Query 040074
Match_columns 148
No_of_seqs 13 out of 15
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 07:16:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040074.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040074hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gmj_A ATPase inhibitor; coile 75.5 5.6 0.00019 28.3 5.1 47 91-137 31-77 (84)
2 3nmd_A CGMP dependent protein 73.8 11 0.00037 26.0 6.2 43 99-141 21-66 (72)
3 1t3j_A Mitofusin 1; coiled coi 66.7 8.5 0.00029 27.7 4.5 34 91-124 35-74 (96)
4 3nmd_A CGMP dependent protein 61.9 22 0.00077 24.5 5.7 26 109-134 24-49 (72)
5 3hnw_A Uncharacterized protein 56.1 34 0.0012 25.1 6.2 43 84-126 61-105 (138)
6 1gmj_A ATPase inhibitor; coile 47.6 20 0.0007 25.4 3.7 17 130-146 45-61 (84)
7 2inr_A DNA topoisomerase 4 sub 43.8 24 0.00083 31.3 4.4 56 87-143 443-500 (514)
8 3zwl_E Eukaryotic translation 41.1 14 0.00047 23.8 1.8 18 116-133 10-27 (50)
9 1zxa_A CGMP-dependent protein 39.2 28 0.00096 23.6 3.2 31 105-135 26-56 (67)
10 2zqm_A Prefoldin beta subunit 37.2 74 0.0025 20.9 5.1 42 98-139 71-112 (117)
11 3ilw_A DNA gyrase subunit A; D 36.2 24 0.00084 31.0 3.2 46 98-143 417-462 (470)
12 3a7p_A Autophagy protein 16; c 35.7 85 0.0029 24.2 5.8 33 101-133 72-104 (152)
13 2nov_A DNA topoisomerase 4 sub 34.8 28 0.00096 30.8 3.4 56 87-143 419-476 (496)
14 1xi4_J LCA, clathrin light cha 29.0 1.1E+02 0.0038 20.5 4.9 39 105-143 21-60 (70)
15 1yke_B RNA polymerase II holoe 28.8 34 0.0012 25.5 2.5 44 80-123 63-111 (151)
16 3ghg_A Fibrinogen alpha chain; 28.8 77 0.0026 29.0 5.2 20 121-140 127-146 (562)
17 1ykh_B RNA polymerase II holoe 28.6 36 0.0012 24.6 2.6 44 80-123 63-111 (132)
18 3a7p_A Autophagy protein 16; c 26.9 86 0.0029 24.2 4.5 34 102-135 66-99 (152)
19 3r2p_A Apolipoprotein A-I; amp 26.6 1.8E+02 0.006 21.2 6.0 19 128-146 165-183 (185)
20 1ufz_A Hypothetical protein BA 26.3 34 0.0012 24.2 2.0 35 28-75 33-67 (83)
21 1gs9_A Apolipoprotein E, APOE4 26.1 54 0.0018 24.4 3.2 15 131-145 141-155 (165)
22 2b5u_A Colicin E3; high resolu 25.3 71 0.0024 29.2 4.4 66 78-144 269-367 (551)
23 3oja_B Anopheles plasmodium-re 25.0 1.1E+02 0.0038 24.8 5.1 36 100-135 452-487 (597)
24 1fxk_A Prefoldin; archaeal pro 24.9 1.2E+02 0.004 19.7 4.3 39 98-136 66-104 (107)
25 3r84_A Mediator of RNA polymer 24.2 31 0.0011 24.3 1.5 25 91-115 50-76 (86)
26 2p2u_A HOST-nuclease inhibitor 23.4 2.2E+02 0.0075 21.0 6.1 41 104-144 23-63 (171)
27 4gkw_A Spindle assembly abnorm 23.4 1.2E+02 0.0042 23.7 4.9 36 106-141 100-135 (167)
28 4fla_A Regulation of nuclear P 23.1 64 0.0022 24.1 3.1 116 23-145 21-147 (152)
29 2zvf_A Alanyl-tRNA synthetase; 22.8 1E+02 0.0035 21.5 4.0 19 112-130 22-41 (171)
30 3a7o_A Autophagy protein 16; c 22.2 92 0.0031 21.9 3.6 30 99-128 13-42 (75)
31 2j5u_A MREC protein; bacterial 21.9 78 0.0027 24.6 3.5 40 86-125 14-54 (255)
32 4dzo_A Mitotic spindle assembl 20.5 1.8E+02 0.0063 20.8 5.0 33 103-135 3-35 (123)
No 1
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=75.48 E-value=5.6 Score=28.25 Aligned_cols=47 Identities=17% Similarity=0.261 Sum_probs=30.5
Q ss_pred hhhhhhhhccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Q 040074 91 KLYFRLTIVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDR 137 (148)
Q Consensus 91 qlYF~lq~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdq 137 (148)
-.||+=+..|.|++=-.-|++||...-+-|+++++-|..+++-+++-
T Consensus 31 e~YfrqkekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 31 ERYFRARAKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35885554444443333447788877777888888888777777654
