 (407)
Q Consensus 301 ~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~ 368 (407)
. .++.+.++.+ .+=++|.+.++.+--.|+.+.-.+| +++ -+.+ ++-..+|..+|-
T Consensus 172 sLd~e~k~qL~e------~I~~LLaD~splVvgsAv~AF~evC---Per---ldLI-HknyrklC~ll~ 227 (968)
T KOG1060|consen 172 SLDPEQKDQLEE------VIKKLLADRSPLVVGSAVMAFEEVC---PER---LDLI-HKNYRKLCRLLP 227 (968)
T ss_pred cCChhhHHHHHH------HHHHHhcCCCCcchhHHHHHHHHhc---hhH---HHHh-hHHHHHHHhhcc
Confidence 5 4455555544 2223344567888888999999988 442 2222 356788888875
No 340
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=71.19 E-value=1.6 Score=28.77 Aligned_cols=30 Identities=23% Similarity=0.540 Sum_probs=18.9
Q ss_pred ceecCCccc-----ccHHHHHHHHhcCCCCCCccc
Q 040073 22 PVTVSTGIT-----YDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 22 Pv~~~~g~t-----~~r~~i~~~~~~~~~~~cP~~ 51 (407)
|.+.||+-+ .=++|+++|+...++..|++|
T Consensus 13 ~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 13 PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp -EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 677776532 347899999987567789876
No 341
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=70.70 E-value=21 Score=28.84 Aligned_cols=72 Identities=17% Similarity=0.226 Sum_probs=52.9
Q ss_pred hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH-hChHHHHHHHHhc-------CCCHHHHHHHHHHHHHHH
Q 040073 316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQV-------DASVKTKERAREILKLNA 387 (407)
Q Consensus 316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~-------~~~~~~k~~A~~lL~~l~ 387 (407)
+..|.+.|.+.++.++..++.+|-.+|.... ..++..+.+ ...|..+..+=.. .....+|.+|.+++.++-
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~-~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN-SDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCC-HHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 4467787877789999999999999998765 346666664 4566666554331 126789999999999875
Q ss_pred h
Q 040073 388 R 388 (407)
Q Consensus 388 ~ 388 (407)
.
T Consensus 119 ~ 119 (122)
T cd03572 119 S 119 (122)
T ss_pred c
Confidence 4
No 342
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=70.35 E-value=24 Score=29.38 Aligned_cols=71 Identities=18% Similarity=0.335 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+-|.++++.++..|..+|..+..+.... ..+. +.+++..|+.++.+. .++.+++.++..+.+-+.
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~eva-s~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVA-SREFMDELKDLIKTT--KNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHh-hHHHHHHHHHHHccc--CCHHHHHHHHHHHHHHHH
Confidence 7888889999999999999999999998775432 3344 458999999999864 488999999999888764
No 343
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=70.07 E-value=1.3e+02 Score=31.45 Aligned_cols=160 Identities=16% Similarity=0.167 Sum_probs=86.0
Q ss_pred HHHHHHHHHhcCCChhHHHhHhhcc-chhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-hHHHHHHH
Q 040073 158 CDEALSILYHLNVSESYLKSIVINN-GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-FFTEIVNV 235 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~~~~~~i~~~-gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-~i~~Lv~l 235 (407)
+-=|+.+|+.+..+...+-.+.... |-..+..++..+. +++..+.-++++|.|+-.+.-....+..... .+.+++.
T Consensus 561 ~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~- 638 (745)
T KOG0301|consen 561 MFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIE- 638 (745)
T ss_pred hhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhh-
Confidence 5556667776666554333333211 1014445555554 5677788999999999766444433322211 1122221
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCC--CCchHHHHHhcCchHHHHHHhhcc----cchhHHHHHHHHHHHHhcCHhhHHHH
Q 040073 236 LRDHHQFSQQASKAALKLLVELCP--WGRNRIKAVEGGGVSVLVDLLLDV----TERRVCELMLNVLDLLCRCAEGRAEL 309 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~--~~~n~~~~v~~G~v~~Lv~lL~~~----~~~~~~~~al~~L~~L~~~~~~r~~i 309 (407)
.+.. .+..++.+-+....|++. ...+-+ .|..+.|...+... .+-+..-+.+.+|.+|+..+.+..++
T Consensus 639 ~~s~--~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~ 712 (745)
T KOG0301|consen 639 ASSL--SNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQL 712 (745)
T ss_pred hhcc--cchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHH
Confidence 1222 134444444444445443 222221 45555555555432 12344557788888998888777777
Q ss_pred HhccCchHHHHHHHHcC
Q 040073 310 LKHGAGLAVVSKKILRV 326 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~~ 326 (407)
... -.+..+++.+...
T Consensus 713 A~~-~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 713 AKN-RSVDSIAKKLKEA 728 (745)
T ss_pred HHh-cCHHHHHHHHHHh
Confidence 663 4688888877654
No 344
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=69.99 E-value=2.1 Score=28.64 Aligned_cols=13 Identities=23% Similarity=0.904 Sum_probs=11.2
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+.
T Consensus 30 ~Lp~~w~CP~C~a 42 (50)
T cd00730 30 DLPDDWVCPVCGA 42 (50)
T ss_pred HCCCCCCCCCCCC
Confidence 4899999999974
No 345
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=69.93 E-value=3.1 Score=25.04 Aligned_cols=10 Identities=30% Similarity=0.481 Sum_probs=8.2
Q ss_pred CCCCcccccc
Q 040073 45 NNTCPVTKQV 54 (407)
Q Consensus 45 ~~~cP~~~~~ 54 (407)
...||+|+.+
T Consensus 17 ~~~CP~Cg~~ 26 (33)
T cd00350 17 PWVCPVCGAP 26 (33)
T ss_pred CCcCcCCCCc
Confidence 6789999874
No 346
>PLN02400 cellulose synthase
Probab=69.90 E-value=2.2 Score=46.61 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=35.1
Q ss_pred cCcccccc-----CcCceecC--CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQL-----MRDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~-----~~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|.||++- .-+|.+.+ ||.-.||.|-|-=. +.|+..||+|+..+.
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYER-keGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYER-KDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheec-ccCCccCcccCCccc
Confidence 89999964 45677765 99999999995433 346999999998765
No 347
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=69.17 E-value=25 Score=26.86 Aligned_cols=72 Identities=17% Similarity=0.161 Sum_probs=55.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
.+...+..|.++.+.+|.++...|+.|....+ .......+++..+...|+++ ++-+--+|...|..|+...+
T Consensus 4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~---DsyVYL~aI~~L~~La~~~p 75 (92)
T PF10363_consen 4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE---DSYVYLNAIKGLAALADRHP 75 (92)
T ss_pred HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHCh
Confidence 35556677778888899999999999976655 22333356778888889888 88899999999999886444
No 348
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=69.04 E-value=78 Score=29.28 Aligned_cols=127 Identities=19% Similarity=0.176 Sum_probs=75.8
Q ss_pred CCCCCChhhHHHHHHHhc---CCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh
Q 040073 91 PQPPVDKTQIVKILNDAK---KSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH 167 (407)
Q Consensus 91 ~~~~~~~~~i~~ll~~L~---~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 167 (407)
|++|.....|..+-..|. .+.-.+..|...|+++-.+ + .|-.|+.-|..+ |...+-+++-+++.
T Consensus 147 Pa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--e---------aI~al~~~l~~~--SalfrhEvAfVfGQ 213 (289)
T KOG0567|consen 147 PAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE--E---------AINALIDGLADD--SALFRHEVAFVFGQ 213 (289)
T ss_pred CCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH--H---------HHHHHHHhcccc--hHHHHHHHHHHHhh
Confidence 333433344555544443 2225566777777777443 1 134444444433 22346666666655
Q ss_pred cCCChhHHHhHhhccchhhHHHHHHHHhc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH
Q 040073 168 LNVSESYLKSIVINNGEEFLESLMRVLKC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ 245 (407)
Q Consensus 168 L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~ 245 (407)
|-. .- +|+.|.+.|.. ..+-+|..|+.+|..++.. ..++.|.+.+++. .+-
T Consensus 214 l~s-----------~~--ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~e-----------~~~~vL~e~~~D~---~~v 266 (289)
T KOG0567|consen 214 LQS-----------PA--AIPSLIKVLLDETEHPMVRHEAAEALGAIADE-----------DCVEVLKEYLGDE---ERV 266 (289)
T ss_pred ccc-----------hh--hhHHHHHHHHhhhcchHHHHHHHHHHHhhcCH-----------HHHHHHHHHcCCc---HHH
Confidence 431 11 58888888865 5788999999999988632 4578888888877 666
Q ss_pred HHHHHHHHHHHh
Q 040073 246 ASKAALKLLVEL 257 (407)
Q Consensus 246 ~~~~A~~aL~~L 257 (407)
+++.+..+|-.+
T Consensus 267 v~esc~valdm~ 278 (289)
T KOG0567|consen 267 VRESCEVALDML 278 (289)
T ss_pred HHHHHHHHHHHH
Confidence 666666665443
No 349
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=68.99 E-value=1.5e+02 Score=32.04 Aligned_cols=183 Identities=13% Similarity=0.006 Sum_probs=102.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+|.++.+-...+..++......+..++.... ..+... ..-+.+..-+.+. ..+++++|+..|..++..-. .
T Consensus 480 lLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~~~~~~-~~~~l~~~~l~d~---v~~Ir~~aa~~l~~l~~~~G--~ 551 (759)
T KOG0211|consen 480 LLPAIVELAEDLLWRVRLAILEYIPQLALQLG--VEFFDE-KLAELLRTWLPDH---VYSIREAAARNLPALVETFG--S 551 (759)
T ss_pred hhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--hHHhhH-HHHHHHHhhhhhh---HHHHHHHHHHHhHHHHHHhC--c
Confidence 46666666655567777777777777664322 112221 1122222233333 45788888888887765322 1
Q ss_pred HHHhcCchHHHHHHhhccc--chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 266 KAVEGGGVSVLVDLLLDVT--ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~--~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
.-...-.++.++.+..+.. .+...-.++..|..+...+- ..+ ..+|.+..+..+..+..+-+++..|..+-.
T Consensus 552 ~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei----~~~--~Llp~~~~l~~D~vanVR~nvak~L~~i~~ 625 (759)
T KOG0211|consen 552 EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI----TCE--DLLPVFLDLVKDPVANVRINVAKHLPKILK 625 (759)
T ss_pred chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH----HHH--HHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence 1112224666666665531 22333344445555444332 222 246777775566667889999998888876
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.-. .-...+-+.+++..|..+.+...|..|......+..
T Consensus 626 ~L~------~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 626 LLD------ESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred hcc------hHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 322 222234566777777667777778777776666544
No 350
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=68.94 E-value=52 Score=25.46 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=51.7
Q ss_pred hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 222 ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 222 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
+....+.+..|++-.+.. +......++..|..|..++.....+.+-|++.-|-++=..- ++..+...-.+|.
T Consensus 25 l~~~~~Ll~~LleWFnf~---~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~-~~~~~~~id~il~ 96 (98)
T PF14726_consen 25 LVKERLLLKQLLEWFNFP---PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNV-EPNLQAEIDEILD 96 (98)
T ss_pred HccHHHHHHHHHHHhCCC---CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcC-CHHHHHHHHHHHh
Confidence 334456777777777766 66688889999999999999999999999998865554433 4555554444443
No 351
>PF06416 DUF1076: Protein of unknown function (DUF1076); InterPro: IPR010489 This entry is represented by Bacteriophage 2851, Orf74 (EP2851_74). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 2KKX_A 2KKY_A.
Probab=68.32 E-value=5.9 Score=31.03 Aligned_cols=53 Identities=23% Similarity=0.485 Sum_probs=30.4
Q ss_pred CCCCCCc-ccCccccccCcCceecC-Cc-----ccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 3 EIEVPAH-FLCPISLQLMRDPVTVS-TG-----ITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 3 ~~~~p~~-~~Cpi~~~~~~dPv~~~-~g-----~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
++.-|++ +.|||++++-..=|-+. ++ .-||..++.+-..++ ..=|.++.+++.
T Consensus 33 ~f~C~ee~L~CPITL~iPe~GVFvkNs~~S~VC~LyD~~Al~~Lv~~~--~~HPLSREpit~ 92 (113)
T PF06416_consen 33 EFQCPEEHLTCPITLCIPENGVFVKNSSGSDVCSLYDKEALSRLVREG--APHPLSREPITP 92 (113)
T ss_dssp CCTS-CHHH-BTTTTC--SCEEEEECTTTSSEEEEEEHHHHHHHHHCT-----TTT-----T
T ss_pred hccCCHHHcCCCeEEeecCCceEEecCCCCccceecCHHHHHHHHHcC--CCCCCccCCCCh
Confidence 3444554 69999999999998664 22 349999999988763 334889888865
No 352
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=68.18 E-value=1.8e+02 Score=31.41 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=30.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc-hhhhhch
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP-FQLISVK 225 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~ 225 (407)
.+|.++..|+.++.-+-..|+.++..+....++ +..++..
T Consensus 499 ~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~ 539 (960)
T KOG1992|consen 499 LLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGA 539 (960)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccch
Confidence 578899999999999999999999987665554 4445443
No 353
>PF00301 Rubredoxin: Rubredoxin; InterPro: IPR004039 Rubredoxin is a low molecular weight iron-containing bacterial protein involved in electron transfer [, ], sometimes replacing ferredoxin as an electron carrier []. The 3-D structures of a number of rubredoxins have been solved [, ]. The fold belongs to the alpha+beta class, with 2 alpha-helices and 2-3 beta-strands. Its active site contains an iron ion which is co-ordinated by the sulphurs of four conserved cysteine residues forming an almost regular tetrahedron. The conserved cysteines reside on two loops, which are the most conserved regions of the protein. In addition, a ring of acidic residues in the proximity of the [Fe(Cys)4] centre is also well-conserved []. ; GO: 0009055 electron carrier activity, 0046872 metal ion binding; PDB: 2RDV_C 1RDV_A 1S24_A 1T9O_B 1B2J_A 1SMW_A 2PVE_B 1BFY_A 1T9P_C 1C09_C ....
Probab=67.50 E-value=2.3 Score=28.03 Aligned_cols=13 Identities=23% Similarity=0.904 Sum_probs=8.2
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|.-
T Consensus 30 ~Lp~~w~CP~C~a 42 (47)
T PF00301_consen 30 DLPDDWVCPVCGA 42 (47)
T ss_dssp GS-TT-B-TTTSS
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999974
No 354
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=67.27 E-value=79 Score=33.38 Aligned_cols=107 Identities=18% Similarity=0.197 Sum_probs=73.2
Q ss_pred HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc--CchHHHHHHh----hcccchhHHHHHHHHHHHHhcC
Q 040073 229 FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG--GGVSVLVDLL----LDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 229 i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~--G~v~~Lv~lL----~~~~~~~~~~~al~~L~~L~~~ 302 (407)
...++.+|.++ +-..+...+.+..|+..+.....++++. --+..|+++| .+. ++-++-+|+.++..++.-
T Consensus 301 ~~~~~~LLdse---s~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~-~py~RtKalqv~~kifdl 376 (1128)
T COG5098 301 YEHFDELLDSE---SFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDT-YPYTRTKALQVLEKIFDL 376 (1128)
T ss_pred HHHHHHHhccc---chhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhcc-chHHHHHHHHHHHHHHhC
Confidence 56778889887 8888888889999987643333355552 1244455544 443 788999999999999863
Q ss_pred H----hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccC
Q 040073 303 A----EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 303 ~----~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~ 345 (407)
+ ..|.++.+ ..+..+.+.+..++.+|++++..+-...
T Consensus 377 ~sk~~~~r~ev~~------lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 377 NSKTVGRRHEVIR------LVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred cccccchHHHHHH------HHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 3 23444443 3455566667888999999888776544
No 355
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=67.17 E-value=19 Score=30.05 Aligned_cols=72 Identities=17% Similarity=0.099 Sum_probs=59.4
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.++..|...|.++ ++.++..|+..|-.+..+-. -...+.....+..|+.++....+..++++++..+...+.
T Consensus 37 ~a~ral~KRl~~~---n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 37 DCLKAIMKRLNHK---DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence 4688888888888 99999999999988887544 555667778999999999884478999999999988774
No 356
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=67.03 E-value=7.4 Score=33.55 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=20.9
Q ss_pred CCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
.++||.||..+...+ .......+.+.++.....
T Consensus 132 ~F~Cp~Cg~~L~~~d--~s~~i~~l~~~i~~l~~~ 164 (176)
T COG1675 132 GFTCPKCGEDLEEYD--SSEEIEELESELDELEEE 164 (176)
T ss_pred CCCCCCCCchhhhcc--chHHHHHHHHHHHHHHHH
Confidence 589999999886532 222345566666665544
No 357
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=66.97 E-value=3.4 Score=29.00 Aligned_cols=13 Identities=15% Similarity=0.465 Sum_probs=9.7
Q ss_pred cccHHHHHHHHhc
Q 040073 30 TYDRVNIERWLFT 42 (407)
Q Consensus 30 t~~r~~i~~~~~~ 42 (407)
-|||.|+.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999976
No 358
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=66.30 E-value=89 Score=27.19 Aligned_cols=142 Identities=20% Similarity=0.152 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHHhhh-Chh----HHHHHH-h-----cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhc
Q 040073 113 TGRKCLRRLRSITLQ-SER----NRSCLE-A-----AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVIN 181 (407)
Q Consensus 113 ~~~~al~~L~~l~~~-~~~----~r~~i~-~-----~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~ 181 (407)
.|..|+.+|..+++. ++. +...+. + ...-+.|+.++-.+... .++..|+.+|..|-.+....-....+
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~-kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSP-KVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCch-hHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 467788888888776 221 222222 1 22344455555443332 35888888887765433211111110
Q ss_pred cch-----------------hhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH----HcccC
Q 040073 182 NGE-----------------EFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN----VLRDH 239 (407)
Q Consensus 182 ~gg-----------------~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~----lL~~~ 239 (407)
..+ .....|+..|+.+ +........++|..|.....+.+.- .|.++.++. ++.+.
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~ 157 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHR 157 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcC
Confidence 010 1234666667664 7777888899999998877765532 355555554 45566
Q ss_pred CCCCHHHHHHHHHHHHHhCCCC
Q 040073 240 HQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 240 ~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
|++++..++.++..|.+..
T Consensus 158 ---d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 158 ---DPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred ---CCcHHHHHHHHHHHHHcCC
Confidence 7888888888888776643
No 359
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=65.98 E-value=4.7 Score=37.36 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=32.3
Q ss_pred ccCcccccc----CcCceecCCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 10 FLCPISLQL----MRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 10 ~~Cpi~~~~----~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
+-||||.+- +.+|..++|||+--..|.++.... +.+||.|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~--~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE--GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhcc--CCCCCcccc
Confidence 459999854 567888999999876666666543 489999977
No 360
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.79 E-value=4.2 Score=39.91 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=30.5
Q ss_pred cccCcccc-ccCcCce---ecCCcccccHHHHHHHHhcC----CCCCCcccccc
Q 040073 9 HFLCPISL-QLMRDPV---TVSTGITYDRVNIERWLFTC----KNNTCPVTKQV 54 (407)
Q Consensus 9 ~~~Cpi~~-~~~~dPv---~~~~g~t~~r~~i~~~~~~~----~~~~cP~~~~~ 54 (407)
...|+||. +.+...- +.-|||-||..|+.+++.-. ....||.-+.+
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~ 199 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCE 199 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCC
Confidence 36899999 3322212 45699999999999999732 13556654443
No 361
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=65.58 E-value=41 Score=27.53 Aligned_cols=71 Identities=8% Similarity=0.011 Sum_probs=55.6
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHh
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYH 167 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~ 167 (407)
...+..+.++|.+.+ .++..|+..|-.+.+.+ ......+...+++..|++++.+......+++.++..+..
T Consensus 36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~ 108 (133)
T smart00288 36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQE 108 (133)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 455778888998877 88999999999998884 557788888899999999998766533257777776655
No 362
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=65.27 E-value=4.4 Score=34.41 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
=+..|.||-|+. .| ...+... ..+.||.|+.++..
T Consensus 106 ~~~~Y~Cp~c~~------------r~---tf~eA~~--~~F~Cp~Cg~~L~~ 140 (158)
T TIGR00373 106 NNMFFICPNMCV------------RF---TFNEAME--LNFTCPRCGAMLDY 140 (158)
T ss_pred CCCeEECCCCCc------------Ee---eHHHHHH--cCCcCCCCCCEeee
Confidence 356778887653 33 2222232 27999999999865
No 363
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=65.24 E-value=1.4 Score=32.00 Aligned_cols=36 Identities=22% Similarity=0.533 Sum_probs=24.7
Q ss_pred CCCCccccccccccCCCCCCccHHH-HHHHHHHHHh-ccC
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTI-NAC 82 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~-~~~ 82 (407)
.+.||+|+..+.+ ++ .+...+++ |+.|+.|... +..
