Query 040073
Match_columns 407
No_of_seqs 254 out of 2115
Neff 9.0
Searched_HMMs 29240
Date Mon Mar 25 07:15:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040073.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040073hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3nmw_A APC variant protein; AR 100.0 7.2E-33 2.5E-37 266.6 23.9 268 112-389 47-335 (354)
2 3nmz_A APC variant protein; pr 100.0 1.8E-31 6E-36 264.4 22.2 265 115-389 166-451 (458)
3 1xm9_A Plakophilin 1; armadill 100.0 3.3E-29 1.1E-33 250.3 23.7 283 99-389 3-361 (457)
4 3nmz_A APC variant protein; pr 100.0 1.5E-28 5.1E-33 243.5 25.8 286 96-388 68-408 (458)
5 3l6x_A Catenin delta-1; cateni 100.0 1.7E-28 5.9E-33 248.4 26.1 288 95-389 45-385 (584)
6 3ul1_B Importin subunit alpha- 100.0 6.9E-28 2.4E-32 244.1 25.7 282 95-388 97-387 (510)
7 3now_A UNC-45 protein, SD10334 100.0 3.3E-27 1.1E-31 246.5 29.2 282 96-388 419-737 (810)
8 1xm9_A Plakophilin 1; armadill 100.0 1.4E-27 4.7E-32 238.6 24.3 282 96-388 42-449 (457)
9 3tpo_A Importin subunit alpha- 100.0 6.9E-27 2.3E-31 237.9 28.0 281 96-388 117-406 (529)
10 3nmw_A APC variant protein; AR 100.0 5.5E-28 1.9E-32 232.5 17.3 244 96-348 71-339 (354)
11 3l6x_A Catenin delta-1; cateni 100.0 1.1E-26 3.6E-31 235.3 25.6 281 96-388 88-476 (584)
12 3tpo_A Importin subunit alpha- 100.0 1.6E-26 5.5E-31 235.2 26.1 285 96-389 160-450 (529)
13 3ul1_B Importin subunit alpha- 99.9 1.5E-26 5.3E-31 234.2 23.4 285 96-389 141-431 (510)
14 3now_A UNC-45 protein, SD10334 99.9 2.1E-26 7.1E-31 240.5 22.6 280 97-389 494-783 (810)
15 4b8j_A Importin subunit alpha- 99.9 2.9E-25 9.7E-30 225.7 28.3 284 97-388 73-358 (528)
16 4hxt_A De novo protein OR329; 99.9 2.9E-25 9.9E-30 202.8 24.0 241 98-347 2-245 (252)
17 4db8_A Armadillo-repeat protei 99.9 1.3E-25 4.6E-30 205.8 20.6 238 97-343 11-251 (252)
18 4b8j_A Importin subunit alpha- 99.9 1.7E-24 6E-29 219.9 30.7 280 97-389 116-401 (528)
19 4hxt_A De novo protein OR329; 99.9 7.1E-25 2.4E-29 200.2 24.5 241 139-391 2-244 (252)
20 1wa5_B Importin alpha subunit; 99.9 5.2E-24 1.8E-28 216.6 28.4 280 97-389 129-413 (530)
21 2jdq_A Importin alpha-1 subuni 99.9 1.4E-23 4.9E-28 208.0 30.2 279 98-388 64-347 (450)
22 4db8_A Armadillo-repeat protei 99.9 2.7E-24 9.4E-29 197.0 20.8 238 139-388 12-251 (252)
23 1wa5_B Importin alpha subunit; 99.9 1.1E-23 3.8E-28 214.1 27.2 281 97-388 86-370 (530)
24 1jdh_A Beta-catenin; beta-cate 99.9 3.5E-23 1.2E-27 209.7 26.6 283 97-388 58-385 (529)
25 2jdq_A Importin alpha-1 subuni 99.9 8.7E-23 3E-27 202.4 28.9 282 97-389 106-391 (450)
26 3tt9_A Plakophilin-2; cell adh 99.9 1.4E-24 4.7E-29 195.6 14.2 198 140-344 9-230 (233)
27 1jdh_A Beta-catenin; beta-cate 99.9 1.3E-22 4.4E-27 205.5 29.3 283 95-388 14-339 (529)
28 2z6h_A Catenin beta-1, beta-ca 99.9 1.1E-22 3.7E-27 211.7 28.3 283 95-388 11-336 (644)
29 2z6h_A Catenin beta-1, beta-ca 99.9 7.2E-23 2.5E-27 213.1 26.6 283 97-388 55-382 (644)
30 3tt9_A Plakophilin-2; cell adh 99.9 2.4E-23 8.1E-28 187.5 17.8 200 97-302 7-230 (233)
31 4db6_A Armadillo repeat protei 99.9 3.3E-22 1.1E-26 178.0 19.2 197 98-302 12-210 (210)
32 2z6g_A B-catenin; FULL-length, 99.9 1.7E-21 5.7E-26 206.7 27.1 283 97-388 191-518 (780)
33 2kr4_A Ubiquitin conjugation f 99.9 1.3E-23 4.3E-28 159.2 6.7 73 4-81 9-81 (85)
34 4db6_A Armadillo repeat protei 99.9 9.1E-22 3.1E-26 175.2 19.5 195 186-388 13-209 (210)
35 2kre_A Ubiquitin conjugation f 99.9 1.8E-23 6.3E-28 162.9 6.7 74 3-81 23-96 (100)
36 2z6g_A B-catenin; FULL-length, 99.9 1.8E-21 6E-26 206.5 23.4 277 97-388 149-428 (780)
37 1wgm_A Ubiquitin conjugation f 99.9 3.9E-23 1.3E-27 160.4 7.2 73 4-81 17-90 (98)
38 1xqr_A HSPBP1 protein; armadil 99.9 1.9E-20 6.5E-25 175.5 20.1 182 112-302 55-239 (296)
39 2f42_A STIP1 homology and U-bo 99.9 5E-22 1.7E-26 169.7 7.0 75 3-81 100-174 (179)
40 3opb_A SWI5-dependent HO expre 99.8 3.4E-20 1.2E-24 190.6 20.6 286 96-389 374-729 (778)
41 3opb_A SWI5-dependent HO expre 99.8 9.2E-20 3.1E-24 187.4 20.2 279 99-388 335-683 (778)
42 1xqr_A HSPBP1 protein; armadil 99.8 3.2E-19 1.1E-23 167.1 19.6 220 157-385 56-284 (296)
43 1t1h_A Gspef-atpub14, armadill 99.8 6.9E-21 2.4E-25 142.2 5.7 75 3-81 2-76 (78)
44 2yu4_A E3 SUMO-protein ligase 99.8 9.5E-21 3.3E-25 146.3 5.2 74 5-81 3-84 (94)
45 2c2l_A CHIP, carboxy terminus 99.8 8.3E-20 2.8E-24 170.4 6.2 75 3-81 202-276 (281)
46 3ztg_A E3 ubiquitin-protein li 99.7 2.9E-18 9.8E-23 132.2 7.1 77 3-81 7-84 (92)
47 2bay_A PRE-mRNA splicing facto 99.7 7.9E-18 2.7E-22 118.2 2.3 55 9-68 3-58 (61)
48 3grl_A General vesicular trans 99.7 1.1E-14 3.8E-19 146.2 24.8 283 97-388 20-342 (651)
49 3htk_C E3 SUMO-protein ligase 99.6 6.2E-17 2.1E-21 144.5 4.6 71 6-79 178-251 (267)
50 3m62_A Ubiquitin conjugation f 99.6 1.7E-16 5.9E-21 164.9 6.6 75 3-82 885-960 (968)
51 3fl2_A E3 ubiquitin-protein li 99.6 2.6E-16 9E-21 128.1 4.8 71 6-79 49-119 (124)
52 1z6u_A NP95-like ring finger p 99.6 9.1E-16 3.1E-20 128.7 4.8 70 6-78 75-144 (150)
53 2y43_A E3 ubiquitin-protein li 99.6 1.2E-15 4.1E-20 119.1 3.9 71 6-81 19-90 (99)
54 2yur_A Retinoblastoma-binding 99.6 3.7E-15 1.3E-19 109.6 5.6 62 3-66 9-71 (74)
55 3lrq_A E3 ubiquitin-protein li 99.5 9.1E-15 3.1E-19 114.1 4.7 72 6-81 19-91 (100)
56 2egp_A Tripartite motif-contai 99.5 5.2E-16 1.8E-20 115.9 -2.8 65 4-71 7-76 (79)
57 2csy_A Zinc finger protein 183 99.5 1E-14 3.5E-19 109.3 3.7 63 3-71 9-71 (81)
58 2ecw_A Tripartite motif-contai 99.5 4.3E-15 1.5E-19 112.4 1.2 65 4-71 14-82 (85)
59 1jm7_B BARD1, BRCA1-associated 99.5 7.6E-15 2.6E-19 118.1 2.2 69 6-81 19-88 (117)
60 2ckl_A Polycomb group ring fin 99.5 1.8E-14 6.3E-19 114.1 4.3 71 6-78 12-84 (108)
61 3hct_A TNF receptor-associated 99.5 1.7E-14 6E-19 116.1 4.2 72 5-80 14-85 (118)
62 2ecv_A Tripartite motif-contai 99.5 4.7E-15 1.6E-19 112.2 0.5 65 4-71 14-82 (85)
63 2djb_A Polycomb group ring fin 99.5 5.9E-14 2E-18 102.6 6.1 58 4-66 10-68 (72)
64 2ckl_B Ubiquitin ligase protei 99.5 2.3E-14 7.7E-19 122.6 4.2 71 6-79 51-122 (165)
65 3l11_A E3 ubiquitin-protein li 99.5 1.6E-14 5.4E-19 115.9 2.5 71 5-78 11-87 (115)
66 4ayc_A E3 ubiquitin-protein li 99.5 3E-14 1E-18 118.1 4.2 64 7-77 51-114 (138)
67 3grl_A General vesicular trans 99.4 9.9E-12 3.4E-16 125.0 22.7 285 97-387 59-393 (651)
68 2ecy_A TNF receptor-associated 99.4 6.9E-14 2.4E-18 100.3 4.8 53 5-58 11-63 (66)
69 1jm7_A BRCA1, breast cancer ty 99.4 2.7E-14 9.4E-19 114.0 2.5 69 7-78 19-88 (112)
70 3knv_A TNF receptor-associated 99.4 1.3E-13 4.3E-18 114.3 3.9 71 5-76 27-103 (141)
71 2ysj_A Tripartite motif-contai 99.4 2.8E-13 9.7E-18 96.1 5.1 47 5-51 16-63 (63)
72 2ysl_A Tripartite motif-contai 99.4 2.6E-13 8.8E-18 99.4 5.0 53 5-57 16-69 (73)
73 1rmd_A RAG1; V(D)J recombinati 99.4 2.2E-13 7.4E-18 109.4 3.6 68 6-77 20-88 (116)
74 3hcs_A TNF receptor-associated 99.4 2.9E-13 1E-17 116.3 4.2 69 5-77 14-82 (170)
75 2ct2_A Tripartite motif protei 99.3 7.9E-13 2.7E-17 100.5 5.1 64 4-67 10-78 (88)
76 1g25_A CDK-activating kinase a 99.3 5.2E-13 1.8E-17 95.4 3.6 55 8-66 2-61 (65)
77 2ecj_A Tripartite motif-contai 99.3 1.6E-12 5.6E-17 90.5 5.0 47 5-51 11-58 (58)
78 3ng2_A RNF4, snurf, ring finge 99.3 6.8E-13 2.3E-17 96.6 3.1 58 4-66 5-69 (71)
79 2d8t_A Dactylidin, ring finger 99.3 1E-12 3.4E-17 95.7 3.5 51 5-57 11-61 (71)
80 2ea6_A Ring finger protein 4; 99.2 4.2E-12 1.4E-16 91.7 3.4 51 4-56 10-67 (69)
81 3ltm_A Alpha-REP4; protein eng 99.2 9E-10 3.1E-14 97.4 19.3 188 138-390 18-205 (211)
82 3ltm_A Alpha-REP4; protein eng 99.2 1.2E-09 4.1E-14 96.6 19.3 189 96-346 17-206 (211)
83 3ltj_A Alpharep-4; protein eng 99.2 1.8E-09 6.1E-14 94.7 20.2 188 93-342 9-197 (201)
84 1oyz_A Hypothetical protein YI 99.2 1.9E-09 6.4E-14 99.7 21.3 224 99-387 24-249 (280)
85 2xeu_A Ring finger protein 4; 99.2 3E-12 1E-16 91.0 1.6 49 8-58 2-57 (64)
86 1e4u_A Transcriptional repress 99.2 1.7E-11 6E-16 90.3 5.7 54 4-58 6-63 (78)
87 2ect_A Ring finger protein 126 99.2 1.6E-11 5.4E-16 91.0 4.3 58 4-66 10-70 (78)
88 3ltj_A Alpharep-4; protein eng 99.1 4.6E-09 1.6E-13 92.0 18.8 185 139-388 14-198 (201)
89 1chc_A Equine herpes virus-1 r 99.1 4.4E-11 1.5E-15 86.1 3.8 49 7-57 3-52 (68)
90 2ecn_A Ring finger protein 141 99.1 3E-11 1E-15 87.5 2.9 50 5-57 11-60 (70)
91 1bor_A Transcription factor PM 99.1 1.6E-11 5.6E-16 84.6 0.7 46 7-57 4-49 (56)
92 1oyz_A Hypothetical protein YI 99.1 9.3E-09 3.2E-13 94.9 19.5 224 97-384 53-278 (280)
93 2ecm_A Ring finger and CHY zin 99.1 7.8E-11 2.7E-15 80.9 3.4 47 8-56 4-54 (55)
94 4ap4_A E3 ubiquitin ligase RNF 99.1 4E-11 1.4E-15 98.3 2.2 51 6-58 4-61 (133)
95 2kiz_A E3 ubiquitin-protein li 99.0 1.4E-10 4.7E-15 83.7 4.7 52 4-57 9-63 (69)
96 2ep4_A Ring finger protein 24; 99.0 1.6E-10 5.4E-15 84.6 4.6 52 4-57 10-64 (74)
97 1iym_A EL5; ring-H2 finger, ub 99.0 1E-10 3.5E-15 80.3 3.3 48 6-55 2-53 (55)
98 2l0b_A E3 ubiquitin-protein li 99.0 1.2E-10 4.1E-15 88.9 3.6 50 6-57 37-89 (91)
99 4fdd_A Transportin-1; heat rep 99.0 9.8E-09 3.4E-13 109.8 17.3 276 97-389 127-430 (852)
100 1x4j_A Ring finger protein 38; 99.0 2E-10 6.8E-15 84.3 2.7 49 7-57 21-72 (75)
101 1v87_A Deltex protein 2; ring- 99.0 3.4E-10 1.2E-14 90.3 4.1 53 5-57 21-94 (114)
102 4gmo_A Putative uncharacterize 98.9 5.1E-09 1.7E-13 109.2 13.1 193 186-387 35-257 (684)
103 4ic3_A E3 ubiquitin-protein li 98.9 2.2E-10 7.6E-15 83.7 1.2 45 7-57 22-67 (74)
104 4gmo_A Putative uncharacterize 98.9 1.2E-08 4.1E-13 106.4 12.8 198 97-300 33-257 (684)
105 4fdd_A Transportin-1; heat rep 98.9 5.1E-08 1.7E-12 104.3 17.8 271 100-388 217-512 (852)
106 1wim_A KIAA0161 protein; ring 98.8 5.2E-10 1.8E-14 85.9 0.9 69 7-79 3-84 (94)
107 1ibr_B P95, importin beta-1 su 98.8 4.7E-08 1.6E-12 96.2 15.1 280 97-391 127-440 (462)
108 1b3u_A Protein (protein phosph 98.8 2E-07 6.7E-12 94.7 20.1 255 108-388 174-431 (588)
109 2y1n_A E3 ubiquitin-protein li 98.8 1.9E-09 6.5E-14 102.5 4.1 48 9-57 332-379 (389)
110 4ap4_A E3 ubiquitin ligase RNF 98.8 8.5E-10 2.9E-14 90.3 1.4 55 7-66 70-131 (133)
111 2ecg_A Baculoviral IAP repeat- 98.8 1.8E-09 6.2E-14 79.1 2.4 45 7-57 23-68 (75)
112 2vje_A E3 ubiquitin-protein li 98.7 4.9E-09 1.7E-13 74.1 3.4 51 5-57 4-57 (64)
113 2ecl_A Ring-box protein 2; RNF 98.7 5.7E-09 2E-13 77.6 3.1 48 8-57 14-76 (81)
114 1b3u_A Protein (protein phosph 98.7 2.6E-06 8.9E-11 86.4 23.9 266 98-390 10-312 (588)
115 2vgl_B AP-2 complex subunit be 98.7 6.7E-07 2.3E-11 91.6 18.3 264 101-390 89-384 (591)
116 2vje_B MDM4 protein; proto-onc 98.7 9.8E-09 3.4E-13 72.3 3.0 48 8-57 6-56 (63)
117 3dpl_R Ring-box protein 1; ubi 98.6 4E-08 1.4E-12 76.7 4.1 45 9-55 37-99 (106)
118 2vgl_B AP-2 complex subunit be 98.6 1.2E-06 4E-11 89.8 16.2 261 98-389 49-312 (591)
119 2yho_A E3 ubiquitin-protein li 98.5 1.2E-08 4.2E-13 75.3 0.8 45 7-57 16-61 (79)
120 1qgr_A Protein (importin beta 98.5 1.6E-05 5.5E-10 84.6 23.1 275 98-390 128-439 (876)
121 3b2a_A TON_1937, putative unch 98.4 2.5E-05 8.5E-10 68.5 18.0 226 140-389 34-262 (265)
122 1u6g_C TIP120 protein, CAND1; 98.4 1.6E-06 5.6E-11 96.2 13.3 273 97-390 5-286 (1230)
123 2d8s_A Cellular modulator of i 98.4 2.7E-07 9.1E-12 68.0 4.7 52 6-57 12-70 (80)
124 2ea5_A Cell growth regulator w 98.4 3E-07 1E-11 65.6 4.4 46 6-57 12-58 (68)
125 1w63_A Adapter-related protein 98.4 2.7E-05 9.3E-10 80.1 20.7 254 100-390 144-416 (618)
126 2bpt_A Importin beta-1 subunit 98.4 9.8E-06 3.4E-10 86.1 18.0 268 105-389 376-669 (861)
127 2qk2_A LP04448P; mini spindles 98.3 7.8E-06 2.7E-10 73.6 14.1 188 188-391 18-208 (242)
128 1ibr_B P95, importin beta-1 su 98.3 1.2E-05 4E-10 78.9 14.7 267 102-388 94-395 (462)
129 1w63_A Adapter-related protein 98.3 0.00028 9.7E-09 72.5 25.6 257 99-388 71-379 (618)
130 2bpt_A Importin beta-1 subunit 98.2 4.3E-05 1.5E-09 81.1 19.7 266 106-389 232-530 (861)
131 1qgr_A Protein (importin beta 98.2 3.9E-05 1.3E-09 81.7 18.9 276 101-390 175-481 (876)
132 4a0k_B E3 ubiquitin-protein li 98.2 1.5E-07 5.1E-12 74.4 0.0 44 10-55 49-110 (117)
133 2qk2_A LP04448P; mini spindles 98.2 1.2E-05 4E-10 72.4 11.8 180 102-301 19-205 (242)
134 3dad_A FH1/FH2 domain-containi 98.1 0.00013 4.3E-09 67.8 16.8 158 98-259 118-286 (339)
135 1te4_A Conserved protein MTH18 98.1 1.2E-06 4.2E-11 71.1 2.9 120 138-298 11-130 (131)
136 3b2a_A TON_1937, putative unch 98.1 7.9E-05 2.7E-09 65.3 13.8 209 67-303 10-220 (265)
137 1u6g_C TIP120 protein, CAND1; 98.0 6.5E-05 2.2E-09 83.4 16.3 231 98-347 48-288 (1230)
138 2qk1_A Protein STU2; STU2P, XM 98.0 0.00013 4.4E-09 66.0 15.1 195 190-391 21-223 (249)
139 2qk1_A Protein STU2; STU2P, XM 98.0 2.9E-05 9.9E-10 70.3 10.1 190 103-301 21-220 (249)
140 1te4_A Conserved protein MTH18 98.0 1.4E-06 4.9E-11 70.7 0.7 118 186-340 13-130 (131)
141 3dad_A FH1/FH2 domain-containi 97.8 0.0014 4.9E-08 60.8 17.9 186 187-377 120-325 (339)
142 2db0_A 253AA long hypothetical 97.8 0.0097 3.3E-07 50.2 21.0 216 96-343 30-246 (253)
143 2vgl_A Adaptor protein complex 97.8 0.0017 5.8E-08 66.7 20.3 247 112-390 163-435 (621)
144 2vgl_A Adaptor protein complex 97.7 0.0087 3E-07 61.4 23.7 258 100-387 113-397 (621)
145 2ct0_A Non-SMC element 1 homol 97.6 5.4E-05 1.9E-09 54.4 4.3 48 10-57 16-64 (74)
146 2iw3_A Elongation factor 3A; a 97.5 0.01 3.4E-07 63.4 21.7 251 115-392 70-328 (986)
147 1vyx_A ORF K3, K3RING; zinc-bi 97.4 9E-05 3.1E-09 51.1 3.3 49 8-56 5-58 (60)
148 3vk6_A E3 ubiquitin-protein li 97.4 0.00012 4E-09 54.9 3.4 46 11-57 3-49 (101)
149 2iw3_A Elongation factor 3A; a 97.1 0.0084 2.9E-07 64.0 16.0 261 100-390 16-282 (986)
150 4ady_A RPN2, 26S proteasome re 97.1 0.037 1.3E-06 58.6 20.0 167 186-388 508-676 (963)
151 1ho8_A Vacuolar ATP synthase s 97.0 0.066 2.3E-06 52.2 20.0 223 158-388 185-476 (480)
152 4ady_A RPN2, 26S proteasome re 97.0 0.16 5.3E-06 53.9 23.8 207 141-386 509-717 (963)
153 1ho8_A Vacuolar ATP synthase s 97.0 0.16 5.4E-06 49.5 22.1 251 137-398 75-360 (480)
154 3oc3_A Helicase MOT1, MOT1; re 96.8 0.02 6.9E-07 56.5 14.1 246 99-384 175-432 (800)
155 3k1l_B Fancl; UBC, ring, RWD, 96.8 0.00023 7.7E-09 65.9 0.3 48 10-57 309-373 (381)
156 2db0_A 253AA long hypothetical 96.8 0.17 5.9E-06 42.7 17.5 213 140-388 33-246 (253)
157 2jun_A Midline-1; B-BOX, TRIM, 96.8 0.00066 2.3E-08 52.1 2.8 34 8-41 2-38 (101)
158 3i2d_A E3 SUMO-protein ligase 96.3 0.0025 8.4E-08 59.9 4.0 63 9-74 249-314 (371)
159 3tjz_B Coatomer subunit gamma; 96.3 0.16 5.4E-06 47.9 16.3 241 64-347 79-320 (355)
160 3tjz_B Coatomer subunit gamma; 96.1 0.29 9.8E-06 46.2 17.3 137 142-303 71-207 (355)
161 2fv2_A RCD1 required for cell 96.0 0.11 3.6E-06 46.2 12.8 151 114-269 73-234 (268)
162 4ffb_C Protein STU2; tubulin f 95.9 0.082 2.8E-06 48.0 12.1 191 187-390 12-214 (278)
163 4ffb_C Protein STU2; tubulin f 95.8 0.41 1.4E-05 43.3 16.5 185 103-301 14-212 (278)
164 4fo9_A E3 SUMO-protein ligase 95.8 0.0068 2.3E-07 56.7 4.4 64 9-75 215-281 (360)
165 2of3_A ZYG-9; multifunctional 95.8 0.14 4.8E-06 46.2 12.8 179 103-301 51-236 (266)
166 3ebb_A Phospholipase A2-activa 95.4 0.8 2.8E-05 42.1 16.7 169 97-269 102-273 (304)
167 2fv2_A RCD1 required for cell 95.3 0.86 2.9E-05 40.5 15.8 207 98-311 3-234 (268)
168 3nw0_A Non-structural maintena 94.7 0.025 8.5E-07 50.3 4.3 47 10-56 181-228 (238)
169 1wa5_C Importin alpha RE-expor 94.7 0.91 3.1E-05 48.7 17.3 261 113-390 377-672 (960)
170 3ebb_A Phospholipase A2-activa 94.5 0.8 2.7E-05 42.1 14.1 202 112-326 79-287 (304)
171 3eg5_B Protein diaphanous homo 93.4 5.4 0.00019 37.8 18.4 190 102-298 70-290 (383)
172 2f31_A Diaphanous protein homo 93.1 4.3 0.00015 35.6 16.8 161 117-283 21-210 (233)
173 2x1g_F Cadmus; transport prote 93.0 11 0.00038 40.1 23.4 174 197-388 476-663 (971)
174 2of3_A ZYG-9; multifunctional 92.9 1.3 4.6E-05 39.7 12.2 139 195-348 97-241 (266)
175 2f31_A Diaphanous protein homo 92.1 0.87 3E-05 40.1 9.9 77 270-346 42-128 (233)
176 4hat_C Exportin-1; heat repeat 91.7 1.4 4.7E-05 47.8 12.6 151 197-355 465-630 (1023)
177 3eg5_B Protein diaphanous homo 91.6 0.95 3.3E-05 43.1 10.2 115 270-384 108-242 (383)
178 1wa5_C Importin alpha RE-expor 90.9 19 0.00065 38.4 21.5 178 156-342 473-669 (960)
179 1weo_A Cellulose synthase, cat 90.5 0.35 1.2E-05 35.1 4.4 47 10-57 17-70 (93)
180 3c2g_A SYS-1 protein; beta-cat 90.5 4.6 0.00016 37.6 12.9 117 160-283 262-379 (619)
181 2x19_B Importin-13; nuclear tr 90.5 7.9 0.00027 41.2 17.3 175 195-388 459-646 (963)
182 1x5b_A Signal transducing adap 90.3 1.1 3.7E-05 37.1 8.1 79 315-394 53-131 (163)
183 1upk_A MO25 protein; transfera 89.6 13 0.00043 34.4 15.6 192 102-303 82-285 (341)
184 3u0r_A Apoptosis inhibitor 5; 89.0 18 0.00061 35.2 17.3 133 97-256 28-160 (507)
185 2x1g_F Cadmus; transport prote 88.7 27 0.00093 37.1 22.4 215 157-391 480-725 (971)
186 2bnx_A Diaphanous protein homo 88.4 17 0.00059 34.4 17.8 179 103-287 9-218 (386)
187 3c2g_A SYS-1 protein; beta-cat 88.3 4.2 0.00014 37.9 10.9 187 209-400 266-481 (619)
188 2bay_A PRE-mRNA splicing facto 88.2 0.12 4.1E-06 35.2 0.6 38 45-84 3-42 (61)
189 3zyq_A Hepatocyte growth facto 87.5 1.2 4.1E-05 39.0 6.8 79 315-394 46-124 (226)
190 3u0r_A Apoptosis inhibitor 5; 86.8 5.7 0.00019 38.6 11.4 74 196-283 39-112 (507)
191 1dvp_A HRS, hepatocyte growth 86.2 1.7 5.7E-05 37.9 7.0 78 316-394 44-121 (220)
192 3oc3_A Helicase MOT1, MOT1; re 86.2 1.3 4.4E-05 44.1 6.6 153 199-384 242-400 (800)
193 3g2s_A C-terminal fragment of 85.5 2.3 8E-05 34.5 7.0 78 315-393 49-131 (149)
194 2bnx_A Diaphanous protein homo 85.2 5.4 0.00019 37.9 10.6 109 271-379 47-175 (386)
195 3ldz_A STAM-1, signal transduc 85.0 2.8 9.7E-05 33.6 7.3 78 315-394 43-120 (140)
196 1mhq_A ADP-ribosylation factor 83.8 2.1 7.2E-05 34.8 6.1 79 315-394 39-122 (148)
197 1juq_A ADP-ribosylation factor 83.7 2.3 7.7E-05 35.5 6.3 76 315-391 51-131 (171)
198 3mjh_B Early endosome antigen 83.3 0.26 8.8E-06 29.1 0.2 15 9-23 5-19 (34)
199 4hat_C Exportin-1; heat repeat 82.0 6 0.0002 42.7 10.4 144 157-311 469-631 (1023)
200 2x19_B Importin-13; nuclear tr 81.7 29 0.00099 36.8 15.8 155 112-281 464-622 (963)
201 1elk_A Target of MYB1; superhe 80.9 5.1 0.00017 32.8 7.4 79 315-394 54-136 (157)
202 1lsh_A Lipovitellin (LV-1N, LV 80.6 68 0.0023 34.7 19.7 103 186-302 392-508 (1056)
203 2jvx_A NF-kappa-B essential mo 78.1 0.61 2.1E-05 26.2 0.6 16 7-22 1-16 (28)
204 3m1i_C Exportin-1; heat repeat 74.9 27 0.00092 37.6 13.0 147 197-347 465-622 (1049)
205 6rxn_A Rubredoxin; electron tr 73.7 1 3.5E-05 28.6 0.9 13 5-17 26-38 (46)
206 1upk_A MO25 protein; transfera 72.2 61 0.0021 29.9 18.2 196 186-388 79-283 (341)
207 2kkx_A Uncharacterized protein 71.2 4.6 0.00016 29.9 4.0 53 3-57 20-79 (102)
208 1wgm_A Ubiquitin conjugation f 70.3 2.1 7.1E-05 32.0 2.1 39 45-85 22-62 (98)
209 2kr4_A Ubiquitin conjugation f 69.9 1.7 5.9E-05 31.5 1.5 37 45-83 14-51 (85)
210 4rxn_A Rubredoxin; electron tr 69.8 1.4 4.8E-05 29.0 0.9 13 5-17 32-44 (54)
211 1e8j_A Rubredoxin; iron-sulfur 69.4 1.6 5.6E-05 28.5 1.1 13 5-17 32-44 (52)
212 2kre_A Ubiquitin conjugation f 69.0 1.7 5.8E-05 32.7 1.3 40 45-86 29-69 (100)
213 3ldz_A STAM-1, signal transduc 67.4 22 0.00076 28.2 7.8 70 186-259 43-114 (140)
214 1x5b_A Signal transducing adap 67.0 23 0.00078 29.0 8.0 71 186-259 53-125 (163)
215 3m1i_C Exportin-1; heat repeat 66.9 1.4E+02 0.0048 32.0 23.5 223 94-344 12-264 (1049)
216 3ibv_A Exportin-T; karyopherin 66.3 1.4E+02 0.0049 31.8 21.0 236 94-355 2-272 (980)
217 3ibv_A Exportin-T; karyopherin 66.2 1.4E+02 0.0049 31.8 20.5 215 66-311 21-273 (980)
218 1yk4_A Rubredoxin, RD; electro 65.3 2 6.7E-05 28.1 0.9 13 5-17 31-43 (52)
219 1lrv_A LRV, leucine-rich repea 64.7 1.9 6.4E-05 38.3 0.9 36 346-383 206-241 (244)
220 2jne_A Hypothetical protein YF 64.3 0.23 8E-06 36.7 -4.1 41 10-57 33-73 (101)
221 2v3b_B Rubredoxin 2, rubredoxi 64.0 2.1 7.1E-05 28.3 0.8 13 5-17 32-44 (55)
222 2cs3_A Protein C14ORF4, MY039 63.9 5.9 0.0002 28.1 3.1 43 9-51 15-64 (93)
223 2kn9_A Rubredoxin; metalloprot 63.5 2.4 8.2E-05 30.4 1.1 13 5-17 56-68 (81)
224 2ko5_A Ring finger protein Z; 63.3 3.5 0.00012 30.3 1.9 45 10-57 29-73 (99)
225 2o35_A Hypothetical protein DU 60.9 3.3 0.00011 30.6 1.5 12 31-42 43-54 (105)
226 1dx8_A Rubredoxin; electron tr 60.6 2.6 9E-05 29.4 0.9 13 5-17 36-48 (70)
227 3fyb_A Protein of unknown func 59.8 3.6 0.00012 30.4 1.5 12 31-42 42-53 (104)
228 1mhq_A ADP-ribosylation factor 59.2 39 0.0013 27.1 7.9 73 186-259 39-116 (148)
229 1vdy_A Hypothetical protein (R 59.1 26 0.00089 27.9 6.6 74 316-390 51-132 (140)
230 3a6p_A Exportin-5; exportin-5, 58.7 2.1E+02 0.0072 31.3 18.8 221 100-346 13-279 (1204)
231 3l9t_A Putative uncharacterize 58.0 75 0.0026 27.7 9.9 137 186-347 72-211 (240)
232 3g2s_A C-terminal fragment of 55.2 56 0.0019 26.2 8.1 73 186-259 49-126 (149)
233 3l9t_A Putative uncharacterize 54.0 1.1E+02 0.0038 26.6 11.2 140 97-262 69-210 (240)
234 3zyq_A Hepatocyte growth facto 53.6 17 0.00058 31.6 5.1 72 227-301 45-118 (226)
235 2xqn_T Testin, TESS; metal-bin 52.6 8 0.00028 29.9 2.6 47 7-57 28-75 (126)
236 2f42_A STIP1 homology and U-bo 51.6 4.5 0.00015 33.9 1.0 35 45-81 106-141 (179)
237 1juq_A ADP-ribosylation factor 50.5 50 0.0017 27.1 7.3 73 186-259 51-128 (171)
238 3rru_A TOM1L1 protein; structu 49.5 15 0.00053 29.7 3.9 79 315-394 54-136 (152)
239 3vhs_A ATPase wrnip1; zinc fin 49.2 4.2 0.00014 21.8 0.3 11 10-20 7-17 (29)
240 3vld_A DNA mismatch repair pro 47.5 1.3E+02 0.0044 29.2 10.5 107 187-301 118-225 (500)
241 1dvp_A HRS, hepatocyte growth 47.1 51 0.0018 28.2 7.2 71 186-259 43-115 (220)
242 1lsh_A Lipovitellin (LV-1N, LV 46.0 3.1E+02 0.011 29.5 16.0 123 106-261 448-578 (1056)
243 3qml_C Protein SLS1, nucleotid 46.0 1.7E+02 0.0059 26.5 11.9 148 187-343 24-189 (315)
244 1m3v_A FLIN4, fusion of the LI 43.8 16 0.00055 28.1 3.1 48 8-57 31-81 (122)
245 2eps_A POZ-, at HOOK-, and zin 43.5 24 0.00083 22.1 3.5 39 7-56 10-52 (54)
246 3uk3_C Zinc finger protein 217 43.1 11 0.00039 23.7 1.8 38 9-57 4-44 (57)
247 1elk_A Target of MYB1; superhe 42.7 99 0.0034 24.9 7.9 73 186-259 54-130 (157)
248 2xjy_A Rhombotin-2; oncoprotei 42.5 16 0.00054 28.4 2.9 49 7-57 27-78 (131)
249 2jrp_A Putative cytoplasmic pr 40.2 1.5 5E-05 31.5 -3.2 40 10-56 3-42 (81)
250 3gjx_A Exportin-1; transport, 37.1 4.3E+02 0.015 28.5 15.8 186 186-388 61-275 (1073)
251 1lrv_A LRV, leucine-rich repea 37.1 16 0.00053 32.2 2.2 37 346-383 182-218 (244)
252 3qml_C Protein SLS1, nucleotid 36.8 2.4E+02 0.0083 25.5 12.0 138 157-300 44-188 (315)
253 2ee8_A Protein ODD-skipped-rel 36.5 75 0.0026 22.7 5.9 50 7-56 15-84 (106)
254 1yc5_A NAD-dependent deacetyla 35.5 36 0.0012 29.9 4.3 53 26-79 126-180 (246)
255 2ct7_A Ring finger protein 31; 34.9 4.1 0.00014 29.6 -1.7 30 10-39 26-61 (86)
256 3gae_A Protein DOA1; UFD3, CDC 34.3 1.1E+02 0.0039 26.7 7.5 143 142-301 59-217 (253)
257 1rut_X Flinc4, fusion protein 34.1 11 0.00037 31.6 0.7 49 7-57 30-81 (188)
258 1iml_A CRIP, cysteine rich int 33.1 29 0.001 23.8 2.8 45 7-55 25-71 (76)
259 2ctu_A Zinc finger protein 483 33.0 19 0.00063 23.9 1.7 35 8-57 17-51 (73)
260 4gzn_C ZFP-57, zinc finger pro 32.5 17 0.00057 24.1 1.3 37 10-57 5-44 (60)
261 3gjx_A Exportin-1; transport, 32.3 1.3E+02 0.0046 32.4 8.9 94 157-259 495-595 (1073)
262 2adr_A ADR1; transcription reg 32.3 27 0.00092 22.2 2.3 38 9-57 2-42 (60)
263 2lv2_A Insulinoma-associated p 32.1 22 0.00075 25.4 2.0 38 9-57 28-68 (85)
264 2wbs_A Krueppel-like factor 4; 32.0 40 0.0014 23.2 3.5 15 7-21 3-19 (89)
265 3gs3_A Symplekin, LD45768P; he 31.7 1.4E+02 0.0049 26.2 7.6 63 186-256 54-116 (257)
266 1bbo_A Human enhancer-binding 31.0 15 0.00051 23.1 0.8 37 10-57 2-41 (57)
267 2epr_A POZ-, at HOOK-, and zin 31.0 35 0.0012 20.5 2.6 35 8-53 11-48 (48)
268 2cup_A Skeletal muscle LIM-pro 30.4 19 0.00065 26.4 1.5 46 7-56 31-77 (101)
269 2rgt_A Fusion of LIM/homeobox 30.3 52 0.0018 26.7 4.3 47 7-57 31-77 (169)
270 3gae_A Protein DOA1; UFD3, CDC 30.3 1.9E+02 0.0066 25.2 8.3 129 202-344 71-218 (253)
271 3pst_A Protein DOA1; protein d 30.2 3.6E+02 0.012 25.6 11.1 142 144-301 233-389 (425)
272 2d8x_A Protein pinch; LIM doma 30.0 40 0.0014 22.6 3.0 30 10-39 32-62 (70)
273 1vd4_A Transcription initiatio 29.7 11 0.00038 24.7 0.0 13 45-57 39-51 (62)
274 2c2l_A CHIP, carboxy terminus 29.6 14 0.00049 32.7 0.7 35 45-81 208-243 (281)
275 1j8f_A SIRT2, sirtuin 2, isofo 29.3 27 0.00091 32.1 2.5 31 27-57 167-197 (323)
276 2ytn_A Zinc finger protein 347 28.8 62 0.0021 18.9 3.5 13 9-21 12-24 (46)
277 3o2t_A Symplekin; heat repeat, 28.7 3.7E+02 0.013 25.2 10.8 13 357-369 224-236 (386)
278 1ma3_A SIR2-AF2, transcription 28.4 44 0.0015 29.4 3.7 53 26-79 128-183 (253)
279 2d8z_A Four and A half LIM dom 28.3 48 0.0016 22.1 3.2 31 9-39 31-62 (70)
280 2jtn_A LIM domain-binding prot 28.2 39 0.0013 27.9 3.2 47 7-57 85-131 (182)
281 1wig_A KIAA1808 protein; LIM d 28.1 27 0.00093 23.9 1.8 31 8-38 30-62 (73)
282 2fiy_A Protein FDHE homolog; F 28.0 5.4 0.00019 36.6 -2.4 45 8-54 181-231 (309)
283 1x5w_A Zinc finger protein 64, 27.6 31 0.001 22.8 2.0 39 8-57 8-49 (70)
284 2dar_A PDZ and LIM domain prot 27.1 50 0.0017 23.5 3.3 23 11-33 27-49 (90)
285 3gs3_A Symplekin, LD45768P; he 27.0 3.2E+02 0.011 23.9 9.5 87 200-298 30-116 (257)
286 2lce_A B-cell lymphoma 6 prote 26.9 23 0.00078 23.8 1.2 39 8-57 16-57 (74)
287 2epq_A POZ-, at HOOK-, and zin 26.8 23 0.00079 21.0 1.1 33 9-52 10-45 (45)
288 3l3f_X Protein DOA1, DOA1/UFD3 26.6 2E+02 0.007 26.7 8.0 141 145-301 171-326 (362)
289 2eop_A Zinc finger protein 268 26.3 71 0.0024 18.6 3.5 13 9-21 12-24 (46)
290 2jmo_A Parkin; IBR, E3 ligase, 25.7 7.8 0.00027 27.6 -1.5 31 9-39 25-68 (80)
291 1nyp_A Pinch protein; LIM doma 25.6 43 0.0015 22.1 2.5 21 11-31 7-27 (66)
292 2ctd_A Zinc finger protein 512 25.5 39 0.0013 24.4 2.4 37 10-57 35-74 (96)
293 3l3f_X Protein DOA1, DOA1/UFD3 25.3 1.8E+02 0.0062 27.0 7.4 95 157-259 215-326 (362)
294 1x6a_A LIMK-2, LIM domain kina 25.2 64 0.0022 22.3 3.5 21 11-31 17-37 (81)
295 2cur_A Skeletal muscle LIM-pro 24.8 68 0.0023 21.3 3.4 32 9-40 31-63 (69)
296 2eml_A Zinc finger protein 28 24.8 67 0.0023 18.7 3.1 13 9-21 12-24 (46)
297 1x6e_A Zinc finger protein 24; 24.7 20 0.00067 24.0 0.6 39 8-57 13-54 (72)
298 2gmg_A Hypothetical protein PF 24.6 23 0.00077 26.6 0.9 29 19-54 65-93 (105)
299 1ard_A Yeast transcription fac 24.4 28 0.00097 17.7 1.1 11 10-20 3-13 (29)
300 2kdx_A HYPA, hydrogenase/ureas 24.0 28 0.00097 26.7 1.4 10 45-54 89-99 (119)
301 1klr_A Zinc finger Y-chromosom 23.6 32 0.0011 17.5 1.3 12 10-21 3-14 (30)
302 2m0e_A Zinc finger and BTB dom 23.5 32 0.0011 17.3 1.2 11 10-20 3-13 (29)
303 1znf_A 31ST zinc finger from X 23.3 27 0.00094 17.4 0.9 12 10-21 2-13 (27)
304 1l8d_A DNA double-strand break 22.8 19 0.00066 27.2 0.2 13 45-57 47-59 (112)
305 2eq4_A Zinc finger protein 224 22.5 93 0.0032 18.0 3.5 12 10-21 13-24 (46)
306 1x61_A Thyroid receptor intera 22.2 88 0.003 20.9 3.6 31 10-40 34-65 (72)
307 2el6_A Zinc finger protein 268 22.1 68 0.0023 18.8 2.7 13 9-21 12-24 (46)
308 2el4_A Zinc finger protein 268 21.8 75 0.0026 18.5 2.9 13 9-21 12-24 (46)
309 2l4z_A DNA endonuclease RBBP8, 21.8 63 0.0022 24.8 3.0 37 10-56 62-99 (123)
310 1rik_A E6APC1 peptide; E6-bind 21.7 28 0.00096 17.7 0.7 12 10-21 3-14 (29)
311 1p7a_A BF3, BKLF, kruppel-like 21.4 30 0.001 19.2 0.8 13 9-21 11-23 (37)
312 1s24_A Rubredoxin 2; electron 21.4 24 0.00082 25.6 0.4 40 8-55 34-78 (87)
313 2wbt_A B-129; zinc finger; 2.7 21.3 65 0.0022 24.2 3.1 12 45-56 100-111 (129)
314 2gqj_A Zinc finger protein KIA 21.3 32 0.0011 24.8 1.2 42 8-57 23-66 (98)
315 3o2t_A Symplekin; heat repeat, 21.2 2.4E+02 0.0083 26.4 7.5 59 186-252 64-122 (386)
316 1paa_A Yeast transcription fac 21.2 38 0.0013 17.3 1.2 12 10-21 3-14 (30)
317 2cot_A Zinc finger protein 435 21.0 64 0.0022 21.6 2.7 39 8-57 17-58 (77)
318 4ayb_P DNA-directed RNA polyme 20.7 47 0.0016 20.9 1.6 14 3-16 17-30 (48)
319 2m0f_A Zinc finger and BTB dom 20.4 25 0.00085 17.9 0.3 11 10-20 3-13 (29)
320 2dmd_A Zinc finger protein 64, 20.3 59 0.002 22.8 2.5 15 8-22 7-21 (96)
321 2d9h_A Zinc finger protein 692 20.1 39 0.0013 22.8 1.4 43 8-57 6-50 (78)
322 1wyh_A SLIM 2, skeletal muscle 20.0 69 0.0023 21.4 2.7 21 11-31 7-29 (72)
323 2kmk_A Zinc finger protein GFI 20.0 39 0.0013 22.9 1.3 36 10-56 2-40 (82)
324 2lvu_A Zinc finger and BTB dom 25.3 22 0.00076 17.8 0.0 11 10-20 3-13 (26)
No 1
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=100.00 E-value=7.2e-33 Score=266.58 Aligned_cols=268 Identities=13% Similarity=0.107 Sum_probs=229.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccC---------CCCchHHHHHHHHHhcCCChhHHHhHhhcc
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSD---------AGSDECDEALSILYHLNVSESYLKSIVINN 182 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~---------~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~ 182 (407)
+.+..|++.|.+++.+ +++|+.|++.|+++.|+.+|..+. .+..++++|+++|.+|+.+++.++..+...
T Consensus 47 ~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 5567899999999987 899999999999999999996321 112469999999999999887778877655
Q ss_pred chhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C-CchhhhhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCC
Q 040073 183 GEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A-DPFQLISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 183 gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
+| +||.|+.+|++++.++++.|+++|++|+.. + +++..+. +.|+|++||++| +++ +.++++.|+.+|+||+.
T Consensus 126 ~G-aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~-~~G~Ip~Lv~lL~~~~---~~~~~~~A~~aL~nLs~ 200 (354)
T 3nmw_A 126 KG-CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVK---KESTLKSVLSALWNLSA 200 (354)
T ss_dssp HH-HHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHH-HTTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHT
T ss_pred CC-cHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHH-HCCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHHc
Confidence 54 899999999999999999999999999875 2 3445555 468999999975 455 88999999999999999
Q ss_pred -CCchHHHHH-hcCchHHHHHHhhcccch---hHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchh
Q 040073 260 -WGRNRIKAV-EGGGVSVLVDLLLDVTER---RVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAA 330 (407)
Q Consensus 260 -~~~n~~~~v-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~ 330 (407)
.++|+..++ ..|+||.|+++|..+.+. ++++.|+++|.+|+. ++++|..+.+ .|++|.|+++|.+++...
T Consensus 201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v 279 (354)
T 3nmw_A 201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTI 279 (354)
T ss_dssp TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHH
T ss_pred cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHH
Confidence 667899988 799999999999876322 589999999999995 7888888877 689999999888888899
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
++.|+.+|++++.. +.+.+..+++.|+++.|+.+|++ +++++|+.|+++|..|...
T Consensus 280 ~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s-~~~~i~~~A~~aL~nL~~~ 335 (354)
T 3nmw_A 280 VSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN 335 (354)
T ss_dssp HHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence 99999999999964 34568889999999999999986 4899999999999999875
No 2
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.98 E-value=1.8e-31 Score=264.43 Aligned_cols=265 Identities=13% Similarity=0.121 Sum_probs=226.5
Q ss_pred HHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc-------C--CCCchHHHHHHHHHhcCCChhHHHhHhhccchh
Q 040073 115 RKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS-------D--AGSDECDEALSILYHLNVSESYLKSIVINNGEE 185 (407)
Q Consensus 115 ~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~-------~--~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~ 185 (407)
..|++.|.+++.+ +++|+.|++.|++++|+.+|... . ....++++|+++|.+|+.+++.++..+...+|
T Consensus 166 ~qAv~aL~nls~~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~G- 243 (458)
T 3nmz_A 166 CPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKG- 243 (458)
T ss_dssp HHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHH-
T ss_pred HHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCC-
Confidence 4899999999775 99999999999999999999632 0 11235899999999999988777777765554
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhcc-C-CchhhhhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCC-CC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEV-A-DPFQLISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCP-WG 261 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~-~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~-~~ 261 (407)
+||.|+.+|++++.++++.|+++|++|+.. + +++..+. +.|+|++||++| +++ +.++++.|+.+|+||+. .+
T Consensus 244 aIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~-~~GaI~~LV~lLl~s~---~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 244 CMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLR-EVGSVKALMECALEVK---KESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHH-HTTHHHHHHHHHTTCC---SHHHHHHHHHHHHHHHHHCH
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHH-HcCCHHHHHHHHhcCC---CHHHHHHHHHHHHHHccCCH
Confidence 899999999999999999999999999874 2 3445555 468999999975 555 88999999999999999 77
Q ss_pred chHHHHH-hcCchHHHHHHhhcccch---hHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073 262 RNRIKAV-EGGGVSVLVDLLLDVTER---RVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAASDR 333 (407)
Q Consensus 262 ~n~~~~v-~~G~v~~Lv~lL~~~~~~---~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 333 (407)
+|+..++ +.|++|.|+++|..+.+. ++++.|+++|.+|+. +++++..+++ .|++|.|+.+|.+++...++.
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHH
Confidence 8999998 799999999999876322 489999999999994 7888888887 689999999888888899999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
|+.+|++++.. +.+.+..+++.|+++.|+.+|++ +++++++.|+++|..|...
T Consensus 399 A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s-~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 399 ACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHS-KHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTC-SSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHHcC
Confidence 99999999964 34578889999999999999985 5899999999999999874
No 3
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.97 E-value=3.3e-29 Score=250.31 Aligned_cols=283 Identities=13% Similarity=0.085 Sum_probs=231.4
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 177 (407)
.++.+++.|.+++ +.|..|+..|++++.+++.++..+++.|+||.|+++|.+++. .+++.|+++|.+|+.++++++.
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~--~~~~~A~~aL~nLa~~~~~~k~ 80 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ--NVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCH--HHHHHHHHHHHHHHSSCHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHHHH
Confidence 4788999999887 899999999999998888889999999999999999997654 5699999999999988667888
Q ss_pred HhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc--------cCC-----CCC
Q 040073 178 IVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR--------DHH-----QFS 243 (407)
Q Consensus 178 ~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~--------~~~-----~~~ 243 (407)
.+.+.| ++|.|+.+|+ +++.++++.|+++|.+|+..++++..+. . |++++|+++|. ++. ..+
T Consensus 81 ~i~~~G--~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~-~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 81 ETRRQN--GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELI-A-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHTT--CHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHH-H-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHcC--CHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHH-h-ccHHHHHHHHhccccccccCccchhccccc
Confidence 888877 6999999999 8899999999999999998866666565 4 88999999993 220 014
Q ss_pred HHHHHHHHHHHHHhCCCCchHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHh-------------
Q 040073 244 QQASKAALKLLVELCPWGRNRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAE------------- 304 (407)
Q Consensus 244 ~~~~~~A~~aL~~L~~~~~n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~------------- 304 (407)
.++.+.|+++|+||+..++++..+++. |++++|+.+|.++ .+..+++.++++|.+|+...+
T Consensus 157 ~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~ 236 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYN 236 (457)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccc
Confidence 567779999999999998899999997 9999999999862 245788999999999973211
Q ss_pred --------------------------------------hHHHHHhccCchHHHHHHHHcC-CchhhHHHHHHHHHHhccC
Q 040073 305 --------------------------------------GRAELLKHGAGLAVVSKKILRV-SHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 305 --------------------------------------~r~~i~~~~g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~ 345 (407)
+...++ +.++++.|+.+|... ++..++.|+++|+++|.+.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~ 315 (457)
T 1xm9_A 237 ARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASK 315 (457)
T ss_dssp C----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCS
T ss_pred cccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCc
Confidence 111122 246788899988765 4789999999999999865
Q ss_pred Cch--HHHHHHH-HhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 346 ATA--RVLQEML-QVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 346 ~~~--~~~~~~~-~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
... ...+.++ +.|+++.|+.+|++ ++.+++++|+++|+.|.+.
T Consensus 316 ~~~~~~~~~~~v~~~~~l~~Lv~LL~~-~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 316 GLMSSGMSQLIGLKEKGLPQIARLLQS-GNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp SSHHHHHHHHHHTTSCCHHHHHHHTTC-SCHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHHHcCCchHHHHHHhC-CCHhHHHHHHHHHHHHhcC
Confidence 442 2223444 58999999999985 5899999999999999773
No 4
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.96 E-value=1.5e-28 Score=243.45 Aligned_cols=286 Identities=16% Similarity=0.144 Sum_probs=234.2
Q ss_pred ChhhHHHHHHHhcCC------------C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcH----------HHHHHHhhccC
Q 040073 96 DKTQIVKILNDAKKS------------P-STGRKCLRRLRSITLQSERNRSCLEAAGAI----------EFLATIITKSD 152 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~------------~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i----------~~Lv~lL~~~~ 152 (407)
+.+-++.|++.|..+ + +.+.+|+++|.+++...++.....++.|++ +.+++++.+..
T Consensus 68 ~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 147 (458)
T 3nmz_A 68 QSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHE 147 (458)
T ss_dssp HHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred HCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 456688889888742 2 778999999999999988888888888888 66777777653
Q ss_pred CCCc-----hH-------HHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-----------CChhHHHHHHHHH
Q 040073 153 AGSD-----EC-------DEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-----------GNYQSRSYAIMLL 209 (407)
Q Consensus 153 ~~~~-----~~-------~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-----------~~~~~~~~a~~~L 209 (407)
.+.+ +. .+|+++|.+++.++ ++++.+.+.| +++.|+.+|.. .+..++.+|+++|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G--~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL 224 (458)
T 3nmz_A 148 PGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELG--GLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMAL 224 (458)
T ss_dssp SSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTT--HHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred cccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCC--CHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHH
Confidence 1111 23 39999999998774 5788888877 69999999952 3467899999999
Q ss_pred HHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC--CchHHHHHhcCchHHHHHHhhcccch
Q 040073 210 KSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW--GRNRIKAVEGGGVSVLVDLLLDVTER 286 (407)
Q Consensus 210 ~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~ 286 (407)
.+|+..++..+ .+....|+|++||.+|+++ ++++++.|+++|+||+.. +++|..+++.|+||+|+++|....+.
T Consensus 225 ~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~---~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~ 301 (458)
T 3nmz_A 225 TNLTFGDVANKATLCSMKGCMRALVAQLKSE---SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKE 301 (458)
T ss_dssp HHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSH
T ss_pred HHHhCCCcccHHHHHHcCCcHHHHHHHHhCC---CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCH
Confidence 99998766444 4444567899999999988 999999999999999984 46899999999999999986553367
Q ss_pred hHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc----hhhHHHHHHHHHHhcc-CCchHHHHHHHHhChH
Q 040073 287 RVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH----AASDRAVRILCSVCKF-SATARVLQEMLQVGVV 360 (407)
Q Consensus 287 ~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~----~~~e~a~~~L~~l~~~-~~~~~~~~~~~~~g~i 360 (407)
.+++.|+.+|++|+. ++++|.+++...|++|.|+++|...++ ..++.|+.+|++|+.. ..+.+.+..+++.|++
T Consensus 302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i 381 (458)
T 3nmz_A 302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381 (458)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence 899999999999999 788999998668999999998776554 3799999999999962 1133468888999999
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 361 SKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 361 ~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+.|+.+|++ ++..+++.|+++|..|..
T Consensus 382 ~~Lv~LL~~-~~~~v~~~A~~aL~nLa~ 408 (458)
T 3nmz_A 382 QTLLQHLKS-HSLTIVSNACGTLWNLSA 408 (458)
T ss_dssp HHHHHHSSC-SCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CChHHHHHHHHHHHHHHc
Confidence 999999985 589999999999999873
No 5
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.96 E-value=1.7e-28 Score=248.35 Aligned_cols=288 Identities=11% Similarity=0.056 Sum_probs=231.9
Q ss_pred CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-h
Q 040073 95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS-E 172 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~ 172 (407)
.....|+.+++.|.+++ +.|..|+..|++++..++++|..+++.|+||.|+++|.+++. .++++|+++|.+|+.+ +
T Consensus 45 ~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~--~vq~~Aa~AL~nLa~~~~ 122 (584)
T 3l6x_A 45 WRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK--EVHLGACGALKNISFGRD 122 (584)
T ss_dssp CCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSH--HHHHHHHHHHHHHTSSSC
T ss_pred cccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCH--HHHHHHHHHHHHHHccCC
Confidence 45667999999999888 889999999999999889999999999999999999998765 5799999999999985 4
Q ss_pred hHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc---C---------
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD---H--------- 239 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~--------- 239 (407)
++++..|.+.| +|+.|+.+|++ ++.+++++|+.+|++|+..++++..++. |++++|++++.. +
T Consensus 123 ~~nk~~I~~~G--aIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~~~~ 198 (584)
T 3l6x_A 123 QDNKIAIKNCD--GVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPNEDC 198 (584)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC-------
T ss_pred HHHHHHHHHcC--CHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhcccccccccccccc
Confidence 56888888887 69999999997 5788999999999999998888887773 569999998720 0
Q ss_pred ---CCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcCHhhHH--
Q 040073 240 ---HQFSQQASKAALKLLVELCPWGR-NRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRCAEGRA-- 307 (407)
Q Consensus 240 ---~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~~~~r~-- 307 (407)
+..+.+++++|+++|+||+...+ +|..+++. |++++|+.+|.+. .+...++.|+++|.+|+...+...
T Consensus 199 k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~ 278 (584)
T 3l6x_A 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQ 278 (584)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTT
T ss_pred cccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccc
Confidence 00157999999999999999765 58889884 6778999999752 256789999999999997632110
Q ss_pred -----H---------HHhcc---------CchHHHHHHHHcC-CchhhHHHHHHHHHHhccCCc--hHHHHHHHHhChHH
Q 040073 308 -----E---------LLKHG---------AGLAVVSKKILRV-SHAASDRAVRILCSVCKFSAT--ARVLQEMLQVGVVS 361 (407)
Q Consensus 308 -----~---------i~~~~---------g~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~--~~~~~~~~~~g~i~ 361 (407)
. ..... ++|+.|+.+|... ++..+|.|+.+|++||.+... ...+..+.+.|+++
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp 358 (584)
T 3l6x_A 279 AERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALS 358 (584)
T ss_dssp CCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHH
T ss_pred hhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHH
Confidence 0 01112 3456778877544 588999999999999975432 12333444579999
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 362 KLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 362 ~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.|+.+|+++ ++.+++.|.++|+.|+..
T Consensus 359 ~Lv~LL~s~-~~~v~~~A~~aL~nLs~~ 385 (584)
T 3l6x_A 359 AIADLLTNE-HERVVKAASGALRNLAVD 385 (584)
T ss_dssp HHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence 999999954 899999999999999874
No 6
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.96 E-value=6.9e-28 Score=244.12 Aligned_cols=282 Identities=16% Similarity=0.192 Sum_probs=241.8
Q ss_pred CChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 95 VDKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
++.+.|+.|++.|+.++ ..|.+|+++|.+++..+++++..+++.|+||.|+++|.+++. .+++.|+++|.+++.+.
T Consensus 97 i~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~--~v~e~A~~aL~nLa~d~ 174 (510)
T 3ul1_B 97 IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HISEQAVWALGNIAGDG 174 (510)
T ss_dssp HHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCC
Confidence 34678999999997544 789999999999999999999999999999999999998765 57999999999999988
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
+..+..+.+.| +++.|+.+|.+.+ .....+++++|.+++........+....|+++.|+.+|.++ +++++
T Consensus 175 ~~~r~~v~~~G--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~ 249 (510)
T 3ul1_B 175 SAFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVL 249 (510)
T ss_dssp HHHHHHHHHTT--CHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS---CHHHH
T ss_pred HHHHHHHHHcC--ChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC---CHHHH
Confidence 77888888877 6999999998654 34678999999999987766655555568999999999998 99999
Q ss_pred HHHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHc
Q 040073 248 KAALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILR 325 (407)
Q Consensus 248 ~~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~ 325 (407)
..|+++|.+|+....++ ..+++.|+++.|+++|.+. +..++..++.+|.+++...+ .+..+++ .|+++.|+.+|.+
T Consensus 250 ~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~ 327 (510)
T 3ul1_B 250 ADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTN 327 (510)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-CTTC
T ss_pred HHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC-ChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHHHhcC
Confidence 99999999999876654 4557899999999999986 78999999999999987654 4555555 6899999998777
Q ss_pred CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 326 VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 326 ~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.++..++.|+.+|.+++.+.. ..+..+++.|+++.|+.+|++ ++..+|+.|+++|..+..
T Consensus 328 ~~~~v~~~A~~aL~nl~a~~~--~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~Aa~aL~Nl~~ 387 (510)
T 3ul1_B 328 PKTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSK-ADFKTQKEAAWAITNYTS 387 (510)
T ss_dssp SSHHHHHHHHHHHHHHTTSCH--HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCcH--HHHHHHHhcCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHc
Confidence 778899999999999998543 467888899999999999985 589999999999998865
No 7
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.96 E-value=3.3e-27 Score=246.53 Aligned_cols=282 Identities=14% Similarity=0.129 Sum_probs=240.2
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-----------------------------hHH---HHHHhcCcHH
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-----------------------------RNR---SCLEAAGAIE 142 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-----------------------------~~r---~~i~~~G~i~ 142 (407)
+.+.|+.|+..|++.+ ..++.|++.|.+++...+ .++ +.++++|++|
T Consensus 419 d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp 498 (810)
T 3now_A 419 DKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITT 498 (810)
T ss_dssp CHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHH
T ss_pred ccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHH
Confidence 4678999999998877 889999999999997531 233 7888999999
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073 143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI 222 (407)
Q Consensus 143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 222 (407)
.|+.+|++++. .++++|+++|.|++.+.+ ++..+.+.| +++.|+.+|++++...+++|+++|.+|+...+....+
T Consensus 499 ~LV~LL~s~s~--~vqe~Aa~aL~NLA~d~~-~r~~Vv~~G--aip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~ 573 (810)
T 3now_A 499 ALCALAKTESH--NSQELIARVLNAVCGLKE-LRGKVVQEG--GVKALLRMALEGTEKGKRHATQALARIGITINPEVSF 573 (810)
T ss_dssp HHHHHHTCCCH--HHHHHHHHHHHHHHTSHH-HHHHHHHTT--HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHT
T ss_pred HHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHCC--CHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhh
Confidence 99999998765 569999999999997654 777777777 7999999999999999999999999998765544333
Q ss_pred hc--hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 223 SV--KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 223 ~~--~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
.. ..|++++|+.+|..+ .+...+..|+++|.||+.. ++++..++++|+++.|+++|.++ +..+++.|+.+|.+|
T Consensus 574 ~~~~~~~aIppLv~LL~~~--~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~-~~~Vq~~A~~~L~NL 650 (810)
T 3now_A 574 SGQRSLDVIRPLLNLLQQD--CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-HLYLTRAAAQCLCNL 650 (810)
T ss_dssp TTHHHHHTHHHHHHTTSTT--SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSC-CTTHHHHHHHHHHHH
T ss_pred cchhhhcHHHHHHHHhCCC--CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence 21 246899999999865 2445567899999999996 46899999999999999999987 789999999999999
Q ss_pred hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHH-hChHHHHHHHHhcCCCHHHHHH
Q 040073 300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQVDASVKTKER 378 (407)
Q Consensus 300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~k~~ 378 (407)
+.+++.+..++...|+++.|+.++...+...++.|+++|++++.++. ...+.+++ .|++++|+.+|++ ++.+.|+.