No 2
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=73.78 E-value=11 Score=26.05 Aligned_cols=43 Identities=23% Similarity=0.392 Sum_probs=29.0
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH---HHHHHhhh
Q 040074 99 VKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKE---LRDRLDKH 141 (148)
Q Consensus 99 ~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~ke---Lkdql~kH 141 (148)
...|+..+..-.|||+.||++|+..++.|++--.+ |+.+++|.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~~LqseLDKf 66 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQMLQNELDKY 66 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455566666778888888888888888775543 45555554
No 3
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.69 E-value=8.5 Score=27.72 Aligned_cols=34 Identities=21% Similarity=0.330 Sum_probs=25.2
Q ss_pred hhhh-hhh-----hccchhhhHHHHHHHhhhhHHHHHHHH
Q 040074 91 KLYF-RLT-----IVKEPRHEIDAMEEELKIKDELVQKQE 124 (148)
Q Consensus 91 qlYF-~lq-----~~e~lrkeIa~mEeELk~KdELi~kq~ 124 (148)
..+| ||. ....|..||+.|+.|+..=+.++.+-+
T Consensus 35 s~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK 74 (96)
T 1t3j_A 35 ATTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK 74 (96)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3488 886 667889999999999887666554433
No 4
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=61.93 E-value=22 Score=24.47 Aligned_cols=26 Identities=31% Similarity=0.442 Sum_probs=11.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 040074 109 MEEELKIKDELVQKQEKVIQELKKEL 134 (148)
Q Consensus 109 mEeELk~KdELi~kq~kliq~w~keL 134 (148)
+++.|+.|+|=|..+..+|.+..++|
T Consensus 24 Lq~~L~~K~eELr~kd~~I~eLEk~L 49 (72)
T 3nmd_A 24 LQYALQEKIEELRQRDALIDELELEL 49 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444
No 5
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=56.06 E-value=34 Score=25.06 Aligned_cols=43 Identities=23% Similarity=0.358 Sum_probs=29.4
Q ss_pred CCccchhhhhhhhh-hccchhhhHHHHHHHh-hhhHHHHHHHHHH
Q 040074 84 PPPLDHQKLYFRLT-IVKEPRHEIDAMEEEL-KIKDELVQKQEKV 126 (148)
Q Consensus 84 meaakklqlYF~lq-~~e~lrkeIa~mEeEL-k~KdELi~kq~kl 126 (148)
|-|.--.-=||.++ ..+.|+.+|..+++|+ ..|.+|+..+.++
T Consensus 61 LaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~ 105 (138)
T 3hnw_A 61 MMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKA 105 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344477555 6677888888887776 4788888888775
No 6
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=47.59 E-value=20 Score=25.35 Aligned_cols=17 Identities=35% Similarity=0.606 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhhhhh
Q 040074 130 LKKELRDRLDKHNAELE 146 (148)
Q Consensus 130 w~keLkdql~kH~~ELE 146 (148)
+++-|.+++++|..||+
T Consensus 45 LKkkl~~el~~h~~ei~ 61 (84)
T 1gmj_A 45 LKKHKENEISHHAKEIE 61 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 7
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=43.77 E-value=24 Score=31.33 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=43.5
Q ss_pred cchhhhhhhhh--hccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040074 87 LDHQKLYFRLT--IVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNA 143 (148)
Q Consensus 87 akklqlYF~lq--~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~ 143 (148)
.=.+++| +|+ ..+.|++|++.+++|++.-..++....++..-|++||++=..|.-+
T Consensus 443 IL~m~L~-rLT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 500 (514)
T 2inr_A 443 IVMLQLY-RLTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500 (514)
