BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040074
(148 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8G|A Chain A, Crystal Structure Of Nitrile Hydratase Mutant S113a
Complexed With Trimethylacetonitrile
pdb|3A8H|A Chain A, Crystal Structure Of Nitrile Hydratase Mutant S113a
Complexed With Trimethylacetamide
pdb|3A8L|A Chain A, Crystal Structure Of Photo-Activation State Of Nitrile
Hydratase Mutant S113a
Length = 207
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 65 DEPAVQPAVETELQASDDFP----PPLDHQKLYFRLTIVKEPRHEIDAMEEEL 113
D P ++ + L A +P PP ++ +R +V+EPR + M E+
Sbjct: 100 DTPTLKNVIVCSLXAXTAWPILGLPPTWYKSFEYRARVVREPRKVLSEMGTEI 152
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIKD-----ELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIKD-----ELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIKD-----ELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIKD-----ELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 28.5 bits (62), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIKD-----ELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 27.3 bits (59), Expect = 2.9, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
Query: 67 PAVQPAVETELQASDDFPPPLDHQKLYFRLTIVKEPRHEIDAMEEELKIK-----DELVQ 121
PAVQ +E +Q+ P + + ++T+ HE+D+ E KI E VQ
Sbjct: 540 PAVQKGIEEAMQSG----PLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQ 595
Query: 122 KQEKVIQE 129
K + VI E
Sbjct: 596 KGDPVILE 603
>pdb|3FBQ|A Chain A, The Crystal Structure Of The Conserved Domain Protein From
Bacillus Anthracis
Length = 292
Score = 26.6 bits (57), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 92 LYFRLTIVKEPRHEIDAMEEELKIKDEL 119
LY+ + K R E D+++ EL +KD+L
Sbjct: 178 LYYNQEVSKGARKEWDSVDVELTVKDDL 205
>pdb|4DYL|A Chain A, F-Bar Domain Of Human Fes Tyrosine Kinase
Length = 406
Score = 26.6 bits (57), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/38 (26%), Positives = 28/38 (73%)
Query: 99 VKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRD 136
V+ +H + ++ +EL + E+V ++++++ +L++ELR+
Sbjct: 304 VESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRN 341
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 93 YFRLTIVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKH 141
++RL +P ++ EEE++ KDE +Q+ ++ Q+ + EL++ KH
Sbjct: 839 WWRLFTKVKPLLQVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKH 887
>pdb|1LOX|A Chain A, Rabbit Reticulocyte 15-Lipoxygenase
Length = 662
Score = 26.2 bits (56), Expect = 7.3, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 42 PCLTEL---DLNKAIMPDFEAPLTDFDEPAVQPAVETELQASDDFPPPL-DHQKLYFRLT 97
PC L A + A L + + ++Q ++ +L PL HQ+ YF
Sbjct: 558 PCTMRLPPPTTKDATLETVMATLPNLKQSSLQMSIVWQLGRDQPIMVPLGQHQEEYFS-- 615
Query: 98 IVKEPRHEIDAMEEELKIKDELVQ-KQEKV 126
EPR ++ EEL I D+ ++ + EK+
Sbjct: 616 -GPEPRAVLEKFREELAIMDKEIEVRNEKL 644
>pdb|2P0M|A Chain A, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
pdb|2P0M|B Chain B, Revised Structure Of Rabbit Reticulocyte 15s-Lipoxygenase
Length = 662
Score = 26.2 bits (56), Expect = 7.9, Method: Composition-based stats.
Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 42 PCLTEL---DLNKAIMPDFEAPLTDFDEPAVQPAVETELQASDDFPPPL-DHQKLYFRLT 97
PC L A + A L + + ++Q ++ +L PL HQ+ YF
Sbjct: 558 PCTMRLPPPTTKDATLETVMATLPNLHQSSLQMSIVWQLGRDQPIMVPLGQHQEEYFS-- 615
Query: 98 IVKEPRHEIDAMEEELKIKDELVQ-KQEKV 126
EPR ++ EEL I D+ ++ + EK+
Sbjct: 616 -GPEPRAVLEKFREELAIMDKEIEVRNEKL 644
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,684,154
Number of Sequences: 62578
Number of extensions: 146423
Number of successful extensions: 571
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 563
Number of HSP's gapped (non-prelim): 35
length of query: 148
length of database: 14,973,337
effective HSP length: 90
effective length of query: 58
effective length of database: 9,341,317
effective search space: 541796386
effective search space used: 541796386
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)