T Consensus 651 a~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~--~~~~~ii~~~g~I~~Lv~LL~s-~d~~vq~~ 727 (810)
T 3now_A 651 VMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSV--KCCEKILAIASWLDILHTLIAN-PSPAVQHR 727 (810)
T ss_dssp TTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCH--HHHHHHHTSTTHHHHHHHHHTC-SSHHHHHH
T ss_pred hCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCH--HHHHHHHHHcCCHHHHHHHHCC-CCHHHHHH
Confidence 99999998888546889999997777678999999999999998533 35788888 8999999999995 59999999
Q ss_pred HHHHHHHHHh
Q 040073 379 AREILKLNAR 388 (407)
Q Consensus 379 A~~lL~~l~~ 388 (407)
|.+.|..+..
T Consensus 728 A~~aL~NL~~ 737 (810)
T 3now_A 728 GIVIILNMIN 737 (810)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999988865
No 8
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.96 E-value=1.4e-27 Score=238.63 Aligned_cols=282 Identities=13% Similarity=0.114 Sum_probs=226.2
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhh-ccCCCCchHHHHHHHHHhcCCChh
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIIT-KSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
+.+.|+.|++.|++++ ..+..|++.|++++.+++++|..+++.|+||.|+++|. +++. .++++|+++|.+|+.++
T Consensus 42 ~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~~~--~~~~~a~~aL~nLa~~~- 118 (457)
T 1xm9_A 42 QLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNA--EIQKQLTGLLWNLSSTD- 118 (457)
T ss_dssp HTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCCCH--HHHHHHHHHHHHHHTSS-
T ss_pred HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCCCH--HHHHHHHHHHHHHhcCH-
Confidence 4678999999999887 88999999999999988999999999999999999998 5443 56999999999999884
Q ss_pred HHHhHhhccchhhHHHHHHHHh--------cC--------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc
Q 040073 174 YLKSIVINNGEEFLESLMRVLK--------CG--------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR 237 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~ 237 (407)
+++..+.+ | +++.|+.+|. ++ +.++..+|+++|++|+..++++..+....|++++|+.+|+
T Consensus 119 ~~~~~i~~-g--~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 119 ELKEELIA-D--ALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp STHHHHHH-H--HHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HhHHHHHh-c--cHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHH
Confidence 56776766 6 7999999993 33 3445569999999999875555555443388999998876
Q ss_pred cC------C-C---------------------------------------------------------------------
Q 040073 238 DH------H-Q--------------------------------------------------------------------- 241 (407)
Q Consensus 238 ~~------~-~--------------------------------------------------------------------- 241 (407)
++ + .
T Consensus 196 ~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (457)
T 1xm9_A 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKG 275 (457)
T ss_dssp HHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCG
T ss_pred hhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchH
Confidence 30 0 0
Q ss_pred --------------------CCHHHHHHHHHHHHHhCCCCch------HHHHHhcCchHHHHHHhhcccchhHHHHHHHH
Q 040073 242 --------------------FSQQASKAALKLLVELCPWGRN------RIKAVEGGGVSVLVDLLLDVTERRVCELMLNV 295 (407)
Q Consensus 242 --------------------~~~~~~~~A~~aL~~L~~~~~n------~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~ 295 (407)
.++..++.|+++|.||+..... +..+.++|++|.|+++|.++ +.+++..|+++
T Consensus 276 ~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~a 354 (457)
T 1xm9_A 276 SGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASL 354 (457)
T ss_dssp GGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHH
Confidence 1356778889999999985532 22334689999999999997 78999999999
Q ss_pred HHHHhcCHhhHHHHHhccCchHHHHHHHHcCCc------hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc
Q 040073 296 LDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH------AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV 369 (407)
Q Consensus 296 L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~------~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~ 369 (407)
|.+|+.+.+.+..+.. +++|.|+++|...++ +....++.+|.++...+. +....+.+.|++++|+.++.+
T Consensus 355 L~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~--~~~~~i~~~g~l~~L~~L~~~ 430 (457)
T 1xm9_A 355 LSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQP--QLAKQYFSSSMLNNIINLCRS 430 (457)
T ss_dssp HHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCT--HHHHHHCCHHHHHHHHHHHHC
T ss_pred HHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCH--HHHHHHHHcCCHHHHHHHHcC
Confidence 9999999888877654 689999997766532 456688889999987544 368888899999999999985
Q ss_pred CCCHHHHHHHHHHHHHHHh
Q 040073 370 DASVKTKERAREILKLNAR 388 (407)
Q Consensus 370 ~~~~~~k~~A~~lL~~l~~ 388 (407)
+.+++++++|.++|..+..
T Consensus 431 ~~~~~i~~~A~~~L~~~~~ 449 (457)
T 1xm9_A 431 SASPKAAEAARLLLSDMWS 449 (457)
T ss_dssp TTCHHHHHHHHHHHHTTSS
T ss_pred CCcHHHHHHHHHHHHHHHc
Confidence 4389999999999987543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.96 E-value=6.9e-27 Score=237.89 Aligned_cols=281 Identities=16% Similarity=0.188 Sum_probs=242.2
Q ss_pred ChhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 96 DKTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
+.+.|+.|++.|..++ ..|..|+++|.+++..+++++..+++.|+||.|+.+|.+++. .+++.|+++|.+|+.+++
T Consensus 117 ~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~--~v~e~A~~aL~nLa~~~~ 194 (529)
T 3tpo_A 117 RAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHA--HISEQAVWALGNIAGAGS 194 (529)
T ss_dssp HTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCH
T ss_pred HCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhccCH
Confidence 4678999999997543 789999999999999999999999999999999999998876 579999999999998887
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 248 (407)
..+..+.+.| +++.|+.+|...+ .....+++++|.+++...+....+....|+++.|+.+|.++ +++++.
T Consensus 195 ~~r~~i~~~g--~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~---~~~v~~ 269 (529)
T 3tpo_A 195 AFRDLVIKHG--AIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN---DPEVLA 269 (529)
T ss_dssp HHHHHHHHTT--CHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS---CHHHHH
T ss_pred HHHHHHHHcC--CcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC---cHHHHH
Confidence 8888888877 6999999998643 34678999999999987766555555568899999999998 999999
Q ss_pred HHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcC
Q 040073 249 AALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 249 ~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
.|+++|.+|+....++ ..+++.|+++.|+++|.+. +..++..++.+|.+|+.+.+ .+..++. .|+++.|+.++.+.
T Consensus 270 ~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~LL~~~ 347 (529)
T 3tpo_A 270 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT-ELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPSLLTNP 347 (529)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHHHTTCS
T ss_pred HHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC-ChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHHHHcCC
Confidence 9999999999976654 5567899999999999986 78999999999999987554 4555665 68999999988777
Q ss_pred CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 327 SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 327 s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
++..++.|+.+|.+++.+.. .....+++.|+++.|+.+|++ ++..+|+.|+++|..+..
T Consensus 348 ~~~i~~~a~~aL~nl~~~~~--~~~~~v~~~g~i~~Lv~lL~~-~~~~v~~~A~~aL~nl~~ 406 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGRQ--DQIQQVVNHGLVPFLVGVLSK-ADFKTQKAAAWAITNYTS 406 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSCH--HHHHHHHHTTHHHHHHHHHHS-SCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccH--HHHHHHHhcCcHHHHHHHhcC-CCHHHHHHHHHHHHHHHc
Confidence 78899999999999998644 467888899999999999985 589999999999988865
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.95 E-value=5.5e-28 Score=232.52 Aligned_cols=244 Identities=13% Similarity=0.076 Sum_probs=207.9
Q ss_pred ChhhHHHHHHHhcC-----------CC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHH
Q 040073 96 DKTQIVKILNDAKK-----------SP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEAL 162 (407)
Q Consensus 96 ~~~~i~~ll~~L~~-----------~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~ 162 (407)
+.+.++.|+..|.. .+ ..|..|++.|++++..++.+|..+.. .|+||.|+++|.+++. .+++.|+
T Consensus 71 ~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~--~v~~~A~ 148 (354)
T 3nmw_A 71 ELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE--DLQQVIA 148 (354)
T ss_dssp HTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCH--HHHHHHH
T ss_pred HcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCH--HHHHHHH
Confidence 45778888888742 12 67899999999999988889998875 5669999999997665 5799999
Q ss_pred HHHHhcCCC-hhHHHhHhhccchhhHHHHHHHH-hcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccC
Q 040073 163 SILYHLNVS-ESYLKSIVINNGEEFLESLMRVL-KCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDH 239 (407)
Q Consensus 163 ~~L~~L~~~-~~~~~~~i~~~gg~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~ 239 (407)
++|.+|+.+ ++.++..+.+.| +++.|+++| ++++.++++.|+.+|++|+.. ++++..+....|+++.|+++|..+
T Consensus 149 ~aL~nLs~~~~~~~k~~i~~~G--~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~ 226 (354)
T 3nmw_A 149 SVLRNLSWRADVNSKKTLREVG--SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR 226 (354)
T ss_dssp HHHHHHHTTCCHHHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred HHHHHHhccCCHHHHHHHHHCC--CHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence 999999985 456788888777 699999975 567899999999999999984 456667764579999999999876
Q ss_pred CCCCH----HHHHHHHHHHHHhCC----CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHH
Q 040073 240 HQFSQ----QASKAALKLLVELCP----WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELL 310 (407)
Q Consensus 240 ~~~~~----~~~~~A~~aL~~L~~----~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~ 310 (407)
++ ++++.|+++|+||+. .++++..+++.|++|.|+++|.++ +..+++.|+++|.+|+. +++.+..++
T Consensus 227 ---~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~ 302 (354)
T 3nmw_A 227 ---SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALW 302 (354)
T ss_dssp ---CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred ---CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCC-ChHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 33 689999999999995 778999999999999999999987 78899999999999995 688888888
Q ss_pred hccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCch
Q 040073 311 KHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATA 348 (407)
Q Consensus 311 ~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~ 348 (407)
+ .|+||.|++++...++..++.|+.+|.+|+.+.+++
T Consensus 303 ~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 303 D-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp H-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred H-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 7 689999999877778899999999999999987653
No 11
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.95 E-value=1.1e-26 Score=235.29 Aligned_cols=281 Identities=13% Similarity=0.123 Sum_probs=226.8
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
+.+.|+.|++.|.+++ +.|..|+++|++++.. +++||..|++.|+||.|+++|.+..+ ..++++|+++|++|+.+++
T Consensus 88 ~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~~-~~~~e~aa~aL~nLS~~~~ 166 (584)
T 3l6x_A 88 KLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-MDLTEVITGTLWNLSSHDS 166 (584)
T ss_dssp HTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCCS-HHHHHHHHHHHHHHTTSGG
T ss_pred HcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCCch
Confidence 4678999999999888 9999999999999985 68999999999999999999997543 2459999999999998764
Q ss_pred HHHhHhhccchhhHHHHHHHHh------------------cCChhHHHHHHHHHHHhhccCCc-hhhhhchhhhHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLK------------------CGNYQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTEIVN 234 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~ 234 (407)
++..|.+ + +++.|+++|. ..+.+++++|+++|+||+...++ +..+....|+++.||.
T Consensus 167 -~k~~I~~-~--alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~ 242 (584)
T 3l6x_A 167 -IKMEIVD-H--ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIF 242 (584)
T ss_dssp -GHHHHHH-H--THHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHH
T ss_pred -hhHHHHh-c--cHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHH
Confidence 5666664 4 5999999872 12468999999999999987654 5555555566667776
Q ss_pred Hccc-------------------------------------------------------------------------CCC
Q 040073 235 VLRD-------------------------------------------------------------------------HHQ 241 (407)
Q Consensus 235 lL~~-------------------------------------------------------------------------~~~ 241 (407)
+|++ .
T Consensus 243 ~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s-- 320 (584)
T 3l6x_A 243 IVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKES-- 320 (584)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHC--
T ss_pred HHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccC--
Confidence 6542 1
Q ss_pred CCHHHHHHHHHHHHHhCCCCc-----hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCch
Q 040073 242 FSQQASKAALKLLVELCPWGR-----NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGL 316 (407)
Q Consensus 242 ~~~~~~~~A~~aL~~L~~~~~-----n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i 316 (407)
.++.++++|++||.||+.... ++..+.++|++|.|+++|..+ +..+++.|+++|.+|+.+..++..| . .++|
T Consensus 321 ~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~~I-~-~g~i 397 (584)
T 3l6x_A 321 KTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDARNKELI-G-KHAI 397 (584)
T ss_dssp CCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCSCHHHH-H-HHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChhHHHHH-H-hCCH
Confidence 145677888888888876542 344455689999999999987 7899999999999999998888766 4 4789
Q ss_pred HHHHHHHHcC--------CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Q 040073 317 AVVSKKILRV--------SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD-ASVKTKERAREILKLNA 387 (407)
Q Consensus 317 ~~Lv~~l~~~--------s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~ 387 (407)
|.||.+|... +......|+.+|.+|+.. +.+.++.++++|+|++|+.+++++ .+++.++.|+.+|..+.
T Consensus 398 p~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~ 475 (584)
T 3l6x_A 398 PNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475 (584)
T ss_dssp HHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHH
Confidence 9999977665 245678899999999864 445788999999999999999864 38899999999999886
Q ss_pred h
Q 040073 388 R 388 (407)
Q Consensus 388 ~ 388 (407)
.
T Consensus 476 ~ 476 (584)
T 3l6x_A 476 G 476 (584)
T ss_dssp T
T ss_pred c
Confidence 4
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.95 E-value=1.6e-26 Score=235.16 Aligned_cols=285 Identities=12% Similarity=0.122 Sum_probs=243.3
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCC
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVS 171 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~ 171 (407)
+.+.|+.|+..|.+++ +.+..|+++|.+++.+++++|..+.+.|+++.|+.+|...+.. ...+..++++|.+++.+
T Consensus 160 ~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 239 (529)
T 3tpo_A 160 DGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 239 (529)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhc
Confidence 4567899999998888 8999999999999999999999999999999999999876532 22477899999999987
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
......+....+ ++|.|+.+|.+++.+++..|+++|.+++...+.+.......|+++.|+.+|.+. +..++..|+
T Consensus 240 ~~~~~~~~~~~~--~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~v~~~a~ 314 (529)
T 3tpo_A 240 KNPAPPLDAVEQ--ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPAL 314 (529)
T ss_dssp CTTCCCHHHHHH--HHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHH
T ss_pred ccchhhHHHHhh--HHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC---ChhHHHHHH
Confidence 654444444344 799999999999999999999999999987776666666679999999999998 999999999
Q ss_pred HHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHcCCch
Q 040073 252 KLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILRVSHA 329 (407)
Q Consensus 252 ~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~ 329 (407)
++|.||+... .++..+++.|+++.|+.+|.+. +..++..|+++|.+|+.+... +..+.+ .|++|.|+.++...+..
T Consensus 315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~ 392 (529)
T 3tpo_A 315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFK 392 (529)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHHHSSCHH
T ss_pred HHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHh-cCcHHHHHHHhcCCCHH
Confidence 9999999854 5777889999999999999986 789999999999999986544 555555 78999999998888899
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.++.|+.+|.+++.+.. .+....+++.|++++|+.+|.+. +++++..+...|..+-+.
T Consensus 393 v~~~A~~aL~nl~~~~~-~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 450 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 450 (529)
T ss_dssp HHHHHHHHHHHHHHHSC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC-HHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999997643 34677889999999999999864 888999998888776543
No 13
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.95 E-value=1.5e-26 Score=234.21 Aligned_cols=285 Identities=12% Similarity=0.123 Sum_probs=242.5
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCC---CchHHHHHHHHHhcCCC
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAG---SDECDEALSILYHLNVS 171 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~---~~~~~~a~~~L~~L~~~ 171 (407)
+.+.|+.|++.|.+++ +.+..|+++|.+++.+++.+|..+.+.|+++.|+.+|...+.. ...+..++++|.+++.+
T Consensus 141 ~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~ 220 (510)
T 3ul1_B 141 DGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220 (510)
T ss_dssp HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCC
T ss_pred HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhc
Confidence 4567999999999888 9999999999999999999999999999999999999876531 22477899999999987
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
......+....+ +++.|+.+|.+++.+++..|+++|.+|+...+++.......|+++.|+.+|.+. +..++..++
T Consensus 221 ~~~~~~~~~~~~--~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~v~~~al 295 (510)
T 3ul1_B 221 KNPAPPLDAVEQ--ILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT---ELPIVTPAL 295 (510)
T ss_dssp CSSCCCHHHHHH--HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS---CHHHHHHHH
T ss_pred ccchhHHHHHHh--HHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC---ChhhhhHHH
Confidence 654444444344 899999999999999999999999999987776666666679999999999998 999999999
Q ss_pred HHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh-hHHHHHhccCchHHHHHHHHcCCch
Q 040073 252 KLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE-GRAELLKHGAGLAVVSKKILRVSHA 329 (407)
Q Consensus 252 ~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~-~r~~i~~~~g~i~~Lv~~l~~~s~~ 329 (407)
++|.||+... .++..+++.|+++.|+.+|.+. +..+++.|+++|.+|+.+.. .+..+.+ .|++|.|+.++...+..
T Consensus 296 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~-~g~i~~Lv~lL~~~~~~ 373 (510)
T 3ul1_B 296 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVN-HGLVPFLVGVLSKADFK 373 (510)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSSCHH
T ss_pred HHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHh-cCCHHHHHHHHcCCCHH
Confidence 9999998854 5777889999999999999886 78999999999999998554 4555555 68999999988888899
Q ss_pred hhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 330 ASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 330 ~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.++.|+.+|.+++.+.. .+.+..+++.|++++|+.+|.+. +++++..+...|..+-++
T Consensus 374 v~~~Aa~aL~Nl~~~~~-~~~~~~L~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~~ 431 (510)
T 3ul1_B 374 TQKEAAWAITNYTSGGT-VEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQA 431 (510)
T ss_dssp HHHHHHHHHHHHHHHCC-HHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCC-HHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 99999999999998643 34677889999999999999864 788999999888776553
No 14
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.95 E-value=2.1e-26 Score=240.54 Aligned_cols=280 Identities=14% Similarity=0.125 Sum_probs=237.8
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
.+.++.|++.+++++ ..|..|++.|.+++.+ +++|..+++.|++|+|+.+|.+++. ..+++|+++|.+|+.+.+.
T Consensus 494 aGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~Vv~~Gaip~Lv~LL~s~~~--~~k~~Aa~AL~nL~~~~~p- 569 (810)
T 3now_A 494 EGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMALEGTE--KGKRHATQALARIGITINP- 569 (810)
T ss_dssp TTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHSSCH--HHHHHHHHHHHHHHHHSCH-
T ss_pred CcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHccCCH--HHHHHHHHHHHHHhcCCCh-
Confidence 356888999998877 8899999999999965 7899999999999999999998765 4599999999999864322
Q ss_pred HhHhh---ccchhhHHHHHHHHhcC-ChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCCCCHHHHHHH
Q 040073 176 KSIVI---NNGEEFLESLMRVLKCG-NYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAA 250 (407)
Q Consensus 176 ~~~i~---~~gg~~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A 250 (407)
...+. ..+ ++++|+.+|.++ +...+..|+++|.||+..++ .+..+.. .|+++.|+.+|.++ ++.+++.|
T Consensus 570 ~~~~~~~~~~~--aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~---~~~Vq~~A 643 (810)
T 3now_A 570 EVSFSGQRSLD--VIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED---HLYLTRAA 643 (810)
T ss_dssp HHHTTTHHHHH--THHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC---CTTHHHHH
T ss_pred hhhhcchhhhc--HHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC---CHHHHHHH
Confidence 22221 123 799999999865 44455789999999998764 4445554 68899999999988 89999999
Q ss_pred HHHHHHhCCCCchHHHHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCc
Q 040073 251 LKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSH 328 (407)
Q Consensus 251 ~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~ 328 (407)
+++|.||+.+++.+..+++ .|+++.|+.++.+. +..+++.|+++|.+|+. ++...+.+++..|+++.|+.++...+.
T Consensus 644 ~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~ 722 (810)
T 3now_A 644 AQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-DEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSP 722 (810)
T ss_dssp HHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSH
T ss_pred HHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCH
Confidence 9999999999899988886 79999999999886 78999999999999998 677777888757899999998888889
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhh
Q 040073 329 AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARA 389 (407)
Q Consensus 329 ~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~ 389 (407)
..++.|+.+|.+++.++ .+....++++|++++|..+++.. .+.+..+.|.+.|+.+-++
T Consensus 723 ~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 723 AVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp HHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 99999999999999853 45789999999999999999754 4789999999999998775
No 15
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=2.9e-25 Score=225.67 Aligned_cols=284 Identities=12% Similarity=0.087 Sum_probs=240.7
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
...++.+++.|.+++ +.+..|+..|+.++.... .++..+++.|++|.|+.+|.+.+. ..++..|+++|.+++.+..+
T Consensus 73 ~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~ 151 (528)
T 4b8j_A 73 LESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSE 151 (528)
T ss_dssp --CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHH
Confidence 456899999998887 889999999999976544 678889999999999999998753 24699999999999998666
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
.+..+.+.| +++.|+.+|.+++.++++.|+++|.+|+...+..+......|++++|+.+|... .++.++..|+++|
T Consensus 152 ~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~v~~~a~~~L 227 (528)
T 4b8j_A 152 NTKVVIDHG--AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH--TKLSMLRNATWTL 227 (528)
T ss_dssp HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT--CCHHHHHHHHHHH
T ss_pred HHHHHHhCC--cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC--CCHHHHHHHHHHH
Confidence 777777766 799999999999999999999999999977555444445568999999999543 2899999999999
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
.+|+...++.......|+++.|+++|.+. +..++..++++|.+|+...+.+...+...|+++.|+.+|.+.++..++.|
T Consensus 228 ~~L~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a 306 (528)
T 4b8j_A 228 SNFCRGKPQPSFEQTRPALPALARLIHSN-DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPA 306 (528)
T ss_dssp HHHHCSSSCCCHHHHTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHH
T ss_pred HHHHcCCCCCcHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHH
Confidence 99999766666666789999999999886 88999999999999998776665444447899999998887788999999
Q ss_pred HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+.+|.+++.+. ......+++.|+++.|+.+|+.+.++.+++.|.++|..|..
T Consensus 307 ~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~ 358 (528)
T 4b8j_A 307 LRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA 358 (528)
T ss_dssp HHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence 99999999854 34677888999999999999954489999999999999875
No 16
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=2.9e-25 Score=202.84 Aligned_cols=241 Identities=19% Similarity=0.222 Sum_probs=210.5
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
+.|+.+++.|.+++ +.+..|++.|.+++..+++++..+.+.|+++.|+++|.+.+. .++..|+++|.+++.++++.+
T Consensus 2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~--~v~~~a~~~L~~l~~~~~~~~ 79 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDS--EVQKEAARALANIASGPDEAI 79 (252)
T ss_dssp CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHH
T ss_pred CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHcCChHHH
Confidence 35789999999887 889999999999999888899999999999999999998764 569999999999999866677
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
..+.+.| +++.|+.+|++++.+++..|+++|.+|+...+.........|+++.|+++++++ +++++..|+++|.+
T Consensus 80 ~~~~~~~--~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~---~~~~~~~a~~~L~~ 154 (252)
T 4hxt_A 80 KAIVDAG--GVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALAN 154 (252)
T ss_dssp HHHHHTT--HHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 7777776 799999999999999999999999999965544444444468999999999998 99999999999999
Q ss_pred hCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 257 LCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 257 L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
|+... .++..+++.|+++.|+++|.+. +..++..|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++..++.|
T Consensus 155 l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~v~~~a 232 (252)
T 4hxt_A 155 IASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSEVQKEA 232 (252)
T ss_dssp HTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHH
T ss_pred HHcCCHHHHHHHHHCcCHHHHHHHHCCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHHHHHHH
Confidence 99854 4567889999999999999986 78999999999999998 4555666666 7899999998887788999999
Q ss_pred HHHHHHHhccCCc
Q 040073 335 VRILCSVCKFSAT 347 (407)
Q Consensus 335 ~~~L~~l~~~~~~ 347 (407)
+.+|.+++....+
T Consensus 233 ~~~L~~l~~~~~~ 245 (252)
T 4hxt_A 233 QRALENIKSGGWL 245 (252)
T ss_dssp HHHHHHHHHTCBC
T ss_pred HHHHHHHHcCCCc
Confidence 9999999986543
No 17
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.94 E-value=1.3e-25 Score=205.79 Aligned_cols=238 Identities=16% Similarity=0.194 Sum_probs=207.1
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
...++.++..|.+++ +.+..|++.|+++...+..++..+.+.|+++.|+++|.+.+. .++..|+++|.+++.+++++
T Consensus 11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~ 88 (252)
T 4db8_A 11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQ 88 (252)
T ss_dssp TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCH--HHHHHHHHHHHHHTTSCHHH
T ss_pred cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCHHH
Confidence 345788899998888 999999999987666568899999999999999999998764 56999999999999876667
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
+..+.+.| +++.|+.+|++++.+++..|+++|.+|+...+.+.......|+++.|+++|+++ ++.++..|+++|.
T Consensus 89 ~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~---~~~v~~~a~~~L~ 163 (252)
T 4db8_A 89 IQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALS 163 (252)
T ss_dssp HHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHH
T ss_pred HHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 77777776 799999999999999999999999999988777734444568999999999988 9999999999999
Q ss_pred HhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073 256 ELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASDR 333 (407)
Q Consensus 256 ~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 333 (407)
+|+... +++..+++.|+++.|+++|.+. +..+++.|+++|.+|+. +++.+..+.+ .|+++.|++++.+.++..++.
T Consensus 164 ~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~ 241 (252)
T 4db8_A 164 NIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKE 241 (252)
T ss_dssp HHTTSCHHHHHHHHHTTCHHHHHHGGGCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSSSHHHHT
T ss_pred HHHcCChHHHHHHHHCCCHHHHHHHHCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCCHHHHHH
Confidence 999854 5777788999999999999987 88999999999999996 4566666666 689999999888778999999
Q ss_pred HHHHHHHHhc
Q 040073 334 AVRILCSVCK 343 (407)
Q Consensus 334 a~~~L~~l~~ 343 (407)
|+.+|.+++.
T Consensus 242 A~~~L~~l~~ 251 (252)
T 4db8_A 242 AQEALEKLQS 251 (252)
T ss_dssp HHHHHHTTC-
T ss_pred HHHHHHHHhc
Confidence 9999999985
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.94 E-value=1.7e-24 Score=219.86 Aligned_cols=280 Identities=14% Similarity=0.154 Sum_probs=241.8
Q ss_pred hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.+.++.|++.|.+++ ..+..|++.|.+++.++++++..+++.|+++.|+.+|.+++. .+++.|+++|.+++.+.+.
T Consensus 116 ~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~--~v~~~a~~aL~~l~~~~~~ 193 (528)
T 4b8j_A 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSD--DVREQAVWALGNVAGDSPK 193 (528)
T ss_dssp TTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHTCHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCH--HHHHHHHHHHHHHhCCChh
Confidence 467899999998764 788999999999999889999999999999999999998654 5799999999999987766
Q ss_pred HHhHhhccchhhHHHHHHHH-hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVL-KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
.+..+...| +++.|+.+| .+.+..++..|+++|.+|+...+....... .|+++.|+.+|.++ +++++..|+++
T Consensus 194 ~~~~i~~~g--~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~---~~~v~~~a~~a 267 (528)
T 4b8j_A 194 CRDLVLANG--ALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN---DEEVLTDACWA 267 (528)
T ss_dssp HHHHHHHTT--CHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred hHHHHHHCC--cHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC---CHHHHHHHHHH
Confidence 777777766 799999999 567899999999999999987544444444 58899999999988 99999999999
Q ss_pred HHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcC-Cchh
Q 040073 254 LVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRV-SHAA 330 (407)
Q Consensus 254 L~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~-s~~~ 330 (407)
|.+|+...+++ ..+++.|+++.|+++|.+. +..++..|+++|.+|+.+. ..+..++. .|+++.|+.+|.+. ++..
T Consensus 268 L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~~v 345 (528)
T 4b8j_A 268 LSYLSDGTNDKIQAVIEAGVCPRLVELLLHP-SPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNLKKSI 345 (528)
T ss_dssp HHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCCCHHH
T ss_pred HHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC-ChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCCcHHH
Confidence 99999876654 5677899999999999987 7899999999999999854 45555555 78999999988887 7899
Q ss_pred hHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 331 SDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 331 ~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
++.|+.+|.+++.. +......+++.|+++.|+.+|+.+ ++.+|+.|+++|..+...
T Consensus 346 ~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 346 KKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence 99999999999974 344677888899999999999965 899999999999998774
No 19
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.94 E-value=7.1e-25 Score=200.23 Aligned_cols=241 Identities=18% Similarity=0.225 Sum_probs=209.3
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
|.|+.|+++|.+++. .++..|+++|.+++..+++++..+.+.| +++.|+.+|++++.+++..|+++|.+|+...+.
T Consensus 2 ~~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 77 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDAG--GVEVLVKLLTSTDSEVQKEAARALANIASGPDE 77 (252)
T ss_dssp CHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred CcHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHCC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence 679999999998774 5699999999999987766777777776 799999999999999999999999999987444
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
.+......|+++.|+.+|+++ +++++..|+++|.+|+. .++++..+++.|+++.|+++|.+. +..++..++++|.
T Consensus 78 ~~~~~~~~~~i~~l~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~-~~~~~~~a~~~L~ 153 (252)
T 4hxt_A 78 AIKAIVDAGGVEVLVKLLTST---DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST-DSEVQKEAARALA 153 (252)
T ss_dssp HHHHHHHTTHHHHHHHHTTCS---SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 444444568999999999988 99999999999999995 667899999999999999999986 7899999999999
Q ss_pred HHhcCHhh-HHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHH
Q 040073 298 LLCRCAEG-RAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTK 376 (407)
Q Consensus 298 ~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k 376 (407)
+|+...+. +..+.+ .|+++.|+.++.+.++..++.|+.+|.+++.. +...+..+.+.|+++.|+.++++ +++.+|
T Consensus 154 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~ 229 (252)
T 4hxt_A 154 NIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTS-TDSEVQ 229 (252)
T ss_dssp HHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGC-SCHHHH
T ss_pred HHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCC-CcHHHH
Confidence 99985544 456666 78999999988877789999999999999974 44568888899999999999985 589999
Q ss_pred HHHHHHHHHHHhhcc
Q 040073 377 ERAREILKLNARAWR 391 (407)
Q Consensus 377 ~~A~~lL~~l~~~~~ 391 (407)
+.|.++|..|.....
T Consensus 230 ~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 230 KEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHHHHHHHHTCB
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999999988643
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.93 E-value=5.2e-24 Score=216.57 Aligned_cols=280 Identities=11% Similarity=0.100 Sum_probs=240.0
Q ss_pred hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.+.++.|++.|.++ + ..+..|++.|.+++..+++++..+++.|+++.|+.+|.+++. .+++.|+++|.+++.+.+.
T Consensus 129 ~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~--~vr~~A~~aL~~l~~~~~~ 206 (530)
T 1wa5_B 129 AGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSV--EVKEQAIWALGNVAGDSTD 206 (530)
T ss_dssp TTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCH--HHHHHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCcc
Confidence 46688999999876 5 889999999999999888899999999999999999997654 5799999999999987666
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
.+..+...| +++.|+.+|.+.+.+++..|+++|.+|+... +....... .|+++.|+.+|.++ +++++..|+++
T Consensus 207 ~~~~~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~---d~~v~~~a~~~ 280 (530)
T 1wa5_B 207 YRDYVLQCN--AMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM---DTETLVDACWA 280 (530)
T ss_dssp HHHHHHHTT--CHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred chHHHHHcC--cHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC---CHHHHHHHHHH
Confidence 777777666 7999999999999999999999999999775 33333333 58899999999988 89999999999
Q ss_pred HHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073 254 LVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAAS 331 (407)
Q Consensus 254 L~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~ 331 (407)
|.+|+... +....+++.|+++.|+++|.+. +..++..|+.+|.+++... .....+.. .|+++.|+.+|.+.+...+
T Consensus 281 L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~~~vr 358 (530)
T 1wa5_B 281 ISYLSDGPQEAIQAVIDVRIPKRLVELLSHE-STLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKENIK 358 (530)
T ss_dssp HHHHHSSCHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHH
T ss_pred HHHHhCCCHHHHHHHHhcCcHHHHHHHHCCC-ChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCCHHHH
Confidence 99999864 4677788899999999999886 7899999999999999754 44555555 6899999998877778899
Q ss_pred HHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 332 DRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 332 e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+.|+.+|.+++.+.. +....+++.|+++.|+.+|+. +++.+|+.|.++|..|...
T Consensus 359 ~~A~~aL~~l~~~~~--~~~~~~~~~~~l~~L~~lL~~-~~~~v~~~a~~aL~~l~~~ 413 (530)
T 1wa5_B 359 KEACWTISNITAGNT--EQIQAVIDANLIPPLVKLLEV-AEYKTKKEACWAISNASSG 413 (530)
T ss_dssp HHHHHHHHHHTTSCH--HHHHHHHHTTCHHHHHHHHHH-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH--HHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHhc
Confidence 999999999997543 356778889999999999985 5899999999999988764
No 21
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.93 E-value=1.4e-23 Score=208.04 Aligned_cols=279 Identities=13% Similarity=0.151 Sum_probs=237.2
Q ss_pred hhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 98 TQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 98 ~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
+.++.|++.|.++ + ..|..|++.|.+++..+++++..+++.|++|.|+++|.+++. .+++.|+++|.+++.+.+..
T Consensus 64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~ 141 (450)
T 2jdq_A 64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMC 141 (450)
T ss_dssp THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHH
T ss_pred CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHH
Confidence 6788999999877 5 889999999999999878888889999999999999998654 56999999999999887667
Q ss_pred HhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
+..+...| +++.|+.+|++ .+.+++..|+++|.+|+... +....... .|+++.|+.++.++ +++++..++++
T Consensus 142 ~~~~~~~~--~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~---~~~v~~~a~~~ 215 (450)
T 2jdq_A 142 RDYVLDCN--ILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS---DTDVLADACWA 215 (450)
T ss_dssp HHHHHHTT--CHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC---CHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC---CHHHHHHHHHH
Confidence 77777665 79999999996 68999999999999999764 22222223 58899999999988 99999999999
Q ss_pred HHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073 254 LVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASD 332 (407)
Q Consensus 254 L~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e 332 (407)
|.+|+... +++..+++.|+++.|+++|.+. +..++..|+.+|.+++...+.....+...|+++.|+.++.+.++..++
T Consensus 216 L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~ 294 (450)
T 2jdq_A 216 LSYLSDGPNDKIQAVIDAGVCRRLVELLMHN-DYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKK 294 (450)
T ss_dssp HHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC-chhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHH
Confidence 99999864 5677788899999999999876 789999999999999987655444333368999999988777788999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.|+.+|.+++.+. ......+++.|+++.|+.+|+. +++.+|+.|+++|..|..
T Consensus 295 ~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~-~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 295 EACWTISNITAGN--RAQIQTVIDANIFPALISILQT-AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp HHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHH-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhc-CCHHHHHHHHHHHHHHHc
Confidence 9999999999753 3356778889999999999985 489999999999998865
No 22
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.92 E-value=2.7e-24 Score=197.01 Aligned_cols=238 Identities=17% Similarity=0.184 Sum_probs=201.5
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
...+.++.+|.+++. .++..|+++|.++...++..+..+.+.| +++.|+.+|++++.+++..|+++|.+++...+.
T Consensus 12 ~~~~~~~~~L~s~~~--~~~~~a~~~L~~~l~~~~~~~~~~~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~ 87 (252)
T 4db8_A 12 SELPQMTQQLNSDDM--QEQLSATRKFSQILSDGNEQIQAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNE 87 (252)
T ss_dssp CSHHHHHHHHHSSCS--SHHHHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred chHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCCchHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHH
Confidence 357889999998876 4699999999764443555666666666 799999999999999999999999999975444
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
.+......|+++.|+.+|+++ ++++++.|+++|.||+..++++ ..+++.|+++.|+++|.++ +..+++.|+++|.
T Consensus 88 ~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~~L~ 163 (252)
T 4db8_A 88 QIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-NEQILQEALWALS 163 (252)
T ss_dssp HHHHHHHTTHHHHHHHGGGCS---CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 444444468999999999998 9999999999999999998888 8889999999999999886 8899999999999
Q ss_pred HHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHH
Q 040073 298 LLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTK 376 (407)
Q Consensus 298 ~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k 376 (407)
+|+... +.+..+.+ .|+++.|+.++.+.++..++.|+.+|.+++... .+.+..+++.|+++.|+.++++ +++.+|
T Consensus 164 ~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~-~~~~v~ 239 (252)
T 4db8_A 164 NIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSH-ENEKIQ 239 (252)
T ss_dssp HHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTC-SSSHHH
T ss_pred HHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCC-CCHHHH
Confidence 999854 45555555 689999999888778899999999999999743 3467888899999999999985 588999
Q ss_pred HHHHHHHHHHHh
Q 040073 377 ERAREILKLNAR 388 (407)
Q Consensus 377 ~~A~~lL~~l~~ 388 (407)
+.|.++|..|.+
T Consensus 240 ~~A~~~L~~l~~ 251 (252)
T 4db8_A 240 KEAQEALEKLQS 251 (252)
T ss_dssp HTHHHHHHTTC-
T ss_pred HHHHHHHHHHhc
Confidence 999999987754
No 23
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.92 E-value=1.1e-23 Score=214.12 Aligned_cols=281 Identities=13% Similarity=0.120 Sum_probs=237.1
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
...++.+++.|.+++ +.+..|+..|+.+... ...++..+++.|++|.|+.+|.+.++ ..++..|+++|.+++.+..+
T Consensus 86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~ 164 (530)
T 1wa5_B 86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSA 164 (530)
T ss_dssp -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHH
Confidence 345889999998887 8899999999999654 34567788899999999999988633 24699999999999987666
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
.+..+...| +++.|+.+|++++.++++.|+++|.+|+...+..+......|+++.|+.++.+. +.+++..|+++|
T Consensus 165 ~~~~~~~~g--~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L 239 (530)
T 1wa5_B 165 QTKVVVDAD--AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN---KPSLIRTATWTL 239 (530)
T ss_dssp HHHHHHHTT--CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC---CHHHHHHHHHHH
T ss_pred HHHHHHHCC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC---CHHHHHHHHHHH
Confidence 667776666 799999999999999999999999999977544444444468999999999987 999999999999
Q ss_pred HHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073 255 VELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKKILRVSHAASD 332 (407)
Q Consensus 255 ~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e 332 (407)
.+|+... ++.......|+++.|+.+|.+. +..++..++++|.+|+... +.+..++. .|+++.|+.+|.+.+...++
T Consensus 240 ~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~-d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~~~v~~ 317 (530)
T 1wa5_B 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHESTLVQT 317 (530)
T ss_dssp HHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSCHHHHH
T ss_pred HHHhCCCCCCCcHHHHHhHHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCChhhHH
Confidence 9999875 5556667789999999999886 7899999999999999864 45666665 68999999988877788999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.|+.+|.+++.+. ......+++.|+++.|+.+|+.+ ++..++.|.++|..|..
T Consensus 318 ~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~ 370 (530)
T 1wa5_B 318 PALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA 370 (530)
T ss_dssp HHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence 9999999999754 34577788899999999999854 89999999999999875
No 24
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.92 E-value=3.5e-23 Score=209.67 Aligned_cols=283 Identities=14% Similarity=0.105 Sum_probs=233.8
Q ss_pred hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.+.++.+++.|.++ + +.+..|+..|++++.+ ++++..+.+.|++|.|+++|.+++. .++..|+++|.+++.++++
T Consensus 58 ~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~ 134 (529)
T 1jdh_A 58 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEG 134 (529)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCTT
T ss_pred cchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcc
Confidence 46788999998744 5 8899999999999886 6799999999999999999998764 5699999999999987656
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
.+..+.+.| +++.|+.+|++++.+.+..++.+|.+++...+ ++..+.. .|+++.|+.+|+++ .+...+..++.+
T Consensus 135 ~~~~i~~~g--~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~--~~~~~~~~a~~~ 209 (529)
T 1jdh_A 135 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV 209 (529)
T ss_dssp HHHHHHHHT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred hHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhC--ChHHHHHHHHHH
Confidence 677777666 79999999999999999999999999987544 4444444 58899999999987 356777888999
Q ss_pred HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073 254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV 295 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~ 295 (407)
|++|+..++++..+++.|+++.|++++.++ .+.++++.++++
T Consensus 210 L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~ 289 (529)
T 1jdh_A 210 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 289 (529)
T ss_dssp HHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999887777666432 256777888888
Q ss_pred HHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCc-hHHHHHHHHhChHHHHHHHHhcCC
Q 040073 296 LDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSAT-ARVLQEMLQVGVVSKLCLVLQVDA 371 (407)
Q Consensus 296 L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~-~~~~~~~~~~g~i~~Ll~ll~~~~ 371 (407)
|.+|+.+ ++++..+.+ .|+++.|++++.+.+ +..++.|+.+|++++...++ +..+..+++.|+++.|+.+|+++.
T Consensus 290 L~~L~~~~~~~~~~~~~-~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~ 368 (529)
T 1jdh_A 290 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368 (529)
T ss_dssp HHHHTTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHhcCCHHHHHHHHH-cCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence 8888875 457777777 689999999887643 68899999999999986544 335678889999999999999765
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040073 372 SVKTKERAREILKLNAR 388 (407)
Q Consensus 372 ~~~~k~~A~~lL~~l~~ 388 (407)
++..++.|.++|..+..
T Consensus 369 ~~~v~~~a~~~l~nl~~ 385 (529)
T 1jdh_A 369 HWPLIKATVGLIRNLAL 385 (529)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHhc
Confidence 57899999999988865
No 25
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.92 E-value=8.7e-23 Score=202.41 Aligned_cols=282 Identities=11% Similarity=0.082 Sum_probs=236.1
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh-hH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE-SY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~-~~ 174 (407)
.+.++.+++.+.+++ ..+..|++.|.+++.+++.++..+.+.|+++.|+.+|.+..+ ..++..|+++|.+++.+. +.
T Consensus 106 ~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~-~~v~~~a~~~L~~l~~~~~~~ 184 (450)
T 2jdq_A 106 AGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNR-LTMTRNAVWALSNLCRGKSPP 184 (450)
T ss_dssp TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCC-HHHHHHHHHHHHHHHCCSSSC
T ss_pred CCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCC-HHHHHHHHHHHHHHhCCCCCC
Confidence 457888999998877 889999999999999988999999999999999999985333 246999999999999764 22
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
....+. .+ +++.|+.+|.+++.+++..++++|.+|+...+.........|+++.|+.+|.++ +++++..|+++|
T Consensus 185 ~~~~~~-~~--~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~~L 258 (450)
T 2jdq_A 185 PEFAKV-SP--CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHN---DYKVVSPALRAV 258 (450)
T ss_dssp CCGGGT-GG--GHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCS---CHHHHHHHHHHH
T ss_pred CCHHHH-HH--HHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCC---chhHHHHHHHHH
Confidence 222233 33 799999999999999999999999999876544443444468899999999987 999999999999
Q ss_pred HHhCCCCc-hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcCCchhhH
Q 040073 255 VELCPWGR-NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRVSHAASD 332 (407)
Q Consensus 255 ~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e 332 (407)
.+|+...+ .+..+++.|+++.|+++|.+. +..++..|+++|.+++. +++....+++ .+++|.|+.++.+.++..++
T Consensus 259 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~ 336 (450)
T 2jdq_A 259 GNIVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTAEFRTRK 336 (450)
T ss_dssp HHHTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHSCHHHHH
T ss_pred HHHhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcCCHHHHH
Confidence 99998665 455578889999999999986 78999999999999997 5566666666 58999999988888889999
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 333 RAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 333 ~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.|+.+|.+++.+. +.+....+++.|+++.|+.+|+. .++++++.|...|..|...
T Consensus 337 ~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~~ 391 (450)
T 2jdq_A 337 EAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTV-MDSKIVQVALNGLENILRL 391 (450)
T ss_dssp HHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcC-CCHHHHHHHHHHHHHHHHh
Confidence 9999999999753 23356777889999999999985 4899999999999887664
No 26
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.92 E-value=1.4e-24 Score=195.63 Aligned_cols=198 Identities=13% Similarity=0.118 Sum_probs=168.6
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCc
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADP 218 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~ 218 (407)
.+|.|+++|.+++....++..|++.|.+|+..++.++..+.+.| +||.|+.+|++++.++++.|+++|++|+.. +++
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G--~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n 86 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLR--GILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN 86 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence 48999999998775334578899999999977667788888777 699999999999999999999999999975 455
Q ss_pred hhhhhchhhhHHHHHHHccc-CCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhh---cc-----------
Q 040073 219 FQLISVKQEFFTEIVNVLRD-HHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLL---DV----------- 283 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~---~~----------- 283 (407)
+..+.. .|+|++||++|++ + +.++++.|+.+|+||+..+++|..+++. ++|+|++++. .+
T Consensus 87 k~~I~~-~GaI~~Lv~lL~~~~---~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~ 161 (233)
T 3tt9_A 87 KLEVAE-LNGVPRLLQVLKQTR---DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANG 161 (233)
T ss_dssp HHHHHH-TTHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCT
T ss_pred HHHHHH-cCCHHHHHHHHccCC---CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccc
Confidence 666655 6899999999985 5 8999999999999999999999999985 6999998763 11
Q ss_pred -cchhHHHHHHHHHHHHhc-CHhhHHHHHhccCchHHHHHHHHcC------CchhhHHHHHHHHHHhcc
Q 040073 284 -TERRVCELMLNVLDLLCR-CAEGRAELLKHGAGLAVVSKKILRV------SHAASDRAVRILCSVCKF 344 (407)
Q Consensus 284 -~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~l~~~ 344 (407)
.+.+++++|.++|.+|+. ++++|+++.+.+|+|+.||.++... +.+.+|+|+.+|++|+.+
T Consensus 162 ~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 162 LLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred cchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 145889999999999988 5689999998778899999988653 467899999999999974
No 27
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.91 E-value=1.3e-22 Score=205.48 Aligned_cols=283 Identities=13% Similarity=0.137 Sum_probs=232.0
Q ss_pred CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
++.+.++.|+..|.+++ ..+..|+..|.+++.+ ..++..+.. .|+++.|+++|.+..+ ..++..|+.+|.+|+.++
T Consensus 14 ~~~~~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~-~~~~~~a~~~L~~ls~~~ 91 (529)
T 1jdh_A 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSHHR 91 (529)
T ss_dssp ---CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTSH
T ss_pred hhHhhHHHHHHHhCCCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcCc
Confidence 34667899999998777 8899999999999986 567777775 5899999999987643 246999999999999887
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
+ ++..+.+.| +++.|+.+|++++.+++..|+++|.+|+...+..+......|+++.|+++|+++ +.+.+..++.
T Consensus 92 ~-~~~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~---~~~~~~~~~~ 165 (529)
T 1jdh_A 92 E-GLLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTD 165 (529)
T ss_dssp H-HHHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC---CHHHHHHHHH
T ss_pred h-hHHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHH
Confidence 6 666666666 799999999999999999999999999988666555555568999999999988 9999999999
Q ss_pred HHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-------
Q 040073 253 LLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL------- 324 (407)
Q Consensus 253 aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~------- 324 (407)
+|.+|+.. ++++..+++.|+++.|+++|.++.+....+.++.+|.+|+.+++++..+++ .|+++.|+.++.
T Consensus 166 ~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~~~~~~ 244 (529)
T 1jdh_A 166 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 244 (529)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSSCHHHH
T ss_pred HHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCCChHHH
Confidence 99999984 678999999999999999998874566777899999999999999988887 466766665443
Q ss_pred --------------------------------cCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcC-C
Q 040073 325 --------------------------------RVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVD-A 371 (407)
Q Consensus 325 --------------------------------~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~-~ 371 (407)
..++..++.|+.+|++++.++ .+.+..+.+.|+++.|+.+|... .
T Consensus 245 ~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~ 322 (529)
T 1jdh_A 245 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD 322 (529)
T ss_dssp HHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCC
Confidence 234566777778888887643 34678888999999999999863 3
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040073 372 SVKTKERAREILKLNAR 388 (407)
Q Consensus 372 ~~~~k~~A~~lL~~l~~ 388 (407)
.+.+++.|..+|..|..
T Consensus 323 ~~~v~~~a~~~L~nl~~ 339 (529)
T 1jdh_A 323 REDITEPAICALRHLTS 339 (529)
T ss_dssp CHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 47999999999998854
No 28
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=1.1e-22 Score=211.72 Aligned_cols=283 Identities=13% Similarity=0.135 Sum_probs=233.7
Q ss_pred CChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 95 VDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 95 ~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
+..+.|+.|+..|.+++ ..|..|+..|.+++.+. .++..+.. .|+++.|+++|.+..+ ..++..|+.+|.+|+.+.
T Consensus 11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~-~~~~~~A~~~L~~Ls~~~ 88 (644)
T 2z6h_A 11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTND-VETARCTAGTLHNLSHHR 88 (644)
T ss_dssp -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTSH
T ss_pred hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCh
Confidence 45677999999998777 88999999999999874 57777776 4899999999987543 246899999999999887
Q ss_pred hHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 173 SYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 173 ~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
+ ++..+.+.| +++.|+.+|++++..++..|+++|.+|+...+..+......|+++.|+++|+++ +++.+..++.
T Consensus 89 ~-~~~~i~~~g--~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~---~~~~~~~a~~ 162 (644)
T 2z6h_A 89 E-GLLAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTD 162 (644)
T ss_dssp H-HHHHHHTTT--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHH
T ss_pred h-hHHHHHHcC--CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC---CHHHHHHHHH
Confidence 6 666666666 799999999999999999999999999988665555555568999999999998 8899999999
Q ss_pred HHHHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc------
Q 040073 253 LLVELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR------ 325 (407)
Q Consensus 253 aL~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~------ 325 (407)
+|.+|+. +++++..+++.|+++.|+++|.+......++.++.+|.+|+.++++|..+++ .|+++.|+.++..
T Consensus 163 ~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~ 241 (644)
T 2z6h_A 163 CLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLV 241 (644)
T ss_dssp HHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHH-TTHHHHHHTTTTCSCHHHH
T ss_pred HHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhcCCHHHH
Confidence 9999997 6779999999999999999998864567788999999999999999999887 5677777664433
Q ss_pred ---------------------------------CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCC
Q 040073 326 ---------------------------------VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDAS 372 (407)
Q Consensus 326 ---------------------------------~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~ 372 (407)
.+...++.|+.+|.+|+... .+.+..+.+.|+++.|+.+|....+
T Consensus 242 ~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~~~ 319 (644)
T 2z6h_A 242 QNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGD 319 (644)
T ss_dssp HHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHccCC
Confidence 34556667777777777642 3457778889999999999986433
Q ss_pred -HHHHHHHHHHHHHHHh
Q 040073 373 -VKTKERAREILKLNAR 388 (407)
Q Consensus 373 -~~~k~~A~~lL~~l~~ 388 (407)
+.+++.|..+|..|..
T Consensus 320 ~~~v~~~a~~aL~nL~~ 336 (644)
T 2z6h_A 320 REDITEPAICALRHLTS 336 (644)
T ss_dssp CHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHhc
Confidence 7999999999998854
No 29
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.91 E-value=7.2e-23 Score=213.07 Aligned_cols=283 Identities=15% Similarity=0.110 Sum_probs=233.7
Q ss_pred hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.+.++.+++.|.++ + +.+..|+..|++++.. ++++..+.+.|+++.|+++|.+.+. .++..|+++|.+++.+.+.
T Consensus 55 ~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~~~--~v~~~A~~aL~nL~~~~~~ 131 (644)
T 2z6h_A 55 PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEG 131 (644)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCCCH--HHHHHHHHHHHHHHhCcch
Confidence 46788999999865 5 8889999999999887 6799999999999999999998764 5699999999999977656
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhcc-CCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEV-ADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
.+..+.+.| +++.|+.+|++++...+..++.+|.+|+.. ++++..+.. .|+++.|+++|++. .....+..++.+
T Consensus 132 ~~~~v~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~--~~~~~~~~a~~~ 206 (644)
T 2z6h_A 132 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV 206 (644)
T ss_dssp HHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred hHHHHHHCC--ChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcC--ChHHHHHHHHHH
Confidence 677776666 799999999999988888999999999964 444555554 58899999999987 356788999999
Q ss_pred HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073 254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV 295 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~ 295 (407)
|++|+..++++..+++.|+++.|++++.+. .+.++++.|+++
T Consensus 207 L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~a 286 (644)
T 2z6h_A 207 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 286 (644)
T ss_dssp HHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999999999999999888887665431 256777888888
Q ss_pred HHHHhcC-HhhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCch-HHHHHHHHhChHHHHHHHHhcCC
Q 040073 296 LDLLCRC-AEGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATA-RVLQEMLQVGVVSKLCLVLQVDA 371 (407)
Q Consensus 296 L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~ 371 (407)
|.+|+.. ++++..+.+ .|+++.|+.++.+.+ +..++.|+.+|.+++...++. ..+..+++.|+++.|+.+|++..
T Consensus 287 L~~L~~~~~~~~~~v~~-~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~ 365 (644)
T 2z6h_A 287 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365 (644)
T ss_dssp HHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTC
T ss_pred HHHHHcCCHHHHHHHHH-cCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccC
Confidence 8888875 466777776 689999999887643 688999999999999765443 24555778999999999999765
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040073 372 SVKTKERAREILKLNAR 388 (407)
Q Consensus 372 ~~~~k~~A~~lL~~l~~ 388 (407)
++..++.|.++|..|..
T Consensus 366 ~~~v~~~a~~~L~nLa~ 382 (644)
T 2z6h_A 366 HWPLIKATVGLIRNLAL 382 (644)
T ss_dssp CHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHcc
Confidence 67999999999998865
No 30
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.91 E-value=2.4e-23 Score=187.53 Aligned_cols=200 Identities=13% Similarity=0.072 Sum_probs=169.9
Q ss_pred hhhHHHHHHHhcCCC---hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh
Q 040073 97 KTQIVKILNDAKKSP---STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~---~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~ 173 (407)
...++.+++.|.+++ +.|..|+..|++++..++.+|..+++.|+||.|+++|++++. .++++|+++|.+|+.+++
T Consensus 7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~--~vq~~Aa~aL~nLa~~~~ 84 (233)
T 3tt9_A 7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE--DVQRAVCGALRNLVFEDN 84 (233)
T ss_dssp CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCH--HHHHHHHHHHHHHHTTCH
T ss_pred hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCH
Confidence 345889999998765 456789999999999989999999999999999999998654 579999999999998766
Q ss_pred HHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cC----------
Q 040073 174 YLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DH---------- 239 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~---------- 239 (407)
+++..|.+.| +||.|+++|.+ ++.+++++|+.+|++|+..++++..+.. +++++|++++. .+
T Consensus 85 ~nk~~I~~~G--aI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 85 DNKLEVAELN--GVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHHHHHcC--CHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccc
Confidence 7888888887 69999999984 7999999999999999998888887765 46999998763 11
Q ss_pred CCCCHHHHHHHHHHHHHhCCC-CchHHHHHhc-CchHHHHHHhhcc-----cchhHHHHHHHHHHHHhcC
Q 040073 240 HQFSQQASKAALKLLVELCPW-GRNRIKAVEG-GGVSVLVDLLLDV-----TERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 240 ~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~-G~v~~Lv~lL~~~-----~~~~~~~~al~~L~~L~~~ 302 (407)
+..+++++++|+.+|+||+.. +++|+.|.+. |+|+.|+.+++.+ .+...+|.|+++|.+|+..
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 002569999999999999985 4899999985 7789999999874 1457889999999999863
No 31
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=3.3e-22 Score=178.03 Aligned_cols=197 Identities=18% Similarity=0.211 Sum_probs=172.7
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
+..+.++..|.+++ +.+..|++.|.+++..+++++..+.+.|+++.|+++|.+++. .+++.|+++|.+++.+++..+
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHTTSCHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHH
Confidence 44567777788777 889999999999998889999999999999999999998754 569999999999997776677
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
..+.+.| +++.|+.+|++++..++..|+++|.+|+...+.........|+++.|+++|+++ ++++++.|+++|.|
T Consensus 90 ~~i~~~g--~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~---~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAG--ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTT--CHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 7777776 699999999999999999999999999976655544444578999999999998 99999999999999
Q ss_pred hCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073 257 LCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 257 L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
|+.. ++++..+++.|+++.|++++.++ +..+++.|+.+|.+|+.+
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~ 210 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH 210 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence 9996 66888889999999999999986 889999999999999863
No 32
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.89 E-value=1.7e-21 Score=206.68 Aligned_cols=283 Identities=15% Similarity=0.115 Sum_probs=230.7
Q ss_pred hhhHHHHHHHhcCC-C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKS-P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~-~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
++.++.|++.|.++ + +.+..|+..|++++.. ++++..+.+.|+|+.|+.+|.+.+. .++..|+++|.+|+.+.++
T Consensus 191 ~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~~~--~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 191 PQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVD--SVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHSTT
T ss_pred cChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCChh
Confidence 36688888888754 5 8899999999999876 7889999999999999999998754 5699999999999987666
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccC-CchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVA-DPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
.+..+.+.| +++.|+.+|++++..++..++.+|.+++... +.+..+.. .|+++.|+.+|+++ .....+..++.+
T Consensus 268 ~~~~v~~~g--~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~--~~~~~~~~a~~a 342 (780)
T 2z6g_A 268 AKMAVRLAG--GLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTY--TYEKLLWTTSRV 342 (780)
T ss_dssp HHHHHHHTT--HHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred hHHHHHHcC--CHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcC--CHHHHHHHHHHH
Confidence 777777666 7999999999999999999999999998643 44445554 57899999999987 245667788999
Q ss_pred HHHhCCCCchHHHHHhcCchHHHHHHhhcc--------------------------------------cchhHHHHHHHH
Q 040073 254 LVELCPWGRNRIKAVEGGGVSVLVDLLLDV--------------------------------------TERRVCELMLNV 295 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------------------------------~~~~~~~~al~~ 295 (407)
|++|+....++..+++.|+++.|+.+|.+. .+..+++.|+++
T Consensus 343 L~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~a 422 (780)
T 2z6g_A 343 LKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGI 422 (780)
T ss_dssp HHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence 999999888999999888887777655431 156678888888
Q ss_pred HHHHhcCH-hhHHHHHhccCchHHHHHHHHcCC--chhhHHHHHHHHHHhccCCch-HHHHHHHHhChHHHHHHHHhcCC
Q 040073 296 LDLLCRCA-EGRAELLKHGAGLAVVSKKILRVS--HAASDRAVRILCSVCKFSATA-RVLQEMLQVGVVSKLCLVLQVDA 371 (407)
Q Consensus 296 L~~L~~~~-~~r~~i~~~~g~i~~Lv~~l~~~s--~~~~e~a~~~L~~l~~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~ 371 (407)
|.+|+... +.+..+.. .|+++.|+++|.+.+ ...++.|+.+|.+|+....+. ..+..+...|+++.|+.+|+...
T Consensus 423 L~~L~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~ 501 (780)
T 2z6g_A 423 LSNLTCNNYKNKMMVCQ-VGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPS 501 (780)
T ss_dssp HHHHTSSCHHHHHHHHT-TTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred HHHHHhCCHHHHHHHHH-CCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCC
Confidence 98888864 56666665 689999999887643 389999999999999765442 23557778999999999999765
Q ss_pred CHHHHHHHHHHHHHHHh
Q 040073 372 SVKTKERAREILKLNAR 388 (407)
Q Consensus 372 ~~~~k~~A~~lL~~l~~ 388 (407)
.+..++.|+++|..|..
T Consensus 502 ~~~v~~~A~~aL~nLa~ 518 (780)
T 2z6g_A 502 HWPLIKATVGLIRNLAL 518 (780)
T ss_dssp CHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHhc
Confidence 56999999999998874
No 33
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.89 E-value=1.3e-23 Score=159.22 Aligned_cols=73 Identities=34% Similarity=0.531 Sum_probs=68.4
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
.++|++|.||||+++|+|||+++|||||||.||++||.+ +.+||.|++++... .++||+.|+++|+.|+..+.
T Consensus 9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~---~l~pn~~L~~~i~~~~~~~~ 81 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN--SPTDPFNRQMLTES---MLEPVPELKEQIQAWMREKQ 81 (85)
T ss_dssp TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc--CCCCCCCcCCCChH---hcchHHHHHHHHHHHHHHhh
Confidence 468999999999999999999999999999999999985 68999999999875 89999999999999998876
No 34
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=9.1e-22 Score=175.20 Aligned_cols=195 Identities=16% Similarity=0.171 Sum_probs=170.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC-CCchH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP-WGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n~ 264 (407)
..+.|+.+|++++.+++..|+++|.+++..++.........|+++.|+++|+++ +++++..|+++|.||+. .++++
T Consensus 13 ~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~---~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 13 ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSP---NEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS---CHHHHHHHHHHHHHHTTSCHHHH
T ss_pred hhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCC---CHHHHHHHHHHHHHHhcCCcHHH
Confidence 689999999999999999999999999966555544444468999999999998 99999999999999996 55688
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhc
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCK 343 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~ 343 (407)
..+++.|+++.|+++|.+. +..+++.|+++|.+|+.+ ++.+..+.+ .|+++.|++++.+.+...++.|+.+|++++.
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 167 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIAS 167 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence 9999999999999999987 889999999999999975 445556665 6899999998887788999999999999998
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.+ .+.+..+.+.|+++.|+.+++ ++++.++++|.++|..|.+
T Consensus 168 ~~--~~~~~~~~~~g~i~~L~~ll~-~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 GG--NEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp SC--HHHHHHHHHTTHHHHHHHGGG-CSCHHHHHHHHHHHHHHCC
T ss_pred CC--cHHHHHHHHCCCHHHHHHHHh-CCCHHHHHHHHHHHHHHhc
Confidence 53 346788889999999999998 4689999999999998864
No 35
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.88 E-value=1.8e-23 Score=162.94 Aligned_cols=74 Identities=34% Similarity=0.502 Sum_probs=68.8
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..++|++|+||||+++|+|||+++|||||||.||++||.. +.+||.|++++..+ +++||+.|++.|+.|+..+.
T Consensus 23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~--~~~cP~~~~~l~~~---~L~pn~~Lk~~I~~~~~~~~ 96 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN--SPTDPFNRQTLTES---MLEPVPELKEQIQAWMREKQ 96 (100)
T ss_dssp CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS--CSBCSSSCCBCCTT---SSEECHHHHHHHHHHHHTTT
T ss_pred hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc--CCCCCCCCCCCChh---hceECHHHHHHHHHHHHHhh
Confidence 3468999999999999999999999999999999999974 78999999999874 89999999999999999876
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.88 E-value=1.8e-21 Score=206.51 Aligned_cols=277 Identities=12% Similarity=0.136 Sum_probs=234.7
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
.+.++.|++.|.+.+ ..|..|+..|.+++.+ ..++..+.+ .|+++.|+++|.++.+ ..++..|+.+|.+|+.+.+.