T Consensus 4 ~f~CpIt~~lM~d-PV-i~~~G~tyer~~I~~~l~~~~~~ 41 (73)
T PF04564_consen 4 EFLCPITGELMRD-PV-ILPSGHTYERSAIERWLEQNGGT 41 (73)
T ss_dssp GGB-TTTSSB-SS-EE-EETTSEEEEHHHHHHHHCTTSSB
T ss_pred ccCCcCcCcHhhC-ce-eCCcCCEEcHHHHHHHHHcCCCC
Confidence 4679999999887 54 33334555 8999999999 443
No 364
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.91 E-value=5.5 Score=41.74 Aligned_cols=40 Identities=5% Similarity=-0.145 Sum_probs=33.5
Q ss_pred CCCCCCcccCccccccCcCce----ecC---CcccccHHHHHHHHhc
Q 040073 3 EIEVPAHFLCPISLQLMRDPV----TVS---TGITYDRVNIERWLFT 42 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv----~~~---~g~t~~r~~i~~~~~~ 42 (407)
+..-++.-.|++|.--+.+|| +.+ |+|.||-.||..|..+
T Consensus 90 DeK~a~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~Dq 136 (1134)
T KOG0825|consen 90 DEKTAESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQ 136 (1134)
T ss_pred CcccccccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHH
Confidence 445677789999999999977 445 8999999999999875
No 365
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=64.72 E-value=4 Score=40.36 Aligned_cols=69 Identities=22% Similarity=0.338 Sum_probs=50.6
Q ss_pred CCCCcccCccc-cccCcCceec--CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073 5 EVPAHFLCPIS-LQLMRDPVTV--STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 5 ~~p~~~~Cpi~-~~~~~dPv~~--~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~ 78 (407)
..|++..||+| .+.|.|-+.+ +|+.+||-.||.+.+...+...|+.|.. +.. .+.++..++..+..-..
T Consensus 215 ~~~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l~~~~~~~c~~~~~-~~~----~~~~p~~~r~~~n~~~a 286 (448)
T KOG0314|consen 215 ELPEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDALISKSMCVCGASNV-LAD----DLLPPKTLRDTINRILA 286 (448)
T ss_pred cCCccccCceecchhhHHHHHhhhhhcccCCccccccccccccCCcchhhcc-ccc----ccCCchhhHHHHHHHHh
Confidence 57899999999 8999999988 5899999999999887543445666643 222 45666767666555433
No 366
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=64.14 E-value=42 Score=32.66 Aligned_cols=80 Identities=16% Similarity=0.220 Sum_probs=64.2
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..+.+.|.+.++.+.-.|+.+|-.+..+++. .++.++-.......|..++.+..-++++++-+.+++...+.+...|
T Consensus 46 ~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~-~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp 124 (462)
T KOG2199|consen 46 CLKAIMKRLNHKDPHVVLQALTLLDACVANCGK-RFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEFKKDP 124 (462)
T ss_pred HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcch-HHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence 566777777777889999999999999988765 4888888888888888888755678889998888888777666655
Q ss_pred C
Q 040073 395 C 395 (407)
Q Consensus 395 ~ 395 (407)
.
T Consensus 125 ~ 125 (462)
T KOG2199|consen 125 S 125 (462)
T ss_pred c
Confidence 3
No 367
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.15 E-value=94 Score=29.44 Aligned_cols=134 Identities=12% Similarity=0.134 Sum_probs=82.3
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r 306 (407)
++...+..|.++ +.+..-.++..|..|+..+. ....+.. ..|..+++-+++- ...+...|+.++..+...-.+.
T Consensus 89 al~~~l~~L~s~---dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~ 163 (334)
T KOG2933|consen 89 ALKQALKKLSSD---DWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNS 163 (334)
T ss_pred HHHHHHHHhchH---HHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455566667776 77888888888888887543 3333333 2566666667664 5677788888888887644333
Q ss_pred HHHHhccCchHHHHHH-HHcCC---chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHH
Q 040073 307 AELLKHGAGLAVVSKK-ILRVS---HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERARE 381 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~-l~~~s---~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~ 381 (407)
. .. ....++.. +.+.+ .-..+-|-.+|..+..+..- .-++++|+..++ +-.++++.+++.
T Consensus 164 i--~~---~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp---------~~~L~~L~~~~~-~~n~r~r~~a~~ 227 (334)
T KOG2933|consen 164 I--DQ---ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP---------QKLLRKLIPILQ-HSNPRVRAKAAL 227 (334)
T ss_pred H--HH---HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh---------HHHHHHHHHHHh-hhchhhhhhhhc
Confidence 2 22 12233333 33433 33578888888888864321 235666766676 447777777754
No 368
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=61.49 E-value=4.2 Score=26.60 Aligned_cols=32 Identities=13% Similarity=0.141 Sum_probs=21.8
Q ss_pred ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 24 TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 24 ~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+-++.|-.|..|+..-+.. +..||+|++++..
T Consensus 16 i~C~dHYLCl~CLt~ml~~--s~~C~iC~~~LPt 47 (50)
T PF03854_consen 16 IKCSDHYLCLNCLTLMLSR--SDRCPICGKPLPT 47 (50)
T ss_dssp EE-SS-EEEHHHHHHT-SS--SSEETTTTEE---
T ss_pred eeecchhHHHHHHHHHhcc--ccCCCcccCcCcc
Confidence 3456799999999998754 7889999998854
No 369
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=61.42 E-value=4.8 Score=22.84 Aligned_cols=9 Identities=22% Similarity=0.349 Sum_probs=4.9
Q ss_pred cCccccccC
Q 040073 11 LCPISLQLM 19 (407)
Q Consensus 11 ~Cpi~~~~~ 19 (407)
.||-|....
T Consensus 2 ~CP~C~~~V 10 (26)
T PF10571_consen 2 TCPECGAEV 10 (26)
T ss_pred cCCCCcCCc
Confidence 366666543
No 370
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=60.56 E-value=66 Score=32.65 Aligned_cols=119 Identities=14% Similarity=0.199 Sum_probs=66.5
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC--Cchhh---hhchhhhHHHHHHHcccCCCCCHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA--DPFQL---ISVKQEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~---i~~~~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
++.-.++....+ +++.+++.+.. +.+.. .|..|...+ +.... ...++++|+.|+.+|... .+.+.+
T Consensus 10 ~e~l~Fik~~~~-~v~~llkHI~~--~~ImD----lLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~--~~~~~q 80 (475)
T PF04499_consen 10 EEMLEFIKSQPN-FVDNLLKHIDT--PAIMD----LLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPS--YSSDVQ 80 (475)
T ss_pred HHHHHHHHhCcc-HHHHHHHhcCC--cHHHH----HHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCC--CCHHHH
Confidence 334455655443 67777666643 22222 333332222 22222 334578999999999855 578899
Q ss_pred HHHHHHHHHhCCCCc--------------hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 248 KAALKLLVELCPWGR--------------NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 248 ~~A~~aL~~L~~~~~--------------n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
.+|+..|..+..... --..++....|..|++.+..+........+++++-.|-
T Consensus 81 ~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI 147 (475)
T PF04499_consen 81 SNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELI 147 (475)
T ss_pred HHHHHHHHHHHHHhhccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 999887777643211 12334555667777766663112344456666666554
No 371
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=60.38 E-value=4.1 Score=34.15 Aligned_cols=20 Identities=20% Similarity=0.451 Sum_probs=17.4
Q ss_pred CcccCccccccCcCceecCC
Q 040073 8 AHFLCPISLQLMRDPVTVST 27 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~ 27 (407)
++.+||||++.-.+.|.|-|
T Consensus 1 ed~~CpICme~PHNAVLLlC 20 (162)
T PF07800_consen 1 EDVTCPICMEHPHNAVLLLC 20 (162)
T ss_pred CCccCceeccCCCceEEEEe
Confidence 47899999999999998854
No 372
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=60.31 E-value=1.7e+02 Score=28.45 Aligned_cols=93 Identities=12% Similarity=0.153 Sum_probs=56.2
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF 219 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~ 219 (407)
|..++.=|++..+ .-++..++--|+.-+.+.+ .+..+.+.| ....+++.+.. ++......++.++..+...+...
T Consensus 23 v~ylld~l~~~~~-~s~Rr~sll~La~K~~~~~-Fr~~~ra~g--~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~ 98 (361)
T PF07814_consen 23 VEYLLDGLESSSS-SSVRRSSLLELASKCADPQ-FRRQFRAHG--LVKRLFKALSDAPDDDILALATAAILYVLSRDGLN 98 (361)
T ss_pred HHHHHhhcccCCC-ccHHHHHHHHHHHHhCCHH-HHHHHHHcC--cHHHHHHHhccccchHHHHHHHHHHHHHHccCCcc
Confidence 4455555553333 2347777777777676664 566666665 78999988854 44435555655665554444444
Q ss_pred hhhhchhhhHHHHHHHcc
Q 040073 220 QLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 220 ~~i~~~~g~i~~Lv~lL~ 237 (407)
..+....+....++.++.
T Consensus 99 ~~l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 99 MHLLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhhhchhHHHHHHHHhc
Confidence 444444456666688887
No 373
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.78 E-value=2.5e+02 Score=30.17 Aligned_cols=248 Identities=14% Similarity=0.185 Sum_probs=122.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh--------HHHhHhhccc
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES--------YLKSIVINNG 183 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~--------~~~~~i~~~g 183 (407)
-...+|+..+..+..... |.. .. ++..|--+++++.. ..+..|+++|..+++..+ +...+|...+
T Consensus 260 mV~~EaArai~~l~~~~~--r~l-~p--avs~Lq~flssp~~--~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~N 332 (865)
T KOG1078|consen 260 MVIYEAARAIVSLPNTNS--REL-AP--AVSVLQLFLSSPKV--ALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSN 332 (865)
T ss_pred HHHHHHHHHHhhccccCH--hhc-ch--HHHHHHHHhcCcHH--HHHHHHHHHHHHHHHhCCccccccchhHHhhhcccc
Confidence 566778888888754422 222 22 56666666666655 358888888887765432 1233343322
Q ss_pred hhhH--HHHHHHHhcCChhHHHHHHHHHHHhhcc--CCchhhhh------------chhhhHHHHHHHcccCCCCCHHHH
Q 040073 184 EEFL--ESLMRVLKCGNYQSRSYAIMLLKSIFEV--ADPFQLIS------------VKQEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 184 g~~i--~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~------------~~~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
..| ..+..+|+.|+.........-+.+...+ ++++..+. ...+.+..|.++|++++ .-+-+
T Consensus 333 -rsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG--g~e~K 409 (865)
T KOG1078|consen 333 -RSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG--GFEFK 409 (865)
T ss_pred -cchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc--CchHH
Confidence 122 3445677777666555555544444321 22222111 11233444445554431 34444
Q ss_pred HHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073 248 KAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 248 ~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
++...++..+.. +++.|.. ++..|...+.+. +...-+..+|..|-... -..... ..-|......+.=.
T Consensus 410 ~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDc---e~~~i~~rILhlLG~Eg--P~a~~P-skyir~iyNRviLE 478 (865)
T KOG1078|consen 410 RAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDC---EFTQIAVRILHLLGKEG--PKAPNP-SKYIRFIYNRVILE 478 (865)
T ss_pred HHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhc---cchHHHHHHHHHHhccC--CCCCCc-chhhHHHhhhhhhh
Confidence 455555444433 2333322 234444444433 33344455555543211 000000 11122222211112
Q ss_pred CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 327 SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 327 s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+...+..|+.+|..+...... .+. -....|-+.+. +.++..|++|.-.|+.+..
T Consensus 479 n~ivRaaAv~alaKfg~~~~~--l~~-----sI~vllkRc~~-D~DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 479 NAIVRAAAVSALAKFGAQDVV--LLP-----SILVLLKRCLN-DSDDEVRDRATFYLKNLEE 532 (865)
T ss_pred hhhhHHHHHHHHHHHhcCCCC--ccc-----cHHHHHHHHhc-CchHHHHHHHHHHHHHhhh
Confidence 455677778888887743221 122 33445555565 6689999999999999874
No 374
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=59.72 E-value=93 Score=28.81 Aligned_cols=145 Identities=15% Similarity=0.156 Sum_probs=86.3
Q ss_pred HHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHhcCHhhHHHH
Q 040073 232 IVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLCRCAEGRAEL 309 (407)
Q Consensus 232 Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~~~~~~r~~i 309 (407)
|=..|.++ ++..+..|+..|...... +.+. ....-|..|++.+.+. .|......++..|..|.....-..
T Consensus 4 Lg~~Ltse---d~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~-- 75 (262)
T PF14500_consen 4 LGEYLTSE---DPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP-- 75 (262)
T ss_pred hhhhhCCC---CHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh--
Confidence 34456666 888999998888876542 2221 2222356666655443 244555556777777764332111
Q ss_pred HhccCchHHHHHHHHc-C-----CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 310 LKHGAGLAVVSKKILR-V-----SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~-~-----s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
+.+..+++.+.+ . ....+..+..+|..+..+..+ ....+ ..+.+..++.++....+|+.--.+.+++
T Consensus 76 ----~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~--~l~~~-~~~fv~~~i~~~~gEkDPRnLl~~F~l~ 148 (262)
T PF14500_consen 76 ----ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHRE--ALQSM-GDDFVYGFIQLIDGEKDPRNLLLSFKLL 148 (262)
T ss_pred ----hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHH--HHHhc-hhHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 112233333322 1 245677777888888754322 12222 2367778888888778999999999999
Q ss_pred HHHHhhcc
Q 040073 384 KLNARAWR 391 (407)
Q Consensus 384 ~~l~~~~~ 391 (407)
+.+.+.|.
T Consensus 149 ~~i~~~~~ 156 (262)
T PF14500_consen 149 KVILQEFD 156 (262)
T ss_pred HHHHHhcc
Confidence 99887665
No 375
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=59.65 E-value=1.3e+02 Score=32.27 Aligned_cols=125 Identities=17% Similarity=0.183 Sum_probs=81.7
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh-cCHhh
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC-RCAEG 305 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~-~~~~~ 305 (407)
.+|..|..+-.+. =.+++..|+.++++|..+.+-... ..+-.||.-|.+. +..+...|.-.|..|. .++.-
T Consensus 304 rfievLe~lS~D~---L~~vk~raL~ti~~lL~~kPEqE~----~LL~~lVNKlGDp-qnKiaskAsylL~~L~~~HPnM 375 (988)
T KOG2038|consen 304 RFIEVLEELSKDP---LEEVKKRALKTIYDLLTNKPEQEN----NLLVLLVNKLGDP-QNKIASKASYLLEGLLAKHPNM 375 (988)
T ss_pred HHHHHHHHHcccc---HHHHHHHHHHHHHHHHhCCcHHHH----HHHHHHHHhcCCc-chhhhhhHHHHHHHHHhhCCcc
Confidence 4566666666665 678999999999998876554332 3455666777664 5677777777777654 46655
Q ss_pred HHHHHhccCchHHHHHHHHcC--CchhhHHHHHHHHHHhccCCchHHHHHHHH--hChHHHHHH
Q 040073 306 RAELLKHGAGLAVVSKKILRV--SHAASDRAVRILCSVCKFSATARVLQEMLQ--VGVVSKLCL 365 (407)
Q Consensus 306 r~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~--~g~i~~Ll~ 365 (407)
|..++. .+..++.+. +.+++-+|+..|..+.-...+..++...+. .-.+..++.
T Consensus 376 K~Vvi~------EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~iYF~lFk~l~~ 433 (988)
T KOG2038|consen 376 KIVVID------EIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLISIYFSLFKTLVG 433 (988)
T ss_pred eeehHH------HHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHHHHHHHHHHHHH
Confidence 543333 344556665 578899999999888765555556666554 244444443
No 376
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=59.45 E-value=1.2e+02 Score=26.37 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=83.6
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhh
Q 040073 142 EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQL 221 (407)
Q Consensus 142 ~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 221 (407)
+.++++..+.+. .++..|+.++.... ...++.-. ..+|.|+.+..+++..++..|...+..+.+..+.-..
T Consensus 11 ~~Il~~~~~~~~--~vr~~Al~~l~~il-----~qGLvnP~--~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 11 KNILELCLSSDD--SVRLAALQVLELIL-----RQGLVNPK--QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHhCCCH--HHHHHHHHHHHHHH-----hcCCCChH--HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 344444444443 35777777765532 23334322 4899999999999999999999999999876665433
Q ss_pred hhchhhhHHHHHHHcc---cCCCCCHHH---HHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhccc-------chh
Q 040073 222 ISVKQEFFTEIVNVLR---DHHQFSQQA---SKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVT-------ERR 287 (407)
Q Consensus 222 i~~~~g~i~~Lv~lL~---~~~~~~~~~---~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~-------~~~ 287 (407)
.....| +..-.++-+ .+ ..... ....+.-|+.+.. +..+|..+ +..|++.+.... ...
T Consensus 82 ~~~~~g-i~~af~~~~~l~~~--~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~ 153 (187)
T PF12830_consen 82 SRYSEG-IRLAFDYQRRLSSD--SRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPS 153 (187)
T ss_pred HHHHHH-HHHHHHHHHHhcCC--ccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchh
Confidence 333233 444443322 11 01111 5556777777776 34466665 556666665531 122
Q ss_pred HHHHHHHHHHHHhcCH
Q 040073 288 VCELMLNVLDLLCRCA 303 (407)
Q Consensus 288 ~~~~al~~L~~L~~~~ 303 (407)
-.....-+..+|+.-+
T Consensus 154 ~l~~~~Fla~nLA~l~ 169 (187)
T PF12830_consen 154 DLDFLLFLAENLATLP 169 (187)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 3344555566666533
No 377
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=58.40 E-value=37 Score=28.02 Aligned_cols=71 Identities=13% Similarity=0.143 Sum_probs=55.1
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCCCCc--hHHHHHHHHHh
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDAGSD--ECDEALSILYH 167 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~~--~~~~a~~~L~~ 167 (407)
...+..+.++|.+.+ ..+..|+..|-.+.+.+ +..+..+....++..|.+++.+...... +++.++..|..
T Consensus 41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~ 115 (140)
T PF00790_consen 41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQE 115 (140)
T ss_dssp HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHH
Confidence 345667788888877 88999999999999886 5677888888889999998887665322 57777776655
No 378
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=58.27 E-value=2.4e+02 Score=29.49 Aligned_cols=230 Identities=16% Similarity=0.174 Sum_probs=108.8
Q ss_pred hHHHHHHHhcCCChHHHHHHHHHHHHhhhC---hhHH----HHHHhcCc---HHHHHHHhhccCCCCchHHHHHHHHHhc
Q 040073 99 QIVKILNDAKKSPSTGRKCLRRLRSITLQS---ERNR----SCLEAAGA---IEFLATIITKSDAGSDECDEALSILYHL 168 (407)
Q Consensus 99 ~i~~ll~~L~~~~~~~~~al~~L~~l~~~~---~~~r----~~i~~~G~---i~~Lv~lL~~~~~~~~~~~~a~~~L~~L 168 (407)
.+-.|++.+..-+ ...+..+..-.... ...| +.+...|- +..+.+++.+..-+ -.+|..+|..|
T Consensus 348 ~f~~Lv~~lr~l~---~~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~---~~ea~~~l~~l 421 (618)
T PF01347_consen 348 KFSRLVRLLRTLS---YEDLEELYKQLKSKSKKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLT---DDEAAQLLASL 421 (618)
T ss_dssp HHHHHHHHHTTS----HHHHHHHHHHHTTS---HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S----HHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHhhccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCC---HHHHHHHHHHH
Confidence 4566666665543 12233333322222 2333 44444554 55566666664431 34455555554
Q ss_pred CCCh-hHHHhHhhccchhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCch----------hhhhchhhhHHHHH
Q 040073 169 NVSE-SYLKSIVINNGEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPF----------QLISVKQEFFTEIV 233 (407)
Q Consensus 169 ~~~~-~~~~~~i~~~gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~----------~~i~~~~g~i~~Lv 233 (407)
...- .-..++ +..+..++++ .+..++..|...+..+....... .... ...+++.|.
T Consensus 422 ~~~~~~Pt~e~--------l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~-~~~~~~~l~ 492 (618)
T PF01347_consen 422 PFHVRRPTEEL--------LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCI-IEKYVPYLE 492 (618)
T ss_dssp HHT-----HHH--------HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS---GGGTHHHH
T ss_pred HhhcCCCCHHH--------HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhh-HHHHHHHHH
Confidence 4332 112333 3334444432 45667777777777664321111 1111 134667777
Q ss_pred HHcc----cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc--cchhHHHHHHHHHHHHhcCHhhHH
Q 040073 234 NVLR----DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV--TERRVCELMLNVLDLLCRCAEGRA 307 (407)
Q Consensus 234 ~lL~----~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~L~~~~~~r~ 307 (407)
..|. .+ +.+-+..++.||.|+.. ...++.|...+.+. .+..++..|+.+|..++.... .
T Consensus 493 ~~l~~~~~~~---~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~--~ 557 (618)
T PF01347_consen 493 QELKEAVSRG---DEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCP--E 557 (618)
T ss_dssp HHHHHHHHTT----HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-H--H
T ss_pred HHHHHHhhcc---CHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCc--H
Confidence 7666 23 66788889999999853 12566666666554 146777788888887755332 1
Q ss_pred HHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHH
Q 040073 308 ELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTK 376 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k 376 (407)
.+ .+.++.++.+.+ .+.+-.|..+|.. ..++. ..+..+...+..+.+..+.