T ss_dssp HHTCCGG-GGSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHhchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3344554 333 5677899999999999998999998888999999999887777643
No 8
>3zwl_E Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=41.11 E-value=14 Score=23.83 Aligned_cols=18 Identities=11% Similarity=0.318 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 040074 116 KDELVQKQEKVIQELKKE 133 (148)
Q Consensus 116 KdELi~kq~kliq~w~ke 133 (148)
-.++|.+++++|++|..-
T Consensus 10 ~~evIe~RRrlLeEW~aw 27 (50)
T 3zwl_E 10 MRDLILHQRELLKQWTEY 27 (50)
T ss_dssp -CCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 347999999999999754
No 9
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=39.21 E-value=28 Score=23.56 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=21.6
Q ss_pred hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 040074 105 EIDAMEEELKIKDELVQKQEKVIQELKKELR 135 (148)
Q Consensus 105 eIa~mEeELk~KdELi~kq~kliq~w~keLk 135 (148)
.|..||-+|.-||+.|..=++.|...+.-+.
T Consensus 26 ~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 26 RIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5788888899999888877777766665553
No 10
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=37.24 E-value=74 Score=20.89 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=31.5
Q ss_pred hccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 040074 98 IVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLD 139 (148)
Q Consensus 98 ~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~ 139 (148)
..+.|.+.+..++.+++.-.+-++.-.+-+..|++.|...+.
T Consensus 71 a~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 71 AVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 556677777788888777777777777778888888877654
No 11
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=36.23 E-value=24 Score=31.02 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=36.7
Q ss_pred hccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040074 98 IVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNA 143 (148)
Q Consensus 98 ~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~ 143 (148)
-.+.+++|++.++++++--.+++....++.+-|++||++=..|+-.
T Consensus 417 e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~ 462 (470)
T 3ilw_A 417 ERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGD 462 (470)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3556777888888888888888888888888899999887777643
No 12
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=35.70 E-value=85 Score=24.18 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=12.6
Q ss_pred chhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Q 040074 101 EPRHEIDAMEEELKIKDELVQKQEKVIQELKKE 133 (148)
Q Consensus 101 ~lrkeIa~mEeELk~KdELi~kq~kliq~w~ke 133 (148)
.|++|++.++.+++-.++-++-..|+++..+.|
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DE 104 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAA 104 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333444443333
No 13
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=34.77 E-value=28 Score=30.76 Aligned_cols=56 Identities=25% Similarity=0.356 Sum_probs=41.9
Q ss_pred cchhhhhhhhh--hccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040074 87 LDHQKLYFRLT--IVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNA 143 (148)
Q Consensus 87 akklqlYF~lq--~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~ 143 (148)
.=.+++| +|+ ..+.+++|++.+++|++.-..++....++..-|++||++=..|.-.