T Consensus 149 ~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~-~~~~~~i~~~~~~i~~Lv~~L~~~~d-~~vr~~Aa~aL~~Ls~~~~~ 226 (780)
T 2z6g_A 149 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTND-VETARCTSGTLHNLSHHREG 226 (780)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTS-HHHHHHHTTCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTSHHH
T ss_pred hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCC-ChhHHHHHhccChHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCCchh
Confidence 456788888888777 8899999999999986 567777775 4899999999987643 24699999999999988754
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
+..+.+.| +++.|+.+|++++..++..|+++|.+|+...+..+......|+++.|+.+|+++ +.+++..++.+|
T Consensus 227 -~~~i~~~g--~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~---~~~v~~~a~~aL 300 (780)
T 2z6g_A 227 -LLAIFKSG--GIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT---NVKFLAITTDCL 300 (780)
T ss_dssp -HHHHHHTT--HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC---CHHHHHHHHHHH
T ss_pred -HHHHHHcC--CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC---CHHHHHHHHHHH
Confidence 66666666 799999999999999999999999999988766665555568999999999988 899999999999
Q ss_pred HHhCC-CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073 255 VELCP-WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR 333 (407)
Q Consensus 255 ~~L~~-~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 333 (407)
.+|+. +++++..+++.|+++.|+++|.++......+.++.+|.+|+.+.+++..++. .|+++.|+.++.+.+...++.
T Consensus 301 ~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~~~~ 379 (780)
T 2z6g_A 301 QILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDPSQRLVQN 379 (780)
T ss_dssp HHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHH-TTHHHHHGGGTTCSCHHHHHH
T ss_pred HHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHH-hchHHHHHHHHcCCchHHHHH
Confidence 99997 4679999999999999999999874556677899999999999999998888 689999999887777889999
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
|+.+|.+++...... ....++++.|+.+|.+ .++.+++.|+++|..|..
T Consensus 380 a~~~L~~L~~~~~~~-----~~~~~~i~~Lv~lL~~-~d~~vr~~A~~aL~~L~~ 428 (780)
T 2z6g_A 380 CLWTLRNLSDAATKQ-----EGMEGLLGTLVQLLGS-DDINVVTCAAGILSNLTC 428 (780)
T ss_dssp HHHHHHHHHTTCTTC-----SCCHHHHHHHHHHTTC-SCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhccchhh-----hhhhhHHHHHHHHHcC-CCHHHHHHHHHHHHHHHh
Confidence 999999999765431 1224789999999985 589999999999998865
No 37
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.88 E-value=3.9e-23 Score=160.45 Aligned_cols=73 Identities=33% Similarity=0.526 Sum_probs=68.5
Q ss_pred CCCCCcccCccccccCcCceecCCc-ccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g-~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
.++|++|+||||+++|+|||+++|| |||||.||++||.. +.+||.|++++..+ +++||+.|++.|+.|+..+.
T Consensus 17 ~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~--~~~cP~~~~~l~~~---~L~pn~~Lk~~I~~~~~~~~ 90 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS--DQTDPFNRSPLTMD---QIRPNTELKEKIQRWLAERK 90 (98)
T ss_dssp CSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT--SCBCTTTCSBCCTT---TSEECHHHHHHHHHHHHHST
T ss_pred hcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh--CCCCCCCCCCCChh---hceEcHHHHHHHHHHHHHcc
Confidence 4689999999999999999999999 99999999999975 67999999999875 89999999999999999887
No 38
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.86 E-value=1.9e-20 Score=175.49 Aligned_cols=182 Identities=16% Similarity=0.125 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHH-HhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLAT-IITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL 190 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L 190 (407)
+.+..|+..|..++.. .+|...+.+.|++|.|+. +|.+++. .+++.|+++|.+++.+++..+..+.+.| +++.|
T Consensus 55 e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~--~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g--~l~~L 129 (296)
T 1xqr_A 55 QEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAA--GLRWRAAQLIGTCSQNVAAIQEQVLGLG--ALRKL 129 (296)
T ss_dssp HHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSH--HHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCH--HHHHHHHHHHHHHHhCCHHHHHHHHHCC--CHHHH
Confidence 5678899999999885 678999999999999999 9997665 5799999999999988877888888776 69999
Q ss_pred HHHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC-CchHHHHH
Q 040073 191 MRVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW-GRNRIKAV 268 (407)
Q Consensus 191 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v 268 (407)
+.+|+++ +..++.+|+++|.+|+.........+...|+++.|+.+|+++ +..++..|+++|.+|+.. ++.+..++
T Consensus 130 l~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~---d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 130 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ---VQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS---CHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC---CHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9999964 889999999999999876554443344468899999999998 999999999999999884 66888999
Q ss_pred hcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073 269 EGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 269 ~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
+.|++++|+.+|.+. +..+++.++.+|.+|+..
T Consensus 207 ~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 207 SMGMVQQLVALVRTE-HSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp HTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHhC
Confidence 999999999999987 889999999999999986
No 39
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.85 E-value=5e-22 Score=169.71 Aligned_cols=75 Identities=35% Similarity=0.562 Sum_probs=69.3
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||.|++++... +++||+.|+++|+.|+..++
T Consensus 100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~-~~tcP~t~~~l~~~---~L~pN~~Lk~~Ie~~~~~~~ 174 (179)
T 2f42_A 100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFDPVTRSPLTQD---QLIPNLAMKEVIDAFIQENG 174 (179)
T ss_dssp CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHCT
T ss_pred ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhC-CCCCCCCcCCCChh---hCcchHHHHHHHHHHHHHCC
Confidence 45799999999999999999999999999999999999874 34799999999874 89999999999999999887
No 40
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.85 E-value=3.4e-20 Score=190.56 Aligned_cols=286 Identities=12% Similarity=0.114 Sum_probs=219.8
Q ss_pred ChhhHHHHHHHhcC-CC-hHHHHHHHHHHHHhhhCh-------------------------------------h-HHHHH
Q 040073 96 DKTQIVKILNDAKK-SP-STGRKCLRRLRSITLQSE-------------------------------------R-NRSCL 135 (407)
Q Consensus 96 ~~~~i~~ll~~L~~-~~-~~~~~al~~L~~l~~~~~-------------------------------------~-~r~~i 135 (407)
+++-+..|+..++. .+ ...+.++..|.+++...+ + ++..+
T Consensus 374 d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l 453 (778)
T 3opb_A 374 NESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYI 453 (778)
T ss_dssp CHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHH
Confidence 34446677777763 33 666667777777654211 1 67888
Q ss_pred HhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChh---HHHHHHHHHHHh
Q 040073 136 EAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQ---SRSYAIMLLKSI 212 (407)
Q Consensus 136 ~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~---~~~~a~~~L~~L 212 (407)
.++|+||.|+.++.+.+. .+++.|+++|.+|+.+.+ ++..+.+.| +++.|+.+|.+++.. .+.+|+.+|.+|
T Consensus 454 ~eaGvIp~Lv~Ll~S~s~--~~re~A~~aL~nLS~d~~-~R~~lvqqG--al~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 454 LRTELISFLKREMHNLSP--NCKQQVVRIIYNITRSKN-FIPQLAQQG--AVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp TTTTHHHHHHHHGGGSCH--HHHHHHHHHHHHHHTSGG-GHHHHHHTT--HHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCCCH--HHHHHHHHHHHHHcCCHH-HHHHHHHCC--CHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 899999999999998765 469999999999997754 677777666 699999999987544 899999999999
Q ss_pred hccCCchhhhhc--hhhhHHHHHHHcccCCCC-----------CHHHHHHHHHHHHHhCCCCch-----HHHHHhc-Cch
Q 040073 213 FEVADPFQLISV--KQEFFTEIVNVLRDHHQF-----------SQQASKAALKLLVELCPWGRN-----RIKAVEG-GGV 273 (407)
Q Consensus 213 s~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~-----------~~~~~~~A~~aL~~L~~~~~n-----~~~~v~~-G~v 273 (407)
+...+....+.. ..|+|++|+++|..+... +.--+..|+.||.||+..++| +..++++ |++
T Consensus 529 lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~ 608 (778)
T 3opb_A 529 LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608 (778)
T ss_dssp HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHH
T ss_pred HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHH
Confidence 866655443321 138899999999831000 112377899999999998743 7888995 999
Q ss_pred HHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH-HHHHhcc-----CchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 274 SVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR-AELLKHG-----AGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 274 ~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r-~~i~~~~-----g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
+.|..+|.++ +..++..|+.++.+|+.+++++ .++.... ++++.||.++...+...++.|.++|++++.. +
T Consensus 609 ~~L~~LL~s~-n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~--~ 685 (778)
T 3opb_A 609 STIENLMLDE-NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT--I 685 (778)
T ss_dssp HHHHHGGGCS-SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC--C
Confidence 9999999986 7899999999999999998875 3453321 2478899977766789999999999999753 3
Q ss_pred hHHHHHHHHh-ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 040073 348 ARVLQEMLQV-GVVSKLCLVLQVD-ASVKTKERAREILKLNARA 389 (407)
Q Consensus 348 ~~~~~~~~~~-g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~~ 389 (407)
..++..+++. ++++.|+.+++.. .++..+.++..++..+..+
T Consensus 686 ~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~ 729 (778)
T 3opb_A 686 PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV 729 (778)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence 3467788876 8999999999962 5899999999999999874
No 41
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.2e-20 Score=187.40 Aligned_cols=279 Identities=12% Similarity=0.111 Sum_probs=215.8
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH--
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-- 174 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-- 174 (407)
-...+.+.|..++ +.+..|++.|..++.+ ++.|+.+++ .|+++.|+.+++....+ .+...++.+|.||+.+.+.
T Consensus 335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~-s~~Ygal~IL~NLt~~~~~~~ 412 (778)
T 3opb_A 335 LSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMT-HCLYGLLVIMANLSTLPEEXX 412 (778)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCT-THHHHHHHHHHHTTCCCCCCC
T ss_pred HHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhcCCCcccc
Confidence 3445555666655 6689999999999886 788999987 56799999999963332 3589999999999863321
Q ss_pred ------------------------------------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 175 ------------------------------------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 175 ------------------------------------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
+++.+.+.| +++.|+.++++++..+++.|+++|.+|+...++
T Consensus 413 ~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaG--vIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~ 490 (778)
T 3opb_A 413 XXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTE--LISFLKREMHNLSPNCKQQVVRIIYNITRSKNF 490 (778)
T ss_dssp CCCC------------------CCTHHHHHHHHHHHHHHHTTTTT--HHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred hhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCc--CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence 456667666 899999999999999999999999999988777
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHH---HHHHHHHHHHHhCCCCchHHHHHh---cCchHHHHHHhhcccch------
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQ---ASKAALKLLVELCPWGRNRIKAVE---GGGVSVLVDLLLDVTER------ 286 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~---~~~~A~~aL~~L~~~~~n~~~~v~---~G~v~~Lv~lL~~~~~~------ 286 (407)
+..+.. +|++++|+.+|.++ +.. .+..|+.||.+|....+....+-. .|+|++|+++|..+++.
T Consensus 491 R~~lvq-qGal~~LL~lL~s~---~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~ 566 (778)
T 3opb_A 491 IPQLAQ-QGAVKIILEYLANK---QDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566 (778)
T ss_dssp HHHHHH-TTHHHHHHHHTTCC------CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC--
T ss_pred HHHHHH-CCCHHHHHHHHhcC---CCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccc
Confidence 777766 68899999999887 443 899999999999875554443311 38999999999832111
Q ss_pred -------hHHHHHHHHHHHHhcCH-----hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHH
Q 040073 287 -------RVCELMLNVLDLLCRCA-----EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEM 354 (407)
Q Consensus 287 -------~~~~~al~~L~~L~~~~-----~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~ 354 (407)
--+..|+.+|.||+..+ +.|..++.+.|+++.|+.+|.+.+...++.|+.++++|+..... +....
T Consensus 567 ~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~--i~~k~ 644 (778)
T 3opb_A 567 NDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLT--IAAKF 644 (778)
T ss_dssp -CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGG--TGGGT
T ss_pred ccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHH--HHHHH
Confidence 12669999999999976 34788887547999999988887889999999999999974321 11122
Q ss_pred H------HhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 355 L------QVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 355 ~------~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
. ..+.++.|+.++++ .+.++|+.|+++|.++..
T Consensus 645 ~~~~~~~~~~rL~lLV~Ll~s-~D~~~r~AAagALAnLts 683 (778)
T 3opb_A 645 FNLENPQSLRNFNILVKLLQL-SDVESQRAVAAIFANIAT 683 (778)
T ss_dssp SCCSSHHHHHHHHHHHHGGGC-SCHHHHHHHHHHHHHHHH
T ss_pred HhhcCchhhccHHHHHHHHcC-CCHHHHHHHHHHHHHhcC
Confidence 2 12358899999986 589999999999999853
No 42
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.83 E-value=3.2e-19 Score=167.12 Aligned_cols=220 Identities=15% Similarity=0.098 Sum_probs=170.7
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHH-HHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHH
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMR-VLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNV 235 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~-lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~l 235 (407)
.+..|+..|.+++.+.+ +...+.+.| +++.|+. +|++++.++++.|+++|.+++..++..+..+...|++++|+.+
T Consensus 56 ~k~~Al~~L~~lv~~~d-na~~~~~~G--~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 56 EREGALELLADLCENMD-NAADFCQLS--GMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHTSHH-HHHHHHHTT--HHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh-hHHHHHHcC--CHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 37889999999988765 445455566 5999999 9999999999999999999998776655555557899999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC-HhhHHHHHhcc
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC-AEGRAELLKHG 313 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~-~~~r~~i~~~~ 313 (407)
|+++ .+..+++.|+++|.||+.+. ++...+++.|++|.|+.+|.++ +..++..|+++|.+|+.+ ++.+..+++ .
T Consensus 133 L~~~--~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~-d~~v~~~A~~aLs~L~~~~~~~~~~vv~-~ 208 (296)
T 1xqr_A 133 LDRD--ACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKGTLCS-M 208 (296)
T ss_dssp HHHC--SCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHHHHHH-T
T ss_pred HccC--CCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCChHHHHHHHH-c
Confidence 9864 27899999999999999855 4667888999999999999986 899999999999999874 566777777 6
Q ss_pred CchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHh-----ChHHHHHHHHhcCC-CHHHHHHHHHHHHH
Q 040073 314 AGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV-----GVVSKLCLVLQVDA-SVKTKERAREILKL 385 (407)
Q Consensus 314 g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~-----g~i~~Ll~ll~~~~-~~~~k~~A~~lL~~ 385 (407)
|+++.|+.+|...+...++.|+.+|.++..... ......... ..+..-.+-++... .....++|..++..
T Consensus 209 g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~--~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~ 284 (296)
T 1xqr_A 209 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP--QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQT 284 (296)
T ss_dssp THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCH--HHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHcCCChhHHHHHHHHHHHHHhCCh--hHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHH
Confidence 899999998877789999999999999998632 223322211 11222234455332 35556666666654
No 43
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.82 E-value=6.9e-21 Score=142.21 Aligned_cols=75 Identities=48% Similarity=0.900 Sum_probs=69.5
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+.++|++|.||||+++|.|||+++|||+||+.||.+|+.. ++.+||.|++++... .+.+|..|+++|+.|...++
T Consensus 2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~-~~~~CP~C~~~~~~~---~l~~n~~l~~~i~~~~~~~~ 76 (78)
T 1t1h_A 2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA-GHKTCPKSQETLLHA---GLTPNYVLKSLIALWCESNG 76 (78)
T ss_dssp CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT-TCCBCTTTCCBCSSC---CCEECTTTHHHHHHHHHHSC
T ss_pred CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH-CcCCCCCCcCCCChh---hCccCHHHHHHHHHHHHHcC
Confidence 4678999999999999999999999999999999999975 478999999999874 89999999999999999886
No 44
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.5e-21 Score=146.34 Aligned_cols=74 Identities=26% Similarity=0.425 Sum_probs=64.6
Q ss_pred CCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcC----CCCCCcccccc---ccccCCCCCCccHHHHHHHHHH
Q 040073 5 EVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTC----KNNTCPVTKQV---LQETDLTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~----~~~~cP~~~~~---~~~~~~~~l~~n~~l~~~I~~~ 76 (407)
+.+++|.||||+++|+|||+++ |||||||.||++||..+ +..+||+++.+ +... +++||..|+++|+.|
T Consensus 3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~---~L~pn~~L~~~I~~~ 79 (94)
T 2yu4_A 3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS---DLIQDEALRRAIENH 79 (94)
T ss_dssp SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG---GEEECHHHHHHHHHH
T ss_pred CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh---hCcCCHHHHHHHHHH
Confidence 4688999999999999999996 99999999999999863 25689995554 7664 899999999999999
Q ss_pred HHhcc
Q 040073 77 CTINA 81 (407)
Q Consensus 77 ~~~~~ 81 (407)
...+.
T Consensus 80 ~~~~~ 84 (94)
T 2yu4_A 80 NKKRH 84 (94)
T ss_dssp HTTCC
T ss_pred HHHhc
Confidence 98876
No 45
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.78 E-value=8.3e-20 Score=170.44 Aligned_cols=75 Identities=33% Similarity=0.570 Sum_probs=69.1
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..++|++|+||||+++|+|||+++|||||||.||++||..+ ..+||.|+++++.. +++||+.|++.|+.|+..++
T Consensus 202 ~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~-~~~cP~~~~~~~~~---~l~~n~~l~~~i~~~~~~~~ 276 (281)
T 2c2l_A 202 KRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV-GHFNPVTRSPLTQE---QLIPNLAMKEVIDAFISENG 276 (281)
T ss_dssp CCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT-CSSCTTTCCCCCGG---GCEECHHHHHHHHHHHTTCS
T ss_pred CCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC-CCCCcCCCCCCchh---cCcccHHHHHHHHHHHHHCC
Confidence 45799999999999999999999999999999999999874 55699999999875 89999999999999999886
No 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.74 E-value=2.9e-18 Score=132.19 Aligned_cols=77 Identities=25% Similarity=0.418 Sum_probs=68.2
Q ss_pred CCCCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
...++++|.||||.++|.|||+++ |||+||+.||.+||...+...||.|++++.... .+.+|..++++|+.|...+.
T Consensus 7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~--~~~~n~~l~~~i~~~~~~~~ 84 (92)
T 3ztg_A 7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD--ALIANKFLRQAVNNFKNETG 84 (92)
T ss_dssp CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTT--SCEECHHHHHHHHHHHHHHT
T ss_pred cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCcc--ccCcCHHHHHHHHHHHHHHh
Confidence 456899999999999999999999 999999999999998655689999999973223 78999999999999998776
No 47
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.68 E-value=7.9e-18 Score=118.23 Aligned_cols=55 Identities=22% Similarity=0.386 Sum_probs=49.2
Q ss_pred cccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHH
Q 040073 9 HFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHT 68 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~ 68 (407)
.|.||||+++|+|||++ +|||+|||.+|++|+.+ +.+||+|++++..+ +++||+.
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~--~~~cP~t~~~L~~~---~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD--TGNDPITNEPLSIE---EIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH--HSBCTTTCCBCCGG---GCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh--CCCCcCCcCCCChh---hcEECcc
Confidence 58999999999999999 89999999999999986 45699999999885 8888853
No 48
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.67 E-value=1.1e-14 Score=146.24 Aligned_cols=283 Identities=19% Similarity=0.235 Sum_probs=210.9
Q ss_pred hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCC-Chh
Q 040073 97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNV-SES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~-~~~ 173 (407)
...|+.|..++++.. ++|+.|+..|+.++++ ++..+. .++++.|+..|+.+....+....++.+|.++.. +++
T Consensus 20 ~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~---y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~ 95 (651)
T 3grl_A 20 AETIQKLCDRVASSTLLDDRRNAVRALKSLSKK---YRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEE 95 (651)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT---TTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--
T ss_pred hhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH---hHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCc
Confidence 577999999998766 9999999999999875 444444 556899999999876544457778888876433 321
Q ss_pred H----------------HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc--hhhhhchhhhHHHHHHH
Q 040073 174 Y----------------LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP--FQLISVKQEFFTEIVNV 235 (407)
Q Consensus 174 ~----------------~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~l 235 (407)
+ ..+.+.+.. +.++.|+.+|++.+..+|.++..+|..|+..... ...+....++|+.||.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~d~f~~~~-~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~l 174 (651)
T 3grl_A 96 EEVEENSTRQSEDLGSQFTEIFIKQQ-ENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDL 174 (651)
T ss_dssp ------------CHHHHHHHHHHHST-HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGG
T ss_pred ccccccccccchHHHHHHHHHHHcCC-ccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHH
Confidence 1 122333333 2699999999999999999999999999877654 34455456889999999
Q ss_pred cccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh-cCchHHHHHHhhccc---chhHHHHHHHHHHHHhcCH-hhHHHHH
Q 040073 236 LRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE-GGGVSVLVDLLLDVT---ERRVCELMLNVLDLLCRCA-EGRAELL 310 (407)
Q Consensus 236 L~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~-~G~v~~Lv~lL~~~~---~~~~~~~al~~L~~L~~~~-~~r~~i~ 310 (407)
|.+. ...++..|+..|.+|+.+..+..+++. +|+++.|+.++.... ...+.+.|+.+|.+|.... .++..+.
T Consensus 175 L~d~---rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr 251 (651)
T 3grl_A 175 LADS---REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK 251 (651)
T ss_dssp GGCS---SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhCc---hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9988 889999999999999998877767665 699999999998752 2478899999999999854 5787777
Q ss_pred hccCchHHHHHHHHcCCc------hhhHH---HHHHHHHHhccCC----chHHHHHHHHhChHHHHHHHHhcCC-CHHHH
Q 040073 311 KHGAGLAVVSKKILRVSH------AASDR---AVRILCSVCKFSA----TARVLQEMLQVGVVSKLCLVLQVDA-SVKTK 376 (407)
Q Consensus 311 ~~~g~i~~Lv~~l~~~s~------~~~e~---a~~~L~~l~~~~~----~~~~~~~~~~~g~i~~Ll~ll~~~~-~~~~k 376 (407)
+ .++++.|..++....+ ....+ ++.++..++..+. ....+..+.+.|+++.|+.++.+.+ ...++
T Consensus 252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~ 330 (651)
T 3grl_A 252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL 330 (651)
T ss_dssp H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence 7 6899999985532211 12233 5666777776433 2345667788999999999998754 56677
Q ss_pred HHHHHHHHHHHh
Q 040073 377 ERAREILKLNAR 388 (407)
Q Consensus 377 ~~A~~lL~~l~~ 388 (407)
..|-..+.-+.+
T Consensus 331 ~~Al~tla~~ir 342 (651)
T 3grl_A 331 TETINTVSEVIR 342 (651)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 766666654433
No 49
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.2e-17 Score=144.46 Aligned_cols=71 Identities=17% Similarity=0.271 Sum_probs=63.4
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcc--ccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPV--TKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~--~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
...+|+||||+++|+|||+. .|||+|||.||.+||..++...||+ |++.+... ++.||..|+++|+.|..+
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~---dL~pN~~L~~lve~~k~r 251 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMR---DFVRDPIMELRCKIAKMK 251 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGG---GEEECHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchh---hCCcCHHHHHHHHHHHHH
Confidence 45679999999999999985 9999999999999998655678999 88988775 899999999999999764
No 50
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=99.63 E-value=1.7e-16 Score=164.88 Aligned_cols=75 Identities=29% Similarity=0.486 Sum_probs=69.4
Q ss_pred CCCCCCcccCccccccCcCceecCCc-ccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTG-ITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g-~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
..++|++|+|||++++|+|||++++| +||||++|++|+.. +.+||.|+++++.. +++||++||+.|++|+..+.
T Consensus 885 ~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~--~~tdP~Tr~~L~~~---~liPN~~Lk~~I~~w~~~~~ 959 (968)
T 3m62_A 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS--DSTDPFNRMPLKLE---DVTPNEELRQKILCFKKQKK 959 (968)
T ss_dssp HCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred ccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc--CCCCCCCCCCCCcc---cccccHHHHHHHHHHHHHHH
Confidence 36899999999999999999999998 79999999999975 67999999999885 89999999999999999887
Q ss_pred C
Q 040073 82 C 82 (407)
Q Consensus 82 ~ 82 (407)
.
T Consensus 960 ~ 960 (968)
T 3m62_A 960 E 960 (968)
T ss_dssp T
T ss_pred h
Confidence 3
No 51
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.61 E-value=2.6e-16 Score=128.11 Aligned_cols=71 Identities=17% Similarity=0.246 Sum_probs=62.2
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
+++++.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++.... .+.+|..++++++.|...
T Consensus 49 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~~~~n~~l~~~i~~~~p~ 119 (124)
T 3fl2_A 49 VEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA-QVFSCPACRYDLGRSY--AMQVNQPLQTVLNQLFPG 119 (124)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC--CCCCCHHHHHHHHHHSTT
T ss_pred CccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH-CcCCCCCCCccCCCCC--CCCCCHHHHHHHHHHccc
Confidence 3567899999999999999999999999999999985 3679999999987622 789999999999988643
No 52
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.58 E-value=9.1e-16 Score=128.72 Aligned_cols=70 Identities=20% Similarity=0.345 Sum_probs=62.1
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~ 78 (407)
++++|.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++..+. .+.+|..++++++.|..
T Consensus 75 l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~l~~n~~l~~lv~~~~p 144 (150)
T 1z6u_A 75 LEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA-QVFSCPACRHDLGQNY--IMIPNEILQTLLDLFFP 144 (150)
T ss_dssp HHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT-TCCBCTTTCCBCCTTC--CCCBCHHHHHHHHHHST
T ss_pred CccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh-CCCcCCCCCccCCCCC--CCCCCHHHHHHHHHHhh
Confidence 4567999999999999999999999999999999986 3678999999987643 68899999999998863
No 53
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.56 E-value=1.2e-15 Score=119.05 Aligned_cols=71 Identities=15% Similarity=0.305 Sum_probs=63.5
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+++++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|++++... .+.+|..++++++.|.....
T Consensus 19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~---~l~~n~~l~~~i~~~~~~~~ 90 (99)
T 2y43_A 19 IDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY--KTQCPTCCVTVTEP---DLKNNRILDELVKSLNFARN 90 (99)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT--CCBCTTTCCBCCGG---GCEECHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC--CCCCCCCCCcCChh---hCCcCHHHHHHHHHHHHHHH
Confidence 34568999999999999998 89999999999999974 67999999998874 78999999999999987765
No 54
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=109.59 Aligned_cols=62 Identities=26% Similarity=0.438 Sum_probs=51.7
Q ss_pred CCCCCCcccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
...+++++.||||.++|.|||+++ |||+||+.||.+|+...+...||.|++++.... .+.+|
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~--~~~~n 71 (74)
T 2yur_A 9 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD--ALSGP 71 (74)
T ss_dssp CCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT--TTTCT
T ss_pred cccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc--ccccC
Confidence 346889999999999999999999 999999999999998644579999999754322 45555
No 55
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.50 E-value=9.1e-15 Score=114.10 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=62.3
Q ss_pred CCCcccCccccccCcCcee-cCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 6 VPAHFLCPISLQLMRDPVT-VSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~-~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+.+++.||||++.|.+||+ ++|||+||+.||.+|+... ...||.|+.++..+ .+.+|..+.++++.......
T Consensus 19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~l~~~~~~~~i~~~~~~l~~ 91 (100)
T 3lrq_A 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ-RAQCPHCRAPLQLR---ELVNCRWAEEVTQQLDTLQL 91 (100)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCEECTTHHHHHHHHHHHCC
T ss_pred CCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC-cCCCCCCCCcCCHH---HhHhhHHHHHHHHHHHHHHH
Confidence 4567899999999999999 9999999999999999873 47899999999875 88899888888877766544
No 56
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.50 E-value=5.2e-16 Score=115.85 Aligned_cols=65 Identities=23% Similarity=0.368 Sum_probs=55.7
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC-----CCCCCccccccccccCCCCCCccHHHHH
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-----KNNTCPVTKQVLQETDLTSTTPNHTLRR 71 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-----~~~~cP~~~~~~~~~~~~~l~~n~~l~~ 71 (407)
..+++++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|++++... .+.+|..+++
T Consensus 7 ~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~---~l~~n~~l~~ 76 (79)
T 2egp_A 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE---HLQANQHLAN 76 (79)
T ss_dssp CCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS---GGGTCSSSCC
T ss_pred hhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh---hCCcCHHHHH
Confidence 3578899999999999999999999999999999999752 267899999998764 7788876644
No 57
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=1e-14 Score=109.27 Aligned_cols=63 Identities=17% Similarity=0.177 Sum_probs=53.6
Q ss_pred CCCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHH
Q 040073 3 EIEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRR 71 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~ 71 (407)
+.+..+++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++++.. .+.+|..+..
T Consensus 9 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~----~~~~~~~l~~ 71 (81)
T 2csy_A 9 SEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA--TPRCYICDQPTGG----IFNPAKELMA 71 (81)
T ss_dssp SSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH--CSBCSSSCCBCCS----CCEECHHHHH
T ss_pred cccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC--CCcCCCcCccccc----cCCcHHHHHH
Confidence 3456678999999999999999999999999999999975 7789999999863 6778855543
No 58
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.48 E-value=4.3e-15 Score=112.41 Aligned_cols=65 Identities=22% Similarity=0.393 Sum_probs=55.8
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC----CCCCCccccccccccCCCCCCccHHHHH
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC----KNNTCPVTKQVLQETDLTSTTPNHTLRR 71 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~----~~~~cP~~~~~~~~~~~~~l~~n~~l~~ 71 (407)
..+.+++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|++++..+ .+.+|..+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l~~ 82 (85)
T 2ecw_A 14 EMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG---NLKPNLHVAN 82 (85)
T ss_dssp CCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT---CCEECSCCCS
T ss_pred HhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH---hCCcCHHHHH
Confidence 3477889999999999999999999999999999999873 367899999998774 7788876544
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.48 E-value=7.6e-15 Score=118.10 Aligned_cols=69 Identities=16% Similarity=0.255 Sum_probs=61.3
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhcc
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTINA 81 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~~ 81 (407)
+.+++.||||.++|.|||++ +|||+||+.||.+|+. ..||.|+.++... .+.+|..++++++.+.....
T Consensus 19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~----~~CP~Cr~~~~~~---~~~~n~~l~~l~~~~~~~~~ 88 (117)
T 1jm7_B 19 LEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG----TGCPVCYTPAWIQ---DLKINRQLDSMIQLCSKLRN 88 (117)
T ss_dssp HHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT----TBCSSSCCBCSCS---SCCCCHHHHHHHHHHHHHHH
T ss_pred chhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc----CCCcCCCCcCccc---cccccHHHHHHHHHHHHHHH
Confidence 45679999999999999999 9999999999999985 6799999999764 88999999999998876543
No 60
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.47 E-value=1.8e-14 Score=114.13 Aligned_cols=71 Identities=20% Similarity=0.385 Sum_probs=59.6
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCcccccccccc-CCCCCCccHHHHHHHHHHHH
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQET-DLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~-~~~~l~~n~~l~~~I~~~~~ 78 (407)
+++++.||||.++|.|||++ +|||+||+.||.+|+.. ...||.|+..+... ++..+.+|..++++++.|..
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~ 84 (108)
T 2ckl_A 12 LNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET--SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP 84 (108)
T ss_dssp HGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS--CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred cCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh--CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence 57889999999999999998 99999999999999975 58899999987642 11146789999999887743
No 61
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.47 E-value=1.7e-14 Score=116.15 Aligned_cols=72 Identities=22% Similarity=0.439 Sum_probs=62.8
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHhc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTIN 80 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~~ 80 (407)
.++++|.||||.++|.+||+++|||+||+.||.+|+... ...||.|+.++..+ .+.+|..+++.|..+....
T Consensus 14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~l~~~i~~l~v~C 85 (118)
T 3hct_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN---QLFPDNFAKREILSLMVKC 85 (118)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG---GCEECHHHHHHHHTSEEEC
T ss_pred CCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC-CCCCCCCCCCcCHH---hcccCHHHHHHHccceeEC
Confidence 577889999999999999999999999999999999863 55899999999874 7889999998888764433
No 62
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.47 E-value=4.7e-15 Score=112.20 Aligned_cols=65 Identities=22% Similarity=0.476 Sum_probs=56.0
Q ss_pred CCCCCcccCccccccCcCceecCCcccccHHHHHHHHhc----CCCCCCccccccccccCCCCCCccHHHHH
Q 040073 4 IEVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT----CKNNTCPVTKQVLQETDLTSTTPNHTLRR 71 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~----~~~~~cP~~~~~~~~~~~~~l~~n~~l~~ 71 (407)
..+++++.||||.+.|.+|++++|||+||+.||.+|+.. .+...||.|++++..+ .+.+|+.+++
T Consensus 14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~---~~~~n~~l~~ 82 (85)
T 2ecv_A 14 VNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPE---NIRPNRHVAN 82 (85)
T ss_dssp CCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSS---SCCCSCCCCC
T ss_pred HHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHH---hcCccHHHHH
Confidence 357788999999999999999999999999999999976 3468899999998874 7888876544
No 63
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.46 E-value=5.9e-14 Score=102.55 Aligned_cols=58 Identities=24% Similarity=0.403 Sum_probs=50.9
Q ss_pred CCCCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 4 IEVPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
.++.+++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|++++..+ ++.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~ 68 (72)
T 2djb_A 10 SELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY--SNRCPKCNIVVHQT---QPLSG 68 (72)
T ss_dssp CCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH--CSSCTTTCCCCCSS---CSCCC
T ss_pred hhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc--CCcCCCcCcccCcc---ccccc
Confidence 4577889999999999999998 99999999999999975 67899999998764 55555
No 64
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.46 E-value=2.3e-14 Score=122.65 Aligned_cols=71 Identities=21% Similarity=0.381 Sum_probs=60.8
Q ss_pred CCCcccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHHHh
Q 040073 6 VPAHFLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~~ 79 (407)
+.+++.||||.+.|.|||++ +|||+||+.||.+|+.. ++..||.|+.++.... .+.+|..++++|..|...
T Consensus 51 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~--~l~~~~~l~~~i~~~~~~ 122 (165)
T 2ckl_B 51 LHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRS-GNKECPTCRKKLVSKR--SLRPDPNFDALISKIYPS 122 (165)
T ss_dssp CHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT-TCCBCTTTCCBCCSGG--GEEECHHHHHHHHHHC--
T ss_pred CCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh-CcCCCCCCCCcCCCcc--cCCcCHHHHHHHHHHHcc
Confidence 45678999999999999988 99999999999999986 4788999999985433 788999999999988553
No 65
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.45 E-value=1.6e-14 Score=115.93 Aligned_cols=71 Identities=17% Similarity=0.281 Sum_probs=59.8
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc------cCCCCCCccHHHHHHHHHHHH
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE------TDLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~------~~~~~l~~n~~l~~~I~~~~~ 78 (407)
...++|.||||.++|.+||+++|||+||+.||.+|+.. +...||.|++.+.. .. .+..|..+.+.|+.|..
T Consensus 11 ~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~~~--~~~~n~~l~~~i~~~~p 87 (115)
T 3l11_A 11 PSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK-ASLCCPFCRRRVSSWTRYHTRR--NSLVNVELWTIIQKHYP 87 (115)
T ss_dssp CCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT-TTSBCTTTCCBCHHHHHHHHHT--TCCBCHHHHHHHHHHSH
T ss_pred CCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH-CcCCCCCCCcccCccccccccc--cchhhHHHHHHHHHHCC
Confidence 34567999999999999999999999999999999975 37889999998752 11 56778999999988853
No 66
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.45 E-value=3e-14 Score=118.08 Aligned_cols=64 Identities=17% Similarity=0.366 Sum_probs=52.2
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHH
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWC 77 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~ 77 (407)
.+++.||||.+.|.|||+++|||+||+.||.+|+.. +..||.|++++... ..|..+...|..+.
T Consensus 51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~-----~~~~~~~~~i~~~~ 114 (138)
T 4ayc_A 51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR--KIECPICRKDIKSK-----TYSLVLDNCINKMV 114 (138)
T ss_dssp HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT--CSBCTTTCCBCCCE-----EECHHHHHHHHHHH
T ss_pred cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc--CCcCCCCCCcCCCC-----CCccchhHHHHHHH
Confidence 456899999999999999999999999999999974 67899999987542 24555556665554
No 67
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.45 E-value=9.9e-12 Score=124.97 Aligned_cols=285 Identities=12% Similarity=0.097 Sum_probs=209.0
Q ss_pred hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChh-----------------HHHHH-HhcCcHHHHHHHhhccCCCC
Q 040073 97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQSER-----------------NRSCL-EAAGAIEFLATIITKSDAGS 155 (407)
Q Consensus 97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~-----------------~r~~i-~~~G~i~~Lv~lL~~~~~~~ 155 (407)
..+++.|+.-|+.+ + +....+++.|.++...++. +.+.+ .+.+.|+.|+.+|+..+-
T Consensus 59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df-- 136 (651)
T 3grl_A 59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDF-- 136 (651)
T ss_dssp HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCH--
T ss_pred hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccH--
Confidence 56788999988754 3 6677789999876543321 23344 347889999999987654
Q ss_pred chHHHHHHHHHhcCCChhH-HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH
Q 040073 156 DECDEALSILYHLNVSESY-LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN 234 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~-~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~ 234 (407)
-++..++..|..|+.+... .++.|....+ +++.|+.+|++....+|-.+..+|.+|+..+...++++...|+++.|++
T Consensus 137 ~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~-gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~ 215 (651)
T 3grl_A 137 HVRWPGVKLLTSLLKQLGPQVQQIILVSPM-GVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLD 215 (651)
T ss_dssp HHHHHHHHHHHHHHHHSHHHHHHHHHHSTT-HHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHhCcc-cHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHH
Confidence 3589999999998876654 5666665432 6999999999989999999999999999998888888888899999999
Q ss_pred HcccCCC-CCHHHHHHHHHHHHHhCCCC-chHHHHHhcCchHHHHHHhhcccch-----hHHHH---HHHHHHHHhcC--
Q 040073 235 VLRDHHQ-FSQQASKAALKLLVELCPWG-RNRIKAVEGGGVSVLVDLLLDVTER-----RVCEL---MLNVLDLLCRC-- 302 (407)
Q Consensus 235 lL~~~~~-~~~~~~~~A~~aL~~L~~~~-~n~~~~v~~G~v~~Lv~lL~~~~~~-----~~~~~---al~~L~~L~~~-- 302 (407)
+++.++. ....+.+.++..|.||.... .|+..+.|.|.++.|..+|..+.+. ....+ ++.++..|...
T Consensus 216 Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~ 295 (651)
T 3grl_A 216 IITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNN 295 (651)
T ss_dssp HHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9987511 02378899999999999965 5999999999999999999754211 12233 66666766653
Q ss_pred -----HhhHHHHHhccCchHHHHHHHHcC--CchhhHHHHHHHHHHhccCCchHHHHHHHHhC---------hHHHHHHH
Q 040073 303 -----AEGRAELLKHGAGLAVVSKKILRV--SHAASDRAVRILCSVCKFSATARVLQEMLQVG---------VVSKLCLV 366 (407)
Q Consensus 303 -----~~~r~~i~~~~g~i~~Lv~~l~~~--s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g---------~i~~Ll~l 366 (407)
..++.++.. .|+++.|+++++.. ....+..|+.++..+.++++ ..+....+.. .+.-|+.+
T Consensus 296 ~~~~t~~nQ~~~~~-~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~--~~Q~~fa~~~vp~~~~~p~li~lL~~~ 372 (651)
T 3grl_A 296 PPGATSSCQKAMFQ-CGLLQQLCTILMATGVPADILTETINTVSEVIRGCQ--VNQDYFASVNAPSNPPRPAIVVLLMSM 372 (651)
T ss_dssp CHHHHHHHHHHHHH-TTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCH--HHHHHHHHCEESSSSCEEHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-CCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCH--HHHHHHhhccCCCCCCcChHHHHHHHH
Confidence 245667777 58899999987764 35678899999999998543 3455554432 23334444
Q ss_pred HhcCCCHHHHHHHHHHHHHHH
Q 040073 367 LQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 367 l~~~~~~~~k~~A~~lL~~l~ 387 (407)
+.+......|-.|...++.+-
T Consensus 373 ~~~~~~~~lR~Aa~~cl~ay~ 393 (651)
T 3grl_A 373 VNERQPFVLRCAVLYCFQCFL 393 (651)
T ss_dssp TCTTSCHHHHHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHH
Confidence 554557888888877777654
No 68
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=6.9e-14 Score=100.35 Aligned_cols=53 Identities=11% Similarity=0.277 Sum_probs=47.6
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
.+++++.||||.+.|++||+++|||+||+.||.+|+.. +...||.|++++..+
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS-SSPKCTACQESIVKD 63 (66)
T ss_dssp SCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT-SSCCCTTTCCCCCTT
T ss_pred cCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh-CcCCCCCCCcCCChh
Confidence 56788999999999999999999999999999999964 378899999988653
No 69
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.43 E-value=2.7e-14 Score=113.95 Aligned_cols=69 Identities=19% Similarity=0.408 Sum_probs=57.6
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccHHHHHHHHHHHH
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWCT 78 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~~ 78 (407)
++++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|++++... .+.+|..+.+.++.+..
T Consensus 19 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~---~~~~~~~l~~~~~~~~~ 88 (112)
T 1jm7_A 19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR---SLQESTRFSQLVEELLK 88 (112)
T ss_dssp HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTT---TCBCCCSSSHHHHHHHH
T ss_pred cCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHh---hcCccHHHHHHHHHHHH
Confidence 4578999999999999999999999999999999853 246899999998874 77888776666666543
No 70
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.39 E-value=1.3e-13 Score=114.32 Aligned_cols=71 Identities=18% Similarity=0.354 Sum_probs=56.1
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccC------CCCCCccHHHHHHHHHH
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETD------LTSTTPNHTLRRLIQAW 76 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~------~~~l~~n~~l~~~I~~~ 76 (407)
.++++|.||||.++|.|||+++|||+||+.||.+|+.. +...||.|++++..+. ...+.++..+++.|...
T Consensus 27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~-~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L 103 (141)
T 3knv_A 27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS-GPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESL 103 (141)
T ss_dssp GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG-SCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTS
T ss_pred cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc-CCCCCCCCCCcccccccccccchhhhcccHHHHHHHccc
Confidence 46788999999999999999999999999999999976 3678999998642100 00455787887777644
No 71
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.8e-13 Score=96.14 Aligned_cols=47 Identities=26% Similarity=0.502 Sum_probs=42.2
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcC-CCCCCccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC-KNNTCPVT 51 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~ 51 (407)
.+.+++.||||.+.|.+||+++|||+||+.||.+|+... +...||.|
T Consensus 16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred hCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 477889999999999999999999999999999999852 36789987
No 72
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.6e-13 Score=99.40 Aligned_cols=53 Identities=26% Similarity=0.559 Sum_probs=47.3
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~~~~~~~ 57 (407)
.+++++.||||.+.|.+||+++|||+||+.||.+|+.. .+...||.|++++..
T Consensus 16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 16 KLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred hCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 47788999999999999999999999999999999973 236789999998865
No 73
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.36 E-value=2.2e-13 Score=109.40 Aligned_cols=68 Identities=21% Similarity=0.331 Sum_probs=55.8
Q ss_pred CCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCC-ccHHHHHHHHHHH
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTT-PNHTLRRLIQAWC 77 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~-~n~~l~~~I~~~~ 77 (407)
++++|.||||.++|.|||+++|||+||+.||.+|+... ...||.|+.++... ++. ++..+.+.+..+.
T Consensus 20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~l~~~i~~l~ 88 (116)
T 1rmd_A 20 FVKSISCQICEHILADPVETSCKHLFCRICILRCLKVM-GSYCPSCRYPCFPT---DLESPVKSFLNILNSLM 88 (116)
T ss_dssp HHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHT-CSBCTTTCCBCCGG---GCBCCCHHHHHHHHHCE
T ss_pred ccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHC-cCcCCCCCCCCCHh---hccccHHHHHHHHHHhc
Confidence 44568999999999999999999999999999999863 67899999998764 444 4666666665543
No 74
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.36 E-value=2.9e-13 Score=116.30 Aligned_cols=69 Identities=23% Similarity=0.477 Sum_probs=61.1
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHHHH
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQAWC 77 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~~~ 77 (407)
.++++|.||||.++|.+||+++|||+||+.||.+|+... ...||.|+.++..+ .+.+|..+++.|..+.
T Consensus 14 ~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~~---~~~~~~~~~~~i~~l~ 82 (170)
T 3hcs_A 14 PLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA-GHKCPVDNEILLEN---QLFPDNFAKREILSLM 82 (170)
T ss_dssp CCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH-CSBCTTTCCBCCGG---GCEECHHHHHHHHTSE
T ss_pred CCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhC-CCCCCCCccCcchh---hhhhhHHHHHHHhhcc
Confidence 578899999999999999999999999999999999863 56999999999874 7889988888887653
No 75
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=7.9e-13 Score=100.54 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=51.6
Q ss_pred CCCCCcccCccccccCcC----ceecCCcccccHHHHHHHHhcC-CCCCCccccccccccCCCCCCccH
Q 040073 4 IEVPAHFLCPISLQLMRD----PVTVSTGITYDRVNIERWLFTC-KNNTCPVTKQVLQETDLTSTTPNH 67 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~-~~~~cP~~~~~~~~~~~~~l~~n~ 67 (407)
..+.+++.||||.+.|.+ |++++|||+||+.||.+|+... +...||.|++++..+.+..+..|.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i~~l~~n~ 78 (88)
T 2ct2_A 10 DALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQLTDNL 78 (88)
T ss_dssp CCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSSTTTSEECT
T ss_pred hhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhHHHHHHHH
Confidence 457788999999999999 9999999999999999999863 247899999987653222444454
No 76
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.33 E-value=5.2e-13 Score=95.41 Aligned_cols=55 Identities=16% Similarity=0.262 Sum_probs=47.5
Q ss_pred CcccCccccc-cCcCc----eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 8 AHFLCPISLQ-LMRDP----VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 8 ~~~~Cpi~~~-~~~dP----v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
+++.||||.+ .|.+| |+++|||+||+.||.+|+.+ +...||.|++++..+ ++.++
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~~---~~~~~ 61 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR-GAGNCPECGTPLRKS---NFRVQ 61 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT-TSSSCTTTCCCCSSC---CCEEE
T ss_pred CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc-CCCcCCCCCCccccc---cceee
Confidence 5789999999 99999 57899999999999999876 378899999998764 55554
No 77
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=1.6e-12 Score=90.49 Aligned_cols=47 Identities=23% Similarity=0.622 Sum_probs=41.9
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhc-CCCCCCccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT-CKNNTCPVT 51 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~-~~~~~cP~~ 51 (407)
.+.+++.||||.+.|.+||+++|||+||+.||.+|+.. .+...||.|
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 11 NLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 46788999999999999999999999999999999864 246889987
No 78
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.31 E-value=6.8e-13 Score=96.55 Aligned_cols=58 Identities=19% Similarity=0.368 Sum_probs=49.8
Q ss_pred CCCCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 4 IEVPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
....+++.||||.+.|.+| ++++|||+||+.||.+|+.. +..||.|++++..+ .+.++
T Consensus 5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~ 69 (71)
T 3ng2_A 5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK---RYHPI 69 (71)
T ss_dssp -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCCBCCCC---SCCCC
T ss_pred CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc--CCCCCCCCCccChh---heeec
Confidence 4556789999999999999 89999999999999999986 57999999998764 55554
No 79
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=1e-12 Score=95.66 Aligned_cols=51 Identities=18% Similarity=0.274 Sum_probs=45.7
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
...+++.||||++.|.+||+++|||+||+.||.+|+.. ...||.|++.+..
T Consensus 11 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 11 PSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred cCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 45667999999999999999999999999999999975 5789999998765
No 80
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=4.2e-12 Score=91.73 Aligned_cols=51 Identities=20% Similarity=0.400 Sum_probs=45.9
Q ss_pred CCCCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 4 IEVPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
...++++.||||++.|.+| ++++|||+||+.||.+|+.. +..||.|++++.
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 10 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred cCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 3567889999999999999 89999999999999999976 679999998775
No 81
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.22 E-value=9e-10 Score=97.38 Aligned_cols=188 Identities=14% Similarity=0.061 Sum_probs=149.9
Q ss_pred cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
.+.++.|+.+|.+++. .++..|+..|..+.. .. +++.|+.+|.+++..+|..|+.+|..+..
T Consensus 18 ~~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~~--~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--- 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD--- 79 (211)
T ss_dssp GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTCSCHHHHHHHHHHHHHHCC---
T ss_pred HhHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------cc--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC---
Confidence 4578999999986654 568889888876432 22 69999999999999999999999998742
Q ss_pred chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
.+.++.|+.+|+++ ++.++..|+.+|..+.. .++++.|+++|.+. +..++..|+.+|.
T Consensus 80 --------~~~~~~L~~~l~~~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~ 137 (211)
T 3ltm_A 80 --------ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAAAFALG 137 (211)
T ss_dssp --------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 35689999999988 99999999999998853 35789999999876 8899999999999
Q ss_pred HHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHH
Q 040073 298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKE 377 (407)
Q Consensus 298 ~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~ 377 (407)
.+.. ...++.|+.++.+.++..+..|+.+|..+.. ..+++.|..+++ +.++.+|+
T Consensus 138 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~-d~~~~vr~ 192 (211)
T 3ltm_A 138 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAE-TGTGFARK 192 (211)
T ss_dssp HHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHH-HCCHHHHH
T ss_pred HcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHh-CCCHHHHH
Confidence 8843 2467888887766678899999999988852 235777888887 45899999
Q ss_pred HHHHHHHHHHhhc
Q 040073 378 RAREILKLNARAW 390 (407)
Q Consensus 378 ~A~~lL~~l~~~~ 390 (407)
.|...|..+....
T Consensus 193 ~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 193 VAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHhcCCCC
Confidence 9999998876643
No 82
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=99.21 E-value=1.2e-09 Score=96.58 Aligned_cols=189 Identities=20% Similarity=0.128 Sum_probs=150.9
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
++..++.|++.|.+++ ..+..|+..|..+.. .++++.|+.+|.+.+. .++..|+.+|..+..
T Consensus 17 ~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~--~vr~~a~~aL~~~~~---- 79 (211)
T 3ltm_A 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA--WVRRAAADALGQIGD---- 79 (211)
T ss_dssp CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCH--HHHHHHHHHHHHHCC----
T ss_pred CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCH--HHHHHHHHHHHhhCC----
Confidence 4677899999998877 888899999987743 2468999999997654 568999998877541
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
.+ .++.|+..|++++..+|..|+.+|..+.. .+.++.|+.+|+++ ++.++..|+.+|
T Consensus 80 -------~~--~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL 136 (211)
T 3ltm_A 80 -------ER--AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE---DWFVRIAAAFAL 136 (211)
T ss_dssp -------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHHHHH
T ss_pred -------HH--HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC---CHHHHHHHHHHH
Confidence 22 68999999999999999999999998842 24689999999888 999999999999
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
.++.. ..+++.|+++|.+. +..++..++.+|..+.. ...++.|..++.+.++..++.|
T Consensus 137 ~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A 194 (211)
T 3ltm_A 137 GEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVA 194 (211)
T ss_dssp HHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHcCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHH
Confidence 99843 34789999999876 78999999999999843 2356778887777788999999
Q ss_pred HHHHHHHhccCC
Q 040073 335 VRILCSVCKFSA 346 (407)
Q Consensus 335 ~~~L~~l~~~~~ 346 (407)
..+|..+.....
T Consensus 195 ~~aL~~~~~~~~ 206 (211)
T 3ltm_A 195 VNYLETHKSFNH 206 (211)
T ss_dssp HHHHHC------
T ss_pred HHHHHhcCCCCC
Confidence 999998886543
No 83
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.20 E-value=1.8e-09 Score=94.66 Aligned_cols=188 Identities=20% Similarity=0.112 Sum_probs=152.8
Q ss_pred CCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073 93 PPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS 171 (407)
Q Consensus 93 ~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 171 (407)
++.+....+.+++.|.+++ ..+..|+..|..+.. .+.++.|+.+|.+.+. .++..|+.+|..+..
T Consensus 9 ~~~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~--~vr~~a~~~L~~~~~- 74 (201)
T 3ltj_A 9 HHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDA--WVRRAAADALGQIGD- 74 (201)
T ss_dssp CCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-
T ss_pred cccCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCH--HHHHHHHHHHHhhCC-
Confidence 3456788899999999888 889999999987753 2468999999986654 468889888877531
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
.. +++.|+..|.+.+..+|..|+.+|..+.. .++++.|+.+|+++ ++.++..|+
T Consensus 75 ----------~~--~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~ 128 (201)
T 3ltj_A 75 ----------ER--AVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE---DWFVRIAAA 128 (201)
T ss_dssp ----------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS---SHHHHHHHH
T ss_pred ----------HH--HHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC---CHHHHHHHH
Confidence 22 68999999999999999999999998742 24689999999888 999999999
Q ss_pred HHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhh
Q 040073 252 KLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAAS 331 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~ 331 (407)
.+|.++.. .++++.|+++|.+. +..++..|+.+|..+.. ...++.|..++.+.++..+
T Consensus 129 ~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr 186 (201)
T 3ltj_A 129 FALGEIGD----------ERAVEPLIKALKDE-DGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFAR 186 (201)
T ss_dssp HHHHHHTC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHH
T ss_pred HHHHHhCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHH
Confidence 99998853 35789999999886 78999999999998832 2356778887777778899
Q ss_pred HHHHHHHHHHh
Q 040073 332 DRAVRILCSVC 342 (407)
Q Consensus 332 e~a~~~L~~l~ 342 (407)
+.|..+|..+-
T Consensus 187 ~~A~~aL~~l~ 197 (201)
T 3ltj_A 187 KVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHHHHHH
Confidence 99998887764
No 84
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.20 E-value=1.9e-09 Score=99.69 Aligned_cols=224 Identities=12% Similarity=0.004 Sum_probs=158.7
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 177 (407)
.++.|++.|.+++ ..|..|+..|..+.. .+.++.|+.+|.+.+. .++..|+++|..+......
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~--~vR~~A~~aL~~l~~~~~~--- 87 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNY--IRRDIGAFILGQIKICKKC--- 87 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSH--HHHHHHHHHHHHSCCCTTT---
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCH--HHHHHHHHHHHHhcccccc---
Confidence 4678888888877 888899999988852 2357889999987655 4689999999887643221
Q ss_pred HhhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 178 IVINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 178 ~i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
+. . .++.|. .++++++..+|..++.+|..+...... ....+++.|+.+++++ ++.++..|+.+|.+
T Consensus 88 -~~--~--l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~-----~~~~~~~~L~~~l~d~---~~~vR~~a~~aL~~ 154 (280)
T 1oyz_A 88 -ED--N--VFNILNNMALNDKSACVRATAIESTAQRCKKNPI-----YSPKIVEQSQITAFDK---STNVRRATAFAISV 154 (280)
T ss_dssp -HH--H--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG-----GHHHHHHHHHHHTTCS---CHHHHHHHHHHHHT
T ss_pred -ch--H--HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc-----ccHHHHHHHHHHhhCC---CHHHHHHHHHHHHh
Confidence 11 1 355555 345678899999999999998643211 1235788899999888 89999999999988
Q ss_pred hCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHH
Q 040073 257 LCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVR 336 (407)
Q Consensus 257 L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~ 336 (407)
+.. .++++.|+++|.+. +..++..|+.+|..+.... ...++.|+..+.+.++..+..|+.
T Consensus 155 ~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~vR~~A~~ 214 (280)
T 1oyz_A 155 IND----------KATIPLLINLLKDP-NGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAII 214 (280)
T ss_dssp C-------------CCHHHHHHHHTCS-SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred cCC----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHHHHHHHH
Confidence 753 25789999999876 7788899999998874321 134667777666666778888888
Q ss_pred HHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 337 ILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 337 ~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
+|..+.. ..+++.|+..++.+ ..|..|...|..+.
T Consensus 215 aL~~~~~-------------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 215 GLSYRKD-------------KRVLSVLCDELKKN---TVYDDIIEAAGELG 249 (280)
T ss_dssp HHHHTTC-------------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred HHHHhCC-------------HhhHHHHHHHhcCc---cHHHHHHHHHHhcC
Confidence 8877651 24566777777632 25666666665553
No 85
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.20 E-value=3e-12 Score=91.03 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=44.4
Q ss_pred CcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 8 AHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
+++.||||.+.|.+| ++++|||+||+.||.+|+.. +..||.|++++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 568999999999998 89999999999999999986 67999999988764
No 86
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.20 E-value=1.7e-11 Score=90.30 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=46.2
Q ss_pred CCCCCcccCccccccC--cCceecC--CcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 4 IEVPAHFLCPISLQLM--RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~--~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
..+.+++.||||.+.| .|+++.+ |||+||+.||.+||.. +...||.|++++...
T Consensus 6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD-ENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS-SCSBCTTTCCBCSSC
T ss_pred cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc-CCCCCCCCCCccCCC
Confidence 4567889999999998 5677776 9999999999999975 478999999998764
No 87
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.17 E-value=1.6e-11 Score=91.02 Aligned_cols=58 Identities=21% Similarity=0.378 Sum_probs=47.8
Q ss_pred CCCCCcccCccccccCcCc---eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 4 IEVPAHFLCPISLQLMRDP---VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dP---v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
....+++.||||++.|.+| ++++|||+||+.||.+|+.. +..||.|++++... .+.+|
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~ 70 (78)
T 2ect_A 10 EHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ---NTATN 70 (78)
T ss_dssp TTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT--TCSCTTTCCCCCCS---CSCCC
T ss_pred ccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc--CCcCcCcCCccCCc---ccCCC
Confidence 3466789999999999987 45699999999999999964 67999999998764 44444
No 88
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=99.12 E-value=4.6e-09 Score=92.01 Aligned_cols=185 Identities=15% Similarity=0.072 Sum_probs=149.5
Q ss_pred CcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc
Q 040073 139 GAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 139 G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
+..+.++++|.+++. .++..|+.+|..+.. .+ .++.|+..|.+++..+|..|+.+|..+..
T Consensus 14 ~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~-----------~~--~~~~L~~~l~~~~~~vr~~a~~~L~~~~~---- 74 (201)
T 3ltj_A 14 EKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ER--AVEPLIKALKDEDAWVRRAAADALGQIGD---- 74 (201)
T ss_dssp HHHHHHHHHTTCSCH--HHHHHHHHHHHHHCC-----------GG--GHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred cchHHHHHHhcCCCH--HHHHHHHHHHHhcCC-----------hh--HHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence 457889999988776 568999998876442 12 69999999999999999999999988732
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL 298 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 298 (407)
.++++.|+.+|.+. ++.++..|+++|.++.. ..+++.|+++|.+. +..++..|+.+|..
T Consensus 75 -------~~~~~~L~~~l~d~---~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 75 -------ERAVEPLIKALKDE---DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE-DWFVRIAAAFALGE 133 (201)
T ss_dssp -------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 24689999999988 99999999999998753 34789999999876 88999999999988
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER 378 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~ 378 (407)
+.. ...++.|+.++.+.++..+..|+.+|..+. + ..+++.|..+++. .++.+|..
T Consensus 134 ~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~----~---------~~~~~~L~~~l~d-~~~~vr~~ 188 (201)
T 3ltj_A 134 IGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG----G---------ERVRAAMEKLAET-GTGFARKV 188 (201)
T ss_dssp HTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC----S---------HHHHHHHHHHHHH-CCHHHHHH
T ss_pred hCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC----c---------hhHHHHHHHHHhC-CCHHHHHH
Confidence 853 346788888777767889999999999884 2 1367788888874 58999999
Q ss_pred HHHHHHHHHh
Q 040073 379 AREILKLNAR 388 (407)
Q Consensus 379 A~~lL~~l~~ 388 (407)
|...|..+..
T Consensus 189 A~~aL~~l~~ 198 (201)
T 3ltj_A 189 AVNYLETHKS 198 (201)
T ss_dssp HHHHHHHCC-
T ss_pred HHHHHHHHHh
Confidence 9999887543
No 89
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.10 E-value=4.4e-11 Score=86.05 Aligned_cols=49 Identities=27% Similarity=0.451 Sum_probs=43.1
Q ss_pred CCcccCccccccCcCc-eecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDP-VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..+..||||.+.+.+| ++++|||+||+.||.+|+.. +..||.|++++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ--NPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH--SCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC--cCcCcCCChhhHh
Confidence 3467899999999997 78899999999999999975 6799999988754
No 90
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=3e-11 Score=87.52 Aligned_cols=50 Identities=14% Similarity=0.374 Sum_probs=45.3
Q ss_pred CCCCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+.+++.||||++.|.+ ++++|||+||+.||.+|+.. +..||.|++++..
T Consensus 11 ~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 11 QLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR--HRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC--CSSCHHHHHCTTC
T ss_pred cCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC--cCcCCCcCCcccC
Confidence 46778999999999999 99999999999999999963 7899999998765
No 91
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.08 E-value=1.6e-11 Score=84.60 Aligned_cols=46 Identities=13% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+++.||||.+.|.+|++++|||+||+.||.+| ...||.|++.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC-----CCCCCcCCcEeec
Confidence 467899999999999999999999999998872 5689999987653
No 92
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=99.07 E-value=9.3e-09 Score=94.94 Aligned_cols=224 Identities=11% Similarity=0.018 Sum_probs=161.5
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHH-hhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATI-ITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~l-L~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
+..++.+++.+.+++ ..+..|+..|..+........ ..++.|.+. +.+.+ ..++..|+++|..+...+..