T Consensus 558 ~v------~~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~---------~~l~~i~~~l~~E~~~QV~ 610 (618)
T PF01347_consen 558 KV------REILLPIFMNTTEDPEVRIAAYLILMR---CNPSP---------SVLQRIAQSLWNEPSNQVA 610 (618)
T ss_dssp HH------HHHHHHHHH-TTS-HHHHHHHHHHHHH---T---H---------HHHHHHHHHHTT-S-HHHH
T ss_pred HH------HHHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH---------HHHHHHHHHHhhCchHHHH
Confidence 22 235566555544 3334333333322 22331 2455666666654444443
No 379
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=57.87 E-value=1.6e+02 Score=27.31 Aligned_cols=202 Identities=18% Similarity=0.105 Sum_probs=110.1
Q ss_pred cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
..+++.|+..|...+....++-+|..+|..+- .. . ..+.+-++.+..-..+++-+..++..+--.+.
T Consensus 66 ~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~-~-----------~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~ 132 (289)
T KOG0567|consen 66 EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP-E-----------SLEILTKYIKDPCKEVRETCELAIKRLEWKDI 132 (289)
T ss_pred chhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch-h-----------hHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence 45677777777766553335666777776544 11 1 23333344444445555544455544421110
Q ss_pred ------chhhhhc------hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccc
Q 040073 218 ------PFQLISV------KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTE 285 (407)
Q Consensus 218 ------~~~~i~~------~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~ 285 (407)
....... ..+-+..|-..|.+.. ...--+..|.-.|+|+-. +.+|.+|++-|..+ +
T Consensus 133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t-~~l~~Ry~amF~LRn~g~----------EeaI~al~~~l~~~-S 200 (289)
T KOG0567|consen 133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDET-KPLFERYRAMFYLRNIGT----------EEAINALIDGLADD-S 200 (289)
T ss_pred cccccccCccccCCCCCccccccHHHHHHHHHhcc-hhHHHHHhhhhHhhccCc----------HHHHHHHHHhcccc-h
Confidence 0000000 0112444444443330 011123333444444311 12455666666554 5
Q ss_pred hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHH
Q 040073 286 RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKL 363 (407)
Q Consensus 286 ~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~L 363 (407)
.-.+-.++.+|..|-. ...||.|.+.|.+.. +-.+..|+.+|..++. + .+++.|
T Consensus 201 alfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e----------~~~~vL 256 (289)
T KOG0567|consen 201 ALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD---E----------DCVEVL 256 (289)
T ss_pred HHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---H----------HHHHHH
Confidence 6667777777766532 346899999887764 6778889999999984 2 255667
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 364 CLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 364 l~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.+++. +..+.+++-+...|.++...
T Consensus 257 ~e~~~-D~~~vv~esc~valdm~eye 281 (289)
T KOG0567|consen 257 KEYLG-DEERVVRESCEVALDMLEYE 281 (289)
T ss_pred HHHcC-CcHHHHHHHHHHHHHHHHHh
Confidence 77776 55788888888888876543
No 380
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=57.62 E-value=6 Score=32.30 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=31.8
Q ss_pred cccCccccccCcC--ce-ecCCcc------cccHHHHHHHHhcCCCCCCcccccc
Q 040073 9 HFLCPISLQLMRD--PV-TVSTGI------TYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 9 ~~~Cpi~~~~~~d--Pv-~~~~g~------t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
..-|.||.+-..+ =| .+++|- -||..|+++|-.+ ....|.=+..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~--~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE--RNRDPFNRNI 78 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh--ccCCCcccce
Confidence 5679999988777 54 346664 4999999999643 5566776654
No 381
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=57.60 E-value=8.1 Score=38.81 Aligned_cols=36 Identities=14% Similarity=0.181 Sum_probs=30.7
Q ss_pred CCcccCccccccCcC-ceecCCcccccHHHHHHHHhc
Q 040073 7 PAHFLCPISLQLMRD-PVTVSTGITYDRVNIERWLFT 42 (407)
Q Consensus 7 p~~~~Cpi~~~~~~d-Pv~~~~g~t~~r~~i~~~~~~ 42 (407)
.....|.||.+-..+ .+.+.|||.||..|...++..
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 345899999998885 667789999999999999976
No 382
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=56.99 E-value=5.6 Score=34.95 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=35.2
Q ss_pred cCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 11 LCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
.|.+|..+.-.=+.- .||..|-+.|+..++.+ ...||.|+.-.+
T Consensus 183 ~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~--~~~cphc~d~w~ 227 (235)
T KOG4718|consen 183 NCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR--RDICPHCGDLWT 227 (235)
T ss_pred HHhHhHHHhheeeccCcccchhhhHHHHHHhcc--cCcCCchhcccC
Confidence 799999887666544 58889999999999975 778999976443
No 383
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=56.85 E-value=2.2e+02 Score=28.64 Aligned_cols=184 Identities=17% Similarity=0.148 Sum_probs=103.1
Q ss_pred HHHHHHHhhccCCC--CchHHHHHH-HHHhcCCChhHHH-hHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhcc
Q 040073 141 IEFLATIITKSDAG--SDECDEALS-ILYHLNVSESYLK-SIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEV 215 (407)
Q Consensus 141 i~~Lv~lL~~~~~~--~~~~~~a~~-~L~~L~~~~~~~~-~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~ 215 (407)
++.+.++|...+.+ ...++.|+. +...++.+..... +.+. ..+..+++.|.. .+...+..|.++|..++..
T Consensus 285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~----~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~ 360 (516)
T KOG2956|consen 285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA----EILLLLLEVLSDSEDEIIKKLALRVLREMLTN 360 (516)
T ss_pred hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH----HHHHHHHHHHccchhhHHHHHHHHHHHHHHHh
Confidence 34444555433221 123667776 4444554433222 2222 256778888987 6788889999999998765
Q ss_pred CCchhhhhchh-hhHHHHHHHcccCCCCCHHHHHHHHH-HHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHH
Q 040073 216 ADPFQLISVKQ-EFFTEIVNVLRDHHQFSQQASKAALK-LLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELML 293 (407)
Q Consensus 216 ~~~~~~i~~~~-g~i~~Lv~lL~~~~~~~~~~~~~A~~-aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al 293 (407)
... .+..+. -+|.-+++.-.+. ++++...|.. ++.-++++.+-+.. ..+..++... |......++
T Consensus 361 Q~~--~l~DstE~ai~K~Leaa~ds---~~~v~~~Aeed~~~~las~~P~~~I-------~~i~~~Ilt~-D~~~~~~~i 427 (516)
T KOG2956|consen 361 QPA--RLFDSTEIAICKVLEAAKDS---QDEVMRVAEEDCLTTLASHLPLQCI-------VNISPLILTA-DEPRAVAVI 427 (516)
T ss_pred chH--hhhchHHHHHHHHHHHHhCC---chhHHHHHHHHHHHHHHhhCchhHH-------HHHhhHHhcC-cchHHHHHH
Confidence 432 233322 2444455555555 6666666654 45556665543321 2222333332 444444555
Q ss_pred HHHHHHhc--CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 294 NVLDLLCR--CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 294 ~~L~~L~~--~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
..+..+.. ..+.-..++. ...|.+++.-.+.+..+++.|+-+|..+..
T Consensus 428 Km~Tkl~e~l~~EeL~~ll~--diaP~~iqay~S~SS~VRKtaVfCLVamv~ 477 (516)
T KOG2956|consen 428 KMLTKLFERLSAEELLNLLP--DIAPCVIQAYDSTSSTVRKTAVFCLVAMVN 477 (516)
T ss_pred HHHHHHHhhcCHHHHHHhhh--hhhhHHHHHhcCchHHhhhhHHHhHHHHHH
Confidence 55666655 2333444444 367888887666678888889888877774
No 384
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=56.64 E-value=74 Score=26.69 Aligned_cols=30 Identities=10% Similarity=0.176 Sum_probs=21.9
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
-|.+||++|.+. +.++...|+.+|.+-..-
T Consensus 95 NV~~LI~~L~~~---d~~lA~~Aa~aLk~TlLv 124 (154)
T PF11791_consen 95 NVQPLIDLLKSD---DEELAEEAAEALKNTLLV 124 (154)
T ss_dssp THHHHHHGG--G----TTTHHHHHHHHHT--TT
T ss_pred cHHHHHHHHcCC---cHHHHHHHHHHHHhhHHH
Confidence 489999999887 889999999999986553
No 385
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=56.61 E-value=61 Score=25.50 Aligned_cols=71 Identities=21% Similarity=0.209 Sum_probs=50.9
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh-----cCCCHHHHHHHHHHHHHH
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ-----VDASVKTKERAREILKLN 386 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~-----~~~~~~~k~~A~~lL~~l 386 (407)
.+..|.+.|.+.++..+-.|+.+|-.+..+.+. .+..++.+...+..++.+.. .+....+|+++..+++..
T Consensus 38 ~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~-~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 38 AVDAIKKRINNKNPHVVLKALTLLEYCVKNCGE-RFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccH-HHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 345666666666788899999999999988765 47777777776666655311 123788899999888764
No 386
>KOG2152 consensus Sister chromatid cohesion protein [Cell cycle control, cell division, chromosome partitioning]
Probab=55.70 E-value=2.3e+02 Score=30.22 Aligned_cols=196 Identities=17% Similarity=0.162 Sum_probs=106.3
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
++..++..+.+.. .....++..|..-.+- .+..|..++..|++..+.+.|.+.......-..+..+++.|....- +.
T Consensus 333 d~~yiLStlq~~~~~m~trCLSaISla~Kc~~p~FR~~lRa~G~v~~vfkalmDs~~~d~Lsl~tsalMylLs~d~l-nm 411 (865)
T KOG2152|consen 333 DLEYILSTLQSALLPMETRCLSAISLADKCVMPDFRMHLRAHGMVDAVFKALMDSHEDDLLSLCTSALMYLLSRDKL-NM 411 (865)
T ss_pred hHHHHHhhhhhccccHHHHHHhhhhhhhhccChHHHHHHHHcccHHHHHHHHhccccchhhHHHHHHHHHHHhhhhh-cc
Confidence 4556666666553 4445555555443332 5889999999999999999998655422222222234444443221 11
Q ss_pred hHhhccchhhHHHHHHHHhc----CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCC--------CCCH
Q 040073 177 SIVINNGEEFLESLMRVLKC----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHH--------QFSQ 244 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~--------~~~~ 244 (407)
+ +... .++.++++|.- ++.+.+..-...+.. .|..|.+....++ +.+.
T Consensus 412 d-ldf~---Slelmi~LL~~ek~~gS~e~~~~~~n~~~e----------------vir~L~e~~~~gG~~~h~n~~~~t~ 471 (865)
T KOG2152|consen 412 D-LDFL---SLELMIHLLRLEKFEGSHESRDKFTNLVKE----------------VIRSLCELQLRGGQKVHLNMRNETL 471 (865)
T ss_pred c-ccch---hHHHHHHHHhhhcccCChhhHHHHHHHHHH----------------HHHHHHHHHHhcCCcccccccCCCC
Confidence 1 1111 36777888752 455555322222111 2233332222110 0011
Q ss_pred HHHHHHHHH-HHHhCCC---CchHHHHHhcCchHHHHHHhhccc--------c---hhHHHHHHHHHHHHhc-CHhhHHH
Q 040073 245 QASKAALKL-LVELCPW---GRNRIKAVEGGGVSVLVDLLLDVT--------E---RRVCELMLNVLDLLCR-CAEGRAE 308 (407)
Q Consensus 245 ~~~~~A~~a-L~~L~~~---~~n~~~~v~~G~v~~Lv~lL~~~~--------~---~~~~~~al~~L~~L~~-~~~~r~~ 308 (407)
.-...+..+ +..|++. +..+..+...|+...++..+.... + ....+.++.+|.+.+. ++.++..
T Consensus 472 ~~~~lamet~vl~lsSk~~~d~~k~elr~Lg~lq~iv~~i~~~~~~~~~~~~e~~~~~tL~rC~rvles~s~hn~snq~y 551 (865)
T KOG2152|consen 472 GPSSLAMETLVLILSSKRAGDWFKSELRNLGGLQHIVSKIETNVSPTSDNGDESSVILTLERCLRVLESVSVHNGSNQGY 551 (865)
T ss_pred CchhhhhheeEEEEeccccchhHHHHHHhcchHHHHHHHHHhccCcCCCCcchhhHHHhHHHHHHHhhcccccCcchhHH
Confidence 122355555 4445542 336777888899999998877531 1 1233788889988887 5667766
Q ss_pred HHhccCc
Q 040073 309 LLKHGAG 315 (407)
Q Consensus 309 i~~~~g~ 315 (407)
++..+.|
T Consensus 552 Lis~gs~ 558 (865)
T KOG2152|consen 552 LISLGSG 558 (865)
T ss_pred HHhccCC
Confidence 7665444
No 387
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=55.68 E-value=47 Score=31.85 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-------cCc
Q 040073 201 SRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-------GGG 272 (407)
Q Consensus 201 ~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-------~G~ 272 (407)
+|-.|...+.++....+....++. +.+++..|+++++.+......++..|+.+|-.++....-...++. .|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 445566666665544444444444 234899999999865446789999999999999986553333332 355
Q ss_pred hHHHHH
Q 040073 273 VSVLVD 278 (407)
Q Consensus 273 v~~Lv~ 278 (407)
++.++.
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 555554
No 388
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=55.60 E-value=82 Score=26.07 Aligned_cols=71 Identities=11% Similarity=0.154 Sum_probs=54.3
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhcc----CCCCchHHHHHHHHHh
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKS----DAGSDECDEALSILYH 167 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~----~~~~~~~~~a~~~L~~ 167 (407)
...+..+.++|.+.+ .++..||..|-.+.+.+ ......+...+++.-|++++... ..+..+++..+..+..
T Consensus 37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~ 113 (139)
T cd03567 37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYS 113 (139)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHH
Confidence 356778888998887 88899999999998874 55778888899999999999642 1223467777776655
No 389
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=54.94 E-value=10 Score=29.87 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=6.3
Q ss_pred CCCCccccccc
Q 040073 45 NNTCPVTKQVL 55 (407)
Q Consensus 45 ~~~cP~~~~~~ 55 (407)
.-+||.|+..+
T Consensus 26 PivCP~CG~~~ 36 (108)
T PF09538_consen 26 PIVCPKCGTEF 36 (108)
T ss_pred CccCCCCCCcc
Confidence 34566666554
No 390
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=54.62 E-value=2.7e+02 Score=28.95 Aligned_cols=71 Identities=14% Similarity=-0.039 Sum_probs=50.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
..|.|-..|++.-..+...+++++..++...-... . . +..+..|-.+|+.. ....+=.|++.|-.|+...+
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~-~-~-~~~vs~L~~fL~s~---rv~~rFsA~Riln~lam~~P 335 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQ-F-V-DQTVSSLRTFLKST---RVVLRFSAMRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHH-H-H-HHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhhCC
Confidence 46677777777666777888888888875442211 1 1 23577777888776 77888899999999987544
No 391
>PLN03086 PRLI-interacting factor K; Provisional
Probab=54.12 E-value=13 Score=38.23 Aligned_cols=52 Identities=17% Similarity=0.360 Sum_probs=30.4
Q ss_pred CCCCcccCccccccCc------------CceecCCcccccHHHHHHHHhcC---CCCCCcccccccc
Q 040073 5 EVPAHFLCPISLQLMR------------DPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQ 56 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~------------dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~ 56 (407)
+++..+.|+.|++.|. -|+.-+||..+.|..+.++.... ....|+.|+..+.
T Consensus 449 el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv~CpCg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 449 EAKNHVHCEKCGQAFQQGEMEKHMKVFHEPLQCPCGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred ccccCccCCCCCCccchHHHHHHHHhcCCCccCCCCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 3456677777766553 24444477777777776665421 2345777766553
No 392
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=53.71 E-value=2.8e+02 Score=28.90 Aligned_cols=101 Identities=17% Similarity=0.207 Sum_probs=68.3
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.+..+++-+.+.+..+|-+.+.+|..++..-..-... ...|.+..|-+.+-+. .+.++..|..+|..+-....|-.
T Consensus 92 ~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~-l~N~L~ekl~~R~~DR---E~~VR~eAv~~L~~~Qe~~~nee 167 (885)
T COG5218 92 TFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEV-LANGLLEKLSERLFDR---EKAVRREAVKVLCYYQEMELNEE 167 (885)
T ss_pred HHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHH-HHHHHHHHHHHHHhcc---hHHHHHHHHHHHHHHHhccCChH
Confidence 7888888888899999999999999887432221112 2246777777666666 68899999999998765333322
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHH
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLN 294 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~ 294 (407)
.. .+..|+.++...++.+++..|+.
T Consensus 168 n~----~~n~l~~~vqnDPS~EVRr~all 192 (885)
T COG5218 168 NR----IVNLLKDIVQNDPSDEVRRLALL 192 (885)
T ss_pred HH----HHHHHHHHHhcCcHHHHHHHHHH
Confidence 21 23467777777656677665543
No 393
>PRK05978 hypothetical protein; Provisional
Probab=52.59 E-value=7.5 Score=32.52 Aligned_cols=12 Identities=8% Similarity=0.301 Sum_probs=5.8
Q ss_pred CCCCcccccccc
Q 040073 45 NNTCPVTKQVLQ 56 (407)
Q Consensus 45 ~~~cP~~~~~~~ 56 (407)
+..||.|++.+.
T Consensus 52 ~~~C~~CG~~~~ 63 (148)
T PRK05978 52 VDHCAACGEDFT 63 (148)
T ss_pred CCCccccCCccc
Confidence 444555555443
No 394
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=51.63 E-value=9.8 Score=35.95 Aligned_cols=49 Identities=12% Similarity=0.133 Sum_probs=37.2
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
.++-.|-||.+-..=--.+||||..|..|--+.-.--..+.||.|+..-
T Consensus 59 Een~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~ 107 (493)
T COG5236 59 EENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTET 107 (493)
T ss_pred cccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence 3457899999888777789999999999976632211257899998653
No 395
>PHA03096 p28-like protein; Provisional
Probab=51.44 E-value=9 Score=35.85 Aligned_cols=44 Identities=16% Similarity=0.371 Sum_probs=29.4
Q ss_pred ccCccccccCcC-ce------ec-CCcccccHHHHHHHHhcC-CCCCCccccc
Q 040073 10 FLCPISLQLMRD-PV------TV-STGITYDRVNIERWLFTC-KNNTCPVTKQ 53 (407)
Q Consensus 10 ~~Cpi~~~~~~d-Pv------~~-~~g~t~~r~~i~~~~~~~-~~~~cP~~~~ 53 (407)
-.|-||++.-.+ |+ ++ .|.|+||-.||..|-.+. ....||.|+.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 358888864332 11 33 599999999999998763 1345666644
No 396
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.39 E-value=4.6e+02 Score=30.67 Aligned_cols=188 Identities=9% Similarity=0.137 Sum_probs=98.2
Q ss_pred hHHHHHHHHhcC-ChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--C
Q 040073 186 FLESLMRVLKCG-NYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--G 261 (407)
Q Consensus 186 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~ 261 (407)
.+|.+.++++++ ...+|.-++..+..|+.-- ...... .+..+.+|+..+++. +..+++.-+.|...|... +
T Consensus 1236 lip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~--sgKll~al~~g~~dR---Nesv~kafAsAmG~L~k~Ss~ 1310 (1702)
T KOG0915|consen 1236 LIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPY--SGKLLRALFPGAKDR---NESVRKAFASAMGYLAKFSSP 1310 (1702)
T ss_pred HHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcc--hhHHHHHHhhccccc---cHHHHHHHHHHHHHHHhcCCh
Confidence 567777777765 6667777777777765321 111111 123677888888887 899999888888888763 2
Q ss_pred chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH-HHHHH
Q 040073 262 RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV-RILCS 340 (407)
Q Consensus 262 ~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~-~~L~~ 340 (407)
+...++ +..++..+... .+.....+++++.+++.+...+ +-+++..|-+++-+-.....+..+.-+ .+...
T Consensus 1311 dq~qKL-----ie~~l~~~l~k-~es~~siscatis~Ian~s~e~--Lkn~asaILPLiFLa~~ee~Ka~q~Lw~dvW~e 1382 (1702)
T KOG0915|consen 1311 DQMQKL-----IETLLADLLGK-DESLKSISCATISNIANYSQEM--LKNYASAILPLIFLAMHEEEKANQELWNDVWAE 1382 (1702)
T ss_pred HHHHHH-----HHHHHHHHhcc-CCCccchhHHHHHHHHHhhHHH--HHhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 233333 33444433332 2333366777777777655333 333333444444422222212211111 12222
Q ss_pred HhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 341 VCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 341 l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+...... ........++-++.+-..++.+=+.|.-++..++.++.-
T Consensus 1383 ~vsggag---tvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~ 1428 (1702)
T KOG0915|consen 1383 LVSGGAG---TVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEG 1428 (1702)
T ss_pred hCCCCcc---hhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccc
Confidence 3322111 121122233334444333344567788888888877663
No 397
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=51.27 E-value=11 Score=30.41 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=7.3
Q ss_pred CCcccCccccccC
Q 040073 7 PAHFLCPISLQLM 19 (407)
Q Consensus 7 p~~~~Cpi~~~~~ 19 (407)
-....||-|+.-|
T Consensus 7 GtKr~Cp~cg~kF 19 (129)
T TIGR02300 7 GTKRICPNTGSKF 19 (129)
T ss_pred CccccCCCcCccc
Confidence 3345677666544
No 398
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=51.24 E-value=57 Score=28.81 Aligned_cols=120 Identities=17% Similarity=0.207 Sum_probs=47.0
Q ss_pred hhHHHHHHhcCcHHHHHHHhhccCCCC----------------chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHH
Q 040073 129 ERNRSCLEAAGAIEFLATIITKSDAGS----------------DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR 192 (407)
Q Consensus 129 ~~~r~~i~~~G~i~~Lv~lL~~~~~~~----------------~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~ 192 (407)
..+++.+...|++..++.+|..+.... .+...+...|..++.++..++..+.+ .++.++.
