Query 040074
Match_columns 148
No_of_seqs 13 out of 15
Neff 1.8
Searched_HMMs 13730
Date Mon Mar 25 07:16:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040074.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040074hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ab4a_ e.11.1.1 (A:) DNA Gyra 44.1 12 0.00089 29.8 4.5 45 99-143 442-486 (493)
2 d1ufza_ a.5.9.1 (A:) HBS1-like 33.4 10 0.00073 25.3 2.0 35 28-75 33-67 (83)
3 d1ykhb1 a.252.1.1 (B:2-130) RN 29.0 13 0.00096 25.3 2.1 37 81-117 63-104 (129)
4 d1fxka_ a.2.5.1 (A:) Prefoldin 23.9 64 0.0047 20.1 4.7 35 100-134 68-102 (107)
5 d1q79a2 d.218.1.3 (A:19-214) P 23.2 46 0.0033 23.6 4.2 30 109-138 36-65 (196)
6 d1tjla1 a.2.14.1 (A:7-110) Dna 23.0 35 0.0026 22.4 3.3 13 81-95 23-35 (104)
7 d2d29a2 e.6.1.1 (A:2-234) Acyl 20.8 15 0.0011 24.7 0.9 32 92-123 2-35 (233)
8 d1qvra2 c.37.1.20 (A:149-535) 19.9 91 0.0067 23.7 5.6 44 102-146 287-330 (387)
9 d2azeb1 e.63.1.2 (B:201-301) T 18.0 62 0.0045 21.1 3.7 32 100-131 4-35 (101)
10 d1yt3a2 a.60.8.3 (A:295-375) R 17.2 21 0.0015 22.1 1.0 37 98-134 12-67 (81)
No 1
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Probab=44.08 E-value=12 Score=29.76 Aligned_cols=45 Identities=7% Similarity=0.163 Sum_probs=33.1
Q ss_pred ccchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 040074 99 VKEPRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNA 143 (148)
Q Consensus 99 ~e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~ 143 (148)
.+.|++|++.+++|++.=..+++.-+++..-+.+||++=.+|+-.
T Consensus 442 ~~kL~~E~~~l~~ei~eL~~iL~s~~~l~~~i~~EL~~lk~kfg~ 486 (493)
T d1ab4a_ 442 HEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGD 486 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCC
Confidence 456778888888887776667766677777778888877777644
No 2
>d1ufza_ a.5.9.1 (A:) HBS1-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.42 E-value=10 Score=25.34 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhhcccCcchHHHhhhcCCCCCCCCCCCCCCCcccchhh
Q 040074 28 DMIACVNVMDDALLPCLTELDLNKAIMPDFEAPLTDFDEPAVQPAVET 75 (148)
Q Consensus 28 Dm~acV~~leaaLLPCLpareLqa~idp~~~~~l~rs~~pshqidVEr 75 (148)
-+.+|+-.|...+=.|.|.+.|-.+|. .+..|||+
T Consensus 33 RL~SCldqmR~VvGDsvpe~~lv~avl-------------k~dydvek 67 (83)
T d1ufza_ 33 RLYSCLDHMREVLGDAVPDDILTEAIL-------------KHKFDVQK 67 (83)
T ss_dssp HHHHHHHHHHHHTTTTSCHHHHHHHHH-------------HTTSCHHH
T ss_pred HHHHHHHHHHHHHcccCCHHHHHHHHH-------------HccCCHHH
Confidence 489999999999999999999988887 56788888
No 3
>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=29.03 E-value=13 Score=25.29 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=28.1
Q ss_pred cCCCCccchhhhhh-hhh----hccchhhhHHHHHHHhhhhH
Q 040074 81 DDFPPPLDHQKLYF-RLT----IVKEPRHEIDAMEEELKIKD 117 (148)
Q Consensus 81 rDFmeaakklqlYF-~lq----~~e~lrkeIa~mEeELk~Kd 117 (148)
+|++..+|..-... +|- .++.=.+-|+.||+|+....
T Consensus 63 ~dii~kakqId~LI~sLP~~~~see~Q~~~i~~Le~E~~~~~ 104 (129)
T d1ykhb1 63 TDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVE 104 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 78999999888887 776 34555677888888887654
No 4
>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=23.95 E-value=64 Score=20.09 Aligned_cols=35 Identities=14% Similarity=0.277 Sum_probs=18.5
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Q 040074 100 KEPRHEIDAMEEELKIKDELVQKQEKVIQELKKEL 134 (148)
Q Consensus 100 e~lrkeIa~mEeELk~KdELi~kq~kliq~w~keL 134 (148)
..|.+.+..++.+++.=+.-++.-++=+.+|++.+
T Consensus 68 ~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l 102 (107)
T d1fxka_ 68 EELQEKLETLQLREKTIERQEERVMKKLQEMQVNI 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666654444444444444555444
No 5
>d1q79a2 d.218.1.3 (A:19-214) Poly(A) polymerase, PAP, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=23.20 E-value=46 Score=23.65 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040074 109 MEEELKIKDELVQKQEKVIQELKKELRDRL 138 (148)
Q Consensus 109 mEeELk~KdELi~kq~kliq~w~keLkdql 138 (148)
-+||.+.+.+++.+=.+++++|.+....+.