T Consensus 53 ~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~------~l~~~L~~~~~~d~~--~~vr~~a~~aL~~l~~~~~~ 124 (280)
T 1oyz_A 53 QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCED------NVFNILNNMALNDKS--ACVRATAIESTAQRCKKNPI 124 (280)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHH------HHHHHHHHHHHHCSC--HHHHHHHHHHHHHHHHHCGG
T ss_pred chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccch------HHHHHHHHHHhcCCC--HHHHHHHHHHHHHHhccCCc
Confidence 456788888888777 788889999988753321111 123344322 33333 24689999999887532210
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
. ... +++.|+..|++++..+|..|+.+|..+.. .++++.|+.+++++ ++.++..|+++|
T Consensus 125 ----~-~~~--~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~---~~~vr~~a~~aL 183 (280)
T 1oyz_A 125 ----Y-SPK--IVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP---NGDVRNWAAFAI 183 (280)
T ss_dssp ----G-HHH--HHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS---SHHHHHHHHHHH
T ss_pred ----c-cHH--HHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC---CHHHHHHHHHHH
Confidence 1 112 78999999999999999999999998743 13689999999988 999999999999
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
..+.... ..+++.|+.+|.+. +..++..|+.+|..+. ....++.|+..+.+ +..+..|
T Consensus 184 ~~~~~~~--------~~~~~~L~~~l~d~-~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d--~~vr~~a 241 (280)
T 1oyz_A 184 NINKYDN--------SDIRDCFVEMLQDK-NEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK--NTVYDDI 241 (280)
T ss_dssp HHHTCCC--------HHHHHHHHHHTTCS-CHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS--SSCCHHH
T ss_pred HhhccCc--------HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcC--ccHHHHH
Confidence 9885321 24678999999886 7899999999998875 23578888887754 3477888
Q ss_pred HHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 335 VRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 335 ~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
+.+|..+.. ..+++.|..+++.+.++.....+...|+
T Consensus 242 ~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~ 278 (280)
T 1oyz_A 242 IEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278 (280)
T ss_dssp HHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred HHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence 888887752 2578899999986667777777766554
No 93
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.05 E-value=7.8e-11 Score=80.87 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=41.8
Q ss_pred CcccCccccccCcC----ceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 8 AHFLCPISLQLMRD----PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 8 ~~~~Cpi~~~~~~d----Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
+++.||||++.|.+ |++++|||+|++.||.+|+.. ...||.|++++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE--GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH--TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc--CCcCCCCCCcCC
Confidence 56889999999977 889999999999999999986 488999998653
No 94
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.05 E-value=4e-11 Score=98.34 Aligned_cols=51 Identities=20% Similarity=0.372 Sum_probs=45.6
Q ss_pred CCCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCcccccccccc
Q 040073 6 VPAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQET 58 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~ 58 (407)
.++++.||||++.|.+| |+++|||+||+.||.+|+.. ...||.|++.+...
T Consensus 4 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 4 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK 61 (133)
T ss_dssp -CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT--CSBCTTTCCBCTTT
T ss_pred CCCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh--CCCCCCCCCcCccc
Confidence 46789999999999999 99999999999999999975 66999999988753
No 95
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=1.4e-10 Score=83.68 Aligned_cols=52 Identities=23% Similarity=0.536 Sum_probs=44.2
Q ss_pred CCCCCcccCccccccCc---CceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 4 IEVPAHFLCPISLQLMR---DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~---dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+...+..||||++.|. ++++++|||+|++.||.+|+.. +.+||.|+..+..
T Consensus 9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT--NKKCPICRVDIEA 63 (69)
T ss_dssp CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH--CSBCTTTCSBSCS
T ss_pred CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc--CCCCcCcCccccC
Confidence 44667789999999884 5678999999999999999986 5679999998764
No 96
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.04 E-value=1.6e-10 Score=84.62 Aligned_cols=52 Identities=19% Similarity=0.436 Sum_probs=45.3
Q ss_pred CCCCCcccCccccccCcCceec---CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 4 IEVPAHFLCPISLQLMRDPVTV---STGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 4 ~~~p~~~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.++.++..||||++.|.+|..+ +|||+|++.||.+|+.. +.+||.|++++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~--~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 10 KELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV--RKVCPLCNMPVLQ 64 (74)
T ss_dssp CCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH--CSBCTTTCCBCSS
T ss_pred ccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc--CCcCCCcCccccc
Confidence 3567789999999999988765 99999999999999986 5689999998754
No 97
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.03 E-value=1e-10 Score=80.26 Aligned_cols=48 Identities=19% Similarity=0.481 Sum_probs=42.5
Q ss_pred CCCcccCccccccCcC---ceecC-CcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 6 VPAHFLCPISLQLMRD---PVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~d---Pv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
+.++..||||.+.|.+ +++++ |||.|++.||.+|+.. +.+||.|++++
T Consensus 2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~--~~~CP~Cr~~~ 53 (55)
T 1iym_A 2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS--HSTCPLCRLTV 53 (55)
T ss_dssp CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT--CCSCSSSCCCS
T ss_pred CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc--CCcCcCCCCEe
Confidence 4567899999999999 88887 9999999999999965 77899998765
No 98
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.02 E-value=1.2e-10 Score=88.92 Aligned_cols=50 Identities=20% Similarity=0.442 Sum_probs=44.1
Q ss_pred CCCcccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 6 VPAHFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..++..||||++.|.+ +++++|||.|++.||.+|+.. +.+||.|+.++..
T Consensus 37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK--SGTCPVCRCMFPP 89 (91)
T ss_dssp SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT--TCBCTTTCCBSSC
T ss_pred cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc--CCcCcCcCccCCC
Confidence 4567899999999988 889999999999999999974 6799999987754
No 99
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.97 E-value=9.8e-09 Score=109.81 Aligned_cols=276 Identities=13% Similarity=0.103 Sum_probs=186.5
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHH----hcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLE----AAGAIEFLATIITKSDAGSDECDEALSILYHLNVS 171 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~----~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 171 (407)
++-++.+++.+.+++ ..+..++..|..++++.+..-..-. -.+.++.|++++.+.+. .++..|+.+|..+...
T Consensus 127 p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~--~vR~~A~~aL~~~~~~ 204 (852)
T 4fdd_A 127 PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP--KIRSHAVACVNQFIIS 204 (852)
T ss_dssp TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSH--HHHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhc
Confidence 345778888888777 7788899999999876433211000 12346666666665433 5699999999887754
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAAL 251 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~ 251 (407)
..+ .+...-. ..++.+..++.+++.++|..|+.+|..++........-. -.++++.++..+++. +++++..|+
T Consensus 205 ~~~--~~~~~~~-~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~-l~~l~~~l~~~~~~~---~~~vr~~a~ 277 (852)
T 4fdd_A 205 RTQ--ALMLHID-SFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPH-MHNIVEYMLQRTQDQ---DENVALEAC 277 (852)
T ss_dssp TCH--HHHTSHH-HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGG-HHHHHHHHHHHHTCS---SHHHHHHHH
T ss_pred ccH--HHHHHHH-HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHH-HHHHHHHHHHHccCC---cHHHHHHHH
Confidence 322 2221112 278889999988999999999999999986543221111 135788888888887 899999999
Q ss_pred HHHHHhCCCCchHHHHHh--cCchHHHHHHhh----------cc-----------cchhHHHHHHHHHHHHhcCHhhHHH
Q 040073 252 KLLVELCPWGRNRIKAVE--GGGVSVLVDLLL----------DV-----------TERRVCELMLNVLDLLCRCAEGRAE 308 (407)
Q Consensus 252 ~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~----------~~-----------~~~~~~~~al~~L~~L~~~~~~r~~ 308 (407)
.++..++.....+..+.. ...+|.++..+. .. .+-.++..|..+|..++.... ..
T Consensus 278 e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~ 355 (852)
T 4fdd_A 278 EFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DE 355 (852)
T ss_dssp HHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GG
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence 999999875543332211 145667776662 11 012457788888888886432 12
Q ss_pred HHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 309 LLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 309 i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+.. ..++.+...+.+.+...++.|+.+|..++.+..+ .... .-.+.++.|+..++ +.++.+|..|++.|..+.+
T Consensus 356 ~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~--~~~~-~l~~~l~~l~~~l~-d~~~~Vr~~a~~~l~~l~~ 429 (852)
T 4fdd_A 356 LLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ--GMIP-YLPELIPHLIQCLS-DKKALVRSITCWTLSRYAH 429 (852)
T ss_dssp GHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH--HHGG-GHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHTHH
T ss_pred HHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH--HHHH-HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHH
Confidence 332 2466777766666788999999999999975432 1111 22467888888887 5699999999999988877
Q ss_pred h
Q 040073 389 A 389 (407)
Q Consensus 389 ~ 389 (407)
.
T Consensus 430 ~ 430 (852)
T 4fdd_A 430 W 430 (852)
T ss_dssp H
T ss_pred H
Confidence 4
No 100
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.96 E-value=2e-10 Score=84.30 Aligned_cols=49 Identities=16% Similarity=0.422 Sum_probs=43.4
Q ss_pred CCcccCccccccCcCc---eecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDP---VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP---v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.++..||||++.|.++ ++++|||.|++.||.+|+.. +.+||.|++++..
T Consensus 21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~--~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA--NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH--CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc--CCcCcCcCCcCCC
Confidence 4567999999999998 78899999999999999976 6789999988754
No 101
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.96 E-value=3.4e-10 Score=90.26 Aligned_cols=53 Identities=13% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCCCcccCccccccCcCce------------------ecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPV------------------TVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv------------------~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~ 57 (407)
..+.+..||||++.|.+|+ +++|||.|++.||.+|+.. .++.+||.|+..+..
T Consensus 21 ~~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred cCCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 3456679999999999886 7899999999999999963 236789999988754
No 102
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.93 E-value=5.1e-09 Score=109.22 Aligned_cols=193 Identities=13% Similarity=0.086 Sum_probs=140.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHH-HHcccCCCCCHHHHHHHHHHHHHhCCC--Cc
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIV-NVLRDHHQFSQQASKAALKLLVELCPW--GR 262 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~~A~~aL~~L~~~--~~ 262 (407)
.+.++++.|++++.+.|..|+.+|.+|+...+.++.+.. .|+|..++ .+|.+. +.+++..|+++|+||+.. .+
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~---~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN---NIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS---CHHHHHHHHHHHHHHHHHSCHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC---CHHHHHHHHHHHHHHHhhcCch
Confidence 355677889999999999999999999975554554444 56677665 567777 999999999999999974 46
Q ss_pred hHHHHHhcCchHHHHHHhhccc-------------c-------hhHHHHHHHHHHHHhcC-HhhHHHHHhccCchHHHHH
Q 040073 263 NRIKAVEGGGVSVLVDLLLDVT-------------E-------RRVCELMLNVLDLLCRC-AEGRAELLKHGAGLAVVSK 321 (407)
Q Consensus 263 n~~~~v~~G~v~~Lv~lL~~~~-------------~-------~~~~~~al~~L~~L~~~-~~~r~~i~~~~g~i~~Lv~ 321 (407)
.+..+++.|++++|..+|.... . ..+.+.++.+|++||.+ .+....+.. .++++.|+.
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l~~ 189 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRLLF 189 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHHHH
T ss_pred HHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHHHH
Confidence 7888999999999999986420 0 13556788999999974 444555655 688999999
Q ss_pred HHHcCC---chhhHHHHHHHHHHhccCCchHHHHHHHHhCh---HHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 322 KILRVS---HAASDRAVRILCSVCKFSATARVLQEMLQVGV---VSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 322 ~l~~~s---~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~---i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
.+.+.+ ......|+.+|+.++..+ .+....+.+.|. +..|+.+.. + +...+..++.+|..+.
T Consensus 190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn--~~~~~~i~~~~~~~~~~~ll~~~~-~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 190 RLISADIAPQDIYEEAISCLTTLSEDN--LKVGQAITDDQETHVYDVLLKLAT-G-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHCCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHTCCSSCHHHHHHHHHH-S-SCTTHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHhccC--HHHHHHHHhcchHHHHHHHHHHhc-C-CcHHHHHHHHHHHhHh
Confidence 886543 567888999999999753 446777776653 333333333 3 3334556666666654
No 103
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.2e-10 Score=83.74 Aligned_cols=45 Identities=22% Similarity=0.254 Sum_probs=40.5
Q ss_pred CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+++.|+||.+.+.|||+++|||+ ||+.|+.+| ..||.|++++..
T Consensus 22 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 22 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV------DKCPMCYTVITF 67 (74)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC------SBCTTTCCBCSE
T ss_pred ccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC------ccCCCcCcCccC
Confidence 356899999999999999999999 999999988 579999998764
No 104
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.86 E-value=1.2e-08 Score=106.38 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=139.9
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHH-HhhccCCCCchHHHHHHHHHhcCCCh-h
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLAT-IITKSDAGSDECDEALSILYHLNVSE-S 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~-lL~~~~~~~~~~~~a~~~L~~L~~~~-~ 173 (407)
+..|.++++.|++++ ..|..|+.+|.+++. ++.+|..+...|+|..++. +|.+.+. .++++|+++|.||+.+. .
T Consensus 33 ~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~--~Vr~~A~gaLrnL~~~~g~ 109 (684)
T 4gmo_A 33 EDKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNI--DSRAAGWEILKVLAQEEEA 109 (684)
T ss_dssp HHTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCH--HHHHHHHHHHHHHHHHSCH
T ss_pred hhhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCH--HHHHHHHHHHHHHHhhcCc
Confidence 345778999999888 999999999999996 5899999999998887654 5665544 57999999999998643 3
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCC---------------------hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGN---------------------YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEI 232 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~---------------------~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~L 232 (407)
+....+...| +++.|..+|++.. .+..++++.+|.+|+...+.........|.++.|
T Consensus 110 d~~~~l~~~~--il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 110 DFCVHLYRLD--VLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRL 187 (684)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHH
T ss_pred hHHHHHHHcC--hHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHH
Confidence 3445555555 7999998886411 1234577888999987665544333345789999
Q ss_pred HHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHh--hcccchhHHHHHHHHHHHHh
Q 040073 233 VNVLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLL--LDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 233 v~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL--~~~~~~~~~~~al~~L~~L~ 300 (407)
+.+|.+.+....+++..|+.+|+.|+.... ....+.+.|....+..++ ... +...+..++++|.++.
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF 257 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence 998864322357899999999999998544 455555655433222222 222 3455677889998874
No 105
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.86 E-value=5.1e-08 Score=104.25 Aligned_cols=271 Identities=11% Similarity=0.077 Sum_probs=178.6
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
++.++..+.+++ ..+..+++.|..++...+..-.... .+.++.++.++.+.++ .++..|+..+..++.... .++.
T Consensus 217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l-~~l~~~l~~~~~~~~~--~vr~~a~e~l~~l~~~~~-~~~~ 292 (852)
T 4fdd_A 217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM-HNIVEYMLQRTQDQDE--NVALEACEFWLTLAEQPI-CKDV 292 (852)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH-HHHHHHHHHHHTCSSH--HHHHHHHHHHHHHTTSTT-HHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH-HHHHHHHHHHccCCcH--HHHHHHHHHHHHHhcchh-HHHH
Confidence 444555555555 7888999999999886554311111 2467888888876544 468999999998886542 2333
Q ss_pred hhccchhhHHHHHHHH-----------hc-----------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc
Q 040073 179 VINNGEEFLESLMRVL-----------KC-----------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL 236 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL 236 (407)
+...-...++.++..+ .. .+..+|..|+.+|..++..... .+. ..+++.|..++
T Consensus 293 ~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~--~~l~~~l~~~l 368 (852)
T 4fdd_A 293 LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL--PHILPLLKELL 368 (852)
T ss_dssp HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH--HHH--HHHHHHHHHHh
Confidence 3221002566666666 22 2334688999999999865331 122 25788888888
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhh--HHHHHhccC
Q 040073 237 RDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEG--RAELLKHGA 314 (407)
Q Consensus 237 ~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~--r~~i~~~~g 314 (407)
++. +...++.|+.+|.+++........-.-.++++.|+..|.+. +..++..++++|..++..-.. ..... ..
T Consensus 369 ~~~---~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~--~~ 442 (852)
T 4fdd_A 369 FHH---EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYL--KP 442 (852)
T ss_dssp TCS---SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTH--HH
T ss_pred cCC---CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHH--HH
Confidence 887 89999999999999998554322112246789999999876 789999999999999863211 11111 23
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.++.+++.+.+.++..++.|+.+|.+++...+.. .... -.+.++.|+.+++.. ..+....+...+..+..
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~-l~~~--l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTE-LVPY--LAYILDTLVFAFSKY-QHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGG-GGGG--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHh-hHhH--HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHH
Confidence 5677888776677899999999999999654331 1111 136778888888754 55555556666665554
No 106
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.83 E-value=5.2e-10 Score=85.89 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=50.4
Q ss_pred CCcccCccccccCcCceec---CCcccccHHHHHHHHhcC---C---CCCCcc--cccc--ccccCCCCCCccHHHHHHH
Q 040073 7 PAHFLCPISLQLMRDPVTV---STGITYDRVNIERWLFTC---K---NNTCPV--TKQV--LQETDLTSTTPNHTLRRLI 73 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~---~~g~t~~r~~i~~~~~~~---~---~~~cP~--~~~~--~~~~~~~~l~~n~~l~~~I 73 (407)
.+.|.||||.+.+.+|+++ +|||+||+.|+.+||... | ...||. |+.. +..+ .+.+....+..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~----~i~~ll~~~~~ 78 (94)
T 1wim_A 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQEN----EIECMVAAEIM 78 (94)
T ss_dssp CSBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHH----HHHHHSCHHHH
T ss_pred CCCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHH----HHHHHCCHHHH
Confidence 4678999999999999876 699999999999999741 2 357999 9887 5542 22233235666
Q ss_pred HHHHHh
Q 040073 74 QAWCTI 79 (407)
Q Consensus 74 ~~~~~~ 79 (407)
+.|.+.
T Consensus 79 ~ky~~~ 84 (94)
T 1wim_A 79 QRYKKL 84 (94)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666553
No 107
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.83 E-value=4.7e-08 Score=96.24 Aligned_cols=280 Identities=11% Similarity=0.107 Sum_probs=183.2
Q ss_pred hhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh
Q 040073 97 KTQIVKILNDAKKS--P-STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSE 172 (407)
Q Consensus 97 ~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~ 172 (407)
+.-++.+++.+.++ + ..+..|+..|..++.+. +..-.... ...++.++.+|.+...+..++..|+.++.++...-
T Consensus 127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~ 205 (462)
T 1ibr_B 127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT 205 (462)
T ss_dssp TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34577788888776 6 77889999999998753 21100001 23678888888876322356899999998765321
Q ss_pred hHHH--hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHH
Q 040073 173 SYLK--SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKA 249 (407)
Q Consensus 173 ~~~~--~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~ 249 (407)
.+.. .... . ..++.+...+.+++.++|..++.+|..++......- .... .++++.++..+++. +++++..
T Consensus 206 ~~~~~~~~~~--~-~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~---~~~v~~~ 278 (462)
T 1ibr_B 206 KANFDKESER--H-FIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVALQ 278 (462)
T ss_dssp HHHHTSHHHH--H-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT-TTHHHHHHHHHHCS---SHHHHHH
T ss_pred HHhhhhhHHH--H-HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCC---chHHHHH
Confidence 1111 1111 1 146666777777899999999999999986543211 1111 16788888888877 8999999
Q ss_pred HHHHHHHhCCCCc------------------hHHHHHh---cCchHHHHHHhhcc------cchhHHHHHHHHHHHHhcC
Q 040073 250 ALKLLVELCPWGR------------------NRIKAVE---GGGVSVLVDLLLDV------TERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 250 A~~aL~~L~~~~~------------------n~~~~v~---~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~L~~~ 302 (407)
|+.++..++.... ....+++ ...+|.+++.|.+. .+..++..|..+|..|+..
T Consensus 279 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~ 358 (462)
T 1ibr_B 279 GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATC 358 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHh
Confidence 9999888875320 0011111 23567777777542 1236788889999988763
Q ss_pred HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHH
Q 040073 303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREI 382 (407)
Q Consensus 303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~l 382 (407)
-. ..+.. ..++.+...+.+.+...++.|+.+|..++.+...+..... + ...++.|+..|+ +..+.+|..|++.
T Consensus 359 ~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l-~~~~~~l~~~l~-d~~~~Vr~~a~~~ 431 (462)
T 1ibr_B 359 CE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-V-IQAMPTLIELMK-DPSVVVRDTAAWT 431 (462)
T ss_dssp TT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-T-TTHHHHHHHGGG-CSCHHHHHHHHHH
T ss_pred cc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-H-HHHHHHHHHHhc-CCCHHHHHHHHHH
Confidence 32 12332 3456666655555678899999999999975431111111 1 468899999998 5589999999999
Q ss_pred HHHHHhhcc
Q 040073 383 LKLNARAWR 391 (407)
Q Consensus 383 L~~l~~~~~ 391 (407)
|..+.+...
T Consensus 432 l~~~~~~~~ 440 (462)
T 1ibr_B 432 VGRICELLP 440 (462)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHhcc
Confidence 999888643
No 108
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.82 E-value=2e-07 Score=94.72 Aligned_cols=255 Identities=13% Similarity=0.121 Sum_probs=164.9
Q ss_pred cCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhh
Q 040073 108 KKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEF 186 (407)
Q Consensus 108 ~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~ 186 (407)
..++ ..|..|+..|..++...+.. ......+|.|..++.+.+. .++..|+.+|..++..... ..... ..
T Consensus 174 ~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~--~~~~~---~~ 243 (588)
T 1b3u_A 174 SDDTPMVRRAAASKLGEFAKVLELD---NVKSEIIPMFSNLASDEQD--SVRLLAVEACVNIAQLLPQ--EDLEA---LV 243 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHTSCHH---HHHHTHHHHHHHHHTCSCH--HHHTTHHHHHHHHHHHSCH--HHHHH---HT
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcHH---hHHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCH--HHHHH---HH
Confidence 4445 78888999999887653221 1234678888888876654 4688888888776632211 11221 26
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NR 264 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~ 264 (407)
++.+..++++.+..+|..++.+|..++...... .. ...+++.++.++++. +++++..|+.+|..++..-. .+
T Consensus 244 ~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~-~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~~~ 317 (588)
T 1b3u_A 244 MPTLRQAAEDKSWRVRYMVADKFTELQKAVGPE--IT-KTDLVPAFQNLMKDC---EAEVRAAASHKVKEFCENLSADCR 317 (588)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHH--HH-HHTHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHTSCTTTH
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcc--cc-hhHHHHHHHHHhCCC---cHHHHHHHHHHHHHHHHHhChhhh
Confidence 888889998889999999999999997643221 11 135789999999988 99999999999999876432 22
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
....-...+|.+..++.+. +..++..++.+|..++..- +...... ..+|.+...+.+.++..+..++.+|..++..
T Consensus 318 ~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~~~-~~~~~~~--~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~ 393 (588)
T 1b3u_A 318 ENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSPIL-GKDNTIE--HLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393 (588)
T ss_dssp HHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHHHH-CHHHHHH--HTHHHHHHHHTCSCHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh-hHhHHHH--HHHHHHHHHhCCCchHHHHHHHHHHHHHHHh
Confidence 2123345778888888775 7788888888888887532 1222222 3567777766655667777777777776654
Q ss_pred CCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 345 SATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 345 ~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.+... .....++.|..++. +.+.+.|..+...|..+.+
T Consensus 394 ~~~~~-----~~~~~lp~l~~~~~-d~~~~vr~~~~~~l~~l~~ 431 (588)
T 1b3u_A 394 IGIRQ-----LSQSLLPAIVELAE-DAKWRVRLAIIEYMPLLAG 431 (588)
T ss_dssp SCHHH-----HHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHH
T ss_pred cCHHH-----HHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHHH
Confidence 32211 11234455555544 3355555555555555544
No 109
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.81 E-value=1.9e-09 Score=102.54 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=43.6
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
...||||.+.+.+||+++|||+||+.||.+|+.. +...||.|++++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~-~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES-EGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH-TCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc-CCCCCCCCCCccCC
Confidence 3799999999999999999999999999999975 37899999998765
No 110
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.81 E-value=8.5e-10 Score=90.32 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=48.0
Q ss_pred CCcccCccccccCcCc-------eecCCcccccHHHHHHHHhcCCCCCCccccccccccCCCCCCcc
Q 040073 7 PAHFLCPISLQLMRDP-------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPN 66 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP-------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n 66 (407)
++++.||||++.|.+| |+++|||+||..||.+|+.. +.+||.|+.++..+ ++.++
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~---~~~~~ 131 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN--ANTCPTCRKKINHK---RYHPI 131 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH--CSBCTTTCCBCCGG---GEEEE
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc--CCCCCCCCCcCChh---cceee
Confidence 5678999999999998 89999999999999999986 67999999998774 55554
No 111
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.8e-09 Score=79.06 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=39.4
Q ss_pred CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+++.||||++.+.+||+++|||+ ||+.|+.+ ...||.|++++..
T Consensus 23 ~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 23 QEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA------VDKCPMCYTVITF 68 (75)
T ss_dssp HHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH------CSBCTTTCCBCCC
T ss_pred CCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC------CCCCccCCceecC
Confidence 456799999999999999999999 99999964 3579999998765
No 112
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.74 E-value=4.9e-09 Score=74.14 Aligned_cols=51 Identities=24% Similarity=0.217 Sum_probs=43.8
Q ss_pred CCCCcccCccccccCcCceec--CCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 5 EVPAHFLCPISLQLMRDPVTV--STGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 5 ~~p~~~~Cpi~~~~~~dPv~~--~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.-+++..|+||++-++|+|.+ +|||. ||+.|+.+|+.. +..||.|++++..
T Consensus 4 ~~~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp -CGGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CCCCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 345667999999999999987 99999 899999999974 6789999998753
No 113
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=5.7e-09 Score=77.58 Aligned_cols=48 Identities=21% Similarity=0.340 Sum_probs=40.1
Q ss_pred CcccCccccccCcC--------------ceec-CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRD--------------PVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~d--------------Pv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
++-.|+||++.|.+ ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ--NNRCPLCQQDWVV 76 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT--CCBCTTTCCBCCE
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh--CCCCCCcCCCcch
Confidence 45679999999988 4555 59999999999999975 6799999987643
No 114
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.70 E-value=2.6e-06 Score=86.37 Aligned_cols=266 Identities=14% Similarity=0.120 Sum_probs=146.8
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
..+..++..+.+++ ..|..|+..|..++..-...+ .....+|.|...+ ++...++..++.+|..+...-.. .
T Consensus 10 ~~i~~l~~~l~s~~~~~R~~A~~~l~~i~~~~~~~~---~~~~l~~~L~~~~---d~~~~vr~~~~~~L~~~~~~~~~-~ 82 (588)
T 1b3u_A 10 YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVER---TRSELLPFLTDTI---YDEDEVLLALAEQLGTFTTLVGG-P 82 (588)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHTHHHHHHHSCHHH---HHHTHHHHHHHTC---CCCHHHHHHHHHHHTTCSGGGTS-G
T ss_pred CcHHHHHHHhhcccHHHHHHHHHhHHHHHHHhCHHH---HHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHhccCc-H
Confidence 44778888888887 778888888887765311111 1123455555443 12224577777777766532111 1
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc--------------------------------
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV-------------------------------- 224 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-------------------------------- 224 (407)
... . ..++.|..++.+++..+|..|+.+|.+++....... +..
T Consensus 83 ~~~---~-~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~~-~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~ 157 (588)
T 1b3u_A 83 EYV---H-CLLPPLESLATVEETVVRDKAVESLRAISHEHSPSD-LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV 157 (588)
T ss_dssp GGG---G-GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHHH-HHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred HHH---H-HHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 111 1 156677676667778888888888888765432110 000
Q ss_pred ----hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHh
Q 040073 225 ----KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLC 300 (407)
Q Consensus 225 ----~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~ 300 (407)
...+++.|..+++++ ++.++..|+.+|..++..-... ......+|.+..++.+. +..++..|+.+|..++
T Consensus 158 ~~~~~~~l~~~l~~l~~d~---~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~ 231 (588)
T 1b3u_A 158 SSAVKAELRQYFRNLCSDD---TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDE-QDSVRLLAVEACVNIA 231 (588)
T ss_dssp CHHHHHHHHHHHHHHHTCS---CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCS-CHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHH
Confidence 012334444444444 5666666666666655432221 22334556666555554 5566666666666665
Q ss_pred cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHH
Q 040073 301 RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAR 380 (407)
Q Consensus 301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~ 380 (407)
..-. ...... ..+|.+..++.+.+...+..|+.+|..++...+. +......++.++.+++ +.++.+|+.|+
T Consensus 232 ~~~~-~~~~~~--~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----~~~~~~l~~~l~~~l~-d~~~~vr~~a~ 302 (588)
T 1b3u_A 232 QLLP-QEDLEA--LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-----EITKTDLVPAFQNLMK-DCEAEVRAAAS 302 (588)
T ss_dssp HHSC-HHHHHH--HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-----HHHHHTHHHHHHHHHT-CSSHHHHHHHH
T ss_pred HhCC-HHHHHH--HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-----ccchhHHHHHHHHHhC-CCcHHHHHHHH
Confidence 4221 112222 2455555544444456666666666666643222 1223456777777776 45778888888
Q ss_pred HHHHHHHhhc
Q 040073 381 EILKLNARAW 390 (407)
Q Consensus 381 ~lL~~l~~~~ 390 (407)
..|..+....
T Consensus 303 ~~l~~~~~~~ 312 (588)
T 1b3u_A 303 HKVKEFCENL 312 (588)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHHHh
Confidence 8777776653
No 115
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.67 E-value=6.7e-07 Score=91.64 Aligned_cols=264 Identities=16% Similarity=0.111 Sum_probs=175.0
Q ss_pred HHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHh
Q 040073 101 VKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIV 179 (407)
Q Consensus 101 ~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i 179 (407)
..+.+.+.+++ ..|..|+..|..+. .++.... .++.+.++|.+.+. .++..|+.++..+....++ .+
T Consensus 89 n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~--~VRk~A~~al~~i~~~~p~---~~ 156 (591)
T 2vgl_B 89 NSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDP--YVRKTAAVCVAKLHDINAQ---MV 156 (591)
T ss_dssp HHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCH--HHHHHHHHHHHHHHHSSCC---CH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCCh--HHHHHHHHHHHHHHhhChh---hc
Confidence 34445566666 66777777777764 2333322 35678888876554 5699999999987754332 23
Q ss_pred hccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 180 INNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
...+ .++.|..+|.+.++.++.+|+.+|..++.............+.+..|+..+.+. ++-.+...+++|..++.
T Consensus 157 ~~~~--~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~---~~~~q~~il~~l~~l~~ 231 (591)
T 2vgl_B 157 EDQG--FLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC---TEWGQIFILDCLSNYNP 231 (591)
T ss_dssp HHHH--HHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC---CHHHHHHHHHHHHTSCC
T ss_pred cccc--HHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC---CchHHHHHHHHHHHhCC
Confidence 3233 799999999999999999999999999876543312222346688888888877 88888888999988875
Q ss_pred CCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc----CHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 260 WGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR----CAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 260 ~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~----~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
.++.. ....++.+..+|.+. +..++..|+.++..+.. +++....+.. ...+.|+. +.+.++..+..|+
T Consensus 232 ~~~~~----~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~--~~~~~L~~-L~~~d~~vr~~aL 303 (591)
T 2vgl_B 232 KDDRE----AQSICERVTPRLSHA-NSAVVLSAVKVLMKFLELLPKDSDYYNMLLK--KLAPPLVT-LLSGEPEVQYVAL 303 (591)
T ss_dssp CSHHH----HHHHHHHHTTCSCSS-TTHHHHHHHHHHHHSCCSCCBTTBSHHHHHH--HTHHHHHH-HTTSCHHHHHHHH
T ss_pred CChHH----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHhhccCCCHHHHHHHHH--HHHHHHHH-HhcCCccHHHHHH
Confidence 43311 124577777777775 78899999999999874 3344444433 24567775 4455677788888
Q ss_pred HHHHHHhccCCc----------------hHHHHHHHH-------h----ChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 336 RILCSVCKFSAT----------------ARVLQEMLQ-------V----GVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 336 ~~L~~l~~~~~~----------------~~~~~~~~~-------~----g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
..|..+....++ ..++.++.+ . ..++.|..+++ +.+...|+.+...+..++.
T Consensus 304 ~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~-~~d~~~r~~~v~aI~~la~ 382 (591)
T 2vgl_B 304 RNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYAT-EVDVDFVRKAVRAIGRCAI 382 (591)
T ss_dssp HHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTT-SSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence 888877753221 123333332 1 24555666665 4578888888888877776
Q ss_pred hc
Q 040073 389 AW 390 (407)
Q Consensus 389 ~~ 390 (407)
.+
T Consensus 383 ~~ 384 (591)
T 2vgl_B 383 KV 384 (591)
T ss_dssp TC
T ss_pred hC
Confidence 43
No 116
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.66 E-value=9.8e-09 Score=72.30 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=42.5
Q ss_pred CcccCccccccCcCceec--CCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTV--STGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~--~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.+..|+||++-++|++++ +|||. ||+.|+.+|+.. +..||.|++++..
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 456899999999999988 99999 999999999965 5789999998754
No 117
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.56 E-value=4e-08 Score=76.66 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=39.2
Q ss_pred cccCccccccCcCc------------------eecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 9 HFLCPISLQLMRDP------------------VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 9 ~~~Cpi~~~~~~dP------------------v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
+-.|+||++.|.+| +.++|||.|.+.||.+|+.. +.+||.|++++
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~--~~~CP~Cr~~~ 99 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 99 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT--CSBCSSSCSBC
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc--CCcCcCCCCcc
Confidence 45799999999987 45789999999999999975 78999999875
No 118
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.55 E-value=1.2e-06 Score=89.82 Aligned_cols=261 Identities=13% Similarity=0.108 Sum_probs=172.4
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
..+..+++.+.+++ ..+.-+.-.+..+++.+++.. .-++..+.+-|.+.+. .++..|+.+|+++.. .
T Consensus 49 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~n~--~ir~~AL~~L~~i~~-----~ 116 (591)
T 2vgl_B 49 SLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDPNP--LIRALAVRTMGCIRV-----D 116 (591)
T ss_dssp GGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSSSH--HHHHHHHHHHHTCCS-----G
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCCCH--HHHHHHHHHHHcCCh-----H
Confidence 45677787777776 666666666777766555432 1124455555554443 458888888888752 1
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
++. . . .++.+..+|.+.++.+|..|+.++..+....+. .....++++.|..+|.+. ++.++..|+.+|..
T Consensus 117 ~~~-~-~--l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~---d~~V~~~A~~aL~~ 186 (591)
T 2vgl_B 117 KIT-E-Y--LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS---NPMVVANAVAALSE 186 (591)
T ss_dssp GGH-H-H--HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS---CHHHHHHHHHHHHH
T ss_pred HHH-H-H--HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC---ChhHHHHHHHHHHH
Confidence 222 2 1 577888999999999999999999999875443 223357899999999988 99999999999999
Q ss_pred hCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 257 LCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 257 L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
++...... ..-...+.++.|+..+.+. ++-.+...+.+|..++..++.- . ...++.+...+.+.+......|+
T Consensus 187 i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~---~--~~~l~~l~~~l~~~~~~V~~ea~ 260 (591)
T 2vgl_B 187 ISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE---A--QSICERVTPRLSHANSAVVLSAV 260 (591)
T ss_dssp HTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH---H--HHHHHHHTTCSCSSTTHHHHHHH
T ss_pred HHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH---H--HHHHHHHHHHHcCCChHHHHHHH
Confidence 99855422 1111224577778777765 6666677777777776533211 1 12355565555555678888899
Q ss_pred HHHHHHhccC-CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 336 RILCSVCKFS-ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 336 ~~L~~l~~~~-~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.++..+.... .+.+....+. ..+.+.|+.++. .++.+|..|...|..+...
T Consensus 261 ~~i~~l~~~~~~~~~~~~~~~-~~~~~~L~~L~~--~d~~vr~~aL~~l~~i~~~ 312 (591)
T 2vgl_B 261 KVLMKFLELLPKDSDYYNMLL-KKLAPPLVTLLS--GEPEVQYVALRNINLIVQK 312 (591)
T ss_dssp HHHHHSCCSCCBTTBSHHHHH-HHTHHHHHHHTT--SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccCCCHHHHHHHH-HHHHHHHHHHhc--CCccHHHHHHHHHHHHHHh
Confidence 9999887421 1111233332 245677776553 4789999999988877764
No 119
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.54 E-value=1.2e-08 Score=75.26 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=39.9
Q ss_pred CCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.++..|+||.+.+.|||.++|||. ||+.|+.+|+ .||.|++++..
T Consensus 16 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~------~CP~Cr~~i~~ 61 (79)
T 2yho_A 16 KEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ------SCPVCRSRVEH 61 (79)
T ss_dssp HHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS------BCTTTCCBCCE
T ss_pred CCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC------cCCCCCchhhC
Confidence 456789999999999999999999 9999998763 79999998764
No 120
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.47 E-value=1.6e-05 Score=84.62 Aligned_cols=275 Identities=13% Similarity=0.136 Sum_probs=178.8
Q ss_pred hhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhC-hhHHHHHHh--cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC
Q 040073 98 TQIVKILNDAKKS--P-STGRKCLRRLRSITLQS-ERNRSCLEA--AGAIEFLATIITKSDAGSDECDEALSILYHLNVS 171 (407)
Q Consensus 98 ~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~-~~~r~~i~~--~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~ 171 (407)
.-++.+++.+.++ + ..+..++..|..++... ++ .+.. ...++.+.+.+.+.+.+..++..|+.+|..+...
T Consensus 128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~ 204 (876)
T 1qgr_A 128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF 204 (876)
T ss_dssp THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 4567777777776 6 77888999999998753 21 1211 3456777777776532234688899999876532
Q ss_pred hhHH--HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073 172 ESYL--KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 172 ~~~~--~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 248 (407)
-... ..... .. .++.+...+.+.+.+++..++.+|..+........ .... ..+++.++..+.+. +++++.
T Consensus 205 ~~~~~~~~~~~-~~--il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~~l~~~~~~~~~~~---~~~v~~ 277 (876)
T 1qgr_A 205 TKANFDKESER-HF--IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG-PALFAITIEAMKSD---IDEVAL 277 (876)
T ss_dssp CHHHHTSHHHH-HH--HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT-TTHHHHHHHHHTCS---SHHHHH
T ss_pred HHHHHHhHHHH-HH--HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHhcCC---chHHHH
Confidence 1111 11111 11 57777777877889999999999999886543221 1111 25778888877776 889999
Q ss_pred HHHHHHHHhCCCCc---------------------hH-HHHHhcCchHHHHHHhhcc------cchhHHHHHHHHHHHHh
Q 040073 249 AALKLLVELCPWGR---------------------NR-IKAVEGGGVSVLVDLLLDV------TERRVCELMLNVLDLLC 300 (407)
Q Consensus 249 ~A~~aL~~L~~~~~---------------------n~-~~~v~~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~L~ 300 (407)
.|+.++.+++.... +. ...+ ...+|.+++.|... .+..++..|..+|..++
T Consensus 278 ~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~ 356 (876)
T 1qgr_A 278 QGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA 356 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHH
Confidence 99999888875310 00 0111 23577788887532 13467788888888887
Q ss_pred cCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHH
Q 040073 301 RCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAR 380 (407)
Q Consensus 301 ~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~ 380 (407)
..-. ..++. ..++.+...+.+.+...++.|+.+|..++.....+... .. -...++.|+..|. +..+.+|..|.
T Consensus 357 ~~~~--~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~-~~-~~~~l~~l~~~l~-d~~~~vr~~a~ 429 (876)
T 1qgr_A 357 TCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PL-VIQAMPTLIELMK-DPSVVVRDTAA 429 (876)
T ss_dssp HHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HH-HHHHHHHHHHHHT-CSSHHHHHHHH
T ss_pred HHCc--HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHH-HH-HHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 6332 12222 24555555554556788999999999999765422122 21 2357888999887 56899999999
Q ss_pred HHHHHHHhhc
Q 040073 381 EILKLNARAW 390 (407)
Q Consensus 381 ~lL~~l~~~~ 390 (407)
+.|..+.+..
T Consensus 430 ~~l~~~~~~~ 439 (876)
T 1qgr_A 430 WTVGRICELL 439 (876)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999888764
No 121
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.40 E-value=2.5e-05 Score=68.45 Aligned_cols=226 Identities=12% Similarity=0.105 Sum_probs=162.1
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCC--hhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVS--ESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~--~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
.+..|..+|...++ .++.+|+.+|..+-.. +. .+..+.+. .++.++.++++.+..+..+|..+|..|....+
T Consensus 34 ~l~~L~~LL~dkD~--~vk~raL~~LeellK~~~~~-l~~~~~e~---~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp 107 (265)
T 3b2a_A 34 ALFLILELAGEDDE--TTRLRAFVALGEILKRADSD-LRMMVLER---HLDVFINALSQENEKVTIKALRALGYLVKDVP 107 (265)
T ss_dssp HHHHHHHHTTSSCH--HHHHHHHHHHHHHHHHSCHH-HHHHHHHH---HHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHhccch--HHHHHHHHHHHHHHHhcccc-ccHHHHHH---HHHHHHHHHhccchhHHHHHHHHHHHHHcCCC
Confidence 47788889976655 5699999999987643 32 23334443 69999999999999999999999999987655
Q ss_pred chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
-...-.. .++.+|.+++.++ ++-....|+..|..|......+. .+..+.+++.+. +..++..++.+|.
T Consensus 108 L~~~~y~--Kl~~aL~dlik~~---~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Sk-d~~vK~agl~~L~ 175 (265)
T 3b2a_A 108 MGSKTFL--KAAKTLVSLLESP---DDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSP-DLYTKVAGFCLFL 175 (265)
T ss_dssp BCHHHHH--HHHHHHHHHTTSC---CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCS-SHHHHHHHHHHHH
T ss_pred CCHHHHH--HHHHHHHHHhcCC---CchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCC-ChhHHHHHHHHHH
Confidence 4433333 3678899999987 99999999999999944443433 467788888665 8999999999999
Q ss_pred HHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHh-cCCCHHHH
Q 040073 298 LLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQ-VDASVKTK 376 (407)
Q Consensus 298 ~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~-~~~~~~~k 376 (407)
+++...+...-+-.--.+|+-+ +.+.++...+.|+.+|..+.+..--+++..+. -.+...+.=|- -.+.|..+
T Consensus 176 eia~~S~D~~i~~~I~~eI~el---L~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~~~ 249 (265)
T 3b2a_A 176 NMLNSSADSGHLTLILDEIPSL---LQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPIIR 249 (265)
T ss_dssp HHGGGCSSCCCGGGTTTTHHHH---HTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHHHH
T ss_pred HhhcccCCHHHHHHHHHHHHHH---HcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChhHH
Confidence 9998443222111112345655 34557889999999999999876443344442 23444444443 35789999
Q ss_pred HHHHHHHHHHHhh
Q 040073 377 ERAREILKLNARA 389 (407)
Q Consensus 377 ~~A~~lL~~l~~~ 389 (407)
.+|..+-..+..+
T Consensus 250 ~ka~~v~~~le~~ 262 (265)
T 3b2a_A 250 LKAKKVSDLIDSV 262 (265)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999888777654
No 122
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.39 E-value=1.6e-06 Score=96.24 Aligned_cols=273 Identities=9% Similarity=0.065 Sum_probs=180.8
Q ss_pred hhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH
Q 040073 97 KTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL 175 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~ 175 (407)
...+..++..+.+++ +.|..|...|.+....+...-..-.....++.|++.|.+.+. .++..|+.+|..++..-..
T Consensus 5 ~~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~--~vR~~A~~~L~~l~~~~~~- 81 (1230)
T 1u6g_C 5 SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNG--EVQNLAVKCLGPLVSKVKE- 81 (1230)
T ss_dssp CHHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHHTTSCH-
T ss_pred HhHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHHhCCH-
Confidence 456889999999988 889999999988765421100000111346778888875433 4688898899887754322
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-----hhhhchhhhHHHHHHHccc-CCCCCHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-----QLISVKQEFFTEIVNVLRD-HHQFSQQASKA 249 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-----~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~~ 249 (407)
..+. ..++.|...|.+++..+|..|+.+|..++..-... ........+++.|+..+.+ + +...+..
T Consensus 82 -~~~~----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~---~~~~~~~ 153 (1230)
T 1u6g_C 82 -YQVE----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE---DVSVQLE 153 (1230)
T ss_dssp -HHHH----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS---CHHHHHH
T ss_pred -HHHH----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCC---chHHHHH
Confidence 2221 26788888888888899999999999987543321 0111123689999999984 6 8899999
Q ss_pred HHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCC-
Q 040073 250 ALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVS- 327 (407)
Q Consensus 250 A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s- 327 (407)
|+.+|..++.. ...-.... ...++.|+..|.+. +..+++.|+.+|..++...... +. ...++.++..+.+..
T Consensus 154 al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~-~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~ 227 (1230)
T 1u6g_C 154 ALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP-RLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDS 227 (1230)
T ss_dssp HHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS-SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCc
Confidence 99999998742 11000001 23456666666664 6789999999999998754322 22 235788888776543
Q ss_pred chhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 328 HAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
...+..++.++..++...+.. .... -...++.++..++ +.++.+|+.|...+..+.+..
T Consensus 228 ~~~r~~a~~~l~~l~~~~~~~-~~~~--l~~l~~~ll~~l~-d~~~~vR~~a~~~l~~l~~~~ 286 (1230)
T 1u6g_C 228 MSTTRTYIQCIAAISRQAGHR-IGEY--LEKIIPLVVKFCN-VDDDELREYCIQAFESFVRRC 286 (1230)
T ss_dssp SCSCTTHHHHHHHHHHHSSGG-GTTS--CTTHHHHHHHHHS-SCCTTTHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHhHHH-HHHH--HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHC
Confidence 356667788888888654431 1111 1367888888887 457889999999988887753
No 123
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=2.7e-07 Score=68.01 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=43.4
Q ss_pred CCCcccCccccccC--cCceecCCc-----ccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 6 VPAHFLCPISLQLM--RDPVTVSTG-----ITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~--~dPv~~~~g-----~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.++..|+||++-+ .+|++++|+ |.|-+.||.+|+...+..+||+|+..+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34557899999877 579999996 99999999999987545799999998754
No 124
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=3e-07 Score=65.62 Aligned_cols=46 Identities=17% Similarity=0.150 Sum_probs=40.2
Q ss_pred CCCcccCccccccCcCceecCCccc-ccHHHHHHHHhcCCCCCCccccccccc
Q 040073 6 VPAHFLCPISLQLMRDPVTVSTGIT-YDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 6 ~p~~~~Cpi~~~~~~dPv~~~~g~t-~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.++..|+||++-++|+|.++|||. ||+.|+.+ ...||.|++++..
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc------CCCCCCCCcchhc
Confidence 3456899999999999999999999 99999884 4689999998765
No 125
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.36 E-value=2.7e-05 Score=80.10 Aligned_cols=254 Identities=9% Similarity=0.076 Sum_probs=164.5
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
++.+.+.+.+++ ..|.+|+.++..+...+++.. .++++.+..+|.+.+. .++..|+.+|..++..+.+....
T Consensus 144 ~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~d~--~V~~~Al~~L~~i~~~~~~~~~~ 216 (618)
T 1w63_A 144 AGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEKNH--GVLHTSVVLLTEMCERSPDMLAH 216 (618)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCCCH--HHHHHHHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCCCH--hHHHHHHHHHHHHHHhChHHHHH
Confidence 344455555555 777788888888877666432 2566777777765544 46889999999988776543223
Q ss_pred hhccchhhHHHHHHHHhc---------------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHccc---CC
Q 040073 179 VINNGEEFLESLMRVLKC---------------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRD---HH 240 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~---~~ 240 (407)
+. . .++.++.+|.+ .++-.+.....+|..+...+... ....++.|-.++.. ..
T Consensus 217 ~~--~--~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~-----~~~~~~~L~~l~~~~~~~~ 287 (618)
T 1w63_A 217 FR--K--LVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDS-----SEAMNDILAQVATNTETSK 287 (618)
T ss_dssp HH--T--THHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHH-----HHTTHHHHHHHHHTSCCSS
T ss_pred HH--H--HHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHHHhcccccc
Confidence 32 2 68888887763 36777888888888887543211 11234455555431 10
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHH
Q 040073 241 QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVS 320 (407)
Q Consensus 241 ~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv 320 (407)
+.+..+.-.|++++.++...+ .+.+ .++..|..+|.+. +++++..|+.+|..++... . .++. ...+.++
T Consensus 288 ~~~~aV~~ea~~~i~~l~~~~----~l~~-~a~~~L~~~L~~~-d~~vr~~aL~~L~~i~~~~--p-~~~~--~~~~~i~ 356 (618)
T 1w63_A 288 NVGNAILYETVLTIMDIKSES----GLRV-LAINILGRFLLNN-DKNIRYVALTSLLKTVQTD--H-NAVQ--RHRSTIV 356 (618)
T ss_dssp THHHHHHHHHHHHHHHSCCCH----HHHH-HHHHHHHHHHTCS-STTTHHHHHHHHHHHHHHH--H-HHHG--GGHHHHH
T ss_pred chHHHHHHHHHHHHHhcCCCH----HHHH-HHHHHHHHHHhCC-CCchHHHHHHHHHHHHhhC--H-HHHH--HHHHHHH
Confidence 014578888888888875422 2222 4678888888775 7889999999999887632 1 2232 2355666
Q ss_pred HHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 321 KKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 321 ~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
..+.+.+...+..|+.+|..++... + ... .+..|+..+.. .+...|+.+...+..++..+
T Consensus 357 ~~l~d~d~~Ir~~alelL~~l~~~~-n---v~~-----iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 357 DCLKDLDVSIKRRAMELSFALVNGN-N---IRG-----MMKELLYFLDS-CEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp HGGGSSCHHHHHHHHHHHHHHCCSS-S---THH-----HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSS
T ss_pred HHccCCChhHHHHHHHHHHHHcccc-c---HHH-----HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh
Confidence 6566666788899999999998643 2 222 34677777774 47788888888887777644
No 126
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.36 E-value=9.8e-06 Score=86.12 Aligned_cols=268 Identities=7% Similarity=0.026 Sum_probs=168.0
Q ss_pred HHhcCCC-hHHHHHHHHHHHHhhhCh-h-HHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH---HhH
Q 040073 105 NDAKKSP-STGRKCLRRLRSITLQSE-R-NRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL---KSI 178 (407)
Q Consensus 105 ~~L~~~~-~~~~~al~~L~~l~~~~~-~-~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~---~~~ 178 (407)
+.+.+.+ ..+..|+..|..++.... . ....+ ..+++.|+..+.+.+. .++..++++|..++..-... ...
T Consensus 376 ~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l--~~il~~l~~~l~d~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~ 451 (861)
T 2bpt_A 376 QNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV--HQALPSILNLMNDQSL--QVKETTAWCIGRIADSVAESIDPQQH 451 (861)
T ss_dssp HHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHGGGCSCH--HHHHHHHHHHHHHHHHHGGGSCTTTT
T ss_pred HHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHcCCCcH--HHHHHHHHHHHHHHHHhhhhcCCHHH
Confidence 3344555 788889999999986532 2 22222 2467888888876543 46888888888876432110 112
Q ss_pred hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc--hhhh-hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP--FQLI-SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i-~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
+. ..++.|+..|++. ..++..|+++|.+++..... ...+ -....+++.|+.++++.+ .+..++..++.+|.
T Consensus 452 ~~----~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d-~~~~vr~~a~~al~ 525 (861)
T 2bpt_A 452 LP----GVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRID-NEFNARASAFSALT 525 (861)
T ss_dssp HH----HHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSC-CGGGHHHHHHHHHH
T ss_pred HH----HHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcC-cchHHHHHHHHHHH
Confidence 21 2688888888765 88999999999998764220 1111 111357888888887540 13678999999999
Q ss_pred HhCCCCc-hHHHHHhcCchHHHHHHhhcc--------------cchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHH
Q 040073 256 ELCPWGR-NRIKAVEGGGVSVLVDLLLDV--------------TERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVV 319 (407)
Q Consensus 256 ~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~L 319 (407)
.+..... .....++ ..+|.+++.|... ....++..++.+|..++..-.. -..... ..++.+
T Consensus 526 ~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~l~~~l 602 (861)
T 2bpt_A 526 TMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVAD--MLMGLF 602 (861)
T ss_dssp HHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGHH--HHHHHH
T ss_pred HHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH--HHHHHH
Confidence 9887433 2223333 3677777777531 1345667888888888753211 111111 245666
Q ss_pred HHHHHcCCc-hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 320 SKKILRVSH-AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 320 v~~l~~~s~-~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
+..+...+. ..++.++.++..++...+.+ ....+ ...++.|+..+. +.++..+..|..++..+.+.
T Consensus 603 ~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~-~~~~l--~~i~~~l~~~l~-~~~~~vr~~a~~~l~~l~~~ 669 (861)
T 2bpt_A 603 FRLLEKKDSAFIEDDVFYAISALAASLGKG-FEKYL--ETFSPYLLKALN-QVDSPVSITAVGFIADISNS 669 (861)
T ss_dssp HHHHHSTTGGGTHHHHHHHHHHHHHHHGGG-GHHHH--HHHHHHHHHHHH-CTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCCcHHHHHHHHHHHHHHHHhhh-HHHHH--HHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHH
Confidence 666655555 78888888888888643332 22222 237888888886 45778899999888877664
No 127
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.34 E-value=7.8e-06 Score=73.58 Aligned_cols=188 Identities=11% Similarity=0.084 Sum_probs=136.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc-cCCCCCHHHHHHHHHHHHHhCCCCc-hHH
Q 040073 188 ESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR-DHHQFSQQASKAALKLLVELCPWGR-NRI 265 (407)
Q Consensus 188 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~~A~~aL~~L~~~~~-n~~ 265 (407)
+.+.+.+.+.++..|..|+..|..+........ ......+++.|...+. +. +..++..|+.+|..|+..-. .-.
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~-~~~~~~i~~~L~~~l~kd~---~~~V~~~a~~~l~~la~~l~~~~~ 93 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLE-NGEYGALVSALKKVITKDS---NVVLVAMAGKCLALLAKGLAKRFS 93 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBC-CCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHGGGGH
T ss_pred HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCC-CCCHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHHHhhhHH
Confidence 357788888999999999999999976522111 1122467888999995 77 99999999999999986322 111
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccC
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~ 345 (407)
..+ .-.+|.|++.+.+. ...+++.+..+|..+...... . ..++.+...+.+.++..++.++.+|..+....
T Consensus 94 ~~~-~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~ 164 (242)
T 2qk2_A 94 NYA-SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRT 164 (242)
T ss_dssp HHH-HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence 222 23788999999886 788999999999999875421 1 24566777666667899999999999965443
Q ss_pred C-chHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 346 A-TARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 346 ~-~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
. +......+ ...++.|+.+|. +..+++|..|...+..+.++..
T Consensus 165 ~~~~~~~~~l--~~l~p~l~~~l~-D~~~~VR~~A~~~l~~l~~~vg 208 (242)
T 2qk2_A 165 QPTALNKKLL--KLLTTSLVKTLN-EPDPTVRDSSAEALGTLIKLMG 208 (242)
T ss_dssp CGGGCCHHHH--HHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCccHHHH--HHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHcC
Confidence 2 21112222 247888998887 6689999999999998887643
No 128
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.26 E-value=1.2e-05 Score=78.88 Aligned_cols=267 Identities=9% Similarity=0.038 Sum_probs=168.4
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc--CCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS--DAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~--~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
.++..|.+++ .. ..+...|..++....... .-.+.++.|+..+.+. +. .+++.|+.+|..++..-. ...
T Consensus 94 ~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~--~~~ 165 (462)
T 1ibr_B 94 YVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDID--PEQ 165 (462)
T ss_dssp HHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSC--GGG
T ss_pred HHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCC--chh
Confidence 3556666555 55 667778888876521110 1256889999999876 33 458899999988774210 011
Q ss_pred hhc-cchhhHHHHHHHHhcC--ChhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 179 VIN-NGEEFLESLMRVLKCG--NYQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 179 i~~-~gg~~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
+.. .. ..++.+...|++. +..+|..|+.++.++...-+... ......-+++.|...+.+. +.+++..++.+|
T Consensus 166 ~~~~~~-~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~---~~~vr~~~~~~l 241 (462)
T 1ibr_B 166 LQDKSN-EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP---DTRVRVAALQNL 241 (462)
T ss_dssp TGGGHH-HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHH
T ss_pred hHhHHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC---CHHHHHHHHHHH
Confidence 111 12 2688888999887 78999999999998754311110 0001112466666777776 899999999999
Q ss_pred HHhCCCCchH-HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHH------------------HHh--cc
Q 040073 255 VELCPWGRNR-IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAE------------------LLK--HG 313 (407)
Q Consensus 255 ~~L~~~~~n~-~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~------------------i~~--~~ 313 (407)
..++...... ...+..+.++.++..+.+. +..++..++..+..++........ +.. ..
T Consensus 242 ~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (462)
T 1ibr_B 242 VKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQ 320 (462)
T ss_dssp HHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhh
Confidence 9988633221 1112225677777777765 788999999999888764311110 110 01
Q ss_pred CchHHHHHHHHcC-------CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 040073 314 AGLAVVSKKILRV-------SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLN 386 (407)
Q Consensus 314 g~i~~Lv~~l~~~-------s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l 386 (407)
..+|.+++.|... +...+..|..+|..++...++ .+.. ..++.+...++ +.+.+.|+.|...|..+
T Consensus 321 ~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~-~~~~-----~~~~~l~~~l~-~~~~~~r~aal~~l~~l 393 (462)
T 1ibr_B 321 YLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVP-----HVLPFIKEHIK-NPDWRYRDAAVMAFGCI 393 (462)
T ss_dssp HHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT-THHH-----HHHHHHHHHTT-CSSHHHHHHHHHHHHHT
T ss_pred hccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH-HHHH-----HHHHHHHHHhc-CCChHHHHHHHHHHHHH
Confidence 2456666655332 235678888999988876543 1222 45667777777 45899999999999887
Q ss_pred Hh
Q 040073 387 AR 388 (407)
Q Consensus 387 ~~ 388 (407)
.+
T Consensus 394 ~~ 395 (462)
T 1ibr_B 394 LE 395 (462)
T ss_dssp SS
T ss_pred hc
Confidence 75
No 129
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=98.26 E-value=0.00028 Score=72.45 Aligned_cols=257 Identities=15% Similarity=0.150 Sum_probs=160.8
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHh
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKS 177 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~ 177 (407)
.....++.+.+++ +.+.-.--.+..++..+++.... ++..|.+-|.+.++ .++..|+.+|+++.. . +
T Consensus 71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~l-----~in~l~kDL~~~n~--~vr~lAL~~L~~i~~-~----~ 138 (618)
T 1w63_A 71 GQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLL-----MTNCIKNDLNHSTQ--FVQGLALCTLGCMGS-S----E 138 (618)
T ss_dssp GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHHH-----HHHHHHHHHSCSSS--HHHHHHHHHHHHHCC-H----H
T ss_pred hHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHhcCCCCH--hHHHHHHHHHHhcCC-H----H
Confidence 4455666666666 55554445666666655442211 25566666666554 468999999999873 2 2
Q ss_pred HhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 178 ~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
++ + . .++.+...|.+.++.+|..|+.++..+...... .. .++++.|..+|.+. ++.++..|+.+|..+
T Consensus 139 ~~-~-~--l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~---~v--~~~~~~l~~lL~D~---d~~V~~~Al~~L~~i 206 (618)
T 1w63_A 139 MC-R-D--LAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE---LM--EMFLPATKNLLNEK---NHGVLHTSVVLLTEM 206 (618)
T ss_dssp HH-H-H--HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG---GG--GGGGGGTTTSTTCC---CHHHHHHHHHHHHHH
T ss_pred HH-H-H--HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH---HH--HHHHHHHHHHhCCC---CHhHHHHHHHHHHHH
Confidence 22 2 2 688999999999999999999999999865432 22 25778888899887 999999999999999
Q ss_pred CCCCchHHHHHhcCchHHHHHHhhcc--------------cchhHHHHHHHHHHHHhcCHhh-HHH--------------
Q 040073 258 CPWGRNRIKAVEGGGVSVLVDLLLDV--------------TERRVCELMLNVLDLLCRCAEG-RAE-------------- 308 (407)
Q Consensus 258 ~~~~~n~~~~v~~G~v~~Lv~lL~~~--------------~~~~~~~~al~~L~~L~~~~~~-r~~-------------- 308 (407)
+..++...... ...+|.++.+|.+- .++-.+...+.+|..++..+.. ...
T Consensus 207 ~~~~~~~~~~~-~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~ 285 (618)
T 1w63_A 207 CERSPDMLAHF-RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTET 285 (618)
T ss_dssp CCSHHHHHHHH-HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCC
T ss_pred HHhChHHHHHH-HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhcccc
Confidence 87543211112 25678788777641 1344455566666666553211 100
Q ss_pred -------HH-h-------c-------cCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHH
Q 040073 309 -------LL-K-------H-------GAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLV 366 (407)
Q Consensus 309 -------i~-~-------~-------~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~l 366 (407)
++ + - ..++..|.+++.+.++..+..|+.+|..+.... ..+++ .....++..
T Consensus 286 ~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~------p~~~~-~~~~~i~~~ 358 (618)
T 1w63_A 286 SKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD------HNAVQ-RHRSTIVDC 358 (618)
T ss_dssp SSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH------HHHHG-GGHHHHHHG
T ss_pred ccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC------HHHHH-HHHHHHHHH
Confidence 00 0 0 013445555554455666777777777766421 12222 345566666
Q ss_pred HhcCCCHHHHHHHHHHHHHHHh
Q 040073 367 LQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 367 l~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+. +.+...|.+|..+|..+..
T Consensus 359 l~-d~d~~Ir~~alelL~~l~~ 379 (618)
T 1w63_A 359 LK-DLDVSIKRRAMELSFALVN 379 (618)
T ss_dssp GG-SSCHHHHHHHHHHHHHHCC
T ss_pred cc-CCChhHHHHHHHHHHHHcc
Confidence 76 5578889998888876644
No 130
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=98.25 E-value=4.3e-05 Score=81.14 Aligned_cols=266 Identities=9% Similarity=0.047 Sum_probs=168.0
Q ss_pred HhcCCC-hHHHHHHHHHHHHhhhChhH-HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHH--------
Q 040073 106 DAKKSP-STGRKCLRRLRSITLQSERN-RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYL-------- 175 (407)
Q Consensus 106 ~L~~~~-~~~~~al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~-------- 175 (407)
.+.+++ ..+..+++.|..++...+.. ...+. ...++.+...+.+.+. .++..|+..+..++......
T Consensus 232 ~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~-~~l~~~~~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~~~~~~~~ 308 (861)
T 2bpt_A 232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYME-QALYALTIATMKSPND--KVASMTVEFWSTICEEEIDIAYELAQFP 308 (861)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHH-HTHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 334444 77888888888887653321 22222 1456666666665443 46888888887766432110
Q ss_pred ------HhHhhc-cchhhHHHHHHHHhc-------CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC
Q 040073 176 ------KSIVIN-NGEEFLESLMRVLKC-------GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ 241 (407)
Q Consensus 176 ------~~~i~~-~gg~~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~ 241 (407)
..++.. -. ..++.++..|.. .+...+..|..+|..++..-.. .+. ..+++.+...+.+.