T Consensus 419 IL~m~L~-rLt~~e~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~y~~ 476 (496)
T 2nov_A 419 IVTLQLY-RLTNTDVVVLQEEEAELREKIAMLAAIIGDERTMYNLMKKELREVKKKFAT 476 (496)
T ss_dssp HHTCBGG-GGSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHCC
T ss_pred HHhChHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3334454 333 5577888999999999888888888888888899999887776643
No 14
>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J
Probab=28.97 E-value=1.1e+02 Score=20.53 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=31.2
Q ss_pred hHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040074 105 EIDAME-EELKIKDELVQKQEKVIQELKKELRDRLDKHNA 143 (148)
Q Consensus 105 eIa~mE-eELk~KdELi~kq~kliq~w~keLkdql~kH~~ 143 (148)
+|+... .+-+.|.+++.+=++=|..|-..-..+++|++.
T Consensus 21 ~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~ 60 (70)
T 1xi4_J 21 RLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKA 60 (70)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 454443 345678899999999999999999999999875
No 15
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.81 E-value=34 Score=25.52 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=31.3
Q ss_pred ccCCCCccchhhhhh-hhh----hccchhhhHHHHHHHhhhhHHHHHHH
Q 040074 80 SDDFPPPLDHQKLYF-RLT----IVKEPRHEIDAMEEELKIKDELVQKQ 123 (148)
Q Consensus 80 ~rDFmeaakklqlYF-~lq----~~e~lrkeIa~mEeELk~KdELi~kq 123 (148)
++|++..+|..-..- +|- .++.-.+.|+.||+|++...+-.++.
T Consensus 63 a~dli~kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~~el~~~ 111 (151)
T 1yke_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEA 111 (151)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888877666 666 55666778999999988766544433
No 16
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.79 E-value=77 Score=29.01 Aligned_cols=20 Identities=30% Similarity=0.355 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 040074 121 QKQEKVIQELKKELRDRLDK 140 (148)
Q Consensus 121 ~kq~kliq~w~keLkdql~k 140 (148)
+-|...|+-+|+-|++|+.|
T Consensus 127 dnQlsnIrvLQsnLedq~~k 146 (562)
T 3ghg_A 127 IEKVQHIQLLQKNVRAQLVD 146 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666666666544
No 17
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=28.61 E-value=36 Score=24.62 Aligned_cols=44 Identities=16% Similarity=0.146 Sum_probs=31.3
Q ss_pred ccCCCCccchhhhhh-hhh----hccchhhhHHHHHHHhhhhHHHHHHH
Q 040074 80 SDDFPPPLDHQKLYF-RLT----IVKEPRHEIDAMEEELKIKDELVQKQ 123 (148)
Q Consensus 80 ~rDFmeaakklqlYF-~lq----~~e~lrkeIa~mEeELk~KdELi~kq 123 (148)
++|++..+|..-..- +|- .++.=.+.|+.+|+|++...+-.++.
T Consensus 63 a~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~ 111 (132)
T 1ykh_B 63 STDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEA 111 (132)
T ss_dssp HHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888888877666 666 55666778999999988766544433
No 18
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=26.90 E-value=86 Score=24.15 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=15.8
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 040074 102 PRHEIDAMEEELKIKDELVQKQEKVIQELKKELR 135 (148)
Q Consensus 102 lrkeIa~mEeELk~KdELi~kq~kliq~w~keLk 135 (148)
.++.|..++.|+.....=|...+..|.++.|.+.