T Consensus 33 ~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~----~~~~l~~ 108 (207)
T PF01365_consen 33 RERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFK----HLDFLIS 108 (207)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHH----HHH----
T ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH----HHhHHHH
Confidence 467788888999999999998754421 23556667777777777767666654 3554444
Q ss_pred HHhcCChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 193 VLKCGNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 193 lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
.+.......-..+..+|..+-.++. -...+.. ..|..+++++... . -...-+..|..|+.
T Consensus 109 ~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e--~~I~~~i~ll~~~---g--r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 109 IFMQLQIGYGLGALDVLTEIFRDNPELCESISE--EHIEKFIELLRKH---G--RQPRYLDFLSSLCV 169 (207)
T ss_dssp -HHCCCH-TTHHHHHHHHHHHTT---------------------------------------------
T ss_pred HHHHhhccCCchHHHHHHHHHHCcHHHHHHhhH--HHHHHHHHHHHHc---C--CChHHHHHHhhhcc
Confidence 4433222222345555555543322 2222222 3477777777653 1 11224555555655
No 399
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.68 E-value=16 Score=26.18 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=22.9
Q ss_pred CCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
.--+|||..|-+.-+ +..||.|+-.+...
T Consensus 26 tfEcTFCadCae~~l----~g~CPnCGGelv~R 54 (84)
T COG3813 26 TFECTFCADCAENRL----HGLCPNCGGELVAR 54 (84)
T ss_pred EEeeehhHhHHHHhh----cCcCCCCCchhhcC
Confidence 345799999999876 45799999887654
No 400
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=50.38 E-value=1.2e+02 Score=26.36 Aligned_cols=110 Identities=22% Similarity=0.149 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCC--------ch--hhh----hch-----hhhHHHHHHHcccCCCCCHHHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--------PF--QLI----SVK-----QEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--------~~--~~i----~~~-----~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
.+.+.-++.+++..+|..|+.+|..|..... .+ ... ... ...-..|+..|+.+ .+....
T Consensus 42 ~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E--~~~~~l 119 (182)
T PF13251_consen 42 PSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAE--KSPPVL 119 (182)
T ss_pred cchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--cccHHH
Confidence 4455566677899999999999988754431 11 000 000 12334556666655 377888
Q ss_pred HHHHHHHHHhCCCCc-hHHHHHhcCchHHHHH----HhhcccchhHHHHHHHHHHHHhcC
Q 040073 248 KAALKLLVELCPWGR-NRIKAVEGGGVSVLVD----LLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 248 ~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~----lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
...+++|..|...-+ +|. +.|.++.++. ++.+. |.+++..++.++..+...
T Consensus 120 ~q~lK~la~Lv~~tPY~rL---~~~ll~~~v~~v~~~l~~~-d~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 120 TQLLKCLAVLVQATPYHRL---PPGLLTEVVTQVRPLLRHR-DPNVRVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHccCChhhc---CHhHHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcC
Confidence 899999999988655 333 2455555554 44454 788999999998887653
No 401
>PF14631 FancD2: Fanconi anaemia protein FancD2 nuclease; PDB: 3S4W_B.
Probab=50.33 E-value=2.2e+02 Score=33.28 Aligned_cols=101 Identities=21% Similarity=0.238 Sum_probs=61.8
Q ss_pred HHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-cC
Q 040073 193 VLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-GG 271 (407)
Q Consensus 193 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-~G 271 (407)
+|.+.+..+++-+......+-..-+. ... ..++..||..+.++ +..-...|+.+|..|+.. +...+.. +.
T Consensus 443 Ll~S~e~~v~~FG~~~Y~~lF~~fds---~~q-qeVv~~Lvthi~sg---~~~ev~~aL~vL~~L~~~--~~~~l~~fa~ 513 (1426)
T PF14631_consen 443 LLRSKEPSVREFGSHLYKYLFKEFDS---YCQ-QEVVGALVTHIGSG---NSQEVDAALDVLCELAEK--NPSELQPFAT 513 (1426)
T ss_dssp HHTSSSHHHHHHHHHHHHHHHHSS-H---HHH-HHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHH---HHHHHHTHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHhhccc---hhH-HHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHhc--cHHHHHHHHH
Confidence 34567777888877777776544321 222 46888999999888 776678999999999863 3334443 23
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
.+..+++.|..- +..-......+|..|+...
T Consensus 514 ~l~giLD~l~~L-s~~qiR~lf~il~~La~~~ 544 (1426)
T PF14631_consen 514 FLKGILDYLDNL-SLQQIRKLFDILCTLAFSD 544 (1426)
T ss_dssp HHHGGGGGGGG---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CHHHHHHHHHHHHHHhcCC
Confidence 344444455443 3344566788888887643
No 402
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=49.81 E-value=2e+02 Score=26.01 Aligned_cols=124 Identities=15% Similarity=0.156 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
..+...++.|..++..+..+... ++..|..+.+.+.. ...--+...+..+...++..-. .+..++
T Consensus 16 ~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~--~~~~~~~rLl~~lw~~~~r~f~--------~L~~~L 80 (234)
T PF12530_consen 16 ELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSL--ELRYVALRLLTLLWKANDRHFP--------FLQPLL 80 (234)
T ss_pred HHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCch--hHHHHHHHHHHHHHHhCchHHH--------HHHHHH
Confidence 77888899999998875122221 13444444443332 1123455666666654432211 343333
Q ss_pred HH-----H---hc--CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhC
Q 040073 192 RV-----L---KC--GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 192 ~l-----L---~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
.. . .+ ...+.....+..++.++...++ -+ ...++.+..+| ++. ++.++..++.+|..||
T Consensus 81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~---~g--~~ll~~ls~~L~~~~---~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD---HG--VDLLPLLSGCLNQSC---DEVAQALALEALAPLC 150 (234)
T ss_pred HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh---hH--HHHHHHHHHHHhccc---cHHHHHHHHHHHHHHH
Confidence 33 1 11 2344444556678888776665 21 24678888888 666 7889999999999999
No 403
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=49.73 E-value=1.7e+02 Score=30.98 Aligned_cols=109 Identities=20% Similarity=0.144 Sum_probs=67.0
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR 306 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r 306 (407)
.++|.|..-+++. +..+++.++..+-..+..-+ ...++.-++|.|..+-...++..++..++.++..+.. .-.+
T Consensus 389 ~IlplL~~S~~~~---~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q-~lD~ 462 (700)
T KOG2137|consen 389 KILPLLYRSLEDS---DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ-RLDK 462 (700)
T ss_pred HHHHHHHHHhcCc---chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH-HHHH
Confidence 4677777778777 88888888888887776444 4556666778887775544466778888888888873 2234
Q ss_pred HHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 307 AELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
..+++. +.++.+-+....+...-..+.+...+...
T Consensus 463 ~~v~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~ 497 (700)
T KOG2137|consen 463 AAVLDE---LLPILKCIKTRDPAIVMGFLRIYEALALI 497 (700)
T ss_pred HHhHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhh
Confidence 444442 33444434333344444444444444443
No 404
>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....
Probab=49.33 E-value=4.2 Score=21.80 Aligned_cols=13 Identities=23% Similarity=0.577 Sum_probs=6.3
Q ss_pred ccCccccccCcCc
Q 040073 10 FLCPISLQLMRDP 22 (407)
Q Consensus 10 ~~Cpi~~~~~~dP 22 (407)
|.||+|...|.++
T Consensus 1 y~C~~C~~~f~~~ 13 (23)
T PF00096_consen 1 YKCPICGKSFSSK 13 (23)
T ss_dssp EEETTTTEEESSH
T ss_pred CCCCCCCCccCCH
Confidence 3455555554443
No 405
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=48.50 E-value=14 Score=41.01 Aligned_cols=41 Identities=29% Similarity=0.754 Sum_probs=29.4
Q ss_pred CCCCcccCcccc--ccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 5 EVPAHFLCPISL--QLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 5 ~~p~~~~Cpi~~--~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
.+|.++.||-|. +.+.|+ ..-+| || - -.+.||.|+.++..+
T Consensus 910 PL~PHY~Cp~Cky~Ef~~d~-svgsG--fD---------L-pdK~CPkCg~pl~kD 952 (1444)
T COG2176 910 PLPPHYLCPECKYSEFIDDG-SVGSG--FD---------L-PDKDCPKCGTPLKKD 952 (1444)
T ss_pred CCCccccCCCCceeeeecCC-CcCCC--CC---------C-CCCCCCcCCCccccC
Confidence 589999999998 667776 33333 32 1 267899999998654
No 406
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.42 E-value=8.9 Score=28.73 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=11.7
Q ss_pred cccHHHHHHHHhc
Q 040073 30 TYDRVNIERWLFT 42 (407)
Q Consensus 30 t~~r~~i~~~~~~ 42 (407)
-|||.|+.+|..+
T Consensus 42 gFCRNCLs~Wy~e 54 (104)
T COG3492 42 GFCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 407
>cd00729 rubredoxin_SM Rubredoxin, Small Modular nonheme iron binding domain containing a [Fe(SCys)4] center, present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=48.38 E-value=12 Score=22.69 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=7.7
Q ss_pred CCCCcccccc
Q 040073 45 NNTCPVTKQV 54 (407)
Q Consensus 45 ~~~cP~~~~~ 54 (407)
...||+|+.+
T Consensus 18 p~~CP~Cg~~ 27 (34)
T cd00729 18 PEKCPICGAP 27 (34)
T ss_pred CCcCcCCCCc
Confidence 4589999875
No 408
>PF06676 DUF1178: Protein of unknown function (DUF1178); InterPro: IPR009562 This family consists of several hypothetical bacterial proteins of around 150 residues in length. The function of this family is unknown.
Probab=48.10 E-value=6.7 Score=32.77 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=22.4
Q ss_pred CCcccccHHHHHHHHhcC---------CCCCCccccccccccCCCCCCccH
Q 040073 26 STGITYDRVNIERWLFTC---------KNNTCPVTKQVLQETDLTSTTPNH 67 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~---------~~~~cP~~~~~~~~~~~~~l~~n~ 67 (407)
.+||+|| .||... |-.+||+|+..--.+. .+.|+.
T Consensus 9 ~~gH~FE-----gWF~ss~~fd~Q~~~glv~CP~Cgs~~V~K~--lmAP~v 52 (148)
T PF06676_consen 9 ENGHEFE-----GWFRSSAAFDRQQARGLVSCPVCGSTEVSKA--LMAPAV 52 (148)
T ss_pred CCCCccc-----eecCCHHHHHHHHHcCCccCCCCCCCeEeee--cCCCee
Confidence 3689995 477542 4678999997633332 555653
No 409
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=48.05 E-value=1.7e+02 Score=29.81 Aligned_cols=114 Identities=12% Similarity=0.151 Sum_probs=69.6
Q ss_pred CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHH---HhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhccCC
Q 040073 271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAEL---LKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCKFSA 346 (407)
Q Consensus 271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i---~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~ 346 (407)
+.|+.+++.+... .+.+--+.++. +..++++..+ ....+.|+.|+.+|.. .+...+.+|..+|..+-.-+.
T Consensus 21 ~~v~~llkHI~~~---~ImDlLLklIs--~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is~ 95 (475)
T PF04499_consen 21 NFVDNLLKHIDTP---AIMDLLLKLIS--TDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRISR 95 (475)
T ss_pred cHHHHHHHhcCCc---HHHHHHHHHHc--cCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 5566666655432 33333333333 2222333333 3446789999997753 346778888877777654332
Q ss_pred c-----------hHHHHHHHHhChHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhh
Q 040073 347 T-----------ARVLQEMLQVGVVSKLCLVLQV-DASVKTKERAREILKLNARA 389 (407)
Q Consensus 347 ~-----------~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~k~~A~~lL~~l~~~ 389 (407)
+ .....++++.-.+.+|+..+-. .+....---..-++.++++.
T Consensus 96 n~~~~~~~~igpn~L~r~L~S~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLIRkn 150 (475)
T PF04499_consen 96 NAPQNEQSSIGPNPLTRQLVSEETVEKLLDIMLNSQGGSSLVNGVSILIELIRKN 150 (475)
T ss_pred ccccccccCCCccHHHHHHhChHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhc
Confidence 1 3577788888999999999874 33444445555677888775
No 410
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=47.79 E-value=2.9e+02 Score=27.38 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=87.0
Q ss_pred HHHHHHHHhcCC-hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cCC----CCCHHHHHHHHHHHHHhC
Q 040073 187 LESLMRVLKCGN-YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DHH----QFSQQASKAALKLLVELC 258 (407)
Q Consensus 187 i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~----~~~~~~~~~A~~aL~~L~ 258 (407)
-..++.+|.++. ...+......++-|+.+...-......+ .+..|..+-+ ++. ..+..+...|+.+|+|+.
T Consensus 47 ~e~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q-~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlv 125 (532)
T KOG4464|consen 47 GERIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQ-LCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLV 125 (532)
T ss_pred HHHHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchH-HHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHH
Confidence 346778888875 5566778888888887766544444332 2444444322 110 124578899999999998
Q ss_pred CCCc-hHHHHHhcCchHHHHHHhhccc----chhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHc
Q 040073 259 PWGR-NRIKAVEGGGVSVLVDLLLDVT----ERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILR 325 (407)
Q Consensus 259 ~~~~-n~~~~v~~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~ 325 (407)
-+.. .+....+......+.+.+...- ...+.-.-+..|.-|.. ..+.|.++....+|++.+-+.+.+
T Consensus 126 f~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led 198 (532)
T KOG4464|consen 126 FHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLED 198 (532)
T ss_pred hccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhc
Confidence 8544 6666777776777777665421 12233344555554433 457888888878899988886644
No 411
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=47.66 E-value=1e+02 Score=32.53 Aligned_cols=72 Identities=21% Similarity=0.254 Sum_probs=54.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
.+..|++.|...++-+|.+|...+..+..-+ .+..+..+.++...++.|++. +.-++++|...+..|...++
T Consensus 347 Lv~ll~ERl~D~~py~RtKalqv~~kifdl~--sk~~~~r~ev~~lv~r~lqDr---ss~VRrnaikl~SkLL~~HP 418 (1128)
T COG5098 347 LVGLLVERLSDTYPYTRTKALQVLEKIFDLN--SKTVGRRHEVIRLVGRRLQDR---SSVVRRNAIKLCSKLLMRHP 418 (1128)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHHHhCc--ccccchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHhcCC
Confidence 5667777777789999999999988876433 233444566777778889888 88999999999888876444
No 412
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=47.46 E-value=2.8e+02 Score=27.10 Aligned_cols=146 Identities=20% Similarity=0.118 Sum_probs=68.8
Q ss_pred HHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh-ccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073 101 VKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT-KSDAGSDECDEALSILYHLNVSESYLKS 177 (407)
Q Consensus 101 ~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 177 (407)
+.+-+.+.+++ ..|..|..-|+.+++.-...-..+. .+.+..++.-.. ++...-..++.|+..+..++......+.
T Consensus 213 EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~-~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~ 291 (370)
T PF08506_consen 213 EYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSIL-MQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKS 291 (370)
T ss_dssp HHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTT
T ss_pred HHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccC
Confidence 34445565555 5567788888899865222111111 122222222222 2222112377788877777654321111
Q ss_pred Hhhc-cch-hhHHHHHH----HHh---cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073 178 IVIN-NGE-EFLESLMR----VLK---CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 178 ~i~~-~gg-~~i~~Lv~----lL~---~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 248 (407)
=+.. +.. .+.+.+.. -|. +..+-.+..|++.+...-..-+ +. .. .++++.|+..|+++ +.-+..
T Consensus 292 Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLka~aik~~~~Fr~~l~-~~-~l--~~~~~~l~~~L~~~---~~vv~t 364 (370)
T PF08506_consen 292 GVTQTNELVDVVDFFSQHVLPELQPDVNSHPILKADAIKFLYTFRNQLP-KE-QL--LQIFPLLVNHLQSS---SYVVHT 364 (370)
T ss_dssp B-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHHHHHHHHHHHHGGGS--HH-HH--HHHHHHHHHHTTSS----HHHHH
T ss_pred CcccccccccHHHHHHHHhHHHhcccCCCCcchHHHHHHHHHHHHhhCC-HH-HH--HHHHHHHHHHhCCC---Ccchhh
Confidence 0000 000 01222211 222 2345566777777776643321 22 21 35799999999988 777777
Q ss_pred HHHHHH
Q 040073 249 AALKLL 254 (407)
Q Consensus 249 ~A~~aL 254 (407)
-|+.++
T Consensus 365 yAA~~i 370 (370)
T PF08506_consen 365 YAAIAI 370 (370)
T ss_dssp HHHHHH
T ss_pred hhhhhC
Confidence 777664
No 413
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=47.43 E-value=14 Score=35.09 Aligned_cols=53 Identities=21% Similarity=0.367 Sum_probs=38.1
Q ss_pred CCCCc-ccCccccccCcC----ceecCCc-----ccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 5 EVPAH-FLCPISLQLMRD----PVTVSTG-----ITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~-~~Cpi~~~~~~d----Pv~~~~g-----~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+.|.+ ..|-||...... |...+|. +..-|.|++.|+...++..|.+|.+....
T Consensus 73 ~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~ 135 (323)
T KOG1609|consen 73 ESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFIN 135 (323)
T ss_pred cCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeeccccccee
Confidence 34555 789999875532 6666653 33569999999987678899999876543
No 414
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.31 E-value=55 Score=33.04 Aligned_cols=69 Identities=10% Similarity=0.124 Sum_probs=54.8
Q ss_pred hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC-CCHHHHHHHHHHHHH
Q 040073 316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD-ASVKTKERAREILKL 385 (407)
Q Consensus 316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~ 385 (407)
+..|-+.|...++..+-.|+.+|-.+.++++. .+-.++.+.+.+..+|...... ....+|+++-.+|+.
T Consensus 40 vralkKRi~~k~s~vq~lALtlLE~cvkNCG~-~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 40 VRALKKRLNSKNSKVQLLALTLLETCVKNCGY-SFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 45566666555678899999988888887765 3777889999999999988876 688999998888764
No 415
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=46.78 E-value=1e+02 Score=31.77 Aligned_cols=83 Identities=12% Similarity=0.055 Sum_probs=47.1
Q ss_pred chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073 156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN 234 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 234 (407)
+++..|+-+|...|..+.+ .+...+++|. +.+..+|.-.+-+|.--+...-.+ -++..|=.
T Consensus 567 DVrRAAViAlGfvc~~D~~-----------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~-------~a~diL~~ 628 (926)
T COG5116 567 DVRRAAVIALGFVCCDDRD-----------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK-------VATDILEA 628 (926)
T ss_pred HHHHHHHHheeeeEecCcc-----------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-------HHHHHHHH
Confidence 4566666666666554421 3445556664 357777777777777554332221 13444444
Q ss_pred HcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 235 VLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 235 lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++.+. ++-+++.|+-++.-+..
T Consensus 629 L~~D~---~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 629 LMYDT---NDFVRQSAMIAVGMILM 650 (926)
T ss_pred HhhCc---HHHHHHHHHHHHHHHHh
Confidence 55555 66777777777665543
No 416
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.54 E-value=1.3e+02 Score=28.09 Aligned_cols=71 Identities=18% Similarity=0.223 Sum_probs=47.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHH----HHHHHcc--------cCCCCCHHHHHHHHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFT----EIVNVLR--------DHHQFSQQASKAALK 252 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~----~Lv~lL~--------~~~~~~~~~~~~A~~ 252 (407)
++|.+..++++.+.+.|..++.+|..+........ .+....|... .|...|- ++ +......|.-
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~---s~~Ll~~ay~ 196 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDE---SLELLQAAYP 196 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchh---hHHHHHHHHH
Confidence 78999999999999999999999999986544333 1223334333 3333333 22 5567777777
Q ss_pred HHHHhCC
Q 040073 253 LLVELCP 259 (407)
Q Consensus 253 aL~~L~~ 259 (407)
+|..|+.
T Consensus 197 ~L~~L~~ 203 (282)
T PF10521_consen 197 ALLSLLK 203 (282)
T ss_pred HHHHHHH
Confidence 7777743
No 417
>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]
Probab=45.42 E-value=3.4e+02 Score=28.74 Aligned_cols=138 Identities=17% Similarity=0.128 Sum_probs=89.6
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-------NRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
+-++.||+.++++ +++.+++|+..|+..-.... +-.++.+ .|.+..+.+-+. +.+.+...+.+|.