T Consensus 309 ~~~~~~~~~~~~~~~-~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~--~~~--~~l~~~l~~~l~~~-- 381 (861)
T 2bpt_A 309 QSPLQSYNFALSSIK-DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL--EPVLEFVEQNITAD-- 381 (861)
T ss_dssp TCSCCCCCHHHHHHH-HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH--HHHHHHHHHHTTCS--
T ss_pred CCchhhHHHHHHHHH-HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH--hHH--HHHHHHHHHHcCCC--
Confidence 001111 01 267888888864 2357889999999998764321 111 24677777888877
Q ss_pred CCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhH---HHHHhccCch
Q 040073 242 FSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGR---AELLKHGAGL 316 (407)
Q Consensus 242 ~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r---~~i~~~~g~i 316 (407)
+...++.|+.+|..++.... .-...++ ..++.|+..+.+. +..++..++++|..++..-... ..... ..+
T Consensus 382 -~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~il~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~--~~l 456 (861)
T 2bpt_A 382 -NWRNREAAVMAFGSIMDGPDKVQRTYYVH-QALPSILNLMNDQ-SLQVKETTAWCIGRIADSVAESIDPQQHLP--GVV 456 (861)
T ss_dssp -SHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHHGGGSCTTTTHH--HHH
T ss_pred -ChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHhhhhcCCHHHHH--HHH
Confidence 89999999999999997533 1122222 4688888888775 7889999999999888632110 11122 346
Q ss_pred HHHHHHHHcCCchhhHHHHHHHHHHhccCCc---hHHHHHHHHhChHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhh
Q 040073 317 AVVSKKILRVSHAASDRAVRILCSVCKFSAT---ARVLQEMLQVGVVSKLCLVLQVD-ASVKTKERAREILKLNARA 389 (407)
Q Consensus 317 ~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~---~~~~~~~~~~g~i~~Ll~ll~~~-~~~~~k~~A~~lL~~l~~~ 389 (407)
+.+++.+.+ .+..+..|+.+|..++....+ ..+.... ...++.|+.++... .++.+|..|...|..+...
T Consensus 457 ~~l~~~l~~-~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~ 530 (861)
T 2bpt_A 457 QACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEY 530 (861)
T ss_dssp HHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcc-ChHHHHHHHHHHHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHH
Confidence 777776644 377888999999988864221 1111111 24577888888743 3478898899888887764
No 131
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=98.23 E-value=3.9e-05 Score=81.67 Aligned_cols=276 Identities=11% Similarity=0.052 Sum_probs=171.8
Q ss_pred HHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhH-HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH-H
Q 040073 101 VKILNDAKKS--P-STGRKCLRRLRSITLQSERN-RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-L 175 (407)
Q Consensus 101 ~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~-r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-~ 175 (407)
+.+++.+..+ + ..|..|+++|..++..-..+ .........++.+...+.+.+. .++..++.+|..+...... .
T Consensus 175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~--~vr~~a~~~l~~l~~~~~~~~ 252 (876)
T 1qgr_A 175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT--RVRVAALQNLVKIMSLYYQYM 252 (876)
T ss_dssp HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHSGGGC
T ss_pred HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCH--HHHHHHHHHHHHHHHHhHHHH
Confidence 3444455544 3 67888999999887532211 0011111246666666654433 4588888888877643221 1
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC------------------chhhhh--chhhhHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD------------------PFQLIS--VKQEFFTEIVNV 235 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~------------------~~~~i~--~~~g~i~~Lv~l 235 (407)
...+. .. .++.+...+.+.+..++..|..++..++.... ...... .-...++.++..
T Consensus 253 ~~~~~-~~--l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~ 329 (876)
T 1qgr_A 253 ETYMG-PA--LFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (876)
T ss_dssp HHHHT-TT--HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HH--HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence 22232 12 78888888888888999999999888875320 000010 012467778888
Q ss_pred cccCC----CCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHh--hHHHH
Q 040073 236 LRDHH----QFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAE--GRAEL 309 (407)
Q Consensus 236 L~~~~----~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~--~r~~i 309 (407)
+...+ ..+...+..|+.+|..++..... .++. ..++.+.+.+.+. +..+++.++.+|..++.... .....
T Consensus 330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~~~-~~~~r~~a~~~l~~i~~~~~~~~~~~~ 405 (876)
T 1qgr_A 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIKNP-DWRYRDAAVMAFGCILEGPEPSQLKPL 405 (876)
T ss_dssp TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSSSCHHHHHHH
T ss_pred hhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHccCC-ChHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 75210 01457888899999888753221 1122 3556666666664 78899999999999987532 22223
Q ss_pred HhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 040073 310 LKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARA 389 (407)
Q Consensus 310 ~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~ 389 (407)
.. ..+|.++..+.+.++..+..|+.+|..++............ -...++.|+..|+. +++.|..|.+.|..+.+.
T Consensus 406 ~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~ 480 (876)
T 1qgr_A 406 VI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEA 480 (876)
T ss_dssp HH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHH
Confidence 32 46888888777767889999999999999764321000000 12567788888874 488999999999888775
Q ss_pred c
Q 040073 390 W 390 (407)
Q Consensus 390 ~ 390 (407)
.
T Consensus 481 ~ 481 (876)
T 1qgr_A 481 A 481 (876)
T ss_dssp H
T ss_pred h
Confidence 4
No 132
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.22 E-value=1.5e-07 Score=74.43 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=0.0
Q ss_pred ccCccccccCcCce------------------ecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 10 FLCPISLQLMRDPV------------------TVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv------------------~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
-.|+||++.|.+|. .++|||.|.+.||.+|+.. +.+||.|++++
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~--~~~CP~Cr~~~ 110 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT--RQVCPLDNREW 110 (117)
T ss_dssp ----------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc--CCcCCCCCCee
Confidence 47999999998852 2489999999999999975 78999999875
No 133
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.19 E-value=1.2e-05 Score=72.37 Aligned_cols=180 Identities=13% Similarity=0.105 Sum_probs=128.8
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhHH-HHHHhcCcHHHHHHHhh-ccCCCCchHHHHHHHHHhcCCChhH-HHh
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERNR-SCLEAAGAIEFLATIIT-KSDAGSDECDEALSILYHLNVSESY-LKS 177 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r-~~i~~~G~i~~Lv~lL~-~~~~~~~~~~~a~~~L~~L~~~~~~-~~~ 177 (407)
.+.+.+.+.+ ..|..|+..|..+....+... ..+ ...++.|...|. +.+. .++..|+.+|..|+..-.. ...
T Consensus 19 ~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~--~~i~~~L~~~l~kd~~~--~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY--GALVSALKKVITKDSNV--VLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp THHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC--HHHHHHHHHHHHHCSCH--HHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH--HHHHHHHHHHhccCCCH--HHHHHHHHHHHHHHHHHhhhHHH
Confidence 3566677666 999999999999987632210 001 134677777774 4433 4688999999988843211 112
Q ss_pred HhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 178 IVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 178 ~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
.+ . ..++.|+..+.+.+..+|+.|..+|..+..... . ..+++.|...|+++ ++.++..++..|..+
T Consensus 95 ~~---~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~------~-~~ll~~l~~~l~~~---~~~vr~~~l~~l~~~ 160 (242)
T 2qk2_A 95 YA---S-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTS------L-EAQQESIVESLSNK---NPSVKSETALFIARA 160 (242)
T ss_dssp HH---H-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC------H-HHHHHHHHHHTTCS---CHHHHHHHHHHHHHH
T ss_pred HH---H-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC------H-HHHHHHHHHHHcCC---ChHHHHHHHHHHHHH
Confidence 11 2 278899999999999999999999999976432 1 35788899999988 999999999999995
Q ss_pred CC-CCch--HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 258 CP-WGRN--RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 258 ~~-~~~n--~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.. .... -..... ..+|.|+.+|.+. +.+++..|..+|..++.
T Consensus 161 l~~~~~~~~~~~~l~-~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 161 LTRTQPTALNKKLLK-LLTTSLVKTLNEP-DPTVRDSSAEALGTLIK 205 (242)
T ss_dssp HTTCCGGGCCHHHHH-HHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCccHHHHH-HHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence 44 3221 122233 4789999999876 78999999999998876
No 134
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.10 E-value=0.00013 Score=67.85 Aligned_cols=158 Identities=13% Similarity=0.116 Sum_probs=122.9
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
-.+..++..|.+++ ..+..++..|+.+-.++......++..+|+..|+++....+. ..+..++.++.+|..+...-.
T Consensus 118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~g--N~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADH--NYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCH--HHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcCh--HHHHHHHHHHHHHHhcccccc
Confidence 35667888888777 889999999999555668888999999999999999987754 459999999999988877666
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchh-h---------hHHHHHHHcccCCCCCHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQ-E---------FFTEIVNVLRDHHQFSQQA 246 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~-g---------~i~~Lv~lL~~~~~~~~~~ 246 (407)
.++.... +|..+..++.+....+...|..+|..+....+....+...+ . .+..|+.+|++.+..+.++
T Consensus 196 gvvs~~~--fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 196 GVVAHSD--TIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHCHH--HHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred chhCCHH--HHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 7776543 89999999998889999999999999988877555443321 1 2558999997221138999
Q ss_pred HHHHHHHHHHhCC
Q 040073 247 SKAALKLLVELCP 259 (407)
Q Consensus 247 ~~~A~~aL~~L~~ 259 (407)
+..|+..|-.+..
T Consensus 274 q~~amtLIN~lL~ 286 (339)
T 3dad_A 274 LVYTVTLINKTLA 286 (339)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9998876665544
No 135
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.09 E-value=1.2e-06 Score=71.08 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=86.2
Q ss_pred cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC
Q 040073 138 AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD 217 (407)
Q Consensus 138 ~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~ 217 (407)
...++.|+.+|.+.+. .++..|+++|..+. . . .++.|+.+|++.+..+|..|+++|.++..
T Consensus 11 ~~~~~~l~~~L~~~~~--~vR~~A~~~L~~~~-----------~-~--~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--- 71 (131)
T 1te4_A 11 SSGLVPRGSHMADENK--WVRRDVSTALSRMG-----------D-E--AFEPLLESLSNEDWRIRGAAAWIIGNFQD--- 71 (131)
T ss_dssp ----------CCSSCC--CSSSSCCSSTTSCS-----------S-T--THHHHHHGGGCSCHHHHHHHHHHHGGGCS---
T ss_pred cccHHHHHHHhcCCCH--HHHHHHHHHHHHhC-----------c-h--HHHHHHHHHcCCCHHHHHHHHHHHHhcCC---
Confidence 3457888888887665 34777766665432 1 1 36888999999999999999999988742
Q ss_pred chhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHH
Q 040073 218 PFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLD 297 (407)
Q Consensus 218 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~ 297 (407)
.++++.|+.+|+++ ++.++..|+++|.++.. ..+++.|+++|.+. +..++..|+.+|.
T Consensus 72 --------~~a~~~L~~~L~d~---~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~-~~~vr~~A~~aL~ 129 (131)
T 1te4_A 72 --------ERAVEPLIKLLEDD---SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETG-TGFARKVAVNYLE 129 (131)
T ss_dssp --------HHHHHHHHHHHHHC---CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSC-CTHHHHHHHHHGG
T ss_pred --------HHHHHHHHHHHcCC---CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 24689999999988 99999999999999852 24689999999875 7888888888875
Q ss_pred H
Q 040073 298 L 298 (407)
Q Consensus 298 ~ 298 (407)
.
T Consensus 130 ~ 130 (131)
T 1te4_A 130 T 130 (131)
T ss_dssp G
T ss_pred h
Confidence 4
No 136
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.07 E-value=7.9e-05 Score=65.30 Aligned_cols=209 Identities=17% Similarity=0.157 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhCh-hHHHHHHhcCcHHHH
Q 040073 67 HTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSE-RNRSCLEAAGAIEFL 144 (407)
Q Consensus 67 ~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~-~~r~~i~~~G~i~~L 144 (407)
..++.-+..|.-.....-.+ .++..+.-++..|...+ ..+..++..|..+.++-+ ..+....+ ..++.+
T Consensus 10 ~~lre~L~sWkiK~a~ela~--------~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~i 80 (265)
T 3b2a_A 10 TELRELVLSWQILDAVSLAL--------EDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVF 80 (265)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--------HCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHH--------hchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHH
Confidence 45777788885443310000 12444556666666666 888999999999988843 33444444 358999
Q ss_pred HHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc
Q 040073 145 ATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV 224 (407)
Q Consensus 145 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~ 224 (407)
+.++.+.+. -+.-.|+.+|..|-.+.+-..+-... .+..|..++.+++.-.++.|+..+..+.-...
T Consensus 81 I~llk~~dE--kval~A~r~L~~LLe~vpL~~~~y~K----l~~aL~dlik~~~~il~~eaae~Lgklkv~~~------- 147 (265)
T 3b2a_A 81 INALSQENE--KVTIKALRALGYLVKDVPMGSKTFLK----AAKTLVSLLESPDDMMRIETIDVLSKLQPLED------- 147 (265)
T ss_dssp HHTCCSTTH--HHHHHHHHHHHHHHTTCCBCHHHHHH----HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------
T ss_pred HHHHhccch--hHHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------
Confidence 999977665 34677888777654433222222221 56788888889999999999999999822111
Q ss_pred hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 225 KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 225 ~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
..+++..|.+++.+. +.+++.+|+++|.+++....+...+ .+.+.-+-.+|.+. |+.+++.|+.+|..+...+
T Consensus 148 ~~~V~~~l~sLl~Sk---d~~vK~agl~~L~eia~~S~D~~i~--~~I~~eI~elL~~e-D~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 148 SKLVRTYINELVVSP---DLYTKVAGFCLFLNMLNSSADSGHL--TLILDEIPSLLQND-NEFIVELALDVLEKALSFP 220 (265)
T ss_dssp CHHHHHHHHHHHTCS---SHHHHHHHHHHHHHHGGGCSSCCCG--GGTTTTHHHHHTCS-CHHHHHHHHHHHHHHTTSC
T ss_pred hHHHHHHHHHHHhCC---ChhHHHHHHHHHHHhhcccCCHHHH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCc
Confidence 235677888999777 9999999999999999844322211 12344455778786 8999999999999998864
No 137
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=98.04 E-value=6.5e-05 Score=83.36 Aligned_cols=231 Identities=10% Similarity=0.026 Sum_probs=152.4
Q ss_pred hhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH--
Q 040073 98 TQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY-- 174 (407)
Q Consensus 98 ~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~-- 174 (407)
.-++.+++.|.+.+ ..|..|+..|..++...+. ..+ ...++.|+..|.+++. .++..|..+|..++..-..
T Consensus 48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~~~--~~i~~~Ll~~l~d~~~--~vR~~a~~~L~~i~~~l~~~~ 121 (1230)
T 1u6g_C 48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETIVDTLCTNMLSDKE--QLRDISSIGLKTVIGELPPAS 121 (1230)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHHHHHHHHHTTCSSS--HHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--HHH--HHHHHHHHHHhcCCcH--HHHHHHHHHHHHHHHhCCCcc
Confidence 44667777777666 8889999999999875433 111 2246777777765554 4577777777766532111
Q ss_pred -----HHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHH
Q 040073 175 -----LKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASK 248 (407)
Q Consensus 175 -----~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~ 248 (407)
..... . ..+|.|...+. +++...+..|..+|..++........- .....++.|+..|.+. ++.+++
T Consensus 122 ~~~~~~~~~~---~-~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~---~~~vR~ 193 (1230)
T 1u6g_C 122 SGSALAANVC---K-KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSP---RLAVRK 193 (1230)
T ss_dssp --CCTHHHHH---H-HHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCS---SHHHHH
T ss_pred cccchHHHHH---H-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCC---cHHHHH
Confidence 01111 1 27899999998 578999999999999987532211111 1235788888888887 889999
Q ss_pred HHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHcCC
Q 040073 249 AALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILRVS 327 (407)
Q Consensus 249 ~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~~s 327 (407)
.|+.+|..++...... +. ...++.|++.|.+..+..++..++.++..++.... + .+..+ ...+|.+++.+.+.+
T Consensus 194 ~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~-~-~~~~~l~~l~~~ll~~l~d~~ 268 (1230)
T 1u6g_C 194 RTIIALGHLVMSCGNI--VF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAG-H-RIGEYLEKIIPLVVKFCNVDD 268 (1230)
T ss_dssp HHHHHHHHHTTTC------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSS-G-GGTTSCTTHHHHHHHHHSSCC
T ss_pred HHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhH-H-HHHHHHHHHHHHHHHHhcCCC
Confidence 9999999998754332 22 24688888888765334566677888887765321 1 12211 246777777666666
Q ss_pred chhhHHHHHHHHHHhccCCc
Q 040073 328 HAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 328 ~~~~e~a~~~L~~l~~~~~~ 347 (407)
+..++.++.++..++...++
T Consensus 269 ~~vR~~a~~~l~~l~~~~~~ 288 (1230)
T 1u6g_C 269 DELREYCIQAFESFVRRCPK 288 (1230)
T ss_dssp TTTHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHHHChH
Confidence 78899999999888876543
No 138
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.02 E-value=0.00013 Score=66.05 Aligned_cols=195 Identities=12% Similarity=0.109 Sum_probs=132.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHH-hhccCCchhh-hhchhhhHHHHHHHc-ccCCCCCHHHHHHHHHHHHHhCCCCc--hH
Q 040073 190 LMRVLKCGNYQSRSYAIMLLKS-IFEVADPFQL-ISVKQEFFTEIVNVL-RDHHQFSQQASKAALKLLVELCPWGR--NR 264 (407)
Q Consensus 190 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~-i~~~~g~i~~Lv~lL-~~~~~~~~~~~~~A~~aL~~L~~~~~--n~ 264 (407)
+...+++.++..|..|...|.. +......-.. ......++..|...+ ++. +..++..|+.+|..|+..-. .-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~---n~~v~~~A~~al~~la~~l~~~~f 97 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA---NIQAVALAAQSVELICDKLKTPGF 97 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHHHHHCTTTS
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC---CHHHHHHHHHHHHHHHHhcccccc
Confidence 4466788999999999999999 8743221110 122245788888999 566 89999999999999986221 11
Q ss_pred H-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh-ccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 265 I-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK-HGAGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 265 ~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~-~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
. .... -.+|.+++.+.+. ...+++.+..+|..++.+-+- ..... -...++.|+..|.+.++..++.++.+|..+.
T Consensus 98 ~~~y~~-~llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~ 174 (249)
T 2qk1_A 98 SKDYVS-LVFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM 174 (249)
T ss_dssp CHHHHH-HHHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred cHHHHH-HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 1 2222 2688999999876 678888888888888763210 00000 0123455666565557889999999999999
Q ss_pred ccCCch-HHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhcc
Q 040073 343 KFSATA-RVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 343 ~~~~~~-~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~ 391 (407)
...+.. .....-+.-..++.|..+|. +..+.+|..|.+.|..+.+...
T Consensus 175 ~~~~~~~~~l~~~l~~~iip~l~~~l~-D~~~~VR~aA~~~l~~i~~~vG 223 (249)
T 2qk1_A 175 KEEKDGYSTLQRYLKDEVVPIVIQIVN-DTQPAIRTIGFESFAILIKIFG 223 (249)
T ss_dssp HHCCSCSHHHHHHHTTTHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHHC
T ss_pred HHcCCcchhHHHHHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhC
Confidence 765531 11112221368899999997 6799999999999998877644
No 139
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.98 E-value=2.9e-05 Score=70.35 Aligned_cols=190 Identities=12% Similarity=0.137 Sum_probs=129.4
Q ss_pred HHHHhcCCC-hHHHHHHHHHHH-HhhhChhHHHHHHh-cCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH-hH
Q 040073 103 ILNDAKKSP-STGRKCLRRLRS-ITLQSERNRSCLEA-AGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK-SI 178 (407)
Q Consensus 103 ll~~L~~~~-~~~~~al~~L~~-l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~ 178 (407)
+-..+.+.+ ..|..|+..|.. +...++.....-.+ ...+..|.+.|..+.. ..++..|+.+|..|+.+ .+ .-
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n-~~v~~~A~~al~~la~~---l~~~~ 96 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDAN-IQAVALAAQSVELICDK---LKTPG 96 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHH---HCTTT
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHHHh---ccccc
Confidence 344556666 999999999999 87553321100011 1246677777743333 24588899999998832 22 12
Q ss_pred hh--ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 179 VI--NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 179 i~--~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
+. ... ..++.++..++.....++..+..+|..++...+.......-..+++.|+..|+++ ++.++..++.+|..
T Consensus 97 f~~~y~~-~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k---~~~vk~~al~~l~~ 172 (249)
T 2qk1_A 97 FSKDYVS-LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK---TPQIRMECTQLFNA 172 (249)
T ss_dssp SCHHHHH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS---SHHHHHHHHHHHHH
T ss_pred ccHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC---ChHHHHHHHHHHHH
Confidence 22 112 2788999999888899999999999998865432111110135788999999988 99999999999999
Q ss_pred hCCCCc---hHH-HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 257 LCPWGR---NRI-KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 257 L~~~~~---n~~-~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
+..... ... ..+....+|.|.++|.+. +.++++.|..+|..++.
T Consensus 173 ~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 173 SMKEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HHHHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence 886332 111 223246899999999886 88999999999998875
No 140
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.95 E-value=1.4e-06 Score=70.69 Aligned_cols=118 Identities=18% Similarity=0.037 Sum_probs=87.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
.++.|+.+|++++..+|..|+.+|..+.. . .++.|+.+|++. ++.++..|+++|.++..
T Consensus 13 ~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~---~~~vR~~A~~aL~~~~~------ 71 (131)
T 1te4_A 13 GLVPRGSHMADENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNE---DWRIRGAAAWIIGNFQD------ 71 (131)
T ss_dssp --------CCSSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCS---CHHHHHHHHHHHGGGCS------
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCC---CHHHHHHHHHHHHhcCC------
Confidence 58889999999999999999888876531 1 268899999988 99999999999998863
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS 340 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 340 (407)
..+++.|+.+|.+. +..++..|+.+|..+.. ...++.|++.+.+.++..+..|+.+|..
T Consensus 72 ----~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 72 ----ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 23589999999876 88999999999998852 2357788887766667788888777653
No 141
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.79 E-value=0.0014 Score=60.79 Aligned_cols=186 Identities=14% Similarity=0.111 Sum_probs=134.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHH-hhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKS-IFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~ 265 (407)
...+++.|.+++...+..+..-|.. +..+.+....+... +++..|+.+...+ +...+.-+++||.+|-.+.++..
T Consensus 120 a~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~~---~gN~q~Y~L~AL~~LM~~v~Gm~ 195 (339)
T 3dad_A 120 VNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAAA---DHNYQSYILRALGQLMLFVDGML 195 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTTS---CHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHhc---ChHHHHHHHHHHHHHHhcccccc
Confidence 3456677777888888888888887 55556666666665 5599999999888 99999999999999999888877
Q ss_pred HHHh-cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCc----------hHHHHHHHH---cCCchhh
Q 040073 266 KAVE-GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAG----------LAVVSKKIL---RVSHAAS 331 (407)
Q Consensus 266 ~~v~-~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~----------i~~Lv~~l~---~~s~~~~ 331 (407)
.+++ ...|..+..++.+. +..+...|+.+|..++...++...++..+-. ...||..|. .++...+
T Consensus 196 gvvs~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq 274 (339)
T 3dad_A 196 GVVAHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL 274 (339)
T ss_dssp HHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred chhCCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence 7775 45788888888864 7899999999999998865433323322212 568888775 3467889
Q ss_pred HHHHHHHHHHhccCCchHHHHHHH----HhChHHHHHHHHhcCC-CHHHHH
Q 040073 332 DRAVRILCSVCKFSATARVLQEML----QVGVVSKLCLVLQVDA-SVKTKE 377 (407)
Q Consensus 332 e~a~~~L~~l~~~~~~~~~~~~~~----~~g~i~~Ll~ll~~~~-~~~~k~ 377 (407)
.+|+..+..+....++++.+..+. +.|.=..+...|...+ .+..++
T Consensus 275 ~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 275 VYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred HHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 999999988888777654344444 3454445555576543 334443
No 142
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.79 E-value=0.0097 Score=50.23 Aligned_cols=216 Identities=13% Similarity=0.157 Sum_probs=150.6
Q ss_pred ChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 96 DKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 96 ~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
|..-+..++..|..+- -+|..|+..|-.+++.-++...-+ +..|+-+++.+.. ...-.+...+++.++.-.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEa-IpltqeIa~a~G~la~i~P- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEA-IPLTQEIAKAFGQMAKEKP- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCS-HHHHHHHHHHHHHHHHHCH-
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhccc-CchHHHHHHHHhHHHHhCH-
Confidence 4455667777776554 789999999999998877755443 3556667666554 2223555567777664332
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
+++. + .+|.+..=..-|++.++.+...+|..++...+. . ..+++.-+..++.++ +..-+-.|+..+
T Consensus 103 --e~v~--~--vVp~lfanyrigd~kikIn~~yaLeeIaranP~---l--~~~v~rdi~smltsk---d~~Dkl~aLnFi 168 (253)
T 2db0_A 103 --ELVK--S--MIPVLFANYRIGDEKTKINVSYALEEIAKANPM---L--MASIVRDFMSMLSSK---NREDKLTALNFI 168 (253)
T ss_dssp --HHHH--H--HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH---H--HHHHHHHHHHHTSCS---SHHHHHHHHHHH
T ss_pred --HHHH--h--hHHHHHHHHhcCCccceecHHHHHHHHHHhChH---H--HHHHHHHHHHHhcCC---ChHHHHHHHHHH
Confidence 3333 2 688887777779999999999999999876543 2 135778899999987 877777777777
Q ss_pred HHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHH
Q 040073 255 VELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRA 334 (407)
Q Consensus 255 ~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a 334 (407)
..+. +|...-+.- .+|.|..+|.++ +.-++..|+.+|.+++....--+.++. .-++-+.+.|...++..
T Consensus 169 ~alG---en~~~yv~P-fLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRkii~------~kl~e~~D~S~lv~~~V 237 (253)
T 2db0_A 169 EAMG---ENSFKYVNP-FLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTV 237 (253)
T ss_dssp HTCC---TTTHHHHGG-GHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHHHH------HHHHHCCCSCHHHHHHH
T ss_pred HHHh---ccCccccCc-chHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHHHH------HHHHHhcCcHHHHHHHH
Confidence 7765 455554443 589999999997 888999999999999985543323322 23444666677777776
Q ss_pred HHHHHHHhc
Q 040073 335 VRILCSVCK 343 (407)
Q Consensus 335 ~~~L~~l~~ 343 (407)
...|..+.-
T Consensus 238 ~egL~rl~l 246 (253)
T 2db0_A 238 KEGISRLLL 246 (253)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 667766654
No 143
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.78 E-value=0.0017 Score=66.67 Aligned_cols=247 Identities=14% Similarity=0.087 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
..|.+|+.++..+.+.+++.. ...++++.|.++|.+.+. .++..|+.+|..++..+.. .+. . .++.++
T Consensus 163 ~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~d~--~V~~~a~~~l~~i~~~~~~---~~~--~--~~~~~~ 230 (621)
T 2vgl_A 163 SVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQHL--GVVTAATSLITTLAQKNPE---EFK--T--SVSLAV 230 (621)
T ss_dssp HHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCHH---HHT--T--HHHHHH
T ss_pred HHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCCCc--cHHHHHHHHHHHHHHhChH---HHH--H--HHHHHH
Confidence 677778888888877655422 124889999999976554 4689999999888754332 111 1 344444
Q ss_pred HHHh----cC-------------ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC--------CCCCHHH
Q 040073 192 RVLK----CG-------------NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH--------HQFSQQA 246 (407)
Q Consensus 192 ~lL~----~~-------------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~--------~~~~~~~ 246 (407)
..|. .+ ++-.+.....+|..+...++... ...-...+..++..+.+. .+....+
T Consensus 231 ~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~-~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aV 309 (621)
T 2vgl_A 231 SRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAV-RGRLTECLETILNKAQEPPKSKKVQHSNAKNAV 309 (621)
T ss_dssp HHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHH-HHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHH-HHHHHHHHHHHHHhhccCcccccccccchHHHH
Confidence 4443 22 34566666666666653322111 000012333344332111 0001266
Q ss_pred HHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHH-c
Q 040073 247 SKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKIL-R 325 (407)
Q Consensus 247 ~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~-~ 325 (407)
.-.++.++..+...+ .+.. .++..|..+|.+. +++++-.++..|..++........+.. -...++..+. +
T Consensus 310 l~ea~~~i~~l~~~~----~~~~-~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~~~~~~~---~~~~i~~~L~~d 380 (621)
T 2vgl_A 310 LFEAISLIIHHDSEP----NLLV-RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFSHEAVKT---HIETVINALKTE 380 (621)
T ss_dssp HHHHHHHHHHHCCCH----HHHH-HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTTHHHHHT---THHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCcH----HHHH-HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCcHHHHHH---HHHHHHHHhccC
Confidence 777788888886322 2222 3577788888765 788999999999999875422222322 3566666666 5
Q ss_pred CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 326 VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 326 ~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
.+...+..++.+|..++.. ..... .+..|...++. .+...|+.+...+..++.-+
T Consensus 381 ~d~~Ir~~aL~lL~~l~~~----~Nv~~-----Iv~eL~~yl~~-~d~~~~~~~v~~I~~la~k~ 435 (621)
T 2vgl_A 381 RDVSVRQRAVDLLYAMCDR----SNAQQ-----IVAEMLSYLET-ADYSIREEIVLKVAILAEKY 435 (621)
T ss_dssp CCHHHHHHHHHHHHHHCCH----HHHHH-----HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHH
T ss_pred CCHhHHHHHHHHHHHHcCh----hhHHH-----HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhc
Confidence 5677889999999999842 12333 55677777774 46777777777666665533
No 144
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.68 E-value=0.0087 Score=61.37 Aligned_cols=258 Identities=12% Similarity=0.064 Sum_probs=163.0
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhH
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSI 178 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~ 178 (407)
+..+.+.+.+++ ..+.-|+..|.++.. ++.-. ..++.+.++|.+.+.+.-++..|+.++..+...++ +.
T Consensus 113 iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p---~~ 182 (621)
T 2vgl_A 113 NNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP---DL 182 (621)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG---GG
T ss_pred HHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh---hh
Confidence 335566777777 667889999998854 33222 34677888883322222468888888887765332 33
Q ss_pred hhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc----cCCC----------CCH
Q 040073 179 VINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR----DHHQ----------FSQ 244 (407)
Q Consensus 179 i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~----------~~~ 244 (407)
+...+ .++.+..+|...++.++.+|+.+|..++..+... + ...++.+++.|. .++- .++
T Consensus 183 ~~~~~--~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~--~---~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~ 255 (621)
T 2vgl_A 183 VPMGD--WTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEE--F---KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAP 255 (621)
T ss_dssp CCCCS--CHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHH--H---TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESH
T ss_pred cCchh--HHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHH--H---HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCc
Confidence 33323 8999999999889999999999999998654321 1 134555554443 2100 046
Q ss_pred HHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhc---------c-cchhHHHHHHHHHHHHhcCHhhHHHHHhc
Q 040073 245 QASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLD---------V-TERRVCELMLNVLDLLCRCAEGRAELLKH 312 (407)
Q Consensus 245 ~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~---------~-~~~~~~~~al~~L~~L~~~~~~r~~i~~~ 312 (407)
-.+-..+..|..++..++ .+..+.+ .++.++..+.+ . ....+.-+|+.++..+...++.+..
T Consensus 256 w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~---- 329 (621)
T 2vgl_A 256 WLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVR---- 329 (621)
T ss_dssp HHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH----
T ss_pred hHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHH----
Confidence 788888888888886432 3333333 34444433221 1 0236777888888888754433322
Q ss_pred cCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 040073 313 GAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNA 387 (407)
Q Consensus 313 ~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~ 387 (407)
++..|.+++.+.++..+-.|+..|..++...++. .++ ......++..|..+.+...|.+|-.+|..+.
T Consensus 330 --~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~----~~~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~ 397 (621)
T 2vgl_A 330 --ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH----EAV-KTHIETVINALKTERDVSVRQRAVDLLYAMC 397 (621)
T ss_dssp --HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH----HHH-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH----HHH-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHc
Confidence 3556777665566889999999999999765432 222 2356677777773457788888888876554
No 145
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.61 E-value=5.4e-05 Score=54.42 Aligned_cols=48 Identities=15% Similarity=0.328 Sum_probs=38.4
Q ss_pred ccCccccccCcCceec-CCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTV-STGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~-~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.|.||.+++..=..- .|||.|=..||.+||+..+..+||.|++....
T Consensus 16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 5899999988744333 59999999999999976434899999987643
No 146
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.50 E-value=0.01 Score=63.42 Aligned_cols=251 Identities=14% Similarity=0.126 Sum_probs=161.2
Q ss_pred HHHHHHHHHHhhhCh---hHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH
Q 040073 115 RKCLRRLRSITLQSE---RNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM 191 (407)
Q Consensus 115 ~~al~~L~~l~~~~~---~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv 191 (407)
..|+..+..++.... ..--.++ +.+|.++..+.+... .+++.|..++..+...- +...+ . . ++|.|+
T Consensus 70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~--~v~~aa~~~~~~~~~~~--~~~a~-~-~--~~~~~~ 139 (986)
T 2iw3_A 70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDK--EIQSVASETLISIVNAV--NPVAI-K-A--LLPHLT 139 (986)
T ss_dssp HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSH--HHHHHHHHHHHHHHHHS--CGGGH-H-H--HHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCch--HHHHHHHHHHHHHHHhC--CHHHH-H-H--HHHHHH
Confidence 778888888885432 1112222 456666666654443 45665555554433211 11122 1 1 789999
Q ss_pred HHHhcC-ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073 192 RVLKCG-NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEG 270 (407)
Q Consensus 192 ~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~ 270 (407)
..|++. .+..+..|..++..|+... .......-...||.+-+.+-+- .++++++|..++..+|..-+|+.. +
T Consensus 140 ~~~~~~~kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~---k~~v~~~~~~~~~~~~~~~~n~d~---~ 212 (986)
T 2iw3_A 140 NAIVETNKWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDT---KKEVKAAATAAMTKATETVDNKDI---E 212 (986)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCS---SHHHHHHHHHHHHHHGGGCCCTTT---G
T ss_pred HHhccccchHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccC---cHHHHHHHHHHHHHHHhcCCCcch---h
Confidence 999765 7999999999999998654 2222222245777777777766 899999999999999986666542 3
Q ss_pred CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHH
Q 040073 271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARV 350 (407)
Q Consensus 271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~ 350 (407)
..||.|++.+.+. +-..+++..|...+--.+--.-... -.+|.|.+-|...+...+..++-+.-|+|+--.|...
T Consensus 213 ~~~~~~~~~~~~p---~~~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~ 287 (986)
T 2iw3_A 213 RFIPSLIQCIADP---TEVPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQV 287 (986)
T ss_dssp GGHHHHHHHHHCT---THHHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred hhHHHHHHHhcCh---hhhHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHH
Confidence 4699999999863 2245555555544332222222222 2467777766555677788999999999998777422
Q ss_pred HHHHHHhChHHHHHHHHh----cCCCHHHHHHHHHHHHHHHhhccC
Q 040073 351 LQEMLQVGVVSKLCLVLQ----VDASVKTKERAREILKLNARAWRD 392 (407)
Q Consensus 351 ~~~~~~~g~i~~Ll~ll~----~~~~~~~k~~A~~lL~~l~~~~~~ 392 (407)
.. -.+|+|+--++ .-..|++|+.|...+..|.+.-..
T Consensus 288 ~~-----~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~ 328 (986)
T 2iw3_A 288 IA-----PFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV 328 (986)
T ss_dssp HH-----HHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred Hh-----hhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence 22 24555555544 335899999999999999887443
No 147
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.42 E-value=9e-05 Score=51.08 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=40.3
Q ss_pred CcccCccccccCcCceecCCcc-----cccHHHHHHHHhcCCCCCCcccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
+.-.|.||++-..+|.+.||.+ -|=+.||.+|+...++.+||+|+.++.
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 4457999998888898888653 688999999998655789999998763
No 148
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.36 E-value=0.00012 Score=54.95 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=38.6
Q ss_pred cCccccccCcCce-ecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 11 LCPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 11 ~Cpi~~~~~~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
.|++|.-++..=. ++||+|.||..|+..|.++ +...||.|++++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~-~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK-GDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT-TCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc-cCCCCcCcCCeeee
Confidence 6888887776655 7799999999999999876 48899999988643
No 149
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.14 E-value=0.0084 Score=64.01 Aligned_cols=261 Identities=11% Similarity=0.102 Sum_probs=170.0
Q ss_pred HHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH---H
Q 040073 100 IVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY---L 175 (407)
Q Consensus 100 i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~---~ 175 (407)
+..+++.++.+. ..+..+...|..+...+... .....+.+..|.+.+.+..+ -|.|+.++..|+..... .
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~~----~~~a~~~~~~~~~~~~~~~~~ 89 (986)
T 2iw3_A 16 LEELFQKLSVATADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKKT----AANAMQAVAHIANQSNLSPSV 89 (986)
T ss_dssp HHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHHH----HHHHHHHHHHHTCTTTCCTTT
T ss_pred HHHHHhhccccchhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccCC----HHHHHHHHHHHHHhcCCCCCc
Confidence 334555555443 55667777777776542111 11113566777777765433 27888888888854321 1
Q ss_pred HhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHH
Q 040073 176 KSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLV 255 (407)
Q Consensus 176 ~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~ 255 (407)
..++. + .++.+...+......+|..|..++..+...-.... + ..++|.|+..|.+. .....+..|+.+|-
T Consensus 90 e~~~~--~--~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a-~---~~~~~~~~~~~~~~--~kw~~k~~~l~~~~ 159 (986)
T 2iw3_A 90 EPYIV--Q--LVPAICTNAGNKDKEIQSVASETLISIVNAVNPVA-I---KALLPHLTNAIVET--NKWQEKIAILAAFS 159 (986)
T ss_dssp HHHHH--T--THHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGG-H---HHHHHHHHHHHHHC--CCHHHHHHHHHHHH
T ss_pred ccchH--H--HHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHH-H---HHHHHHHHHHhccc--cchHHHHHHHHHHH
Confidence 23333 2 57777777777778899999888888865433221 1 35799999999765 25789999999999
Q ss_pred HhCCCCchHHHHHh--cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHH
Q 040073 256 ELCPWGRNRIKAVE--GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDR 333 (407)
Q Consensus 256 ~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~ 333 (407)
.|+.... .++.. -..||.+-+.+-+. .++++..|..++..+|..-+|+. -...||.||+.|.+. .....
T Consensus 160 ~~~~~~~--~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p--~~~~~ 230 (986)
T 2iw3_A 160 AMVDAAK--DQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADP--TEVPE 230 (986)
T ss_dssp HHHHHSH--HHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCT--THHHH
T ss_pred HHHHHhH--HHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcCh--hhhHH
Confidence 9986332 23322 35788888888775 78999999999999998666553 235799999988764 33444
Q ss_pred HHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 334 AVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 334 a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
++..|...+--..- -.-.. +=.+|-|..-|. ..+..+|++++.++.++.+..
T Consensus 231 ~~~~l~~~tfv~~v---~~~~l-~~~~p~l~r~l~-~~~~~~~r~~~~~~~n~~~lv 282 (986)
T 2iw3_A 231 TVHLLGATTFVAEV---TPATL-SIMVPLLSRGLN-ERETGIKRKSAVIIDNMCKLV 282 (986)
T ss_dssp HHHHHTTCCCCSCC---CHHHH-HHHHHHHHHHHT-SSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHhhcCeeEeee---cchhH-HHHHHHHHhhhc-cCcchhheeeEEEEcchhhhc
Confidence 56666655542221 11111 124566666676 458889999999999998853
No 150
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.08 E-value=0.037 Score=58.64 Aligned_cols=167 Identities=9% Similarity=-0.020 Sum_probs=108.2
Q ss_pred hHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchH
Q 040073 186 FLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNR 264 (407)
Q Consensus 186 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~ 264 (407)
++..|+..+. ..+..++..++..|.-+.... ...++.+++.|... .++-++..++.++.--.....|.
T Consensus 508 ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~--~dp~vRygaa~alglAyaGTGn~ 576 (963)
T 4ady_A 508 AIHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLAS--DESLLRYGGAFTIALAYAGTGNN 576 (963)
T ss_dssp HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcCCCCH
Confidence 4555555543 346677777888887764222 23467788887754 27777777777776444444444
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHc-CCchhhHHHHHHHHHHhc
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILR-VSHAASDRAVRILCSVCK 343 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~ 343 (407)
. +|..|+..+.+..+..++..|+..|..+..... ..++.++..+.+ .++..+..|..+|..++.
T Consensus 577 ~------aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~a 641 (963)
T 4ady_A 577 S------AVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACA 641 (963)
T ss_dssp H------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTS
T ss_pred H------HHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhcc
Confidence 3 367777777665467888889999988876542 246667765554 467888889999999987
Q ss_pred cCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 344 FSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 344 ~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+.++. . ++..|..++. +.+..+++.|...|.++..
T Consensus 642 Gn~~~----~-----aid~L~~L~~-D~d~~Vrq~Ai~ALG~Ig~ 676 (963)
T 4ady_A 642 GKGLQ----S-----AIDVLDPLTK-DPVDFVRQAAMIALSMILI 676 (963)
T ss_dssp SSCCH----H-----HHHHHHHHHT-CSSHHHHHHHHHHHHHHST
T ss_pred CCCcH----H-----HHHHHHHHcc-CCCHHHHHHHHHHHHHHhc
Confidence 66552 2 2333333333 5677777777777766544
No 151
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.05 E-value=0.066 Score=52.16 Aligned_cols=223 Identities=12% Similarity=0.170 Sum_probs=139.5
Q ss_pred HHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc---------------C--ChhHHHHHHHHHHHhhccCCchh
Q 040073 158 CDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC---------------G--NYQSRSYAIMLLKSIFEVADPFQ 220 (407)
Q Consensus 158 ~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~---------------~--~~~~~~~a~~~L~~Ls~~~~~~~ 220 (407)
+.-++..|..|...++ .+.++-+.+|..++.++.+++. + ..+.+-++.-+++-|+..++...
T Consensus 185 ~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~ 263 (480)
T 1ho8_A 185 CYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFAN 263 (480)
T ss_dssp HHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHH
Confidence 4557777777776665 4555544333467888765542 1 24456788888999987666444
Q ss_pred hhhchhhh--HHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc-hH----HHHH-hcCchHHHHHHhhcc--cchhHHH
Q 040073 221 LISVKQEF--FTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR-NR----IKAV-EGGGVSVLVDLLLDV--TERRVCE 290 (407)
Q Consensus 221 ~i~~~~g~--i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~----~~~v-~~G~v~~Lv~lL~~~--~~~~~~~ 290 (407)
.+.. .+. ++.|+.+++.. ...++.+.++.+|+||..... +. ..++ ..++ +.+++.|... +|+++.+
T Consensus 264 ~l~~-~~i~~~~~L~~i~k~s--~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~e 339 (480)
T 1ho8_A 264 ELVQ-KYLSDFLDLLKLVKIT--IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQ 339 (480)
T ss_dssp HHHT-TSHHHHHHHHHHHHHC--CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHH
T ss_pred HHHh-cchHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHH
Confidence 4433 343 36788888876 467899999999999998542 22 2233 3344 6677777764 2555554
Q ss_pred HHHHHHHHH-------hcCHhhHHHHHh------------------------c-cCchHHHHHHHHcC----------Cc
Q 040073 291 LMLNVLDLL-------CRCAEGRAELLK------------------------H-GAGLAVVSKKILRV----------SH 328 (407)
Q Consensus 291 ~al~~L~~L-------~~~~~~r~~i~~------------------------~-~g~i~~Lv~~l~~~----------s~ 328 (407)
..-.+...| +..++.+.++.. + ...+..|+++|... ++
T Consensus 340 dl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~ 419 (480)
T 1ho8_A 340 DISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEK 419 (480)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHH
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCc
Confidence 433333333 323333333322 0 12456777766531 35
Q ss_pred hhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 329 AASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 329 ~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
.....|+.=+..++++.++. +..+-+.|+=+.++.+|. +.++.+|..|-..++.+-.
T Consensus 420 ~~laVAc~Digefvr~~P~g--r~i~~~lg~K~~VM~Lm~-h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 420 IIIQVALNDITHVVELLPES--IDVLDKTGGKADIMELLN-HSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHHHCTTH--HHHHHHHSHHHHHHHHTS-CSSHHHHHHHHHHHHHHHH
T ss_pred ceEEeecccHHHHHHHCcch--hHHHHHcCcHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 55667777788888877763 555557899888899987 5689999999888865543
No 152
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=97.01 E-value=0.16 Score=53.94 Aligned_cols=207 Identities=11% Similarity=-0.002 Sum_probs=129.1
Q ss_pred HHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch
Q 040073 141 IEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF 219 (407)
Q Consensus 141 i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~ 219 (407)
+..|++.+..... ..++..++..|+.+..++++ .++.+++.|.. .++-+|..++.++.-- .....+
T Consensus 509 i~~LL~~~~e~~~-e~vrR~aalgLGll~~g~~e-----------~~~~li~~L~~~~dp~vRygaa~alglA-yaGTGn 575 (963)
T 4ady_A 509 IHDMFTYSQETQH-GNITRGLAVGLALINYGRQE-----------LADDLITKMLASDESLLRYGGAFTIALA-YAGTGN 575 (963)
T ss_dssp HHHHHHHHHHCSC-HHHHHHHHHHHHHHTTTCGG-----------GGHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTSCC
T ss_pred HHHHHHHHhccCc-HHHHHHHHHHHHhhhCCChH-----------HHHHHHHHHHhCCCHHHHHHHHHHHHHH-hcCCCC
Confidence 3555555443332 23455566666655544321 46677777765 5666776666666532 222211
Q ss_pred hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHH
Q 040073 220 QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLL 299 (407)
Q Consensus 220 ~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L 299 (407)
..+|..|+..+.+. .+..+++.|+.+|..+...++ ..++.++++|.+..++.++..+..+|..+
T Consensus 576 ------~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~--------e~v~rlv~~L~~~~d~~VR~gAalALGli 639 (963)
T 4ady_A 576 ------NSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDY--------TTVPRIVQLLSKSHNAHVRCGTAFALGIA 639 (963)
T ss_dssp ------HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSC--------SSHHHHTTTGGGCSCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCH--------HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 24577777776655 378899999999998776543 35788888776654889999999999999
Q ss_pred hcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-CCCHHHHHH
Q 040073 300 CRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-DASVKTKER 378 (407)
Q Consensus 300 ~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-~~~~~~k~~ 378 (407)
+.+... ..+ +..|..+..+.+..++..|+.+|..+.....+.. ...+ ++.+..|...... +.++.++-.
T Consensus 640 ~aGn~~-~~a------id~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~-~~rv--a~~l~~L~~~~~dk~~d~~~~fg 709 (963)
T 4ady_A 640 CAGKGL-QSA------IDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKL-NPQV--ADINKNFLSVITNKHQEGLAKFG 709 (963)
T ss_dssp TSSSCC-HHH------HHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTT-CTTH--HHHHHHHHHHHHCSSSCHHHHHH
T ss_pred ccCCCc-HHH------HHHHHHHccCCCHHHHHHHHHHHHHHhcCCcccc-chHH--HHHHHHHHHHHhcccccHHHHHH
Confidence 865432 222 3455555555568889999999999998655420 0011 2345566666653 235667777
Q ss_pred HHHHHHHH
Q 040073 379 AREILKLN 386 (407)
Q Consensus 379 A~~lL~~l 386 (407)
|+-...++
T Consensus 710 a~iAqGll 717 (963)
T 4ady_A 710 ACVAQGIM 717 (963)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77666665
No 153
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=97.00 E-value=0.16 Score=49.52 Aligned_cols=251 Identities=14% Similarity=0.112 Sum_probs=152.2
Q ss_pred hcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChh---HHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHh
Q 040073 137 AAGAIEFLATIITKSDAGSDECDEALSILYHLNVSES---YLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSI 212 (407)
Q Consensus 137 ~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~---~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~L 212 (407)
...++..++++|...... +.....+..+..|...++ ...+++.+.+ .....+... +.+++.-....+..++..+
T Consensus 75 ~~~~~~~~l~lL~~~~~~-d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~-~~~~~l~~~~~~~dd~~~ll~a~~l~~ll 152 (480)
T 1ho8_A 75 NGKTLIPLIHLLSTSDNE-DCKKSVQNLIAELLSSDKYGDDTVKFFQEDP-KQLEQLFDVSLKGDFQTVLISGFNVVSLL 152 (480)
T ss_dssp SSTTHHHHHHHHHSCCCH-HHHHHHHHHHHHHHHCSSSSHHHHHHHHHCT-THHHHHHHHCSCSSHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhhcChH-HHHHHHHHHHHHHHhcCcchHHHHHHHhhCc-ccchHHHHHHhcccchHHHHHHHHHHHHH
Confidence 345678899999876552 346677777766655543 3344544433 133333332 2233344445555555555
Q ss_pred hccCCchhhhhchhhhHHH------HHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC--chHHHHHHhhcc-
Q 040073 213 FEVADPFQLISVKQEFFTE------IVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG--GVSVLVDLLLDV- 283 (407)
Q Consensus 213 s~~~~~~~~i~~~~g~i~~------Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G--~v~~Lv~lL~~~- 283 (407)
+..... ....++. +...|.+. .+...+-.++.+|..|...++.|..+.+++ .+|.+++++...
T Consensus 153 ~~~~~~------~~~~l~~l~~~~~~~~~L~~~--~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~ 224 (480)
T 1ho8_A 153 VQNGLH------NVKLVEKLLKNNNLINILQNI--EQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRAT 224 (480)
T ss_dssp TSTTTC------CHHHHHHHHHCHHHHHHHHCT--TCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred hccCCc------cHhHHHHHhhhHHHHHHhccc--cCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhh
Confidence 432211 1223333 33445442 145566688999999999999999998753 477777655421
Q ss_pred ---------------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCch--HHHHHHHHcC-CchhhHHHHHHHHHHhccC
Q 040073 284 ---------------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGL--AVVSKKILRV-SHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 284 ---------------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i--~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~ 345 (407)
.+..+.-.++-+++.|+-.++.-..+... +.+ +.|+..+... .++....++.+|.|+....
T Consensus 225 ~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~ 303 (480)
T 1ho8_A 225 DSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTR 303 (480)
T ss_dssp C-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSS
T ss_pred ccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHHHhccc
Confidence 02345678899999999998877666553 322 4666645443 4788999999999999754
Q ss_pred Cc--hHHHHHHHHhChHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhccCCCCCCc
Q 040073 346 AT--ARVLQEMLQVGVVSKLCLVLQVD--ASVKTKERAREILKLNARAWRDSPCVPA 398 (407)
Q Consensus 346 ~~--~~~~~~~~~~g~i~~Ll~ll~~~--~~~~~k~~A~~lL~~l~~~~~~~~~~~~ 398 (407)
.. .....+++-.|.+.+++..|+.. .++...+--..+...|.+....-+.++-
T Consensus 304 ~~~~~~~~~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDe 360 (480)
T 1ho8_A 304 VKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDE 360 (480)
T ss_dssp STTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred chhhhhHHHHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 21 23344444333336778888765 5888888888888888776554443333
No 154
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=96.81 E-value=0.02 Score=56.54 Aligned_cols=246 Identities=11% Similarity=0.064 Sum_probs=154.7
Q ss_pred hHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChh--HHHHHHhcCcHHHHHHHhh--ccC-----C-CCchHHHHHHHHHh
Q 040073 99 QIVKILNDAKKSP-STGRKCLRRLRSITLQSER--NRSCLEAAGAIEFLATIIT--KSD-----A-GSDECDEALSILYH 167 (407)
Q Consensus 99 ~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~--~r~~i~~~G~i~~Lv~lL~--~~~-----~-~~~~~~~a~~~L~~ 167 (407)
-...|+..|.++. +.|..|+-.||.+.+.... .|..-......-.|+.+|. ... . ...++|.++.+|+.
T Consensus 175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa 254 (800)
T 3oc3_A 175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR 254 (800)
T ss_dssp TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence 3457778888877 9999999999998776431 1110000122233333332 211 1 12468988888888
Q ss_pred cCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHH
Q 040073 168 LNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 168 L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
+ .+-+.. .. ++..|+..+..+.+++|.-+.-.|.++. + .+..-.++++.++.-|++. +++++
T Consensus 255 L-~hLp~e------~~--IL~qLV~~l~~~~WEVRHGGLLGLKYL~---D---LL~~Ld~Vv~aVL~GL~D~---DDDVR 316 (800)
T 3oc3_A 255 I-YPLIGP------ND--IIEQLVGFLDSGDWQVQFSGLIALGYLK---E---FVEDKDGLCRKLVSLLSSP---DEDIK 316 (800)
T ss_dssp H-TTTSCS------CC--HHHHHTTGGGCSCHHHHHHHHHHHHHTG---G---GCCCHHHHHHHHHHHTTCS---SHHHH
T ss_pred H-HhCChh------HH--HHHHHHhhcCCCCeeehhhhHHHHHHHH---H---HHHHHHHHHHHHHhhcCCc---ccHHH
Confidence 7 543322 22 6777777778889999999999999991 1 1111357889999999988 99999
Q ss_pred HHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccc-hhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073 248 KAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTE-RRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 248 ~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~-~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
..|+.+|..++ .++... ..+..+.+.|.+..+ .......+..|+.|+..+.. ......-||.|.-++.+.
T Consensus 317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRHt 387 (800)
T 3oc3_A 317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTSP 387 (800)
T ss_dssp HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTCS
T ss_pred HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcCC
Confidence 99999999998 222211 245566667765422 23345667788888776631 112245677777766666
Q ss_pred CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 327 SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 327 s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
-..++..++.+|..+. +..+.. .+..-+-....+.+++.+..+.+
T Consensus 388 ITSVR~AVL~TL~tfL----~~~~LR---------LIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 388 VPEVRTSILNMVKNLS----EESIDF---------LVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp SHHHHHHHHHHTTTCC----CHHHHH---------HHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH----hhhHHH---------HHHHHHHhCCcHHHHHHHHHHHH
Confidence 6888998888887766 221222 22222222346777877777665
No 155
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.79 E-value=0.00023 Score=65.88 Aligned_cols=48 Identities=25% Similarity=0.506 Sum_probs=38.7
Q ss_pred ccCccccccCcC----cee----cCCcccccHHHHHHHHhcCCC---------CCCccccccccc
Q 040073 10 FLCPISLQLMRD----PVT----VSTGITYDRVNIERWLFTCKN---------NTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~d----Pv~----~~~g~t~~r~~i~~~~~~~~~---------~~cP~~~~~~~~ 57 (407)
.-|+||...+.+ |-. ..|||.|-..||.+|+....+ ..||.|+++++.
T Consensus 309 ~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 309 LRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred ccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 469999999987 533 369999999999999975211 579999998876
No 156
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=96.77 E-value=0.17 Score=42.71 Aligned_cols=213 Identities=12% Similarity=0.097 Sum_probs=141.1
Q ss_pred cHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCc
Q 040073 140 AIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADP 218 (407)
Q Consensus 140 ~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~ 218 (407)
++..++++|+++-= .++.+|+.++..++..-+ +++. . .+..|+.+++ +.....-+..+.+++.++...+.
T Consensus 33 ~l~~lI~~LDDDlw--tV~kNAl~vi~~i~~~~~---el~e--p--l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 33 VLKKLIELLDDDLW--TVVKNAISIIMVIAKTRE---DLYE--P--MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCG---GGHH--H--HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHhccHHH--HHHHhHHHHHHHHHHHhH---HHHH--H--HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 56777888875542 369999999988775433 2222 1 4666666765 45667767888899988865432
Q ss_pred hhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073 219 FQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL 298 (407)
Q Consensus 219 ~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 298 (407)
+.. +.+|.|..=++-+ ++.++-+...+|-.++...+.-. .+++.-+..+|.+. +..-+-.| |..
T Consensus 104 ---~v~--~vVp~lfanyrig---d~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltsk-d~~Dkl~a---LnF 167 (253)
T 2db0_A 104 ---LVK--SMIPVLFANYRIG---DEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSK-NREDKLTA---LNF 167 (253)
T ss_dssp ---HHH--HHHHHHHHHSCCC---SHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCS-SHHHHHHH---HHH
T ss_pred ---HHH--hhHHHHHHHHhcC---CccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCC-ChHHHHHH---HHH
Confidence 322 5678888888888 99999999999999876332211 23456677788764 44334444 444
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKER 378 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~ 378 (407)
+..-+++.-+-+. + .+|.|..+|.+.+.-.+..|+.+|.+++.. +..++.. .+.++ .-+. +.+.-++.+
T Consensus 168 i~alGen~~~yv~-P-fLprL~aLL~D~deiVRaSaVEtL~~lA~~--npklRki-----i~~kl-~e~~-D~S~lv~~~ 236 (253)
T 2db0_A 168 IEAMGENSFKYVN-P-FLPRIINLLHDGDEIVRASAVEALVHLATL--NDKLRKV-----VIKRL-EELN-DTSSLVNKT 236 (253)
T ss_dssp HHTCCTTTHHHHG-G-GHHHHHGGGGCSSHHHHHHHHHHHHHHHTS--CHHHHHH-----HHHHH-HHCC-CSCHHHHHH
T ss_pred HHHHhccCccccC-c-chHHHHHHHcCcchhhhHHHHHHHHHHHHc--CHHHHHH-----HHHHH-HHhc-CcHHHHHHH
Confidence 4443444444444 3 689999977777888999999999999974 3334443 22233 4344 568888888
Q ss_pred HHHHHHHHHh
Q 040073 379 AREILKLNAR 388 (407)
Q Consensus 379 A~~lL~~l~~ 388 (407)
..+-|..+.-
T Consensus 237 V~egL~rl~l 246 (253)
T 2db0_A 237 VKEGISRLLL 246 (253)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8877766544
No 157
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.76 E-value=0.00066 Score=52.08 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=29.7
Q ss_pred CcccCccccc-cCcCcee--cCCcccccHHHHHHHHh
Q 040073 8 AHFLCPISLQ-LMRDPVT--VSTGITYDRVNIERWLF 41 (407)
Q Consensus 8 ~~~~Cpi~~~-~~~dPv~--~~~g~t~~r~~i~~~~~ 41 (407)
+++.|+||.+ .+++||. +.|||+||+.|++.++.
T Consensus 2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhc
Confidence 4689999996 5899999 89999999999999543
No 158
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.0025 Score=59.89 Aligned_cols=63 Identities=17% Similarity=0.277 Sum_probs=51.7
Q ss_pred cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHH
Q 040073 9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQ 74 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~ 74 (407)
.+.|||+...|+.||.- .|.|. ||...+.+...+.+...||+|++.+... +|.....+.++++
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~---dL~ID~~~~~IL~ 314 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALE---NLAISEFVDDILQ 314 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGG---GEEEBHHHHHHHT
T ss_pred eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHH---HeeEcHHHHHHHH
Confidence 37999999999999966 59998 9998888877665678999999988764 7777777766654
No 159
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.27 E-value=0.16 Score=47.94 Aligned_cols=241 Identities=15% Similarity=0.074 Sum_probs=137.0
Q ss_pred CccHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHH
Q 040073 64 TPNHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIE 142 (407)
Q Consensus 64 ~~n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~ 142 (407)
.+|..+|+++--+...-.. .+... ---+..+.+.+++++ -.+-.|++.|.++... +.-+. ..+
T Consensus 79 s~d~~lKrLvYLyl~~~~~-------~~~e~--iLv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~ 142 (355)
T 3tjz_B 79 SNDPTLRRMCYLTIKEMSC-------IAEDV--IIVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IER 142 (355)
T ss_dssp CCCHHHHHHHHHHHHHHTT-------TSSCG--GGGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHH
T ss_pred CCCHHHHHHHHHHHHHhCC-------CHHHH--HHHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHH
Confidence 4578888888776655331 11111 123557788888887 7777899999998654 22222 245
Q ss_pred HHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073 143 FLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLI 222 (407)
Q Consensus 143 ~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 222 (407)
.+.+.|.+.++ -++..|+-....|....++ ++. + +++.+-+++.+.++.+.-+|..+|..+...+
T Consensus 143 ~lk~~L~d~~p--yVRk~A~l~~~kL~~~~pe---~v~--~--~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d------ 207 (355)
T 3tjz_B 143 YMKQAIVDKVP--SVSSSALVSSLHLLKCSFD---VVK--R--WVNEAQEAASSDNIMVQYHALGLLYHVRKND------ 207 (355)
T ss_dssp HHHHHHTCSSH--HHHHHHHHHHHHHTTTCHH---HHH--T--THHHHHHHTTCSSHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHcCCCCH--HHHHHHHHHHHHHhccCHH---HHH--H--HHHHHHHHhcCCCccHHHHHHHHHHHHHhhc------
Confidence 56666666655 4588888777777655443 332 2 6888999999899999999999999987543
Q ss_pred hchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC
Q 040073 223 SVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 223 ~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~ 302 (407)
..++..|+..+..++-.++-++-.-++.+..++..++.. .....++.|...|++. +..+.-+|+.++..+...
T Consensus 208 ---~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~---~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~ 280 (355)
T 3tjz_B 208 ---RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS---RDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGC 280 (355)
T ss_dssp ---HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------------CCCCCS-SHHHHHHHHHHHTC----
T ss_pred ---hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh---hHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCC
Confidence 124566666665431114555555555555554432100 1234556666677665 778888999998888653
Q ss_pred HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCc
Q 040073 303 AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 303 ~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
+. .... .++..|..++.+.++..+-.|+..|..+....++
T Consensus 281 ~~---~~~~--~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~ 320 (355)
T 3tjz_B 281 SA---KELA--PAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS 320 (355)
T ss_dssp ------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred CH---HHHH--HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence 32 1222 2456677767767788899999999888875443
No 160
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=96.13 E-value=0.29 Score=46.17 Aligned_cols=137 Identities=14% Similarity=0.067 Sum_probs=100.2
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhh
Q 040073 142 EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQL 221 (407)
Q Consensus 142 ~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~ 221 (407)
..+++++.+.+. ..+.-..-.+.+++... .+.+. ++..|.+=++++++-+|..|.++|.++... +
T Consensus 71 ~~v~kl~~s~d~--~lKrLvYLyl~~~~~~~---~e~iL-----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~-~---- 135 (355)
T 3tjz_B 71 FAMTKLFQSNDP--TLRRMCYLTIKEMSCIA---EDVII-----VTSSLTKDMTGKEDSYRGPAVRALCQITDS-T---- 135 (355)
T ss_dssp HHHHGGGGCCCH--HHHHHHHHHHHHHTTTS---SCGGG-----GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT-T----
T ss_pred HHHHHHhcCCCH--HHHHHHHHHHHHhCCCH---HHHHH-----HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH-H----
Confidence 445666666554 23555555555666542 23332 577888888999999999999999999533 2
Q ss_pred hhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 222 ISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 222 i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
+. ....+.+.+.|.+. ++-+++.|+-+.+.|....+. +++ +.++.+-+++.+. ++.+.-.|+++|..+..
T Consensus 136 m~--~~l~~~lk~~L~d~---~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~-n~~V~~~Al~lL~ei~~ 205 (355)
T 3tjz_B 136 ML--QAIERYMKQAIVDK---VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSD-NIMVQYHALGLLYHVRK 205 (355)
T ss_dssp TH--HHHHHHHHHHHTCS---SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCS-SHHHHHHHHHHHHHHHT
T ss_pred HH--HHHHHHHHHHcCCC---CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCC-CccHHHHHHHHHHHHHh
Confidence 22 24677788889888 999999999999999864433 343 6899999999886 78888999999999987
Q ss_pred CH
Q 040073 302 CA 303 (407)
Q Consensus 302 ~~ 303 (407)
++
T Consensus 206 ~d 207 (355)
T 3tjz_B 206 ND 207 (355)
T ss_dssp TC
T ss_pred hc
Confidence 54
No 161
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.04 E-value=0.11 Score=46.25 Aligned_cols=151 Identities=17% Similarity=0.175 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCC---chHHHHHHHHHhcCCCh-hHHHhHhhccchhhHHH
Q 040073 114 GRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGS---DECDEALSILYHLNVSE-SYLKSIVINNGEEFLES 189 (407)
Q Consensus 114 ~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~---~~~~~a~~~L~~L~~~~-~~~~~~i~~~gg~~i~~ 189 (407)
.+.|+.-|..+|.+ ++.|..+.+++..--|-.+|...+.+. -.+-.++++++.|.+.+ .+...++...+ .+|.