T Consensus 66 ~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e 99 (152)
T 3a7p_A 66 LLNTLAILQKELKSKEQEIRRLKEVIALKNKNTE 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444433
No 19
>3r2p_A Apolipoprotein A-I; amphipathic alpha-helix, major protein of high density lipop (HDL), lipid binding, plasma, lipid transport; 2.20A {Homo sapiens} PDB: 1gw3_A 1gw4_A
Probab=26.55 E-value=1.8e+02 Score=21.19 Aligned_cols=19 Identities=32% Similarity=0.420 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 040074 128 QELKKELRDRLDKHNAELE 146 (148)
Q Consensus 128 q~w~keLkdql~kH~~ELE 146 (148)
.-.-.+++++++.|+.||-
T Consensus 165 ~Py~ee~k~kl~~~leeLk 183 (185)
T 3r2p_A 165 APYSDELRQRLAARLEALK 183 (185)
T ss_dssp HHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHHhh
Confidence 3345777888888888773
No 20
>1ufz_A Hypothetical protein BAB28515; HBS1-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, translatio; NMR {Mus musculus} SCOP: a.5.9.1
Probab=26.26 E-value=34 Score=24.17 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhhcccCcchHHHhhhcCCCCCCCCCCCCCCCcccchhh
Q 040074 28 DMIACVNVMDDALLPCLTELDLNKAIMPDFEAPLTDFDEPAVQPAVET 75 (148)
Q Consensus 28 Dm~acV~~leaaLLPCLpareLqa~idp~~~~~l~rs~~pshqidVEr 75 (148)
-+.+|+-.|...|=.+.|.+.|-.+|. .+..|||+
T Consensus 33 rL~SCLd~iR~VlGdsV~e~~Lv~ail-------------k~dfD~ek 67 (83)
T 1ufz_A 33 RLYSCLDHMREVLGDAVPDDILTEAIL-------------KHKFDVQK 67 (83)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHH-------------HTTSCHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHH-------------HhcCCHHH
Confidence 389999999999999999999988777 56788888
No 21
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=26.06 E-value=54 Score=24.40 Aligned_cols=15 Identities=33% Similarity=0.554 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhhh
Q 040074 131 KKELRDRLDKHNAEL 145 (148)
Q Consensus 131 ~keLkdql~kH~~EL 145 (148)
-.+|+.++.+|..||
T Consensus 141 ~eeL~~~~~~~~eeL 155 (165)
T 1gs9_A 141 LRKLRKRLLRDADDL 155 (165)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHH
Confidence 344455555555544
No 22
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=25.33 E-value=71 Score=29.17 Aligned_cols=66 Identities=26% Similarity=0.354 Sum_probs=38.2
Q ss_pred ccccCCCCccchhhhhhhhhh---------------------------------ccchhhhHHHHHHHhhhhHHHHHHHH
Q 040074 78 QASDDFPPPLDHQKLYFRLTI---------------------------------VKEPRHEIDAMEEELKIKDELVQKQE 124 (148)
Q Consensus 78 hA~rDFmeaakklqlYF~lq~---------------------------------~e~lrkeIa~mEeELk~KdELi~kq~ 124 (148)
||.-+|++--..==+|+++.+ -|+.|.|+..-|+-.-.+.|-+.|-.
T Consensus 269 DAII~FPe~Sg~ePlYISvs~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~ 348 (551)
T 2b5u_A 269 DAVIRFPKDSGHNAVYVSVSDVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAV 348 (551)
T ss_dssp EEEEECCGGGCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566789987777788997761 11223333333333344445445555
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 040074 125 KVIQELKKELRDRLDKHNAE 144 (148)
Q Consensus 125 kliq~w~keLkdql~kH~~E 144 (148)
++|++.+.+| |-.+|-+.+
T Consensus 349 ~~~~~~~~~~-~~~n~~~~~ 367 (551)
T 2b5u_A 349 QVYNSRKSEL-DAANKTLAD 367 (551)
T ss_dssp HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHhhHHHH-HhhhhHHHH
Confidence 7788877777 445554443
No 23
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=25.04 E-value=1.1e+02 Score=24.77 Aligned_cols=36 Identities=19% Similarity=0.335 Sum_probs=15.3
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 040074 100 KEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELR 135 (148)
Q Consensus 100 e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLk 135 (148)
+.++.++..++++++.-.+-+..+++.++.-++++.