T Consensus 48 ~dLellVervqdp---d~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~---~~n~Kk~laDIlS 121 (878)
T KOG2005|consen 48 GDLELLVERVQDP---DPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMA---DSNLKKWLADILS 121 (878)
T ss_pred hhHHHHHHHhcCC---ChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhcc---CchhHhHHHHHHH
Confidence 4589999999998 99999999999987654222 2233333 233333333333 4578899999999
Q ss_pred HHhcCHhhHHHHHhc--c-----------CchHHHHHHHHcC---------C-chhhHHHHHHHHHHhccCCchHHHHHH
Q 040073 298 LLCRCAEGRAELLKH--G-----------AGLAVVSKKILRV---------S-HAASDRAVRILCSVCKFSATARVLQEM 354 (407)
Q Consensus 298 ~L~~~~~~r~~i~~~--~-----------g~i~~Lv~~l~~~---------s-~~~~e~a~~~L~~l~~~~~~~~~~~~~ 354 (407)
.||...++|..-... . ..|..|..-+... + ....+.+..+.-...+++.+.+.+.-.
T Consensus 122 vLamt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL 201 (878)
T KOG2005|consen 122 VLAMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLL 201 (878)
T ss_pred HHheeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence 999876655443110 0 1233444333221 1 234556666777777777777788888
Q ss_pred HHhChHHHHHHHHhcC
Q 040073 355 LQVGVVSKLCLVLQVD 370 (407)
Q Consensus 355 ~~~g~i~~Ll~ll~~~ 370 (407)
++.|.|..|+.....+
T Consensus 202 ~Eve~id~l~~~Vd~~ 217 (878)
T KOG2005|consen 202 MEVEGIDLLLDYVDEH 217 (878)
T ss_pred HHhhhHhHHHHHhhhh
Confidence 8999999999887643
No 418
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=45.27 E-value=19 Score=28.19 Aligned_cols=45 Identities=16% Similarity=0.081 Sum_probs=32.7
Q ss_pred ccCccccccCcCceecC--------C---cccccHHHHHHHHhcC-------CCCCCcccccc
Q 040073 10 FLCPISLQLMRDPVTVS--------T---GITYDRVNIERWLFTC-------KNNTCPVTKQV 54 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~--------~---g~t~~r~~i~~~~~~~-------~~~~cP~~~~~ 54 (407)
-+|-.|.+--.|..+.. | .-.||+.||..++.+. .+..||.|+..
T Consensus 8 ~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crgi 70 (105)
T PF10497_consen 8 KTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGI 70 (105)
T ss_pred CCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCe
Confidence 46777887777777654 3 4579999999988652 35779999753
No 419
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=45.26 E-value=3.8e+02 Score=27.91 Aligned_cols=64 Identities=19% Similarity=0.226 Sum_probs=42.2
Q ss_pred hhHHHHHHH-cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 227 EFFTEIVNV-LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 227 g~i~~Lv~l-L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
|++..|+.. .+++ +++++++|.-||.-.|..+.+ .++..+++|.+.-+.-++-..+-+|..-|.
T Consensus 551 ~vv~~lLh~avsD~---nDDVrRAAViAlGfvc~~D~~--------~lv~tvelLs~shN~hVR~g~AvaLGiaca 615 (926)
T COG5116 551 GVVSTLLHYAVSDG---NDDVRRAAVIALGFVCCDDRD--------LLVGTVELLSESHNFHVRAGVAVALGIACA 615 (926)
T ss_pred hhHhhhheeecccC---chHHHHHHHHheeeeEecCcc--------hhhHHHHHhhhccchhhhhhhHHHhhhhhc
Confidence 567777776 5565 899999999999988876554 466677777664234444444445544433
No 420
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=44.92 E-value=29 Score=31.97 Aligned_cols=53 Identities=17% Similarity=0.285 Sum_probs=34.2
Q ss_pred CCCcccCccccccCcC-------------cee-cCCcccccHHHHHH-HHhcC---CCCCCcccccccccc
Q 040073 6 VPAHFLCPISLQLMRD-------------PVT-VSTGITYDRVNIER-WLFTC---KNNTCPVTKQVLQET 58 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~d-------------Pv~-~~~g~t~~r~~i~~-~~~~~---~~~~cP~~~~~~~~~ 58 (407)
-+..|.|+.|...+.- |-. .-||--|.|.++.+ ++... ..+.||.|++.+.+.
T Consensus 158 s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADR 228 (279)
T KOG2462|consen 158 SKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADR 228 (279)
T ss_pred ccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcccccccCCCCccCCcccchhcch
Confidence 3667889999877642 221 23777788876554 22221 257899999988763
No 421
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=44.75 E-value=26 Score=27.62 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhH
Q 040073 247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRV 288 (407)
Q Consensus 247 ~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~ 288 (407)
....+..|..|+..++-=..+++.|+++.|+++|... +.++
T Consensus 63 Ld~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~He-N~DI 103 (108)
T PF08216_consen 63 LDEEIKKLSVLATAPELYPELVELGAVPSLLGLLSHE-NTDI 103 (108)
T ss_pred HHHHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCC-Ccce
Confidence 3455677888888888888899999999999999875 4443
No 422
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=44.67 E-value=1.8e+02 Score=30.84 Aligned_cols=131 Identities=14% Similarity=0.140 Sum_probs=73.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
++|.|..-+++.+..+++.+...+-..+..-+. ..+. .-++|.|-++.... .+..++.+++.++..+.. .-.+.
T Consensus 390 IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~--~~vk-~~ilP~l~~l~~~t--t~~~vkvn~L~c~~~l~q-~lD~~ 463 (700)
T KOG2137|consen 390 ILPLLYRSLEDSDVQIQELALQILPTVAESIDV--PFVK-QAILPRLKNLAFKT--TNLYVKVNVLPCLAGLIQ-RLDKA 463 (700)
T ss_pred HHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH--HHHH-HHHHHHhhcchhcc--cchHHHHHHHHHHHHHHH-HHHHH
Confidence 566666666677777888888877777654442 1222 34566666553322 266777788888877761 11222
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
.+++. +.++.+-.... ++.++...+.+..++....-++..++. ...+|.++-+..+.
T Consensus 464 ~v~d~--~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g~ev~~-~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 464 AVLDE--LLPILKCIKTR-DPAIVMGFLRIYEALALIIYSGVEVMA-ENVLPLLIPLSVAP 520 (700)
T ss_pred HhHHH--HHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccceeeeh-hhhhhhhhhhhhcc
Confidence 22222 44444444443 677777777777776653333233333 24566666644433
No 423
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=44.57 E-value=1.1e+02 Score=29.32 Aligned_cols=66 Identities=20% Similarity=0.180 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHhcC--chHHHHHHhhccc--chhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073 246 ASKAALKLLVELCPWGRNRIKAVEGG--GVSVLVDLLLDVT--ERRVCELMLNVLDLLCRCAEGRAELLK 311 (407)
Q Consensus 246 ~~~~A~~aL~~L~~~~~n~~~~v~~G--~v~~Lv~lL~~~~--~~~~~~~al~~L~~L~~~~~~r~~i~~ 311 (407)
++-.|+..|..+.........+.+.+ .+.-|++++..+. ...++..|+.+|..++........|+.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~ 307 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLR 307 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 44444455555555556777777776 9999999998753 468889999999999986554444443
No 424
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=44.23 E-value=17 Score=38.28 Aligned_cols=11 Identities=18% Similarity=0.371 Sum_probs=5.4
Q ss_pred CCCCccccccc
Q 040073 45 NNTCPVTKQVL 55 (407)
Q Consensus 45 ~~~cP~~~~~~ 55 (407)
.++||.||..+
T Consensus 41 ~~fC~~CG~~~ 51 (645)
T PRK14559 41 EAHCPNCGAET 51 (645)
T ss_pred cccccccCCcc
Confidence 34555555443
No 425
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=43.92 E-value=4.2e+02 Score=28.09 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=122.8
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
+++.+-...|..... ..-+.++..-.++.|+..+.-++.... .+..+.-+...-+ ... .. .+ ++|.|+
T Consensus 269 ~eK~~Ff~~L~~~l~---~~pe~i~~~kvlp~Ll~~~~~g~a~~~----~ltpl~k~~k~ld-~~e-yq-~~--i~p~l~ 336 (690)
T KOG1243|consen 269 EEKQKFFSGLIDRLD---NFPEEIIASKVLPILLAALEFGDAASD----FLTPLFKLGKDLD-EEE-YQ-VR--IIPVLL 336 (690)
T ss_pred HHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHhhccccchh----hhhHHHHhhhhcc-ccc-cc-cc--hhhhHH
Confidence 555554444444221 222233444457777777776653221 2222222221111 111 22 22 899999
Q ss_pred HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 192 RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 192 ~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
++++..+..+|..-..-+-..... -...+..+ .++|.+..-+.+. ++.+++..+.++.-|+.--.-+ -+...
T Consensus 337 kLF~~~Dr~iR~~LL~~i~~~i~~--Lt~~~~~d-~I~phv~~G~~DT---n~~Lre~Tlksm~~La~kL~~~--~Ln~E 408 (690)
T KOG1243|consen 337 KLFKSPDRQIRLLLLQYIEKYIDH--LTKQILND-QIFPHVALGFLDT---NATLREQTLKSMAVLAPKLSKR--NLNGE 408 (690)
T ss_pred HHhcCcchHHHHHHHHhHHHHhhh--cCHHhhcc-hhHHHHHhhcccC---CHHHHHHHHHHHHHHHhhhchh--hhcHH
Confidence 999998888886554444433221 12223343 5788888888887 9999999999998887622211 11111
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHH
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVL 351 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~ 351 (407)
.+..+..+-.+ .+..++-+..-+|..++.+-+ ..+.+...+-++.+.+.+.=...+..++.+++..+..-...++.
T Consensus 409 llr~~ar~q~d-~~~~irtntticlgki~~~l~---~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va 484 (690)
T KOG1243|consen 409 LLRYLARLQPD-EHGGIRTNTTICLGKIAPHLA---ASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVA 484 (690)
T ss_pred HHHHHHhhCcc-ccCcccccceeeecccccccc---hhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhh
Confidence 22222222222 244555555555555554321 11122211222333233333566777777777766654432222
Q ss_pred HHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 352 QEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 352 ~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
...++.+.-+.- +.+.-+|..|-..++.+
T Consensus 485 -----~kIlp~l~pl~v-d~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 485 -----NKILPSLVPLTV-DPEKTVRDTAEKAIRQF 513 (690)
T ss_pred -----hhcccccccccc-CcccchhhHHHHHHHHH
Confidence 235555544443 44556666666655443
No 426
>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A ....
Probab=43.90 E-value=7.7 Score=20.54 Aligned_cols=12 Identities=42% Similarity=0.844 Sum_probs=5.0
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.||+|...|.+
T Consensus 1 ~~C~~C~~~~~~ 12 (24)
T PF13894_consen 1 FQCPICGKSFRS 12 (24)
T ss_dssp EE-SSTS-EESS
T ss_pred CCCcCCCCcCCc
Confidence 345555554443
No 427
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=43.72 E-value=1.5e+02 Score=22.90 Aligned_cols=92 Identities=12% Similarity=-0.006 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHH-hcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLE-AAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL 190 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~-~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L 190 (407)
+.|..|+..|..--.++--.-..+. ..+.+..|+.-+.....+ ..++++..|..+..++. ...++.+-| +.+.|
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~--~~~~VL~Ll~~L~~~~~-a~~~l~~iG--~~~fL 76 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVP--MKEEVLALLLRLLKSPY-AAQILRDIG--AVRFL 76 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCc--cHHHHHHHHHHHHhCcH-HHHHHHHcc--HHHHH
Confidence 3466666655443332222222222 233445555544444443 38999999999998875 456666666 67775
Q ss_pred HHHHhcCChhHHHHHHHH
Q 040073 191 MRVLKCGNYQSRSYAIML 208 (407)
Q Consensus 191 v~lL~~~~~~~~~~a~~~ 208 (407)
-++=..-++..+...-.+
T Consensus 77 ~klr~~~~~~~~~~id~i 94 (98)
T PF14726_consen 77 SKLRPNVEPNLQAEIDEI 94 (98)
T ss_pred HHHHhcCCHHHHHHHHHH
Confidence 555544455444443333
No 428
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=43.48 E-value=25 Score=31.53 Aligned_cols=53 Identities=17% Similarity=0.191 Sum_probs=31.3
Q ss_pred CcccCccccccCcCceecCCcccccHHHHH--HHHhcC-----CCCCCccccccccccCC
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIE--RWLFTC-----KNNTCPVTKQVLQETDL 60 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~--~~~~~~-----~~~~cP~~~~~~~~~~~ 60 (407)
..+.||+|..-|.-.-+.+.+-...+.--. ..+..- ...+||.|+-...+..|
T Consensus 4 k~~~CPvC~~~F~~~~vrs~~~r~~~~d~D~~~~Y~~vnP~~Y~V~vCP~CgyA~~~~~F 63 (214)
T PF09986_consen 4 KKITCPVCGKEFKTKKVRSGKIRVIRRDSDFCPRYKGVNPLFYEVWVCPHCGYAAFEEDF 63 (214)
T ss_pred CceECCCCCCeeeeeEEEcCCceEeeecCCCccccCCCCCeeeeEEECCCCCCccccccc
Confidence 468999999999988766655444211000 001100 12579999987765434
No 429
>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []. The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.
Probab=43.32 E-value=4.5e+02 Score=28.29 Aligned_cols=123 Identities=15% Similarity=0.186 Sum_probs=85.5
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CA 303 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~ 303 (407)
.+...+...+..+ +.......+.++.+++.-.. .++ ...-.++-..-.... -..+.+....+|..++. .+
T Consensus 441 ~lW~~l~~~~~~~---~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~-~~~~~~~~~~il~rls~~~~ 513 (727)
T PF12726_consen 441 NLWKALLKSLDSD---NPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKS-LGQITDLISQILERLSDFDP 513 (727)
T ss_pred HHHHHHHHhhcCC---ChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHH-HHHHHHHHHHHHHHHhcCCH
Confidence 4566677777776 88899999999999987433 222 111223333333222 34566778888999988 45
Q ss_pred hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH
Q 040073 304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ 356 (407)
Q Consensus 304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~ 356 (407)
+.-..+..+......++..+.+..+...+.|..+|..+.....-.+..+++.+
T Consensus 514 ~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~R~e~i~~ll~ 566 (727)
T PF12726_consen 514 SHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDGRLEAIQALLQ 566 (727)
T ss_pred HHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 66778887778888999989988889999999999999975443345555554
No 430
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=43.30 E-value=4.1e+02 Score=27.76 Aligned_cols=94 Identities=15% Similarity=0.189 Sum_probs=55.4
Q ss_pred hHHHHHHHHh----cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC
Q 040073 186 FLESLMRVLK----CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 186 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
.++.|...|. .++.+.+..+..+|+|+.. ...++.|..++......+...+..|+.||+.+....
T Consensus 487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~-----------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~ 555 (618)
T PF01347_consen 487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH-----------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC 555 (618)
T ss_dssp GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-
T ss_pred HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC-----------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC
Confidence 5666666665 3566777888888888742 235777888776542246788888889988775433
Q ss_pred chHHHHHhcCchHHHHHHhhccc-chhHHHHHHHHHH
Q 040073 262 RNRIKAVEGGGVSVLVDLLLDVT-ERRVCELMLNVLD 297 (407)
Q Consensus 262 ~n~~~~v~~G~v~~Lv~lL~~~~-~~~~~~~al~~L~ 297 (407)
..+ +.+.|+.++.+.. +.+++-.|+.+|.
T Consensus 556 ~~~-------v~~~l~~I~~n~~e~~EvRiaA~~~lm 585 (618)
T PF01347_consen 556 PEK-------VREILLPIFMNTTEDPEVRIAAYLILM 585 (618)
T ss_dssp HHH-------HHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred cHH-------HHHHHHHHhcCCCCChhHHHHHHHHHH
Confidence 222 2466777776642 4455555544433
No 431
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=43.16 E-value=24 Score=24.07 Aligned_cols=30 Identities=27% Similarity=0.243 Sum_probs=22.4
Q ss_pred ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 24 TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 24 ~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+-+--.|||..|-+..+ +..||.|+-.+..
T Consensus 24 ICSfECTFC~~C~e~~l----~~~CPNCgGelv~ 53 (57)
T PF06906_consen 24 ICSFECTFCADCAETML----NGVCPNCGGELVR 53 (57)
T ss_pred EEeEeCcccHHHHHHHh----cCcCcCCCCcccc
Confidence 33334699999999877 3479999977654
No 432
>PF09162 Tap-RNA_bind: Tap, RNA-binding; InterPro: IPR015245 This domain adopts a structure consisting of an alpha+beta sandwich with an antiparallel beta-sheet, arranged in a 2(beta-alpha-beta) motif. It is mainly found in mRNA export factors, which mediate the sequence nonspecific nuclear export of cellular mRNAs as well as the sequence-specific export of retroviral mRNAs bearing the constitutive transport element []. ; GO: 0003723 RNA binding, 0006406 mRNA export from nucleus, 0005634 nucleus, 0005737 cytoplasm; PDB: 1FT8_A 1KOH_C 1KOO_C 3RW6_B 3RW7_C 1FO1_A.
Probab=43.12 E-value=17 Score=27.45 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=16.9
Q ss_pred eecCCcccccHHHHHHHHhc
Q 040073 23 VTVSTGITYDRVNIERWLFT 42 (407)
Q Consensus 23 v~~~~g~t~~r~~i~~~~~~ 42 (407)
|+++.|+.|++..|.+-+..
T Consensus 10 VtIp~G~KYdK~wLl~~iq~ 29 (88)
T PF09162_consen 10 VTIPYGKKYDKDWLLNSIQS 29 (88)
T ss_dssp EEETTGGGS-HHHHHHHHHH
T ss_pred EEecCCcccCHHHHHHHHHH
Confidence 79999999999999998754
No 433
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.97 E-value=9.2 Score=35.15 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=32.0
Q ss_pred ccCccccccCcCceecCC----cccccHHHHHHHHhcC---CCCCCccc
Q 040073 10 FLCPISLQLMRDPVTVST----GITYDRVNIERWLFTC---KNNTCPVT 51 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~----g~t~~r~~i~~~~~~~---~~~~cP~~ 51 (407)
++|-+|.|-+.|---+.| +|.||.-|=.+.+++. +.-+||.-
T Consensus 269 LcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSG 317 (352)
T KOG3579|consen 269 LCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSG 317 (352)
T ss_pred eeehhhhhhhccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCC
Confidence 899999999999876644 7999988877777653 34567654
No 434
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=42.13 E-value=15 Score=28.42 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..+|..|.||-|++ ..-||.+ +| . .++..||.|+.-...
T Consensus 16 ~klpt~f~CP~Cge-~~v~v~~------~k-------~-~~h~~C~~CG~y~~~ 54 (99)
T PRK14892 16 PKLPKIFECPRCGK-VSISVKI------KK-------N-IAIITCGNCGLYTEF 54 (99)
T ss_pred cCCCcEeECCCCCC-eEeeeec------CC-------C-cceEECCCCCCccCE
Confidence 35788999999995 2333322 22 1 247889999976543
No 435
>PF02146 SIR2: Sir2 family; InterPro: IPR003000 These sequences represent the Sirtuin (Sir2-related) family of NAD+-dependent deacetylases. This family of enzymes is broadly conserved from bacteria to humans. In yeast, Sir2 proteins form complexes with other proteins to silence chromatin by accessing histones and deacetylating them. Sir2 proteins have been proposed to play a role in silencing, chromosome stability and ageing []. The bacterial enzyme CobB, an homologue of Sir2, is a phosphoribosyltransferase []. An in vitro ADP ribosyltransferase activity has also been associated with human members of this family []. Sir2-like enzymes employ NAD+ as a cosubstrate in deacetylation reactions [] and catalyse a reaction in which the cleavage of NAD(+)and histone and/or protein deacetylation are coupled to the formation of O-acetyl-ADP-ribose, a novel metabolite. The dependence of the reaction on both NAD(+) and the generation of this potential second messenger offers new clues to understanding the function and regulation of nuclear, cytoplasmic and mitochondrial Sir2-like enzymes []. Silent Information Regulator protein of Saccharomyces cerevisiae (Sir2) is one of several factors critical for silencing at least three loci. Among them, it is unique because it silences the rDNA as well as the mating type loci and telomeres []. Sir2 interacts in a complex with itself and with Sir3 and Sir4, two proteins that are able to interact with nucleosomes. In addition Sir2 also interacts with ubiquitination factors and/or complexes []. Homologues of Sir2 share a core domain including the GAG and NID motifs and a putative C4 Zinc finger. The regions containing these three conserved motifs are individually essential for Sir2 silencing function, as are the four cysteins []. In addition, the conserved residues HG next to the putative Zn finger have been shown to be essential for the ADP ribosyltransferase activity []. ; GO: 0008270 zinc ion binding, 0070403 NAD+ binding, 0006476 protein deacetylation; PDB: 1S5P_A 3PKI_E 3PKJ_F 3K35_A 1ICI_A 1M2K_A 1M2G_A 1M2N_B 1M2H_A 1M2J_A ....