T Consensus 73 VcnaLaLlQcvAsh-petr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tE--iipl 149 (268)
T 2fv2_A 73 VCNALALLQCVASH-PETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTE--IIPL 149 (268)
T ss_dssp HHHHHHHHHHHHHC-TTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHHcC-cchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhh--HHHH
Confidence 46788888888875 899999999998888888887766532 24677888888877644 34456666565 9999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhh-------hHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 190 LMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQE-------FFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 190 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
..+.++.|+.-.|.-|+-++..+..++..-..+..... ++..+|.-+... .++...+...++-..|+.++.
T Consensus 150 CLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~--ps~RLLKhiircYlRLsdn~r 227 (268)
T 2fv2_A 150 CLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKE--PSARLLKHVVRCYLRLSDNPR 227 (268)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTS--CCHHHHHHHHHHHHHHTTSHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHhcCHH
Confidence 99999999999999999999999877765555544322 233333323222 388999999999999998887
Q ss_pred hHHHHHh
Q 040073 263 NRIKAVE 269 (407)
Q Consensus 263 n~~~~v~ 269 (407)
.+..+..
T Consensus 228 ar~aL~~ 234 (268)
T 2fv2_A 228 AREALRQ 234 (268)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776654
No 162
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.88 E-value=0.082 Score=47.98 Aligned_cols=191 Identities=13% Similarity=0.049 Sum_probs=112.5
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCch----hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF----QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR 262 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~ 262 (407)
+| |-..|.+.++..|..|...|..+....... ..+.......+.+-..+.+. +..++..++.+|..++..-.
T Consensus 12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds---N~~v~~~al~~l~~~~~~~~ 87 (278)
T 4ffb_C 12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS---NVVAQEQAIVALNSLIDAFA 87 (278)
T ss_dssp CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS---SHHHHHHHHHHHHHHHTTCC
T ss_pred CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHhh
Confidence 55 568888999999999999988765432111 01111112345566778777 99999999999998875321
Q ss_pred ----hHH--HHHhcCchHHHHHH-hhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHH
Q 040073 263 ----NRI--KAVEGGGVSVLVDL-LLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAV 335 (407)
Q Consensus 263 ----n~~--~~v~~G~v~~Lv~l-L~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~ 335 (407)
.+. ...-...+|.|++- |.+. ...+++.+..+|..++........+ +..++..+.+.++..+..++
T Consensus 88 ~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~~~~~~~~------~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 88 SSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGLDTSITQS------VELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHTSSSSHHH------HHHHGGGGGCSCHHHHHHHH
T ss_pred hhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhcCcHHHH------HHHHHHHHhccCHHHHHHHH
Confidence 111 12223467888876 5554 5677888888877765422111111 12233334445688888888
Q ss_pred HHHHHHhccCCchHH-HHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 336 RILCSVCKFSATARV-LQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 336 ~~L~~l~~~~~~~~~-~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
..|..+....+...+ ....+. ..++.+..++. +.++.+|..|..++--+-++.
T Consensus 161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~-d~~~~VR~aA~~l~~~ly~~~ 214 (278)
T 4ffb_C 161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAG-HGDRNVRSQTMNLIVEIYKVT 214 (278)
T ss_dssp HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHT-CSSHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHh
Confidence 888877643211100 111111 23344555565 669999999999887766543
No 163
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.41 Score=43.28 Aligned_cols=185 Identities=12% Similarity=0.055 Sum_probs=114.2
Q ss_pred HHHHhcCCC-hHHHHHHHHHHHHhhhChhH--HHHHH-hcC-cHHHHHHHhhccCCCCchHHHHHHHHHhcCCCh--h--
Q 040073 103 ILNDAKKSP-STGRKCLRRLRSITLQSERN--RSCLE-AAG-AIEFLATIITKSDAGSDECDEALSILYHLNVSE--S-- 173 (407)
Q Consensus 103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~--r~~i~-~~G-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~--~-- 173 (407)
+-.+|.+.+ ..|..|++.|..+....+.. ..... ..+ .++.+...+.+... .++..++.+|..++..- .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~--~v~~~al~~l~~~~~~~~~~~~ 91 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNV--VAQEQAIVALNSLIDAFASSSL 91 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSH--HHHHHHHHHHHHHHTTCC---C
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchH--HHHHHHHHHHHHHHHHhhhhhc
Confidence 456777776 99999999999987653221 11111 122 34555566654333 45778888777654311 0
Q ss_pred HHHhHhhccchhhHHHHHHH-HhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRV-LKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
.........+ ..++.|+.- |.++...++..|..++..+....... ..+++.++..+++. ++.++..++.
T Consensus 92 ~~~~~~~~~~-~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~------~~~~e~l~~~l~~K---npkv~~~~l~ 161 (278)
T 4ffb_C 92 KNAHNITLIS-TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI------TQSVELVIPFFEKK---LPKLIAAAAN 161 (278)
T ss_dssp CHHHHHHHHH-HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS------HHHHHHHGGGGGCS---CHHHHHHHHH
T ss_pred ccchhHHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhcc---CHHHHHHHHH
Confidence 0111111112 267777764 77778889999999988876443221 12456677778888 9999999998
Q ss_pred HHHHhCCC----CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 253 LLVELCPW----GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 253 aL~~L~~~----~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.|..+... .-+....+. .+++.+..+|.+. +.++++.|..++..+-.
T Consensus 162 ~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 162 CVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHH
Confidence 88876542 112222222 2456677778776 89999999999988865
No 164
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=95.81 E-value=0.0068 Score=56.74 Aligned_cols=64 Identities=13% Similarity=0.189 Sum_probs=52.4
Q ss_pred cccCccccccCcCceec-CCccc--ccHHHHHHHHhcCCCCCCccccccccccCCCCCCccHHHHHHHHH
Q 040073 9 HFLCPISLQLMRDPVTV-STGIT--YDRVNIERWLFTCKNNTCPVTKQVLQETDLTSTTPNHTLRRLIQA 75 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~-~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~~~~~~~~~l~~n~~l~~~I~~ 75 (407)
.+.|||+...|+.|+.. .|.|. ||.....+...+.+...||+|++.+... +|.....+.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~---dL~ID~~~~~IL~~ 281 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYE---SLILDGLFMEILND 281 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGG---GEEEBHHHHHHHTT
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHH---HeEEcHHHHHHHHh
Confidence 47999999999999966 59999 9999988887766678999999988764 77777767666543
No 165
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=95.76 E-value=0.14 Score=46.18 Aligned_cols=179 Identities=10% Similarity=0.073 Sum_probs=109.8
Q ss_pred HHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcC-cHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-hhHHHhHh
Q 040073 103 ILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAG-AIEFLATIITKSDAGSDECDEALSILYHLNVS-ESYLKSIV 179 (407)
Q Consensus 103 ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G-~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~-~~~~~~~i 179 (407)
+...+.+.+ ..+.+|+..|......+++ ..+.... .++.+.--+.+.+ ..+...++.+|..+... .+..-.+.
T Consensus 51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~--~~~~~lDll~kw~~lr~~d~N--~~v~~~~L~~L~~l~~~l~~~~y~~~ 126 (266)
T 2of3_A 51 LMSQLFHKDFKQHLAALDSLVRLADTSPR--SLLSNSDLLLKWCTLRFFETN--PAALIKVLELCKVIVELIRDTETPMS 126 (266)
T ss_dssp HHHHHTCSCHHHHHHHHHHHHHHHHHCHH--HHHHTHHHHHHHHHHHTTSCC--HHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHhhhChH--HHHHHHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHhccccch
Confidence 334445556 7778889888887655432 2222211 1222221112222 23455555555543210 00000111
Q ss_pred h-ccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 180 I-NNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 180 ~-~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
. +.+ .++|.|+.-+......+|+.+-.++..+.... -...+++.+++-+++. |...+...+..|..+-
T Consensus 127 ~~ea~-~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksK---N~R~R~e~l~~l~~li 195 (266)
T 2of3_A 127 QEEVS-AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSK---NARQRSECLLVIEYYI 195 (266)
T ss_dssp HHHHH-HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCS---CHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccC---CHHHHHHHHHHHHHHH
Confidence 1 112 37899999998888889999999998876432 2234677788888888 9999999998888875
Q ss_pred CCCchHHHHHhcCch---HHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 259 PWGRNRIKAVEGGGV---SVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 259 ~~~~n~~~~v~~G~v---~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
....-. ...++ +.+.+++.+. +..+++.|+.++..+-.
T Consensus 196 ~~~G~~----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 196 TNAGIS----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHHCSG----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred HhcCCC----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 422111 23468 9999999886 88999999999886654
No 166
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=95.38 E-value=0.8 Score=42.12 Aligned_cols=169 Identities=12% Similarity=-0.008 Sum_probs=99.0
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHH-HHhhccC--CCCchHHHHHHHHHhcCCChh
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLA-TIITKSD--AGSDECDEALSILYHLNVSES 173 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv-~lL~~~~--~~~~~~~~a~~~L~~L~~~~~ 173 (407)
...+..+.+.++=+.+.+.-++..+|.++.+ +.....+.+.+.-..++ .++.... .....+--+++++.|+-.+..
T Consensus 102 ~~~l~~l~kil~WP~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~ 180 (304)
T 3ebb_A 102 VQQLQILWKAINCPEDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQA 180 (304)
T ss_dssp HHHHHHHHHHHTSCTTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHH
T ss_pred hHHHHHHHHHHcCCHHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCch
Confidence 3444444444321216667777777777664 55555665533323333 2333211 111236778889999887776
Q ss_pred HHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 174 YLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 174 ~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
...-++.... .+++.+...+.+.+..++..++.++.|++.........-....++..+..+++.. .+.++.-.++.|
T Consensus 181 g~~~l~~~~~-~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~--~d~EalyR~LvA 257 (304)
T 3ebb_A 181 GQKLMMSQRE-SLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVV--QDLEATFRLLVA 257 (304)
T ss_dssp HHHHHHHTHH-HHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHH
T ss_pred hHHHHHHHHH-HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcc--CCHHHHHHHHHH
Confidence 4433333322 3566666666567889999999999999854211111111122445555666554 388999999999
Q ss_pred HHHhCCCCchHHHHHh
Q 040073 254 LVELCPWGRNRIKAVE 269 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~ 269 (407)
|.+|...+.....+.+
T Consensus 258 LGtL~~~~~~~~~lak 273 (304)
T 3ebb_A 258 LGTLISDDSNAVQLAK 273 (304)
T ss_dssp HHHHHTTCHHHHHHHH
T ss_pred HHHHHhCChhHHHHHH
Confidence 9999986655555554
No 167
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=95.33 E-value=0.86 Score=40.48 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=127.7
Q ss_pred hhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHh-cCcHHHHHHHhhccCC----C------CchHHHHHHHHH
Q 040073 98 TQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEA-AGAIEFLATIITKSDA----G------SDECDEALSILY 166 (407)
Q Consensus 98 ~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~-~G~i~~Lv~lL~~~~~----~------~~~~~~a~~~L~ 166 (407)
..+-.++..|..+ +.|..|+.+|..--..-++.-..+=. -|.+..|++=+-+-.+ + ..-..+|+..|.
T Consensus 3 ~~i~qli~~L~~p-~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQ 81 (268)
T 2fv2_A 3 EKIYQWINELSSP-ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQ 81 (268)
T ss_dssp HHHHHHHHHTSST-TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc-hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHH
Confidence 3456677777766 67888888777653332333333333 5777777655533221 0 012578888888
Q ss_pred hcCCChhHHHhHhhccchhhHHHHHHHHhcCC-----hhHHHHHHHHHHHhhccCCchh-hhhchhhhHHHHHHHcccCC
Q 040073 167 HLNVSESYLKSIVINNGEEFLESLMRVLKCGN-----YQSRSYAIMLLKSIFEVADPFQ-LISVKQEFFTEIVNVLRDHH 240 (407)
Q Consensus 167 ~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~g~i~~Lv~lL~~~~ 240 (407)
-++.+.+....++. ++ ..--|--.|+..+ ...|..+..+++.|...++.-. ......++||..++.++.|
T Consensus 82 cvAshpetr~~Fl~-a~--iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G- 157 (268)
T 2fv2_A 82 CVASHPETRSAFLA-AH--IPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG- 157 (268)
T ss_dssp HHHHCTTTHHHHHH-TT--GGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-
T ss_pred HHHcCcchhhHHHH-cc--chHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-
Confidence 88888775555554 44 3334445565432 3467888999999987655322 2233467999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCchHHHHHh--------cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHh
Q 040073 241 QFSQQASKAALKLLVELCPWGRNRIKAVE--------GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLK 311 (407)
Q Consensus 241 ~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--------~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~ 311 (407)
+.-.+..|.-.+..+-.++.+-.-+.. ..++..++.-+...++..+....+.+-..|+.++..|.++..
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~ 234 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQ 234 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888888777776655543222211 012333333333333667777888888888888877777654
No 168
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=94.72 E-value=0.025 Score=50.34 Aligned_cols=47 Identities=15% Similarity=0.323 Sum_probs=37.9
Q ss_pred ccCccccccCcCceecC-CcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 10 FLCPISLQLMRDPVTVS-TGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~-~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
..|.||.++..-=+.-+ ||+.|-+.|+.+|++..+...||.|+....
T Consensus 181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~ 228 (238)
T 3nw0_A 181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 228 (238)
T ss_dssp CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence 47999999887554443 899999999999998655679999988753
No 169
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.67 E-value=0.91 Score=48.73 Aligned_cols=261 Identities=10% Similarity=0.066 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc----CCCCchHHHHHHHHHhcCCChhHHHhHhhc---cchh
Q 040073 113 TGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS----DAGSDECDEALSILYHLNVSESYLKSIVIN---NGEE 185 (407)
Q Consensus 113 ~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~----~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~---~gg~ 185 (407)
.|..|...|..++..-+ +.+.. -.++.+-+.|... ...-..++.|+.++..++.+......-+.. .- .
T Consensus 377 ~R~aa~~~L~~l~~~~~---~~v~~-~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~-~ 451 (960)
T 1wa5_C 377 RRRACTDFLKELKEKNE---VLVTN-IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL-N 451 (960)
T ss_dssp HHHHHHHHHHHHHHHCH---HHHHH-HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC-C
T ss_pred cHHHHHHHHHHHHHHcc---hhHHH-HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc-c
Confidence 44556667777765532 11110 1233333444421 111123788888888876421101100000 00 0
Q ss_pred hHHH----HHHHHhcC---ChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhC
Q 040073 186 FLES----LMRVLKCG---NYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELC 258 (407)
Q Consensus 186 ~i~~----Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~ 258 (407)
..+. ++..|.+. .+-+|..|+++|..++..-. ... ...+++.+++.|.+. +..++..|+.||.+++
T Consensus 452 l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~--~~~--l~~~l~~l~~~L~d~---~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 452 VVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT--KAQ--LIELMPILATFLQTD---EYVVYTYAAITIEKIL 524 (960)
T ss_dssp HHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC--HHH--HHHHHHHHHHHTTCS---CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC--HHH--HHHHHHHHHHHhCCC---ChhHHHHHHHHHHHHH
Confidence 2232 33345555 78899999999999976421 122 235788899999877 8999999999999998
Q ss_pred CCCc---------hHHHHHh--cCchHHHHHHhhccc----chhHHHHHHHHHHHHhcCH-hhHHHHHhccCchHHHHHH
Q 040073 259 PWGR---------NRIKAVE--GGGVSVLVDLLLDVT----ERRVCELMLNVLDLLCRCA-EGRAELLKHGAGLAVVSKK 322 (407)
Q Consensus 259 ~~~~---------n~~~~v~--~G~v~~Lv~lL~~~~----~~~~~~~al~~L~~L~~~~-~~r~~i~~~~g~i~~Lv~~ 322 (407)
...+ .+..+.. ...++.|+.++.... .....+.++.+|..++..- +.-..... ..++.|+..
T Consensus 525 ~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~ 602 (960)
T 1wa5_C 525 TIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEI 602 (960)
T ss_dssp TCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHH
T ss_pred hcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH
Confidence 7421 2332322 234455555555420 0112356666666654421 11111111 133444544
Q ss_pred HHcC-----CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhc
Q 040073 323 ILRV-----SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAW 390 (407)
Q Consensus 323 l~~~-----s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~ 390 (407)
+... ++......+.+|..+......+ ... ......++.+..+|+.+ .....+.+..++..+-+..
T Consensus 603 l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~-~~~-~~~~~~~p~~~~iL~~~-~~~~~~~~~~i~~~l~~~~ 672 (960)
T 1wa5_C 603 VTIMAKNPSNPRFTHYTFESIGAILNYTQRQ-NLP-LLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQS 672 (960)
T ss_dssp HHHHTTSCCCHHHHHHHHHHHHHHHHTSCGG-GHH-HHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHhcCCcc-hHH-HHHHHHHHHHHHHHHhh-hHhhHHHHHHHHHHHHHhc
Confidence 4331 2345566788888877652211 222 22345778888888754 3455666777776665543
No 170
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=94.50 E-value=0.8 Score=42.14 Aligned_cols=202 Identities=16% Similarity=0.126 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccc-h-hhHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNG-E-EFLES 189 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~g-g-~~i~~ 189 (407)
+.+..++..|.......... ......+..|.+++ ..... .+--++.+++.+..+... ...+.+.+ | ..+..
T Consensus 79 ~~el~~L~~l~~~l~~~s~~---~~~~~~l~~l~kil-~WP~~--~~fPvLDLlRl~~l~p~~-~~~~~~~~~~~~l~~~ 151 (304)
T 3ebb_A 79 EDDLILLEKILSLICNSSSE---KPTVQQLQILWKAI-NCPED--IVFPALDILRLSIKHPSV-NENFCNEKEGAQFSSH 151 (304)
T ss_dssp HHHHHHHHHHHHHHHTTCSS---CCCHHHHHHHHHHH-TSCTT--TCHHHHHHHHHHTTSHHH-HHHHHSTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCC---ccchHHHHHHHHHH-cCCHH--hHHHHHHHHHHHHcCccH-HHHhhccccchHHHHH
Confidence 55566666665543321100 01112357777777 44432 266777788877776643 34444322 1 02222
Q ss_pred HHHHHhc-CChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC---chH
Q 040073 190 LMRVLKC-GNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG---RNR 264 (407)
Q Consensus 190 Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~---~n~ 264 (407)
+...+.. +++..+.-+.+++.|+-.....+..+.. ...+++.+...+... +..++.+++..++|++... ...
T Consensus 152 l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~---nknl~iA~ATl~~NlAv~~~~~~~~ 228 (304)
T 3ebb_A 152 LINLLNPKGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGS---NKNIHIALATLALNYSVCFHKDHNI 228 (304)
T ss_dssp HHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSC---CHHHHHHHHHHHHHHHHHHHHSCCH
T ss_pred HHHhcCCCCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCC---ChhHHHHHHHHHHHHHHHHhhcCCc
Confidence 3333332 3566788999999999877666554443 223555555555555 8899999999999998731 111
Q ss_pred HHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC
Q 040073 265 IKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV 326 (407)
Q Consensus 265 ~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~ 326 (407)
.. ..-.+..+.+++....+.+..-.++.+|.+|...+....++... -++...++.+.+.
T Consensus 229 ~~--~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~-l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 229 EG--KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKS-LGVDSQIKKYSSV 287 (304)
T ss_dssp HH--HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHGGGGGGC
T ss_pred hH--HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHH-cCHHHHHHHHHhC
Confidence 11 11134444555554447788899999999998765444455543 3556556655554
No 171
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=93.42 E-value=5.4 Score=37.82 Aligned_cols=190 Identities=15% Similarity=0.129 Sum_probs=116.3
Q ss_pred HHHHHhcCCC--hHHHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccC---------CCCchHHHHHHHHHhcC
Q 040073 102 KILNDAKKSP--STGRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSD---------AGSDECDEALSILYHLN 169 (407)
Q Consensus 102 ~ll~~L~~~~--~~~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~---------~~~~~~~~a~~~L~~L~ 169 (407)
..+..|.+.. +...+.+..|+.-.+.+ ......+. .+|+..|+.+|..-. .....+...+..|..+.
T Consensus 70 ~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm 148 (383)
T 3eg5_B 70 MYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM 148 (383)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh
Confidence 3455555443 22234566666544443 34445555 678999999996421 11123567778888888
Q ss_pred CChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhch---------hhhHHHHHHHcc
Q 040073 170 VSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISVK---------QEFFTEIVNVLR 237 (407)
Q Consensus 170 ~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~~---------~g~i~~Lv~lL~ 237 (407)
.+..+...++.... .+..|+..|.+.++.++..+..+|..++...+ + ...+..+ ..-+..+|..|+
T Consensus 149 N~~~G~~~vl~~~~--~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEE--GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSS--HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred cchhhHHHHHcChH--HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777655 79999999999999999999999999887654 2 3222211 112566788887
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHH
Q 040073 238 DHHQFSQQASKAALKLLVELCPWGR-------NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDL 298 (407)
Q Consensus 238 ~~~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~ 298 (407)
++ .+.+.+.+++..+-.+....+ -|..+...| +..+++.|....++.+ ..-+.+...
T Consensus 227 ~~--~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G-l~~il~~lr~~~~~~L-~~Qi~~fe~ 290 (383)
T 3eg5_B 227 SG--TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENEDM-KVQLCVFDE 290 (383)
T ss_dssp TT--SCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHTTSCCHHH-HHHHHHHHH
T ss_pred cc--CcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-hHHHHHHHhcCCChhH-HHHHHHHHH
Confidence 64 266777666666555655433 244445667 5555556766433333 333344443
No 172
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=93.05 E-value=4.3 Score=35.57 Aligned_cols=161 Identities=16% Similarity=0.137 Sum_probs=101.1
Q ss_pred HHHHHHHHhhh-ChhHHHHHHhcCcHHHHHHHhhccCC---------CCchHHHHHHHHHhcCCChhHHHhHhhccchhh
Q 040073 117 CLRRLRSITLQ-SERNRSCLEAAGAIEFLATIITKSDA---------GSDECDEALSILYHLNVSESYLKSIVINNGEEF 186 (407)
Q Consensus 117 al~~L~~l~~~-~~~~r~~i~~~G~i~~Lv~lL~~~~~---------~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~ 186 (407)
-+..|+...+. .....+.+ ..||+..|+.+|..... ....+...+..|..+..+..+...++...+ .
T Consensus 21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~--~ 97 (233)
T 2f31_A 21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEE--G 97 (233)
T ss_dssp HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSS--H
T ss_pred HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcH--H
Confidence 44555543333 33445555 57788999998865311 112366778888888877777777776655 7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhch---------hhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISVK---------QEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~~---------~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
+..|+..|.+.+..++..+..+|..++..++ . ...+..+ ..-+..+|+.+++. .+.+.+.+.+..+
T Consensus 98 i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~--~~~e~~~~~m~lI 175 (233)
T 2f31_A 98 ILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG--TSIALKVGCLQLI 175 (233)
T ss_dssp HHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT--SCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC--ChHHHHHHHHHHH
Confidence 9999999999999999999999998887654 3 3322211 11345577777654 2566666666555
Q ss_pred HHhCCCCc-------hHHHHHhcCchHHHHHHhhcc
Q 040073 255 VELCPWGR-------NRIKAVEGGGVSVLVDLLLDV 283 (407)
Q Consensus 255 ~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~ 283 (407)
-.+....+ -|..+...| +..+++.|+..
T Consensus 176 N~li~~~~dl~~R~~lR~ef~~~G-l~~il~~l~~~ 210 (233)
T 2f31_A 176 NALITPAEELDFRVHIRSELMRLG-LHQVLQELREI 210 (233)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHTT-HHHHHHHHHHC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhcc
Confidence 55555443 244445566 55555666553
No 173
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=92.96 E-value=11 Score=40.13 Aligned_cols=174 Identities=16% Similarity=0.158 Sum_probs=96.9
Q ss_pred CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHc---c--cCCCCCHHHHHHHHHHHHHhCCC-CchHHHHHhc
Q 040073 197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVL---R--DHHQFSQQASKAALKLLVELCPW-GRNRIKAVEG 270 (407)
Q Consensus 197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL---~--~~~~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~ 270 (407)
.+...++.|..++..++........ ..++.++.++ . +. ++.++..++++|..++.. ..+. ....
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~~-----~~l~~l~~~l~~l~~~d~---~~~vr~~a~~~l~~~~~~l~~~~-~~l~- 545 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEEK-----RQIPRLMRVLAEIPYEKL---NVKLLGTALETMGSYCNWLMENP-AYIP- 545 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTS---CHHHHHHHHHHHHHTHHHHC-----CHH-
T ss_pred CcHHHHHHHHHHHHHHHhhcChhhh-----HHHHHHHHHHHhcCcccc---CHHHHHHHHHHHHHHHHHHhcCH-HHHH-
Confidence 5778899999999999765432211 2344444433 2 33 788999999999998752 1121 1111
Q ss_pred CchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhc-cCchHHHHHHHHc--CCchhhHHHHHHHHHHhccCCc
Q 040073 271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKH-GAGLAVVSKKILR--VSHAASDRAVRILCSVCKFSAT 347 (407)
Q Consensus 271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~-~g~i~~Lv~~l~~--~s~~~~e~a~~~L~~l~~~~~~ 347 (407)
.+++.|+..| + +.++..|+.+|..++. +.+..+... ...+..+.+.+.+ .+...++....++..+....+.
T Consensus 546 ~vl~~l~~~l-~---~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~ 619 (971)
T 2x1g_F 546 PAINLLVRGL-N---SSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP 619 (971)
T ss_dssp HHHHHHHHHH-H---SSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHh-C---hHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence 2455555555 2 5789999999999995 233444332 1233444454444 2467788888898888864332
Q ss_pred hHHHHHHHHhChHHHHHHHH----hcCC-CHHHHHHHHHHHHHHHh
Q 040073 348 ARVLQEMLQVGVVSKLCLVL----QVDA-SVKTKERAREILKLNAR 388 (407)
Q Consensus 348 ~~~~~~~~~~g~i~~Ll~ll----~~~~-~~~~k~~A~~lL~~l~~ 388 (407)
++....+. ..+++++..+ +... ++..+..+...+..|..
T Consensus 620 ~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 663 (971)
T 2x1g_F 620 EEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST 663 (971)
T ss_dssp THHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence 22222221 2344444433 3222 34456666666666654
No 174
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=92.86 E-value=1.3 Score=39.71 Aligned_cols=139 Identities=14% Similarity=0.061 Sum_probs=92.9
Q ss_pred hcCChhHHHHHHHHHHHhhc---cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 195 KCGNYQSRSYAIMLLKSIFE---VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 195 ~~~~~~~~~~a~~~L~~Ls~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
.+.+..+...+..+|..+.. ..+++-.-....-++|.|+.-+.+. ...++..+-.+|..++.. .--..
T Consensus 97 ~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP~LveKlGd~---k~~vR~~~r~il~~l~~v------~~~~~ 167 (266)
T 2of3_A 97 FETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEA---KDNMRTSVRDIVNVLSDV------VGPLK 167 (266)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHGGGCS---SHHHHHHHHHHHHHHHHH------HCHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhCCC---hHHHHHHHHHHHHHHHHH------CCHHH
Confidence 35677777777777777632 2222221112234789999999887 778888877777766531 11122
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCch---HHHHHHHHcCCchhhHHHHHHHHHHhccCCch
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGL---AVVSKKILRVSHAASDRAVRILCSVCKFSATA 348 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i---~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~ 348 (407)
.++.+++-+.+. +...++.++..+..+-.. .|-. . ..++ |.+.+++.+.+..+++.|+.++..+..+.+++
T Consensus 168 v~~~l~~g~ksK-N~R~R~e~l~~l~~li~~-~G~~---~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~ 241 (266)
T 2of3_A 168 MTPMLLDALKSK-NARQRSECLLVIEYYITN-AGIS---P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ 241 (266)
T ss_dssp HHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH-HCSG---G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHccC-CHHHHHHHHHHHHHHHHh-cCCC---c-cccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHH
Confidence 456677766665 678888998888877552 2222 2 3468 88888777777889999999999888876653
No 175
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=92.07 E-value=0.87 Score=40.11 Aligned_cols=77 Identities=16% Similarity=0.291 Sum_probs=60.2
Q ss_pred cCchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073 270 GGGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC 339 (407)
Q Consensus 270 ~G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 339 (407)
.||+..|+..|..- .+......++.+|..+..+..|...+..+..++..++..|...+...+..++.+|.
T Consensus 42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~ 121 (233)
T 2f31_A 42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 121 (233)
T ss_dssp HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 45566666666531 02355678999999999999999999999888888888766556788889999999
Q ss_pred HHhccCC
Q 040073 340 SVCKFSA 346 (407)
Q Consensus 340 ~l~~~~~ 346 (407)
.+|..+.
T Consensus 122 ~lc~~~~ 128 (233)
T 2f31_A 122 ALCILPQ 128 (233)
T ss_dssp HHHTCSS
T ss_pred HHHhCCC
Confidence 9998754
No 176
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=91.66 E-value=1.4 Score=47.76 Aligned_cols=151 Identities=5% Similarity=0.018 Sum_probs=86.8
Q ss_pred CChhHHHHHHHHHHHhhccCCch-hhhhchhhhHHHHHHHcccCCCCCH--HHHHHHHHHHHHhCCCCchHHHHHhcCch
Q 040073 197 GNYQSRSYAIMLLKSIFEVADPF-QLISVKQEFFTEIVNVLRDHHQFSQ--QASKAALKLLVELCPWGRNRIKAVEGGGV 273 (407)
Q Consensus 197 ~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~--~~~~~A~~aL~~L~~~~~n~~~~v~~G~v 273 (407)
.++..++.++.+++.++...... ..-.. ..+++.|++++......++ .++..++++|...+..-.... ..+
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~-----~~L 538 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-----NFL 538 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCH-----HHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccH-----HHH
Confidence 47999999999999998765432 21222 3578889998874200012 233355567665544211111 234
Q ss_pred HHHHHHhhcc---cchhHHHHHHHHHHHHhcCHhhHHHHHh-c----cCchHHHHHHH----HcCCchhhHHHHHHHHHH
Q 040073 274 SVLVDLLLDV---TERRVCELMLNVLDLLCRCAEGRAELLK-H----GAGLAVVSKKI----LRVSHAASDRAVRILCSV 341 (407)
Q Consensus 274 ~~Lv~lL~~~---~~~~~~~~al~~L~~L~~~~~~r~~i~~-~----~g~i~~Lv~~l----~~~s~~~~e~a~~~L~~l 341 (407)
++++..|..+ +.+.+++.|+++|..||.. .+..+.. . .--++.++..+ .+...........++..+
T Consensus 539 ~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~--c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~v 616 (1023)
T 4hat_C 539 RTVILKLFEFMHETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGII 616 (1023)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHH--HHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5544444432 1467999999999999973 2333331 0 01234443333 234566677788888888
Q ss_pred hccCCchHHHHHHH
Q 040073 342 CKFSATARVLQEML 355 (407)
Q Consensus 342 ~~~~~~~~~~~~~~ 355 (407)
....++...+.+.+
T Consensus 617 i~~~~~~~~~~~~l 630 (1023)
T 4hat_C 617 ISEERSVAERNRLL 630 (1023)
T ss_dssp HTTCCSHHHHHHHH
T ss_pred HHhCCCHhhHHHHH
Confidence 88776654344433
No 177
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=91.63 E-value=0.95 Score=43.11 Aligned_cols=115 Identities=16% Similarity=0.239 Sum_probs=80.2
Q ss_pred cCchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHH
Q 040073 270 GGGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILC 339 (407)
Q Consensus 270 ~G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~ 339 (407)
.+|+..|+.+|..- .+......++.+|..+..+..|...+..+..+|..++..|....+..+..++.+|.
T Consensus 108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~ 187 (383)
T 3eg5_B 108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS 187 (383)
T ss_dssp HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 55677888777531 12356678999999999999999999999999999998776667888999999999
Q ss_pred HHhccCC--c-hHHHHHHHH-------hChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 340 SVCKFSA--T-ARVLQEMLQ-------VGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 340 ~l~~~~~--~-~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
.+|..+. + .+..-+++. ..-+..++..|....+...+..+-.++.
T Consensus 188 ~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN 242 (383)
T 3eg5_B 188 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLIN 242 (383)
T ss_dssp HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHH
T ss_pred HHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHH
Confidence 9998764 2 333333322 2347777777775444444444433333
No 178
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=90.88 E-value=19 Score=38.38 Aligned_cols=178 Identities=10% Similarity=0.140 Sum_probs=99.4
Q ss_pred chHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC---------chhhhhc-h
Q 040073 156 DECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD---------PFQLISV-K 225 (407)
Q Consensus 156 ~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---------~~~~i~~-~ 225 (407)
.++..|+++|..++..- ..+.+. . +++.++..|.+.+..++..|+.+|.+++...+ ....+.- .
T Consensus 473 ~vr~~a~~~lg~~~~~~--~~~~l~--~--~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l 546 (960)
T 1wa5_C 473 ILRVDAIKYIYTFRNQL--TKAQLI--E--LMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNST 546 (960)
T ss_dssp HHHHHHHHHHHHTGGGS--CHHHHH--H--HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTH
T ss_pred eehHHHHHHHHHHHhhC--CHHHHH--H--HHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhH
Confidence 46899999999877532 122322 1 68888999988889999999999999986422 1222211 1
Q ss_pred hhhHHHHHHHcccCCCCCHH--HHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhc----ccchhHHHHHHHHHHH
Q 040073 226 QEFFTEIVNVLRDHHQFSQQ--ASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLD----VTERRVCELMLNVLDL 298 (407)
Q Consensus 226 ~g~i~~Lv~lL~~~~~~~~~--~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~----~~~~~~~~~al~~L~~ 298 (407)
...+..|+.+++..++.... ....++.+|..++.. .+.-...+. ..++.|+..+.. ..++.....++.+|..
T Consensus 547 ~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~ 625 (960)
T 1wa5_C 547 EILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA 625 (960)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 34666667777653000011 223455555554331 111111111 144555555533 2245566667777777
Q ss_pred HhcC--HhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 299 LCRC--AEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 299 L~~~--~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
++.. ++....+.. ..+|.+...|........+.+..++..+.
T Consensus 626 l~~~~~~~~~~~~~~--~~~p~~~~iL~~~~~~~~~~~~~i~~~l~ 669 (960)
T 1wa5_C 626 ILNYTQRQNLPLLVD--SMMPTFLTVFSEDIQEFIPYVFQIIAFVV 669 (960)
T ss_dssp HHHTSCGGGHHHHHH--HHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHH--HHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 7654 333334433 35677777665544556666777666554
No 179
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=90.52 E-value=0.35 Score=35.08 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=36.2
Q ss_pred ccCccccccC-----cCceecC--CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLM-----RDPVTVS--TGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~-----~dPv~~~--~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
-.|.||++-. -+|.+.+ |+...||.|.+-=.++ |+..||.|+.++..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke-G~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE-GTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT-SCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc-cCccccccCCcccc
Confidence 4899998642 2355553 8999999999987765 59999999988753
No 180
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=90.49 E-value=4.6 Score=37.59 Aligned_cols=117 Identities=9% Similarity=0.106 Sum_probs=83.6
Q ss_pred HHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccC
Q 040073 160 EALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDH 239 (407)
Q Consensus 160 ~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~ 239 (407)
.+...|.. -.++.+..+=+...+| +..+..+.+..+.+........|...+....-+. .-. ...+|.++..++-.
T Consensus 262 R~FDLL~L-LmHdSnAIDGFVk~DG--v~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~-t~L-~e~LPFi~~~i~~h 336 (619)
T 3c2g_A 262 RTFDLLGL-LLHDSDAIDGFVRSDG--VGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK-TPL-ENILPFLLRLIEIH 336 (619)
T ss_dssp HHHHHHHH-HCCSHHHHHHHHHTTH--HHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT-SCC-TTHHHHHHHHHHHC
T ss_pred HHHHHHHH-Hhcccccccceeeccc--ceeEEEEeecCCcHHHHhhhheeeeecchHHHhh-ccc-cccchHHHHHhccC
Confidence 34444444 4455444444444553 8889999999999999999999998865433322 222 35789999888743
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhcc
Q 040073 240 HQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLDV 283 (407)
Q Consensus 240 ~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~~ 283 (407)
.++++.-.+.+.|.|...+.. -+...+..|+|+.|-..+...
T Consensus 337 --~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky 379 (619)
T 3c2g_A 337 --PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKY 379 (619)
T ss_dssp --CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred --CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhC
Confidence 289999999999999988765 555667899999999887653
No 181
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=90.46 E-value=7.9 Score=41.19 Aligned_cols=175 Identities=13% Similarity=0.112 Sum_probs=104.1
Q ss_pred hcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcc---cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcC
Q 040073 195 KCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLR---DHHQFSQQASKAALKLLVELCPWGRNRIKAVEGG 271 (407)
Q Consensus 195 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G 271 (407)
.+.+...++.+..++..++....... ...++.++..+. ++ ++.++..++++|..++..-........ .
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~---~~~vr~~~~~~l~~~~~~l~~~~~~l~-~ 529 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISIS---NVQLADTVMFTIGALSEWLADHPVMIN-S 529 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCC---SHHHHHHHHHHHHHTHHHHHHCHHHHT-T
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCC---cHHHHHHHHHHHHHHHHHHHhCHHHHH-H
Confidence 34577889999999999986543211 123455555442 34 678999999999988753111123333 5
Q ss_pred chHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHH----HHHHc--CCchhhHHHHHHHHHHhccC
Q 040073 272 GVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVS----KKILR--VSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 272 ~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv----~~l~~--~s~~~~e~a~~~L~~l~~~~ 345 (407)
+++.|+..|.+ +.++..|+.+|..++.. .+..+.. .++.++ ..+.+ .+...++....++..+....
T Consensus 530 vl~~l~~~l~~---~~V~~~A~~al~~l~~~--~~~~l~p---~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 530 VLPLVLHALGN---PELSVSSVSTLKKICRE--CKYDLPP---YAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp THHHHHHHTTC---GGGHHHHHHHHHHHHHH--TGGGCTT---THHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCC---chHHHHHHHHHHHHHHH--HHHHHHh---hHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 78888888743 68899999999999852 2222221 234443 33333 24567888888888888654
Q ss_pred CchHHHHHHHHhChHHHHHHHHh----cCCCHHHHHHHHHHHHHHHh
Q 040073 346 ATARVLQEMLQVGVVSKLCLVLQ----VDASVKTKERAREILKLNAR 388 (407)
Q Consensus 346 ~~~~~~~~~~~~g~i~~Ll~ll~----~~~~~~~k~~A~~lL~~l~~ 388 (407)
+.+ .....+ ...++++...++ .+.++..+.....++..|..
T Consensus 602 ~~~-~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ 646 (963)
T 2x19_B 602 QVE-EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN 646 (963)
T ss_dssp CHH-HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred CHH-HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 311 222222 234555544443 22366666666666655543
No 182
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.32 E-value=1.1 Score=37.15 Aligned_cols=79 Identities=13% Similarity=0.155 Sum_probs=62.6
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..+.+.|...++..+-.|+.+|-.+.++++. .+..++.+...+..|+.++.....+.+|+++..+++.-...+...|
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~-~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 131 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGK-IFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQKDP 131 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCH-HHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH-HHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcCCc
Confidence 345677777777888999999999999988765 4777777788899999988754678999999999988777655554
No 183
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=89.63 E-value=13 Score=34.42 Aligned_cols=192 Identities=14% Similarity=0.156 Sum_probs=126.5
Q ss_pred HHHHHhcCCC-hHHHHHHHHHHHHhhhChhH----HHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 102 KILNDAKKSP-STGRKCLRRLRSITLQSERN----RSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 102 ~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~----r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
.|+..|..=+ +.+..+......+.+..... .+.+.. --+.|.-++...+.+ +.--.+=..|.....++. ..
T Consensus 82 ~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~--~peil~~L~~gYe~~-diAl~~G~mLRecir~e~-la 157 (341)
T 1upk_A 82 TLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICT--QQNILFMLLKGYESP-EIALNCGIMLRECIRHEP-LA 157 (341)
T ss_dssp HHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHT--CTHHHHHHHHGGGST-TTHHHHHHHHHHHHTSHH-HH
T ss_pred HHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHc--CHHHHHHHHHhhccc-hhHhHHHHHHHHHHHhHH-HH
Confidence 3444444444 66777776666666554322 223332 233333344333332 234455557777777665 44
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch-hhhh--chhhhHHHHHHHcccCCCCCHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF-QLIS--VKQEFFTEIVNVLRDHHQFSQQASKAALKL 253 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~--~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~a 253 (407)
+++...+ .+..+....+.++-++...|..++..|...+..- .... ....++...-.+|.++ +--.++.++..
T Consensus 158 ~~iL~~~--~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~---NYVTkRQSlKL 232 (341)
T 1upk_A 158 KIILWSE--QFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE---NYVTKRQSLKL 232 (341)
T ss_dssp HHHHHSG--GGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS---SHHHHHHHHHH
T ss_pred HHHhccH--HHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC---cchhHHHHHHH
Confidence 5555554 5778889999999999999999999886543321 1111 1234666677889888 99999999999
Q ss_pred HHHhCCCCchHHHHHh----cCchHHHHHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 254 LVELCPWGRNRIKAVE----GGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 254 L~~L~~~~~n~~~~v~----~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
|..|-.+..|...|.. ..-+..++.+|++. +..++-+|..+......++
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP 285 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP 285 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence 9999998888777654 24677888888887 8899999999888765544
No 184
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=88.95 E-value=18 Score=35.20 Aligned_cols=133 Identities=14% Similarity=0.128 Sum_probs=94.7
Q ss_pred hhhHHHHHHHhcCCChHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHH
Q 040073 97 KTQIVKILNDAKKSPSTGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESYLK 176 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~ 176 (407)
......++...+++...+.-|.+-|....++=|+..+. +|..++.+.++.+. .++.+|+..|-.+|.+ +
T Consensus 28 ~~~y~~Il~~~kg~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~--~IR~qaik~Lp~~ck~-~--- 96 (507)
T 3u0r_A 28 KDAYQVILDGVKGGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDV--SIRRQAIKELPQFATG-E--- 96 (507)
T ss_dssp HHHHHHHHHGGGSCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSH--HHHHHHHHHGGGGCCT-T---
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccH--HHHHHHHHhhHHHhhh-h---
Confidence 44555666655665566777888888887776665554 46777888887665 4699999999999976 2
Q ss_pred hHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 177 SIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 177 ~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
.+. ++...|+++|+..+.......-.+|..|...+. .|.+..|..-+.++ +..+++..+..|..
T Consensus 97 -~i~----kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp--------k~tl~~lf~~i~~~---~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 97 -NLP----RVADILTQLLQTDDSAEFNLVNNALLSIFKMDA--------KGTLGGLFSQILQG---EDIVRERAIKFLST 160 (507)
T ss_dssp -CHH----HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHS---CHHHHHHHHHHHHH
T ss_pred -hhh----hHHHHHHHHHhccchHHHHHHHHHHHHHHhcCh--------HHHHHHHHHHHccc---chHHHHHHHHHHHH
Confidence 132 257789999999888888888888888765432 24566666666666 78888888887764
No 185
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=88.73 E-value=27 Score=37.08 Aligned_cols=215 Identities=13% Similarity=0.032 Sum_probs=117.0
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHH---h--cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHH
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVL---K--CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTE 231 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL---~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~ 231 (407)
.++.|+.++..++..-.... .. .++.++.++ . ..++.++..++++|..++..-....... ..+++.
T Consensus 480 ~~eaal~~l~~iae~~~~~~-----~~--~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~ 550 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE-----KR--QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINL 550 (971)
T ss_dssp HHHHHHHHHHHTTTC-----------C--HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHH
T ss_pred HHHHHHHHHHHHHhhcChhh-----hH--HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHH
Confidence 48889889988876543211 11 345554444 2 2378899999999999875422221111 246777
Q ss_pred HHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh--cCchHHHHHHhhccc-chhHHHHHHHHHHHHhcC--HhhH
Q 040073 232 IVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE--GGGVSVLVDLLLDVT-ERRVCELMLNVLDLLCRC--AEGR 306 (407)
Q Consensus 232 Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~--~G~v~~Lv~lL~~~~-~~~~~~~al~~L~~L~~~--~~~r 306 (407)
|+..|. . .++..|+.+|.+++.. .+..+.. ...+..|.+++..+. +...+..++.++..++.. ++.+
T Consensus 551 l~~~l~-~-----~v~~~A~~al~~l~~~--~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~ 622 (971)
T 2x1g_F 551 LVRGLN-S-----SMSAQATLGLKELCRD--CQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEI 622 (971)
T ss_dssp HHHHHH-S-----SCHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHH
T ss_pred HHHHhC-h-----HHHHHHHHHHHHHHHH--HHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHH
Confidence 777663 3 4688999999999852 2333332 234555556665531 456777778888777653 2444
Q ss_pred HHHHhccCchHHHHHHHHcC------CchhhHHHHHHHHHHhcc---CCch-----------HHHHHHHHhChHHHHHHH
Q 040073 307 AELLKHGAGLAVVSKKILRV------SHAASDRAVRILCSVCKF---SATA-----------RVLQEMLQVGVVSKLCLV 366 (407)
Q Consensus 307 ~~i~~~~g~i~~Lv~~l~~~------s~~~~e~a~~~L~~l~~~---~~~~-----------~~~~~~~~~g~i~~Ll~l 366 (407)
..... ..++.++..+... ++..+......+..++.. -... .... -.....++.+..+
T Consensus 623 ~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~i~~~l~~~ 699 (971)
T 2x1g_F 623 PKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVL-LVMQRTMPIFKRI 699 (971)
T ss_dssp HHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCH-HHHHTTHHHHHHH
T ss_pred HHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchH-HHHHHHHHHHHHH
Confidence 44333 2345555544321 222233333444443321 0000 0001 1123567777777
Q ss_pred HhcC-CCHHHHHHHHHHHHHHHhhcc
Q 040073 367 LQVD-ASVKTKERAREILKLNARAWR 391 (407)
Q Consensus 367 l~~~-~~~~~k~~A~~lL~~l~~~~~ 391 (407)
+... .++...+.|..+++.+...+.
T Consensus 700 l~~~~~~~~v~e~~~~~~~~~~~~~~ 725 (971)
T 2x1g_F 700 AEMWVEEIDVLEAACSAMKHAITNLR 725 (971)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccccHHHHHHHHHHHHHHHHhhh
Confidence 7543 367889999998888766543
No 186
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=88.42 E-value=17 Score=34.36 Aligned_cols=179 Identities=15% Similarity=0.124 Sum_probs=108.3
Q ss_pred HHHHhcCCC-hH-HHHHHHHHHHHhhhC-hhHHHHHHhcCcHHHHHHHhhccCC---------CCchHHHHHHHHHhcCC
Q 040073 103 ILNDAKKSP-ST-GRKCLRRLRSITLQS-ERNRSCLEAAGAIEFLATIITKSDA---------GSDECDEALSILYHLNV 170 (407)
Q Consensus 103 ll~~L~~~~-~~-~~~al~~L~~l~~~~-~~~r~~i~~~G~i~~Lv~lL~~~~~---------~~~~~~~a~~~L~~L~~ 170 (407)
.++.|.+.. .. -.+.+..|+...+.+ ......+. .+|+..|+.+|..... ....+...+..|..+..
T Consensus 9 yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN 87 (386)
T 2bnx_A 9 YIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN 87 (386)
T ss_dssp HHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC
Confidence 345555443 21 123455555433332 34444554 6778888888864311 11236677788888887
Q ss_pred ChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCC--c-hhhhhc---------hhhhHHHHHHHccc
Q 040073 171 SESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVAD--P-FQLISV---------KQEFFTEIVNVLRD 238 (407)
Q Consensus 171 ~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~~---------~~g~i~~Lv~lL~~ 238 (407)
+..+...++...+ ++..|+..|.+.++.++..+..+|..++..++ + ...+.. ...-+..||+.+.+
T Consensus 88 ~~~Gl~~vl~~~~--~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~ 165 (386)
T 2bnx_A 88 NKFGIKTMLETEE--GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS 165 (386)
T ss_dssp SHHHHHHHHHSSS--HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred CHHHHHHHHcCcH--HHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHc
Confidence 7777777777655 79999999988899999999999998887654 3 222211 01134557777765
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCc-------hHHHHHhcCchHHHHHHhhcccchh
Q 040073 239 HHQFSQQASKAALKLLVELCPWGR-------NRIKAVEGGGVSVLVDLLLDVTERR 287 (407)
Q Consensus 239 ~~~~~~~~~~~A~~aL~~L~~~~~-------n~~~~v~~G~v~~Lv~lL~~~~~~~ 287 (407)
. .+.+.+.+.+..+-.|....+ -|..+...| +..+++.|....++.
T Consensus 166 ~--~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~G-L~~il~~Lr~~~~~~ 218 (386)
T 2bnx_A 166 G--TSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELREIENED 218 (386)
T ss_dssp T--SCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTTCCCHH
T ss_pred C--ChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC-hHHHHHHHhccCChh
Confidence 4 266766666665555655444 245555667 555566666643433
No 187
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=88.35 E-value=4.2 Score=37.88 Aligned_cols=187 Identities=14% Similarity=0.124 Sum_probs=116.3
Q ss_pred HHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcccchhH
Q 040073 209 LKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDVTERRV 288 (407)
Q Consensus 209 L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~~~~~~ 288 (407)
|.+|..++.+...=++..+++..+-.+++-. +.++.+++...|...+....-...-. ...+|-+++.+.-.++.++
T Consensus 266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYp---N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~eDdv 341 (619)
T 3c2g_A 266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYP---NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHPDDEV 341 (619)
T ss_dssp HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSS---CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCCCHHH
T ss_pred HHHHHhcccccccceeecccceeEEEEeecC---CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCCCcce
Confidence 3445555555443333345688888888877 99999999999999876444222212 2468888888876557888
Q ss_pred HHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCc-------hhhHHHHHHHHHHhcc--------C----C---
Q 040073 289 CELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSH-------AASDRAVRILCSVCKF--------S----A--- 346 (407)
Q Consensus 289 ~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~-------~~~e~a~~~L~~l~~~--------~----~--- 346 (407)
.-...+.|.+...+...-+++.-..++|+.|-+.+.++.+ ..+..|++++++.-+. - +
T Consensus 342 vYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~ 421 (619)
T 3c2g_A 342 IYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETK 421 (619)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCC
T ss_pred EEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccc
Confidence 8999999999988766544444336889999998887632 2355566655543211 0 0
Q ss_pred --chHHHHHHH---HhChHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhccCCCCCCccc
Q 040073 347 --TARVLQEML---QVGVVSKLCLVLQVDA--SVKTKERAREILKLNARAWRDSPCVPAHL 400 (407)
Q Consensus 347 --~~~~~~~~~---~~g~i~~Ll~ll~~~~--~~~~k~~A~~lL~~l~~~~~~~~~~~~~~ 400 (407)
.+.-.+++. +-..+.+|+..|.-++ .+-.-+--..+|+.+-- ..++|.+|.+.
T Consensus 422 ~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~L-vlRTP~~Pkd~ 481 (619)
T 3c2g_A 422 TAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFIL-LLRTPFVPKDG 481 (619)
T ss_dssp CCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHH-HHTCTTSCCTT
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHH-HhcCCCCchhh
Confidence 011123333 3467778888886543 34444444445654433 23677777665
No 188
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=88.24 E-value=0.12 Score=35.25 Aligned_cols=38 Identities=8% Similarity=0.257 Sum_probs=27.5
Q ss_pred CCCCccccccccccCCCCC-CccHHH-HHHHHHHHHhccCCC
Q 040073 45 NNTCPVTKQVLQETDLTST-TPNHTL-RRLIQAWCTINACHG 84 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l-~~n~~l-~~~I~~~~~~~~~~~ 84 (407)
++.||+|++.+.+ ++ .. ...+++ |+.|+.|...++.+.
T Consensus 3 ~~~CpIs~~~m~d-PV-~~~~sG~~yer~~I~~~l~~~~~cP 42 (61)
T 2bay_A 3 HMLCAISGKVPRR-PV-LSPKSRTIFEKSLLEQYVKDTGNDP 42 (61)
T ss_dssp -CCCTTTCSCCSS-EE-EETTTTEEEEHHHHHHHHHHHSBCT
T ss_pred eEEecCCCCCCCC-CE-EeCCCCcEEcHHHHHHHHHhCCCCc
Confidence 5789999999987 53 33 234555 899999999887543
No 189
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=87.52 E-value=1.2 Score=39.02 Aligned_cols=79 Identities=19% Similarity=0.249 Sum_probs=62.3
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..|.+.|...++..+-.|+.+|-.+..+.+. .+..++.+...+..|..++.....+.+|+++.++++.........|
T Consensus 46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~-~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 124 (226)
T 3zyq_A 46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQ-TVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFRNEP 124 (226)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCH-HHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTTTCG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcch-HHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCCCc
Confidence 355677777777889999999999999887665 3677777778888888888776788999999999988777655443
No 190
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=86.82 E-value=5.7 Score=38.61 Aligned_cols=74 Identities=15% Similarity=0.206 Sum_probs=57.9
Q ss_pred cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHH
Q 040073 196 CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSV 275 (407)
Q Consensus 196 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~ 275 (407)
.|+...+..|+..|......=+. . ...+|..++++..++ +..++..|.+.|..+|.. ++..+ ++..
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~---l--~~~Ai~a~lDLcEDe---d~~IR~qaik~Lp~~ck~-~~i~k-----iaDv 104 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPE---L--ADSAINAQLDLCEDE---DVSIRRQAIKELPQFATG-ENLPR-----VADI 104 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGG---G--HHHHHHHHHHHHTCS---SHHHHHHHHHHGGGGCCT-TCHHH-----HHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChh---h--HHHHHHHHHHHHhcc---cHHHHHHHHHhhHHHhhh-hhhhh-----HHHH
Confidence 47889999999999877544332 1 135789999999998 999999999999999987 55444 4678
Q ss_pred HHHHhhcc
Q 040073 276 LVDLLLDV 283 (407)
Q Consensus 276 Lv~lL~~~ 283 (407)
|+++|...
T Consensus 105 L~QlLqtd 112 (507)
T 3u0r_A 105 LTQLLQTD 112 (507)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhcc
Confidence 89999875
No 191
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=86.19 E-value=1.7 Score=37.89 Aligned_cols=78 Identities=19% Similarity=0.215 Sum_probs=61.6
Q ss_pred hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
+..|.+.|...++..+-.|+.+|-.+..+.+. .+..++.+...+..|+.++.......+|+++.++++.-.......|
T Consensus 44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~-~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~ 121 (220)
T 1dvp_A 44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCGA-PVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFRSSD 121 (220)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCH-HHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccch
Confidence 45667777777888999999999999887654 4667777778888888888776678999999999988777655544
No 192
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=86.15 E-value=1.3 Score=44.10 Aligned_cols=153 Identities=16% Similarity=0.112 Sum_probs=102.2
Q ss_pred hhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHH
Q 040073 199 YQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVD 278 (407)
Q Consensus 199 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~ 278 (407)
..+|+.++.+|..+ .+-+.. ..++..|+..+... .-+++..++-.|..+. +--.. =.++++.++.
T Consensus 242 APVRETaAQtLGaL-~hLp~e------~~IL~qLV~~l~~~---~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~ 306 (800)
T 3oc3_A 242 APVRDAAAYLLSRI-YPLIGP------NDIIEQLVGFLDSG---DWQVQFSGLIALGYLK---EFVED--KDGLCRKLVS 306 (800)
T ss_dssp CHHHHHHHHHHHHH-TTTSCS------CCHHHHHTTGGGCS---CHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHH
T ss_pred eehHHHHHHHHHHH-HhCChh------HHHHHHHHhhcCCC---CeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHh
Confidence 45899999999998 543332 23566666666666 8999999999999991 11000 1356788888
Q ss_pred HhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHH----HHcCC--chhhHHHHHHHHHHhccCCchHHHH
Q 040073 279 LLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKK----ILRVS--HAASDRAVRILCSVCKFSATARVLQ 352 (407)
Q Consensus 279 lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~----l~~~s--~~~~e~a~~~L~~l~~~~~~~~~~~ 352 (407)
-|.+. +.+++..|+.+|.-++ .+ ..++.++.. |.+.+ ..........|..+|....+.
T Consensus 307 GL~D~-DDDVRAVAAetLiPIA-~p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---- 370 (800)
T 3oc3_A 307 LLSSP-DEDIKLLSAELLCHFP-IT----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---- 370 (800)
T ss_dssp HTTCS-SHHHHHHHHHHHTTSC-CS----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC----
T ss_pred hcCCc-ccHHHHHHHHHhhhhc-ch----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc----
Confidence 88876 8899999999999888 22 234444443 33332 234566677888888876431
Q ss_pred HHHHhChHHHHHHHHhcCCCHHHHHHHHHHHH
Q 040073 353 EMLQVGVVSKLCLVLQVDASVKTKERAREILK 384 (407)
Q Consensus 353 ~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~ 384 (407)
......+|.|--+++ +....+|+.+..+|.
T Consensus 371 -~~dp~LVPRL~PFLR-HtITSVR~AVL~TL~ 400 (800)
T 3oc3_A 371 -SIPPERLKDIFPCFT-SPVPEVRTSILNMVK 400 (800)
T ss_dssp -CCCSGGGGGTGGGGT-CSSHHHHHHHHHHTT
T ss_pred -ccChHHHHHHHhhhc-CCcHHHHHHHHHHHH
Confidence 112367888888888 557888887665543
No 193
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.47 E-value=2.3 Score=34.52 Aligned_cols=78 Identities=18% Similarity=0.161 Sum_probs=62.1
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA 389 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~ 389 (407)
++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.. ...+.+|++...+++.-...
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~-~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 127 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGK-RFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG 127 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCH-HHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence 355777778777899999999999999988775 377788888899999998863 25789999999999887776
Q ss_pred ccCC
Q 040073 390 WRDS 393 (407)
Q Consensus 390 ~~~~ 393 (407)
+...
T Consensus 128 f~~~ 131 (149)
T 3g2s_A 128 LPEE 131 (149)
T ss_dssp CTTC
T ss_pred hCCC
Confidence 5443
No 194
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=85.23 E-value=5.4 Score=37.86 Aligned_cols=109 Identities=17% Similarity=0.232 Sum_probs=72.5
Q ss_pred CchHHHHHHhhcc----------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHH
Q 040073 271 GGVSVLVDLLLDV----------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCS 340 (407)
Q Consensus 271 G~v~~Lv~lL~~~----------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~ 340 (407)
||+..|+..|..- .+......++.+|..|..+..|...+..+..++..++..|....+..+..++.+|..
T Consensus 47 ~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~a 126 (386)
T 2bnx_A 47 EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSA 126 (386)
T ss_dssp HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence 4566666665431 023556789999999999999999999999889888887655567788889999999
Q ss_pred HhccCC--c-hHHHHHHHH-------hChHHHHHHHHhcCCCHHHHHHH
Q 040073 341 VCKFSA--T-ARVLQEMLQ-------VGVVSKLCLVLQVDASVKTKERA 379 (407)
Q Consensus 341 l~~~~~--~-~~~~~~~~~-------~g~i~~Ll~ll~~~~~~~~k~~A 379 (407)
+|..+. . ....-+++. ..-+..|+..+..+.+...+..+
T Consensus 127 lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~ 175 (386)
T 2bnx_A 127 LCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGC 175 (386)
T ss_dssp HHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHH
T ss_pred HHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHH
Confidence 998764 2 222222221 23455677766544444444333
No 195
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=84.96 E-value=2.8 Score=33.60 Aligned_cols=78 Identities=13% Similarity=0.167 Sum_probs=60.6
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhccCCC
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREILKLNARAWRDSP 394 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~~~~~~~ 394 (407)
++..+.+.|...++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.. ..+.+|++...+++.....+...|
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~-~f~~evas~~Fl~el~~l~~~-~~~~Vk~kil~li~~W~~~f~~~~ 120 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGK-IFHLEVCSRDFASEVSNVLNK-GHPKVCEKLKALMVEWTDEFKNDP 120 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCH-HHHHHHhhHHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHHHhCCCC
Confidence 355677777777788899999999888887765 366677777788888888864 588999999999988777666554
No 196
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=83.84 E-value=2.1 Score=34.75 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=62.0
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA 389 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~ 389 (407)
++..+.+.|.+.++..+-.|+.+|-.+..+++. .+..++.+...+..|+.++.. .....+|+++..+++.-...
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~-~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 117 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGE-KFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW 117 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 356777778777899999999999999988765 477788888899999888763 24789999999999877766
Q ss_pred ccCCC
Q 040073 390 WRDSP 394 (407)
Q Consensus 390 ~~~~~ 394 (407)
....|
T Consensus 118 f~~~p 122 (148)
T 1mhq_A 118 FPEDI 122 (148)
T ss_dssp CTTCH
T ss_pred cCCCc
Confidence 54433
No 197
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=83.67 E-value=2.3 Score=35.49 Aligned_cols=76 Identities=20% Similarity=0.166 Sum_probs=59.8
Q ss_pred chHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHHHHHhc-----CCCHHHHHHHHHHHHHHHhh
Q 040073 315 GLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLCLVLQV-----DASVKTKERAREILKLNARA 389 (407)
Q Consensus 315 ~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll~ll~~-----~~~~~~k~~A~~lL~~l~~~ 389 (407)
++..|.+.|.+.++..+-.|+.+|-.+.++++. .+..++.+...+..|+.++.. .....+|+++..+++.-...
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~-~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~ 129 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGR-RFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA 129 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHH-HHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCH-HHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence 355677777777889999999999999987654 477788888899999998862 23689999999999877665
Q ss_pred cc
Q 040073 390 WR 391 (407)
Q Consensus 390 ~~ 391 (407)
..