T Consensus 452 e~l~~e~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~ 487 (597)
T 3oja_B 452 EQLEAEVNELRAEVQQLTNEQIQQEQLLQGLHAEID 487 (597)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 444445555544444433334444444444444443
No 24
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=24.86 E-value=1.2e+02 Score=19.68 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=24.1
Q ss_pred hccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 040074 98 IVKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRD 136 (148)
Q Consensus 98 ~~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkd 136 (148)
..+.|.+.+..++++++.-..-+..-++-+..|++.|..
T Consensus 66 ~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~ 104 (107)
T 1fxk_A 66 LTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQE 104 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666555555556666667766654
No 25
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=24.23 E-value=31 Score=24.26 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=19.8
Q ss_pred hhhh-hhh-hccchhhhHHHHHHHhhh
Q 040074 91 KLYF-RLT-IVKEPRHEIDAMEEELKI 115 (148)
Q Consensus 91 qlYF-~lq-~~e~lrkeIa~mEeELk~ 115 (148)
.-|| .|. ..-.|||||-.|||-..+
T Consensus 50 ~~fy~tL~~v~v~LrkEIk~LdEnig~ 76 (86)
T 3r84_A 50 KQFYERLDKSTTQLRKEIQLLDENVGT 76 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4566 777 667899999999997654
No 26
>2p2u_A HOST-nuclease inhibitor protein GAM, putative; structural genomics, unknown function, PSI-2, protein structure initiative; 2.75A {Desulfovibrio vulgaris} SCOP: h.4.18.1
Probab=23.45 E-value=2.2e+02 Score=21.02 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=25.3
Q ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 040074 104 HEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNAE 144 (148)
Q Consensus 104 keIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~E 144 (148)
++|+.+..++.--..+++.+-.-|+.|.+.--..+..-+..
T Consensus 23 r~ia~l~r~~~~i~~~~n~eI~~ik~~~~~~~~~l~~~i~~ 63 (171)
T 2p2u_A 23 AEIATIDRKVGEIEAQMNEAIDAAKARASQKSAPLLARRKE 63 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777777777765544444333333
No 27
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=23.39 E-value=1.2e+02 Score=23.74 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=31.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 040074 106 IDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKH 141 (148)
Q Consensus 106 Ia~mEeELk~KdELi~kq~kliq~w~keLkdql~kH 141 (148)
+..+|..||.||-.+..--.-|--++|+|.|..-|-
T Consensus 100 LrELEADLKEKDsMVe~LT~TiG~LrKELEdEklK~ 135 (167)
T 4gkw_A 100 LGELEADLKEKDSMVESLTETIGILRKELENEKLKA 135 (167)
T ss_dssp THHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456899999999999998889999999999887664
No 28
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=23.15 E-value=64 Score=24.05 Aligned_cols=116 Identities=18% Similarity=0.198 Sum_probs=62.3
Q ss_pred hhhhHHHHHHHHhhhhhcccCcch--HHHhhhcCCCCCCC-CCCCCCCCcccchhhccccccCCCCccchhhhhh-hhhh
Q 040074 23 QAEIEDMIACVNVMDDALLPCLTE--LDLNKAIMPDFEAP-LTDFDEPAVQPAVETELQASDDFPPPLDHQKLYF-RLTI 98 (148)
Q Consensus 23 ~~~~~Dm~acV~~leaaLLPCLpa--reLqa~idp~~~~~-l~rs~~pshqidVEr~~hA~rDFmeaakklqlYF-~lq~ 98 (148)
++..+|+|.++..|+.+ |.-.| |+=-|.+-|+|+-+ ++.+-. ..=.+++ .+..|-+|...|.-|- +|..