Probab=42.13 E-value=43 Score=28.84 Aligned_cols=48 Identities=21% Similarity=0.351 Sum_probs=31.1
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccccccccC--CCCCCccHHHHHHHH
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQVLQETD--LTSTTPNHTLRRLIQ 74 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~--~~~l~~n~~l~~~I~ 74 (407)
.||+.|.+..+...........||.|+..+.++. |.+..| ..+.+.++
T Consensus 110 ~C~~~~~~~~~~~~~~~~~~~~C~~C~~~lrp~vv~fgE~~~-~~~~~~~~ 159 (178)
T PF02146_consen 110 KCGKEYDREDIVDSIDEEEPPRCPKCGGLLRPDVVLFGESLP-EEIEEAIE 159 (178)
T ss_dssp TTSBEEEGHHHHHHHHTTSSCBCTTTSCBEEEEE--BTSB-S-HHHHHHHH
T ss_pred CCCccccchhhcccccccccccccccCccCCCCeeecCCCCH-HHHHHHHH
Confidence 5888998887777665544578999998876531 123344 55666555
No 436
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=41.84 E-value=1.2e+02 Score=24.59 Aligned_cols=50 Identities=16% Similarity=0.171 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHh-cCcHHHHHHHhh
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEA-AGAIEFLATIIT 149 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~-~G~i~~Lv~lL~ 149 (407)
...|.++|.... -++.++|..|..++.. ++..+..+.+ ...|..+.++=.
T Consensus 40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g 92 (122)
T cd03572 40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKG 92 (122)
T ss_pred HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCC
Confidence 456777887655 7889999999999876 4566777776 445555554443
No 437
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=41.81 E-value=1.5e+02 Score=25.86 Aligned_cols=71 Identities=18% Similarity=0.156 Sum_probs=51.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
.+|.+++=|......-+-.|...+..|... ...+..-+. ...|.+|-.-|++. ++++...++.+|..|...
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr---~~~V~~~~L~~Lq~Lv~~ 110 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTR---DPEVFCATLKALQQLVTS 110 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCC---CHHHHHHHHHHHHHHHHh
Confidence 678888888777777777777777777665 333332222 35677777888888 999999999999999654
No 438
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.73 E-value=4.8e+02 Score=28.15 Aligned_cols=77 Identities=12% Similarity=-0.046 Sum_probs=49.9
Q ss_pred HHHHHHHhhccCC--CCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 141 IEFLATIITKSDA--GSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 141 i~~Lv~lL~~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
...+..++.+... ...+.-+|+.++.+|..-. .+.+. . ++..|--++++.....|=.|.++|..++.....
T Consensus 243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~---~r~l~--p--avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTN---SRELA--P--AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccC---Hhhcc--h--HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 3444444444322 2245677777777766432 23333 2 577777888888999999999999999987776
Q ss_pred hhhhhc
Q 040073 219 FQLISV 224 (407)
Q Consensus 219 ~~~i~~ 224 (407)
......
T Consensus 316 ~v~~cN 321 (865)
T KOG1078|consen 316 AVTVCN 321 (865)
T ss_pred cccccc
Confidence 655544
No 439
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=40.36 E-value=13 Score=25.21 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=13.0
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVT 51 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~ 51 (407)
.|||.| +..|..-.. +...||.|
T Consensus 33 ~Cgh~w-~~~v~~R~~--~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEW-KASVNDRTR--RGKGCPYC 55 (55)
T ss_pred CCCCee-EccHhhhcc--CCCCCCCC
Confidence 367777 445554332 25668876
No 440
>smart00834 CxxC_CXXC_SSSS Putative regulatory protein. CxxC_CXXC_SSSS represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=40.29 E-value=14 Score=22.97 Aligned_cols=11 Identities=27% Similarity=0.386 Sum_probs=8.6
Q ss_pred CCCCccccccc
Q 040073 45 NNTCPVTKQVL 55 (407)
Q Consensus 45 ~~~cP~~~~~~ 55 (407)
...||.|+..+
T Consensus 26 ~~~CP~Cg~~~ 36 (41)
T smart00834 26 LATCPECGGDV 36 (41)
T ss_pred CCCCCCCCCcc
Confidence 56799998854
No 441
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=40.29 E-value=5e+02 Score=27.91 Aligned_cols=91 Identities=18% Similarity=0.146 Sum_probs=64.2
Q ss_pred HHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchH--HHHHHHHcCCc-
Q 040073 253 LLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLA--VVSKKILRVSH- 328 (407)
Q Consensus 253 aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~--~Lv~~l~~~s~- 328 (407)
+|+++.. .+++++.+++.|++..+...+..-...+....+++.|.+++...+.+....... -+. .+-.++.+.+.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~-~~~~~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFE-FIDFSVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHH-HHHHHHHHHHHhhcchh
Confidence 8888887 567999999999999999999876567888999999999998665443332111 111 12222333433
Q ss_pred hhhHHHHHHHHHHhcc
Q 040073 329 AASDRAVRILCSVCKF 344 (407)
Q Consensus 329 ~~~e~a~~~L~~l~~~ 344 (407)
+..-+|+++|+.+...
T Consensus 573 ersY~~~siLa~ll~~ 588 (699)
T KOG3665|consen 573 ERSYNAASILALLLSD 588 (699)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 6677788888888775
No 442
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=40.22 E-value=69 Score=30.15 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=44.0
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC--------------hhHHHHHHhcCcHHHHHHHhhcc
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQS--------------ERNRSCLEAAGAIEFLATIITKS 151 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~--------------~~~r~~i~~~G~i~~Lv~lL~~~ 151 (407)
..-+..++..|.+++ ..+..|+++|..++.+. ..|...+.+.|+++.|+.+|...
T Consensus 59 ~~~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~~ 128 (293)
T PF07923_consen 59 KDFIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKMF 128 (293)
T ss_pred HHHHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455778888888877 78899999999887542 34777888899999999999754
No 443
>PLN03205 ATR interacting protein; Provisional
Probab=39.59 E-value=1.4e+02 Score=29.28 Aligned_cols=111 Identities=14% Similarity=0.138 Sum_probs=65.0
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHh----cCHhhHHHHHhccCchHHHHHHHHcC-----CchhhHHHHHHHHHHhccC
Q 040073 275 VLVDLLLDVTERRVCELMLNVLDLLC----RCAEGRAELLKHGAGLAVVSKKILRV-----SHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 275 ~Lv~lL~~~~~~~~~~~al~~L~~L~----~~~~~r~~i~~~~g~i~~Lv~~l~~~-----s~~~~e~a~~~L~~l~~~~ 345 (407)
+|+.+-.-+ ...++..++.+|..+- .+.....+-.+ ..--.|..+|.+. ....+-.|++++..+...+
T Consensus 327 aLLdLC~v~-n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~--~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIlmss 403 (652)
T PLN03205 327 PLLDLCKAE-TAVLVHRSLRVLHVLLEHICGDEKRFEASWD--ANWHSLFELMNQIASIRTEEDVKLEALSIMNIIVMST 403 (652)
T ss_pred HHHHHHhcC-chhhhHHHHHHHHHHHHHHhCCccccccccc--ccHHHHHHHHHHHHhccchhheeeehhhhhHHhhhcc
Confidence 344444333 4455556666555443 32221122222 1234455545432 2556777888888887765
Q ss_pred CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 346 ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 346 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
....-++.-.+.-.++.+-.+|+....-.+|+.|..+|.+|=.
T Consensus 404 na~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLLN 446 (652)
T PLN03205 404 DAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLLN 446 (652)
T ss_pred chhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHHc
Confidence 4433455555567788888899877778889999988877643
No 444
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=39.47 E-value=71 Score=30.07 Aligned_cols=54 Identities=24% Similarity=0.357 Sum_probs=43.2
Q ss_pred hhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC---------------chHHHHHhcCchHHHHHHhhc
Q 040073 226 QEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG---------------RNRIKAVEGGGVSVLVDLLLD 282 (407)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~---------------~n~~~~v~~G~v~~Lv~lL~~ 282 (407)
...+..+++-|... +...+-.|+++|..++.+. .|...+.+.|++++|+++|..
T Consensus 59 ~~~i~~ll~~L~~~---~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~~ 127 (293)
T PF07923_consen 59 KDFIEKLLDQLESS---DSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLKM 127 (293)
T ss_pred HHHHHHHHHhcccc---chhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 35777888888877 7888888899988887632 167778889999999999975
No 445
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=39.35 E-value=14 Score=20.89 Aligned_cols=8 Identities=38% Similarity=0.837 Sum_probs=3.6
Q ss_pred Cccccccc
Q 040073 48 CPVTKQVL 55 (407)
Q Consensus 48 cP~~~~~~ 55 (407)
||+|.+.+
T Consensus 4 CPiC~~~v 11 (26)
T smart00734 4 CPVCFREV 11 (26)
T ss_pred CCCCcCcc
Confidence 44444443
No 446
>PRK01343 zinc-binding protein; Provisional
Probab=39.07 E-value=26 Score=24.05 Aligned_cols=14 Identities=14% Similarity=0.076 Sum_probs=10.3
Q ss_pred cccCccccccCcCc
Q 040073 9 HFLCPISLQLMRDP 22 (407)
Q Consensus 9 ~~~Cpi~~~~~~dP 22 (407)
...||||+..+..+
T Consensus 9 ~~~CP~C~k~~~~~ 22 (57)
T PRK01343 9 TRPCPECGKPSTRE 22 (57)
T ss_pred CCcCCCCCCcCcCC
Confidence 46899999876543
No 447
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.50 E-value=6.1e+02 Score=28.13 Aligned_cols=138 Identities=16% Similarity=0.091 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-------CCchHHHHHHHHHhcCC---ChhHHHhHhhccch
Q 040073 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-------GSDECDEALSILYHLNV---SESYLKSIVINNGE 184 (407)
Q Consensus 115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-------~~~~~~~a~~~L~~L~~---~~~~~~~~i~~~gg 184 (407)
..|+..+..+++. +-++.+ .|.++.+++.|.+... .. ..+-|+.+++.|+. .+...+..+..
T Consensus 390 ~Aa~~~l~~~~~K--R~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~r-qkdGAL~~vgsl~~~L~K~s~~~~~mE~--- 461 (1010)
T KOG1991|consen 390 TAALDFLTTLVSK--RGKETL--PKILSFIVDILTRYKEASPPNKNPR-QKDGALRMVGSLASILLKKSPYKSQMEY--- 461 (1010)
T ss_pred HHHHHHHHHHHHh--cchhhh--hhHHHHHHHHHHhhcccCCCccChh-hhhhHHHHHHHHHHHHccCCchHHHHHH---
Confidence 4455556555543 111111 3567888888873321 12 26677777777651 11111222221
Q ss_pred hhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073 185 EFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR 264 (407)
Q Consensus 185 ~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~ 264 (407)
..++.+.-.++++.--.|.+|++++..++..+=....... .++..-.+.|.++ .+..++-.|+-||.-+-++.+..
T Consensus 462 flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d--~~lPV~VeAalALq~fI~~~~~~ 537 (1010)
T KOG1991|consen 462 FLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLND--NELPVRVEAALALQSFISNQEQA 537 (1010)
T ss_pred HHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccC--CcCchhhHHHHHHHHHHhcchhh
Confidence 1334444556777778899999999999854322222222 3566667777643 26788999999999888766544
No 448
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=36.96 E-value=31 Score=32.34 Aligned_cols=51 Identities=16% Similarity=0.300 Sum_probs=33.5
Q ss_pred CCcccCcccccc--------------CcCc-----eecCCcccccHHHHHHHHhc---CC----CCCCccccccccc
Q 040073 7 PAHFLCPISLQL--------------MRDP-----VTVSTGITYDRVNIERWLFT---CK----NNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~--------------~~dP-----v~~~~g~t~~r~~i~~~~~~---~~----~~~cP~~~~~~~~ 57 (407)
+.+-.||+|..+ +.|+ --.||||.-......-|-.- +| +..||.|.+.+..
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g 415 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG 415 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence 456789999763 1222 13479999888777776542 12 3579999887643
No 449
>PF12331 DUF3636: Protein of unknown function (DUF3636) ; InterPro: IPR022093 This domain family is found in eukaryotes, and is approximately 160 amino acids in length.
Probab=36.89 E-value=66 Score=26.93 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=34.3
Q ss_pred hHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH
Q 040073 287 RVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL 324 (407)
Q Consensus 287 ~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~ 324 (407)
.++-.|+.+|..++.++.|..++..|..+||.||..|.
T Consensus 109 ~lRl~aL~~L~~fa~s~~G~~~LA~h~~Ai~RLv~~L~ 146 (149)
T PF12331_consen 109 TLRLEALRTLTSFAFSPFGALQLASHPTAIPRLVRALH 146 (149)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHhCchhHHHHHHHHH
Confidence 56778999999999999999999999999999999764
No 450
>PF12660 zf-TFIIIC: Putative zinc-finger of transcription factor IIIC complex; InterPro: IPR024764 This zinc-finger domain is at the very C terminus of a number of different TFIIIC subunit proteins. This domain might be involved in protein-DNA and/or protein-protein interactions [].; PDB: 2J04_C.
Probab=36.88 E-value=9.6 Score=29.55 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=16.3
Q ss_pred ccCccccccC--cCceec--CCcccccHHHHHHHHhc-CCCCCCccccccccc
Q 040073 10 FLCPISLQLM--RDPVTV--STGITYDRVNIERWLFT-CKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~--~dPv~~--~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~~ 57 (407)
=.||+|.+.+ .|+... ..||+|.|=++.----. -+.+.||.|+...-+
T Consensus 15 E~C~~C~~~i~~~~~~~~~C~~GH~w~RC~lT~l~i~~~~~r~C~~C~~~~l~ 67 (99)
T PF12660_consen 15 EKCPICGAPIPFDDLDEAQCENGHVWPRCALTFLPIQTPGVRVCPVCGRRALD 67 (99)
T ss_dssp --------------SSEEE-TTS-EEEB-SSS-SBS-SS-EEE-TTT--EEE-
T ss_pred ccccccccccccCCcCEeECCCCCEEeeeeeeeeeeccCCeeEcCCCCCEEec
Confidence 3799999854 677544 46999988443321111 124789999987543
No 451
>COG1773 Rubredoxin [Energy production and conversion]
Probab=36.68 E-value=17 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.723 Sum_probs=10.8
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|++..||.|+-
T Consensus 32 dlPd~w~CP~Cg~ 44 (55)
T COG1773 32 DLPDDWVCPECGV 44 (55)
T ss_pred hCCCccCCCCCCC
Confidence 5889999999873
No 452
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=36.23 E-value=1.7e+02 Score=25.35 Aligned_cols=68 Identities=15% Similarity=0.223 Sum_probs=53.9
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG 261 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~ 261 (407)
.++.+.++.-+.+..++..|..+|..+.... ...=...+|.||.+..++ ++.++..|...+..+....
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qG-----LvnP~~cvp~lIAL~ts~---~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQG-----LVNPKQCVPTLIALETSP---NPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcC-----CCChHHHHhHhhhhhCCC---ChHHHHHHHHHHHHHHHHh
Confidence 5677777777889999999999999876432 222224799999999988 9999999999999997643
No 453
>PRK04023 DNA polymerase II large subunit; Validated
Probab=36.13 E-value=32 Score=37.64 Aligned_cols=43 Identities=9% Similarity=-0.028 Sum_probs=26.7
Q ss_pred ccCccccccCcCceecC-Ccc-----cccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVS-TGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~-~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..||=|+....-. .-+ ||. -||..| .+. .+...||.|+.....
T Consensus 627 RfCpsCG~~t~~f-rCP~CG~~Te~i~fCP~C--G~~--~~~y~CPKCG~El~~ 675 (1121)
T PRK04023 627 RKCPSCGKETFYR-RCPFCGTHTEPVYRCPRC--GIE--VEEDECEKCGREPTP 675 (1121)
T ss_pred ccCCCCCCcCCcc-cCCCCCCCCCcceeCccc--cCc--CCCCcCCCCCCCCCc
Confidence 5788888764221 222 773 488888 221 235779999988765
No 454
>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=35.84 E-value=4.3e+02 Score=27.38 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=91.0
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH-------HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR-------IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~-------~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
|-++.||+.++++ +++.+.+++..|.....+.... .++.+-. -+-|++.-..-.+.+.+..-+.+|..|
T Consensus 47 ~dLellVeriqd~---d~~l~~~sLn~LkeviksStSsmtavpkplkfLrp~-y~dl~~iydkw~~~n~K~~LaDilS~l 122 (881)
T COG5110 47 GDLELLVERIQDP---DIDLQNNSLNMLKEVIKSSTSSMTAVPKPLKFLRPN-YLDLLEIYDKWLEGNKKRWLADILSAL 122 (881)
T ss_pred ccHHHHHHHhhCC---ChHHHHHHHHHHHHHHhccccccccCCchhhhcCCC-cchHHHHHhhccCcchhhHHHHHHHHH
Confidence 5589999999998 9999999999999876533321 2223322 222333333323556777788889988
Q ss_pred hcCHh--hHHHHHhc--cC-----------chHHHHHHHHcC----------C-chhhHHHHHHHHHHhccCCchHHHHH
Q 040073 300 CRCAE--GRAELLKH--GA-----------GLAVVSKKILRV----------S-HAASDRAVRILCSVCKFSATARVLQE 353 (407)
Q Consensus 300 ~~~~~--~r~~i~~~--~g-----------~i~~Lv~~l~~~----------s-~~~~e~a~~~L~~l~~~~~~~~~~~~ 353 (407)
|...+ ++.+.... .| .|..|..-+-.. + ....+.++.+.--+-+++.+.+...-
T Consensus 123 ~m~yse~~kh~sL~YRl~g~i~D~~~WGHeYvrhLa~eI~ev~n~~~e~daps~~dt~~l~l~ivpfflkHNaE~dAiDl 202 (881)
T COG5110 123 CMVYSENGKHKSLAYRLEGNIIDLKEWGHEYVRHLAGEIAEVKNDQNEMDAPSFADTRDLGLEIVPFFLKHNAEFDAIDL 202 (881)
T ss_pred eeecccccchhhHHHHhhcccCCHHHHHHHHHHHHHHHHHHHhcchhhccCCchhHHHHHHHHHhHHHHhcccchHHHHH
Confidence 87443 23322211 11 233343333221 1 35678888888888888888778888
Q ss_pred HHHhChHHHHHHHHhcCC
Q 040073 354 MLQVGVVSKLCLVLQVDA 371 (407)
Q Consensus 354 ~~~~g~i~~Ll~ll~~~~ 371 (407)
.++.|+|++++.+...+.
T Consensus 203 L~Evg~Iekv~~fVd~~n 220 (881)
T COG5110 203 LVEVGGIEKVLDFVDTHN 220 (881)
T ss_pred HHHhcchhhhhhhhcccc
Confidence 899999999999887554
No 455
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=35.46 E-value=43 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc
Q 040073 201 SRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 201 ~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 237 (407)
+|..|+.+|..+.. ..++++|++.|+
T Consensus 1 VR~~Aa~aLg~igd-----------~~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD-----------PRAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S-----------HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC-----------HHHHHHHHHHhc
Confidence 35677777777642 246888888775
No 456
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=35.21 E-value=23 Score=32.57 Aligned_cols=48 Identities=23% Similarity=0.356 Sum_probs=35.0
Q ss_pred ccCccccccCcCceecC----------------Cccc-ccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVS----------------TGIT-YDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~----------------~g~t-~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
+.|+||++.|..|=.|. ||-- -||+.+..+.... ..+.|+.|++.+..
T Consensus 188 c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl 255 (279)
T KOG2462|consen 188 CECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFAL 255 (279)
T ss_pred cccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHH
Confidence 57999999999876542 3323 3899999988753 25789999987644
No 457
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=34.92 E-value=1e+02 Score=24.46 Aligned_cols=40 Identities=28% Similarity=0.155 Sum_probs=33.7
Q ss_pred hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073 228 FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG 270 (407)
Q Consensus 228 ~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~ 270 (407)
+|+.||+-|.+. ++++...|...|...|..+..-..++..
T Consensus 9 ~i~lLv~QL~D~---~~~V~~~A~~iL~e~c~~~~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDP---SPEVVAAALEILEEACEDKEYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCC---CHHHHHHHHHHHHHHHhchhhHHHHHHc
Confidence 489999999888 8999999999999999877666666654
No 458
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=34.57 E-value=4.5e+02 Score=26.22 Aligned_cols=63 Identities=24% Similarity=0.437 Sum_probs=40.7
Q ss_pred CCccccccccccCCCCCCccHHH-HHHHHHHHHhccCCCcccCC---------------CCCCCCChhhHHHHHHHhcCC
Q 040073 47 TCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTINACHGIERIP---------------TPQPPVDKTQIVKILNDAKKS 110 (407)
Q Consensus 47 ~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~~~~~~~~~~p---------------~~~~~~~~~~i~~ll~~L~~~ 110 (407)
.|-++++.-.+ |+.....++.+ |++|+++..+++..+++.-| .|++ .....||.|+..++..