T Consensus 130 f~ 131 (171)
T 1juq_A 130 LP 131 (171)
T ss_dssp CT
T ss_pred cC
Confidence 43
No 198
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=83.29 E-value=0.26 Score=29.14 Aligned_cols=15 Identities=20% Similarity=0.614 Sum_probs=11.8
Q ss_pred cccCccccccCcCce
Q 040073 9 HFLCPISLQLMRDPV 23 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv 23 (407)
-|.||+|+.-+..|-
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 489999998777763
No 199
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=82.01 E-value=6 Score=42.75 Aligned_cols=144 Identities=7% Similarity=0.075 Sum_probs=82.2
Q ss_pred hHHHHHHHHHhcCCChhH--HHhHhhccchhhHHHHHHHHhc-----CChhHHHHHHHHHHHhhccCCchhhhhchhhhH
Q 040073 157 ECDEALSILYHLNVSESY--LKSIVINNGEEFLESLMRVLKC-----GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFF 229 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~--~~~~i~~~gg~~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i 229 (407)
.+|.++++++.++.+-.. .+.++.. +++.|+.++.+ ....++..++++|+..+.--....... ..++
T Consensus 469 ~~EA~~~a~gaIa~~~~~~~e~~~l~~----vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl 542 (1023)
T 4hat_C 469 NINTLSWAIGSISGTMSEDTEKRFVVT----VIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI 542 (1023)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHH----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHH----HHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence 488999999998765422 2344432 78889998864 223344556677776554221112221 2355
Q ss_pred HHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHh------cCchHHHHHHhhcc---cchhHHHHHHHHHHHHh
Q 040073 230 TEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVE------GGGVSVLVDLLLDV---TERRVCELMLNVLDLLC 300 (407)
Q Consensus 230 ~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~------~G~v~~Lv~lL~~~---~~~~~~~~al~~L~~L~ 300 (407)
..|++.+.+. ++.++.+|++++.+||. +.+..++. .-.++.+++.+..- -+......+..++..+.
T Consensus 543 ~~L~~~l~~~---~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi 617 (1023)
T 4hat_C 543 LKLFEFMHET---HEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII 617 (1023)
T ss_dssp HHHHHHTTCS---CHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC---CHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6666666665 78999999999999996 23334432 12345554433331 13444456666666665
Q ss_pred cC---HhhHHHHHh
Q 040073 301 RC---AEGRAELLK 311 (407)
Q Consensus 301 ~~---~~~r~~i~~ 311 (407)
.. ...+...+.
T Consensus 618 ~~~~~~~~~~~~l~ 631 (1023)
T 4hat_C 618 SEERSVAERNRLLS 631 (1023)
T ss_dssp TTCCSHHHHHHHHH
T ss_pred HhCCCHhhHHHHHH
Confidence 53 233444444
No 200
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=81.75 E-value=29 Score=36.76 Aligned_cols=155 Identities=13% Similarity=0.052 Sum_probs=91.2
Q ss_pred hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccC-CCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH
Q 040073 112 STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSD-AGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL 190 (407)
Q Consensus 112 ~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L 190 (407)
..+..++..+..++...... ....++.++..|..-. +...++..+++++..++..-....+.+. . +++.|
T Consensus 464 ~~~eaal~al~~i~~~~~~~-----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l~--~--vl~~l 534 (963)
T 2x19_B 464 QHTEALLYGFQSIAETIDVN-----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMIN--S--VLPLV 534 (963)
T ss_dssp HHHHHHHHHHHHHTTSCCSS-----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHHT--T--THHHH
T ss_pred HHHHHHHHHHHHHHhhcCch-----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHHH--H--HHHHH
Confidence 55667777888777552210 1223455555553322 2234688888899887643222223332 2 78888
Q ss_pred HHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCC--chHHHH
Q 040073 191 MRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWG--RNRIKA 267 (407)
Q Consensus 191 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~--~n~~~~ 267 (407)
+..|.+ +.++..|+.++..++.... ..+.- ....+..|..++..+ ..+.+.+.....++..+...- +.....
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~-~~~~~~~~~~~eai~~i~~~~~~~~~~~~ 609 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQ-IHKTSQCMWLMQALGFLLSALQVEEILKN 609 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccC-CCChHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 888854 7899999999999985432 11211 124555566666642 135788888889998887633 333333
Q ss_pred HhcCchHHHHHHhh
Q 040073 268 VEGGGVSVLVDLLL 281 (407)
Q Consensus 268 v~~G~v~~Lv~lL~ 281 (407)
++ ..++++.+.+.
T Consensus 610 ~~-~l~~~l~~~l~ 622 (963)
T 2x19_B 610 LH-SLISPYIQQLE 622 (963)
T ss_dssp HH-HHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHH
Confidence 33 34555555543
No 201
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=80.88 E-value=5.1 Score=32.77 Aligned_cols=79 Identities=19% Similarity=0.226 Sum_probs=59.1
Q ss_pred chHHHHHHHHc-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHH-HHHHHhc--CCCHHHHHHHHHHHHHHHhhc
Q 040073 315 GLAVVSKKILR-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSK-LCLVLQV--DASVKTKERAREILKLNARAW 390 (407)
Q Consensus 315 ~i~~Lv~~l~~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~-Ll~ll~~--~~~~~~k~~A~~lL~~l~~~~ 390 (407)
++..+.+.|.+ .++..+-.|+.+|-.+.++++. .+..++.+...+.. |+.++.. +....+|+++..+++.-....
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~-~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f 132 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGH-RFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWADAF 132 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCH-HHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCH-HHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHc
Confidence 34566777753 5678889999999999988765 47777777788888 7888742 234689999999998877766
Q ss_pred cCCC
Q 040073 391 RDSP 394 (407)
Q Consensus 391 ~~~~ 394 (407)
+..|
T Consensus 133 ~~~p 136 (157)
T 1elk_A 133 RSSP 136 (157)
T ss_dssp TTCT
T ss_pred CCCc
Confidence 6554
No 202
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=80.59 E-value=68 Score=34.66 Aligned_cols=103 Identities=14% Similarity=0.005 Sum_probs=60.2
Q ss_pred hHHHHHHHHhc----CChhHHHHHHHHHHHhhc----cCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 186 FLESLMRVLKC----GNYQSRSYAIMLLKSIFE----VADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 186 ~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~----~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
.+..+..++.+ .++.+++.+..++..|.. ....+..-.. .-+...|.+.+..+ +.+-+..++++|.|+
T Consensus 392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~---~~~~~~~~LkaLGN~ 467 (1056)
T 1lsh_A 392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRA---KEEEIVLALKALGNA 467 (1056)
T ss_dssp HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTT---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcC---ChHHHHHHHHHhhcc
Confidence 45555566654 456666666666666643 2222111001 12334444555566 788889999999999
Q ss_pred CCCCchHHHHHhcCchHHHHHHhhc-----c-cchhHHHHHHHHHHHHhcC
Q 040073 258 CPWGRNRIKAVEGGGVSVLVDLLLD-----V-TERRVCELMLNVLDLLCRC 302 (407)
Q Consensus 258 ~~~~~n~~~~v~~G~v~~Lv~lL~~-----~-~~~~~~~~al~~L~~L~~~ 302 (407)
... +.++.|...+.. . ....++..|+.+|..++..
T Consensus 468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~ 508 (1056)
T 1lsh_A 468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKR 508 (1056)
T ss_dssp TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGT
T ss_pred CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhh
Confidence 752 246666666642 1 1235667888888888753
No 203
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=78.14 E-value=0.61 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=12.0
Q ss_pred CCcccCccccccCcCc
Q 040073 7 PAHFLCPISLQLMRDP 22 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP 22 (407)
|..|.||+|...|-|+
T Consensus 1 ~~k~~CpvCk~q~Pd~ 16 (28)
T 2jvx_A 1 SSDFCCPKCQYQAPDM 16 (28)
T ss_dssp CCCEECTTSSCEESSH
T ss_pred CCcccCccccccCcCh
Confidence 4568888888877666
No 204
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=74.91 E-value=27 Score=37.64 Aligned_cols=147 Identities=3% Similarity=0.003 Sum_probs=77.2
Q ss_pred CChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCC--CCHHHHHHHHHHHHHhCCCCchHHHHHhcCchH
Q 040073 197 GNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQ--FSQQASKAALKLLVELCPWGRNRIKAVEGGGVS 274 (407)
Q Consensus 197 ~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~ 274 (407)
.++..++.+..+++.++..-.....-.....+++.|+.+...... ..+-++..+++++...+..-........ .+++
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl~ 543 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVIL 543 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHH
Confidence 467889999999999875422211000012345555554332100 0223333567777766542111122222 3566
Q ss_pred HHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHH-hcc----CchHHHHHH----HHcCCchhhHHHHHHHHHHhccC
Q 040073 275 VLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELL-KHG----AGLAVVSKK----ILRVSHAASDRAVRILCSVCKFS 345 (407)
Q Consensus 275 ~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~-~~~----g~i~~Lv~~----l~~~s~~~~e~a~~~L~~l~~~~ 345 (407)
.|++.|.+. ++.++..|+.+|..++... +..+. ... .-++.++.. +.+.+.........++..+....
T Consensus 544 ~ll~~l~~~-~~~V~~~A~~al~~l~~~~--~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~ 620 (1049)
T 3m1i_C 544 KLFEFMHET-HEGVQDMACDTFIKIVQKC--KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEE 620 (1049)
T ss_dssp HHHHHTTSS-CHHHHHHHHHHHHHHHHHH--THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHHH--HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence 677777664 6899999999999999732 33333 000 123344332 22333444555666666666554
Q ss_pred Cc
Q 040073 346 AT 347 (407)
Q Consensus 346 ~~ 347 (407)
++
T Consensus 621 ~~ 622 (1049)
T 3m1i_C 621 RS 622 (1049)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 205
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=73.70 E-value=1 Score=28.59 Aligned_cols=13 Identities=23% Similarity=0.761 Sum_probs=11.3
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+.
T Consensus 26 ~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 26 QLPDDWCCPVCGV 38 (46)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCcCCCC
Confidence 5899999999984
No 206
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=72.24 E-value=61 Score=29.88 Aligned_cols=196 Identities=10% Similarity=0.050 Sum_probs=132.0
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchh-----hhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQ-----LISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPW 260 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-----~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~ 260 (407)
.+..|+..|..=+.+.|..++.+..++.......+ .+.....++..|+.-.. ++++.-.+-..|+.+..+
T Consensus 79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe-----~~diAl~~G~mLRecir~ 153 (341)
T 1upk_A 79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE-----SPEIALNCGIMLRECIRH 153 (341)
T ss_dssp HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG-----STTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc-----cchhHhHHHHHHHHHHHh
Confidence 78899999988899999999999999876543221 12222233333333332 445555566667777777
Q ss_pred CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc-CHhhHHHHHhcc--CchHHHHHHHHcCCchhhHHHHHH
Q 040073 261 GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR-CAEGRAELLKHG--AGLAVVSKKILRVSHAASDRAVRI 337 (407)
Q Consensus 261 ~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~-~~~~r~~i~~~~--g~i~~Lv~~l~~~s~~~~e~a~~~ 337 (407)
+.-.+.+...+.+-.+.+.+..+ +=++...|..++..|-. +..--.+..... -.....-++|.+.+-..+..++..
T Consensus 154 e~la~~iL~~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKL 232 (341)
T 1upk_A 154 EPLAKIILWSEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKL 232 (341)
T ss_dssp HHHHHHHHHSGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence 77777788888888888887765 66888889999986643 444344444321 122334444444567889999999
Q ss_pred HHHHhccCCchHHHHHHHH-hChHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 338 LCSVCKFSATARVLQEMLQ-VGVVSKLCLVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 338 L~~l~~~~~~~~~~~~~~~-~g~i~~Ll~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
|..+-....+..+...=+. ..-+..++.+|+ +.+...+-.|..+.|.+..
T Consensus 233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~-d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLR-DKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc-Cchhchhhhhhhheeeeee
Confidence 9999986556444444333 345666666676 5699999999999999876
No 207
>2kkx_A Uncharacterized protein ECS2156; methods development, U-box domain, structural genomics, PSI- protein structure initiative; NMR {Escherichia coli} PDB: 2kky_A
Probab=71.19 E-value=4.6 Score=29.93 Aligned_cols=53 Identities=19% Similarity=0.370 Sum_probs=38.6
Q ss_pred CCCCCCc-ccCccccccCcCceecC-Ccc-----cccHHHHHHHHhcCCCCCCccccccccc
Q 040073 3 EIEVPAH-FLCPISLQLMRDPVTVS-TGI-----TYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 3 ~~~~p~~-~~Cpi~~~~~~dPv~~~-~g~-----t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
++.-|++ +.|||++++-..=|-+. ++. -||..++.+...++ ..=|.+|.+++.
T Consensus 20 ~f~C~ee~l~CPITL~~PE~GVFvkNs~~S~VCsLyD~~Al~~Lv~~~--~~HPLSREpit~ 79 (102)
T 2kkx_A 20 RLQCPLEAIQCPITLEQPEKGIFVKNSDGSDVCTLFDAAAFSRLVGEG--LPHPLTREPITA 79 (102)
T ss_dssp TTTCCTGGGCBTTTTBCCSEEEEEEETTTTSEEEEEEHHHHHHHHHHT--CCCTTTCCCCCT
T ss_pred hccCCHHHcCCCeEEeeCCcceEEecCCCCccceecCHHHHHHHHhcC--CCCCCccCCCCH
Confidence 3444444 79999999988888664 222 39999999988763 334899888865
No 208
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=70.27 E-value=2.1 Score=32.03 Aligned_cols=39 Identities=10% Similarity=0.115 Sum_probs=27.7
Q ss_pred CCCCccccccccccCCCCCCcc-HHH-HHHHHHHHHhccCCCc
Q 040073 45 NNTCPVTKQVLQETDLTSTTPN-HTL-RRLIQAWCTINACHGI 85 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n-~~l-~~~I~~~~~~~~~~~~ 85 (407)
.+.||+|...+.+ |+ .+.-. |++ +..|+.|...+....+
T Consensus 22 ~~~CpI~~~~m~d-PV-~~~cG~htf~r~cI~~~l~~~~~cP~ 62 (98)
T 1wgm_A 22 EFLDPIMSTLMCD-PV-VLPSSRVTVDRSTIARHLLSDQTDPF 62 (98)
T ss_dssp TTBCTTTCSBCSS-EE-ECTTTCCEEEHHHHHHHTTTSCBCTT
T ss_pred hcCCcCccccccC-Ce-ECCCCCeEECHHHHHHHHHhCCCCCC
Confidence 5789999998877 54 33334 555 8999999887654433
No 209
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=69.88 E-value=1.7 Score=31.50 Aligned_cols=37 Identities=8% Similarity=0.162 Sum_probs=27.3
Q ss_pred CCCCccccccccccCCCCCCccHHH-HHHHHHHHHhccCC
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTINACH 83 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~~~~~ 83 (407)
.+.||+|...+.+ ++ .+...+++ +..|+.|...+...
T Consensus 14 ~~~CpI~~~~m~d-PV-~~~cGhtf~r~~I~~~l~~~~~c 51 (85)
T 2kr4_A 14 EFRDPLMDTLMTD-PV-RLPSGTVMDRSIILRHLLNSPTD 51 (85)
T ss_dssp TTBCTTTCSBCSS-EE-ECTTSCEEEHHHHHHHHHHCSBC
T ss_pred heECcccCchhcC-Ce-ECCCCCEECHHHHHHHHhcCCCC
Confidence 5789999998877 54 33345555 89999999876544
No 210
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=69.78 E-value=1.4 Score=29.01 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=11.4
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 32 ~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 32 DIPDDWVCPLCGV 44 (54)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCcCCCC
Confidence 5899999999985
No 211
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=69.35 E-value=1.6 Score=28.46 Aligned_cols=13 Identities=23% Similarity=0.828 Sum_probs=11.3
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 32 ~lP~dw~CP~Cg~ 44 (52)
T 1e8j_A 32 DLPDDWACPVCGA 44 (52)
T ss_dssp SSCTTCCCSSSCC
T ss_pred HCCCCCcCCCCCC
Confidence 4899999999985
No 212
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=68.97 E-value=1.7 Score=32.67 Aligned_cols=40 Identities=8% Similarity=0.148 Sum_probs=28.1
Q ss_pred CCCCccccccccccCCCCCCccHHH-HHHHHHHHHhccCCCcc
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTINACHGIE 86 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~~~~~~~~ 86 (407)
.+.||+|...+.+ |+ .+...+++ +..|+.|...+..+.+.
T Consensus 29 ~~~CpI~~~~m~d-PV-~~~cGhtf~r~~I~~~l~~~~~cP~~ 69 (100)
T 2kre_A 29 EFRDPLMDTLMTD-PV-RLPSGTIMDRSIILRHLLNSPTDPFN 69 (100)
T ss_dssp TTBCTTTCSBCSS-EE-EETTTEEEEHHHHHHHTTSCSBCSSS
T ss_pred hhCCcCccCcccC-Ce-ECCCCCEEchHHHHHHHHcCCCCCCC
Confidence 5789999998877 54 33345555 89999998866544433
No 213
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=67.43 E-value=22 Score=28.22 Aligned_cols=70 Identities=21% Similarity=0.272 Sum_probs=55.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|.++++.++..|..+|..|..+.... ..++. ..++..|+.++... ++.++...+..+...+.
T Consensus 43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas-~~Fl~el~~l~~~~---~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCS-RDFASEVSNVLNKG---HPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSS-HHHHHHHHHHHHHS---CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHhccC---CHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999988776543 23433 46888899998766 89999999988887654
No 214
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=67.03 E-value=23 Score=29.01 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=54.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|+++++.++..|..+|..|..+.... ..+.. ..++..|+.++... .++.+++.++..|..-+.
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~--~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNK--AHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTT--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccC--CCHHHHHHHHHHHHHHHH
Confidence 6777888888899999999999999998775543 23433 47889999998754 478999999888776553
No 215
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=66.92 E-value=1.4e+02 Score=31.96 Aligned_cols=223 Identities=13% Similarity=0.077 Sum_probs=129.7
Q ss_pred CCChhhHHHHHHHhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-
Q 040073 94 PVDKTQIVKILNDAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS- 171 (407)
Q Consensus 94 ~~~~~~i~~ll~~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~- 171 (407)
+++-..+..++..+.+++ +.|..|-..|..+-+. + ++...+..+|.+..+ ..++.-|+.+|.+....
T Consensus 12 ~~~~~~l~~~l~~~~~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~-~~vr~~aa~~Lk~~i~~~ 80 (1049)
T 3m1i_C 12 DLDIALLDQVVSTFYQGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTN-PQSKFIALSILDKLITRK 80 (1049)
T ss_dssp CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSC-HHHHHHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHhCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHhh
Confidence 355667777887776666 6666677777666433 3 356667777765433 33577777777764321
Q ss_pred ----hhHHHhHhhccchhhHHHHHHHHhcC-----ChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCC
Q 040073 172 ----ESYLKSIVINNGEEFLESLMRVLKCG-----NYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQ 241 (407)
Q Consensus 172 ----~~~~~~~i~~~gg~~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~ 241 (407)
+++.+..+... .+..+...-..+ +..++...+.++..++..+- ..+ .+.++.|+..++ .
T Consensus 81 W~~l~~~~~~~ir~~---ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~W-----p~ll~~L~~~~~-~-- 149 (1049)
T 3m1i_C 81 WKLLPNDHRIGIRNF---VVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNW-----PEFIPELIGSSS-S-- 149 (1049)
T ss_dssp GGGSCHHHHHHHHHH---HHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHT-T--
T ss_pred CccCCHHHHHHHHHH---HHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHHc-c--
Confidence 12234444432 344444332111 35678888888888876532 222 357888999886 4
Q ss_pred CCHHHHHHHHHHHHHhCCC-----Cc----hH-----HHHHhcCchHHH----HHHhhcccchhHHHHHHHHHHHHhcCH
Q 040073 242 FSQQASKAALKLLVELCPW-----GR----NR-----IKAVEGGGVSVL----VDLLLDVTERRVCELMLNVLDLLCRCA 303 (407)
Q Consensus 242 ~~~~~~~~A~~aL~~L~~~-----~~----n~-----~~~v~~G~v~~L----v~lL~~~~~~~~~~~al~~L~~L~~~~ 303 (407)
++...+.++.+|..|+.. .+ .| ..+.+ -++.+ .+.|....+..++..++.++......-
T Consensus 150 -~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~--~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi 226 (1049)
T 3m1i_C 150 -SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK--EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWI 226 (1049)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTS
T ss_pred -ChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhC
Confidence 566677788888777631 11 11 22222 14444 444443324567888888887766543
Q ss_pred hhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhcc
Q 040073 304 EGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKF 344 (407)
Q Consensus 304 ~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~ 344 (407)
..- .+.. ...++.+...+. .++..++.|+.+|..+...
T Consensus 227 ~~~-~~~~-~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 227 PYR-YIYE-TNILELLSTKFM-TSPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp CTH-HHHS-SSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHC
T ss_pred CHH-HHhh-hhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhC
Confidence 322 2333 344555553233 2677889999999999875
No 216
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=66.29 E-value=1.4e+02 Score=31.82 Aligned_cols=236 Identities=11% Similarity=0.076 Sum_probs=128.7
Q ss_pred CCChhhHHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCC-CCchHHHHHHHHHhcC
Q 040073 94 PVDKTQIVKILNDAKKS--P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDA-GSDECDEALSILYHLN 169 (407)
Q Consensus 94 ~~~~~~i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~-~~~~~~~a~~~L~~L~ 169 (407)
|++..+|...+...-++ + +.|.+|-.-|..+-+. ++ +......+|.+... +..++--|+.+|.+.-
T Consensus 2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 35566677777443333 3 6677777777776443 33 34555566655432 2334666666665422
Q ss_pred C--ChhH---HHhHhhccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccCC-chhhhhchhhhHHHHHHHcccCCC
Q 040073 170 V--SESY---LKSIVINNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVAD-PFQLISVKQEFFTEIVNVLRDHHQ 241 (407)
Q Consensus 170 ~--~~~~---~~~~i~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~ 241 (407)
. ..++ .+..+.+. .+..+.. .. .+..-++.+.+.+|..+....- ..+ ..+++-|+.+++.+
T Consensus 72 ~~l~~e~~~~~~~~lr~~---ll~~l~~-~~~~~~~~~IrnKL~~~la~l~~~~~p~~W-----p~~i~~l~~~~~~~-- 140 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDS---VWSYIKE-LSFLDEPAYISNAVQHLLTLLFLQLYPSNW-----NDFFASLQGVIAAS-- 140 (980)
T ss_dssp HHCCTTTSHHHHHHHHHH---HHHHHHH-CCSTTSCTHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHH--
T ss_pred HhCChhhhHHHHHHHHHH---HHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHhCcccC-----chHHHHHHHHhcCC--
Confidence 1 1110 23333321 3444333 11 2456788889999888875431 111 34688888888765
Q ss_pred CCH-HHHHHHHHHHHHhCC----CC--c-----h-----HHHHHhcC---chHHHHHHhhc---ccchhHHHHHHHHHHH
Q 040073 242 FSQ-QASKAALKLLVELCP----WG--R-----N-----RIKAVEGG---GVSVLVDLLLD---VTERRVCELMLNVLDL 298 (407)
Q Consensus 242 ~~~-~~~~~A~~aL~~L~~----~~--~-----n-----~~~~v~~G---~v~~Lv~lL~~---~~~~~~~~~al~~L~~ 298 (407)
+. ......+++|..|+. .. . . +..+.+.. +++....+|.. ..+..++..++.+|..
T Consensus 141 -~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s 219 (980)
T 3ibv_A 141 -SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQ 219 (980)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 44 455555666663332 10 0 1 12222211 14444455543 1256777888888888
Q ss_pred HhcCHhhHHHHHhccCchHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHH
Q 040073 299 LCRCAEGRAELLKHGAGLAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEML 355 (407)
Q Consensus 299 L~~~~~~r~~i~~~~g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~ 355 (407)
-...-.. ..+.. ...++.+.+.+. ++..++.|+.+|..+.....+.+-...++
T Consensus 220 ~i~wi~~-~~i~~-~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li 272 (980)
T 3ibv_A 220 WVSWINI-NLIVN-EPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLL 272 (980)
T ss_dssp HTTTSCH-HHHHC-HHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHhhcCH-Hhhhc-chHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence 8775332 23444 345666666443 47889999999999998766543333333
No 217
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=66.23 E-value=1.4e+02 Score=31.81 Aligned_cols=215 Identities=13% Similarity=0.112 Sum_probs=117.4
Q ss_pred cHHHHHHHHHHHHhccCCCcccCCCCCCCCChhhHHHHHHHhcCC---C-hHHHHHHHHHHHHhhh-Chh----HHHHHH
Q 040073 66 NHTLRRLIQAWCTINACHGIERIPTPQPPVDKTQIVKILNDAKKS---P-STGRKCLRRLRSITLQ-SER----NRSCLE 136 (407)
Q Consensus 66 n~~l~~~I~~~~~~~~~~~~~~~p~~~~~~~~~~i~~ll~~L~~~---~-~~~~~al~~L~~l~~~-~~~----~r~~i~ 136 (407)
+...|+..++|+.+-..+ ++........|..+ + ..|.-|+..|++..+. +++ .+..+.
T Consensus 21 d~~~r~~A~~~L~~~q~s-------------p~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr 87 (980)
T 3ibv_A 21 GPIIKQQATDFIGSLRSS-------------STGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR 87 (980)
T ss_dssp CHHHHHHHHHHHHHHHHS-------------TTHHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcC-------------hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH
Confidence 566788888888764411 12233344444332 4 7788899999887763 223 333333
Q ss_pred hcCcHHHHHHHhhcc---CCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCCh-hHHHHHHHHHHHh
Q 040073 137 AAGAIEFLATIITKS---DAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNY-QSRSYAIMLLKSI 212 (407)
Q Consensus 137 ~~G~i~~Lv~lL~~~---~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~-~~~~~a~~~L~~L 212 (407)
..|+.++... ..+.-++.....+|..+.... .-..=. .+++-|+.++++++. .......++|..|
T Consensus 88 -----~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~-----~p~~Wp-~~i~~l~~~~~~~~~~~~~~~~LriL~~i 156 (980)
T 3ibv_A 88 -----DSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQL-----YPSNWN-DFFASLQGVIAASSQSEFSNFYLKVLLSI 156 (980)
T ss_dssp -----HHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHH-----TTTTCT-THHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-----CcccCc-hHHHHHHHHhcCCChhHHHHHHHHHHHHh
Confidence 2334444432 122334666666666655322 111112 278888888876544 3344445555544
Q ss_pred hccC-Cc---------------hhhhhch--hhhHHHHHHHcc----cCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhc
Q 040073 213 FEVA-DP---------------FQLISVK--QEFFTEIVNVLR----DHHQFSQQASKAALKLLVELCPWGRNRIKAVEG 270 (407)
Q Consensus 213 s~~~-~~---------------~~~i~~~--~g~i~~Lv~lL~----~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~ 270 (407)
.+.- +. +..+... ..+++....+|. .. +++.+..++.+|......-+ ...+++.
T Consensus 157 ~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~---~~~l~~~~L~~l~s~i~wi~-~~~i~~~ 232 (980)
T 3ibv_A 157 GDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAK---NYGTVGLCLQVYAQWVSWIN-INLIVNE 232 (980)
T ss_dssp HHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHHTTTSC-HHHHHCH
T ss_pred HHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccC---CHHHHHHHHHHHHHHHhhcC-HHhhhcc
Confidence 3321 10 0011110 011333334443 35 78899999999998776322 3455666
Q ss_pred CchHHHHHHhhcccchhHHHHHHHHHHHHhc---CHhhHHHHHh
Q 040073 271 GGVSVLVDLLLDVTERRVCELMLNVLDLLCR---CAEGRAELLK 311 (407)
Q Consensus 271 G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~---~~~~r~~i~~ 311 (407)
+.++.+.+.|.. +++++.|+.+|..+.. .++.+..++.
T Consensus 233 ~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~ 273 (980)
T 3ibv_A 233 PCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLN 273 (980)
T ss_dssp HHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred hHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHH
Confidence 788888887764 5788888888887765 3344554444
No 218
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=65.29 E-value=2 Score=28.08 Aligned_cols=13 Identities=23% Similarity=0.897 Sum_probs=11.4
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 31 ~lP~dw~CP~Cg~ 43 (52)
T 1yk4_A 31 DLPDDWVCPLCGA 43 (52)
T ss_dssp GSCTTCBCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 219
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=64.70 E-value=1.9 Score=38.27 Aligned_cols=36 Identities=11% Similarity=0.008 Sum_probs=22.4
Q ss_pred CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 346 ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 346 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.+-.++..+++.-+.+.| ..| .+....+|+.|+.-|
T Consensus 206 ~d~~VR~~aa~~l~~~~L-~~L-~D~~~~VR~aa~~~L 241 (244)
T 1lrv_A 206 PDWTVRLAAVEHASLEAL-REL-DEPDPEVRLAIAGRL 241 (244)
T ss_dssp SSHHHHHHHHHHSCHHHH-HHC-CCCCHHHHHHHHCCC
T ss_pred CCHHHHHHHHHcCCHHHH-HHc-cCCCHHHHHHHHHHh
Confidence 344577777766555544 444 467888888876543
No 220
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=64.32 E-value=0.23 Score=36.65 Aligned_cols=41 Identities=24% Similarity=0.311 Sum_probs=27.5
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..||.|...|. + ..|+.+|..|=..+.. ...||.|++++..
T Consensus 33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f~~---~a~CPdC~q~Lev 73 (101)
T 2jne_A 33 LHCPQCQHVLD-Q---DNGHARCRSCGEFIEM---KALCPDCHQPLQV 73 (101)
T ss_dssp CBCSSSCSBEE-E---ETTEEEETTTCCEEEE---EEECTTTCSBCEE
T ss_pred ccCccCCCcce-e---cCCEEECccccchhhc---cccCcchhhHHHH
Confidence 68999998764 2 2455557777443322 4579999998753
No 221
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=64.02 E-value=2.1 Score=28.34 Aligned_cols=13 Identities=31% Similarity=0.797 Sum_probs=11.2
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 32 ~lP~dw~CP~Cga 44 (55)
T 2v3b_B 32 DIPADWVCPDCGV 44 (55)
T ss_dssp GSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 4899999999985
No 222
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=63.91 E-value=5.9 Score=28.05 Aligned_cols=43 Identities=14% Similarity=0.156 Sum_probs=31.4
Q ss_pred cccCccccccCcCceec--C--CcccccHHHHHHHHhcC---CCCCCccc
Q 040073 9 HFLCPISLQLMRDPVTV--S--TGITYDRVNIERWLFTC---KNNTCPVT 51 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~--~--~g~t~~r~~i~~~~~~~---~~~~cP~~ 51 (407)
.++|.+|.+-+.|---+ | .+|.||-.|-.++++.. ..-+||.-
T Consensus 15 ~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG 64 (93)
T 2cs3_A 15 PLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSG 64 (93)
T ss_dssp SCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTS
T ss_pred eeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCC
Confidence 47999999999997644 3 37999998888877652 23456543
No 223
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=63.55 E-value=2.4 Score=30.43 Aligned_cols=13 Identities=23% Similarity=0.662 Sum_probs=11.5
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 56 dlPddW~CPvCga 68 (81)
T 2kn9_A 56 DIPDDWSCPDCGA 68 (81)
T ss_dssp TSCTTCCCTTTCC
T ss_pred HCCCCCcCCCCCC
Confidence 5899999999985
No 224
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=63.25 E-value=3.5 Score=30.30 Aligned_cols=45 Identities=16% Similarity=0.151 Sum_probs=34.6
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+.|--|=.-.+ =.+-+..|-+|+.|+..-+.. +..||+|+.++..
T Consensus 29 ~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~--SdrCpIC~~pLPt 73 (99)
T 2ko5_A 29 QFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV--SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS--SSEETTTTEECCC
T ss_pred ccChhhccccC-CeeeecchhhHHHHHHHHHhh--ccCCcccCCcCCc
Confidence 56777766555 345567799999999998754 7789999999865
No 225
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=60.89 E-value=3.3 Score=30.60 Aligned_cols=12 Identities=17% Similarity=0.468 Sum_probs=11.3
Q ss_pred ccHHHHHHHHhc
Q 040073 31 YDRVNIERWLFT 42 (407)
Q Consensus 31 ~~r~~i~~~~~~ 42 (407)
|||.|+.+|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999976
No 226
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=60.56 E-value=2.6 Score=29.36 Aligned_cols=13 Identities=23% Similarity=0.784 Sum_probs=11.3
Q ss_pred CCCCcccCccccc
Q 040073 5 EVPAHFLCPISLQ 17 (407)
Q Consensus 5 ~~p~~~~Cpi~~~ 17 (407)
++|+++.||+|+-
T Consensus 36 ~lPddw~CP~Cga 48 (70)
T 1dx8_A 36 DLSDSFMCPACRS 48 (70)
T ss_dssp GSCTTCBCTTTCC
T ss_pred hCCCCCcCCCCCC
Confidence 4899999999985
No 227
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=59.84 E-value=3.6 Score=30.39 Aligned_cols=12 Identities=25% Similarity=0.772 Sum_probs=11.2
Q ss_pred ccHHHHHHHHhc
Q 040073 31 YDRVNIERWLFT 42 (407)
Q Consensus 31 ~~r~~i~~~~~~ 42 (407)
|||.|+.+|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999975
No 228
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=59.23 E-value=39 Score=27.09 Aligned_cols=73 Identities=12% Similarity=0.154 Sum_probs=56.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccC---CCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDH---HQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|+++++.++..|..+|..|..+.... ..++. ..++..|+.++... ...+..+++.++..|..-+.
T Consensus 39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAK-FRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 6788888999999999999999999998876543 34444 47999999998741 11377899999888887654
No 229
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=59.13 E-value=26 Score=27.89 Aligned_cols=74 Identities=16% Similarity=0.084 Sum_probs=52.1
Q ss_pred hHHHHHHHHcCCchhhHHHHHHHHHHhccCCchHHHHHHHHh-ChHHHHHHHHhcC-------CCHHHHHHHHHHHHHHH
Q 040073 316 LAVVSKKILRVSHAASDRAVRILCSVCKFSATARVLQEMLQV-GVVSKLCLVLQVD-------ASVKTKERAREILKLNA 387 (407)
Q Consensus 316 i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~-g~i~~Ll~ll~~~-------~~~~~k~~A~~lL~~l~ 387 (407)
+..|.+.|.+.++..+-.|+.+|-.|+.+.. +.++..+.+. ..|..|..+=-.+ -...+|.+|.+++.+|.
T Consensus 51 m~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs-~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~ 129 (140)
T 1vdy_A 51 SEFILKRLDNKSPIVKQKALRLIKYAVGKSG-SEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF 129 (140)
T ss_dssp HHHHHHHHTSSSHHHHHHHHHHHHHHTTTSC-HHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCcceeehHHHHHHHHHHhCC-HHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence 4567777777788889999999999998754 4577777764 4444443322111 13789999999999987
Q ss_pred hhc
Q 040073 388 RAW 390 (407)
Q Consensus 388 ~~~ 390 (407)
...
T Consensus 130 d~~ 132 (140)
T 1vdy_A 130 SEE 132 (140)
T ss_dssp CCS
T ss_pred CcC
Confidence 743
No 230
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=58.66 E-value=2.1e+02 Score=31.25 Aligned_cols=221 Identities=11% Similarity=0.044 Sum_probs=112.8
Q ss_pred HHHHHHHhcCC--C-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCC-----
Q 040073 100 IVKILNDAKKS--P-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVS----- 171 (407)
Q Consensus 100 i~~ll~~L~~~--~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~----- 171 (407)
+..++..+.++ + +.|..|-..|..+-+. ++ +...+...|.+...+..++.-|+.+|.+....
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p~---------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l 82 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEK-CP---------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGM 82 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHH-CT---------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGS
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhC-ch---------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccC
Confidence 44455444444 3 4567777777776443 21 23444444432222234466666666654211
Q ss_pred hhHHHhHhhccchhhHHHHHHHHhc---CChhHHHHHHHHHHHhhccCCc-hhhhhchhhhHHHHHHHcccCCCCCHHHH
Q 040073 172 ESYLKSIVINNGEEFLESLMRVLKC---GNYQSRSYAIMLLKSIFEVADP-FQLISVKQEFFTEIVNVLRDHHQFSQQAS 247 (407)
Q Consensus 172 ~~~~~~~i~~~gg~~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~ 247 (407)
+++.+..+.+. .+..+...-.. .+..++...+.++..++..+-. .+ .++++.|++++++ ++...
T Consensus 83 ~~e~k~~Ir~~---ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W-----p~ll~~L~~~~~~----~~~~~ 150 (1204)
T 3a6p_A 83 SRLEKVYLKNS---VMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW-----PDMLIELDTLSKQ----GETQT 150 (1204)
T ss_dssp CHHHHHHHHHH---HHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC-----TTHHHHHHHHHHT----CHHHH
T ss_pred CHHHHHHHHHH---HHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc-----hHHHHHHHHHhcC----CHHHH
Confidence 12334444432 34433322111 3577888889999988765321 22 3578888988865 35567
Q ss_pred HHHHHHHHHhCCC---C----chHHH----HHhcCchHHHH----HHhhcc------------------cchhHHHHHHH
Q 040073 248 KAALKLLVELCPW---G----RNRIK----AVEGGGVSVLV----DLLLDV------------------TERRVCELMLN 294 (407)
Q Consensus 248 ~~A~~aL~~L~~~---~----~n~~~----~v~~G~v~~Lv----~lL~~~------------------~~~~~~~~al~ 294 (407)
+.++.+|..|+.. . ..|.. .+... ++.++ ++|... .+..+...++.
T Consensus 151 e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~-~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~ 229 (1204)
T 3a6p_A 151 ELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN-MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALN 229 (1204)
T ss_dssp HHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHH
Confidence 7888888888531 1 11111 11211 33433 334321 01234455555
Q ss_pred HHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcCCchhhHHHHHHHHHHhccCC
Q 040073 295 VLDLLCRCAEGRAELLKHG-AGLAVVSKKILRVSHAASDRAVRILCSVCKFSA 346 (407)
Q Consensus 295 ~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~~~~~ 346 (407)
++......-.. ..+.+.. ..++.+... . .++..+..|+.+|..+.....
T Consensus 230 ~l~~~l~Wi~~-~~i~~~~~~ll~~l~~~-l-~~~~lr~~A~ecL~~i~s~~~ 279 (1204)
T 3a6p_A 230 TLAGYIDWVSM-SHITAENCKLLEILCLL-L-NEQELQLGAAECLLIAVSRKG 279 (1204)
T ss_dssp HHHTTTTTSCH-HHHHTTTSHHHHHHHHG-G-GCTTTHHHHHHHHHHHHTCCS
T ss_pred HHHHHHhccCH-HHHHhccchHHHHHHHH-c-CCHHHHHHHHHHHHHHHhCCC
Confidence 55544433221 1222321 133333332 2 257788999999999998653
No 231
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=58.00 E-value=75 Score=27.69 Aligned_cols=137 Identities=13% Similarity=0.158 Sum_probs=81.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHH-HcccCCCCCHHHHHHHHHHHHHhCC-CCch
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN-VLRDHHQFSQQASKAALKLLVELCP-WGRN 263 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~A~~aL~~L~~-~~~n 263 (407)
.++..-.+.++...++|..|+.+|..+ . .....++.+-. +-.++ +-.+++.++.++..++. .+..
T Consensus 72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~---------~~~~~L~~ir~~va~D~---~WrVre~lA~a~~~~~~~~~pe 138 (240)
T 3l9t_A 72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S---------KDKEILIFMRDEVSKDN---NWRVQEVLAKAFDEFCKKIEYK 138 (240)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHT-T---------TSHHHHHHHHHTGGGCS---CHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhCcchHHHHHHHHHHHhc-c---------CcHHHHHHHHHHhCCCC---CccHHHHHHHHHHHHHHhcCHH
Confidence 344555667778899999999988877 2 11245666666 44444 88999999999998874 2222
Q ss_pred HHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcCHhhHHHHHhcc-CchHHHHHHHHcCCchhhHHHHHHHHHHh
Q 040073 264 RIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRCAEGRAELLKHG-AGLAVVSKKILRVSHAASDRAVRILCSVC 342 (407)
Q Consensus 264 ~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~~~~r~~i~~~~-g~i~~Lv~~l~~~s~~~~e~a~~~L~~l~ 342 (407)
+ .++.+.....+. +..++..|..-+.--+..+. ...+. -.+|.+-.+..+.+.-.+......|..++
T Consensus 139 ~-------~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~----~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~S 206 (240)
T 3l9t_A 139 K-------ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPY----FKENPNEAIRRIADLKEDVSEYVRKSVGNALRDIS 206 (240)
T ss_dssp T-------THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTT----TTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHH
T ss_pred H-------HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccch----hhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHh
Confidence 1 566777777775 77777776665432221111 00111 11222222112223456777778899999
Q ss_pred ccCCc
Q 040073 343 KFSAT 347 (407)
Q Consensus 343 ~~~~~ 347 (407)
+..++
T Consensus 207 K~~Pd 211 (240)
T 3l9t_A 207 KKFPD 211 (240)
T ss_dssp TTCHH
T ss_pred hhCHH
Confidence 86554
No 232
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=55.17 E-value=56 Score=26.20 Aligned_cols=73 Identities=14% Similarity=0.174 Sum_probs=56.5
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccC---CCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDH---HQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|.++++.++..|..+|..|..+.... ..++. ..++..|+.++... +..+..++...+..|..-+.
T Consensus 49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK-FRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS-HHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh-HHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 6778888899999999999999999998776644 33444 47899999999641 11378899999988887664
No 233
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=54.01 E-value=1.1e+02 Score=26.62 Aligned_cols=140 Identities=14% Similarity=0.028 Sum_probs=82.8
Q ss_pred hhhHHHHHHHhcCCC--hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhccCCCCchHHHHHHHHHhcCCChhH
Q 040073 97 KTQIVKILNDAKKSP--STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKSDAGSDECDEALSILYHLNVSESY 174 (407)
Q Consensus 97 ~~~i~~ll~~L~~~~--~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~ 174 (407)
...+..+...|..++ ++|..|+..|..+ .... ..++.+-..+..++. =-+++.+..++..++..
T Consensus 69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~-WrVre~lA~a~~~~~~~--- 134 (240)
T 3l9t_A 69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNN-WRVQEVLAKAFDEFCKK--- 134 (240)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSC-HHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCC-ccHHHHHHHHHHHHHHh---
Confidence 455667777776554 7777888866655 2111 123333332332222 12477776666654420
Q ss_pred HHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHH
Q 040073 175 LKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLL 254 (407)
Q Consensus 175 ~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL 254 (407)
. ... ..++.+...+.+++..+|..|+..++--+..... ...-.-+++.|-.+..++ +.-++++.+++|
T Consensus 135 ----~-~pe-~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~---s~yVrKSVan~L 202 (240)
T 3l9t_A 135 ----I-EYK-KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDV---SEYVRKSVGNAL 202 (240)
T ss_dssp ----H-CTT-TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCS---CHHHHHHHHHHH
T ss_pred ----c-CHH-HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCCh---HHHHHHHHHHHH
Confidence 0 111 1477888899999999999998887653332111 111112344444455555 888999999999
Q ss_pred HHhCCCCc
Q 040073 255 VELCPWGR 262 (407)
Q Consensus 255 ~~L~~~~~ 262 (407)
..++..++
T Consensus 203 rD~SK~~P 210 (240)
T 3l9t_A 203 RDISKKFP 210 (240)
T ss_dssp HHHHTTCH
T ss_pred HHHhhhCH
Confidence 99998655
No 234
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=53.63 E-value=17 Score=31.56 Aligned_cols=72 Identities=15% Similarity=0.118 Sum_probs=55.2
Q ss_pred hhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCc--hHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 227 EFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGR--NRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 227 g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~--n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
.++..|..-|+++ ++.++..|+..|-.+..+-. -...+.....+..|+.++....+..++++++.++...+.
T Consensus 45 ~a~ral~krl~~~---n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 45 YAVNSIKKKVNDK---NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHHHHHTCS---SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC---CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 4688888888887 99999999988888776433 345555666777888888665577899999999887764
No 235
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=52.62 E-value=8 Score=29.94 Aligned_cols=47 Identities=9% Similarity=0.063 Sum_probs=36.9
Q ss_pred CCcccCccccccCcC-ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRD-PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~d-Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|+-|.|..|...+.+ +....-|.-||+.+-.+-+ ...|+.|++++..
T Consensus 28 ~~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~----~~~C~~C~~~I~~ 75 (126)
T 2xqn_T 28 LKHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNH----AVVCQGCHNAIDP 75 (126)
T ss_dssp GGGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHS----CCBCTTTCSBCCT
T ss_pred CCCCCcCCCCCCCCcCEEEeECCEEechHHhCcCc----CccCcccCCcCCc
Confidence 455999999998876 5667789999998866543 4579999988764
No 236
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=51.58 E-value=4.5 Score=33.90 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=26.5
Q ss_pred CCCCccccccccccCCCCCCccHHH-HHHHHHHHHhcc
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTINA 81 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~~~ 81 (407)
.+.||+|+..+.+ |+ .+...+++ +..|..|...++
T Consensus 106 ~f~CPI~~elm~D-PV-~~~~Ghtfer~~I~~~l~~~~ 141 (179)
T 2f42_A 106 YLCGKISFELMRE-PC-ITPSGITYDRKDIEEHLQRVG 141 (179)
T ss_dssp GGBCTTTCSBCSS-EE-ECTTSCEEEHHHHHHHHHHTC
T ss_pred hhcccCccccCCC-Ce-ECCCCCEECHHHHHHHHHhCC
Confidence 4789999999887 64 33345555 899999998764
No 237
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=50.49 E-value=50 Score=27.13 Aligned_cols=73 Identities=12% Similarity=0.197 Sum_probs=56.1
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCc--hhhhhchhhhHHHHHHHcccC---CCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADP--FQLISVKQEFFTEIVNVLRDH---HQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|+++++.++..|..+|..|..+... ...+.. ..++..|+.++... ...+..+++.++..|..-+.
T Consensus 51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas-~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK-FRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS-HHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh-HHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 677888889999999999999999999877543 334444 47899999998631 11368899999988887664
No 238
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=49.51 E-value=15 Score=29.70 Aligned_cols=79 Identities=10% Similarity=0.173 Sum_probs=53.9
Q ss_pred chHHHHHHHHcC-CchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHH-HHHHHhcC--CCHHHHHHHHHHHHHHHhhc
Q 040073 315 GLAVVSKKILRV-SHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSK-LCLVLQVD--ASVKTKERAREILKLNARAW 390 (407)
Q Consensus 315 ~i~~Lv~~l~~~-s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~-Ll~ll~~~--~~~~~k~~A~~lL~~l~~~~ 390 (407)
++..+.+.|... ++..+-.|+.+|-.+.++++. .+..++.+...+.. |+.++... ....+|+++..+++..+...
T Consensus 54 A~ral~KRl~~~~n~~~~l~AL~LLe~cvkNCG~-~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F 132 (152)
T 3rru_A 54 AVKALKKRISKNYNHKEIQLTLSLIDMCVQNCGP-SFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGF 132 (152)
T ss_dssp HHHHHHHHHTTCCBHHHHHHHHHHHHHHHHHSCH-HHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHHHhcCH-HHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHh
Confidence 355667767533 456677899999998887765 36666666566654 66666532 24579999999998877766
Q ss_pred cCCC
Q 040073 391 RDSP 394 (407)
Q Consensus 391 ~~~~ 394 (407)
+..|
T Consensus 133 ~~~p 136 (152)
T 3rru_A 133 PGGV 136 (152)
T ss_dssp SSSC
T ss_pred CCCC
Confidence 5554
No 239
>3vhs_A ATPase wrnip1; zinc finger, ubiquitin-binding domain, ubiquitin binding, ME binding protein; 1.90A {Homo sapiens}
Probab=49.24 E-value=4.2 Score=21.85 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=8.4
Q ss_pred ccCccccccCc
Q 040073 10 FLCPISLQLMR 20 (407)
Q Consensus 10 ~~Cpi~~~~~~ 20 (407)
..||+|++.|-
T Consensus 7 vqcpvcqq~mp 17 (29)
T 3vhs_A 7 VQCPVCQQMMP 17 (29)
T ss_dssp EECTTTCCEEE
T ss_pred eeChHHHHhCc
Confidence 47888888774
No 240
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=47.50 E-value=1.3e+02 Score=29.24 Aligned_cols=107 Identities=13% Similarity=0.105 Sum_probs=71.6
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHH-HHHHHHHHHHHhCCCCchHH
Q 040073 187 LESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQ-ASKAALKLLVELCPWGRNRI 265 (407)
Q Consensus 187 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~-~~~~A~~aL~~L~~~~~n~~ 265 (407)
++.++.-|.+++......|+.+|. ...-+.++...+++..|.+++-+.+ .... +..+.=.++..|++++=.|.
T Consensus 118 ve~i~~aL~S~~~~l~~~~ckVI~-----~s~pk~lfa~t~iidiLL~lyFd~~-t~i~~vvn~IE~~~~~LssdeLirr 191 (500)
T 3vld_A 118 AEDLVKALRSEIDPLKVAACRVIE-----NSQPKGLFATSNIIDILLDILFDEK-VENDKLITAIEKALERLSTDELIRR 191 (500)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-----TCSSGGGGTTSSHHHHHHHHHTCTT-CCCHHHHHHHHHHHHHHTTSHHHHH
T ss_pred HHHHHHHHhcCChHHHHHHHHHhc-----ccCchhHhccChHHHHHHHHHcCCC-CCcHHHHHHHHHHHHHcCchHHHHH
Confidence 889999999999999999999888 2334445666789999999887651 1223 66666667777766554677
Q ss_pred HHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhc
Q 040073 266 KAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCR 301 (407)
Q Consensus 266 ~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~ 301 (407)
++.+.. .|.| ..+++..+.-+..+-+..|..+..
T Consensus 192 ril~nn-l~lL-~~vK~~~~~i~~sRLLdll~il~~ 225 (500)
T 3vld_A 192 RLFDNN-LPYL-VSVKGRMETVSFVRLIDFLTIEFQ 225 (500)
T ss_dssp HHHTTT-HHHH-HHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHh-HHHH-HHHhcCCCceeHHHHHHHHHHHhc
Confidence 777654 4444 444443244555566666666643
No 241
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.06 E-value=51 Score=28.22 Aligned_cols=71 Identities=14% Similarity=0.199 Sum_probs=54.2
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCch--hhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPF--QLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+-|.++++.++..|..+|..+..+.... ..++. ..++..|+.++.+. .+.++++.++..+..-+.
T Consensus 43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~-~~fl~~l~~l~~~~--~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFT-KENCEMFSSFLEST--PHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSS-HHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHh-HHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHH
Confidence 6777888888999999999999999988765432 34444 46889999988765 478888888887776553
No 242
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=46.01 E-value=3.1e+02 Score=29.46 Aligned_cols=123 Identities=10% Similarity=0.069 Sum_probs=74.7
Q ss_pred HhcCCC-hHHHHHHHHHHHHhhhChhHHHHHHhcCcHHHHHHHhhcc---CC--CCchHHHHHHHHHhcCCChhHHHhHh
Q 040073 106 DAKKSP-STGRKCLRRLRSITLQSERNRSCLEAAGAIEFLATIITKS---DA--GSDECDEALSILYHLNVSESYLKSIV 179 (407)
Q Consensus 106 ~L~~~~-~~~~~al~~L~~l~~~~~~~r~~i~~~G~i~~Lv~lL~~~---~~--~~~~~~~a~~~L~~L~~~~~~~~~~i 179 (407)
.+...+ +.+.-+++.|.++... ..++.|..++... .. +..++..|+++|..++...+ +.
T Consensus 448 ~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~~- 512 (1056)
T 1lsh_A 448 SSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---RK- 512 (1056)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---HH-
T ss_pred HHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---HH-
Confidence 334444 6667788888888653 2467777776531 11 12245678888877764321 11
Q ss_pred hccchhhHHHHHHHHh--cCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHh
Q 040073 180 INNGEEFLESLMRVLK--CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVEL 257 (407)
Q Consensus 180 ~~~gg~~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L 257 (407)
+-+.+..+.. ..+.++|..|..+|... .++ ...+..++..+..+ .+.++..-....|.+|
T Consensus 513 ------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t--~P~--------~~~l~~ia~~l~~E--~~~QV~sfv~S~l~sl 574 (1056)
T 1lsh_A 513 ------VQEIVLPIFLNVAIKSELRIRSCIVFFES--KPS--------VALVSMVAVRLRRE--PNLQVASFVYSQMRSL 574 (1056)
T ss_dssp ------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC--------HHHHHHHHHHHTTC--SCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHhcCCCCChHHHHHHHHHHHHH--CcC--------HHHHHHHHHHHhhC--chHHHHHHHHHHHHHH
Confidence 3445667774 36888888888888653 222 13355566666654 3777777777778887
Q ss_pred CCCC
Q 040073 258 CPWG 261 (407)
Q Consensus 258 ~~~~ 261 (407)
+...
T Consensus 575 a~s~ 578 (1056)
T 1lsh_A 575 SRSS 578 (1056)
T ss_dssp TTCC
T ss_pred HhcC
Confidence 7754
No 243
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=45.98 E-value=1.7e+02 Score=26.49 Aligned_cols=148 Identities=8% Similarity=0.059 Sum_probs=87.5
Q ss_pred HHHHHHHHhcC------ChhHHHHHHHHHHHhhccCCchhhhhc-hhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 187 LESLMRVLKCG------NYQSRSYAIMLLKSIFEVADPFQLISV-KQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 187 i~~Lv~lL~~~------~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
...+-.++++| +.+.-+.|...|..++..-+.=..|.. .-..+..|+ +.... ++..++.|++.|....+
T Consensus 24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~---~~~~rE~aarII~ssLR 99 (315)
T 3qml_C 24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL---PLTLRELSTRVITSCLR 99 (315)
T ss_dssp HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS---CHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC---ChhHHHHHHHHHHHHHc
Confidence 44555666666 344456677777777644333333433 222333333 22333 67899999999998777
Q ss_pred CCchHHHHH-h--cCchHHHHHHhhcc------cchhHHHHHHHHHHHHhcCHhhHHHHHhccCchHHHHHHHHcC--Cc
Q 040073 260 WGRNRIKAV-E--GGGVSVLVDLLLDV------TERRVCELMLNVLDLLCRCAEGRAELLKHGAGLAVVSKKILRV--SH 328 (407)
Q Consensus 260 ~~~n~~~~v-~--~G~v~~Lv~lL~~~------~~~~~~~~al~~L~~L~~~~~~r~~i~~~~g~i~~Lv~~l~~~--s~ 328 (407)
+.+.....| + -..|..+..-|... ....+...-+++|..|..++.. +. ..|+..|.+++-.. .+
T Consensus 100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F~--~~~m~~L~~ly~~~~~d~ 174 (315)
T 3qml_C 100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---LP--IYSTVVLQNVYERNNKDK 174 (315)
T ss_dssp TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C----CCHHHHHHHHHHTTTCH
T ss_pred cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---hh--hccHHHHHHHHccCCCCH
Confidence 655333322 2 24444444444331 1336677889999999987631 21 24678888876655 67
Q ss_pred hhhHHHHHHHHHHhc
Q 040073 329 AASDRAVRILCSVCK 343 (407)
Q Consensus 329 ~~~e~a~~~L~~l~~ 343 (407)
..+..++.++..+..
T Consensus 175 ~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 175 QLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcc
Confidence 778888888877773
No 244
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=43.78 E-value=16 Score=28.08 Aligned_cols=48 Identities=10% Similarity=0.080 Sum_probs=37.5
Q ss_pred CcccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
+-|.|..|...+.| .....-|.-||+.+-.+-|.. ...|-.|++++..
T Consensus 31 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~--~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGAGGSGGHMGSG 81 (122)
T ss_dssp HHHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC--CCSSSCSSCCSCC
T ss_pred hCCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC--CCccccCCCCcCc
Confidence 34899999999974 566778999999998886632 2379999988765
No 245
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=43.55 E-value=24 Score=22.06 Aligned_cols=39 Identities=8% Similarity=0.114 Sum_probs=24.7
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHh-cC---CCCCCcccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLF-TC---KNNTCPVTKQVLQ 56 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~-~~---~~~~cP~~~~~~~ 56 (407)
...|.|++|...|.. +..+.++.. .. ..+.|+.|++.+.
T Consensus 10 ~k~~~C~~C~k~f~~-----------~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSR-----------PDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESS-----------HHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCC-----------HHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 344888888776654 345555543 21 2478999988764
No 246
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=43.10 E-value=11 Score=23.72 Aligned_cols=38 Identities=16% Similarity=0.176 Sum_probs=23.2
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~ 57 (407)
.|.|++|...|...- .+..+... .....||.|+..+..
T Consensus 4 ~~~C~~C~~~f~~~~-----------~l~~H~~~h~~~~~~~C~~C~~~f~~ 44 (57)
T 3uk3_C 4 SRECSYCGKFFRSNY-----------YLNIHLRTHTGEKPYKCEFCEYAAAQ 44 (57)
T ss_dssp -CBCTTTCCBCSCHH-----------HHHHHHHHHHCCCCEECSSSSCEESS
T ss_pred CccCCCCcchhCChH-----------HHHHHHHHcCCCCCcCCCCCcchhCC
Confidence 478999888776652 23332221 235779999887654
No 247
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=42.74 E-value=99 Score=24.85 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=51.8
Q ss_pred hHHHHHHHHh-cCChhHHHHHHHHHHHhhccCCchh--hhhchhhhHHH-HHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 186 FLESLMRVLK-CGNYQSRSYAIMLLKSIFEVADPFQ--LISVKQEFFTE-IVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 186 ~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~--~i~~~~g~i~~-Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
++..|.+.|+ ++++.++..|..+|..|..+..... .++. ..++.. |+.++......+..+++.++..|..-+.
T Consensus 54 a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~-~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 54 ALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVAS-QDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTS-HHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhh-HHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 6777888887 4788899999999999987765432 3443 478887 8888854311245888888888776543
No 248
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=42.52 E-value=16 Score=28.39 Aligned_cols=49 Identities=10% Similarity=0.137 Sum_probs=37.7
Q ss_pred CCcccCccccccCc---CceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMR---DPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~---dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|+-|.|..|...+. .+....-|.-||+.+-.+-+.. ...|+.|++++..
T Consensus 27 ~~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~--~~~C~~C~~~I~~ 78 (131)
T 2xjy_A 27 EDCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ--DGLCASCDKRIRA 78 (131)
T ss_dssp TTTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC--CEECTTTCCEECT
T ss_pred HHHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC--ccChhhcCCccCc
Confidence 45699999999996 3677789999999997776521 2379999987753
No 249
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=40.21 E-value=1.5 Score=31.51 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=24.2
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
..||.|...|. -..|+.+|..|=..+-. ...||.|++++.
T Consensus 3 ~~CP~C~~~l~----~~~~~~~C~~C~~~~~~---~afCPeCgq~Le 42 (81)
T 2jrp_A 3 ITCPVCHHALE----RNGDTAHCETCAKDFSL---QALCPDCRQPLQ 42 (81)
T ss_dssp CCCSSSCSCCE----ECSSEEECTTTCCEEEE---EEECSSSCSCCC
T ss_pred CCCCCCCCccc----cCCCceECccccccCCC---cccCcchhhHHH
Confidence 67999987654 12344456666333221 237999988764
No 250
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=37.13 E-value=4.3e+02 Score=28.50 Aligned_cols=186 Identities=12% Similarity=0.127 Sum_probs=103.0
Q ss_pred hHHHHHHHHhc-CChhHHHHHHHHHHHhhccCCch----hhhhchhhhHHHHHHHcccCC--CCCHHHHHHHHHHHHHhC
Q 040073 186 FLESLMRVLKC-GNYQSRSYAIMLLKSIFEVADPF----QLISVKQEFFTEIVNVLRDHH--QFSQQASKAALKLLVELC 258 (407)
Q Consensus 186 ~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~----~~i~~~~g~i~~Lv~lL~~~~--~~~~~~~~~A~~aL~~L~ 258 (407)
+...+..+|.+ .+..+|.-|+.+|.+.....-.. .........+..+.+...++. ..++..+...+.+|..+.
T Consensus 61 aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~ 140 (1073)
T 3gjx_A 61 AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQIL 140 (1073)
T ss_dssp HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHH
Confidence 45555555544 48889999999999876543211 111111233444443322110 014556666667777665
Q ss_pred CC--CchHHHHHhcCchHHHHHHhhcccchhHHHHHHHHHHHHhcC--H-------hh-----HHHHHhccCchHHHHHH
Q 040073 259 PW--GRNRIKAVEGGGVSVLVDLLLDVTERRVCELMLNVLDLLCRC--A-------EG-----RAELLKHGAGLAVVSKK 322 (407)
Q Consensus 259 ~~--~~n~~~~v~~G~v~~Lv~lL~~~~~~~~~~~al~~L~~L~~~--~-------~~-----r~~i~~~~g~i~~Lv~~ 322 (407)
.. +++. .+.++-+++++..+ ....+..+.+|..|... . .. +..+... ++.++.+
T Consensus 141 k~~~P~~W-----p~fi~dLv~~~~~~--~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~---~~~Il~l 210 (1073)
T 3gjx_A 141 KQEWPKHW-----PTFISDIVGASRTS--ESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE---FSQIFQL 210 (1073)
T ss_dssp HHHTTTTC-----TTHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT---CHHHHHH
T ss_pred HHhChhhc-----cHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH---HHHHHHH
Confidence 42 2232 24677777777553 45567778888777642 0 01 2223332 4555554
Q ss_pred HH----c-CCchhhHHHHHHHHHHhccCCchHHHHHHHHhChHHHHH-HHHhcCCCHHHHHHHHHHHHHHHh
Q 040073 323 IL----R-VSHAASDRAVRILCSVCKFSATARVLQEMLQVGVVSKLC-LVLQVDASVKTKERAREILKLNAR 388 (407)
Q Consensus 323 l~----~-~s~~~~e~a~~~L~~l~~~~~~~~~~~~~~~~g~i~~Ll-~ll~~~~~~~~k~~A~~lL~~l~~ 388 (407)
+. + .++.....++.+|......-+ ...+++.+.++.|+ .+|. ++..+..|...|..+..
T Consensus 211 l~~iL~~~~~~~lv~~~L~~L~~~~sWI~----i~~i~~~~ll~~L~~~~L~---~~~~r~aA~dcL~eIv~ 275 (1073)
T 3gjx_A 211 CQFVMENSQNAPLVHATLETLLRFLNWIP----LGYIFETKLISTLIYKFLN---VPMFRNVSLKCLTEIAG 275 (1073)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTTTSC----THHHHSSSHHHHHHHHTSS---SHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCCHHHHHHHHHHHHHHHHhcC----HHHhccchHHHHHHHHhcC---ChHHHHHHHHHHHHHHh
Confidence 32 2 235556778888888887653 34666778887774 5443 67889998887655543
No 251
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=37.12 E-value=16 Score=32.22 Aligned_cols=37 Identities=16% Similarity=0.006 Sum_probs=25.7
Q ss_pred CchHHHHHHHHhChHHHHHHHHhcCCCHHHHHHHHHHH
Q 040073 346 ATARVLQEMLQVGVVSKLCLVLQVDASVKTKERAREIL 383 (407)
Q Consensus 346 ~~~~~~~~~~~~g~i~~Ll~ll~~~~~~~~k~~A~~lL 383 (407)
.+..++..++..-..+.|..+++ +....+|+.++.-+
T Consensus 182 ~d~~VR~aaa~~l~~~~L~~Ll~-D~d~~VR~~aa~~l 218 (244)
T 1lrv_A 182 PEPEVRRIVASRLRGDDLLELLH-DPDWTVRLAAVEHA 218 (244)
T ss_dssp SSHHHHHHHHHHCCGGGGGGGGG-CSSHHHHHHHHHHS
T ss_pred CCHHHHHHHHHhCCHHHHHHHHc-CCCHHHHHHHHHcC
Confidence 34567777777666677777766 56888888887654
No 252
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=36.79 E-value=2.4e+02 Score=25.53 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=81.2
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhc--hhhhHHHHH-
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISV--KQEFFTEIV- 233 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~--~~g~i~~Lv- 233 (407)
..+.|+..|-.++.+-+---+++...- ..+..|+ +.......+++.|+++|.....+.+.....+. ...++..+.