T Consensus 36 s~ee~~~R~~vl~~L~~lv~~~~~~~~~~~ 65 (196)
T d1q79a2 36 EEEELQRRILILGKLNNLVKEWIREISESK 65 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 577888889999999999999998875543
No 6
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA, alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Probab=22.95 E-value=35 Score=22.39 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=7.5
Q ss_pred cCCCCccchhhhhhh
Q 040074 81 DDFPPPLDHQKLYFR 95 (148)
Q Consensus 81 rDFmeaakklqlYF~ 95 (148)
.|||.+ ++.-||+
T Consensus 23 e~YMn~--~QL~~Fr 35 (104)
T d1tjla1 23 EEYMNE--AQLAHFR 35 (104)
T ss_dssp CCTTCH--HHHHHHH
T ss_pred CCcCCH--HHHHHHH
Confidence 577764 3445663
No 7
>d2d29a2 e.6.1.1 (A:2-234) Acyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=20.76 E-value=15 Score=24.70 Aligned_cols=32 Identities=9% Similarity=0.106 Sum_probs=16.1
Q ss_pred hhhhhh-hccchhhhHHH-HHHHhhhhHHHHHHH
Q 040074 92 LYFRLT-IVKEPRHEIDA-MEEELKIKDELVQKQ 123 (148)
Q Consensus 92 lYF~lq-~~e~lrkeIa~-mEeELk~KdELi~kq 123 (148)
+||+|+ ..+++++.... +++|+.--..-+++.
T Consensus 2 ~~F~l~~e~~~l~~~~r~f~~~~i~p~a~e~d~~ 35 (233)
T d2d29a2 2 LWFEEGAEERQVLGPFREFLKAEVAPGAAERDRT 35 (233)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHHHTGGGHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHh
Confidence 588887 34455554444 555554333333433
No 8
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}
Probab=19.89 E-value=91 Score=23.66 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q 040074 102 PRHEIDAMEEELKIKDELVQKQEKVIQELKKELRDRLDKHNAELE 146 (148)
Q Consensus 102 lrkeIa~mEeELk~KdELi~kq~kliq~w~keLkdql~kH~~ELE 146 (148)
+.++|..++++++.-.+-.+..+.++..- ++|+.++++-..++|
T Consensus 287 le~el~~lee~~~~L~~~w~~ek~~l~~i-~~Lk~~Le~lr~~le 330 (387)
T d1qvra2 287 IEAEIAKLTEEIAKLRAEWEREREILRKL-REAQHRLDEVRREIE 330 (387)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 33444444444444444444444444332 345555555555443
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.97 E-value=62 Score=21.07 Aligned_cols=32 Identities=13% Similarity=0.191 Sum_probs=23.0
Q ss_pred cchhhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 040074 100 KEPRHEIDAMEEELKIKDELVQKQEKVIQELK 131 (148)
Q Consensus 100 e~lrkeIa~mEeELk~KdELi~kq~kliq~w~ 131 (148)
..|++||+.|+++=+.=|++|..=..-|+...
T Consensus 4 ~~L~~El~~L~~~E~~LD~li~~~~~~L~~lt 35 (101)
T d2azeb1 4 EGLTQDLRQLQESEQQLDHLMNICTTQLRLLS 35 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999888888888765544444433
No 10
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=17.18 E-value=21 Score=22.05 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=23.6
Q ss_pred hccchhhhHHHHHHHhhhhHHHHHHHH-------------------HHHHHHHHHH
Q 040074 98 IVKEPRHEIDAMEEELKIKDELVQKQE-------------------KVIQELKKEL 134 (148)
Q Consensus 98 ~~e~lrkeIa~mEeELk~KdELi~kq~-------------------kliq~w~keL 134 (148)
..+.+|.-|...-+++++--||+-.-+ .+++||+.++
T Consensus 12 ~~K~lk~~v~~~Ae~~~IapelLaskkdle~ll~~~~~~~~~~~~P~ll~GWR~el 67 (81)
T d1yt3a2 12 AFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGEL 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGGGSHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHHHHHhcCCCcCCCHHHhhhhHHH
Confidence 345567777777777777666652211 2568999986
Done!