T Consensus 21 p~~~~elik~L~~le~s--assDa~vrq~Ia~LP~eVsd~s~l~klk--Dk~~~e~---l~~~veeA~~~L~eYn~rL~~ 93 (152)
T 4fla_A 21 PLLTEELIKALQDLENA--ASGDATVRQKIASLPQEVQDVSLLEKIT--DKEAAER---LSKTVDEACLLLAEYNGRLAA 93 (152)
T ss_dssp --CHHHHHHHHHHHHHH--HHHHHHHHHHHHTSCGGGTCGGGGGGCC--SHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhcc--ccchHHHHHHHHcCCccccCHHHHHHcc--cHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 35568899999888766 22221 11111123333221 111110 0111222 3367788899999998 8875
Q ss_pred ccchhhh-HHHHHHHhhhhHHHHHHHHHHHHHHHH------HHHHHHhhhhhhh
Q 040074 99 VKEPRHE-IDAMEEELKIKDELVQKQEKVIQELKK------ELRDRLDKHNAEL 145 (148)
Q Consensus 99 ~e~lrke-Ia~mEeELk~KdELi~kq~kliq~w~k------eLkdql~kH~~EL 145 (148)
+-.=|+. |..++.=...-.+.+...++.+.+.+. .+|..|+.|+.-|
T Consensus 94 E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~rv~~vkkeL~~hi~sL 147 (152)
T 4fla_A 94 ELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLARVTQVRKELKSHIQSL 147 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5444443 445555555566667777777777664 3456666776543
No 29
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=22.78 E-value=1e+02 Score=21.46 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=8.1
Q ss_pred Hhhhh-HHHHHHHHHHHHHH
Q 040074 112 ELKIK-DELVQKQEKVIQEL 130 (148)
Q Consensus 112 ELk~K-dELi~kq~kliq~w 130 (148)
.||++ +++..+=++|+++|
T Consensus 22 ~Lk~~~~~l~~~v~~l~~e~ 41 (171)
T 2zvf_A 22 ILRVEPAKLPKTVERFFEEW 41 (171)
T ss_dssp TTTCCTTSHHHHHHHHHHHH
T ss_pred HhCCChHHHHHHHHHHHHHH
Confidence 34433 34444444444443
No 30
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=22.25 E-value=92 Score=21.90 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=21.7
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHHHHH
Q 040074 99 VKEPRHEIDAMEEELKIKDELVQKQEKVIQ 128 (148)
Q Consensus 99 ~e~lrkeIa~mEeELk~KdELi~kq~kliq 128 (148)
..+++.-|+.+-+||+.|+.=|.+-+..|.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777788888888888877766665554
No 31
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=21.94 E-value=78 Score=24.62 Aligned_cols=40 Identities=5% Similarity=0.003 Sum_probs=19.5
Q ss_pred ccchhhhhhhhh-hccchhhhHHHHHHHhhhhHHHHHHHHH
Q 040074 86 PLDHQKLYFRLT-IVKEPRHEIDAMEEELKIKDELVQKQEK 125 (148)
Q Consensus 86 aakklqlYF~lq-~~e~lrkeIa~mEeELk~KdELi~kq~k 125 (148)
....+.-||++. .-+.||+|++.++.++..-.+|.+.-++
T Consensus 14 ~~~~~~~~~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~r 54 (255)
T 2j5u_A 14 AVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKD 54 (255)
T ss_dssp ------------CTTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777665 5568999999888877666666544333
No 32
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=20.51 E-value=1.8e+02 Score=20.79 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=19.7
Q ss_pred hhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 040074 103 RHEIDAMEEELKIKDELVQKQEKVIQELKKELR 135 (148)
Q Consensus 103 rkeIa~mEeELk~KdELi~kq~kliq~w~keLk 135 (148)
-+||+.|++++....--+++-+.+...=..+.+
T Consensus 3 ~~e~~~l~~qi~~~ekr~~RLKevF~~ks~eFR 35 (123)
T 4dzo_A 3 SKEVAELKKQVESAELKNQRLKEVFQTKIQEFR 35 (123)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999987766555544444433333333
Done!