T Consensus 2 ~CaISgEvP~~-PVvS~~Sg~vfEkrLIEqyI~e~G~DPIt~~pLs~eelV~Ik~~~~v~pk~-~satSIPalL~~lQdE 79 (506)
T KOG0289|consen 2 VCAISGEVPEE-PVVSPVSGHVFEKRLIEQYIAETGKDPITNEPLSIEELVEIKVPAQVRPKP-PSATSIPALLKTLQDE 79 (506)
T ss_pred eecccCCCCCC-ccccccccchHHHHHHHHHHHHcCCCCCCCCcCCHHHeeeccccccccCCC-CCccchHHHHHHHHHH
Confidence 47777776555 54344455555 99999999999876553211 1122 3355689999888766
Q ss_pred C
Q 040073 111 P 111 (407)
Q Consensus 111 ~ 111 (407)
+
T Consensus 80 W 80 (506)
T KOG0289|consen 80 W 80 (506)
T ss_pred H
Confidence 5
No 459
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=34.54 E-value=20 Score=24.87 Aligned_cols=13 Identities=23% Similarity=0.626 Sum_probs=10.7
Q ss_pred CCCCccccccccc
Q 040073 45 NNTCPVTKQVLQE 57 (407)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (407)
|++||.||.++..
T Consensus 3 HkHC~~CG~~Ip~ 15 (59)
T PF09889_consen 3 HKHCPVCGKPIPP 15 (59)
T ss_pred CCcCCcCCCcCCc
Confidence 7899999987754
No 460
>PF08273 Prim_Zn_Ribbon: Zinc-binding domain of primase-helicase; InterPro: IPR013237 This entry is represented by bacteriophage T7 Gp4. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry represents a zinc binding domain found in the N-terminal region of the bacteriophage T7 Gp4 and P4 alpha protein. P4 is a multifunctional protein with origin recognition, helicase and primase activities [, , ].; GO: 0003896 DNA primase activity, 0004386 helicase activity, 0008270 zinc ion binding; PDB: 1NUI_B.
Probab=34.16 E-value=17 Score=23.02 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=12.6
Q ss_pred cCccccccCcCcee-cC----CcccccHHH
Q 040073 11 LCPISLQLMRDPVT-VS----TGITYDRVN 35 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~-~~----~g~t~~r~~ 35 (407)
-||+|.. +|-.. .+ .|+-|||+|
T Consensus 5 pCP~CGG--~DrFri~~d~~~~G~~~C~~C 32 (40)
T PF08273_consen 5 PCPICGG--KDRFRIFDDKDGRGTWICRQC 32 (40)
T ss_dssp --TTTT---TTTEEEETT----S-EEETTT
T ss_pred CCCCCcC--ccccccCcCcccCCCEECCCC
Confidence 4899987 55554 33 378888877
No 461
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=34.12 E-value=66 Score=25.37 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC
Q 040073 114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA 153 (407)
Q Consensus 114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~ 153 (407)
-...++.+..++.. |+.=..+++.|+++.|+.+|.+...
T Consensus 63 Ld~~Ik~l~~La~~-P~LYp~lv~l~~v~sL~~LL~HeN~ 101 (108)
T PF08216_consen 63 LDEEIKKLSVLATA-PELYPELVELGAVPSLLGLLSHENT 101 (108)
T ss_pred HHHHHHHHHHccCC-hhHHHHHHHcCCHHHHHHHHCCCCc
Confidence 34567788888775 7777788899999999999998765
No 462
>KOG2272 consensus Focal adhesion protein PINCH-1, contains LIM domains [Signal transduction mechanisms; Cytoskeleton]
Probab=33.92 E-value=24 Score=31.99 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=35.1
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHH---HHhcCCCCCCccccccc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIER---WLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~---~~~~~~~~~cP~~~~~~ 55 (407)
..+|-.++.||-|.+-|.-||--.|--..+-..|.. .|.- .++.|-+|.+|+
T Consensus 177 aRevk~eLyClrChD~mgipiCgaC~rpIeervi~amgKhWHv-eHFvCa~CekPF 231 (332)
T KOG2272|consen 177 AREVKGELYCLRCHDKMGIPICGACRRPIEERVIFAMGKHWHV-EHFVCAKCEKPF 231 (332)
T ss_pred hhhhccceeccccccccCCcccccccCchHHHHHHHhccccch-hheeehhcCCcc
Confidence 345777888888888888888777766666554432 2322 278888887764
No 463
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=33.82 E-value=6.3e+02 Score=27.22 Aligned_cols=102 Identities=12% Similarity=0.060 Sum_probs=63.5
Q ss_pred HHHHH-HHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHH
Q 040073 229 FTEIV-NVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRA 307 (407)
Q Consensus 229 i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~ 307 (407)
..++| +++.+. ++-.+..++.++.---....| .++|..|+..--++.+.+++..|+.+|.-++..+.
T Consensus 520 Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp--- 587 (929)
T KOG2062|consen 520 ADPLIKELLRDK---DPILRYGGMYTLALAYVGTGN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP--- 587 (929)
T ss_pred hHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCc------hhhHHHhhcccccccchHHHHHHHHHheeeEecCh---
Confidence 34455 455665 777777776554421111111 24567777774333478999999999987765331
Q ss_pred HHHhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhccCCch
Q 040073 308 ELLKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCKFSATA 348 (407)
Q Consensus 308 ~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~ 348 (407)
...|..|.+|.. .++.++-.++-+|..-|.+.+++
T Consensus 588 ------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~ 623 (929)
T KOG2062|consen 588 ------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK 623 (929)
T ss_pred ------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH
Confidence 234556665544 36788888888888888877664
No 464
>TIGR02605 CxxC_CxxC_SSSS putative regulatory protein, FmdB family. This model represents a region of about 50 amino acids found in a number of small proteins in a wide range of bacteria. The region begins usually with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One member of this family is has been noted as a putative regulatory protein, designated FmdB (PubMed:8841393). Most members of this family have a C-terminal region containing highly degenerate sequence, such as SSTSESTKSSGSSGSSGSSESKASGSTEKSTSSTTAAAAV in Mycobacterium tuberculosis and VAVGGSAPAPSPAPRAGGGGGGCCGGGCCG in Streptomyces avermitilis. These low complexity regions, which are not included in the model, resemble low-complexity C-terminal regions of some heterocycle-containing bacteriocin precursors.
Probab=33.76 E-value=10 Score=25.29 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=13.9
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
.|||+|+... . ........||.|+.
T Consensus 10 ~Cg~~fe~~~--~-~~~~~~~~CP~Cg~ 34 (52)
T TIGR02605 10 ACGHRFEVLQ--K-MSDDPLATCPECGG 34 (52)
T ss_pred CCCCEeEEEE--e-cCCCCCCCCCCCCC
Confidence 4677776321 1 11122457999997
No 465
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=33.53 E-value=34 Score=33.15 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=24.3
Q ss_pred ecCCccccc-----HHHHHHHHhcC-----------CCCCCccccccccc
Q 040073 24 TVSTGITYD-----RVNIERWLFTC-----------KNNTCPVTKQVLQE 57 (407)
Q Consensus 24 ~~~~g~t~~-----r~~i~~~~~~~-----------~~~~cP~~~~~~~~ 57 (407)
.-+|++=|| .+|+-+||... |.-.||.|+..+.-
T Consensus 303 ~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi 352 (358)
T PF10272_consen 303 EPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI 352 (358)
T ss_pred CCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence 345666665 48999999652 35689999988754
No 466
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=33.19 E-value=21 Score=33.33 Aligned_cols=28 Identities=7% Similarity=0.185 Sum_probs=21.0
Q ss_pred ecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 24 TVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 24 ~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
.++|.|.||..|-.. +..+.||.|..++
T Consensus 106 mIPCkHvFCl~CAr~----~~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 106 MIPCKHVFCLECARS----DSDKICPLCDDRV 133 (389)
T ss_pred ccccchhhhhhhhhc----CccccCcCcccHH
Confidence 679999999988433 2257899997653
No 467
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=32.69 E-value=31 Score=29.46 Aligned_cols=32 Identities=16% Similarity=0.552 Sum_probs=24.4
Q ss_pred cCCcccccHHHHHHHHhcC----CC-----CCCcccccccc
Q 040073 25 VSTGITYDRVNIERWLFTC----KN-----NTCPVTKQVLQ 56 (407)
Q Consensus 25 ~~~g~t~~r~~i~~~~~~~----~~-----~~cP~~~~~~~ 56 (407)
+.||+.|-+-|+.+|+..- ++ ..||.|..++.
T Consensus 188 ~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia 228 (234)
T KOG3268|consen 188 IQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA 228 (234)
T ss_pred cccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence 4699999999999999741 11 46999977653
No 468
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=32.50 E-value=74 Score=20.18 Aligned_cols=40 Identities=30% Similarity=0.362 Sum_probs=25.6
Q ss_pred HHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 209 LKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 209 L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
|..+...++. +.....+...+...+.+. ++.++++|..+|
T Consensus 3 l~~iv~~dp~---ll~~~~v~~~i~~rl~D~---s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPT---LLDSSDVQSAIIRRLSDS---SPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCcc---ccchHHHHHHHHHHhcCC---ChHHHHHHHHHC
Confidence 4444433332 333345667777888888 899999887653
No 469
>PHA02768 hypothetical protein; Provisional
Probab=32.30 E-value=50 Score=22.55 Aligned_cols=37 Identities=19% Similarity=0.256 Sum_probs=21.1
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCC-CCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCK-NNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~-~~~cP~~~~~~~~ 57 (407)
|.||.|++.|.. ++.+..+..... ...|..|+..+..
T Consensus 6 y~C~~CGK~Fs~-----------~~~L~~H~r~H~k~~kc~~C~k~f~~ 43 (55)
T PHA02768 6 YECPICGEIYIK-----------RKSMITHLRKHNTNLKLSNCKRISLR 43 (55)
T ss_pred cCcchhCCeecc-----------HHHHHHHHHhcCCcccCCcccceecc
Confidence 578887776643 234444444321 4567888776543
No 470
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.06 E-value=6.7e+02 Score=26.94 Aligned_cols=146 Identities=20% Similarity=0.157 Sum_probs=76.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhcc--CC----chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-C
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEV--AD----PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-W 260 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~----~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~ 260 (407)
|.|.+-|+-.|..+|.+|+..+.++--. ++ .+..+... -...|.++|+++ .+.++..|..-+...-+ .
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k--Qf~~l~~LL~d~---~p~VRS~a~~gv~k~~s~f 251 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK--QFEELYSLLEDP---YPMVRSTAILGVCKITSKF 251 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH--HHHHHHHHhcCC---CchHHHHHHHHHHHHHHHH
Confidence 3455666778999999999999997432 22 22234443 268899999988 78777777654443321 1
Q ss_pred CchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073 261 GRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC 339 (407)
Q Consensus 261 ~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 339 (407)
.+-. ..++. ..+..+..-+...+..+++-....-|-.+..++..-. +.+ .++|.+=-.|.+.+.+++-.++.+|.
T Consensus 252 We~iP~~i~~-~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~-~le--~~Lpal~~~l~D~se~VRvA~vd~ll 327 (1005)
T KOG1949|consen 252 WEMIPPTILI-DLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHP-LLE--QLLPALRYSLHDNSEKVRVAFVDMLL 327 (1005)
T ss_pred HHHcCHHHHH-HHHHHHHHHhhhccchheehhHhcCcHHHHcCccchh-HHH--HHHHhcchhhhccchhHHHHHHHHHH
Confidence 1100 00000 0111122222222233555555555555555544322 222 24555444455556677766666665
Q ss_pred HHh
Q 040073 340 SVC 342 (407)
Q Consensus 340 ~l~ 342 (407)
.+=
T Consensus 328 ~ik 330 (1005)
T KOG1949|consen 328 KIK 330 (1005)
T ss_pred HHH
Confidence 554
No 471
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=31.80 E-value=6.7 Score=36.93 Aligned_cols=44 Identities=18% Similarity=0.202 Sum_probs=20.2
Q ss_pred ccCccccccCcCceecCC---c--ccccHHHHHHHHhcCCCCCCccccccc
Q 040073 10 FLCPISLQLMRDPVTVST---G--ITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~---g--~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
=.||+|+..-.--++..- | |-+|--|=.+|--. ...||.|+..-
T Consensus 173 g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~--R~~Cp~Cg~~~ 221 (290)
T PF04216_consen 173 GYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV--RIKCPYCGNTD 221 (290)
T ss_dssp SS-TTT---EEEEEEE------EEEEEETTT--EEE----TTS-TTT---S
T ss_pred CcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec--CCCCcCCCCCC
Confidence 489999986555555554 6 44677777777532 67899999753
No 472
>COG5319 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.99 E-value=68 Score=25.87 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=15.5
Q ss_pred cccccHHHHHHHHhcC---------CCCCCccccccc
Q 040073 28 GITYDRVNIERWLFTC---------KNNTCPVTKQVL 55 (407)
Q Consensus 28 g~t~~r~~i~~~~~~~---------~~~~cP~~~~~~ 55 (407)
||-| +-||... |-.+||+|+..-
T Consensus 11 ~HeF-----EGWF~ssaDfd~Q~~rgLv~CPvCgs~~ 42 (142)
T COG5319 11 GHEF-----EGWFGSSADFDRQRERGLVTCPVCGSTE 42 (142)
T ss_pred CCcc-----cccccCchhHHHHHHcCceeCCCCCcHH
Confidence 6777 4577542 346899998753
No 473
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=30.20 E-value=26 Score=33.86 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=27.2
Q ss_pred CCcccCccccccCcCce----ecCCcccccHHHHHHH
Q 040073 7 PAHFLCPISLQLMRDPV----TVSTGITYDRVNIERW 39 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv----~~~~g~t~~r~~i~~~ 39 (407)
..+|.||+...+|.+-- +-.+|..||-..|++.
T Consensus 99 ~geyhcPvlfk~FT~~sHIvAv~TTGNvy~~eai~~L 135 (518)
T KOG0883|consen 99 EGEYHCPVLFKVFTRFSHIVAVRTTGNVYSWEAIEEL 135 (518)
T ss_pred CCcccCceeeeeecccceEEEEEecCceeeHHHHHHh
Confidence 46799999999998753 3368999999999983
No 474
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=29.67 E-value=4.6e+02 Score=24.28 Aligned_cols=152 Identities=13% Similarity=0.119 Sum_probs=86.3
Q ss_pred ChhHHHHHHHHHHHhhccCCchhhhhch--------hhhHHHHHHHcccCCCCC----HHHHHHHHHHHHHhCCCCchHH
Q 040073 198 NYQSRSYAIMLLKSIFEVADPFQLISVK--------QEFFTEIVNVLRDHHQFS----QQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 198 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--------~g~i~~Lv~lL~~~~~~~----~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
+...-+.+..+|..|....++ ..++.. -+.+|.++.-+.++ + .......+..|..+|...
T Consensus 75 Ss~t~e~tl~lL~~L~~~~~~-~lig~~~~rll~~~la~LP~ll~~~d~~---~~i~~~~~~~~~A~~La~~a~~~---- 146 (262)
T PF14225_consen 75 SSSTYELTLRLLSRLTPLPDD-PLIGDSQSRLLFLLLALLPRLLHAFDDP---NPIQPDQECIEIAEALAQVAEAQ---- 146 (262)
T ss_pred CCCcHHHHHHHHHHHhcCCCc-cccCCCCccHHHHHHHHHHHHHHHhccc---ccccccHHHHHHHHHHHHHHHhC----
Confidence 455667888888888765432 222221 23455555556555 4 234456667788777321
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC--HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC--AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~--~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
+.+.+..++.....+..+...+-.-.+...|+.. ++.-. ..+-.|+.++.++.+..+...+.+|..+-.
T Consensus 147 ---~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~------~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~ 217 (262)
T PF14225_consen 147 ---GLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEF------QILTFLLGLLENGPPWLRRKTLQILKVLLP 217 (262)
T ss_pred ---CCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHH------HHHHHHHHHHhCCcHHHHHHHHHHHHHHhc
Confidence 1123444444444443333333333344444331 22111 234467777777778889999999999987
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcC
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVD 370 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~ 370 (407)
...-+ .. .....+.+|+++|+.+
T Consensus 218 ~~d~~---~~-~~~dlispllrlL~t~ 240 (262)
T PF14225_consen 218 HVDMR---SP-HGADLISPLLRLLQTD 240 (262)
T ss_pred cccCC---CC-cchHHHHHHHHHhCCc
Confidence 64322 22 5567999999999854
No 475
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=9.9e+02 Score=28.17 Aligned_cols=261 Identities=17% Similarity=0.213 Sum_probs=129.4
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhcc-chhhHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINN-GEEFLE 188 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~-gg~~i~ 188 (407)
..+..|+.-+..+++.. ++.+.- --.||.|.+.=.+++. -...|..-|++.-..+ .+..+.+. + +.+.
T Consensus 972 nSk~GaAfGf~~i~~~a---~~kl~p~l~kLIPrLyRY~yDP~~---~Vq~aM~sIW~~Li~D--~k~~vd~y~n-eIl~ 1042 (1702)
T KOG0915|consen 972 NSKKGAAFGFGAIAKQA---GEKLEPYLKKLIPRLYRYQYDPDK---KVQDAMTSIWNALITD--SKKVVDEYLN-EILD 1042 (1702)
T ss_pred hcccchhhchHHHHHHH---HHhhhhHHHHhhHHHhhhccCCcH---HHHHHHHHHHHHhccC--hHHHHHHHHH-HHHH
Confidence 44455555565665542 222221 1135555554333333 2556666666622222 24444331 1 2566
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHH---HHHHHHhCC--CC-c
Q 040073 189 SLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA---LKLLVELCP--WG-R 262 (407)
Q Consensus 189 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A---~~aL~~L~~--~~-~ 262 (407)
-|+.-|.+..+.+|+.++.+|..|....+.....-.-......+.+.+.+= ...++++| +.+|..|+. .+ .
T Consensus 1043 eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI---KEsVR~aa~~~~~~lsKl~vr~~d~~ 1119 (1702)
T KOG0915|consen 1043 ELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI---KESVREAADKAARALSKLCVRICDVT 1119 (1702)
T ss_pred HHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhcccC
Confidence 666666678899999999999999887765443322122333444444322 33444444 556666654 11 1
Q ss_pred h--HHHHHhcCchHHHHH--HhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHcCCch--------
Q 040073 263 N--RIKAVEGGGVSVLVD--LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILRVSHA-------- 329 (407)
Q Consensus 263 n--~~~~v~~G~v~~Lv~--lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~~s~~-------- 329 (407)
| +..-+=..++|.|++ .+ +. -.+++..++.++..|+.+... ++.-+ +..||.|+.....-.+.
T Consensus 1120 ~~~~~~~~l~~iLPfLl~~gim-s~-v~evr~~si~tl~dl~Kssg~--~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r 1195 (1702)
T KOG0915|consen 1120 NGAKGKEALDIILPFLLDEGIM-SK-VNEVRRFSIGTLMDLAKSSGK--ELKPHFPKLIPLLLNAYSELEPQVLNYLSLR 1195 (1702)
T ss_pred CcccHHHHHHHHHHHHhccCcc-cc-hHHHHHHHHHHHHHHHHhchh--hhcchhhHHHHHHHHHccccchHHHHHHHHh
Confidence 1 111111234555442 22 11 368889999999999985543 22222 23455555533221111
Q ss_pred ---hhHHHHHHH-HHHhccCCchHHHHHHHH-------hChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 330 ---ASDRAVRIL-CSVCKFSATARVLQEMLQ-------VGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 330 ---~~e~a~~~L-~~l~~~~~~~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
....|+..+ .+.++.++--+.....++ ...+|.+.++++++-.-.+|--++..+-+|..
T Consensus 1196 ~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~ 1265 (1702)
T KOG0915|consen 1196 LINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQ 1265 (1702)
T ss_pred hhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHH
Confidence 111222222 122332221111111111 24688888888876455667777777776655
No 476
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=29.52 E-value=17 Score=24.53 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=7.0
Q ss_pred CCCcccccccccc
Q 040073 46 NTCPVTKQVLQET 58 (407)
Q Consensus 46 ~~cP~~~~~~~~~ 58 (407)
..||+|+.+++.+
T Consensus 21 ~~CPlC~r~l~~e 33 (54)
T PF04423_consen 21 GCCPLCGRPLDEE 33 (54)
T ss_dssp EE-TTT--EE-HH
T ss_pred CcCCCCCCCCCHH
Confidence 3899999988763
No 477
>PRK07758 hypothetical protein; Provisional
Probab=29.27 E-value=33 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.308 Sum_probs=18.4
Q ss_pred CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 27 TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 27 ~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
-||+|.++. .-++||.|.......+ ++.|-
T Consensus 12 ~~~~~~~~~--------~~~~~~~~~~~~~~~~--~~~~~ 41 (95)
T PRK07758 12 KGHEYYKSS--------DCPTCPTCEKERKPKE--GFLSL 41 (95)
T ss_pred cccceeccC--------CCCCCcccccccCCCC--CCCcc
Confidence 488885532 2578899987654432 45443
No 478
>PHA00732 hypothetical protein
Probab=29.14 E-value=66 Score=23.74 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=21.8
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCcccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~ 56 (407)
|.|++|+..|.. +..+.+.... .....|+.|++.+.