T Consensus 44 ~le~aLD~L~ElSHDi~~G~KI~~~ef-~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~ 121 (315)
T 3qml_C 44 RLEDSFDRIMEFAHDYKHGYKIITHEF-ALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMA 121 (315)
T ss_dssp HHHHHHHHHGGGTTSHHHHHHHHHHHH-HHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHhhhHHHhCcH-HHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHH
Confidence 377888888888865543345444221 1343333 23345677899999999998877654433221 123333333
Q ss_pred ---HHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHHhhcc-cchhHHHHHHHHHHHHh
Q 040073 234 ---NVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDLLLDV-TERRVCELMLNVLDLLC 300 (407)
Q Consensus 234 ---~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~lL~~~-~~~~~~~~al~~L~~L~ 300 (407)
.++..........++.-+.+|-.|..+.. .+. ..++..|++++... .+..++.+++.++..+-
T Consensus 122 ~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 122 ALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 33322100145677788899999988652 111 33567888877642 15678888888877665
No 253
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=36.48 E-value=75 Score=22.73 Aligned_cols=50 Identities=10% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCcccCccccccCcCc---------------eec-CCccccc-HHHHHHHHhcC---CCCCCcccccccc
Q 040073 7 PAHFLCPISLQLMRDP---------------VTV-STGITYD-RVNIERWLFTC---KNNTCPVTKQVLQ 56 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP---------------v~~-~~g~t~~-r~~i~~~~~~~---~~~~cP~~~~~~~ 56 (407)
...|.|++|...|... ..- .||.+|- +..+.++.... ..+.|+.|+..+.
T Consensus 15 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp CCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred CcCeECCCCCCccCCHHHHHHHHHHcCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 3458899998887543 222 2565553 33444444331 1356777766543
No 254
>1yc5_A NAD-dependent deacetylase; SIR2, sirtuin, SIR2TM, SIRT1, nicotinamide, hydrolase; HET: ALY; 1.40A {Thermotoga maritima} SCOP: c.31.1.5 PDB: 2h2d_A* 2h2f_A 2h2g_A* 2h2h_A* 2h2i_A* 2h4f_A* 2h4j_A* 3d4b_A* 3d81_A* 3pdh_A* 2h4h_A* 3jr3_A* 2h59_A*
Probab=35.48 E-value=36 Score=29.86 Aligned_cols=53 Identities=11% Similarity=0.161 Sum_probs=31.7
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccccccccC--CCCCCccHHHHHHHHHHHHh
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQVLQETD--LTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~~~--~~~l~~n~~l~~~I~~~~~~ 79 (407)
.||++|++..+.+.+..+..+.||.|+..+.++- |.+..|...+.+. .+|.++
T Consensus 126 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~lrP~vv~FgE~lp~~~~~~a-~~~~~~ 180 (246)
T 1yc5_A 126 RCEKKYTVEDVIKKLESSDVPLCDDCNSLIRPNIVFFGENLPQDALREA-IGLSSR 180 (246)
T ss_dssp TTCCEEEHHHHHHHTTTCSSCBCTTTCCBEEEEECCBTSBCCHHHHHHH-HHHHHH
T ss_pred CCCCCCcHHHHHHHhccCCCCCCCCCCCccCcceEECCCCCCHHHHHHH-HHHHhc
Confidence 5888998887766554323578999998876531 1233454445433 344443
No 255
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=34.87 E-value=4.1 Score=29.58 Aligned_cols=30 Identities=13% Similarity=0.112 Sum_probs=17.7
Q ss_pred ccCccccccCcC-----ceecC-CcccccHHHHHHH
Q 040073 10 FLCPISLQLMRD-----PVTVS-TGITYDRVNIERW 39 (407)
Q Consensus 10 ~~Cpi~~~~~~d-----Pv~~~-~g~t~~r~~i~~~ 39 (407)
..||=|...|.. +|+-+ ||+.||..|-..|
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w 61 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQW 61 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBC
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCCch
Confidence 359977775531 24443 6777766665554
No 256
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.32 E-value=1.1e+02 Score=26.68 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=79.1
Q ss_pred HHHHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHH-HHHHhcCChhHHHHHHHHHHHhhccCC-ch
Q 040073 142 EFLATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESL-MRVLKCGNYQSRSYAIMLLKSIFEVAD-PF 219 (407)
Q Consensus 142 ~~Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~L-v~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~ 219 (407)
..+.+++.+... +--++.+++.+..+.... . .+..+ -..+.++++..+.-+.+++.|+-.+.. .+
T Consensus 59 ~~~~ki~~~WP~----~fP~lDllRl~~~~~~~~-~--------~l~~~l~~~~~~~~~~~~ml~lR~l~NlF~~~~~g~ 125 (253)
T 3gae_A 59 SFANTIRSNWEI----KTPAYDIVRLIVKKLPYS-S--------DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGV 125 (253)
T ss_dssp HHHHHHHHHCSC----CHHHHHHHHHHGGGCSCG-G--------GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhCCc----cchHHHHHHHHHcCCchH-H--------HHHHHHHHhcCCCchhHHHHHHHHHHHcccCCchHH
Confidence 444466655552 344666666655544321 1 22222 233345577889999999999987777 34
Q ss_pred hhhhchhhhHHHHHHHcccC--C---CCCHHHHHHHHHHHHHhCCC-CchHHHHHhcCchHHHHHHhhc--------ccc
Q 040073 220 QLISVKQEFFTEIVNVLRDH--H---QFSQQASKAALKLLVELCPW-GRNRIKAVEGGGVSVLVDLLLD--------VTE 285 (407)
Q Consensus 220 ~~i~~~~g~i~~Lv~lL~~~--~---~~~~~~~~~A~~aL~~L~~~-~~n~~~~v~~G~v~~Lv~lL~~--------~~~ 285 (407)
..+.. ......+++.+.+. + ..+..++-+++..++|++.. ..++. +......+++.+.. ..+
T Consensus 126 ~l~~~-~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~---~~e~~~~l~~~i~~~~~~~e~~~~d 201 (253)
T 3gae_A 126 KLLES-NQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQEC 201 (253)
T ss_dssp HHHTS-HHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS---CTTHHHHHHHHHHTTTTTSHHHHHS
T ss_pred HHHhc-chhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHhcccccccCC
Confidence 44433 34455566554221 0 01456888888999999872 11111 12234455555542 114
Q ss_pred hhHHHHHHHHHHHHhc
Q 040073 286 RRVCELMLNVLDLLCR 301 (407)
Q Consensus 286 ~~~~~~al~~L~~L~~ 301 (407)
.+..-.++-+|.+|..
T Consensus 202 ~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 202 EEAAYRLTVAYGNLAT 217 (253)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 5666677777777664
No 257
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=34.15 E-value=11 Score=31.63 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=37.4
Q ss_pred CCcccCccccccCcC---ceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRD---PVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~d---Pv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|+-|.|..|...+.+ +....-|.-||+.+-.+-+.. ...|+.|++++..
T Consensus 30 ~~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~--~~~C~~C~~~I~~ 81 (188)
T 1rut_X 30 SRCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN--SGACSACGQSIPA 81 (188)
T ss_dssp GGGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC--CEECTTTCCEECT
T ss_pred ccCcccCCCCcccccCCceEEEeCCcccccccccccccc--CCccccCCCcccc
Confidence 455899999999885 777789999999987765521 1269999887753
No 258
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=33.05 E-value=29 Score=23.82 Aligned_cols=45 Identities=7% Similarity=-0.057 Sum_probs=32.6
Q ss_pred CCcccCccccccCcC-ceecCCcccccH-HHHHHHHhcCCCCCCccccccc
Q 040073 7 PAHFLCPISLQLMRD-PVTVSTGITYDR-VNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 7 p~~~~Cpi~~~~~~d-Pv~~~~g~t~~r-~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
|+-|.|..|...+.+ +....-|.-||+ .+-.+-+ ...|-.|+..+
T Consensus 25 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f----~~~C~~C~~~~ 71 (76)
T 1iml_A 25 RPCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMF----GPKGFGRGGAE 71 (76)
T ss_dssp TTTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHS----SCCCSSCCCSS
T ss_pred CCCCCccccCccCCCCceECcCCeEeeCHHHHHHHh----CccCCCcCCce
Confidence 455899999988877 666778999998 5765544 34577776544
No 259
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.03 E-value=19 Score=23.92 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=26.1
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
..|.|++|+..|...-.+.- + ....|+.|+..+..
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~--------------~-~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSR--------------R-KTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCC--------------S-SSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCc--------------C-CCCCCCCCChhhcC
Confidence 34899999998877655543 2 37889999988765
No 260
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=32.54 E-value=17 Score=24.07 Aligned_cols=37 Identities=19% Similarity=0.486 Sum_probs=23.7
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~ 57 (407)
|.|++|+..|..+ +.+.+.... ...+.|+.|++.+..
T Consensus 5 y~C~~C~k~F~~~-----------~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 5 FFCNFCGKTYRDA-----------SGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp EECTTTCCEESSH-----------HHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred ccCCCCCCEeCCH-----------HHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 7888887766654 334443322 135789999988754
No 261
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=32.32 E-value=1.3e+02 Score=32.43 Aligned_cols=94 Identities=4% Similarity=0.080 Sum_probs=56.6
Q ss_pred hHHHHHHHHHhcCCCh--hHHHhHhhccchhhHHHHHHHHhcC-ChhHH----HHHHHHHHHhhccCCchhhhhchhhhH
Q 040073 157 ECDEALSILYHLNVSE--SYLKSIVINNGEEFLESLMRVLKCG-NYQSR----SYAIMLLKSIFEVADPFQLISVKQEFF 229 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~--~~~~~~i~~~gg~~i~~Lv~lL~~~-~~~~~----~~a~~~L~~Ls~~~~~~~~i~~~~g~i 229 (407)
..+.++++++.++..- +.-+.++.. +++.|+.+.... ..+-+ ...+.+++..+.--........ ..+
T Consensus 495 ~lea~~~aigaIag~~~~~~E~~~Lp~----vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~--~vl 568 (1073)
T 3gjx_A 495 NLNTLCWAIGSISGAMHEEDEKRFLVT----VIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLK--TVV 568 (1073)
T ss_dssp HHHHHHHHHHHTTTSSCHHHHHHHHHH----HHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH--HHH
T ss_pred HHhHHHHHHHHHHCcCCcccccchHHH----HHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHH--HHH
Confidence 4888899999886422 222344442 688888887653 22222 2223444443322112222322 356
Q ss_pred HHHHHHcccCCCCCHHHHHHHHHHHHHhCC
Q 040073 230 TEIVNVLRDHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 230 ~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
..|++.+.+. ++.++.+|+.|+..+|.
T Consensus 569 ~~L~~~m~~~---~~~vq~aA~~af~~i~~ 595 (1073)
T 3gjx_A 569 NKLFEFMHET---HDGVQDMACDTFIKIAQ 595 (1073)
T ss_dssp HHHHHHTTCC---STTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHHHH
Confidence 6777777776 88999999999999986
No 262
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=32.25 E-value=27 Score=22.15 Aligned_cols=38 Identities=13% Similarity=0.383 Sum_probs=23.6
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
.|.|++|...|..+ ..+....... ..+.||.|+..+..
T Consensus 2 ~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 42 (60)
T 2adr_A 2 SFVCEVCTRAFARQ-----------EHLKRHYRSHTNEKPYPCGLCNRAFTR 42 (60)
T ss_dssp CBCCTTTCCCBSCH-----------HHHHHHHHTTTSSCSEECTTTCCEESS
T ss_pred cCcCCCCccccCCH-----------HHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 37788887766554 3444444321 24679999887654
No 263
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.10 E-value=22 Score=25.42 Aligned_cols=38 Identities=18% Similarity=0.261 Sum_probs=24.9
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
.+.|++|+..|.. +..+.+..... ..+.|+.|++.+..
T Consensus 28 ~h~C~~Cgk~F~~-----------~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 68 (85)
T 2lv2_A 28 CHLCPVCGESFAS-----------KGAQERHLRLLHAAQVFPCKYCPATFYS 68 (85)
T ss_dssp TEECTTSCCEESS-----------HHHHHHHHHTTSCSSSEECTTSSCEESS
T ss_pred CEECCCCCCCcCc-----------HHHHhhhhhhccCCCccCCCCCCCEeCC
Confidence 3678888776654 34566665432 24679999987754
No 264
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=32.02 E-value=40 Score=23.24 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=10.2
Q ss_pred CCcccCcc--ccccCcC
Q 040073 7 PAHFLCPI--SLQLMRD 21 (407)
Q Consensus 7 p~~~~Cpi--~~~~~~d 21 (407)
+..|.|++ |...|..
T Consensus 3 ~~~~~C~~~~C~~~f~~ 19 (89)
T 2wbs_A 3 TATHTCDYAGCGKTYTK 19 (89)
T ss_dssp CCCEECCSTTTCCEESS
T ss_pred CCCeeCCCCCCCCcCCC
Confidence 45678888 8776643
No 265
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=31.69 E-value=1.4e+02 Score=26.18 Aligned_cols=63 Identities=21% Similarity=0.301 Sum_probs=44.6
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVE 256 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~ 256 (407)
+++.++.+-.+.+.++|...+..|...+.... .+ ....++.|..+++++ ++.+.+.+..+..+
T Consensus 54 ~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~---~l--~~~~l~~L~~Ll~d~---d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 54 FLESVLSLAHDSNMEVRKQVVAFVEQVCKVKV---EL--LPHVINVVSMLLRDN---SAQVIKRVIQACGS 116 (257)
T ss_dssp HHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---GG--HHHHHHHHHHHTTCS---CHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCChHHHHHHHHHHHHHHHHHHH---HH--HHHHHHHHHHHHcCC---CHHHHHHHHHHHHH
Confidence 67777776556788899999999988764322 12 235688888999877 88888877755433
No 266
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=31.00 E-value=15 Score=23.13 Aligned_cols=37 Identities=11% Similarity=0.276 Sum_probs=23.1
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
|.|++|...|..+ ..+..+.... ..+.|+.|+..+..
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 41 (57)
T 1bbo_A 2 YICEECGIRXKKP-----------SMLKKHIRTHTDVRPYHCTYCNFSFKT 41 (57)
T ss_dssp CBCTTTCCBCSSH-----------HHHHHHHHHTSSCCCEECSSSSCEESS
T ss_pred CcCCCCcCcCCCH-----------HHHHHHHHhcCCCCCccCCCCCchhcC
Confidence 6788888777654 3344444321 24679999887654
No 267
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.96 E-value=35 Score=20.50 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=20.6
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQ 53 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~ 53 (407)
..|.|++|...|.. +..+.++.... ..+.|+.|++
T Consensus 11 k~~~C~~C~k~f~~-----------~~~L~~H~~~H~~~k~~~C~~C~k 48 (48)
T 2epr_A 11 KQVACEICGKIFRD-----------VYHLNRHKLSHSGEKPYSSGPSSG 48 (48)
T ss_dssp CSEEETTTTEEESS-----------HHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred cCeeCCCCCcccCC-----------HHHHHHHHHhcCCCCCccCCCCCC
Confidence 34778877665554 34455554432 2467998863
No 268
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=30.39 E-value=19 Score=26.38 Aligned_cols=46 Identities=11% Similarity=0.140 Sum_probs=33.6
Q ss_pred CCcccCccccccCcCc-eecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 7 PAHFLCPISLQLMRDP-VTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
|+=|.|..|...+.+. ....-|..||+.+-.+ .. ...|..|++++.
T Consensus 31 ~~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~---~~-~~~C~~C~~~I~ 77 (101)
T 2cup_A 31 DTCFRCAKCLHPLANETFVAKDNKILCNKCTTR---ED-SPKCKGCFKAIV 77 (101)
T ss_dssp TTTCCCSSSCCCTTSSCCEEETTEEECHHHHTT---CC-CCBCSSSCCBCC
T ss_pred hcCCcccccCCCCCcCeeECcCCEEEChhHhhh---hc-CCccccCCCccc
Confidence 3448999999888664 4566899999887432 22 567999988876
No 269
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=30.33 E-value=52 Score=26.72 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=34.0
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|+-|.|..|...+.+--...-|.-||+.+-.+-+ ...|..|++++..
T Consensus 31 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~~C~~C~~~I~~ 77 (169)
T 2rgt_A 31 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPP 77 (169)
T ss_dssp TTTSBCTTTCCBCCSCCEESSSCEECHHHHHHHH----SCBCTTTCCBCCT
T ss_pred cccCccCCCCCcCCCCCcccCCeeeecccccccc----cccccccccccCC
Confidence 4558999999888775445678999998876654 3457777776543
No 270
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=30.32 E-value=1.9e+02 Score=25.18 Aligned_cols=129 Identities=8% Similarity=0.002 Sum_probs=75.3
Q ss_pred HHHHHHHHHHhhccCCchhhhhchhhhHHHHHH-HcccCCCCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHH
Q 040073 202 RSYAIMLLKSIFEVADPFQLISVKQEFFTEIVN-VLRDHHQFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDL 279 (407)
Q Consensus 202 ~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~l 279 (407)
+--+..+++-+..+.... +.+..++. .+.+. ++..+--+++++.|+-.++. ++..+.+......+++.
T Consensus 71 ~fP~lDllRl~~~~~~~~-------~~l~~~l~~~~~~~---~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~ 140 (253)
T 3gae_A 71 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK---NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFET 140 (253)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS---SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHH
T ss_pred cchHHHHHHHHHcCCchH-------HHHHHHHHHhcCCC---chhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHH
Confidence 344566666655554432 22222332 23344 77889999999999999888 67766554345555555
Q ss_pred hhcc-------cchhHHHHHHHHHHHHhcCHhh-HHHHHhccCchHHHHHHHHc---------CCchhhHHHHHHHHHHh
Q 040073 280 LLDV-------TERRVCELMLNVLDLLCRCAEG-RAELLKHGAGLAVVSKKILR---------VSHAASDRAVRILCSVC 342 (407)
Q Consensus 280 L~~~-------~~~~~~~~al~~L~~L~~~~~~-r~~i~~~~g~i~~Lv~~l~~---------~s~~~~e~a~~~L~~l~ 342 (407)
+.+. .+..++-.++.++.|++..-.. +. .......++..+.. .+.++.-.++-+|.++.
T Consensus 141 i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~ 216 (253)
T 3gae_A 141 IDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLA 216 (253)
T ss_dssp SCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHH
Confidence 4221 1456777777888888863211 11 01234456665553 24566677777777777
Q ss_pred cc
Q 040073 343 KF 344 (407)
Q Consensus 343 ~~ 344 (407)
..
T Consensus 217 ~~ 218 (253)
T 3gae_A 217 TV 218 (253)
T ss_dssp HH
T ss_pred hC
Confidence 54
No 271
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=30.25 E-value=3.6e+02 Score=25.58 Aligned_cols=142 Identities=11% Similarity=0.060 Sum_probs=83.2
Q ss_pred HHHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhh
Q 040073 144 LATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLI 222 (407)
Q Consensus 144 Lv~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i 222 (407)
+.+++.+... +--++.+|+.+..+.... + .+..++ ..+.+.++..+.-+.+++.||-.....-..+
T Consensus 233 ~~kil~~WP~----~FPaLDLLRl~v~~p~~~-------~--~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~l 299 (425)
T 3pst_A 233 ANTIRSNWEI----KTPAYDIVRLIVKKLPYS-------S--DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKL 299 (425)
T ss_dssp HHHHHHHCSC----CHHHHHHHHHHGGGCSCG-------G--GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHH
T ss_pred HHHHHHhCCc----ccHHHHHHHHHHcCCchH-------H--HHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHH
Confidence 3466666552 444777777666544321 1 222222 3344567888899999999998777644444
Q ss_pred hchhhhHHHHHHHcccC----C-CCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhhc--------ccchhH
Q 040073 223 SVKQEFFTEIVNVLRDH----H-QFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLLD--------VTERRV 288 (407)
Q Consensus 223 ~~~~g~i~~Lv~lL~~~----~-~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~~--------~~~~~~ 288 (407)
.........+++.+... . ..+..++-+++..++|++.... .+. +...+..+++.+.. ..+.+.
T Consensus 300 l~~~~~~~~i~~~i~~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~---~~el~~~l~e~l~~~~g~~E~~~~d~EA 376 (425)
T 3pst_A 300 LESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEA 376 (425)
T ss_dssp HTSHHHHHHHHHHSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHH
T ss_pred hhCchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHH
Confidence 44333456666665321 0 0145688888889999987311 111 12344566666651 125677
Q ss_pred HHHHHHHHHHHhc
Q 040073 289 CELMLNVLDLLCR 301 (407)
Q Consensus 289 ~~~al~~L~~L~~ 301 (407)
.-.++-+|.+|..
T Consensus 377 ~yRlLVALGtLv~ 389 (425)
T 3pst_A 377 AYRLTVAYGNLAT 389 (425)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 7888888888875
No 272
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=40 Score=22.61 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=13.0
Q ss_pred ccCccccccCcCc-eecCCcccccHHHHHHH
Q 040073 10 FLCPISLQLMRDP-VTVSTGITYDRVNIERW 39 (407)
Q Consensus 10 ~~Cpi~~~~~~dP-v~~~~g~t~~r~~i~~~ 39 (407)
|.|..|...+.+- ....-|.-||+.+-.+-
T Consensus 32 F~C~~C~~~L~~~~f~~~~g~~yC~~c~~~~ 62 (70)
T 2d8x_A 32 FRCDLCQEVLADIGFVKNAGRHLCRPCHNRE 62 (70)
T ss_dssp SBCSSSCCBCSSSCCEEETTEEECHHHHHHH
T ss_pred CEeCCCCCcCCCCccEeECCeEECHHHhhhh
Confidence 4555554444432 22234444555444443
No 273
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.68 E-value=11 Score=24.72 Aligned_cols=13 Identities=15% Similarity=0.365 Sum_probs=10.5
Q ss_pred CCCCccccccccc
Q 040073 45 NNTCPVTKQVLQE 57 (407)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (407)
.+.|+.|+..+..
T Consensus 39 ~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 39 TFRCTFCHTEVEE 51 (62)
T ss_dssp EEBCSSSCCBCEE
T ss_pred CEECCCCCCcccc
Confidence 4689999988765
No 274
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=29.62 E-value=14 Score=32.72 Aligned_cols=35 Identities=14% Similarity=0.075 Sum_probs=25.5
Q ss_pred CCCCccccccccccCCCCCCccHHH-HHHHHHHHHhcc
Q 040073 45 NNTCPVTKQVLQETDLTSTTPNHTL-RRLIQAWCTINA 81 (407)
Q Consensus 45 ~~~cP~~~~~~~~~~~~~l~~n~~l-~~~I~~~~~~~~ 81 (407)
.+.||+|...+.+ |+ .+.-.|++ +..|..|...++
T Consensus 208 ~~~c~i~~~~~~d-Pv-~~~~gh~f~~~~i~~~~~~~~ 243 (281)
T 2c2l_A 208 YLCGKISFELMRE-PC-ITPSGITYDRKDIEEHLQRVG 243 (281)
T ss_dssp TTBCTTTCSBCSS-EE-ECSSCCEEETTHHHHHHHHTC
T ss_pred ccCCcCcCCHhcC-Ce-ECCCCCEECHHHHHHHHHHCC
Confidence 4789999998877 54 33335555 889999988755
No 275
>1j8f_A SIRT2, sirtuin 2, isoform 1, silencing INFO; gene regulation, transferase; 1.70A {Homo sapiens} SCOP: c.31.1.5
Probab=29.30 E-value=27 Score=32.15 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=22.5
Q ss_pred CcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 27 TGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 27 ~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
||++|++..+.+.......+.||.|+-.+.+
T Consensus 167 C~~~~~~~~~~~~i~~~~~P~C~~Cgg~lrP 197 (323)
T 1j8f_A 167 CRHEYPLSWMKEKIFSEVTPKCEDCQSLVKP 197 (323)
T ss_dssp TCCEECHHHHHHHHHTTCCCBCTTTCCBEEE
T ss_pred cCccccHHHHHHhhccCCCCCCcCCCCccCC
Confidence 8889998776654433335789999987765
No 276
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.80 E-value=62 Score=18.94 Aligned_cols=13 Identities=8% Similarity=0.286 Sum_probs=8.6
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~F~~ 24 (46)
T 2ytn_A 12 PYKCNECGKVFTQ 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeECCCCCCeeCC
Confidence 3778777766554
No 277
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=28.72 E-value=3.7e+02 Score=25.16 Aligned_cols=13 Identities=8% Similarity=0.059 Sum_probs=7.8
Q ss_pred hChHHHHHHHHhc
Q 040073 357 VGVVSKLCLVLQV 369 (407)
Q Consensus 357 ~g~i~~Ll~ll~~ 369 (407)
.|.+..|+.+++.
T Consensus 224 ~~lLd~LL~~l~~ 236 (386)
T 3o2t_A 224 KAALEQLLKFMVH 236 (386)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcc
Confidence 3566666666664
No 278
>1ma3_A SIR2-AF2, transcriptional regulatory protein, SIR2 family; enzyme-substrate complex, protein binding, transcription; HET: ALY MES; 2.00A {Archaeoglobus fulgidus} SCOP: c.31.1.5 PDB: 1s7g_A* 1yc2_A*
Probab=28.44 E-value=44 Score=29.38 Aligned_cols=53 Identities=13% Similarity=0.049 Sum_probs=30.8
Q ss_pred CCcccccHHHHHHHHhcCCCCCCccccc-cccccC--CCCCCccHHHHHHHHHHHHh
Q 040073 26 STGITYDRVNIERWLFTCKNNTCPVTKQ-VLQETD--LTSTTPNHTLRRLIQAWCTI 79 (407)
Q Consensus 26 ~~g~t~~r~~i~~~~~~~~~~~cP~~~~-~~~~~~--~~~l~~n~~l~~~I~~~~~~ 79 (407)
.||++|++..+.+.+.....+.||.|+. .+.++- |.+..|...+.+. ..|..+
T Consensus 128 ~C~~~~~~~~~~~~~~~~~~p~C~~Cgg~~lrP~Vv~FgE~lp~~~~~~a-~~~~~~ 183 (253)
T 1ma3_A 128 DCHETYDWSEFVEDFNKGEIPRCRKCGSYYVKPRVVLFGEPLPQRTLFEA-IEEAKH 183 (253)
T ss_dssp TTCCEEEGGGTHHHHHTTCCCCCTTTCCSCEEEEECCBTSBCCHHHHHHH-HHHHHH
T ss_pred CCCCcCcHHHHHHHhccCCCCCCCCCCCccccceEEEeCCCCCHHHHHHH-HHHHHh
Confidence 5778888776665554333578999998 776531 1233454445443 345444
No 279
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.32 E-value=48 Score=22.14 Aligned_cols=31 Identities=13% Similarity=0.190 Sum_probs=16.1
Q ss_pred cccCccccccCcC-ceecCCcccccHHHHHHH
Q 040073 9 HFLCPISLQLMRD-PVTVSTGITYDRVNIERW 39 (407)
Q Consensus 9 ~~~Cpi~~~~~~d-Pv~~~~g~t~~r~~i~~~ 39 (407)
-|.|..|...+.+ +....-|.-||+.+-.+.
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~ 62 (70)
T 2d8z_A 31 CFVCTACRKQLSGQRFTARDDFAYCLNCFCDL 62 (70)
T ss_dssp TSBCSSSCCBCTTSCCEESSSSEECHHHHHHH
T ss_pred CCccCCCCCcCCcCceEeeCCeEECHHHHHHH
Confidence 3566666655543 333445566665554443
No 280
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=28.19 E-value=39 Score=27.92 Aligned_cols=47 Identities=6% Similarity=0.115 Sum_probs=32.6
Q ss_pred CCcccCccccccCcCceecCCcccccHHHHHHHHhcCCCCCCccccccccc
Q 040073 7 PAHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQE 57 (407)
Q Consensus 7 p~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~~ 57 (407)
|+-|.|..|...+.+---..-|.-||+.+-.+-+ ...|..|++++..
T Consensus 85 ~~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f----~~kC~~C~~~I~~ 131 (182)
T 2jtn_A 85 SKCLKCSDCHVPLAERCFSRGESVYCKDDFFKRF----GTKCAACQLGIPP 131 (182)
T ss_dssp SSTTSCTTTCCCCSSCCEEETTEEECHHHHHHTT----SCCCTTTCCCCCS
T ss_pred cccCccCCCCCccCCCceeECCEeeecCcccccc----ccccccCCCccCC
Confidence 4558888888887764334578889887754432 4578888887654
No 281
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.06 E-value=27 Score=23.91 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=16.1
Q ss_pred CcccCccccccCc--CceecCCcccccHHHHHH
Q 040073 8 AHFLCPISLQLMR--DPVTVSTGITYDRVNIER 38 (407)
Q Consensus 8 ~~~~Cpi~~~~~~--dPv~~~~g~t~~r~~i~~ 38 (407)
+-|.|..|...+. +.....-|..||+.|-.+
T Consensus 30 ~CF~C~~C~~~L~~~~~f~~~~~~~yC~~C~~~ 62 (73)
T 1wig_A 30 SCALCVRCGQMFAEGEEMYLQGSSIWHPACRQA 62 (73)
T ss_dssp TTSCCSSSCCCCCSSCCCEEETTEEECTTHHHH
T ss_pred CcCEeCCCCCCCCCCCeeEeeCCEEEChHHChH
Confidence 3466666666554 334444455555555444
No 282
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=28.04 E-value=5.4 Score=36.56 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=29.1
Q ss_pred CcccCccccccCcCceec----CCccc--ccHHHHHHHHhcCCCCCCcccccc
Q 040073 8 AHFLCPISLQLMRDPVTV----STGIT--YDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~----~~g~t--~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
+.=.||+|+....--|+. ..|+. +|--|=.+|-- ....||.|+..
T Consensus 181 ~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~--~R~~C~~Cg~~ 231 (309)
T 2fiy_A 181 SRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHY--VRIKCSHCEES 231 (309)
T ss_dssp TCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEEC--CTTSCSSSCCC
T ss_pred cCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEee--cCcCCcCCCCC
Confidence 346999999866555554 25644 45555555532 36789999986
No 283
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=27.60 E-value=31 Score=22.82 Aligned_cols=39 Identities=5% Similarity=-0.078 Sum_probs=24.4
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|... ..+.++.... ..+.|+.|+..+..
T Consensus 8 ~~~~C~~C~k~f~~~-----------~~L~~H~~~H~~~~~~~C~~C~~~f~~ 49 (70)
T 1x5w_A 8 HPEKCSECSYSCSSK-----------AALRIHERIHCTDRPFKCNYCSFDTKQ 49 (70)
T ss_dssp CSEECSSSSCEESSH-----------HHHHHHHGGGCCSCSEECSSSSCEESS
T ss_pred CCeECCCCCcccCCH-----------HHHHHHHHHcCCCCCEeCCCCCCccCC
Confidence 347888887766543 3445554331 24679999887644
No 284
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.13 E-value=50 Score=23.50 Aligned_cols=23 Identities=26% Similarity=0.587 Sum_probs=13.3
Q ss_pred cCccccccCcCceecCCcccccH
Q 040073 11 LCPISLQLMRDPVTVSTGITYDR 33 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~~r 33 (407)
.|+-|.+...+.++..-|.+|-.
T Consensus 27 ~C~~C~~~I~~~~v~a~~~~~H~ 49 (90)
T 2dar_A 27 MCAHCNQVIRGPFLVALGKSWHP 49 (90)
T ss_dssp BBSSSCCBCCSCEEEETTEEECT
T ss_pred CCccCCCEecceEEEECCccccc
Confidence 46666665556655555555543
No 285
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=26.97 E-value=3.2e+02 Score=23.89 Aligned_cols=87 Identities=11% Similarity=0.187 Sum_probs=48.4
Q ss_pred hHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHHHHHHhCCCCchHHHHHhcCchHHHHHH
Q 040073 200 QSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALKLLVELCPWGRNRIKAVEGGGVSVLVDL 279 (407)
Q Consensus 200 ~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~aL~~L~~~~~n~~~~v~~G~v~~Lv~l 279 (407)
+.+.....-+..|....+.. . ...+++.++.+..+. +.++++..+..|...+..+. . .-...++.|..+
T Consensus 30 ~~kl~~L~qa~el~~~~dp~--l--l~~~l~~il~~~~~~---~~~vrk~~~~Fi~e~~~~k~---~-l~~~~l~~L~~L 98 (257)
T 3gs3_A 30 STKCELLAKVQETVLGSCAE--L--AEEFLESVLSLAHDS---NMEVRKQVVAFVEQVCKVKV---E-LLPHVINVVSML 98 (257)
T ss_dssp HHHHHHHHHHHHHHTTTTGG--G--HHHHHHHHHGGGGCS---CHHHHHHHHHHHHHHHHHCG---G-GHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHh--H--HHHHHHHHHHhccCC---hHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHH
Confidence 45555555566655443321 1 135677777765555 77788888887777663211 1 111246666666
Q ss_pred hhcccchhHHHHHHHHHHH
Q 040073 280 LLDVTERRVCELMLNVLDL 298 (407)
Q Consensus 280 L~~~~~~~~~~~al~~L~~ 298 (407)
|.+. ++.+...+..+...
T Consensus 99 l~d~-d~~V~K~~I~~~~~ 116 (257)
T 3gs3_A 99 LRDN-SAQVIKRVIQACGS 116 (257)
T ss_dssp TTCS-CHHHHHHHHHHHHH
T ss_pred HcCC-CHHHHHHHHHHHHH
Confidence 6654 56666555554443
No 286
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=26.94 E-value=23 Score=23.84 Aligned_cols=39 Identities=13% Similarity=0.158 Sum_probs=24.4
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|... ..+.++... ...+.|+.|+..+..
T Consensus 16 ~~~~C~~C~k~f~~~-----------~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 16 KPYKCDRCQASFRYK-----------GNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CSBCCTTSSCCBSCH-----------HHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCeECCCCCceeCCH-----------HHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 348999988877654 233333322 124679999887754
No 287
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=26.76 E-value=23 Score=20.96 Aligned_cols=33 Identities=9% Similarity=0.268 Sum_probs=17.8
Q ss_pred cccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCcccc
Q 040073 9 HFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTK 52 (407)
Q Consensus 9 ~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~ 52 (407)
.|.|++|...|.. +..+.++... ...+.||.|+
T Consensus 10 ~~~C~~C~k~f~~-----------~~~l~~H~~~H~~~~~~~C~~cg 45 (45)
T 2epq_A 10 PYSCPVCGLRFKR-----------KDRMSYHVRSHDGSVGKSGPSSG 45 (45)
T ss_dssp SSEETTTTEECSC-----------HHHHHHHHHHHSCCCCCCCCCCC
T ss_pred CCcCCCCCcccCC-----------HHHHHHHHHHccCCCCCCCcCCC
Confidence 3677776665543 2334443322 2356788885
No 288
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=26.61 E-value=2e+02 Score=26.65 Aligned_cols=141 Identities=11% Similarity=0.051 Sum_probs=81.1
Q ss_pred HHHhhccCCCCchHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHH-HHHhcCChhHHHHHHHHHHHhhccCCchhhhh
Q 040073 145 ATIITKSDAGSDECDEALSILYHLNVSESYLKSIVINNGEEFLESLM-RVLKCGNYQSRSYAIMLLKSIFEVADPFQLIS 223 (407)
Q Consensus 145 v~lL~~~~~~~~~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~ 223 (407)
.+++.+... +--++.+|+.+..+.... + .+..++ ..+.+.++..+.-+.+++.|+-.....-+.+.
T Consensus 171 ~~i~~~Wp~----~FP~LDLLRl~v~~~~~~-------~--~l~~li~~~~~~~~~~n~MltlR~laNlF~~~~~g~~ll 237 (362)
T 3l3f_X 171 NTIRSNWEI----KTPAYDIVRLIVKKLPYS-------S--DIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL 237 (362)
T ss_dssp HHHHHHCSC----CHHHHHHHHHHGGGCSCG-------G--GGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH
T ss_pred HHHHhhCCc----cchHHHHHHHHhcCCChH-------H--HHHHHHHHhcCCCChhHHHHHHHHHHHhccCcchHHHHH
Confidence 366666653 444777777665544311 1 233232 33445678888999999999987776434344
Q ss_pred chhhhHHHHHHHccc----CC-CCCHHHHHHHHHHHHHhCCCCc-hHHHHHhcCchHHHHHHhh-----c---ccchhHH
Q 040073 224 VKQEFFTEIVNVLRD----HH-QFSQQASKAALKLLVELCPWGR-NRIKAVEGGGVSVLVDLLL-----D---VTERRVC 289 (407)
Q Consensus 224 ~~~g~i~~Lv~lL~~----~~-~~~~~~~~~A~~aL~~L~~~~~-n~~~~v~~G~v~~Lv~lL~-----~---~~~~~~~ 289 (407)
........+++.+.. .. ..+..++-+++..++|++.... .+. +...+..+++.+. . ..+.+..
T Consensus 238 ~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~---~~el~~~l~~~l~~~~g~~E~~~~d~EA~ 314 (362)
T 3l3f_X 238 ESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS---DLELLPIVADAINTKYGPLEEYQECEEAA 314 (362)
T ss_dssp TSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCS---CTTHHHHHHHHHHHTTTTSHHHHTSHHHH
T ss_pred hcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHhhccccccccCCHHHH
Confidence 332234455555421 10 0145688888889999987311 111 1223456666665 1 1256777
Q ss_pred HHHHHHHHHHhc
Q 040073 290 ELMLNVLDLLCR 301 (407)
Q Consensus 290 ~~al~~L~~L~~ 301 (407)
-.++-+|.+|..
T Consensus 315 yRlLVALGtL~~ 326 (362)
T 3l3f_X 315 YRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888875
No 289
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=26.26 E-value=71 Score=18.57 Aligned_cols=13 Identities=8% Similarity=-0.102 Sum_probs=8.7
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eop_A 12 PHECRECGKSFSF 24 (46)
T ss_dssp SCBCTTTCCBCSS
T ss_pred CeeCCCCCchhCC
Confidence 4778777766654
No 290
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=25.69 E-value=7.8 Score=27.63 Aligned_cols=31 Identities=26% Similarity=0.346 Sum_probs=21.9
Q ss_pred cccCcc--ccccCc-----Cceec------CCcccccHHHHHHH
Q 040073 9 HFLCPI--SLQLMR-----DPVTV------STGITYDRVNIERW 39 (407)
Q Consensus 9 ~~~Cpi--~~~~~~-----dPv~~------~~g~t~~r~~i~~~ 39 (407)
-..||- |...+. .+|+- .||+.||..|-+.|
T Consensus 25 ~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 25 GVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAY 68 (80)
T ss_dssp SCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEEC
T ss_pred cEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccc
Confidence 457888 776653 23444 48999999997776
No 291
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=25.59 E-value=43 Score=22.14 Aligned_cols=21 Identities=14% Similarity=0.341 Sum_probs=9.3
Q ss_pred cCccccccCcCceecCCcccc
Q 040073 11 LCPISLQLMRDPVTVSTGITY 31 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~ 31 (407)
.|+-|.+...+.++..-|.+|
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~ 27 (66)
T 1nyp_A 7 ICGACRRPIEGRVVNAMGKQW 27 (66)
T ss_dssp EETTTTEECCSCEECCTTSBE
T ss_pred CCcccCCEecceEEEECcccc
Confidence 344444444444444444444
No 292
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=25.45 E-value=39 Score=24.42 Aligned_cols=37 Identities=14% Similarity=0.230 Sum_probs=21.4
Q ss_pred ccCccccccC-cCceecCCcccccHHHHHHHHh--cCCCCCCccccccccc
Q 040073 10 FLCPISLQLM-RDPVTVSTGITYDRVNIERWLF--TCKNNTCPVTKQVLQE 57 (407)
Q Consensus 10 ~~Cpi~~~~~-~dPv~~~~g~t~~r~~i~~~~~--~~~~~~cP~~~~~~~~ 57 (407)
|.|++|...| . .+..+..+.. ....+.|+.|++.+..
T Consensus 35 ~~C~~C~k~F~~-----------~~~~L~~H~~~h~~k~~~C~~Cgk~F~~ 74 (96)
T 2ctd_A 35 VSCPTCQAVGRK-----------TIEGLKKHMENCKQEMFTCHHCGKQLRS 74 (96)
T ss_dssp EECTTTCSCEES-----------SHHHHHHHHHHHCCCCCCCSSSCCCCSS
T ss_pred cCCCCCCCCccc-----------CHHHHHHHHHHHCCCCeECCCCCCeeCC
Confidence 5666665544 2 3444444432 1236789999887654
No 293
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=25.34 E-value=1.8e+02 Score=26.99 Aligned_cols=95 Identities=9% Similarity=0.032 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhcCCChhHHHhHhhccchhhHHHHHHHHh--------cCChhHHHHHHHHHHHhhccCCchhhhhchhhh
Q 040073 157 ECDEALSILYHLNVSESYLKSIVINNGEEFLESLMRVLK--------CGNYQSRSYAIMLLKSIFEVADPFQLISVKQEF 228 (407)
Q Consensus 157 ~~~~a~~~L~~L~~~~~~~~~~i~~~gg~~i~~Lv~lL~--------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~ 228 (407)
.+--+++++.|+-.+..-.+.++.... ....+++.+. ..+..++..++.++.|++........- ...
T Consensus 215 n~MltlR~laNlF~~~~~g~~ll~~~~--~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~---~el 289 (362)
T 3l3f_X 215 LTMLTVRILVNCFNNENWGVKLLESNQ--VYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD---LEL 289 (362)
T ss_dssp HHHHHHHHHHHHTTCTTTHHHHHTSHH--HHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC---TTH
T ss_pred HHHHHHHHHHHhccCcchHHHHHhcch--hHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch---HHH
Confidence 477788888998766642344554321 2333444331 124567888999999997542110000 123
Q ss_pred HHHHHHHcc---------cCCCCCHHHHHHHHHHHHHhCC
Q 040073 229 FTEIVNVLR---------DHHQFSQQASKAALKLLVELCP 259 (407)
Q Consensus 229 i~~Lv~lL~---------~~~~~~~~~~~~A~~aL~~L~~ 259 (407)
...+++.+. .. +.++.-.++-||.+|..
T Consensus 290 ~~~l~~~l~~~~g~~E~~~~---d~EA~yRlLVALGtL~~ 326 (362)
T 3l3f_X 290 LPIVADAINTKYGPLEEYQE---CEEAAYRLTVAYGNLAT 326 (362)
T ss_dssp HHHHHHHHHHTTTTSHHHHT---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccccccccC---CHHHHHHHHHHHHHHHh
Confidence 445555554 24 78999999999999875
No 294
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.23 E-value=64 Score=22.27 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=9.7
Q ss_pred cCccccccCcCceecCCcccc
Q 040073 11 LCPISLQLMRDPVTVSTGITY 31 (407)
Q Consensus 11 ~Cpi~~~~~~dPv~~~~g~t~ 31 (407)
.|+-|.+...+.++..-|.+|
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~ 37 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKY 37 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCB
T ss_pred cCccCCCCcCceEEEECCcee
Confidence 355555444444444444444
No 295
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.85 E-value=68 Score=21.29 Aligned_cols=32 Identities=13% Similarity=0.183 Sum_probs=17.8
Q ss_pred cccCccccccCcC-ceecCCcccccHHHHHHHH
Q 040073 9 HFLCPISLQLMRD-PVTVSTGITYDRVNIERWL 40 (407)
Q Consensus 9 ~~~Cpi~~~~~~d-Pv~~~~g~t~~r~~i~~~~ 40 (407)
=|.|..|...+.+ .....-|..||+.+-.+.+
T Consensus 31 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~f 63 (69)
T 2cur_A 31 CFVCVTCSKKLAGQRFTAVEDQYYCVDCYKNFV 63 (69)
T ss_dssp TTBCTTTCCBCTTSCEEECSSCEEEHHHHHHHH
T ss_pred cCEECCCCCCCCCCccEeECCEEECHHHhHHHh
Confidence 3666666665543 3344556666666655544
No 296
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.80 E-value=67 Score=18.74 Aligned_cols=13 Identities=8% Similarity=0.360 Sum_probs=8.3
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2eml_A 12 PYECSVCGKAFSH 24 (46)
T ss_dssp SEECSSSCCEESS
T ss_pred CeeCCCcCCccCC
Confidence 3778877665544
No 297
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=24.72 E-value=20 Score=24.05 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=23.8
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|... ..+.+.... ...+.|+.|+..+..
T Consensus 13 k~~~C~~C~k~f~~~-----------~~L~~H~~~h~~~~~~~C~~C~~~f~~ 54 (72)
T 1x6e_A 13 KPYGCVECGKAFSRS-----------SILVQHQRVHTGEKPYKCLECGKAFSQ 54 (72)
T ss_dssp CCEECSSSCCEESSH-----------HHHHHHHHGGGCSCCEECSSSCCEESS
T ss_pred CCccCCCCCCccCCH-----------HHHHHHHHhcCCCCCeECCCCCcccCC
Confidence 348888887766543 233343332 125679999887654
No 298
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.62 E-value=23 Score=26.63 Aligned_cols=29 Identities=14% Similarity=0.289 Sum_probs=18.4
Q ss_pred CcCceecCCcccccHHHHHHHHhcCCCCCCcccccc
Q 040073 19 MRDPVTVSTGITYDRVNIERWLFTCKNNTCPVTKQV 54 (407)
Q Consensus 19 ~~dPv~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~ 54 (407)
+..|.=..||++| + + .-+....||.|+..
T Consensus 65 v~p~~C~~CG~~F-~----~--~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVF-K----A--EINIPSRCPKCKSE 93 (105)
T ss_dssp ECCCBBTTTCCBC-C----C--CSSCCSSCSSSCCC
T ss_pred EECcChhhCcCee-c----c--cCCCCCCCcCCCCC
Confidence 4455556799999 1 0 11235789999865
No 299
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=24.42 E-value=28 Score=17.66 Aligned_cols=11 Identities=18% Similarity=0.697 Sum_probs=6.1
Q ss_pred ccCccccccCc
Q 040073 10 FLCPISLQLMR 20 (407)
Q Consensus 10 ~~Cpi~~~~~~ 20 (407)
|.|++|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 1ard_A 3 FVCEVCTRAFA 13 (29)
T ss_dssp CBCTTTCCBCS
T ss_pred eECCCCCcccC
Confidence 55666655544
No 300
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=23.96 E-value=28 Score=26.68 Aligned_cols=10 Identities=10% Similarity=0.292 Sum_probs=8.1
Q ss_pred CC-CCcccccc
Q 040073 45 NN-TCPVTKQV 54 (407)
Q Consensus 45 ~~-~cP~~~~~ 54 (407)
.. .||.|+.+
T Consensus 89 ~~~~CP~Cgs~ 99 (119)
T 2kdx_A 89 DYGVCEKCHSK 99 (119)
T ss_dssp TTCCCSSSSSC
T ss_pred CCCcCccccCC
Confidence 56 79999876
No 301
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=23.63 E-value=32 Score=17.49 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=6.7
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1klr_A 3 YQCQYCEFRSAD 14 (30)
T ss_dssp CCCSSSSCCCSC
T ss_pred ccCCCCCCccCC
Confidence 456666555544
No 302
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.46 E-value=32 Score=17.33 Aligned_cols=11 Identities=18% Similarity=0.368 Sum_probs=5.4
Q ss_pred ccCccccccCc
Q 040073 10 FLCPISLQLMR 20 (407)
Q Consensus 10 ~~Cpi~~~~~~ 20 (407)
|.|+.|+..|.
T Consensus 3 ~~C~~C~~~f~ 13 (29)
T 2m0e_A 3 HKCPHCDKKFN 13 (29)
T ss_dssp CCCSSCCCCCC
T ss_pred CcCCCCCcccC
Confidence 44555555443
No 303
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=23.30 E-value=27 Score=17.42 Aligned_cols=12 Identities=8% Similarity=0.409 Sum_probs=6.1
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.|++|+..|..
T Consensus 2 ~~C~~C~k~f~~ 13 (27)
T 1znf_A 2 YKCGLCERSFVE 13 (27)
T ss_dssp CBCSSSCCBCSS
T ss_pred ccCCCCCCcCCC
Confidence 456655554443
No 304
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=22.79 E-value=19 Score=27.18 Aligned_cols=13 Identities=31% Similarity=0.731 Sum_probs=10.2
Q ss_pred CCCCccccccccc
Q 040073 45 NNTCPVTKQVLQE 57 (407)
Q Consensus 45 ~~~cP~~~~~~~~ 57 (407)
...||+|++++.+
T Consensus 47 g~~CPvCgs~l~~ 59 (112)
T 1l8d_A 47 KGKCPVCGRELTD 59 (112)
T ss_dssp SEECTTTCCEECH
T ss_pred CCCCCCCCCcCCH
Confidence 4579999998754
No 305
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.51 E-value=93 Score=18.01 Aligned_cols=12 Identities=8% Similarity=0.182 Sum_probs=7.4
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.|++|...|..
T Consensus 13 ~~C~~C~k~f~~ 24 (46)
T 2eq4_A 13 YNCKECGKSFSR 24 (46)
T ss_dssp CCBTTTTBCCSC
T ss_pred eECCCCCCccCc
Confidence 667776665544
No 306
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.24 E-value=88 Score=20.89 Aligned_cols=31 Identities=16% Similarity=0.156 Sum_probs=14.3
Q ss_pred ccCccccccCcC-ceecCCcccccHHHHHHHH
Q 040073 10 FLCPISLQLMRD-PVTVSTGITYDRVNIERWL 40 (407)
Q Consensus 10 ~~Cpi~~~~~~d-Pv~~~~g~t~~r~~i~~~~ 40 (407)
|.|..|...+.+ +....-|.-||+.+-.+.+
T Consensus 34 F~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~ 65 (72)
T 1x61_A 34 FVCSTCRAQLRGQHFYAVERRAYCEGCYVATL 65 (72)
T ss_dssp CBCSSSCCBCTTSCEEESSSCEEEHHHHHHHH
T ss_pred CcccccCCcCCcCcCEeeCCeEECHHHHHHHH
Confidence 455555544432 2333444555555544444
No 307
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=22.13 E-value=68 Score=18.77 Aligned_cols=13 Identities=8% Similarity=0.261 Sum_probs=8.3
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|...|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el6_A 12 PYKCSQCEKSFSG 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred CeECCCCCcccCC
Confidence 3777777665544
No 308
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=21.84 E-value=75 Score=18.46 Aligned_cols=13 Identities=8% Similarity=0.158 Sum_probs=8.2
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|+..|..
T Consensus 12 ~~~C~~C~k~f~~ 24 (46)
T 2el4_A 12 PYGCSQCAKTFSL 24 (46)
T ss_dssp SEECSSSSCEESS
T ss_pred ceECCCCCchhCC
Confidence 3777777665544
No 309
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=21.78 E-value=63 Score=24.79 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=24.0
Q ss_pred ccCccccccCcCce-ecCCcccccHHHHHHHHhcCCCCCCcccccccc
Q 040073 10 FLCPISLQLMRDPV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~~ 56 (407)
-.|+-|.+...+.. +..-|..|-+. -+.|-.|+.+|.
T Consensus 62 ~~C~~C~~~I~~~~~v~a~~~~wH~~----------CF~C~~C~~~L~ 99 (123)
T 2l4z_A 62 KRCAGCGGKIADRFLLYAMDSYWHSR----------CLKCSSCQAQLG 99 (123)
T ss_dssp SBBSSSSSBCCSSSEEEETTEEEETT----------TSBCTTTCCBGG
T ss_pred CcCcCCCCCcCCcEEEEeCCcEEccc----------ccCcCcCCCccc
Confidence 47888888777763 55567666443 345667776664
No 310
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=21.74 E-value=28 Score=17.73 Aligned_cols=12 Identities=25% Similarity=0.526 Sum_probs=6.9
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.|++|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (29)
T 1rik_A 3 FACPECPKRFMR 14 (29)
T ss_dssp EECSSSSCEESC
T ss_pred ccCCCCCchhCC
Confidence 566666655543
No 311
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=21.44 E-value=30 Score=19.15 Aligned_cols=13 Identities=23% Similarity=0.416 Sum_probs=9.4
Q ss_pred cccCccccccCcC
Q 040073 9 HFLCPISLQLMRD 21 (407)
Q Consensus 9 ~~~Cpi~~~~~~d 21 (407)
.|.|++|...|..
T Consensus 11 ~~~C~~C~k~f~~ 23 (37)
T 1p7a_A 11 PFQCPDCDRSFSR 23 (37)
T ss_dssp SBCCTTTCCCBSS
T ss_pred CccCCCCCcccCc
Confidence 4788888776654
No 312
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=21.37 E-value=24 Score=25.57 Aligned_cols=40 Identities=10% Similarity=0.307 Sum_probs=23.1
Q ss_pred CcccCccccccCcC----ce-ecCCcccccHHHHHHHHhcCCCCCCccccccc
Q 040073 8 AHFLCPISLQLMRD----PV-TVSTGITYDRVNIERWLFTCKNNTCPVTKQVL 55 (407)
Q Consensus 8 ~~~~Cpi~~~~~~d----Pv-~~~~g~t~~r~~i~~~~~~~~~~~cP~~~~~~ 55 (407)
..+.|++|+.++.. |. -++.|-.|+- --....||+|+..-
T Consensus 34 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fed--------lPddW~CPvCga~K 78 (87)
T 1s24_A 34 LKWICITCGHIYDEALGDEAEGFTPGTRFED--------IPDDWCCPDCGATK 78 (87)
T ss_dssp CEEEETTTTEEEETTSCCTTTTCCSCCCGGG--------CCTTCCCSSSCCCG
T ss_pred ceEECCCCCeEecCCcCCcccCcCCCCChhH--------CCCCCCCCCCCCCH
Confidence 45788888876542 22 2345555421 11256899998753
No 313
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=21.27 E-value=65 Score=24.23 Aligned_cols=12 Identities=33% Similarity=0.780 Sum_probs=7.1
Q ss_pred CCCCcccccccc
Q 040073 45 NNTCPVTKQVLQ 56 (407)
Q Consensus 45 ~~~cP~~~~~~~ 56 (407)
.+.|+.|+..+.
T Consensus 100 ~~~C~~C~k~f~ 111 (129)
T 2wbt_A 100 TKVCPVCKKEFT 111 (129)
T ss_dssp CCBCTTTCCBCS
T ss_pred CCCCCCCCcccC
Confidence 456777766543
No 314
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.26 E-value=32 Score=24.79 Aligned_cols=42 Identities=14% Similarity=0.235 Sum_probs=23.3
Q ss_pred CcccCccccccCc-CceecCCcccccHHHHHHHHh-cCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMR-DPVTVSTGITYDRVNIERWLF-TCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~-dPv~~~~g~t~~r~~i~~~~~-~~~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|. ..-.+ -+.- ...-. + ..+.|+.|++.+..
T Consensus 23 ~~~~C~~C~k~f~~~~~~L------~~H~-~~h~~~~-~~~~C~~C~k~F~~ 66 (98)
T 2gqj_A 23 GEAVCPTCNVVTRKTLVGL------KKHM-EVCQKLQ-DALKCQHCRKQFKS 66 (98)
T ss_dssp SCCCCTTTCCCCSSCSHHH------HHHH-HHHHHHH-HHHSCSSSCCCCSC
T ss_pred CCcCCCCCCCChhhhHHHH------HHHH-HHHcCCC-CCEECCCCCCccCC
Confidence 3488999888776 44222 1111 11111 1 25689999886644
No 315
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=21.19 E-value=2.4e+02 Score=26.40 Aligned_cols=59 Identities=15% Similarity=0.254 Sum_probs=29.7
Q ss_pred hHHHHHHHHhcCChhHHHHHHHHHHHhhccCCchhhhhchhhhHHHHHHHcccCCCCCHHHHHHHHH
Q 040073 186 FLESLMRVLKCGNYQSRSYAIMLLKSIFEVADPFQLISVKQEFFTEIVNVLRDHHQFSQQASKAALK 252 (407)
Q Consensus 186 ~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~A~~ 252 (407)
+++.++.+-...+.++|...+..|...+..+. ... ..+++.|..+|++. ++.+.+.+..
T Consensus 64 fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~---el~--~~~l~~L~~LL~d~---d~~V~K~~I~ 122 (386)
T 3o2t_A 64 FLDEIIAFQADKSIEVRKFVIGFIEEACKRDI---ELL--LKLIANLNMLLRDE---NVNVVKKAIL 122 (386)
T ss_dssp GHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCG---GGH--HHHHHHHHHHHTCS---SHHHHHHHHH
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHcCC---CHHHHHHHHH
Confidence 55555555555556666666666655543211 111 23455556666554 5555555443
No 316
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=21.17 E-value=38 Score=17.35 Aligned_cols=12 Identities=8% Similarity=0.420 Sum_probs=6.8
Q ss_pred ccCccccccCcC
Q 040073 10 FLCPISLQLMRD 21 (407)
Q Consensus 10 ~~Cpi~~~~~~d 21 (407)
|.|+.|+..|..
T Consensus 3 ~~C~~C~k~f~~ 14 (30)
T 1paa_A 3 YACGLCNRAFTR 14 (30)
T ss_dssp SBCTTTCCBCSS
T ss_pred cCCcccCcccCC
Confidence 566666555543
No 317
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=21.00 E-value=64 Score=21.59 Aligned_cols=39 Identities=10% Similarity=0.190 Sum_probs=24.1
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHhcC---CCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLFTC---KNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~~---~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|... ..+.++.... ..+.|+.|+..+..
T Consensus 17 ~~~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 17 RRYKCDECGKSFSHS-----------SDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp CSSBCSSSCCBCSCH-----------HHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCEECCCCCcccCCH-----------HHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 347888887766543 3455554331 24679999887644
No 318
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.67 E-value=47 Score=20.89 Aligned_cols=14 Identities=21% Similarity=0.422 Sum_probs=8.6
Q ss_pred CCCCCCcccCcccc
Q 040073 3 EIEVPAHFLCPISL 16 (407)
Q Consensus 3 ~~~~p~~~~Cpi~~ 16 (407)
+.++-....||+|+
T Consensus 17 el~~lP~IrCpyCG 30 (48)
T 4ayb_P 17 QLKVLPGVRCPYCG 30 (48)
T ss_dssp CSCCCSSSCCTTTC
T ss_pred HHhhCCCcccCccC
Confidence 34445566777776
No 319
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=20.41 E-value=25 Score=17.86 Aligned_cols=11 Identities=9% Similarity=0.147 Sum_probs=5.9
Q ss_pred ccCccccccCc
Q 040073 10 FLCPISLQLMR 20 (407)
Q Consensus 10 ~~Cpi~~~~~~ 20 (407)
|.|++|...|.
T Consensus 3 ~~C~~C~k~f~ 13 (29)
T 2m0f_A 3 LKCRECGKQFT 13 (29)
T ss_dssp EECTTTSCEES
T ss_pred ccCCCCCCccC
Confidence 45666555444
No 320
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.28 E-value=59 Score=22.77 Aligned_cols=15 Identities=7% Similarity=0.168 Sum_probs=10.7
Q ss_pred CcccCccccccCcCc
Q 040073 8 AHFLCPISLQLMRDP 22 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dP 22 (407)
..|.|++|...|...
T Consensus 7 ~~~~C~~C~~~f~~~ 21 (96)
T 2dmd_A 7 GPHKCEVCGKCFSRK 21 (96)
T ss_dssp CCCCBTTTTBCCCCH
T ss_pred cCeECCCCCCccCCH
Confidence 348899988877643
No 321
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.07 E-value=39 Score=22.81 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=23.8
Q ss_pred CcccCccccccCcCceecCCcccccHHHHHHHHh--cCCCCCCccccccccc
Q 040073 8 AHFLCPISLQLMRDPVTVSTGITYDRVNIERWLF--TCKNNTCPVTKQVLQE 57 (407)
Q Consensus 8 ~~~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~--~~~~~~cP~~~~~~~~ 57 (407)
..|.|++|...|...-. +.+. +..+.. ....+.|+.|+..+..
T Consensus 6 k~~~C~~C~k~f~~~~~------L~~H-~~~h~~~~~~~~~~C~~C~k~f~~ 50 (78)
T 2d9h_A 6 SGLQCEICGFTCRQKAS------LNWH-QRKHAETVAALRFPCEFCGKRFEK 50 (78)
T ss_dssp CCEECSSSCCEESSHHH------HHHH-HHHHHHHTTTCCEECTTTCCEESS
T ss_pred cCeECCCCCCeeCCHHH------HHHH-HHHhhccCCCcccCCCCCCchhCC
Confidence 34889988876665421 2111 112221 0135789999887644
No 322
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.05 E-value=69 Score=21.43 Aligned_cols=21 Identities=14% Similarity=0.093 Sum_probs=9.3
Q ss_pred cCccccccCc--CceecCCcccc
Q 040073 11 LCPISLQLMR--DPVTVSTGITY 31 (407)
Q Consensus 11 ~Cpi~~~~~~--dPv~~~~g~t~ 31 (407)
.|+-|.+... +.++..-|.+|
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~ 29 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTW 29 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCE
T ss_pred CCccCCCccccCccEEEECcccc
Confidence 3444554444 33444444444
No 323
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=20.04 E-value=39 Score=22.85 Aligned_cols=36 Identities=14% Similarity=0.331 Sum_probs=19.7
Q ss_pred ccCccccccCcCceecCCcccccHHHHHHHHhc---CCCCCCcccccccc
Q 040073 10 FLCPISLQLMRDPVTVSTGITYDRVNIERWLFT---CKNNTCPVTKQVLQ 56 (407)
Q Consensus 10 ~~Cpi~~~~~~dPv~~~~g~t~~r~~i~~~~~~---~~~~~cP~~~~~~~ 56 (407)
|.|++|...|... ..+.+.... .....|+.|+..+.
T Consensus 2 ~~C~~C~~~f~~~-----------~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (82)
T 2kmk_A 2 FDCKICGKSFKRS-----------STLSTHLLIHSDTRPYPCQYCGKRFH 40 (82)
T ss_dssp EECSSSCCEESSH-----------HHHHHHHHHHHTCCCEECSSSCCEES
T ss_pred ccCCCCcccccCc-----------hhHHHHHHHcCCCCCeeCCcCChhhC
Confidence 6788887766553 222232221 12456888876654
No 324
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=25.28 E-value=22 Score=17.75 Aligned_cols=11 Identities=9% Similarity=0.307 Sum_probs=4.9
Q ss_pred ccCccccccCc
Q 040073 10 FLCPISLQLMR 20 (407)
Q Consensus 10 ~~Cpi~~~~~~ 20 (407)
|.|++|+.-|.
T Consensus 3 ~~C~~C~k~f~ 13 (26)
T 2lvu_A 3 YVCERCGKRFV 13 (26)
Confidence 34554444443
Done!