T Consensus 2 y~C~~Cgk~F~s-----------~s~Lk~H~r~~H~~~~C~~CgKsF~ 38 (79)
T PHA00732 2 FKCPICGFTTVT-----------LFALKQHARRNHTLTKCPVCNKSYR 38 (79)
T ss_pred ccCCCCCCccCC-----------HHHHHHHhhcccCCCccCCCCCEeC
Confidence 567777665543 4445555542 22457999988664
No 479
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=28.49 E-value=38 Score=23.44 Aligned_cols=9 Identities=33% Similarity=0.497 Sum_probs=6.1
Q ss_pred CCCCccccc
Q 040073 45 NNTCPVTKQ 53 (407)
Q Consensus 45 ~~~cP~~~~ 53 (407)
...||.|+-
T Consensus 48 ~Y~CP~CGF 56 (59)
T PRK14890 48 PYTCPKCGF 56 (59)
T ss_pred ceECCCCCC
Confidence 466888763
No 480
>cd01408 SIRT1 SIRT1: Eukaryotic group (class1) which includes human sirtuins SIRT1-3 and yeast Hst1-4; and are members of the SIR2 family of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation. Sir2 proteins have been shown to regulate gene silencing, DNA repair, and life span. The most-studied function, gene silencing, involves the inactivation of chromosome domains containing key regulatory genes by packaging them into a specialized chromatin structure that is inaccessible to DNA-binding proteins. The nuclear SIRT1 has been shown to target the p53 tumor suppressor protein for deacetylation to suppress DNA damage, and the cytoplasmic SIRT2 homolog has been shown to target alpha-tubulin for deacetylation for the maintenance of cell integrity.
Probab=27.76 E-value=56 Score=29.66 Aligned_cols=31 Identities=13% Similarity=0.208 Sum_probs=21.7
Q ss_pred CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 27 TGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 27 ~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
||+.|++..+.........+.||.|+..+.+
T Consensus 122 C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP 152 (235)
T cd01408 122 CKHKYPGDWMREDIFNQEVPKCPRCGGLVKP 152 (235)
T ss_pred CCCcCCHHHHHHHHhCCCCccCCCCCCCccC
Confidence 8888888666655433224789999877665
No 481
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=27.72 E-value=4.7e+02 Score=27.39 Aligned_cols=133 Identities=17% Similarity=0.104 Sum_probs=80.5
Q ss_pred ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHH
Q 040073 198 NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSV 275 (407)
Q Consensus 198 ~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~ 275 (407)
++.+|..+...|+.....-+. +....-++...-.+|.+. +..++......|..|+...++...+++ +-.-..
T Consensus 288 ~d~IRv~c~~~L~dwi~lvP~---yf~k~~~lry~GW~LSDn---~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRFk~r 361 (740)
T COG5537 288 DDVIRVLCSMSLRDWIGLVPD---YFRKILGLRYNGWSLSDN---HEGVRLLVSKILLFLCSRIPHTDAIRRFVERFKDR 361 (740)
T ss_pred hHHHHHHHHHHHHHHHhcchH---HHHhhhcccccccccccc---hHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 444555555555544332221 222222456666667666 789999999999999998887774443 234566
Q ss_pred HHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 276 LVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 276 Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
+++++..+.+ -++-.++.++..+...+ ..+ +..|-.+-..|++..+..++.-...+.++|+
T Consensus 362 ILE~~r~D~d-~VRi~sik~l~~lr~lg-----~L~-~SeIlIvsscmlDi~pd~r~~~~E~v~~icK 422 (740)
T COG5537 362 ILEFLRTDSD-CVRICSIKSLCYLRILG-----VLS-SSEILIVSSCMLDIIPDSRENIVESVESICK 422 (740)
T ss_pred HHHHHhhccc-hhhHHHHHHHHHHHHhc-----ccc-hhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence 7778777533 36667777766665433 112 2234444555777777766666677777775
No 482
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=27.48 E-value=2.8e+02 Score=30.18 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-CCchHHHHHHHHHhcCC
Q 040073 93 PPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-GSDECDEALSILYHLNV 170 (407)
Q Consensus 93 ~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~~ 170 (407)
-|++..+...+++.|+.+. ......+.-|.+-.... .--..-++++++..++ ..... +.+....|+..|..+-
T Consensus 20 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg-vd~aa~vka~fl~~i~---~~~~~~~~i~~~~a~~~l~~m~- 94 (844)
T TIGR00117 20 LPLNANQMAALVELLKNPPAGEEEFLLDLLTNRVPPG-VDEAAYVKAGFLAAIA---KGEAKCPLISPEKAIELLGTMQ- 94 (844)
T ss_pred CCCCHHHHHHHHHHhcCCCCccHHHHHHHHHhCCCCC-CChHHHHHHHHHHHHH---cCCCCCcccCHHHHHHHHhhcc-
Confidence 3477888889999998775 33333343333322111 0111223344333332 22211 1223566666654422
Q ss_pred ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhh
Q 040073 171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIF 213 (407)
Q Consensus 171 ~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls 213 (407)
||.-++.|+.+|.+.+.++...|+.+|.+-.
T Consensus 95 ------------gg~~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 95 ------------GGYNVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred ------------CCCCHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 2245889999998888888889999888643
No 483
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=27.38 E-value=1.1e+02 Score=24.23 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=31.8
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK 311 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~ 311 (407)
+|+.|+.-|.+. +.++...|+.+|...|..++....++.
T Consensus 9 ~i~lLv~QL~D~-~~~V~~~A~~iL~e~c~~~~~le~~v~ 47 (115)
T PF14663_consen 9 GIELLVTQLYDP-SPEVVAAALEILEEACEDKEYLEYLVS 47 (115)
T ss_pred HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhchhhHHHHHH
Confidence 488889889876 789999999999999988766655554
No 484
>PRK14138 NAD-dependent deacetylase; Provisional
Probab=26.87 E-value=1.1e+02 Score=27.83 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=21.7
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.||+.|++..+.+-+.....+.||.|+..+.+
T Consensus 124 ~C~~~~~~~~~~~~~~~~~~p~Cp~Cgg~lrP 155 (244)
T PRK14138 124 RCGKRYTVEDVIEKLEKSDVPRCDDCSGLIRP 155 (244)
T ss_pred CCCCcccHHHHHHHHhcCCCCCCCCCCCeECC
Confidence 37788887666554333335789999987765
No 485
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.86 E-value=40 Score=31.26 Aligned_cols=28 Identities=11% Similarity=0.248 Sum_probs=21.5
Q ss_pred cccHHHHHHHHhcC-----------CCCCCccccccccc
Q 040073 30 TYDRVNIERWLFTC-----------KNNTCPVTKQVLQE 57 (407)
Q Consensus 30 t~~r~~i~~~~~~~-----------~~~~cP~~~~~~~~ 57 (407)
-.||+|+-+||... |.-.||.|++.+..
T Consensus 328 ~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 328 LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 46789999999642 35789999987653
No 486
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=26.65 E-value=7.3e+02 Score=25.65 Aligned_cols=105 Identities=14% Similarity=0.114 Sum_probs=58.0
Q ss_pred hHHHHHHHHhc----CChhHHHHHHHHHHHhhc----cCCchhhhhchhhhHHHHHHHcccCC-CCCHHHHHHHHHHHHH
Q 040073 186 FLESLMRVLKC----GNYQSRSYAIMLLKSIFE----VADPFQLISVKQEFFTEIVNVLRDHH-QFSQQASKAALKLLVE 256 (407)
Q Consensus 186 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~~A~~aL~~ 256 (407)
.+..+..++++ .+..++..|..++..+.. ..+.+..... ..+++.|.+.|.+.. ..+.+-+...+.+|.|
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN 472 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGN 472 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence 35555566654 245566666666666643 2221111111 246777777775320 0145556777888888
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcc--cchhHHHHHHHHHHHHhc
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDV--TERRVCELMLNVLDLLCR 301 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~--~~~~~~~~al~~L~~L~~ 301 (407)
+.... .++.|...+... .+..++..|+.+|..++.
T Consensus 473 ~g~~~----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~ 509 (574)
T smart00638 473 AGHPS----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAK 509 (574)
T ss_pred cCChh----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 75421 234444444411 145788899999998875
No 487
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=26.60 E-value=3.1e+02 Score=21.35 Aligned_cols=69 Identities=13% Similarity=0.079 Sum_probs=44.7
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhcc----CCCCchHHHHHHHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKS----DAGSDECDEALSILY 166 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~----~~~~~~~~~a~~~L~ 166 (407)
.-+..+.++|.+++ ..+.+||..|..+.+.+ +.....+.....+..++++.... +.+..+++.+..++.
T Consensus 37 ~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~ 111 (115)
T cd00197 37 EAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQ 111 (115)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHH
Confidence 34567777888777 88999999999998874 56677777776665555541111 112334666655544
No 488
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=26.50 E-value=36 Score=18.60 Aligned_cols=9 Identities=22% Similarity=0.504 Sum_probs=4.4
Q ss_pred CCCCccccc
Q 040073 45 NNTCPVTKQ 53 (407)
Q Consensus 45 ~~~cP~~~~ 53 (407)
..+||.|+.
T Consensus 13 ~~fC~~CG~ 21 (23)
T PF13240_consen 13 AKFCPNCGT 21 (23)
T ss_pred CcchhhhCC
Confidence 344555554
No 489
>PF04064 DUF384: Domain of unknown function (DUF384); InterPro: IPR007206 This is a protein of unknown function. It is found C-terminal to another domain of unknown function (IPR007205 from INTERPRO).
Probab=26.45 E-value=1.4e+02 Score=20.63 Aligned_cols=46 Identities=24% Similarity=0.265 Sum_probs=27.7
Q ss_pred HHHHhCCCCchHHHHHhcCchHHHHHHhhc-ccchhHHHHHHHHHHHH
Q 040073 253 LLVELCPWGRNRIKAVEGGGVSVLVDLLLD-VTERRVCELMLNVLDLL 299 (407)
Q Consensus 253 aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~-~~~~~~~~~al~~L~~L 299 (407)
+|.-||....+|..+-+.| +.+++.-+.. ..++++.+.+-.+...|
T Consensus 1 ~LllL~~T~~GR~~lR~~~-vY~IlRe~h~~E~d~~V~e~~erlV~iL 47 (58)
T PF04064_consen 1 ALLLLCATREGREYLREKG-VYPILRELHKWEEDEEVQEACERLVQIL 47 (58)
T ss_pred CHhHHhccHHHHHHHHHcC-chHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4677888888999888887 4555554433 22455554444433333
No 490
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=26.38 E-value=5.5e+02 Score=27.28 Aligned_cols=134 Identities=12% Similarity=0.094 Sum_probs=78.5
Q ss_pred CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHH
Q 040073 197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVL 276 (407)
Q Consensus 197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~L 276 (407)
.+.+.+..-..-|..- .+...+.+.. ..+.+.|+..+.-+ + +....+..|..+...-+... .+.+.+|.|
T Consensus 266 ks~~eK~~Ff~~L~~~--l~~~pe~i~~-~kvlp~Ll~~~~~g---~--a~~~~ltpl~k~~k~ld~~e--yq~~i~p~l 335 (690)
T KOG1243|consen 266 KSVEEKQKFFSGLIDR--LDNFPEEIIA-SKVLPILLAALEFG---D--AASDFLTPLFKLGKDLDEEE--YQVRIIPVL 335 (690)
T ss_pred CcHHHHHHHHHHHHHH--HhhhhHHHHH-HHHHHHHHHHhhcc---c--cchhhhhHHHHhhhhccccc--cccchhhhH
Confidence 4555555544444431 1122222333 24566666666554 3 33334444444443222211 556789999
Q ss_pred HHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 277 VDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 277 v~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
++++... |..++-.-+.-+.....+= -.+++++ ...|.+..-+.+.++..++..+..+..++..
T Consensus 336 ~kLF~~~-Dr~iR~~LL~~i~~~i~~L--t~~~~~d-~I~phv~~G~~DTn~~Lre~Tlksm~~La~k 399 (690)
T KOG1243|consen 336 LKLFKSP-DRQIRLLLLQYIEKYIDHL--TKQILND-QIFPHVALGFLDTNATLREQTLKSMAVLAPK 399 (690)
T ss_pred HHHhcCc-chHHHHHHHHhHHHHhhhc--CHHhhcc-hhHHHHHhhcccCCHHHHHHHHHHHHHHHhh
Confidence 9999886 7777766666555554422 2234553 4778888888888899999999988888754
No 491
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=26.26 E-value=3.3e+02 Score=21.48 Aligned_cols=67 Identities=22% Similarity=0.332 Sum_probs=46.7
Q ss_pred hHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH-cccCCCCCHHH-HHHHHHHHHHhCCCC
Q 040073 186 FLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV-LRDHHQFSQQA-SKAALKLLVELCPWG 261 (407)
Q Consensus 186 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~-~~~A~~aL~~L~~~~ 261 (407)
.+|.+...|+ +...+.+..+-.++..|+....-.. .++..|++- +++. .... .+.++.+|..++...
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~---~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNW---TQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhcc---ccchhHHHHHHHHHHHHHcc
Confidence 6788888888 6788999999999999986654333 345555543 3333 3333 488999999888654
No 492
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=25.89 E-value=35 Score=27.22 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=7.5
Q ss_pred CCCCcccccc
Q 040073 45 NNTCPVTKQV 54 (407)
Q Consensus 45 ~~~cP~~~~~ 54 (407)
...||.|+..
T Consensus 86 ~~~CP~Cgs~ 95 (115)
T TIGR00100 86 LYRCPKCHGI 95 (115)
T ss_pred CccCcCCcCC
Confidence 4569999864
No 493
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.48 E-value=32 Score=36.94 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=26.0
Q ss_pred cccCccccc-cCcCceec-CCcccccHHHHHHHHhc
Q 040073 9 HFLCPISLQ-LMRDPVTV-STGITYDRVNIERWLFT 42 (407)
Q Consensus 9 ~~~Cpi~~~-~~~dPv~~-~~g~t~~r~~i~~~~~~ 42 (407)
.=+|-+|.. ++..|..+ +|||-|-|.||++.-..
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 347889984 45567654 89999999999997643
No 494
>PF09723 Zn-ribbon_8: Zinc ribbon domain; InterPro: IPR013429 This entry represents a region of about 41 amino acids found in a number of small proteins in a wide range of bacteria. The region usually begins with the initiator Met and contains two CxxC motifs separated by 17 amino acids. One protein in this entry has been noted as a putative regulatory protein, designated FmdB []. Most proteins in this entry have a C-terminal region containing highly degenerate sequence.
Probab=25.08 E-value=12 Score=23.83 Aligned_cols=25 Identities=12% Similarity=0.235 Sum_probs=15.3
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccc
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQ 53 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~ 53 (407)
.|||+|+... .. .+.....||.|+.
T Consensus 10 ~Cg~~fe~~~--~~-~~~~~~~CP~Cg~ 34 (42)
T PF09723_consen 10 ECGHEFEVLQ--SI-SEDDPVPCPECGS 34 (42)
T ss_pred CCCCEEEEEE--Ec-CCCCCCcCCCCCC
Confidence 5777886532 11 1123678999998
No 495
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=24.69 E-value=7.9e+02 Score=25.39 Aligned_cols=172 Identities=15% Similarity=0.070 Sum_probs=85.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC-CCHHHHHHHHHHHHHh----CCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ-FSQQASKAALKLLVEL----CPW 260 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~-~~~~~~~~A~~aL~~L----~~~ 260 (407)
++..+.+.+.++.....+.+......+....... ...+..+..+++++.. .++.+...|..++..| |..
T Consensus 358 a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~ 431 (574)
T smart00638 358 ALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVN 431 (574)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcC
Confidence 7778888888776544333333222222211221 2356667777764310 1445555555555544 443
Q ss_pred CchHHHHHhcCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-cC--CchhhHHH
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-RV--SHAASDRA 334 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-~~--s~~~~e~a 334 (407)
.+.....+-...++.|.+.|.... +.+-+...+.+|.|+.. ...++.+...+. +. +...+..|
T Consensus 432 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~-----------~~~i~~l~~~l~~~~~~~~~iR~~A 500 (574)
T smart00638 432 TPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH-----------PSSIKVLEPYLEGAEPLSTFIRLAA 500 (574)
T ss_pred CCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC-----------hhHHHHHHHhcCCCCCCCHHHHHHH
Confidence 333222233346778887776531 23333445555555533 123344444443 11 34677888
Q ss_pred HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-CCCHHHHHHHHHHHH
Q 040073 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-DASVKTKERAREILK 384 (407)
Q Consensus 335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~k~~A~~lL~ 384 (407)
+.+|..++...+.. +-+.|+.+... ...++.|-.|..+|-
T Consensus 501 v~Alr~~a~~~p~~----------v~~~l~~i~~n~~e~~EvRiaA~~~lm 541 (574)
T smart00638 501 ILALRNLAKRDPRK----------VQEVLLPIYLNRAEPPEVRMAAVLVLM 541 (574)
T ss_pred HHHHHHHHHhCchH----------HHHHHHHHHcCCCCChHHHHHHHHHHH
Confidence 88888777543331 22334444432 235666666655444
No 496
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=24.49 E-value=32 Score=19.32 Aligned_cols=10 Identities=20% Similarity=0.391 Sum_probs=6.4
Q ss_pred CCCCcccccc
Q 040073 45 NNTCPVTKQV 54 (407)
Q Consensus 45 ~~~cP~~~~~ 54 (407)
..+||.|+++
T Consensus 16 ~~fC~~CG~~ 25 (26)
T PF13248_consen 16 AKFCPNCGAK 25 (26)
T ss_pred cccChhhCCC
Confidence 4567777654
No 497
>KOG2593 consensus Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=24.35 E-value=86 Score=30.95 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=27.4
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCcccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVTKQVLQET 58 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~~~ 58 (407)
.=+..|.||+|.. +|.---+.+-+.. .+.+.|-.|+-.+-.+
T Consensus 124 t~~~~Y~Cp~C~k------------kyt~Lea~~L~~~~~~~F~C~~C~gelveD 166 (436)
T KOG2593|consen 124 TNVAGYVCPNCQK------------KYTSLEALQLLDNETGEFHCENCGGELVED 166 (436)
T ss_pred cccccccCCcccc------------chhhhHHHHhhcccCceEEEecCCCchhcc
Confidence 4567889999887 4444444444442 2578899998876543
No 498
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=24.19 E-value=75 Score=35.90 Aligned_cols=17 Identities=12% Similarity=0.141 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHhCC
Q 040073 243 SQQASKAALKLLVELCP 259 (407)
Q Consensus 243 ~~~~~~~A~~aL~~L~~ 259 (407)
+.++.-.-+.+|.|.+.
T Consensus 1091 DED~VMLLlD~llNFSr 1107 (1337)
T PRK14714 1091 DEDCVMLLLDGLLNFSK 1107 (1337)
T ss_pred hHHHHHHHHHHHHhccH
Confidence 56677777778888876
No 499
>PF15616 TerY-C: TerY-C metal binding domain
Probab=24.18 E-value=37 Score=27.76 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=26.3
Q ss_pred cCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 11 LCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
-||-|+..+-=. +-.||+.+|-. ..+..+||-|++..
T Consensus 79 gCP~CGn~~~fa-~C~CGkl~Ci~-------g~~~~~CPwCg~~g 115 (131)
T PF15616_consen 79 GCPHCGNQYAFA-VCGCGKLFCID-------GEGEVTCPWCGNEG 115 (131)
T ss_pred CCCCCcChhcEE-EecCCCEEEeC-------CCCCEECCCCCCee
Confidence 699999854333 33699999742 23478999999864
No 500
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=24.13 E-value=2.4e+02 Score=30.05 Aligned_cols=101 Identities=17% Similarity=0.095 Sum_probs=0.0
Q ss_pred cHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHH
Q 040073 66 NHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLA 145 (407)
Q Consensus 66 n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv 145 (407)
+..+..+++-+.+.+....++-+-.-+.|.+..-+..+-..+..+ ..|..++.-|..+....+..-..|.+...++.|+
T Consensus 38 ~~l~~~l~~y~~~t~s~~~~~il~~~~~P~~K~~~~~l~~~~~~~-~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LL 116 (668)
T PF04388_consen 38 PWLVNGLVDYYLSTNSQRALEILVGVQEPHDKHLFDKLNDYFVKP-SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLL 116 (668)
T ss_pred HHHHHHHHHHHhhcCcHHHHHHHHhcCCccHHHHHHHHHHHHcCc-hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHH
Q ss_pred HHhhccCCCCchHHHHHHHHHhc
Q 040073 146 TIITKSDAGSDECDEALSILYHL 168 (407)
Q Consensus 146 ~lL~~~~~~~~~~~~a~~~L~~L 168 (407)
++|..+.+ ..+...|+.+|..|
T Consensus 117 k~L~~D~~-~~~~~~al~~Liml 138 (668)
T PF04388_consen 117 KCLQFDTS-ITVVSSALLVLIML 138 (668)
T ss_pred HHHhhccc-HHHHHHHHHHHHHH
Done!